BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (954 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254282207|ref|ZP_04957175.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [gamma proteobacterium NOR51-B] gi|219678410|gb|EED34759.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [gamma proteobacterium NOR51-B] Length = 961 Score = 1027 bits (2654), Expect = 0.0, Method: Composition-based stats. Identities = 560/956 (58%), Positives = 711/956 (74%), Gaps = 10/956 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P++ + P + ++VIKRNG V +F+ SK+S AI KAF+AVEG A Sbjct: 12 PTRSNPIPTT-SNPGASPLAATAPGQLRVIKRNGTVVAFEDSKVSVAITKAFLAVEGGTA 70 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + + LTEQ V + S +HIEDIQDQVE +LM++G HKI R+YV+YR Sbjct: 71 AASSRIHETVAKLTEQVVATFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYR 130 Query: 123 EERSDVRAAQSHSKSD-APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 E R+ RAA++ + A ++ ++ DG+ + +R+ IV EAC GL DVS + Sbjct: 131 EARAQERAAKAALSPESQQAAERINVVQADGSRSPLDIERVRTIVAEACEGLADVSEAAI 190 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 + E +N+YDG++ ++ TAL+ ++RTLIE+EPNY+ AR LL+ LR E L + + Sbjct: 191 IDEALRNLYDGVAAEEVSTALVITARTLIEQEPNYSYAAARLLLDNLRAEGL-SFMGVAE 249 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 AT +M YP +I+ G++ LL + DFDL L + L ERD F YLGLQ L Sbjct: 250 LATQQDMTIHYPAALKAFIKRGIELELLAPDLQDFDLEELGSALLPERDLQFSYLGLQTL 309 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYF+H + +R E+PQ FFMRVAMGLA +E K RA+EFY LLSSF +M STPTLFN+ Sbjct: 310 YDRYFIHSDNTRFELPQIFFMRVAMGLAAREEAKNARAIEFYRLLSSFDYMSSTPTLFNA 369 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKS Sbjct: 370 GTLRPQLSSCYLTTVPDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKS 429 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QG++PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 430 QGIVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNT 489 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV + WTLFSP++V DLHDLYGK FE Y+ YE A GE+K+ + + Sbjct: 490 ANWIPDLFMKRVFDDGDWTLFSPNDVPDLHDLYGKAFEERYQQYEAMAASGELKLHKTLK 549 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A +LWRKML M+FETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCN Sbjct: 550 AQSLWRKMLGMIFETGHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSADEIAVCN 609 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NL H N + DKL STIRTA+R+LDNVIDIN +++ +A++SN HR IG+G+M Sbjct: 610 LGSVNLPQHIENGVLNLDKLRSTIRTAIRMLDNVIDINYYSVPQAEQSNFRHRPIGMGVM 669 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ L + Y S +AV AD+SME IS++AI AS ELA+ERG+YSS++GSLW QG+F Sbjct: 670 GFQDALYKLDVAYGSDQAVSFADQSMEAISYYAIEASSELAEERGSYSSYEGSLWSQGIF 729 Query: 722 PIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P DS+ LL + R + +NR + W LK +V GMRNSN MAIAPTATIANI GVS Sbjct: 730 PHDSLDLLIQHRGEDYIQVNRDQSMDWAPLKAKVAANGMRNSNVMAIAPTATIANITGVS 789 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 QSI+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWD+ M++DLKY+DGS+ I+RIPD Sbjct: 790 QSIEPTYQNLYVKSNLSGEFTVVNPYLVKDLKARGLWDKVMVNDLKYYDGSVQAIDRIPD 849 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK +ATAFE++P WL++SASRRQKWIDQAQSLNLY++ SGKKLD YR AW GLKT Sbjct: 850 DLKAKYATAFEVEPRWLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWFNGLKT 909 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 TYYLRS +AT EKST++ GKLNAV +++ +P +C+ D +CE CQ Sbjct: 910 TYYLRSLAATGTEKSTVE--SGKLNAVSSG--SATPQPAPVPQACSLDDPDCEACQ 961 >gi|300022336|ref|YP_003754947.1| ribonucleoside-diphosphate reductase, subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299524157|gb|ADJ22626.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 956 Score = 1026 bits (2652), Expect = 0.0, Method: Composition-based stats. Identities = 595/944 (63%), Positives = 721/944 (76%), Gaps = 6/944 (0%) Query: 15 FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74 S P QVI+RNG VT FD SKIS A+ KAF+AVEG A+ S RV + + Sbjct: 15 SSSTGIPKATVDPVFQVIRRNGSVTPFDASKISVALTKAFLAVEGGRAAASRRVHETVDG 74 Query: 75 LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 LT Q V L + HIE+IQDQVE +LM+ HHK+ R YVLYREER RAA Sbjct: 75 LTSQIVVALTRRGVQERTFHIEEIQDQVELALMRGEHHKVARAYVLYREERKRERAA--E 132 Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + + P P + + DG+L ++ RL ++EE+C+GL DVS++ +LSET +N+YDG++ Sbjct: 133 TAAPIPTMPSISVKSKDGSLAPLDAARLRKLIEESCAGLADVSAEAILSETQRNLYDGIT 192 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 +L A + ++RTLIE EPNY VTAR L++KLRRE L+ V + +A EM YPE Sbjct: 193 RDELADAPVLAARTLIETEPNYTFVTARLLMDKLRREALSFVAGRTDEARQSEMGERYPE 252 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 YF +I +G+ A LL + FDL L LK ERD F+YLGLQ LYDRYFL +G R Sbjct: 253 YFRAFIAKGIVADLLDPELARFDLDRLGGALKPERDGIFQYLGLQTLYDRYFLQTHGIRF 312 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQAFFMRVAMGLAL+E ++E +A+EFY+L+S+F FMCSTPTLFN+GT PQLSSCFLT Sbjct: 313 ELPQAFFMRVAMGLALREIDREAKAIEFYDLISTFDFMCSTPTLFNAGTPRPQLSSCFLT 372 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TVPDDL GIF ++++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDT Sbjct: 373 TVPDDLDGIFKSIKDNALLAKYSGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDT 432 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 A+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKN GDDRRRTHDMNTA+WIPDLFM+RV Sbjct: 433 AIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNAGDDRRRTHDMNTAHWIPDLFMQRVA 492 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ WTLFSPDE DLHDLYG F YE YE +A+R E+KV R++ AV LWR+MLTMLF Sbjct: 493 EDGQWTLFSPDETPDLHDLYGTAFAERYEAYEEKAERMEMKVARRVRAVDLWRRMLTMLF 552 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETGHPWITFKDPCN+RSPQQH G+VHSSNLC EITLN+S++E AVCNLGSINL+AH N+ Sbjct: 553 ETGHPWITFKDPCNLRSPQQHCGIVHSSNLCAEITLNTSNDEVAVCNLGSINLVAHVTND 612 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D+DKL T++TA+R+LDNVIDIN +TI +A++SN HR +G+GLMGFQ AL L I Y Sbjct: 613 GVDFDKLERTVKTAMRMLDNVIDINFYTIPEARRSNLRHRPVGMGLMGFQDALQALRINY 672 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EAV AD SME ISFHAISASV+LA ERG Y SF GSLW QG+ PIDSI LL R Sbjct: 673 GSEEAVAFADTSMEAISFHAISASVDLAAERGRYPSFDGSLWSQGILPIDSIELLKSARG 732 Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 +L ++ +S L WD L+ RV+T GMRNSN MAIAPTATI+NICGV+QSI+P+++NLYVKS Sbjct: 733 TDLRLDTSSTLDWDGLRDRVRTTGMRNSNTMAIAPTATISNICGVAQSIEPAFRNLYVKS 792 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NMSGDFTVVN FLV +LK R LWDE MISDLKY DGS+G I+RIP+DLK ++ATAFEID Sbjct: 793 NMSGDFTVVNPFLVRDLKARGLWDEVMISDLKYFDGSLGAIDRIPEDLKALYATAFEIDA 852 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 WL+++A+RRQKWIDQ QSLNLY+ P+G+KLD +YR AW GLKTTYYLRS+SAT VEK Sbjct: 853 HWLVDAAARRQKWIDQGQSLNLYIAAPNGRKLDALYRLAWERGLKTTYYLRSQSATHVEK 912 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGI---PSSCTSDTECEVCQ 954 STLKG DGKLNAV + +S+ ++ + D CE CQ Sbjct: 913 STLKGTDGKLNAVSSSVHHSAPENIEAMAGKACLIDDPTCEACQ 956 >gi|254239526|ref|ZP_04932848.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192] gi|126192904|gb|EAZ56967.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192] Length = 963 Score = 1022 bits (2641), Expect = 0.0, Method: Composition-based stats. Identities = 558/960 (58%), Positives = 703/960 (73%), Gaps = 17/960 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QASAPQAADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D ++ LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE Sbjct: 68 SSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ R + A P ++I DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAAERKNAGAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + YIE+G + L+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E ++E R +EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARTIEFYNLLSSFDYMSSTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP +V DLHDLYGK FE YE YE A G++K+ + + A Sbjct: 487 IPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL+ H + + D KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S A+ AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PID Sbjct: 667 DALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPID 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S L E R + ++ + L W L++RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DLK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPV-------TDPNSSTHSLGIPSSCTSD-TECEVCQ 954 LR+ +ATS EKST+ GKLNAV P + +P +C+ D +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSAGGNDGLQATPAAEPKPAPVPQACSIDNPDCEACQ 963 >gi|75677069|ref|YP_319490.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter winogradskyi Nb-255] gi|74421939|gb|ABA06138.1| ribonucleotide reductase large subunit [Nitrobacter winogradskyi Nb-255] Length = 969 Score = 1021 bits (2640), Expect = 0.0, Method: Composition-based stats. Identities = 605/969 (62%), Positives = 741/969 (76%), Gaps = 15/969 (1%) Query: 1 MHPSKDVNKGDEDAFPSL--AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58 M + + PSL A P QVI+RNG V+ FD +KI+ A+ KAF+AVE Sbjct: 1 MSAATETVPAARIVRPSLSAAATAPSSEPACQVIRRNGSVSPFDSAKIAVALTKAFLAVE 60 Query: 59 GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118 G A+ S RV DI+ LT+Q V L + + + HIEDIQDQVE +LM+S HHK+ R Y Sbjct: 61 GNSAAASRRVHDIVTGLTDQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAY 120 Query: 119 VLYREERSDVRAAQSHSKSDAPIAPK----LKIMMDDGTLISFNSKRLEMIVEEACSGLQ 174 VLYREER+ RA SKS A L++ DG+LI+ ++ RL +VEEAC+GL Sbjct: 121 VLYREERARERAKAQESKSKKGGAAAAKAALRMKSADGSLIALDTPRLTAVVEEACAGLG 180 Query: 175 DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234 DVS+ +L+ET++N+YDG+S +L A I ++RTL+E +P+YAKV+AR LL+K+RRE L+ Sbjct: 181 DVSASAILTETHRNLYDGISVDELAQAPILAARTLVETDPDYAKVSARLLLDKMRREALS 240 Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294 V + ++AT EM Y +YF Y+ G+ LL + FDL LA LK ERD F+ Sbjct: 241 FVAGRLEQATQAEMAERYADYFLSYVRAGIDHELLDPEIGRFDLDRLAAALKPERDLRFD 300 Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 YLGLQ LYDRYFLH+ R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM S Sbjct: 301 YLGLQTLYDRYFLHVRSVRFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMAS 360 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 TPTLFN+GT PQLSSCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI Sbjct: 361 TPTLFNAGTLRPQLSSCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHI 420 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 GTNG+SQGV+PFLKVANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRR Sbjct: 421 KGTNGESQGVVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRR 480 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 RTHDMNTANW+PDLFM+RV ++ WTLFSPDE DLHDL GK F Y YE +A RGE+ Sbjct: 481 RTHDMNTANWVPDLFMQRVEEDGMWTLFSPDETPDLHDLTGKAFAGRYAYYEEKAARGEL 540 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 +V +++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ Sbjct: 541 RVTKQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSN 600 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E AVCNLGS+NL+ H + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN HR Sbjct: 601 TEVAVCNLGSVNLVNHIKDGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHR 660 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ AL++L +PYAS EAV ADESME I++HAIS SVELA ERG Y S++GS Sbjct: 661 PVGLGIMGFQDALNILRLPYASDEAVSFADESMEAIAYHAISGSVELAAERGRYPSYQGS 720 Query: 715 LWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LW +GV P+DS+ L+ E R E+ ++R+SRL WD L++RV TIGMRNSNCMAIAPTATI+ Sbjct: 721 LWSKGVLPLDSLELVDEARGAEVDIDRSSRLDWDSLRQRVMTIGMRNSNCMAIAPTATIS 780 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NICGVSQSI+P+YQNLYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G Sbjct: 781 NICGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGE 840 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+R+PDDLK ++ATAFEID WLI++A+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW Sbjct: 841 IDRVPDDLKALYATAFEIDSAWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAW 900 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSLGIPSSCT 945 GLKTTYYLRSRSAT VEKSTLKG DGKLNAV + + + S G S Sbjct: 901 KRGLKTTYYLRSRSATHVEKSTLKGTDGKLNAVAASVSVAPLNGHAAVASASEGWKSCRV 960 Query: 946 SDTECEVCQ 954 D CE CQ Sbjct: 961 DDPTCEACQ 969 >gi|254483512|ref|ZP_05096739.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [marine gamma proteobacterium HTCC2148] gi|214036233|gb|EEB76913.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [marine gamma proteobacterium HTCC2148] Length = 958 Score = 1021 bits (2639), Expect = 0.0, Method: Composition-based stats. Identities = 554/953 (58%), Positives = 699/953 (73%), Gaps = 11/953 (1%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 + D + P+ ++VIKRNG V F+ SKIS AI KAF+AVEG A+ S Sbjct: 13 GTSPVDRETAPAAGGIAATAPGQLRVIKRNGTVVPFEESKISVAITKAFLAVEGGTAAAS 72 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 R+ + + LT+Q + S +HIED+QDQVE SLM++G HKI R+YV+YREE+ Sbjct: 73 SRIHETVAKLTDQVAATFQRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREEQ 132 Query: 126 SDVRAAQSHSKSD-APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 S RAA++ + A + ++ DG+ ++ + RL +V EAC L+DV +L E Sbjct: 133 SRKRAAKASLSQETQDAANGINVIQPDGSRVALDLDRLHTVVSEACFELEDVVESAILDE 192 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 KN+YDG++ +L T+L+ ++RT+IE++PNY+ V AR L + LR E L + AT Sbjct: 193 ALKNLYDGVTAEELATSLVITARTMIEQDPNYSYVAARLLCDNLRAEAL-SFLGVATNAT 251 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 +M LY + YI G++ LL ++ +DL L L ERD F YLGLQ LYDR Sbjct: 252 QADMGQLYAKALPAYIARGIELELLSPNLAGYDLQRLGEALLPERDLQFTYLGLQTLYDR 311 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H + +R E+PQ FFMRVAMGLA +E + RA+EFY LLSSF +M STPTLFN+GT Sbjct: 312 YFIHSDETRFELPQVFFMRVAMGLAAEEANRNDRAIEFYELLSSFDYMSSTPTLFNAGTL 371 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQG+ Sbjct: 372 RPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGKSQGI 431 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+DVEEF++LRKNTGDDRRRTHDMNTANW Sbjct: 432 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDVEEFVELRKNTGDDRRRTHDMNTANW 491 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV WTLFSP +V DLHDLYG FE Y +YE A GEIK+F+ + A Sbjct: 492 IPDLFMKRVFNGEDWTLFSPSDVPDLHDLYGVAFEQRYAHYEAMAAAGEIKLFKTVKAEN 551 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 552 LWRKMLGMLFETGHPWMTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 611 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +NL H N + +KL +T+RTAVR+LDNVIDIN +++ +AK SN HR +GLGLMGFQ Sbjct: 612 VNLPQHIDENGLNLEKLRNTVRTAVRMLDNVIDINYYSVPQAKNSNLMHRPVGLGLMGFQ 671 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+ H+ Y S +AV AD SME IS++AI AS ELA ERGAYSS++GSLW QGVFPID Sbjct: 672 DALYKQHLAYGSEQAVSFADHSMEAISYYAIEASSELAAERGAYSSYEGSLWSQGVFPID 731 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S+ L + R + +++T + W L+ +V+ GMRNSN MAIAPTATIANI GVSQSI Sbjct: 732 SLQRLIDERGADYIQVDQTESMDWQALRSQVQQNGMRNSNVMAIAPTATIANITGVSQSI 791 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTVVN +LV +LK+R LWD M++DLKY+DGS+ I+RIP D+K Sbjct: 792 EPTYQNLYVKSNLSGEFTVVNPYLVRDLKERGLWDGVMVNDLKYYDGSVQAIDRIPADIK 851 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 I++TAFE++P WL+++ASRRQKWIDQAQSLNLY++ +GKKLD YR AW GLKTTYY Sbjct: 852 GIYSTAFEVEPRWLVDAASRRQKWIDQAQSLNLYINNANGKKLDITYRMAWYSGLKTTYY 911 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 LRS +AT EKST+ G LNAV N + +P +C+ D +CE CQ Sbjct: 912 LRSLAATGTEKSTID--TGTLNAVS----NEAAGPAPVPQACSLDDPDCEACQ 958 >gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] gi|254040179|gb|ACT56975.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 954 Score = 1018 bits (2631), Expect = 0.0, Method: Composition-based stats. Identities = 954/954 (100%), Positives = 954/954 (100%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK Sbjct: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL Sbjct: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI Sbjct: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP Sbjct: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI Sbjct: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN Sbjct: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK Sbjct: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN Sbjct: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI Sbjct: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC Sbjct: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL Sbjct: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV Sbjct: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ Sbjct: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD Sbjct: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT Sbjct: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ Sbjct: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 >gi|92119122|ref|YP_578851.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter hamburgensis X14] gi|91802016|gb|ABE64391.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14] Length = 966 Score = 1017 bits (2630), Expect = 0.0, Method: Composition-based stats. Identities = 589/967 (60%), Positives = 739/967 (76%), Gaps = 14/967 (1%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 M + + + + + P+ A P QVI+RNG V+ FD SKI+ A+ KAF+AVEG Sbjct: 1 MSLATEAARAERPSLPAAAA-MPSSEPAYQVIRRNGSVSPFDSSKIAVALTKAFLAVEGN 59 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 A+ S RV DI+ LT+Q V L + + + HIEDIQDQ E +LM+S HHK+ R YVL Sbjct: 60 SAAASRRVHDIVTELTDQIVASLTRRSDAGRTFHIEDIQDQAELALMRSAHHKVARAYVL 119 Query: 121 YREERSDVRAAQSHSKSDAPIA----PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV 176 YREER+ RA S + A P L++ DG++ +++RL +VEEAC+GL+ V Sbjct: 120 YREERARERAKAQESNAKKSNAAAATPALRMKSVDGSMAPLDTRRLAAVVEEACAGLEGV 179 Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236 S++ +L+ET++N+YDG+S +L A I ++RTL+E +P+YAK +AR LL+KLRRE L+ + Sbjct: 180 SAEAILTETHRNLYDGISADELALAPILAARTLVETDPDYAKASARLLLDKLRREALSLI 239 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 +P++AT EM Y EYF Y++ G++ LL + FDL LA LK ERD F+YL Sbjct: 240 AGRPEQATQAEMTGRYAEYFLGYVQTGIENELLDPEIGRFDLDRLAAALKPERDLQFDYL 299 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 G Q LYDRYFLH+ G+R E+PQAFFMRVA GLAL+E ++E +A+ FYNLLSSF FM STP Sbjct: 300 GFQTLYDRYFLHVRGTRFELPQAFFMRVACGLALREIDREDKAIAFYNLLSSFDFMASTP 359 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TLFN+GT+ QLSSCFLTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI G Sbjct: 360 TLFNAGTQRAQLSSCFLTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKG 419 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG+SQGV+PFLKVANDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRT Sbjct: 420 TNGESQGVVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 479 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANW+PDLFM+RV ++ WTLFSP+E DLHDL GK F Y +YE +A RGE++V Sbjct: 480 HDMNTANWVPDLFMQRVEEDGVWTLFSPNETPDLHDLTGKAFAERYAHYEGKAARGEMRV 539 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 +++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E Sbjct: 540 TKQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTE 599 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 AVCNLGS+NL+ H + + D+ LA T++TA+R+LDNV+++N +TI +A+ SN HR + Sbjct: 600 VAVCNLGSVNLVNHLHDGKLDHAHLARTVKTAMRMLDNVLNVNFYTIPEARTSNLRHRPV 659 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLGLMGFQ AL++L +PYA EAV ADESME IS+ AIS SV+LA ERG Y S++GSLW Sbjct: 660 GLGLMGFQDALNILRLPYACDEAVSFADESMEAISYWAISGSVDLAAERGRYPSYQGSLW 719 Query: 717 DQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 +G+ P+DS+ L+ E R + ++R+SRL W+ L++RV T+GMRNSNCMAIAPTATI+NI Sbjct: 720 SKGILPLDSLALVDEARGAPIDLDRSSRLDWEALRQRVMTVGMRNSNCMAIAPTATISNI 779 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 CGVSQSI+P+YQNLYVKSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DG + I+ Sbjct: 780 CGVSQSIEPAYQNLYVKSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGGLSRID 839 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 R+PDDLK ++ATAFEID WLI++A+RRQKWIDQAQSLNLY+ +PSGKKLD +YR AW Sbjct: 840 RVPDDLKALYATAFEIDSAWLIDAAARRQKWIDQAQSLNLYIADPSGKKLDALYRHAWKR 899 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSLGIPSSCTSD 947 GLKTTYYLRSRSAT VEKSTLK DGKLNAV + + S G + D Sbjct: 900 GLKTTYYLRSRSATHVEKSTLKVTDGKLNAVSASVSTAPLNGHAASVAESDGWKACRIDD 959 Query: 948 TECEVCQ 954 CE CQ Sbjct: 960 PTCEACQ 966 >gi|85714831|ref|ZP_01045817.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp. Nb-311A] gi|85698317|gb|EAQ36188.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp. Nb-311A] Length = 956 Score = 1017 bits (2629), Expect = 0.0, Method: Composition-based stats. Identities = 594/951 (62%), Positives = 732/951 (76%), Gaps = 13/951 (1%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S A P QVI+RNG V+ FD +KI+ A+ KAF+AVEG A+ S RV DI+ LT Sbjct: 6 SAAAAMPPSEPAYQVIRRNGSVSPFDSAKIAVALTKAFLAVEGNSAAASRRVHDIVAELT 65 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA----Q 132 Q V L + + + HIEDIQDQVE +LM+S HHK+ R YVLYREER+ RA + Sbjct: 66 GQIVASLTRRSDAGRTFHIEDIQDQVELALMRSEHHKVARAYVLYREERARERAKSQESK 125 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + + L++ DG+LI+ ++KRL +V EAC+GL DVS+ +L+ET++N+YDG Sbjct: 126 AKKGNTTAAKTVLRMKSADGSLIALDTKRLATVVVEACAGLGDVSASAILAETHRNLYDG 185 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +S +L A I ++RTL+E +P+YAK +AR LL+KLRRE L+ V + ++AT EM Y Sbjct: 186 ISVDELALAPILAARTLVETDPDYAKASARLLLDKLRREALSFVSGRSEQATQAEMAERY 245 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 +YF Y+ G+ LL + FDL LA LK ERD F+YLGLQ LYDRYFLH+ G Sbjct: 246 ADYFRAYVRTGIDNELLDLEIGRFDLDRLAAALKPERDLRFDYLGLQTLYDRYFLHVRGV 305 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQAFFMRVA GLAL+E ++E++A+ FY+LLSSF FM STPTLFN+GT PQLSSCF Sbjct: 306 RFELPQAFFMRVACGLALREIDREEKAIAFYDLLSSFDFMASTPTLFNAGTLRPQLSSCF 365 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTV DDL GIF A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAN Sbjct: 366 LTTVADDLDGIFKAIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVAN 425 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+R Sbjct: 426 DTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMRR 485 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ WTLFSPDE DLHDL GK F Y YE +A RGE++V +++ AV LWR+MLTM Sbjct: 486 VEEDGMWTLFSPDETPDLHDLTGKAFTERYACYEEKAARGELRVTKQVRAVDLWRRMLTM 545 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S+ E AVCNLGS+NL++H Sbjct: 546 LFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVSHIK 605 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D++ LA T+R A+R+LDNV+D+N +TI +A+ SN HR +GLG+MGFQ AL++L + Sbjct: 606 DGKLDHEHLARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGVMGFQDALNILRL 665 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS AV ADESME I+++AIS SVELA ERG Y S++GSLW +G+ P+DS+ L+ E Sbjct: 666 PYASNGAVSFADESMEAIAYYAISGSVELAAERGRYPSYQGSLWSKGILPLDSLTLVDEA 725 Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R + ++R+SRL WD L++ V TIGMRNSNCMAIAPTATI+NICGVSQSI+P+YQNLYV Sbjct: 726 RGAAVDIDRSSRLDWDSLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYV 785 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEI Sbjct: 786 KSNMSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATAFEI 845 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 D WLI++A+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW GLKTTYYLRSRSAT V Sbjct: 846 DSSWLIDAAARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKTTYYLRSRSATHV 905 Query: 912 EKSTLKGVDGKLNAVPV--------TDPNSSTHSLGIPSSCTSDTECEVCQ 954 EKSTLKG DGKLNAV +++ S G S D CE CQ Sbjct: 906 EKSTLKGTDGKLNAVAASVSAAPLNGHATAASASEGWKSCRIEDPTCEACQ 956 >gi|325272775|ref|ZP_08139119.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp. TJI-51] gi|324102082|gb|EGB99584.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp. TJI-51] Length = 959 Score = 1017 bits (2629), Expect = 0.0, Method: Composition-based stats. Identities = 558/956 (58%), Positives = 705/956 (73%), Gaps = 13/956 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QAKVPQAADSQQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA +++S + P ++I + DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAKERATRANSDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + AT Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VAESAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+E+GV+ LL ++ +DL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYVEKGVEFELLDPALKGYDLERLGKAIDHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL H + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLPNHINDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+D Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLD 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S +L E R + +N L W +++RVK G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SQQILIEARGQKYIDVNLEESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954 LR+ +ATS EKST+ GKLNAV P + +P +C + +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|313497536|gb|ADR58902.1| NrdA [Pseudomonas putida BIRD-1] Length = 959 Score = 1015 bits (2624), Expect = 0.0, Method: Composition-based stats. Identities = 557/956 (58%), Positives = 707/956 (73%), Gaps = 13/956 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ P LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QAQVPQAADSNPDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++++ + P ++I + DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ + A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL H + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLPNHIVDGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S +L E R + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954 LR+ +ATS EKST+ GKLNAV P + +P +C + +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|167035229|ref|YP_001670460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida GB-1] gi|166861717|gb|ABZ00125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas putida GB-1] Length = 959 Score = 1015 bits (2624), Expect = 0.0, Method: Composition-based stats. Identities = 554/956 (57%), Positives = 704/956 (73%), Gaps = 13/956 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QAKVPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++++ + P ++I + DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL H + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HI Y S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D Sbjct: 667 DALYLQHIAYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SQQILIEARGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954 LR+ +ATS EKST+ GKLNAV P + +P +C + +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|148546453|ref|YP_001266555.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida F1] gi|148510511|gb|ABQ77371.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas putida F1] Length = 959 Score = 1012 bits (2615), Expect = 0.0, Method: Composition-based stats. Identities = 557/956 (58%), Positives = 706/956 (73%), Gaps = 13/956 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QAQVPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++++ + P ++I + DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL H + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S +L E R + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954 LR+ +ATS EKST+ GKLNAV P + +P +C + +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|15596353|ref|NP_249847.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa PAO1] gi|107100606|ref|ZP_01364524.1| hypothetical protein PaerPA_01001631 [Pseudomonas aeruginosa PACS2] gi|116049088|ref|YP_792110.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa UCBPP-PA14] gi|218892880|ref|YP_002441749.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa LESB58] gi|254234290|ref|ZP_04927613.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa C3719] gi|296390474|ref|ZP_06879949.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa PAb1] gi|313106127|ref|ZP_07792382.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 39016] gi|9947078|gb|AAG04545.1|AE004545_8 NrdA, catalytic component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa PAO1] gi|115584309|gb|ABJ10324.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126166221|gb|EAZ51732.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa C3719] gi|218773108|emb|CAW28920.1| NrdA, catalytic component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa LESB58] gi|310878884|gb|EFQ37478.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 39016] Length = 963 Score = 1012 bits (2615), Expect = 0.0, Method: Composition-based stats. Identities = 558/960 (58%), Positives = 704/960 (73%), Gaps = 17/960 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QASAPQAADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D ++ LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE Sbjct: 68 SSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ R + A P ++I DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAAERKNAGAASDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + YIE+G + L+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP +V DLHDLYGK FE YE YE A G++K+ + + A Sbjct: 487 IPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL+ H + + D KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S A+ AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PID Sbjct: 667 DALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPID 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S L E R + ++ + L W L++RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DLK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------SSTHSLGIPSSCTSD-TECEVCQ 954 LR+ +ATS EKST+ GKLNAV + + +P +C+ D +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963 >gi|104780528|ref|YP_607026.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas entomophila L48] gi|95109515|emb|CAK14216.1| ribonucleoside diphosphate reductase, alpha subunit [Pseudomonas entomophila L48] Length = 958 Score = 1011 bits (2614), Expect = 0.0, Method: Composition-based stats. Identities = 554/948 (58%), Positives = 705/948 (74%), Gaps = 13/948 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 ++ L P + ++VIKRNG V + KI+ AI KAF+AVEG A+ S R+ D + Sbjct: 18 ESNQDLTATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTV 74 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++R+ RA + Sbjct: 75 ARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQRAKERATR 134 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +++ + P ++I + DG+L + RL I+ EAC GL +V +++ ET KN+YDG Sbjct: 135 ANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGELIQRETLKNLYDG 194 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + ATHHEM LY Sbjct: 195 VALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSATHHEMADLY 253 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + Y+E+GV+ LL ++ +DL + + +ERD F YLGLQ LYDRYF+H +G Sbjct: 254 AKALPAYVEKGVEFELLDPALKGYDLERMGKAINHERDQQFTYLGLQTLYDRYFIHKDGV 313 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT PQLSSC+ Sbjct: 314 RFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCY 373 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 374 LTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 433 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 434 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKR 493 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A LWRKML+M Sbjct: 494 VFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSM 553 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL H Sbjct: 554 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIV 613 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ AL+L HI Sbjct: 614 DGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHI 673 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+DS +L E Sbjct: 674 PYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEA 733 Query: 733 RD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++ T L W +++RVK G+RNSN MAIAPTATIANI GVSQSI+P+YQNLY Sbjct: 734 RGQKYIDVDLTESLDWAPVRERVKK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLY 792 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK ++ATAFE Sbjct: 793 VKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFE 852 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 853 VETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYYLRALAATS 912 Query: 911 VEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954 EKST+ GKLNAV P + +P +C + +CE CQ Sbjct: 913 TEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 958 >gi|254516738|ref|ZP_05128797.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma proteobacterium NOR5-3] gi|219675161|gb|EED31528.1| putative ribonucleoside-diphosphate reductase alpha subunit [gamma proteobacterium NOR5-3] Length = 967 Score = 1011 bits (2614), Expect = 0.0, Method: Composition-based stats. Identities = 562/957 (58%), Positives = 707/957 (73%), Gaps = 13/957 (1%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 + + +V G + ++ P + ++VIKRNG V F+ SKIS AI KAF+AVEG Sbjct: 20 NTAANVASGVSASKAEVSATAPGQ---LRVIKRNGTVVPFEASKISVAITKAFLAVEGGT 76 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 A+ S R+ + + LTE + S +HIED+QDQVE SLM++G HKI R+YV+Y Sbjct: 77 AAASSRIHETVAKLTEMVTATFKRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIY 136 Query: 122 REERSDVRAAQSH-SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 RE+++ RAA+ S A ++ ++ DG+ + +RL +IV EAC+GL+DVS Sbjct: 137 REQQAVKRAARQSLSAETQQAADRINVVQLDGSKAPLDLERLHIIVSEACAGLEDVSESR 196 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L E +N+YDG+S +L T+L+ ++RTLIE+EPNY +AR L + LR E L T Sbjct: 197 ILDEALRNLYDGVSMQELSTSLVITARTLIEQEPNYTYASARLLCDNLRTEAL-TFLGVA 255 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + AT +M YP+ YI+ GV+ LL ++ D+DL L + ERD F YLGLQ Sbjct: 256 ESATQGDMDRYYPQALSAYIKRGVELELLDPTLADYDLEQLGAAILPERDLQFTYLGLQT 315 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYF+H + RIE+PQ FFMRVAMGLA++E +E RA+EFY LLSSF +M STPTLFN Sbjct: 316 LYDRYFIHSDEVRIELPQIFFMRVAMGLAVEEEHREARAIEFYRLLSSFDYMSSTPTLFN 375 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGK Sbjct: 376 AGTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGK 435 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMN Sbjct: 436 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMN 495 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP++V DLHDLYGK FE Y YE A GEIK + + Sbjct: 496 TANWIPDLFMKRVFDDGDWTLFSPNDVPDLHDLYGKAFEERYNTYEAMAANGEIKNHKTV 555 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVC Sbjct: 556 KAQNLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVC 615 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINL H N + +KL T+RTAVR+LDNVIDIN ++++ A+ SN HR +GLGL Sbjct: 616 NLGSINLPQHIDENGLNLEKLEQTVRTAVRMLDNVIDINYYSVDTARNSNFRHRPVGLGL 675 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+ HI Y S AVE AD SME IS++AI AS LA ERGAYSS++GSLW QG+ Sbjct: 676 MGFQDALYKQHIAYGSDAAVEFADRSMEAISYYAIDASSSLAAERGAYSSYEGSLWSQGI 735 Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 PIDS+ L + R + ++ T+ L W+ L+ VK GMRNSN MAIAPTATIANI GV Sbjct: 736 LPIDSLSKLVDERGSDYIKVDSTTTLDWESLRTSVKARGMRNSNVMAIAPTATIANITGV 795 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SQSI+P+YQNLYVKSN+SG+FTVVN +LVN+LK R LWD M++DLKY+DGS+ +IERIP Sbjct: 796 SQSIEPTYQNLYVKSNLSGEFTVVNPYLVNDLKARGLWDSVMVNDLKYYDGSVQSIERIP 855 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I++ AFE++P W++E ASRRQKWIDQAQSLNLY++ SGKKLD YR AW GLK Sbjct: 856 ADLRAIYSNAFEVEPKWIVECASRRQKWIDQAQSLNLYINNASGKKLDITYRMAWYSGLK 915 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 TTYYLRS +AT EKST+ G+LNAV + + +P +C+ D +CE CQ Sbjct: 916 TTYYLRSLAATGTEKSTI--ATGQLNAVSSS---AEPQPAPVPQACSLDDPDCEACQ 967 >gi|26987914|ref|NP_743339.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida KT2440] gi|24982623|gb|AAN66803.1|AE016309_5 ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440] Length = 959 Score = 1011 bits (2614), Expect = 0.0, Method: Composition-based stats. Identities = 556/956 (58%), Positives = 706/956 (73%), Gaps = 13/956 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QAQVPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++++ + P ++I + DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAKERATRANTDAVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ +G++ LL+ ++ DFDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ + A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL H + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLPNHIVDGKLDTTKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+D Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLD 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S +L E R + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +LK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSC-TSDTECEVCQ 954 LR+ +ATS EKST+ GKLNAV P + +P +C + +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ 959 >gi|152988045|ref|YP_001349578.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas aeruginosa PA7] gi|150963203|gb|ABR85228.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Pseudomonas aeruginosa PA7] Length = 963 Score = 1011 bits (2613), Expect = 0.0, Method: Composition-based stats. Identities = 558/960 (58%), Positives = 704/960 (73%), Gaps = 17/960 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QANAPQAADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D ++ LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE Sbjct: 68 SSRIHDTVRRLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ R + A P ++I DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAAERKNAGATSDVAQPHPSIRITRADGSLSPLDMGRLNTIISEACEGLAEVDGALIERE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + YIE+G + L+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMAELYAKALPAYIEKGAEFELVDAKLKEFDLEKLGKAIDHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGIRFELPQIFFMRVAMGLAIEEKDREARAIEFYNLLSSFDYMSSTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP +V DLHDLYGK FE YE YE A G++K+ + + A Sbjct: 487 IPDLFMKRVFDDGSWTLFSPSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL+ H + + D KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLVNHIVDGKLDTAKLEKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S A+ AD+SME IS++AI AS +LA ERGAY +F+GSLW QG+ PID Sbjct: 667 DALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPID 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S L E R + ++ + L W L++RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SEKKLIEERGAKYIEVDLSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DLK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETRWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------SSTHSLGIPSSCTSD-TECEVCQ 954 LR+ +ATS EKST+ GKLNAV + + +P +C+ D +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNPDCEACQ 963 >gi|53804298|ref|YP_114078.1| ribonucleotide-diphosphate reductase subunit alpha [Methylococcus capsulatus str. Bath] gi|53758059|gb|AAU92350.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylococcus capsulatus str. Bath] Length = 969 Score = 1009 bits (2608), Expect = 0.0, Method: Composition-based stats. Identities = 567/968 (58%), Positives = 707/968 (73%), Gaps = 28/968 (2%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P + P V+VI+RNG VT FD +KIS AI KAF+AVEG A Sbjct: 14 PLDATSAELRSLSPGE----------VRVIRRNGKVTGFDAAKISVAITKAFLAVEGGNA 63 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + ++ LT+ V LL+ +HIEDIQDQVE +LM++GH K+ R YVLYR Sbjct: 64 AASRRIHESVEELTDLVVRALLRRLPGGGTIHIEDIQDQVELALMRAGHQKVARAYVLYR 123 Query: 123 EERSDVRAAQS-HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 EER+ +RA + K+ +++ ++DGT ++ RL +VEEAC GL DV + Sbjct: 124 EERARLRAEKQNEGKAQGGAEDVVQVTLEDGTRKPLDTARLRHVVEEACRGLSDVEPAWI 183 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 + ET +N++DG+ E ++ L+ ++RT IE+E NY+ V AR LL+ LRRE L+ + Sbjct: 184 IEETRRNLFDGVPEKEVAPTLVMTARTRIEQESNYSYVAARLLLDALRREALSFLGHGAV 243 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 AT EM Y EYF Y++ GV+ LL + FDL L LK ERD F YLGLQ L Sbjct: 244 SATQDEMSERYGEYFKDYVKRGVELELLSPELARFDLQRLGEALKPERDLQFNYLGLQTL 303 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYF+H R E+PQAFFMRVAMGLA++E ++E+RA+EFY+LLSSF FM STPTLFN+ Sbjct: 304 YDRYFIHSGDIRFELPQAFFMRVAMGLAIQEVDREERAIEFYDLLSSFDFMSSTPTLFNA 363 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT PQLSSC+LTTVPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI GTNGKS Sbjct: 364 GTLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKS 423 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNT Sbjct: 424 QGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNT 483 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANW+PDLFMKRV + WTLFSP++ DLHDL G+ FE Y+ YE +ADRGEIK+++++ Sbjct: 484 ANWVPDLFMKRVAEEREWTLFSPNDTPDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLP 543 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 AV LWRKML+MLFETGHPW+ FKDPCN+R QH GVVHSSNLCTEITL+++ E AVCN Sbjct: 544 AVQLWRKMLSMLFETGHPWLAFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCN 603 Query: 602 LGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 LGS+NL AH + D +KL TI T +R+LDNVIDIN +++ +A++SN HR +GLG+ Sbjct: 604 LGSVNLAAHITPDGALDTEKLQRTIATGMRMLDNVIDINYYSVPQARRSNLRHRPVGLGI 663 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+ L +PYAS EAV AD SME +S++AI AS +LA ERG YSSF GSLW +G+ Sbjct: 664 MGFQDALYKLRLPYASQEAVAFADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWSRGI 723 Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDSI LL E R L M+R+ L W+ L++RV+T+GMRNSN MAIAPTATI+NICGVS Sbjct: 724 LPIDSIALLEEGRGGYLQMDRSQTLDWNALRERVRTVGMRNSNTMAIAPTATISNICGVS 783 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 QSI+P+YQNL+VKSN+SG+FTVVN +LV +LK LWD MI+DLKY+DGS+ IERIP+ Sbjct: 784 QSIEPTYQNLFVKSNLSGEFTVVNPYLVRDLKTLGLWDAVMINDLKYYDGSVQKIERIPE 843 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 LK+++ATAFEID WLIE+ SRRQKW+DQAQSLNLYL EPSGKKLD +Y+ AW+ GLKT Sbjct: 844 TLKQLYATAFEIDARWLIEAGSRRQKWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKT 903 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------------SSTHSLGIPSSCTS 946 TYYLRS AT VEKST DGKLNAV + + T + Sbjct: 904 TYYLRSLGATHVEKST--AFDGKLNAVKTDPIDDAIPGLRPLETVYADTRPAEPKACLID 961 Query: 947 DTECEVCQ 954 D CE CQ Sbjct: 962 DPTCEACQ 969 >gi|170720378|ref|YP_001748066.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas putida W619] gi|169758381|gb|ACA71697.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas putida W619] Length = 959 Score = 1009 bits (2608), Expect = 0.0, Method: Composition-based stats. Identities = 555/956 (58%), Positives = 704/956 (73%), Gaps = 13/956 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QALAPQAADSNQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR++ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDQ 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++++ + P ++I + DG+L + RL I+ EAC GL +V ++ E Sbjct: 128 RAKERATRANTDAAVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVAIKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLN-VADSAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + YI +GV+ LL+ ++ DFDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYIAKGVEFELLNPALADFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLAL+E +KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IKVF+ I A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL H + + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGFQ Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S AVE AD+SME +S+ AI AS +LA ERGAY +F+GSLW +G+ P+D Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLD 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S +L E R + +N L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SQQILIEARGQKYIDVNLEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 DLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPN----SSTHSLGIPSSCTSDTECEVCQ 954 LR+ +ATS EKST+ GKLNAV + ++ + + + +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGDSAPAQAAGPAPVPKACAIDEPDCEACQ 959 >gi|110635037|ref|YP_675245.1| ribonucleotide-diphosphate reductase subunit alpha [Mesorhizobium sp. BNC1] gi|110286021|gb|ABG64080.1| ribonucleoside-diphosphate reductase, alpha subunit [Chelativorans sp. BNC1] Length = 954 Score = 1008 bits (2607), Expect = 0.0, Method: Composition-based stats. Identities = 603/954 (63%), Positives = 736/954 (77%), Gaps = 5/954 (0%) Query: 4 SKDVNKGDEDAFPSLAYPFP---EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 + + A + P P E +VI+RNG VT FDPSKI+ A+ KAF+AVEG Sbjct: 3 ATATQLSNGSAAGPVFTPAPVEREAESAYRVIRRNGSVTPFDPSKIAIALTKAFLAVEGS 62 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 A+ S RV +++++LTEQ V L + N++ HIE+IQDQVE +LM+ GHHK+ R YVL Sbjct: 63 VAAGSRRVHEVVEDLTEQVVGALTRRNEAGRTFHIEEIQDQVELALMRDGHHKVARAYVL 122 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 Y R + ++ P L++M++DG+ + RL +VEEAC GL+ VS++ Sbjct: 123 Y--REERARERAATKTAENAAQPILQVMLEDGSKTPLDIARLTAVVEEACQGLEAVSAEA 180 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +LSE +N+YDG++ +L A I ++RTL+E EPNY++V+AR LL+KLRRE LT V +P Sbjct: 181 ILSEAQRNLYDGITLDELSLAPILAARTLVETEPNYSQVSARLLLDKLRREALTFVEGRP 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 +AT EM YP YF +I G++A ++ + FDL L LK ERD F+YLG Q Sbjct: 241 TQATQAEMVERYPAYFEGFIAAGIQAEMIDPELGRFDLKRLGAALKPERDLRFQYLGFQT 300 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH +G R E+PQAFFMRVAMGLAL+E ++E RA+EFY+L+S+F FMCSTPTLFN Sbjct: 301 LYDRYFLHEDGVRYELPQAFFMRVAMGLALREIDREARAIEFYDLISTFDFMCSTPTLFN 360 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSCFLTTV DDL GIF A+++NA+LAKYSGGLGNDWTPVRGLGA I GTNGK Sbjct: 361 AGTLRPQLSSCFLTTVSDDLDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGARIKGTNGK 420 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQG++PFLKVANDTA+AVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMN Sbjct: 421 SQGIVPFLKVANDTAIAVNQGGKRKGAVCAYLETWHVDIEEFLDLRKNTGDDRRRTHDMN 480 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANW+PDLFM+RV + WTLFSPDE DLHDLYG F+ AYE YE +A RGEI+VFR++ Sbjct: 481 TANWVPDLFMERVEADGEWTLFSPDETPDLHDLYGPAFKAAYEEYEARAARGEIRVFRQV 540 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 AV LWR+MLTMLFETGHPWITFKDPCN+RSPQ+H GVVHSSNLCTEITLN+S +E AVC Sbjct: 541 RAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQRHAGVVHSSNLCTEITLNTSKDEVAVC 600 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINL AH + D +KLA T+ TA+R+LDNVIDIN +TI +A++SN HR +GLGL Sbjct: 601 NLGSINLAAHVSEKGLDMEKLARTVATAMRMLDNVIDINFYTIPEARRSNLRHRPVGLGL 660 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL L +PYAS AVE AD SME I++HAISASVELA+ERGAY+SF+GSLW +GV Sbjct: 661 MGFQDALQTLRLPYASEGAVEFADRSMEAIAYHAISASVELAKERGAYASFEGSLWSKGV 720 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PIDS+ +AE R M+R + L W+ L+ RV GMRNSN MAIAPTATI+NICGVSQ Sbjct: 721 LPIDSLSFVAESRGVDGMDRGTTLDWESLRARVVEHGMRNSNTMAIAPTATISNICGVSQ 780 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNL+VKSNMSGDFTVVN+ LV++LK R LWDE M+SDLKY+DG +G I+R+PDD Sbjct: 781 SIEPAYQNLFVKSNMSGDFTVVNAALVHDLKARGLWDEVMVSDLKYYDGLLGQIDRVPDD 840 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK ++ATAFEIDP WLIE+ASRRQKWIDQAQSLNLY+ PSGKKLD +YR AW GLKTT Sbjct: 841 LKALYATAFEIDPAWLIEAASRRQKWIDQAQSLNLYIANPSGKKLDELYRLAWRKGLKTT 900 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 YYLRSRSAT VEKSTLK DGKLNAV V ++ G+ + D +CE CQ Sbjct: 901 YYLRSRSATHVEKSTLKRADGKLNAVAVMPQPAAFELEGVKACAIDDPDCEACQ 954 >gi|330811234|ref|YP_004355696.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379342|gb|AEA70692.1| Ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 963 Score = 1006 bits (2601), Expect = 0.0, Method: Composition-based stats. Identities = 552/960 (57%), Positives = 703/960 (73%), Gaps = 17/960 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ P L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QGTAPLAADSNPDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA +S + + P ++I DG+L + RL IV EAC GL++V ++ E Sbjct: 128 RAKERATRSPADAPVQAHPSIRIARADGSLAPLDMGRLNTIVTEACEGLEEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + + AT Sbjct: 188 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGL-SFLEVAESAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ +G++ LL+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMVDLYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IK+F+ + A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKD 546 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGS Sbjct: 547 LWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGS 606 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 INL H + + D KL T+ TAVR+LDNVIDIN +++ +AK SN HR +GLG+MGFQ Sbjct: 607 INLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQ 666 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+L HIPY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW QG+ P+D Sbjct: 667 DALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLD 726 Query: 725 SIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 S +L R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQSI Sbjct: 727 SQQILIAQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSI 785 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +LK Sbjct: 786 EPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELK 845 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 +++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYY Sbjct: 846 ELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTYY 905 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDP--------NSSTHSLGIPSSCTSDTECEVCQ 954 LR+ +ATS EKST+ GKLNAV + + + + +CE CQ Sbjct: 906 LRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963 >gi|209885873|ref|YP_002289729.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha carboxidovorans OM5] gi|209874069|gb|ACI93865.1| ribonucleoside-diphosphate reductase alpha subunit [Oligotropha carboxidovorans OM5] Length = 969 Score = 1005 bits (2599), Expect = 0.0, Method: Composition-based stats. Identities = 608/953 (63%), Positives = 737/953 (77%), Gaps = 13/953 (1%) Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 P P P + +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG A+ S RV +I++ Sbjct: 18 LSPESLAPSP-REPAMQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEIVE 76 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT++ VT L + HIED+QDQVE +LM+S HHK+ R YVLYREER+ RAA Sbjct: 77 GLTQEVVTNLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAAGK 136 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193 +++ P L++ + +GT + KRLE+I+ EA GL V VL+E +N+YDG+ Sbjct: 137 SAEAAVSNEPALQMTLANGTRAPLDIKRLELIIREAGEGLDGVDPAPVLAEARRNLYDGI 196 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 S+ +L A I ++RTL+E EPNYA V+AR LL+KLR EVLT +YK P A+ +M Y Sbjct: 197 SQDELALAPIMAARTLVEHEPNYAYVSARLLLDKLRSEVLTYLYKTPTSASQADMATRYA 256 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 EYF Y++ G++A LL + FDL LA+ LK ERD F++LGLQ LYDRYFLH+ GSR Sbjct: 257 EYFPVYVKAGIEAELLDPELGRFDLDRLASALKPERDLQFQFLGLQTLYDRYFLHVGGSR 316 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +E+PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT PQLSSCFL Sbjct: 317 LELPQAFFMRVAMGLAVREIDREARAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSCFL 376 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TTV DDL GIF A+++NA+LAKYSGGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVAND Sbjct: 377 TTVADDLDGIFKAVKDNALLAKYSGGLGNDWTNVRGLGAHIKGTNGESQGVVPFLKVAND 436 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+RV Sbjct: 437 TAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRV 496 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ WTLFSPDE DLHDLYG F+ AYE YE +A RGEI VF+++ A LWR+MLTML Sbjct: 497 EEDGTWTLFSPDETPDLHDLYGPAFKAAYEGYEAKAARGEIHVFKEMRATDLWRRMLTML 556 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 FETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINLL H Sbjct: 557 FETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHTTR 616 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 ++DKL TI TAVR+LDNVIDIN +TI +A++SN HR +GLGLMGFQ ALH+ IP Sbjct: 617 EGLNHDKLKRTIATAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHIQRIP 676 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S AV ADESME IS+HAISASV+LA ERG Y SF+GSLW QG+ PIDS+ +LA+ R Sbjct: 677 ITSDAAVAFADESMEIISYHAISASVDLAGERGRYPSFEGSLWSQGMLPIDSVSILAKAR 736 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++ ++ L W L++RVKT GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKS Sbjct: 737 NGAPLDTSATLDWSGLRERVKTDGMRNSNVMAIAPTATISNICGVTQSIEPAYQNLYVKS 796 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NMSGDFTVVN FLV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++AT FEID Sbjct: 797 NMSGDFTVVNEFLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATVFEIDT 856 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 WLI++A+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW +GLKTTYYLRSRSAT VEK Sbjct: 857 SWLIQAAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHVEK 916 Query: 914 STLKGVDGKLNAVPVTDPNS------------STHSLGIPSSCTSDTECEVCQ 954 STLKG DGKLNAV + P++ + G+ + + +CE CQ Sbjct: 917 STLKGTDGKLNAVSASIPSAQQHAPIVVPNDTAPDLTGVKACSIDNPDCEACQ 969 >gi|146308171|ref|YP_001188636.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas mendocina ymp] gi|145576372|gb|ABP85904.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas mendocina ymp] Length = 968 Score = 1004 bits (2596), Expect = 0.0, Method: Composition-based stats. Identities = 556/966 (57%), Positives = 709/966 (73%), Gaps = 24/966 (2%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + V D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QAVAPQGADSSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 +++ R A + S+ P P ++I DG+L + RL+ I+ EAC GL +V ++ E Sbjct: 128 QANKRKASAGSEIAQP-HPSIRITAADGSLQPLDMGRLQTIIREACEGLAEVDGALIERE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E L T Q AT Sbjct: 187 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEAL-TFLGITQSAT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+++GV+ LL + ++DL L L +ERD F YLGLQ LYDR Sbjct: 246 HHEMVDLYAKALPAYVDKGVEFELLDPKLKEYDLEKLGKALNHERDQQFTYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 YF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 YFIHKDGIRFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGT 365 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYSAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTAN Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTAN 485 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV ++ WTLFSP EV DLHDL GK FE YE YE + G+IK+++ I A Sbjct: 486 WIPDLFMKRVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAK 545 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+NL+ H + + D +KL T++TAVR+LDNVIDIN +++ +A+ SN HR +GLGLMGF Sbjct: 606 SVNLVNHIVDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGF 665 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HI Y S A+E AD SME IS++AI AS +LA+ERGAYS+F+GSLW +G+ P+ Sbjct: 666 QDALYLQHIAYGSDAAIEFADRSMEAISYYAIQASCDLAEERGAYSTFEGSLWSKGILPL 725 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS +L E R + ++ + L W L++RVK G+RNSN MAIAPTATI+NI GVSQS Sbjct: 726 DSQQILIEARGQKYIDVDLSESLDWAPLRERVKK-GIRNSNIMAIAPTATISNIIGVSQS 784 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DL Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDL 844 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 845 KDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------------SSTHSLGIPSSCTSDT 948 YLR+ +ATS EKST+ GKLNAV + + + + Sbjct: 905 YLRALAATSTEKSTIN--TGKLNAVSAGGDEGFSAKAQAPAQQAAPAPAPVPKACAIDEP 962 Query: 949 ECEVCQ 954 +CE CQ Sbjct: 963 DCEACQ 968 >gi|77460467|ref|YP_349974.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas fluorescens Pf0-1] gi|77384470|gb|ABA75983.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas fluorescens Pf0-1] Length = 964 Score = 1004 bits (2596), Expect = 0.0, Method: Composition-based stats. Identities = 555/961 (57%), Positives = 700/961 (72%), Gaps = 18/961 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QGTLPQAADSNSDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDA 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 RS RA ++ +++ P ++I DG+L + RL IV EAC GL +V ++ E Sbjct: 128 RSKERATRTTAEAPVQAHPSIRITRADGSLAPLDMGRLNTIVTEACEGLAEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 188 TLKNLYDGVALNDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVAESAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ +G++ LL+ + FDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYVAKGIEFELLNPVLASFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGVRFELPQIFFMRVAMGLAIEEKQKEDRAIEFYNLLSSFDYMASTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE G+IK+F+ I A Sbjct: 487 IPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYPGKIKLFKTIQAK 546 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 547 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 606 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL H + + D KL TI AVR+LDNVIDIN +++ +AK SN HR +GLG+MGF Sbjct: 607 SINLPNHIVDGKLDTAKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGF 666 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HIPY S AVE AD+SME +S++AI AS +LA ERG+Y +F+GSLW +GV P+ Sbjct: 667 QDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGVLPL 726 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS +L E R + ++ T L W ++ RV+ G+RNSN MAIAPTATIANI GVSQS Sbjct: 727 DSQQILIEARGQKYIDVDLTESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 785 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +L Sbjct: 786 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQEL 845 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 846 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 905 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDP--------NSSTHSLGIPSSCTSDTECEVC 953 YLR+ +ATS EKST+ GKLNAV + + + + +CE C Sbjct: 906 YLRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEAC 963 Query: 954 Q 954 Q Sbjct: 964 Q 964 >gi|119504229|ref|ZP_01626309.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2080] gi|119459737|gb|EAW40832.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2080] Length = 964 Score = 1003 bits (2594), Expect = 0.0, Method: Composition-based stats. Identities = 566/955 (59%), Positives = 716/955 (74%), Gaps = 10/955 (1%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 + V + L P + ++VIKRNG VTSF+ SKIS AI KAF+AVEG A+ Sbjct: 16 TAPVTGTGNTSSGRLQATAPGQ---LRVIKRNGTVTSFEDSKISVAITKAFLAVEGGTAA 72 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ + + LTEQ +T + S +HIEDIQDQVE +LM++G HKI R+YV+YRE Sbjct: 73 ASSRIHETVAKLTEQVITTFKRRMPSGGTIHIEDIQDQVELALMRAGEHKIARDYVIYRE 132 Query: 124 ERSDVRAAQSHSKSD-APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ER+ RAA++ + A + ++M DG+ N +R+ IV EAC+ L DVS ++ Sbjct: 133 ERARDRAAKAALSPESQAAASGINVVMPDGSREPLNIERVRTIVSEACADLVDVSESAII 192 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 E +N+YDG++ ++ T+L+ ++RT+IE++PNY+ V AR LL+ LR E L + + Sbjct: 193 DEALRNLYDGVTADEVSTSLVITARTMIEQDPNYSYVAARLLLDNLRAESLNYL-GVAKS 251 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 AT +M LY E +I +GV LL +++FD+ L L ERD F YLGLQ LY Sbjct: 252 ATQSDMAQLYSEALSAFIHQGVTLELLSPELLEFDIAALGQALLPERDLQFSYLGLQTLY 311 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 DRYF+H + RIE+PQ FFMRVAMGL+++E + RA+EFY LLSSF +M STPTLFNSG Sbjct: 312 DRYFIHADEVRIELPQVFFMRVAMGLSIREDDPNTRAIEFYQLLSSFDYMSSTPTLFNSG 371 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ Sbjct: 372 TLRSQLSSCYLTTVPDDLFGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQ 431 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G++PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA Sbjct: 432 GIVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 491 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 NWIPDLFMKRV ++ WTLFSP++V DLHDLYG+ FE Y YE A GEI+V + + A Sbjct: 492 NWIPDLFMKRVFEDGDWTLFSPNDVPDLHDLYGRAFEDRYAQYEAMAASGEIRVHKTLKA 551 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 A+WRKML M+FETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNL Sbjct: 552 QAVWRKMLGMIFETGHPWVTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEIAVCNL 611 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL H + + + KL +T+RTA+R+LDNVIDIN +++ +A++SN HR IGLG+MG Sbjct: 612 GSVNLPQHIEDGKLNLKKLRATVRTAIRMLDNVIDINYYSVPQAEQSNMRHRPIGLGIMG 671 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+ + + YAS AV AD+SME +S+ AI AS ELA ERGAYSS++GSLW QGVFP Sbjct: 672 FQDALYKIDVSYASKGAVSFADQSMEAVSYFAIEASSELAAERGAYSSYEGSLWSQGVFP 731 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS+ +L E R + +NR W ELK RV GMRNSNCMAIAPTATIANI GVSQ Sbjct: 732 LDSLDILVEQRGANYIEVNRDMTFDWPELKGRVAKHGMRNSNCMAIAPTATIANITGVSQ 791 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTVVN +LV +LK RDLWD+ M++DLKY DGS+ +I+RIPDD Sbjct: 792 SIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARDLWDKVMVNDLKYFDGSVQSIDRIPDD 851 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK ++TAFEI+P WL++SASRRQKWIDQAQSLNLY++ SGKKLD YR AW GLKTT Sbjct: 852 LKAKYSTAFEIEPRWLVDSASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWYSGLKTT 911 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 YYLRS +AT EKST++ GKLNAV S+ +P +C+ D +CE CQ Sbjct: 912 YYLRSLAATGTEKSTVE--SGKLNAVASGAAESTPQPAPVPQACSLDDPDCEACQ 964 >gi|220935778|ref|YP_002514677.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219997088|gb|ACL73690.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 971 Score = 1003 bits (2593), Expect = 0.0, Method: Composition-based stats. Identities = 583/956 (60%), Positives = 722/956 (75%), Gaps = 8/956 (0%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 + +V+ + LA P + VI+RNG VT+FD SKI AI KAF+AVEG A+ Sbjct: 19 APEVSPESQVTAAELAATAPGQH---HVIRRNGKVTAFDASKIKVAITKAFLAVEGGNAA 75 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSAL-IVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 S R+ DI+ L EQ L + + VHIEDIQDQVE +LM+ GHHKI R YVLYR Sbjct: 76 ASRRIHDIVAELAEQVCENLFRRAGGSAVTVHIEDIQDQVELALMRGGHHKIARAYVLYR 135 Query: 123 EERSDVRAAQSHSKSDAPIAP--KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 E+++ RAA++ ++ A A + + DGT ++ RL +VEEAC+GL+ V ++ Sbjct: 136 EQQAQKRAAEAATRKPARQAEAAVIHVTRPDGTRAPLDTARLVKVVEEACAGLEAVDGQL 195 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L+E +N++DG++E D+ TAL+ S+R LIEKEPNY++VTAR L++ LRRE L+ + P Sbjct: 196 ILNEAQRNLFDGVAEKDVGTALVMSARVLIEKEPNYSQVTARLLMDTLRREALSFIAGLP 255 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 Q AT EM YPEYF Y++ + LL + +DL L LK ERD F YLGLQ Sbjct: 256 QAATQAEMTQRYPEYFKAYVKRAAELELLDSELTRYDLDRLGAALKPERDLQFTYLGLQT 315 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYF+H G R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM STPTLFN Sbjct: 316 LYDRYFIHSGGVRFELPQAFFMRVAMGLAIHEIDREGRAIEFYNLLSSFDFMSSTPTLFN 375 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGT PQLSSC+LTTVPDDL GIFGA+++NA+L+K++GGLGNDWT VRG+GAHI GTNGK Sbjct: 376 SGTLRPQLSSCYLTTVPDDLDGIFGAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGK 435 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+DVEEF++LRKNTGDDRRRTHDMN Sbjct: 436 SQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHVDVEEFIELRKNTGDDRRRTHDMN 495 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 +ANWIPDLFMKRV + WTLFSP+E DLHDL G+ FE Y YE +A RGEIKVF+K+ Sbjct: 496 SANWIPDLFMKRVAEEGEWTLFSPNETPDLHDLVGEAFEQRYAEYEAKAARGEIKVFKKL 555 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 AV LWRKML MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVC Sbjct: 556 KAVDLWRKMLAMLFETGHPWMTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVC 615 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGS+NL AH N + +KL T+ TA+R+LDNVID N +++ +A++SN HR +GLG+ Sbjct: 616 NLGSVNLAAHVDENGLNLEKLERTVSTAMRMLDNVIDYNYYSVPQARRSNLRHRPVGLGI 675 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+ IPYAS +AVE AD SME +S++AI AS +LA+ERG Y SF GSLW QGV Sbjct: 676 MGFQDALYQQRIPYASEDAVEFADRSMEAVSYYAIKASTDLAEERGRYQSFDGSLWSQGV 735 Query: 721 FPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDSI LLA+ R L + + WD L+ RVKT+GMRNSN MAIAPTATI+NICGVS Sbjct: 736 LPIDSIELLAKSRGQYLQQDTSMTFDWDSLRDRVKTVGMRNSNTMAIAPTATISNICGVS 795 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 QSI+P+YQNL+VKSN+SG+FTV+N LVN+LK R LWDE M++DLKY+DGS+ I+R+P Sbjct: 796 QSIEPTYQNLFVKSNLSGEFTVINPNLVNDLKARKLWDEVMVNDLKYYDGSVQPIDRVPA 855 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK+++ATAFE+D WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKT Sbjct: 856 DLKQLYATAFELDARWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKT 915 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 TYYLRS AT VEKST+ V +++ + P C+ D ECE CQ Sbjct: 916 TYYLRSMGATHVEKSTVADASRANKLNAVKGADAAAPATEAPKMCSILDPECEACQ 971 >gi|70731822|ref|YP_261564.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas fluorescens Pf-5] gi|68346121|gb|AAY93727.1| ribonucleoside-diphosphate reductase, alpha chain [Pseudomonas fluorescens Pf-5] Length = 963 Score = 1003 bits (2593), Expect = 0.0, Method: Composition-based stats. Identities = 550/961 (57%), Positives = 701/961 (72%), Gaps = 17/961 (1%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S+ D+ L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SQANAPQAADSTQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA +S S+ P ++I DG+ + RL IV EAC GL++V ++ Sbjct: 127 SRAKERATRSTSEEPVQAHPSIRITRTDGSFAPLDMGRLNTIVSEACEGLEEVDGDLIQR 186 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + + A Sbjct: 187 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLEVAESA 245 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ +G++ LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 246 THHEMAELYAKALPAYVAKGIEFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 305 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E ++E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKQREDRAIEFYNLLSSFDYMASTPTLFNAGT 365 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 485 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE + +IK+F+ + A Sbjct: 486 WIPDLFMKRVFDDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKTVQAK 545 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL H + + D KL T+ TAVR+LDNVIDIN +++ +AK SN HR +GLG+MGF Sbjct: 606 SINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGF 665 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HI Y S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+ Sbjct: 666 QDALYLQHIAYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQS Sbjct: 726 DSQQILIEARGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +L Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQEL 844 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K+++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 845 KELYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDP--------NSSTHSLGIPSSCTSDTECEVC 953 YLR+ +ATS EKST+ GKLNAV + + + + +CE C Sbjct: 905 YLRALAATSTEKSTIN--TGKLNAVSSGGNHGDDSVLAAPAGPAPVPKACAIDEPDCEAC 962 Query: 954 Q 954 Q Sbjct: 963 Q 963 >gi|192291020|ref|YP_001991625.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodopseudomonas palustris TIE-1] gi|192284769|gb|ACF01150.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 974 Score = 1002 bits (2591), Expect = 0.0, Method: Composition-based stats. Identities = 590/958 (61%), Positives = 720/958 (75%), Gaps = 17/958 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 + QVI+R+G V+ FD SKI+ A+ KAF+AVEG A+ S RV D + Sbjct: 18 PLASADVVAGAAHETSYQVIRRSGEVSPFDASKIAVALTKAFLAVEGSNAAASRRVHDTV 77 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LT+Q V L + HIEDIQDQ E +LM+S HHK+ R YV+YREER+ RA + Sbjct: 78 AELTDQIVANLTRRVGPGRTFHIEDIQDQAELALMRSEHHKVARAYVIYREERTRERA-K 136 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + + P+AP L+ DGTL + +RL I+ EAC+GL VS VL+ET +N+YDG Sbjct: 137 AAAAQVKPVAPALRTKSADGTLHLIDMQRLAAIIAEACAGLDGVSVDAVLAETQRNLYDG 196 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +S+ +L A I ++R +E EP+YAKV+AR LL+KLRRE L+ V +P +AT +M Y Sbjct: 197 ISDDELALAPILAARIFVETEPDYAKVSARLLLDKLRREALSFVEGRPHQATQAQMAERY 256 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 +YF Y++ G+ L+ + FD+ LA +K ERD F+YLGLQ LYDRYFLH++G+ Sbjct: 257 ADYFSAYVKAGIAHELIDPEIGRFDVSKLAAAIKPERDLQFDYLGLQTLYDRYFLHVHGT 316 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQAFFMRVA G+AL+E ++E +A+EFY+LLSSF FM STPTLFN+GT PQLSSCF Sbjct: 317 RFELPQAFFMRVACGIALREVDREAKAIEFYDLLSSFDFMASTPTLFNAGTLRPQLSSCF 376 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQG++PFLKVAN Sbjct: 377 LTTVPDDLDGIFKSIKDNALLSKYAGGLGNDWTHVRGLGAHIKGTNGESQGIVPFLKVAN 436 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+R Sbjct: 437 DTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQR 496 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V QN WTLFSPDE DLHDL G+ F Y YE +A RGE++V ++I AV LWR+MLTM Sbjct: 497 VEQNGPWTLFSPDETPDLHDLTGRAFAERYAFYEARAARGELRVTKQIRAVDLWRRMLTM 556 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S E AVCNLGS+NL+ H Sbjct: 557 LFETGHPWITFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSEREVAVCNLGSVNLVNHVV 616 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D +L T+ TA+R+LDNVID+N +TI +A+ SN HR +GLGLMGFQ AL++L + Sbjct: 617 DGRLDCARLERTVTTAMRMLDNVIDVNFYTIPEARASNLRHRPVGLGLMGFQDALNILRL 676 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS EAV ADESME I++ +ISASV+LA ERG Y+S+ GSLW QG+ P+DSI LL E Sbjct: 677 PYASDEAVAFADESMEAIAYWSISASVDLAAERGRYASYDGSLWSQGILPLDSIDLLDEA 736 Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R + ++R SRL W+ L+KRV GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYV Sbjct: 737 RGAAIEVDRGSRLDWEALRKRVTATGMRNSNVMAIAPTATISNICGVSQSIEPAYQNLYV 796 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSNMSGDFTVVN+ LV +LK R LWDE MISDLKY DGS+G I+R+PDDLK ++ATAFEI Sbjct: 797 KSNMSGDFTVVNTHLVRDLKGRGLWDEVMISDLKYFDGSLGQIDRVPDDLKALYATAFEI 856 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 D WLIE+A+RRQKWIDQAQSLNLYL PSGK LD +YR AW GLKTTYYLRSRSAT V Sbjct: 857 DATWLIEAAARRQKWIDQAQSLNLYLANPSGKTLDALYRLAWRRGLKTTYYLRSRSATHV 916 Query: 912 EKSTLKGVDGKLNAVPV--------------TDPNSSTHSLGIPSSC-TSDTECEVCQ 954 EKSTL+G DGKLNAV N + G +C D CE CQ Sbjct: 917 EKSTLRGTDGKLNAVSAIILPTASAEPSRSNGAGNGHAATEGWGKACAIDDPGCEACQ 974 >gi|289208616|ref|YP_003460682.1| ribonucleoside-diphosphate reductase, subunit alpha [Thioalkalivibrio sp. K90mix] gi|288944247|gb|ADC71946.1| ribonucleoside-diphosphate reductase, alpha subunit [Thioalkalivibrio sp. K90mix] Length = 964 Score = 1002 bits (2591), Expect = 0.0, Method: Composition-based stats. Identities = 567/964 (58%), Positives = 716/964 (74%), Gaps = 10/964 (1%) Query: 1 MHPSKDVNKGDEDAF-PSLAYPFPEKIK----GVQVIKRNGGVTSFDPSKISRAIMKAFM 55 M+ + E P A P E + QVI+RNG VT FD SKI A+ KAF+ Sbjct: 1 MYSDTQTAEAQEGIQYPPQAEPSAEVLATSPGQHQVIRRNGKVTGFDASKIEVAVTKAFL 60 Query: 56 AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL-IVHIEDIQDQVECSLMQSGHHKI 114 AVEG A+ S R+ ++ K + Q V L + + VHIEDIQDQVE +LM+ GHHK+ Sbjct: 61 AVEGGNAAASRRIHEVSKEVAGQVVDSLFRRAGTQGMTVHIEDIQDQVELALMRGGHHKV 120 Query: 115 TREYVLYREERSDVRAAQ--SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172 R YV+YRE+++ RAA+ S + A L + DGT + RL+ +V EAC G Sbjct: 121 ARAYVIYREQQAQKRAAEAAEQSPEEQEAAAALNVTRADGTQAPLDEARLQAVVAEACDG 180 Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 ++ V + +L+E +N++DG++E D+ TAL+ ++R +IEKEPNY++VTAR L++ LRRE Sbjct: 181 IEHVDGEKILTEARRNLFDGVAEKDVATALVMAARVMIEKEPNYSEVTARLLMDALRREA 240 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 L+ V+ +P++AT ++ Y EYF YI L+ + +DL L +K ERD Sbjct: 241 LSFVHGRPEEATQAQLAERYAEYFGAYIRRAADLELVDSELTRYDLDKLGAAIKPERDLQ 300 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 F YLGLQ LYDRYF+H +G+R E+PQAFFMRVAMGLA+ E ++E RA+EFYNLLSSF FM Sbjct: 301 FTYLGLQTLYDRYFIHSDGTRFELPQAFFMRVAMGLAINEIDREARAIEFYNLLSSFDFM 360 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 STPTLFNSGT PQLSSC+LT+VPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GA Sbjct: 361 SSTPTLFNSGTLRPQLSSCYLTSVPDDLDGIYSAIRDNALLSKFAGGLGNDWTRVRGMGA 420 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 HI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF++LRKNTGDD Sbjct: 421 HIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFIELRKNTGDD 480 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 RRRTHDMN+ANWIPDLFMKRV ++ WTLFSP+E DLHDL G +FE Y YE +A RG Sbjct: 481 RRRTHDMNSANWIPDLFMKRVAEDGDWTLFSPNETPDLHDLVGTDFEKRYCEYEEKAARG 540 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E++V + + AV LWRKML MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+ Sbjct: 541 ELRVHKTMKAVDLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHTGVVHSSNLCTEITLNT 600 Query: 593 SSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 S +E AVCNLGSINL AH + D DKL T+ TA+R+LDNVID N +++ +A++SN Sbjct: 601 SDDEIAVCNLGSINLAAHINEAGELDQDKLEQTVNTAMRMLDNVIDYNYYSVPQARRSNL 660 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 HR +GLG+MGFQ AL+ L +PYAS AVE AD SME +S++AI AS +LA+ERG Y SF Sbjct: 661 RHRPVGLGIMGFQDALYKLRMPYASEAAVEFADTSMEAVSYYAIKASTDLAEERGRYESF 720 Query: 712 KGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 GSLW QG+ PIDS+ LAE R L M+ T RL WD+L+KRVK +GMRNSN MAIAPTA Sbjct: 721 PGSLWSQGILPIDSVEKLAETRGDYLQMDTTQRLEWDKLRKRVKKVGMRNSNTMAIAPTA 780 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 TI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK R+LWDE M++DLKY+DGS Sbjct: 781 TISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVRDLKDRELWDEVMVNDLKYYDGS 840 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 + ++R+PDDLK ++ATAFE+D WL+E+ASRRQKWIDQAQSLNLY+ EPSG KLD +Y+ Sbjct: 841 VQPLDRVPDDLKALYATAFELDTRWLVEAASRRQKWIDQAQSLNLYMAEPSGPKLDALYK 900 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW+ GLKTTYYLRS AT VEKST+ V+ ++ + D +C Sbjct: 901 LAWVRGLKTTYYLRSMGATHVEKSTVADSSRANKLNAVSGGQQASEPEAPKACSILDPDC 960 Query: 951 EVCQ 954 E CQ Sbjct: 961 EACQ 964 >gi|312962585|ref|ZP_07777075.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6] gi|311283165|gb|EFQ61756.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6] Length = 963 Score = 1002 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 552/960 (57%), Positives = 698/960 (72%), Gaps = 17/960 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QGSVPQAADSNMDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA + + P ++I + DG+ + RL I+ EAC GL++V ++ E Sbjct: 128 RAKERAVHAPAAEAVQAHPSIRITLADGSFAPLDLGRLNTIITEACEGLEEVDGDLIQRE 187 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L AT Sbjct: 188 TLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 246 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + YI +G++ LL+ + FDL L + +ERD F YLGLQ LYDR Sbjct: 247 HHEMADLYAKALPAYIAKGIEFELLNPVLATFDLEKLGKAINHERDQQFTYLGLQTLYDR 306 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 YFIHKDGIRFELPQVFFMRVAMGLAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGTL 366 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 367 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 426 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 427 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 486 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKISAV 543 IPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE A G+IK+F+ I A Sbjct: 487 IPDLFMKRVFDDGQWTLFSPSEVPDLHDLTGKAFEERYEYYEALAQYPGKIKLFKTIQAK 546 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 547 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 606 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL H N + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MGF Sbjct: 607 SINLPNHIVNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGF 666 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HIPY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+ Sbjct: 667 QDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 726 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQS Sbjct: 727 DSQQILIEQRGQKYIDVDLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 785 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP +L Sbjct: 786 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQEL 845 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 846 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 905 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECEVCQ 954 YLR+ +ATS EKST+ GKLNAV + + + + + +CE CQ Sbjct: 906 YLRALAATSTEKSTIN--TGKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEACQ 963 >gi|224825452|ref|ZP_03698557.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella nitroferrum 2002] gi|224602373|gb|EEG08551.1| ribonucleoside-diphosphate reductase, alpha subunit [Lutiella nitroferrum 2002] Length = 949 Score = 1002 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 555/953 (58%), Positives = 690/953 (72%), Gaps = 17/953 (1%) Query: 9 KGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68 +G A A + I+RNG V F+P KIS A+ KAF+A+ G + S + Sbjct: 7 EGQTAAELGRAAAPQADFSQYKTIRRNGAVVPFEPVKISIAMTKAFLAIMGHQGATSASI 66 Query: 69 QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128 +D + LTE V+ L++ +HIEDIQDQVE SLM++G H + R YVLYREERS Sbjct: 67 RDKVAQLTEMVVSALMRRKPEGGAIHIEDIQDQVELSLMRAGEHDVARAYVLYREERSRE 126 Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188 RAA+ + + + ++ +G + + +L +E AC GL + +L+ET KN Sbjct: 127 RAARGEALTQI----TINVVRKNGAKLPLDIAKLRATIESACVGLAETDVDAILTETLKN 182 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +YDG+SE ++ + I ++R +IE++P Y VTAR LL +R E+L + + EM Sbjct: 183 IYDGVSEEEVNKSAILAARAMIEQDPAYDYVTARLLLNNIRLEILG------EAVSQEEM 236 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Y YF + I++G+ A LL E + ++DL L L RD F YLGLQ LYDRYFLH Sbjct: 237 GECYVSYFPQAIKKGIAAELLDERLGEYDLKKLGAALDASRDLQFGYLGLQTLYDRYFLH 296 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +NG+RIEMPQAF+MRVAMGLAL E E+E RA+EFYN+LSSF FM STPTLFNSGTR QL Sbjct: 297 VNGTRIEMPQAFYMRVAMGLALNEVEREARAIEFYNVLSSFDFMSSTPTLFNSGTRRSQL 356 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSC+LTT+ DDL GI+ ++ENA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFL Sbjct: 357 SSCYLTTIADDLDGIYEGIKENALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFL 416 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDL Sbjct: 417 KVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDL 476 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV A WTL SP E DLHDL G FE Y+ YE A RGEIKV ++I A++LWRK Sbjct: 477 FMKRVMDGAEWTLLSPSECPDLHDLVGAAFEKRYQEYEAMAARGEIKVSKRIPALSLWRK 536 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 MLTMLFETGHPWITFKDPCNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL Sbjct: 537 MLTMLFETGHPWITFKDPCNIRSPQGHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLA 596 Query: 609 AHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 H + D KL TIR A+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ L Sbjct: 597 RHMQADGTLDGAKLQRTIRIAMRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCL 656 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 H+ IPYAS EAVE ADESME +++HA AS ELAQERG Y S+KGSLWD+GV P DSI Sbjct: 657 HMKRIPYASQEAVEFADESMELVAYHAYWASSELAQERGRYPSYKGSLWDRGVLPHDSIN 716 Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 LLA R L ++RT RL W++L++R+K GMRNSNC+AIAPTATIANI GVS SI+P+Y Sbjct: 717 LLAAERGGYLDVDRTERLDWNKLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTY 776 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 QNL+VKSN+SG+FTV N LV +LK+ LWDE M+SDLKY DGS+G I+RIP +LK I+A Sbjct: 777 QNLFVKSNLSGEFTVTNEHLVRDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYA 836 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE+DP WL+++ASRRQKWIDQAQSLNLY+ SGKKLD +Y+ AW+ GLKTTYYLR+ Sbjct: 837 TAFEMDPKWLVDAASRRQKWIDQAQSLNLYMAGASGKKLDELYKYAWVRGLKTTYYLRTL 896 Query: 907 SATSVEKST-----LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +ATS EKST L V AV +T + + +CE CQ Sbjct: 897 AATSAEKSTGRGGELNAVSATTPAVSAAPEVDNTPATDAKFCSIDNPDCEACQ 949 >gi|90425008|ref|YP_533378.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodopseudomonas palustris BisB18] gi|90107022|gb|ABD89059.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris BisB18] Length = 960 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 593/947 (62%), Positives = 732/947 (77%), Gaps = 9/947 (0%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 PS+ G ++I+RNG VT FDP+KI+ A+ KAF+AVEG A+ S R+ D++ L Sbjct: 15 PSVVEHVTAANPGYRLIRRNGTVTRFDPTKITLALTKAFLAVEGSSAASSRRIHDVVGGL 74 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 T+Q V+ L + IED+QDQVE +LM+ +HK+ R YVLYRE+R+ R + + Sbjct: 75 TQQIVSSLTRRADLGHTFLIEDVQDQVELALMRGEYHKVARAYVLYREDRAKQRIESAQN 134 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 P +P L++ DG ++ ++ RL +VEEAC+GL DV + VLSET +N+YDG+S Sbjct: 135 AQLEPASP-LRVTATDGIVVPLDAVRLAAVVEEACAGLDDVRASQVLSETRRNLYDGISL 193 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +L A I ++RTLIE EPNYAKV+AR LL+KLRRE L+ V +P++ATH EM Y +Y Sbjct: 194 DELALAPILAARTLIETEPNYAKVSARLLLDKLRREALSFVAGRPEQATHAEMAGRYGDY 253 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F YI G+ + LL + FDLV L+ LK ERD F+YLGLQ LYDRYFLH++G+R E Sbjct: 254 FKAYIATGIASELLDRELGRFDLVRLSAALKPERDLQFDYLGLQTLYDRYFLHVDGTRFE 313 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQAFFMRVA GLAL+E ++E +A+EFY LLSSF FM STPTLFN+GT PQLSSCFLTT Sbjct: 314 LPQAFFMRVACGLALREIDREDKAIEFYELLSSFDFMASTPTLFNAGTLRPQLSSCFLTT 373 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPDDL GIF ++++NA+L+KY+GGLGNDWT VRGLGAHI GTNG+SQGV+PFLKVANDTA Sbjct: 374 VPDDLDGIFKSIKDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGESQGVVPFLKVANDTA 433 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +AVNQGGKRKGAVCAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFM RV Q Sbjct: 434 IAVNQGGKRKGAVCAYLETWHIDIEQFLDLRKNTGDDRRRTHDMNTANWVPDLFMTRVEQ 493 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + GWTLFSPDE DLHDL G+ F YE YE +A+RGE++VF+++ A LWRKMLTMLFE Sbjct: 494 DGGWTLFSPDETPDLHDLTGQAFVERYEQYEAKAERGEMRVFKRLRAADLWRKMLTMLFE 553 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S+ E AVCNLGSINL+ H N Sbjct: 554 TGHPWITFKDPCNLRSPQSHAGVVHSSNLCTEITLNTSTTEVAVCNLGSINLVNHLVNGA 613 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+ +LA ++ T +R+LDNV+D+N +TI +A+ SN HR +GLG+MGFQ AL++L +PYA Sbjct: 614 IDHARLARSVGTGMRMLDNVLDVNFYTIPEARSSNLKHRPVGLGIMGFQDALNILRLPYA 673 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734 S +AV ADESME +S+ AISASV+LA ERG Y SF+GSLW +GV P+DSI + R Sbjct: 674 SEQAVAFADESMESVSYWAISASVDLAAERGRYPSFEGSLWSKGVLPLDSIARVDAARAL 733 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + ++R+ RL WD L+ RVK +GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN Sbjct: 734 PVEVDRSFRLDWDGLRARVKAVGMRNSNTMAIAPTATISNICGVSQSIEPAYQNLYVKSN 793 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 MSGDFTVVN++LVN+LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEID Sbjct: 794 MSGDFTVVNTYLVNDLKARGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDSA 853 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 WLIE+A+RRQKWIDQ+QSLNLYL P+GKKLD +YR AW GLKTTYYLRSRSAT VEKS Sbjct: 854 WLIEAAARRQKWIDQSQSLNLYLANPNGKKLDALYRLAWRRGLKTTYYLRSRSATHVEKS 913 Query: 915 TLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECEVCQ 954 TLKG DGKLNAV + ++ + D CEVCQ Sbjct: 914 TLKGTDGKLNAVSAGLAMDTPRAVAVACGAVAGQACAIDDPTCEVCQ 960 >gi|261855610|ref|YP_003262893.1| ribonucleotide-diphosphate reductase subunit alpha [Halothiobacillus neapolitanus c2] gi|261836079|gb|ACX95846.1| ribonucleoside-diphosphate reductase, alpha subunit [Halothiobacillus neapolitanus c2] Length = 957 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 556/952 (58%), Positives = 699/952 (73%), Gaps = 9/952 (0%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 A S ++VI+RNG VT+FD SKI A+ KAF+AVEG GA+ Sbjct: 13 PTTAHSAPSAAHSTIDTAATTPGQLRVIRRNGKVTAFDDSKIKVAMTKAFLAVEGSGAAV 72 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S+RV D++ L++Q + L + VHIEDIQDQVE +LM+ GHHK+ R YVLYRE Sbjct: 73 SMRVHDLVNALSDQISSALKRRAPGGGTVHIEDIQDQVELALMREGHHKVARAYVLYREH 132 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 ++ RAA++ ++ I L + DGT + RL ++ EACS L DV VL E Sbjct: 133 QAQKRAAEAPDQATPEI--VLNVTHADGTRSPLDHVRLNALIGEACSNLTDVDPNAVLQE 190 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T +N++DG+ E ++ TAL+ S+RTLIEK+PNY+ V AR LL+ +R E L + T Sbjct: 191 TLRNLFDGVPEKEVNTALVMSARTLIEKDPNYSFVAARLLLDGIRSEALRFTKQPVTVCT 250 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 E+ L+ +YF YI G++ LL ++ +D+ L + + RD F YLGLQ LYDR Sbjct: 251 QSELSGLFADYFQSYINTGIEHELLDPTLRQYDIKRLTDAIDTSRDLQFSYLGLQTLYDR 310 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH G R E+PQAFFMRVAMGLA+ E ++E A+EFY LLSSF FM STPTLFNSGT Sbjct: 311 YFLHEGGVRFELPQAFFMRVAMGLAINEIDRETHAIEFYKLLSSFDFMSSTPTLFNSGTL 370 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GIF A+++NA+L+K++GGLGNDW+ VR L +HI GTNGKSQGV Sbjct: 371 RPQLSSCYLTTVPDDLDGIFAAIKDNALLSKFAGGLGNDWSRVRALSSHIKGTNGKSQGV 430 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW Sbjct: 431 VPFLKVANDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTANW 490 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 +PDLFMKRV + WTLFSP + DLHDL G FE AY YE + DRGE+K FR+I A Sbjct: 491 VPDLFMKRVMEEGEWTLFSPADCPDLHDLTGLAFEKAYTAYEARVDRGEMKNFRRIKATN 550 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML+MLFETGHPWITFKDPCN+R QH GVVHSSNLCTEITL+++ +E AVCNLGS Sbjct: 551 LWRKMLSMLFETGHPWITFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDQEIAVCNLGS 610 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +NL H N D +KLA TI+TA+R+LDNVI+ N +++ +A+ SN HR +GLG+MGFQ Sbjct: 611 VNLAQHVTENGLDQEKLARTIKTAMRMLDNVIEYNYYSVPQARNSNLRHRPVGLGIMGFQ 670 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 ALH+ IPY+S +A+E AD SME +S++AISAS +LA ERG Y SF+GSLW +G+ PID Sbjct: 671 DALHIQKIPYSSEQAIEFADRSMETVSYYAISASSDLAAERGRYQSFEGSLWSRGILPID 730 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 SI LLAE R L MNR + L W+ ++ ++K GMRNSN MAIAPTATI+NICGV+QSI+ Sbjct: 731 SIDLLAEARGKYLVMNRDTTLDWEAVRAKIKVQGMRNSNTMAIAPTATISNICGVAQSIE 790 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P+++NL+VKSN+SG+FTV+N +LV +LK DLWDE M++DLKY DGS+ I+RIPD LK Sbjct: 791 PTFENLFVKSNLSGEFTVINPYLVRDLKALDLWDEVMVNDLKYFDGSVQQIDRIPDSLKA 850 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ATAFE++P WLIE+ SRRQKWIDQAQSLNLYL +PSG KLD +Y+ AWL+GLKTTYYL Sbjct: 851 LYATAFEVEPRWLIEAGSRRQKWIDQAQSLNLYLADPSGPKLDQMYKNAWLVGLKTTYYL 910 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC-TSDTECEVCQ 954 R+ S T VEK+T+ +DGKL V + +P +C D CE CQ Sbjct: 911 RASSKTRVEKTTMTKLDGKLRGVSAD-----PIAEALPKACAIDDPGCEACQ 957 >gi|88705572|ref|ZP_01103282.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter litoralis KT71] gi|88700085|gb|EAQ97194.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter litoralis KT71] Length = 969 Score = 1000 bits (2584), Expect = 0.0, Method: Composition-based stats. Identities = 553/945 (58%), Positives = 695/945 (73%), Gaps = 11/945 (1%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 + ++ P + ++VIKRNG V F+ SKIS AI KAF+AVEG A+ S R+ + + Sbjct: 33 ASAAEVSATAPGQ---LRVIKRNGTVVPFEASKISVAITKAFLAVEGGTAAASSRIHETV 89 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LTE + S +HIED+QDQVE SLM++G HKI R+YV+YRE+++ RAA+ Sbjct: 90 AKLTEMVTATFKRRMPSGGTIHIEDVQDQVELSLMRAGEHKIARDYVIYREQQASKRAAR 149 Query: 133 SH-SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191 S A ++ ++ DG+ + +RL +IV EAC+GL DVS +L E +N+YD Sbjct: 150 QSLSAETQEAADRINVVQLDGSKAPLDLERLHIIVSEACAGLDDVSETRILDEALRNLYD 209 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 G+S +L T+L+ ++RTLIE+EPNY +AR L + LR E L + AT +M L Sbjct: 210 GVSMQELSTSLVITARTLIEQEPNYTYASARLLCDNLRTEAL-SFLGVADSATQGDMDRL 268 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 Y + YI GV+ LL ++ ++DL + + ERD F YLGLQ LYDRYF+H + Sbjct: 269 YAKALPAYIARGVELELLDPTLAEYDLERMGKAILPERDLQFTYLGLQTLYDRYFIHSDE 328 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 R E+PQ FFMRVAMGLA++ET++E RA+EFY LLSSF +M STPTLFN+GT PQLSSC Sbjct: 329 VRFELPQIFFMRVAMGLAVEETDREARAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSC 388 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV Sbjct: 389 YLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVV 448 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTANWIPDLFMK Sbjct: 449 NDTAVAVNQGGKRKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMK 508 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV + WTLFSP++V DLHDLYGK FE Y YE A GE+K + + A LWRKML Sbjct: 509 RVFDDGDWTLFSPNDVPDLHDLYGKAFEERYCAYEAMAATGELKYSKTVKAQNLWRKMLG 568 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL H Sbjct: 569 MLFETGHPWMTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHV 628 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N + +KLA T+RTAVR+LDNVIDIN ++++ A+ SN HR +GLGLMGFQ AL+ H Sbjct: 629 DENGLNLEKLAETVRTAVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQH 688 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 I Y S +AV AD SME IS++AI AS +LA+ERGAY S++GSLW QG+ PIDS+G L E Sbjct: 689 IAYGSEDAVTFADRSMEAISYYAIDASSKLAEERGAYESYEGSLWSQGILPIDSLGKLVE 748 Query: 732 VRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++ + + W L++ VK GMRNSN MAIAPTATIANI GVSQSI+P+YQNL Sbjct: 749 ERGSDYIKVDDSMTMDWTSLREAVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNL 808 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 YVKSN+SG+FTVVN +LVN+LK R LWD M++DLKY+DGS+ IERIP DL+ I++ AF Sbjct: 809 YVKSNLSGEFTVVNPYLVNDLKVRGLWDSVMVNDLKYYDGSVQAIERIPADLRAIYSNAF 868 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 E++P W++E ASRRQKWIDQAQSLNLY++ SGKKLD YR AW GLKTTYYLRS +AT Sbjct: 869 EVEPRWIVECASRRQKWIDQAQSLNLYINNASGKKLDITYRMAWYSGLKTTYYLRSLAAT 928 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 EKST+ G+LNAV + D +CE CQ Sbjct: 929 GTEKSTID--TGQLNAVSSESAPAPAPVPMA--CSLDDPDCEACQ 969 >gi|330504345|ref|YP_004381214.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas mendocina NK-01] gi|328918631|gb|AEB59462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas mendocina NK-01] Length = 968 Score = 999 bits (2582), Expect = 0.0, Method: Composition-based stats. Identities = 552/966 (57%), Positives = 707/966 (73%), Gaps = 24/966 (2%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + V ++ LA P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QAVTPQAAESSQDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YRE Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYREA 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 ++ R A + S+ P P ++I G + + RL+ I+ EAC GL +V ++ E Sbjct: 128 QASKRKASAGSEIAQP-HPSIRITNAAGEVQPLDMGRLQTIIREACEGLAEVDGSLIERE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ +R E L+ + AT Sbjct: 187 TLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDNIRAEALSFLSIAAS-AT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+E+GV+ LL + FDL L + +ERD F YLGLQ LYDR Sbjct: 246 HHEMADLYAKALPAYVEKGVEFELLDAKLKTFDLEKLGAAINHERDQQFTYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 YF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 YFIHKDGIRFELPQVFFMRVAMGLAIEEPKNREDRAIEFYNLLSSFDYMASTPTLFNAGT 365 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+GA+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTAN Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTAN 485 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV ++ WTLFSP EV DLHDL GK FE YE YE + G+IK+++ I A Sbjct: 486 WIPDLFMKRVFEDGKWTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAK 545 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+NL+ H + + D +KL T++TAVR+LDNVIDIN +++++A+ SN HR +GLGLMGF Sbjct: 606 SVNLVNHIVDGKLDIEKLGRTVKTAVRMLDNVIDINYYSVDQARNSNLKHRPVGLGLMGF 665 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HI Y S A+E AD+SME IS++AI AS +LA ERG+YS+F+GSLW +G+ P+ Sbjct: 666 QDALYLQHIAYGSDAAIEFADKSMEAISYYAIQASCDLADERGSYSTFEGSLWSKGILPL 725 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS LL E R + ++ + L W +++RVK G+RNSN MAIAPTATI+NI GVSQS Sbjct: 726 DSQQLLIEARGQKYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIIGVSQS 784 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD M++DLKY+DGS+ IERIP DL Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDL 844 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 845 KDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPN-------------SSTHSLGIPSSCTSDT 948 YLR+ +ATS EKST+ GKLNAV + + + + Sbjct: 905 YLRALAATSTEKSTIN--TGKLNAVSAGGDEGFSAKAQAPAQQAAPAPAPVPKACAIDEP 962 Query: 949 ECEVCQ 954 +CE CQ Sbjct: 963 DCEACQ 968 >gi|229592128|ref|YP_002874247.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas fluorescens SBW25] gi|229363994|emb|CAY51541.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas fluorescens SBW25] Length = 964 Score = 998 bits (2581), Expect = 0.0, Method: Composition-based stats. Identities = 553/961 (57%), Positives = 700/961 (72%), Gaps = 18/961 (1%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + D+ L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 11 QGSVPQAADSNLDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDA-PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ ++ A P ++I + DGT + RL I+ EAC GL++V ++ Sbjct: 128 RAKERAVRTPAEEAAVQAHPSIRITLADGTFAPLDLGRLNTIITEACEGLEEVDGDLIQR 187 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ +D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 188 ETLKNLYDGVALTDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 246 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + YI +G++ LL+ + FDL L + +ERD F YLGLQ LYD Sbjct: 247 THHEMADLYAKALPAYIAKGIEFELLNPILATFDLEKLGKAINHERDQQFTYLGLQTLYD 306 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E KE RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 307 RYFIHKDGIRFELPQVFFMRVAMGLAIEEKHKEDRAIEFYNLLSSFDYMSSTPTLFNAGT 366 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 367 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 426 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 427 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 486 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK FE YE YE G+IK+F+ I A Sbjct: 487 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFEERYEYYEALSQYPGKIKLFKTIQA 546 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 547 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 606 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D KL T+ TAVR+LDNVIDIN +++ +A+ SN HR +GLG+MG Sbjct: 607 GSINLPNHIVNGKLDTAKLERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMG 666 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AVE AD+SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 667 FQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 726 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 727 LDSQQILIEQRGQKYIDVDLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 785 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DLKY+DGS+ IERIP + Sbjct: 786 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQE 845 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 846 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 905 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST-------HSLGIPSSCTSDTECEVC 953 YYLR+ +ATS EKST+ GKLNAV + + + + + +CE C Sbjct: 906 YYLRALAATSTEKSTIN--TGKLNAVSSGNHGDDSVLAAPAGPAPVPKACAIDEPDCEAC 963 Query: 954 Q 954 Q Sbjct: 964 Q 964 >gi|192361574|ref|YP_001982049.1| ribonucleotide-diphosphate reductase subunit alpha [Cellvibrio japonicus Ueda107] gi|190687739|gb|ACE85417.1| ribonucleoside reductase, large chain [Cellvibrio japonicus Ueda107] Length = 978 Score = 997 bits (2576), Expect = 0.0, Method: Composition-based stats. Identities = 564/976 (57%), Positives = 718/976 (73%), Gaps = 31/976 (3%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 + + D L+ P + ++VIKRNG V FD SKI+ A+ KAF+AVEG A+ Sbjct: 9 TSTSSHADLSNNNGLSATAPGQ---LRVIKRNGTVVPFDASKIAIAMTKAFLAVEGGTAA 65 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S RV++ + NLT+Q + S +HIE+IQDQVE LM++G K+ R+YVLYRE Sbjct: 66 ASTRVRETVDNLTKQITATFKRRMPSGGTIHIEEIQDQVELILMRAGEQKVARDYVLYRE 125 Query: 124 ERSDVRAAQSHSK--SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 E + +R AQ P P + + DGT + R+ IV EAC+GL V K + Sbjct: 126 EHARLRRAQKEVNKTEADPDYPAMSVTQADGTRAPLDIARMRTIVSEACAGLAGVEEKAI 185 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L E +N+YDG++E D+ T+L+ ++RTL+EKEPNY TAR LL+KLR E L + P Sbjct: 186 LDEAMRNLYDGVAEKDVNTSLVITARTLVEKEPNYTYATARLLLDKLRAEALGFLGVAPS 245 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 AT +M+ Y YI++GV+ L+ +++FDL L L +RD F YLGLQ L Sbjct: 246 -ATQSDMELYYARALPVYIQKGVELELISPELLNFDLDKLGKALIADRDLQFTYLGLQTL 304 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYF+H + +RIE+PQ FFMRVAMGLAL+E ++E+RA+EFY LLSSF +M STPTLFNS Sbjct: 305 YDRYFIHSDSTRIELPQIFFMRVAMGLALQEDKREERAIEFYRLLSSFDYMSSTPTLFNS 364 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGKS Sbjct: 365 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRGLGAYIKGTNGKS 424 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNT Sbjct: 425 QGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHMDVEEFLELRKNTGDDRRRTHDMNT 484 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANW+PDLFMKRV ++ WTLFSP++V DLHDLYGK FE YE+YE+ A +G++++F+ + Sbjct: 485 ANWVPDLFMKRVFEDQEWTLFSPNDVPDLHDLYGKAFEERYEHYEQLAAQGKVRLFKTVR 544 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVC 600 A+ LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+ + +E AVC Sbjct: 545 ALDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTKAGDEIAVC 604 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGS+NL H N + D KL T+ TA+R+LDNVIDIN + ++ +K+SN HR IGLG+ Sbjct: 605 NLGSVNLAQHIVNGKLDLAKLEKTVSTAIRMLDNVIDINYYAVDTSKQSNLRHRPIGLGI 664 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+ I Y+S AV+ AD SME +S++AI AS +LAQERG YS+F+GSLW +GV Sbjct: 665 MGFQDALYEQRIAYSSQAAVDFADTSMEAVSYYAIKASCQLAQERGKYSTFEGSLWSKGV 724 Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 PIDSI +LA+ R + ++R+ WD L+ VKT GMRNSN MAIAPTATI+NI GV Sbjct: 725 LPIDSIDILAQNRGENYIKVDRSKTFDWDSLRTEVKTKGMRNSNVMAIAPTATISNITGV 784 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 +QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD M++DLKY++GS+ I+RIP Sbjct: 785 TQSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVQKIDRIP 844 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 +D+K I+ATAFE++P W++ESASRRQKWIDQAQSLNLY+ +GKKLD YR AW GLK Sbjct: 845 EDMKAIYATAFEVEPKWIVESASRRQKWIDQAQSLNLYIAGANGKKLDITYRMAWYSGLK 904 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVT-------------------DPNSSTHSLG 939 TTYYLR+ +AT+ EKST+ G LNAV T + S + Sbjct: 905 TTYYLRALAATTTEKSTIN--TGALNAVSATGNSGLSAAPAAAKPVVADIEEASFAEAAP 962 Query: 940 IPSSCTSD-TECEVCQ 954 +P +C+ D +CE CQ Sbjct: 963 VPKACSIDNPDCEACQ 978 >gi|146282011|ref|YP_001172164.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas stutzeri A1501] gi|145570216|gb|ABP79322.1| ribonucleoside reductase, large chain [Pseudomonas stutzeri A1501] Length = 961 Score = 994 bits (2570), Expect = 0.0, Method: Composition-based stats. Identities = 554/968 (57%), Positives = 704/968 (72%), Gaps = 21/968 (2%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 M P LA P + ++VIKRNG V + KI+ AI KAF+AVEG Sbjct: 1 MQNQSTRENPLSADAPDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGG 57 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 A+ S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+ Sbjct: 58 NAAASSRIHDTVARLTEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVI 117 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 YRE ++ R + S S A P +++ DG+ + RL+ I+ EAC GL +V + Sbjct: 118 YREAQAVKRKSASGSSDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGAL 177 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L Sbjct: 178 IERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALG-FLGVA 236 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + ATHHEM LY + YIE+GV+ LL + +DL L L +ERD F YLGLQ Sbjct: 237 ESATHHEMADLYAKALPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQT 296 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYF+H + R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN Sbjct: 297 LYDRYFIHKDNVRFELPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFN 356 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSC+LTTVPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGK Sbjct: 357 AGTLRPQLSSCYLTTVPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGK 416 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 417 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 476 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP +V DLHDL G+ FE YE YE G+IK+F+ + Sbjct: 477 TANWIPDLFMKRVFDDGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTL 536 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC Sbjct: 537 PAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 596 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINL+ H + + D KL T+RTAVR+LDNVIDIN +++ +A+ +N HR +GLG+ Sbjct: 597 NLGSINLVNHIVDGKLDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGI 656 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+L HI Y S A++ AD+SME IS+ AI AS +LA ERGAYSSF+GSLW +G+ Sbjct: 657 MGFQDALYLQHIAYGSDAAIDFADKSMEAISYFAIQASCDLADERGAYSSFEGSLWSKGI 716 Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 P+DS +L E R + ++ + L W +++RVK G+RNSN MAIAPTATI+NI GV Sbjct: 717 LPLDSQQILIEARGQKYIDVDLSESLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGV 775 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SQSI+P+YQNLYVKSN+SG+FTV+N +LV++LK R LWD M++DLKY+DGS+ IERIP Sbjct: 776 SQSIEPTYQNLYVKSNLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIP 835 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DLK ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLK Sbjct: 836 QDLKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 895 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD-----------PNSSTHSLGIPSSCTSD 947 TTYYLR+ +ATS EKST+ GKLNAV + +P +C+ D Sbjct: 896 TTYYLRALAATSTEKSTIN--TGKLNAVSSGGSEAANSASAAPAAAEPKPAPVPLACSID 953 Query: 948 -TECEVCQ 954 +CE CQ Sbjct: 954 NPDCEACQ 961 >gi|327480259|gb|AEA83569.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas stutzeri DSM 4166] Length = 960 Score = 994 bits (2570), Expect = 0.0, Method: Composition-based stats. Identities = 552/967 (57%), Positives = 704/967 (72%), Gaps = 20/967 (2%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 M P LA P + ++VIKRNG V + KI+ AI KAF+AVEG Sbjct: 1 MQNQSTRENPLSADAPDLAATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGG 57 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 A+ S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+ Sbjct: 58 NAAASSRIHDTVARLTEQVTATFRRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVI 117 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 YRE ++ R + S S A P +++ DG+ + RL+ I+ EAC GL +V + Sbjct: 118 YREAQAVKRKSASGSSDIAQPHPSIRVTRADGSQQPLDMGRLQTIITEACEGLAEVDGAL 177 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY++VTAR L++ LR E L Sbjct: 178 IERETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSQVTARLLMDTLRAEALG-FLGVA 236 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + ATHHEM LY + YIE+GV+ LL + +DL L L +ERD F YLGLQ Sbjct: 237 ESATHHEMADLYAKALPAYIEKGVEFELLDSKLKSYDLAKLGAALNHERDQQFTYLGLQT 296 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYF+H + R E+PQ FFMRVAMGLA++E +KE RA+EFYNLLSSF +M STPTLFN Sbjct: 297 LYDRYFIHKDNVRFELPQIFFMRVAMGLAIEEEQKEARAIEFYNLLSSFDYMASTPTLFN 356 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSC+LTTVPDDL GI+ ++++NA+L+K++GGLGNDWTPVR LGA+I GTNGK Sbjct: 357 AGTLRPQLSSCYLTTVPDDLGGIYDSIRDNALLSKFAGGLGNDWTPVRALGAYIKGTNGK 416 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 417 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 476 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP +V DLHDL G+ FE YE YE G+IK+F+ + Sbjct: 477 TANWIPDLFMKRVFDDGPWTLFSPSDVPDLHDLTGRAFEERYEYYEELTKYGKIKLFKTL 536 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVC Sbjct: 537 PAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVC 596 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINL+ H + + D KL T+RTAVR+LDNVIDIN +++ +A+ +N HR +GLG+ Sbjct: 597 NLGSINLVNHIKDGKLDAAKLERTVRTAVRMLDNVIDINYYSVPQAQNANFKHRPVGLGI 656 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+L HI Y S A++ AD+SME IS++AI AS +LA ERGAYSSF+GSLW +G+ Sbjct: 657 MGFQDALYLQHIAYGSDAAIDFADKSMEAISYYAIQASCDLADERGAYSSFEGSLWSKGI 716 Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 P+DS +L E R + ++ + L W +++RVK G+RNSN MAIAPTATI+NI GV Sbjct: 717 LPLDSQQILIEARGQKYIDVDLSESLDWAPIRERVKK-GIRNSNIMAIAPTATISNIVGV 775 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SQSI+P+YQNLYVKSN+SG+FTV+N +LV++LK R LWD M++DLKY+DGS+ IERIP Sbjct: 776 SQSIEPTYQNLYVKSNLSGEFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIP 835 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DLK ++ATAFE++ W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLK Sbjct: 836 QDLKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLK 895 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP-----------SSCTSD 947 TTYYLR+ +ATS EKST+ GKLNAV ++ + P + + Sbjct: 896 TTYYLRALAATSTEKSTIN--TGKLNAVSSGGSEAANSASAAPAAEPKPAPVPLACSIDN 953 Query: 948 TECEVCQ 954 +CE CQ Sbjct: 954 PDCEACQ 960 >gi|34497742|ref|NP_901957.1| ribonucleotide-diphosphate reductase subunit alpha [Chromobacterium violaceum ATCC 12472] gi|34103598|gb|AAQ59959.1| ribonucleoside-diphosphate reductase system [Chromobacterium violaceum ATCC 12472] Length = 972 Score = 994 bits (2570), Expect = 0.0, Method: Composition-based stats. Identities = 549/954 (57%), Positives = 692/954 (72%), Gaps = 20/954 (2%) Query: 9 KGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68 +G A A + I+RNG V F+P KIS A+ KAF+AV G + S + Sbjct: 31 EGQTAAELGRAAAPQADFSLYKTIRRNGAVVPFEPVKISIAMTKAFLAVMGNQGATSASI 90 Query: 69 QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128 +D + LTEQ V L++ +HIEDIQDQVE SLM+ G H + R YVLYRE+RS Sbjct: 91 RDKVAQLTEQVVNALMRRKPEGGAIHIEDIQDQVELSLMRFGEHDVARAYVLYREQRSQE 150 Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188 RAA+ + + ++ ++ DG + + RL +E A L + +L+ET KN Sbjct: 151 RAARGEALTSV----QINVLRKDGRKLPLDVPRLRASIEAASKNLAGIDVDAILAETLKN 206 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +YDG+ E ++ + I ++R++IE++P Y VTAR L+ +R E+L + + EM Sbjct: 207 IYDGVPEEEVGKSAILAARSMIEQDPAYDYVTARLLMGNIRLEILG------EAVSQDEM 260 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Y YF YI++G+ A LL E + ++DL L L ERD F YLGLQ LYDRYFLH Sbjct: 261 GKQYAPYFADYIKKGIAAELLDEKLAEYDLKKLGAALDAERDLQFGYLGLQTLYDRYFLH 320 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 ++G+RIEMPQAF+MRVAMGLAL E +E RA+EFY +LSSF FM STPTLFNSGTR QL Sbjct: 321 VDGTRIEMPQAFYMRVAMGLALNEVNREDRAIEFYKVLSSFDFMSSTPTLFNSGTRRSQL 380 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSC+LTT+ DDL GI+ ++ENA+L+K++GGLGNDWTPVR +G+HI GTNGKSQGV+PFL Sbjct: 381 SSCYLTTIADDLDGIYEGIKENALLSKFAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFL 440 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV NDTAVAVNQGGKRKGAVCAYLETWH D+EEFL+LRKNTGDDRRRTHDMNTANWIPDL Sbjct: 441 KVVNDTAVAVNQGGKRKGAVCAYLETWHADIEEFLELRKNTGDDRRRTHDMNTANWIPDL 500 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV + W+LFSP E DLHDLYG+ FE AY YE + RGE+KV+++I A++LWRK Sbjct: 501 FMKRVMEGGDWSLFSPSETPDLHDLYGQAFEKAYTAYEARGARGELKVYKRIPALSLWRK 560 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL- 607 MLTMLFETGHPW+TFKDPCNIRSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL Sbjct: 561 MLTMLFETGHPWVTFKDPCNIRSPQQHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLS 620 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + D DKL TIRTA+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ L Sbjct: 621 AHLKEDGSLDADKLQRTIRTALRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCL 680 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 H+ +PY S AVE ADESME +++ A AS ELA+ERG Y S+ GSLWD+GV P DSI Sbjct: 681 HIKRVPYGSNAAVEFADESMEMVAYFAYLASTELAEERGRYPSYSGSLWDRGVLPHDSIN 740 Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 LLA R L ++RT R+ W++L++R+K GMRNSNC+AIAPTATIANI GVS SI+P+Y Sbjct: 741 LLAAERGGYLEVDRTERMDWNKLRERIKQHGMRNSNCLAIAPTATIANIIGVSASIEPTY 800 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 QNL+VKSN+SG+FTV N +LV +LK LWDE M++DLKY DGS+G I+R+P +LK I+A Sbjct: 801 QNLFVKSNLSGEFTVTNEYLVRDLKAAGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYA 860 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE+DP WL+E+ASRRQKWIDQAQSLNLY+ SGKKLD +Y+ AWL GLKTTYYLR+ Sbjct: 861 TAFEVDPKWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDELYKHAWLRGLKTTYYLRTL 920 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS------THSLGIPSSCTSDTECEVCQ 954 +ATS EKST +G G+LNAV + T + + +CE CQ Sbjct: 921 AATSAEKSTGRG--GELNAVSSQAQTAPAAAVDNTPATDAKFCSIDNPDCESCQ 972 >gi|254428366|ref|ZP_05042073.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Alcanivorax sp. DG881] gi|196194535|gb|EDX89494.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Alcanivorax sp. DG881] Length = 962 Score = 994 bits (2569), Expect = 0.0, Method: Composition-based stats. Identities = 565/959 (58%), Positives = 715/959 (74%), Gaps = 18/959 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P+ D N D+ SLA P + ++VIKRNG V S+D KI+ AI KAF+AVEG A Sbjct: 15 PASDSNDQDQ----SLASTAPGQ---LRVIKRNGKVVSYDDDKITVAISKAFLAVEGGTA 67 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YVLYR Sbjct: 68 AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127 Query: 123 EERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 E+++ RAA+ S AP + + M+DG+ + RLE ++ ACSGL+DV++ + Sbjct: 128 EQQASKRAAEHSSDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADKI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET KN+YDG+S D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L + Sbjct: 188 ITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEAL-QFLNVAE 246 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 +A+H EM LY E YI +G++ LL + ++DL L L RD F YLGLQ L Sbjct: 247 RASHDEMNALYGEALKAYIGKGIELELLSPQLAEYDLDKLGAALDGNRDLQFSYLGLQTL 306 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYF+H N +RIE+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+ Sbjct: 307 YDRYFIHHNDTRIELPQCFFMRVAMGLAVEEDNREARAIEFYNLLSSFDYMSSTPTLFNA 366 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+S Sbjct: 367 GTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGRS 426 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN+ Sbjct: 427 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNS 486 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV WTLFSP++ DLHDLYG+ FE AY YE + GE+K+F+++ Sbjct: 487 ANWIPDLFMKRVINEEDWTLFSPNDAPDLHDLYGEAFEKAYLEYEAKTRSGELKLFKRLP 546 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVCN Sbjct: 547 AINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVCN 606 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NL H N D +KL TI TAVR+LDNVIDIN +++ +A++SN HR +GLG+M Sbjct: 607 LGSVNLAQHVDENGLDIEKLQGTINTAVRMLDNVIDINYYSVPQAERSNMKHRPVGLGIM 666 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ I YAS +AV AD SME +S++AI AS +LA+ERGAY +F GSLW QGV Sbjct: 667 GFQDALYKQGISYASSDAVTFADNSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGVL 726 Query: 722 PIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDSI +L R ++R+ L WD ++ K GMRNSN MAIAPTATIANI GVS Sbjct: 727 PIDSIEILVNQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGVS 785 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 QSI+P+YQNLYVKSN+SG+FTVVN +LV+ LK+R LWD M++DLKY+DGS IERIP Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVSALKERGLWDNVMVNDLKYYDGSAQPIERIPA 845 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK+ TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD Y+ AWL+GLKT Sbjct: 846 DLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLKT 905 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCT-SDTECEVCQ 954 TYYLR+ AT EKST+ DGKLN V + + +P +C+ D +CE CQ Sbjct: 906 TYYLRAIGATQTEKSTIN--DGKLNRVSSKVEEPAAEFGQAADVPQACSLDDPDCEACQ 962 >gi|88812073|ref|ZP_01127325.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus mobilis Nb-231] gi|88790577|gb|EAR21692.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus mobilis Nb-231] Length = 955 Score = 994 bits (2569), Expect = 0.0, Method: Composition-based stats. Identities = 559/954 (58%), Positives = 710/954 (74%), Gaps = 14/954 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P + + P+ ++ PE + + VI+R+G V+ FDP KI+ A+ KA++AVEG Sbjct: 14 PEVTMPAQSAVSLPAESFEHPESRARDLHVIRRDGQVSGFDPGKITVAMTKAYLAVEGAN 73 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 AS S R+++ ++ L Q V L + + VHIEDIQDQVE +LM++G H++ R YVLY Sbjct: 74 ASGSQRIRETVERLVGQVVEALTRRQPAGGRVHIEDIQDQVELALMRAGEHRVARAYVLY 133 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 REER+ R Q+ A A +L++ DG + + RL IVEE+C + V + + Sbjct: 134 REERARARQDQAEPV--AAQAERLRVTRADGGQVPLDEARLRRIVEESCQRIAGVEPEAI 191 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET++N+YDG+ E++L TAL+ +RTLIE+EP Y+ V A LL+ LRRE L+ + Sbjct: 192 VAETHRNLYDGIPEAELGTALVMCARTLIEREPGYSYVAAGLLLDTLRREALSFLGGVEA 251 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 AT EM YP+YF Y+ GV+ LL +++FDL LA L+ RD F YLGLQ L Sbjct: 252 GATFEEMAKRYPDYFIAYVRRGVELELLDPRLLEFDLERLARVLEPARDRQFGYLGLQTL 311 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLH +G+ E+PQAFFMRVAMGLAL E ++E+RA EFY LL+SF FM STPTLFN+ Sbjct: 312 YDRYFLHYDGTHFELPQAFFMRVAMGLALNEIDREERAAEFYRLLASFDFMSSTPTLFNA 371 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GTR PQLSSC+L+T+PDDL GI+ A+++NA+L+K++GGLGNDWTPVR LGAHI GTNG+S Sbjct: 372 GTRRPQLSSCYLSTIPDDLDGIYSAIRDNALLSKFAGGLGNDWTPVRALGAHIKGTNGRS 431 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKVANDTAVAVNQGG+R+GAVCAYLE WH+D+EEFL+LRKNTGD+RRRTHDMNT Sbjct: 432 QGVVPFLKVANDTAVAVNQGGRRRGAVCAYLEIWHLDIEEFLELRKNTGDERRRTHDMNT 491 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANW+PDLFM+RV A WTLFSPDE DLHDLYG FE Y YE QA+RGE++ ++++S Sbjct: 492 ANWVPDLFMRRVIDEADWTLFSPDETPDLHDLYGAAFEAHYREYEAQAERGELRNYKRVS 551 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 AVALWR+ML+MLFETGHPWITFKD CN RSPQQH GVVHSSNLCTEITLN+S +E AVCN Sbjct: 552 AVALWRRMLSMLFETGHPWITFKDACNARSPQQHTGVVHSSNLCTEITLNTSDDEIAVCN 611 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NL AH D +L T+RTA+R+LDNVIDIN +++ +A+++N HR +GLG+M Sbjct: 612 LGSVNLAAHVGAEGIDAARLERTVRTAMRMLDNVIDINWYSVPQARRANMRHRPVGLGVM 671 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ L +PYAS EAV+ AD SME IS++AI AS ELAQERGAY+SF GSLW +G+ Sbjct: 672 GFQDALYRLGLPYASREAVDFADRSMETISYYAIQASSELAQERGAYASFAGSLWSRGIL 731 Query: 722 PIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PIDSI LLAE R L M+ ++ L WD L++R++ GMRNSNC+AIAPTATIANI GVS Sbjct: 732 PIDSIRLLAEQRGEPLTMDTSTTLDWDALRERIRRTGMRNSNCLAIAPTATIANIVGVSP 791 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+Y+NLYVKSN+SG+FTVVN LV LK R LWD +++DLKY DGS+ IER+P+ Sbjct: 792 SIEPTYRNLYVKSNLSGEFTVVNPHLVEALKARGLWDAVLVNDLKYFDGSVQAIERVPEP 851 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 +K ++ TAFEIDP WL+E+ASRRQKW+DQ+QSLNLY+ E SG KLD +YR AW GLKTT Sbjct: 852 IKALYTTAFEIDPNWLVEAASRRQKWLDQSQSLNLYMAEASGPKLDALYRNAWRRGLKTT 911 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 YYLRS AT VEKST+ DG LN V + D ECE CQ Sbjct: 912 YYLRSLGATHVEKSTV--ADGALNRVAAAPAAPACAV--------DDPECEACQ 955 >gi|254784924|ref|YP_003072352.1| ribonucleotide-diphosphate reductase subunit alpha [Teredinibacter turnerae T7901] gi|237686086|gb|ACR13350.1| ribonucleoside-diphosphate reductase alpha subunit, class I [Teredinibacter turnerae T7901] Length = 961 Score = 993 bits (2568), Expect = 0.0, Method: Composition-based stats. Identities = 563/958 (58%), Positives = 716/958 (74%), Gaps = 12/958 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P+ V + + + S+A P + ++VIKRNG + + KI+ A+ KAF+AVEG A Sbjct: 10 PTSPVPQANPHSNSSIANAAPGQ---LRVIKRNGTLVPYTDDKIAVAMTKAFLAVEGGTA 66 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + + NLT+Q + S +HIE+IQDQVE +LM++G HK+ R+YVLYR Sbjct: 67 AASSRIHETVANLTQQISATFKRRMPSGGTIHIEEIQDQVELTLMRTGEHKVARDYVLYR 126 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 ER+ +RA + P++ ++ DG+L + RL +V EAC+GL+DV + +L Sbjct: 127 AERAKLRAEKEKLSQANVDFPEINVLQPDGSLQPLDVMRLHTVVSEACAGLKDVDGEAIL 186 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 E +N+Y+G+S DL T+L+ S+RTL+EKEPNY TAR L++KLR E L + Sbjct: 187 KEAMRNLYEGVSAEDLNTSLVISARTLVEKEPNYTYATARLLMDKLRAEAL-AFLDVATQ 245 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 AT EM+ YP YI G++ LL ++ DFDL L L ERD F YLGLQ LY Sbjct: 246 ATSAEMEMFYPNALPAYISRGIELELLDPALADFDLQLLGAALIPERDQQFTYLGLQTLY 305 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 DRYFLH +G+R E+PQ FFMRVAMGLA++E +K RA+EFY LLSSF +M STPTLFN+G Sbjct: 306 DRYFLHSDGTRFELPQIFFMRVAMGLAMREDDKNGRAIEFYRLLSSFDYMSSTPTLFNAG 365 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T PQLSSC+LT+VPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGKSQ Sbjct: 366 TLRPQLSSCYLTSVPDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGKSQ 425 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+PFLKVANDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTA Sbjct: 426 GVVPFLKVANDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTA 485 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 NW+PDLFMKRV ++ WTLF+P V DLHDL+G FE YE+YER+A G IK F+K+ A Sbjct: 486 NWVPDLFMKRVFEDKEWTLFTPSTVPDLHDLFGLAFEERYEHYEREAAAGNIKPFKKVRA 545 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-VCN 601 V LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ + E VCN Sbjct: 546 VDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTKANEEIAVCN 605 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGSINL H + + D +KL ++ TAVR+LDNVIDIN ++++ A+ SN HR +GLG+M Sbjct: 606 LGSINLAQHVVDGKLDQEKLQRSVDTAVRMLDNVIDINYYSVDTARNSNLRHRPVGLGIM 665 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ + IPY+S AVE AD SME +S++AISAS LA ERG+YS+F+GSLW QGV Sbjct: 666 GFQDALYKMRIPYSSAAAVEFADRSMEAVSYYAISASSALASERGSYSTFEGSLWSQGVL 725 Query: 722 PIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PIDSI LLA+ R E + ++T+ L WD L+ VKT GMRNSN MAIAPTATIANI GVS Sbjct: 726 PIDSIQLLAKNRGEQFIEQDQTTTLDWDTLRNTVKTQGMRNSNVMAIAPTATIANITGVS 785 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 QSI+P+YQNLYVKSN+SG+FTVVN +LV++LK R LWD M++DLKY++GS+ I+RIPD Sbjct: 786 QSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKDRGLWDSVMVNDLKYYEGSVFKIDRIPD 845 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK ++ATAFE++P W++++ASRRQKWIDQAQSLNLY+ +GKKLD YR AW GLKT Sbjct: 846 DLKLLYATAFEVEPRWIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYRMAWYRGLKT 905 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS--STHSLGIPSSCT-SDTECEVCQ 954 TYYLR+ +AT+ EKST+ G LNAV P + S +P +C+ D +CE CQ Sbjct: 906 TYYLRALAATTTEKSTID--TGSLNAVSSGAPAANISAGPADVPKACSLDDPDCEACQ 961 >gi|90022103|ref|YP_527930.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharophagus degradans 2-40] gi|89951703|gb|ABD81718.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Saccharophagus degradans 2-40] Length = 969 Score = 993 bits (2568), Expect = 0.0, Method: Composition-based stats. Identities = 556/965 (57%), Positives = 712/965 (73%), Gaps = 18/965 (1%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P + + ++ P + ++VIKRNG V + KIS A+ KAF+AVEG Sbjct: 11 KPQGSPIADNASSSSTINATAPGQ---LRVIKRNGTVVPYTDDKISVAMTKAFLAVEGGT 67 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 A+ S R+ + ++ LT Q + S +HIE+IQDQVE +LM++G HK+ R+YV+Y Sbjct: 68 AAASRRIHETVEGLTAQISATFKRRMPSGGTIHIEEIQDQVELTLMRAGEHKVARDYVIY 127 Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 R +R++ R A + + P++ ++ +G + R++ +V EAC+GL+DV + Sbjct: 128 RAKRAEQRTPAVNVEDVNFSDFPEINVVDHNGDRHPLDIDRIKTVVAEACAGLKDVDADA 187 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L E +++YDG+S +DL TAL+ S+RTL+EKEPNY T+R L++KLR E L + Sbjct: 188 ILKEAMRSLYDGVSLTDLNTALVISARTLVEKEPNYTYATSRLLMDKLRAEAL-SFLGIA 246 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++AT EM+ LY + YIE+G++ L+ + +DL L N L ERD F YLGLQ Sbjct: 247 EEATQAEMETLYAKTLPAYIEKGIELDLISPDLASYDLNMLGNALIAERDLQFTYLGLQT 306 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH N RIE+PQ FFMRVAMGLA E K +RAVEFY LLSSF +M STPTLFN Sbjct: 307 LYDRYFLHSNDVRIELPQIFFMRVAMGLAANEENKNERAVEFYRLLSSFDYMSSTPTLFN 366 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLGA+I GTNGK Sbjct: 367 AGTLRPQLSSCYLTTVPDDLHGIYGAMQDNAMLSKWAGGLGNDWTPVRGLGAYIKGTNGK 426 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 427 SQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 486 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANW+PDLFMKRV + WTLFSP++V DLHDL+G+ FE YE YERQA G+I+V +K+ Sbjct: 487 TANWVPDLFMKRVFEEKEWTLFSPNDVPDLHDLFGRAFEDRYEEYERQAAAGKIRVHKKV 546 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-V 599 A+ LWRKML MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+ + E V Sbjct: 547 RALDLWRKMLGMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTKANEEIAV 606 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSINL H + + D +KLA T++TAVR+LDNVIDIN + +E A+ SN HR +GLG Sbjct: 607 CNLGSINLAQHIVDGKLDEEKLAQTVKTAVRMLDNVIDINYYAVESARTSNMRHRPVGLG 666 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 LMGFQ AL+ ++I Y+S +AV AD SME IS+HAI AS ELA+ERG+YS+F GSLW +G Sbjct: 667 LMGFQDALYKMNISYSSDDAVTFADRSMEAISYHAIKASSELAKERGSYSTFDGSLWSKG 726 Query: 720 VFPIDSIGLLAEVRDE--LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + P+DS+ LL E R E + ++++S WD L++ VKT GMRNSN MAIAPTATIANI G Sbjct: 727 ILPLDSLDLLIENRGEKFIKVDKSSTHDWDTLRETVKTQGMRNSNVMAIAPTATIANITG 786 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 VSQSI+P+YQNLYVKSN+SG+FTVVN +LV++LK+R LWD M++DLKY++GS+ I+RI Sbjct: 787 VSQSIEPTYQNLYVKSNLSGEFTVVNPYLVHDLKERGLWDSVMVNDLKYYEGSLQKIDRI 846 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P+DLK +++TAFE++P W++E+ASRRQKWIDQAQSLNLY+ +GKKLD YR AW GL Sbjct: 847 PEDLKALYSTAFEVEPRWIVEAASRRQKWIDQAQSLNLYIAGANGKKLDITYRMAWYSGL 906 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAV--------PVTDPNSSTHSLGIPSSCTSDTE 949 KTTYYLR+ SAT+ EKST+ G LNAV + + D + Sbjct: 907 KTTYYLRALSATTTEKSTV--TSGTLNAVSSGGGASQSAAAAAEPAPAAVPLACSLDDPD 964 Query: 950 CEVCQ 954 CE CQ Sbjct: 965 CEACQ 969 >gi|28868877|ref|NP_791496.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato str. DC3000] gi|28852116|gb|AAO55191.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|331016766|gb|EGH96822.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 970 Score = 993 bits (2567), Expect = 0.0, Method: Composition-based stats. Identities = 553/969 (57%), Positives = 695/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S A L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQAQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAGRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G++K+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL TI AVR+LDNVIDIN +++ +A+ SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|298487944|ref|ZP_07005983.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157495|gb|EFH98576.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330986741|gb|EGH84844.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 970 Score = 993 bits (2567), Expect = 0.0, Method: Composition-based stats. Identities = 552/969 (56%), Positives = 694/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|330949819|gb|EGH50079.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae Cit 7] Length = 970 Score = 993 bits (2566), Expect = 0.0, Method: Composition-based stats. Identities = 551/968 (56%), Positives = 694/968 (71%), Gaps = 23/968 (2%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 ++ G A + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 8 ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++ + P ++I DG+ + RL IV EAC GL +V + ++ +E Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L AT Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543 IPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL H N + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MGF Sbjct: 606 SINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+ Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQS Sbjct: 726 DSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +L Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTS 946 YLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962 Query: 947 DTECEVCQ 954 + +CE CQ Sbjct: 963 EPDCEACQ 970 >gi|221213240|ref|ZP_03586215.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD1] gi|221166692|gb|EED99163.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD1] Length = 995 Score = 993 bits (2566), Expect = 0.0, Method: Composition-based stats. Identities = 551/994 (55%), Positives = 691/994 (69%), Gaps = 56/994 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G P + +VI+RNG V +F+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGAEQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + + + ++ D+G + L ++ AC GL V+ Sbjct: 131 REKRHLERQHAGEETAAVRETTGGINVV-DNGVTRPLDMNALRALIVSACEGLGAAVNPD 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ +M Y EYF ++++ GV+A LL + ++ FDL L L RD F YLGLQ Sbjct: 245 -EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD +G +FE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSS 961 Query: 930 ---DPNSSTHSLGIPSSCTSDT------ECEVCQ 954 D + CT ECE CQ Sbjct: 962 GALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 995 >gi|167586059|ref|ZP_02378447.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia ubonensis Bu] Length = 990 Score = 993 bits (2566), Expect = 0.0, Method: Composition-based stats. Identities = 549/989 (55%), Positives = 688/989 (69%), Gaps = 51/989 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 RE+R R A + ++ D+G + L ++ AC GL V+ Sbjct: 131 REKRHLERQHAGEEAPAVESAGGINVV-DNGVTRPLDLNALRALIVSACDGLGAAVNPDP 189 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ EM Y EYF ++++ GV A LL + ++ FDL L + L RD F YLGLQ Sbjct: 244 EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGDALDANRDLQFGYLGLQT 303 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH++GSRIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN Sbjct: 304 LYDRYFLHVDGSRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 363 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK Sbjct: 364 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 483 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI Sbjct: 484 TANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKI 543 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVC Sbjct: 544 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 603 Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 NLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVPKARNSNLKHRP 663 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GSL Sbjct: 664 VGMGIMGFQDCLHLLRTPYASQAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 723 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ LL E R + ++ + L W EL+ R+ GMRNSNC+AIAPTATI+N Sbjct: 724 WDRGILPQDTLKLLTEARGGYVEVDTSESLDWSELRSRIAAHGMRNSNCVAIAPTATISN 783 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + I Sbjct: 784 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL Sbjct: 844 DRVPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 903 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP-----------------------VTDP 931 GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGAGGAQGAAGGFGATGGDASAAGT 961 Query: 932 NSSTHSLGIPSSCTSDT------ECEVCQ 954 ++ C ECE CQ Sbjct: 962 VNAAPVEAEGPVCMMRPGDPGFDECEACQ 990 >gi|330880141|gb|EGH14290.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966560|gb|EGH66820.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. actinidiae str. M302091] Length = 970 Score = 993 bits (2566), Expect = 0.0, Method: Composition-based stats. Identities = 554/969 (57%), Positives = 695/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S A L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQAQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G++K+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL TI AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|289628679|ref|ZP_06461633.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866024|gb|EGH00733.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 970 Score = 992 bits (2565), Expect = 0.0, Method: Composition-based stats. Identities = 550/969 (56%), Positives = 693/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G++K+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|320323422|gb|EFW79510.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. glycinea str. B076] gi|320327619|gb|EFW83631.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] gi|330876274|gb|EGH10423.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. glycinea str. race 4] Length = 970 Score = 992 bits (2565), Expect = 0.0, Method: Composition-based stats. Identities = 551/969 (56%), Positives = 694/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G++K+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|213969510|ref|ZP_03397646.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. tomato T1] gi|301385966|ref|ZP_07234384.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato Max13] gi|302058709|ref|ZP_07250250.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato K40] gi|302134400|ref|ZP_07260390.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925606|gb|EEB59165.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. tomato T1] Length = 970 Score = 992 bits (2564), Expect = 0.0, Method: Composition-based stats. Identities = 553/969 (57%), Positives = 695/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S A L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQAQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAGRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGRAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G++K+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL TI AVR+LDNVIDIN +++ +A+ SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW QG+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|257485934|ref|ZP_05639975.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010342|gb|EGH90398.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 970 Score = 992 bits (2564), Expect = 0.0, Method: Composition-based stats. Identities = 551/969 (56%), Positives = 694/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRTPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H + + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|189349323|ref|YP_001944951.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia multivorans ATCC 17616] gi|189333345|dbj|BAG42415.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia multivorans ATCC 17616] Length = 997 Score = 992 bits (2564), Expect = 0.0, Method: Composition-based stats. Identities = 551/994 (55%), Positives = 691/994 (69%), Gaps = 56/994 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G P + +VI+RNG V +F+PSKI+ A+ KAF+AV G Sbjct: 19 RPLGGAEQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 72 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 73 GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 132 Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + + + ++ D+G + L ++ AC GL V+ Sbjct: 133 REKRHLERQHAGEETAAVRETTGGINVV-DNGVTRPLDMNALRALIVSACDGLGAAVNPD 191 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 192 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 246 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ +M Y EYF ++++ GV+A LL + ++ FDL L L RD F YLGLQ Sbjct: 247 -EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQ 305 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 306 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLF 365 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 366 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 425 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 426 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 485 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD +G +FE AY YE + RGEIK+F+K Sbjct: 486 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKK 545 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 546 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 605 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR Sbjct: 606 CNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 665 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 666 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 725 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI+ Sbjct: 726 LWDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATIS 785 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 786 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 845 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 846 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 905 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 906 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSS 963 Query: 930 ---DPNSSTHSLGIPSSCTSDT------ECEVCQ 954 D + CT ECE CQ Sbjct: 964 GALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 997 >gi|161525958|ref|YP_001580970.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia multivorans ATCC 17616] gi|221202416|ref|ZP_03575448.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2M] gi|221208124|ref|ZP_03581129.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2] gi|160343387|gb|ABX16473.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans ATCC 17616] gi|221172027|gb|EEE04469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2] gi|221177693|gb|EEE10108.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia multivorans CGD2M] Length = 995 Score = 992 bits (2564), Expect = 0.0, Method: Composition-based stats. Identities = 551/994 (55%), Positives = 691/994 (69%), Gaps = 56/994 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G P + +VI+RNG V +F+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGAEQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVDQLTRNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + + + ++ D+G + L ++ AC GL V+ Sbjct: 131 REKRHLERQHAGEETAAVRETTGGINVV-DNGVTRPLDMNALRALIVSACDGLGAAVNPD 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ +M Y EYF ++++ GV+A LL + ++ FDL L L RD F YLGLQ Sbjct: 245 -EEVVQADMSTRYAEYFPQFLKRGVEAGLLDDKLLQFDLKRLGEALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD +G +FE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGADFEAAYTAYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLVKQPDGTYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLAEARGGYVEVDSSESLDWATLRARIATHGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT------------------------ 929 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGGAAGGAQGAAGGFGAAGGDVSS 961 Query: 930 ---DPNSSTHSLGIPSSCTSDT------ECEVCQ 954 D + CT ECE CQ Sbjct: 962 GALDAAALAPVEAEGPVCTMRPGDPGFDECEACQ 995 >gi|110833572|ref|YP_692431.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax borkumensis SK2] gi|110646683|emb|CAL16159.1| ribonucleoside reductase [Alcanivorax borkumensis SK2] Length = 962 Score = 992 bits (2563), Expect = 0.0, Method: Composition-based stats. Identities = 555/957 (57%), Positives = 707/957 (73%), Gaps = 14/957 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P+ D N D+ A P + ++VIKRNG V +D KI+ AI KAF+AVEG A Sbjct: 15 PASDSNDQDQSI----ASTAPGQ---LRVIKRNGKVVGYDDDKITVAISKAFLAVEGGTA 67 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S R+ + + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YVLYR Sbjct: 68 AASSRIHETVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRNGEQKVARDYVLYR 127 Query: 123 EERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 E+R+ RAA+ S + + + M+DG+ + RLE ++ ACSGL+DV++ Sbjct: 128 EQRASKRAAEQKSTDLPAPTHQVDMSVTMEDGSKAPLDMARLEHLIRAACSGLEDVNADK 187 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET KN+YDG+S D+ T+++ ++RT+IE EPNY++VTAR L++K+R E L + Sbjct: 188 IITETVKNLYDGVSIHDVNTSMVITARTMIEVEPNYSQVTARLLMDKIRAEAL-QFLRVA 246 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++A+H EM LY + YI +G++ LL + ++DL L L RD F YLGLQ Sbjct: 247 ERASHDEMNALYSDALKAYISKGIELELLSPQLAEYDLDALGAALDGNRDLQFSYLGLQT 306 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYF+H N +RIE+PQ FFMRVAMGLA +E +E RA+EFYNLLSSF +M STPTLFN Sbjct: 307 LYDRYFIHHNDTRIELPQCFFMRVAMGLAAEEDNREARAIEFYNLLSSFDYMSSTPTLFN 366 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNG+ Sbjct: 367 AGTLRPQLSSCYLTTVPDDLHGIYGAIQDNAMLSKFAGGLGNDWTPVRALGAYIKGTNGR 426 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 427 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 486 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 +ANWIPDLFMKRV WTLFSP++ DLHDLYG+ FE AY YE + GE+K+F+++ Sbjct: 487 SANWIPDLFMKRVINEEDWTLFSPNDTPDLHDLYGEAFEKAYTEYEAKTRSGELKLFKRL 546 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A+ LWRKML+MLFETGHPW TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ EE AVC Sbjct: 547 PAINLWRKMLSMLFETGHPWFTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNQEEIAVC 606 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGS+NL H N + +KL STI TAVR+LDNVIDIN +++ +AK+SN HR +GLG+ Sbjct: 607 NLGSVNLAQHVDENGLNIEKLQSTINTAVRMLDNVIDINYYSVPQAKRSNMKHRPVGLGI 666 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+ I YAS +AV AD SME +S++AI AS +LA+ERGAY +F GSLW QG+ Sbjct: 667 MGFQDALYKQGISYASSDAVTFADTSMEAVSYYAIQASAKLAEERGAYQTFDGSLWSQGI 726 Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 PIDSI +L + R ++R+ L WD ++ K GMRNSN MAIAPTATIANI GV Sbjct: 727 LPIDSIDILVKQRGEDYCKVDRSQTLDWDSVRAMAKK-GMRNSNVMAIAPTATIANITGV 785 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SQSI+P+YQNLYVKSN+SG+FTVVN +LV LK+R LWD M++DLKY+DGS IERIP Sbjct: 786 SQSIEPTYQNLYVKSNLSGEFTVVNPYLVKALKERGLWDNVMVNDLKYYDGSAQPIERIP 845 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DLK+ TAFE++P WL+E+ASRRQKWIDQAQSLNLY+ E +GKKLD Y+ AWL+GLK Sbjct: 846 ADLKEQFRTAFEVEPRWLVEAASRRQKWIDQAQSLNLYIAEANGKKLDVTYKMAWLLGLK 905 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 TTYYLR+ AT EKST+ + P + +P +C+ D +CE CQ Sbjct: 906 TTYYLRAIGATQTEKSTISDGKLNQVSSGPETPAEFNQAADVPKACSIDEPDCEACQ 962 >gi|289648391|ref|ZP_06479734.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aesculi str. 2250] Length = 970 Score = 992 bits (2563), Expect = 0.0, Method: Composition-based stats. Identities = 550/969 (56%), Positives = 693/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G++K+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTIN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|330960619|gb|EGH60879.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. maculicola str. ES4326] Length = 970 Score = 991 bits (2562), Expect = 0.0, Method: Composition-based stats. Identities = 550/968 (56%), Positives = 697/968 (72%), Gaps = 23/968 (2%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 ++ G A + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 8 ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++ ++ P ++I DG+ + RL IV EAC GL +V + ++ +E Sbjct: 128 RAKERAGRA-TEEQVQAHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQTE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + AT Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVAESAT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ G+K LL+ + DFDL L + +ERD F YLGLQ LYDR Sbjct: 246 HHEMADLYAKALPAYVATGIKFELLNPVLADFDLEKLGKAINHERDQQFTYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543 IPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL H + + D DKL T+ AVR+LDNVIDIN +++ +A+ SN HR +GLG+MGF Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+ Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS +L E R ++++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQS Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +L Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTS 946 YLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962 Query: 947 DTECEVCQ 954 + +CE CQ Sbjct: 963 EPDCEACQ 970 >gi|302184854|ref|ZP_07261527.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. syringae 642] Length = 970 Score = 991 bits (2561), Expect = 0.0, Method: Composition-based stats. Identities = 550/968 (56%), Positives = 695/968 (71%), Gaps = 23/968 (2%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 ++ G A + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 8 ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++ + P ++I DG+ + RL IV EAC GL +V + ++ +E Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L AT Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 246 HHEMAELYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543 IPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL H + + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MGF Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+ Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DS +L E R ++++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQS Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP +L Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTY Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTTY 904 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTS 946 YLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 905 YLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAID 962 Query: 947 DTECEVCQ 954 + +CE CQ Sbjct: 963 EPDCEACQ 970 >gi|66046946|ref|YP_236787.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. syringae B728a] gi|63257653|gb|AAY38749.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv. syringae B728a] Length = 970 Score = 990 bits (2560), Expect = 0.0, Method: Composition-based stats. Identities = 551/977 (56%), Positives = 698/977 (71%), Gaps = 33/977 (3%) Query: 3 PSKDVNKGDEDAFPS-------LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFM 55 + + P L+ P + ++VIKRNG V + KI+ AI KAF+ Sbjct: 2 QTDTTRENSPTGAPQPSQTQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFL 58 Query: 56 AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKIT 115 AVEG A+ S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ Sbjct: 59 AVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVA 118 Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD 175 R+YV+YR+ R+ RA ++ + P ++I DG+ + RL IV EAC GL + Sbjct: 119 RDYVIYRDSRAKERAVRTPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAE 177 Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 V + ++ +ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L Sbjct: 178 VDADLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG- 236 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295 ATHHEM LY + Y+ G+K LL+ + +FDL L + +ERD F Y Sbjct: 237 FLGVADSATHHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTY 296 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 LGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M ST Sbjct: 297 LGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSST 356 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTLFN+GT PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I Sbjct: 357 PTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIK 416 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRR Sbjct: 417 GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRR 476 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEI 534 THDMNTANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE+YE G+I Sbjct: 477 THDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEHYEALTEYPGKI 536 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K+F+ I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ Sbjct: 537 KLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNK 596 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 +E AVCNLGSINL H + + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR Sbjct: 597 DEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHR 656 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GS Sbjct: 657 PVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGS 716 Query: 715 LWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 LW +G+ P+DS +L E R ++++ L W ++ RV+ G+RNSN MAIAPTATI Sbjct: 717 LWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATI 775 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 ANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ Sbjct: 776 ANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQ 835 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR A Sbjct: 836 QIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMA 895 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------- 942 W GLKTTYYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 896 WYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPA 953 Query: 943 -----SCTSDTECEVCQ 954 + +CE CQ Sbjct: 954 PVPKACAIDEPDCEACQ 970 >gi|186477387|ref|YP_001858857.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia phymatum STM815] gi|184193846|gb|ACC71811.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia phymatum STM815] Length = 997 Score = 990 bits (2559), Expect = 0.0, Method: Composition-based stats. Identities = 558/999 (55%), Positives = 702/999 (70%), Gaps = 65/999 (6%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P + + +G + P Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 18 RPVEGLAQGADALAPQTGY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 71 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM++G H + R YVLY Sbjct: 72 GAASARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRTGEHNVARAYVLY 131 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 RE+R+ R + DAP+A L + D+G + L ++E AC+ L D V+++ Sbjct: 132 REKRTQER----GHEVDAPVASGLNVT-DNGVTRPLDMAALRGLIESACANLGDAVNAEP 186 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VT+R LL +RRE+L Sbjct: 187 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREIL------E 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ T EM Y EYF +I+ GV A LL + ++ FDL L L RD F YLGLQ Sbjct: 241 EEVTQAEMAGRYAEYFPLFIKRGVNAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQT 300 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLHI+G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN Sbjct: 301 LYDRYFLHIDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFN 360 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK Sbjct: 361 SGTRRSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 420 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 421 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 480 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI Sbjct: 481 TANWIPDLFMKRVLEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 540 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVC Sbjct: 541 PAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 600 Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR Sbjct: 601 NLGSVNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRP 660 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+MGFQ LH+L PYAS EAVE AD SME + ++A AS ELA+ERG YS+++GSL Sbjct: 661 VGMGIMGFQDCLHVLRTPYASQEAVEFADRSMEAVCYYAYWASTELAEERGRYSTYRGSL 720 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ LLA+ R + ++ + + W L+ R+ T GMRNSNC+AIAPTATI+N Sbjct: 721 WDRGILPQDTLKLLADARGGYVEVDSSESMDWASLRSRIATHGMRNSNCVAIAPTATISN 780 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I Sbjct: 781 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLSRI 840 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +R+P DL+ I+ATAFE+D WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL Sbjct: 841 DRVPADLRAIYATAFEVDATWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWL 900 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD------------------------ 930 GLKTTYYLR+ +AT VEKST+ G LNAVP D Sbjct: 901 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSGDGGAGSFGVGGGAASSGTKGGFQAS 958 Query: 931 ---------PNSSTHSLGIPSSCTSDT------ECEVCQ 954 P C ECE CQ Sbjct: 959 AASAAATSVPAVEAAPEADGPVCMMRPGDPGFEECEACQ 997 >gi|194290771|ref|YP_002006678.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193224606|emb|CAQ70617.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 979 Score = 990 bits (2559), Expect = 0.0, Method: Composition-based stats. Identities = 562/978 (57%), Positives = 700/978 (71%), Gaps = 35/978 (3%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGV---QVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 + G P+ ++I+RNG V +F+PSKI+ A+ KAF+AV G Sbjct: 10 TGGAAAGVASQAPTTQQTPSAATSNYPDHKIIRRNGAVVAFEPSKIAVAMTKAFLAVNGG 69 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 + S RV++I++ LT+ V L++ S +HIED+QDQVE SLM+SG H++ R YVL Sbjct: 70 QGAASARVREIVEQLTDNVVRALVRSRPSGGAIHIEDVQDQVELSLMRSGEHEVARAYVL 129 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDD-GTLISFNSKRLEMIVEEACSGLQD-VSS 178 YRE+R RA+ S + I + D G + L +++ ACSGL D VS+ Sbjct: 130 YREKRKAERASASAQAVARVQEAGISINVTDAGVTKPLDIVALHALIDNACSGLGDAVSA 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + +L ET KN+Y+G+ + + + I ++RTLIEK+P+Y++VTAR LL +R+E+L T Sbjct: 190 EPILKETLKNLYEGVPMTQVYDSAILAARTLIEKDPDYSQVTARILLHTIRKEILGT--- 246 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 + T EM Y EYF ++I G+ A LL E + FDL L L RDF F YLGL Sbjct: 247 ---EVTQAEMATRYAEYFPKFIARGIAAELLDEKLATFDLARLGAALDAGRDFQFNYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTL Sbjct: 304 QTLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDREARAIEFYQLLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT+ QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTQRSQLSSCYLTTVSDDLEGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV +NA WTLFSP DLHD GK FE AY YE +A GE+K+F+ Sbjct: 484 MNTANWIPDLFMKRVMENAEWTLFSPSTCPDLHDKVGKAFEKAYLGYEAKAANGELKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 K+ A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E A Sbjct: 544 KVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH A D+ KL TIRTA+R+LDNVIDIN + +EKA+ SN H Sbjct: 604 VCNLGSVNLVAHLAKQADGSYALDHAKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LH+L PY+S AV+ AD SME + ++A AS ELA+ERG Y ++ G Sbjct: 664 RPVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYQASTELAEERGRYETYTG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P DS+ LLAE R L ++ +S + W L+ R+K GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDSLKLLAEERGGYLDVDMSSSMDWTSLRARIKQHGMRNSNCIAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DGS+ Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ A Sbjct: 844 RIDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS----------THSLGIPS 942 WL GLKTTYYLR+ +AT VEKST+ G LNAV + S + Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTVSR--GSLNAVSSGSDSGSALDAAAASAPAMPEAEGA 961 Query: 943 SCTSDT------ECEVCQ 954 CT ECE CQ Sbjct: 962 VCTMRPGDPGFEECEACQ 979 >gi|71734708|ref|YP_275880.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555261|gb|AAZ34472.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 970 Score = 989 bits (2557), Expect = 0.0, Method: Composition-based stats. Identities = 550/969 (56%), Positives = 693/969 (71%), Gaps = 26/969 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC L +V + ++ + Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACESLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G++K+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 724 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R + ++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 725 LDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 784 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 844 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 904 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 961 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 962 DEPDCEACQ 970 >gi|299134881|ref|ZP_07028073.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp. 1NLS2] gi|298590691|gb|EFI50894.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia sp. 1NLS2] Length = 967 Score = 989 bits (2557), Expect = 0.0, Method: Composition-based stats. Identities = 609/953 (63%), Positives = 737/953 (77%), Gaps = 16/953 (1%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71 + PS + P +Q+I+RNG V+ FDPSKIS A+ KAF+AVEG A+ S RV + Sbjct: 21 DSLAPSPSEPA------MQIIRRNGTVSRFDPSKISIAMTKAFLAVEGHTAAASRRVHEA 74 Query: 72 IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131 ++ LT++ V L + HIED+QDQVE +LM+S HHK+ R YVLYREER+ RAA Sbjct: 75 VEQLTQEVVGTLTRRLGEGRTFHIEDVQDQVELALMRSEHHKVARAYVLYREERARERAA 134 Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191 S + + P L++ + +G + + KR E+I+ EAC GL V VL+E +N+YD Sbjct: 135 DRASTTVSSNEPTLQMTLANGARVPLDLKRFELIIREACEGLDAVDPAPVLAEARRNLYD 194 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 G+S+ +L A I ++RTL+E+EPNYA V+AR LL+KLR EVL+ V+ P A+ +M Sbjct: 195 GISQDELALASIMAARTLVEQEPNYAYVSARLLLDKLRSEVLSFVHGTPTSASQSDMATR 254 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 Y EYF YI+ G++A LL + DL LA+ LK ERD F++LGLQ LYDRYFLH++G Sbjct: 255 YAEYFPAYIKTGIEAELLDPELGRHDLARLASALKPERDMLFQFLGLQTLYDRYFLHVHG 314 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 +RIE+PQAFFMRVAMGLA++E ++E RA+EFYNLLSSF FM STPTLFNSGT PQLSSC Sbjct: 315 ARIELPQAFFMRVAMGLAMREIDREGRAIEFYNLLSSFDFMASTPTLFNSGTLRPQLSSC 374 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FLTTV DDL GIF A+++NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLKVA Sbjct: 375 FLTTVADDLDGIFKAVKDNALLAKYSGGLGNDWTPVRGLGAHIKGTNGESQGVVPFLKVA 434 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTA+AVNQGGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFM+ Sbjct: 435 NDTAIAVNQGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQ 494 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV Q+ WTLFSPDE +LHDLYG F+ AYE YE +A RGE++VF+++ A LWR+MLT Sbjct: 495 RVEQDGEWTLFSPDETPELHDLYGPRFKAAYEAYEAKAARGEMRVFKQVRATDLWRRMLT 554 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGSINLL H Sbjct: 555 MLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSINLLNHT 614 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D +KL TI TAVR+LDNVIDIN +TI +A++SN HR +GLGLMGFQ ALH+ Sbjct: 615 TREGLDQNKLKRTITTAVRMLDNVIDINFYTIPEARRSNLKHRPVGLGLMGFQDALHVQR 674 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 IP AS AV AD SME IS+HAISAS +LA ERG Y SF GSLW QG+ PIDS+ +L++ Sbjct: 675 IPIASEAAVAFADASMEIISYHAISASADLAVERGRYPSFDGSLWSQGILPIDSVAVLSK 734 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 RD A+N + L W L++RV+ GMRNSN MAIAPTATI+NICGV+QSI+PSYQNL+V Sbjct: 735 SRDGTALNASMTLDWTGLRERVRKDGMRNSNVMAIAPTATISNICGVAQSIEPSYQNLFV 794 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSNMSGDFTVVN LV +LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE+ Sbjct: 795 KSNMSGDFTVVNEHLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEV 854 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 D WLIESA+RRQKWIDQAQSLNLY+ PSGKKLD +YR AW +GLKTTYYLRSRSAT V Sbjct: 855 DTSWLIESAARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWQLGLKTTYYLRSRSATHV 914 Query: 912 EKSTLKGVDGKLNAVPVTD---------PNSSTHSLGIPSSCTSD-TECEVCQ 954 EKSTLKG DGKLNAV + PN++ L +C+ D +CE CQ Sbjct: 915 EKSTLKGTDGKLNAVSASGMLAHAPIIVPNATAPDLDGVKACSIDNPDCEACQ 967 >gi|329893651|ref|ZP_08269785.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC3088] gi|328923578|gb|EGG30890.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC3088] Length = 922 Score = 988 bits (2555), Expect = 0.0, Method: Composition-based stats. Identities = 558/926 (60%), Positives = 694/926 (74%), Gaps = 8/926 (0%) Query: 32 IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91 IKRNG V FD SKIS AI KAF+AVEG A+ S R+ + + LT Q + + S Sbjct: 2 IKRNGQVVPFDNSKISVAITKAFLAVEGGTAAASSRIHETVAKLTTQVMGTFERRMPSGG 61 Query: 92 IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP-IAPKLKIMMD 150 +HIEDIQDQVE +LM++G HKI R+YV+YREE++ RA + ++A A + ++ Sbjct: 62 TIHIEDIQDQVELALMRAGEHKIARDYVIYREEQARKRAQKRALSAEAERAAGAISVLQP 121 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 DG+ + +RL+ +V EAC+ L DVS+ +L E +N+YDG++ ++ T+L+ ++RTLI Sbjct: 122 DGSRAPLDIERLQTVVSEACADLADVSASKILEEALRNLYDGVTLDEVTTSLVITARTLI 181 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 E+EPNY AR L + LR E L Q+AT EM YP+ YI +G++ LL Sbjct: 182 EQEPNYTYAAARLLCDDLRSEAL-EFLGVTQRATQQEMALYYPQALQAYIAKGIQLELLS 240 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 + DFD+ L ++ ERD F YLGLQ LYDRYF+H N +R E+PQ FFMR+AMGLA+ Sbjct: 241 PELADFDIARLGAAIQPERDLQFTYLGLQTLYDRYFIHSNETRFELPQVFFMRIAMGLAV 300 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 +E +K RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+GA+++N Sbjct: 301 REDDKNARAIEFYQLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIRDN 360 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCA Sbjct: 361 ALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCA 420 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLETWH+D+EEFL+LRKNTGDDRRRTHDMN+ANWIPDLFMKRV + WTLFSP++ DL Sbjct: 421 YLETWHLDIEEFLELRKNTGDDRRRTHDMNSANWIPDLFMKRVFEGGEWTLFSPNDTPDL 480 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 HD YG +FE YE YE Q GE+K+F+++ A LWRKML MLFETGHPWITFKDPCN+R Sbjct: 481 HDSYGADFEAKYEAYEAQTRSGELKLFKRVKAENLWRKMLGMLFETGHPWITFKDPCNLR 540 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 SPQ HVGVVHSSNLCTEITLN+S EE AVCNLGS+NL H N + +KL T+ TAVR Sbjct: 541 SPQSHVGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLPQHIDENGLNLEKLQKTVTTAVR 600 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVIDIN +++ +A++SN HR +GLGLMGFQ AL+ HI Y+SPEAVE AD SME I Sbjct: 601 MLDNVIDINYYSVPQAERSNFRHRPVGLGLMGFQDALYKQHIAYSSPEAVEFADRSMEAI 660 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDE 748 S++AI AS LA+ERG YSSF+GSLW QG+ PIDS+ LAE R L ++RT L WD Sbjct: 661 SYYAIQASSALAEERGTYSSFEGSLWSQGILPIDSLERLAESRGDQYLQIDRTQTLDWDT 720 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++RV+ GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTVVN +LVN Sbjct: 721 LRERVRAKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVN 780 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +LK R+LWD+ M++DLKY+DGS I+RIP DLK I++TAFE++P W++E+ASRRQKWID Sbjct: 781 DLKARNLWDKVMVNDLKYYDGSAQAIDRIPADLKAIYSTAFEVEPRWIVEAASRRQKWID 840 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QAQSLNLY++ SGKKLD YR AWL GLKTTYYLRS +AT EKST+ G LNAV Sbjct: 841 QAQSLNLYINNASGKKLDVTYRMAWLSGLKTTYYLRSLAATGTEKSTVD--KGTLNAVAA 898 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 D +CE CQ Sbjct: 899 AAAPQPAPVPKA--CSLDDPDCEACQ 922 >gi|152979866|ref|YP_001354669.1| ribonucleotide-diphosphate reductase subunit alpha [Janthinobacterium sp. Marseille] gi|151279943|gb|ABR88353.1| ribonucleoside-diphosphate reductase alpha chain [Janthinobacterium sp. Marseille] Length = 963 Score = 987 bits (2551), Expect = 0.0, Method: Composition-based stats. Identities = 552/960 (57%), Positives = 691/960 (71%), Gaps = 16/960 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P++ N PS + + ++I+RNG V F+PSKIS A+ KAF+AV G Sbjct: 12 PTEIGNIASLAVAPSTSNTQTVGLGEHRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQG 71 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT V L++ + HIEDIQDQVE +LM+SG H + R YVLYR Sbjct: 72 AASARVRELVEQLTSNVVNALVRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 131 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181 +R + RA Q +K A +L + +DG + ++ ++ AC GL+ V ++ + Sbjct: 132 AKRMEERAQQQAAKPVAETH-QLHVT-EDGQRRPLDMNQVRDLINAACIGLEKHVDAEAI 189 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L ET KN+YDG+ +L + I ++R L+EK+P Y+ VTAR L+ +R+EV Sbjct: 190 LHETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKEVFG------L 243 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + + Y EYF ++I++G++A LL + FDL L + L ERD F YLGLQ L Sbjct: 244 EVAQADAPAQYLEYFPKFIKKGIEAELLDAKLGQFDLKKLGDALVPERDLQFGYLGLQTL 303 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI +RIEMPQAF+MRVAMGLAL E +E+RA+EFYNLLSSF FM STPTLFNS Sbjct: 304 YDRYFLHIRDTRIEMPQAFYMRVAMGLALNEINREERAIEFYNLLSSFDFMSSTPTLFNS 363 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT+ QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+S Sbjct: 364 GTQRSQLSSCYLTTVADDLDGIYEAIKENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRS 423 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT Sbjct: 424 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNT 483 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV + WTLFSP + DLHD GK FE AY YE +A RGE+K+F+KI Sbjct: 484 ANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEAAYTGYEAKAARGELKLFKKIQ 543 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCN Sbjct: 544 ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 603 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+N+ AH + Q D+ KL T+RTA+R+LDNVIDIN + ++KA+ SN HR +GLG+M Sbjct: 604 LGSVNMPAHMKDGQLDHVKLQKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIM 663 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ LH++ IPYAS EAV+ AD SME + ++A AS ELA+ERG YSS++GSLWD+G+ Sbjct: 664 GFQDCLHMMRIPYASDEAVQFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRGIL 723 Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 P DS+ LL E R L + T L W L++R+K GMRNSNC+AIAPTATI+NI GVS Sbjct: 724 PQDSLKLLQEERGGYLEADLTETLDWTPLRERIKQFGMRNSNCVAIAPTATISNIIGVSA 783 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I+P+YQNLYVKSN+SG+FT +N +LV +LK R LWDE MISDLKY DGS+ I+RIP D Sbjct: 784 CIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQD 843 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 L+ I++TAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTT Sbjct: 844 LRDIYSTAFEVEPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 903 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 YYLR+ AT EKST K + + +C ECE CQ Sbjct: 904 YYLRTMGATHTEKSTSKTGALNAVDSGAPSSAAQAAAETDGPACMLRPGDAGFEECEACQ 963 >gi|330980157|gb|EGH78343.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 971 Score = 987 bits (2551), Expect = 0.0, Method: Composition-based stats. Identities = 549/969 (56%), Positives = 694/969 (71%), Gaps = 24/969 (2%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 ++ G A + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 8 ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++ + P ++I DG+ + RL IV EAC GL +V + ++ +E Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L AT Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245 Query: 245 HHEMQCLYPEYFCRYIEEG-VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 HHEM LY + Y+ +K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 246 HHEMADLYAKALPAYVTPAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 305 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 365 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 426 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 485 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 486 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 545 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 546 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 605 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H + + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 606 GSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 665 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P Sbjct: 666 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILP 725 Query: 723 IDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +DS +L E R ++++ L W ++ RV+ G+RNSN MAIAPTATIANI GVSQ Sbjct: 726 LDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQ 784 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ IERIP + Sbjct: 785 SIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQE 844 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTT Sbjct: 845 LKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKTT 904 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS---------------SCT 945 YYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 905 YYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAPAGPAPVPKACAI 962 Query: 946 SDTECEVCQ 954 + +CE CQ Sbjct: 963 DEPDCEACQ 971 >gi|83719828|ref|YP_441700.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis E264] gi|257137869|ref|ZP_05586131.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis E264] gi|83653653|gb|ABC37716.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia thailandensis E264] Length = 995 Score = 987 bits (2551), Expect = 0.0, Method: Composition-based stats. Identities = 555/994 (55%), Positives = 702/994 (70%), Gaps = 56/994 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLAGGAQGAPALASQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + ++P + + D+G + + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+++K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN--------------------- 932 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGATGGD 961 Query: 933 ------SSTHSLGIPSSCTSDT------ECEVCQ 954 ++ CT ECE CQ Sbjct: 962 APSGAMNAAPIEADGPVCTMRPGDPGFEECEACQ 995 >gi|82703583|ref|YP_413149.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosospira multiformis ATCC 25196] gi|82411648|gb|ABB75757.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC 25196] Length = 956 Score = 987 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 546/960 (56%), Positives = 701/960 (73%), Gaps = 20/960 (2%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P + + + PS P + ++I+RNG V F+P+KIS A+ KAF+AVEG Sbjct: 9 PRPAMAGYEFSSNPSGHDP---RYSQYKIIRRNGSVAGFEPNKISIAMTKAFLAVEGSQG 65 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV++++ LTE V L++ S HIEDIQDQVE +LM+SG H + R YVLYR Sbjct: 66 AASARVREVVARLTEDVVNALMRRQPSGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 125 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIV 181 E+R+ RA Q + + L ++ +DG + ++ RL ++ C GL + V ++ Sbjct: 126 EDRARKRAQQKEAGAAEAAGSVLNVL-EDGRRVPLDTARLLALIGSCCEGLGEGVDPALI 184 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L T K++YDG+ ++ ++I S+R L+EKEP Y+ VTAR LL LR EVL + Sbjct: 185 LKATLKDLYDGVPMEEVRKSVILSARALLEKEPAYSYVTARLLLHSLRFEVLG------E 238 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + EM Y EYF +I+ G++A LL E + FDL LA L ERD F YLGLQ L Sbjct: 239 EIVQREMAGRYMEYFPAFIKRGIEAELLDERLAQFDLPRLAQALHAERDLKFGYLGLQTL 298 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI RIE+PQAFFMRVAMGLAL E ++E RA+EFY++LS+F FM STPTLFNS Sbjct: 299 YDRYFLHIQERRIELPQAFFMRVAMGLALNEIDREARAIEFYHVLSNFDFMSSTPTLFNS 358 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GTR QLSSC+LTTVPDDL GI+ ++ENA+LAKY+GGLGNDWT VR +G+HI GTNGKS Sbjct: 359 GTRRSQLSSCYLTTVPDDLDGIYEGIKENALLAKYAGGLGNDWTRVRAMGSHIKGTNGKS 418 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV +DTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 419 QGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNT 478 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A W+PDLFMKRV + WTLFSP +V DLH+ YGK FE AY YE + RGE+ +++ I Sbjct: 479 ATWVPDLFMKRVMEGGEWTLFSPSDVPDLHEKYGKAFEQAYLAYEDKVARGELDLYKTIP 538 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 AV LWRKML+MLFETGHPWITFKD CNIRSPQ H+GVVHSSNLCTEITLN++ +E AVCN Sbjct: 539 AVQLWRKMLSMLFETGHPWITFKDACNIRSPQNHIGVVHSSNLCTEITLNTNDQEIAVCN 598 Query: 602 LGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 LGSINL AH + D DKL T+ A+R+LDNVIDIN + + KA+ SN HR +GLG+ Sbjct: 599 LGSINLAAHIDDGGKLDADKLKRTVSLAMRMLDNVIDINFYAVAKARNSNLRHRPVGLGI 658 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ LH + IPYAS EAVE AD +ME +++HA AS ELA+ERG Y+S++GSLWD+G+ Sbjct: 659 MGFQDCLHRMRIPYASDEAVEFADRTMEAMAYHAYWASTELAEERGRYASYRGSLWDRGI 718 Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P D++ LL E R + +R+S L W+ L++R++ GMRNSNC+AIAPTATI+NI GVS Sbjct: 719 LPQDTLDLLQEERGGYIEADRSSTLDWEALRERIRNHGMRNSNCLAIAPTATISNIVGVS 778 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI+P+++NLYVKSN+SG+FT+ N +LV++LK+ LWDE MISD+KY DG++G I+R+P Sbjct: 779 ASIEPTFKNLYVKSNLSGEFTIANQYLVSDLKKLGLWDEVMISDIKYFDGALGKIDRVPT 838 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +L+K++ATAFE++P WLIE+A+RRQKWIDQ+QSLN+Y+ SGKKLD Y+ AW+ GLKT Sbjct: 839 ELRKLYATAFEVEPQWLIEAAARRQKWIDQSQSLNIYIASVSGKKLDETYKLAWVRGLKT 898 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS-----SCTSDTECEVCQ 954 TYYLRS ATS EKST++ G LNAVP + + +P+ D ECE CQ Sbjct: 899 TYYLRSLGATSAEKSTVQA--GSLNAVPAEGSLPAMGAAAVPATDVSFCSVDDPECESCQ 956 >gi|239813963|ref|YP_002942873.1| ribonucleotide-diphosphate reductase subunit alpha [Variovorax paradoxus S110] gi|239800540|gb|ACS17607.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax paradoxus S110] Length = 971 Score = 987 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 538/972 (55%), Positives = 701/972 (72%), Gaps = 35/972 (3%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 PS + + + P + + Q+I+RNG V F+P+KI+ A+MKAF+AV G Sbjct: 15 PSTPTQQQRD----TAGSPAGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQG 70 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S V++ + LT+ + +++ HIED+QDQVE LM+ GHH+I R YVLYR Sbjct: 71 AASASVRETVDALTQGVIRAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYR 130 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E R+ R+ + +AP P L ++ D+G ++ + +L+ ++E AC L D +++ + Sbjct: 131 ERRTQERS--KQVEQEAPATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR LL + +E++ + Sbjct: 188 VAETMRNLYDGVPLDEVYKASILAARTLIEKDPDYTFATARLLLHTIFKEIIG------R 241 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + E Y +YF ++I++GV+ LL E ++ +DL L LK ERD F+YLGLQ L Sbjct: 242 EVMPAERATAYADYFPQFIKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLH+ SRIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+ Sbjct: 302 YDRYFLHVRKSRIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNA 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+S Sbjct: 362 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGES 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFM+RV + WTLFSP V DLHDL+G +FE AY YE +A RGEIK R I Sbjct: 482 ANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQ 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVCN Sbjct: 542 ASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCN 601 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NLL H + + D +KL TI TA+R+LDNVIDIN + ++KA+ SN HR +GLGLM Sbjct: 602 LGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLM 661 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ L IPYAS EAV+ ADESME I +HA AS ELA+ERG YSS+KGSLWD+G+ Sbjct: 662 GFQDALYELRIPYASQEAVQFADESMEAICYHAYWASTELARERGKYSSYKGSLWDKGIL 721 Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PID++ LL + R + ++R++ L W+ L++++K GMRNSNC+AIAPTATI+NI GV Sbjct: 722 PIDTLDLLEKARGGYVEVDRSATLDWEALRQKIKADGMRNSNCVAIAPTATISNIIGVDA 781 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P + NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P D Sbjct: 782 SIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQD 841 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 +K ++ATAFE++ WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTT Sbjct: 842 VKALYATAFEVETTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 901 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST------------------HSLGIPS 942 YYLR++SAT EKST++ G+LNAV SS + I Sbjct: 902 YYLRTQSATHAEKSTVQ--SGRLNAVSSGSDASSGMSALEAAAAAAKAQMSAMPATDIAF 959 Query: 943 SCTSDTECEVCQ 954 D CE CQ Sbjct: 960 CGVDDPTCEACQ 971 >gi|124268398|ref|YP_001022402.1| ribonucleotide-diphosphate reductase subunit alpha [Methylibium petroleiphilum PM1] gi|124261173|gb|ABM96167.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum PM1] Length = 971 Score = 987 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 546/959 (56%), Positives = 698/959 (72%), Gaps = 32/959 (3%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S A P G Q+I+RNG V +F+P+KI+ A+MKAF+AV G + S V++++ LT Sbjct: 24 SRAAPGSSAYAGYQIIRRNGAVVAFEPNKIAVALMKAFLAVHGTQGAASASVREMVDGLT 83 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E V LL+ HIED+QD VE LM+ GHH+I R YVLYRE R+ RA Q + Sbjct: 84 ESVVRALLRSRPGGGTFHIEDVQDAVELGLMRGGHHEIARAYVLYRERRAQERAKQGAAP 143 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSE 195 +A L ++ G + ++ RL+ +VE AC+ L +V + +L+ET +N+YDG+ Sbjct: 144 VTPAVA--LHVIDR-GQRVPLDTGRLQALVESACANLGSEVQAAPILAETQRNLYDGVPI 200 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 ++ A I ++RTLIEK+P Y + TAR LL +RRE+L + H EMQ Y +Y Sbjct: 201 DEVYKAAILAARTLIEKDPAYTRATARLLLHTIRREILG------GEVLHEEMQQRYADY 254 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F +I++GV+A LL E +M +DL L LK +RD F+YLGLQ LYDRYFLH+ +RIE Sbjct: 255 FPGFIKQGVEAELLDERLMQYDLRRLGEALKADRDLQFDYLGLQTLYDRYFLHVRKARIE 314 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSGTR QLSSC+LTT Sbjct: 315 LPQAFFMRVAMGLALNEVDREARAIEFYEVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTT 374 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V DDL GI+ A++ENA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTA Sbjct: 375 VADDLDGIYEAIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTA 434 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV + Sbjct: 435 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVIE 494 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 WTLFSP DLHD +G FE AY YE++ADRGE+K+++++ A LWRKML+MLFE Sbjct: 495 GGDWTLFSPSTCPDLHDKFGIAFEQAYTAYEQKADRGELKLYKRVPAKDLWRKMLSMLFE 554 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 TGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL H + Sbjct: 555 TGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNGSEIAVCNLGSVNLAQHLMHGA 614 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+ KL T+ TA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ +L+ L Sbjct: 615 EGLEIDHAKLRKTVSTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDSLYQLR 674 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 I YAS +AVE AD SME + +HA AS ELA+ERG YSS+KGSLWD+G+ PIDS+ LLAE Sbjct: 675 IAYASQQAVEYADRSMEAVCYHAYWASTELAEERGRYSSYKGSLWDRGILPIDSLDLLAE 734 Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++R++ L WD L+ R++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL Sbjct: 735 QRGGYVDVDRSTSLDWDALRARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNLS 794 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P++LK ++ATAFE Sbjct: 795 VKSNLSGEFTVINEYLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAFE 854 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTYYLR+ AT Sbjct: 855 VEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKTTYYLRTVGATH 914 Query: 911 VEKSTLKGVDGKLNAVPVTD---------------PNSSTHSLGIPSSCTSDTECEVCQ 954 EKST+K G LNAV SS + + D CE CQ Sbjct: 915 AEKSTVKA--GHLNAVSSGSGGVDAVAAAAQAQFDAASSVPATDMKFCAIDDPTCEACQ 971 >gi|171463020|ref|YP_001797133.1| ribonucleoside-diphosphate reductase, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192558|gb|ACB43519.1| ribonucleoside-diphosphate reductase, alpha subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 990 Score = 986 bits (2549), Expect = 0.0, Method: Composition-based stats. Identities = 550/958 (57%), Positives = 694/958 (72%), Gaps = 33/958 (3%) Query: 21 PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80 ++ ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++ ++ LT V Sbjct: 42 TQATQLSDYKIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVV 101 Query: 81 TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140 LL+ + HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAAQ + Sbjct: 102 RALLRSRPNGGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVSQEVQ 161 Query: 141 IAPK-----LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLS 194 A + +K+ D+G + L ++E AC GL + + +++ET KN+YDG+ Sbjct: 162 TANQAGESGIKVT-DNGVEKWLDMAALRTVMEAACEGLGTHIDASPIVTETIKNLYDGVP 220 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + + + I +SRTLIEK+P Y++VTAR L+ + +E+L ++ +MQ Y Sbjct: 221 MAQVYDSAILASRTLIEKDPAYSQVTARILMHVIHKEILG------KEVLQGDMQAEYST 274 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 YF +YI EG+ A LL M +FDL LA L RD F YLGLQ LYDRYFLHI RI Sbjct: 275 YFAKYINEGISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRI 334 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 EMPQAFFMRVAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T PQLSSC+LT Sbjct: 335 EMPQAFFMRVAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLT 394 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDT Sbjct: 395 TVEDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDT 454 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+T+NWIPDLFMKRV Sbjct: 455 AVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMSTSNWIPDLFMKRVM 514 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +N WTLFSP DLH +GK FE AY YE++ADRGE+K FR+I A LWRKML MLF Sbjct: 515 ENGEWTLFSPSNTPDLHGKFGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLF 574 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612 ETGHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN++ +E AVCNLGS+NL AH Sbjct: 575 ETGHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNTNEDEIAVCNLGSVNLTAHMTTD 634 Query: 613 ---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D++KL T+RTA+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LH+ Sbjct: 635 ANGKMILDHEKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHM 694 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 IPYAS EAV+ AD SME + ++A AS ELA+ERG YS++KGSLWD+G+ P DS+ LL Sbjct: 695 QRIPYASDEAVKFADSSMEAVCYYAYQASNELAEERGVYSTYKGSLWDRGILPQDSVALL 754 Query: 730 AEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 A R L ++ +S + W+ L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QN Sbjct: 755 AAERGGYLEVDSSSTMDWNGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQN 814 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L+VKSN+SG+FTVVN +LV +LK R LWDE MI+DLKY DG++ I+RIP DL+ ++ATA Sbjct: 815 LFVKSNLSGEFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATA 874 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +A Sbjct: 875 FEVDPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAA 934 Query: 909 TSVEKSTLKGVDGKLNAVPVT------DPNSSTHSLGIPSSCTSDT------ECEVCQ 954 T VEKST+ G+LNAV D ++ CT ECE CQ Sbjct: 935 THVEKSTV--ASGQLNAVSSGGGVNGTDAAAAGGVEADGPVCTMRPGDAGFEECEACQ 990 >gi|256822963|ref|YP_003146926.1| ribonucleoside-diphosphate reductase subunit alpha [Kangiella koreensis DSM 16069] gi|256796502|gb|ACV27158.1| ribonucleoside-diphosphate reductase, alpha subunit [Kangiella koreensis DSM 16069] Length = 957 Score = 986 bits (2549), Expect = 0.0, Method: Composition-based stats. Identities = 567/956 (59%), Positives = 720/956 (75%), Gaps = 12/956 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 S + + P + P ++VI+RNG VT +D SKI A+ KAF+AVEG A Sbjct: 10 QSAAKTPTNTPSRPEIEATKPG---EIRVIRRNGKVTPYDDSKIEVAMTKAFLAVEGGAA 66 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV + ++ LT+Q + I+HIED+QDQVE +LM++G K+ R YVLYR Sbjct: 67 AASSRVHETVRQLTKQITDAFKRRMPGGGIIHIEDVQDQVELALMRNGEQKVARSYVLYR 126 Query: 123 EERSDVRAAQSHSKSDAPI-APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 EERS RAA+ +K DA + ++ + ++DG+ + +RL +V EAC L DV + Sbjct: 127 EERSRERAARDTAKLDALVGDNQVMVTVEDGSKRPLDVERLHTVVVEACKDLSDVEPDQI 186 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L +T +N+YDG++ D AL+ ++RT+IEKEPNY VTAR LL+ +R E L + + Sbjct: 187 LKDTMRNLYDGVAIKDAYQALVMTARTMIEKEPNYTYVTARLLLDSIRSEALREL-GVAK 245 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 +AT EM +YPE F Y+ GV+ LL ++ FDL +AN +K ERD F YLG+Q L Sbjct: 246 RATQSEMNAIYPEAFKAYLSVGVENELLSPELLSFDLDKIANAIKPERDMLFTYLGIQTL 305 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 +DRYF+H + RIE+PQ F+MRVAMGLA+ E ++E RA+EFY++LS+FH+M STPTLFNS Sbjct: 306 FDRYFIHKDEVRIELPQVFWMRVAMGLAVNEDDREARAIEFYDVLSTFHYMSSTPTLFNS 365 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT PQLSSC+LT VPDDL GI+GA+++NA+L+K++GGLGNDWTPVRGLGA+I GTNGKS Sbjct: 366 GTLRPQLSSCYLTNVPDDLDGIYGAIKDNALLSKFAGGLGNDWTPVRGLGAYIKGTNGKS 425 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMN+ Sbjct: 426 QGVVPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNS 485 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANW+PDLF+KRV+ + WTLFSP+EV DLHDLYGKEFE YE YE A G+IK + I Sbjct: 486 ANWVPDLFLKRVSSDGDWTLFSPNEVPDLHDLYGKEFEERYEYYEEMAKYGKIKTAKTIP 545 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVC 600 A LWRKML+MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+ + EE AVC Sbjct: 546 ANVLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTKAGEEIAVC 605 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGS+NL H + + D ++L T+ TAVR+LDNVIDIN + ++ A+KSN HR +GLGL Sbjct: 606 NLGSVNLPKHMKDGKLDTEQLEKTVSTAVRMLDNVIDINFYPVDTARKSNMRHRPVGLGL 665 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ AL+L +IPY S AV+ AD +ME IS++AI AS +LA+ERG+Y SF GSLW QG+ Sbjct: 666 MGFQDALYLQNIPYTSEAAVDFADNAMEAISYYAIQASTDLAEERGSYESFAGSLWSQGI 725 Query: 721 FPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 PIDSI L E R + ++ +S + WD L++RVKTIGMRNSN MAIAPTATI+NI GV Sbjct: 726 LPIDSIEKLIEERGAEFIEVDTSSTMDWDTLRERVKTIGMRNSNVMAIAPTATISNISGV 785 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SQSI+P+YQNLYVKSN+SG+FTVVN ++V ELK R LWD M++DLKY++GS+ +I+RIP Sbjct: 786 SQSIEPTYQNLYVKSNLSGEFTVVNPYMVKELKARKLWDSVMVNDLKYYEGSLQHIDRIP 845 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 ++K++ ATAFE++P WL+E+ASRRQKWIDQAQSLNLY+ EPSGKKLD +YR AW GLK Sbjct: 846 SEIKELFATAFEVEPKWLVEAASRRQKWIDQAQSLNLYMSEPSGKKLDMVYRMAWFRGLK 905 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 TTYYLRS ATS EKST+ DGKLNAV ++ S + + +CE CQ Sbjct: 906 TTYYLRSLGATSTEKSTI--SDGKLNAVSSGP--AAVGSAAPKACAIDEPDCEACQ 957 >gi|92112800|ref|YP_572728.1| ribonucleotide-diphosphate reductase subunit alpha [Chromohalobacter salexigens DSM 3043] gi|91795890|gb|ABE58029.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens DSM 3043] Length = 976 Score = 986 bits (2548), Expect = 0.0, Method: Composition-based stats. Identities = 554/980 (56%), Positives = 685/980 (69%), Gaps = 41/980 (4%) Query: 11 DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70 D P A + ++VIKR G V +FD SKIS AI KAF+A EG A+ S R+++ Sbjct: 2 DTSISPGKASVDITAPQRLRVIKRGGEVAAFDGSKISVAITKAFIATEGDNAAASSRIRE 61 Query: 71 IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + T+ V L+ +HIEDIQDQVE +LM++G K+ R YVLYREE + R Sbjct: 62 FVSEATQSIVDTFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARAR- 120 Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190 Q A P L + DGT+ + R+E +V +AC GL +V + ++ + KN+Y Sbjct: 121 -QPQGADIAKPHPSLNVTQADGTVRPLDLGRVETLVADACEGLANVEPQKIVDASLKNLY 179 Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 DG+ + TAL+ ++RTL+EKEPNY TAR L + LRRE L + +AT+ EM Sbjct: 180 DGVPIDGVATALMMTARTLVEKEPNYTYATARLLQDNLRREAL-SFLGIADEATYQEMAT 238 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 LY F YI++G++ L E + +FDL L L + RD F YLGLQ LYDRYFLH + Sbjct: 239 LYAPAFKAYIDKGIEFEQLDERLREFDLDRLGAALDHTRDNQFTYLGLQTLYDRYFLHHD 298 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 R E+PQ FMRVAMGLAL E + E RA+EFY LLSSF +M STPTLFN+GT+ QLSS Sbjct: 299 DVRYELPQVMFMRVAMGLALNEDDPEARAIEFYELLSSFDYMASTPTLFNAGTQRSQLSS 358 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C+LTTVPD L GI+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV Sbjct: 359 CYLTTVPDQLDGIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKV 418 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTAVAVNQGGKRKGAVCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM Sbjct: 419 VNDTAVAVNQGGKRKGAVCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFM 478 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV + WTLFSP DLHDLYG FE Y YE G++K+F+++ A LWRKML Sbjct: 479 KRVFDDEEWTLFSPSTCPDLHDLYGAAFEKRYAEYEEMTRNGQLKLFKRVKAKDLWRKML 538 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 +MLFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S++E AVCNLGS+NL H Sbjct: 539 SMLFETGHPWITFKDPCNLRSPQNHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAQH 598 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + Q D DKL T++TAVR+LDNVIDIN + + +A+ SN HR +GLGLMGFQ AL+ L Sbjct: 599 IVDGQLDGDKLKKTVKTAVRMLDNVIDINYYAVPQARNSNFKHRPVGLGLMGFQDALYQL 658 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 I YAS +AV AD SME IS+HAI AS +LA ERG Y SF+GSLW +GV PIDSI LA Sbjct: 659 GIAYASDDAVTFADTSMELISYHAIEASSDLATERGRYQSFEGSLWSKGVLPIDSIAKLA 718 Query: 731 EVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 E R + ++ ++ W L+ +V GMRNSN MAIAPTATI+NICGV+QSI+P+YQN Sbjct: 719 EERGADYIEVDTSTTQDWARLRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQN 778 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L+VKSN+SG+FTVVN+++VN+LK R LWDE MI+DLKY+DGS+ I+RIPDDLK +A+A Sbjct: 779 LFVKSNLSGEFTVVNAYMVNDLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASA 838 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FE++P WL+E+A+RRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ A Sbjct: 839 FEVEPKWLVEAAARRQKWIDQAQSLNLYIAGVSGKKLDVTYRMAWFRGLKTTYYLRALGA 898 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPN---------------------------------SST 935 TSVEKST+ GKLNAV T + S Sbjct: 899 TSVEKSTVDR--GKLNAVGNTGGSASPQPAAAPSPSPSPAASDAGGEARGIDDFLTGKSG 956 Query: 936 HSLGIPSSCTSDT-ECEVCQ 954 PS+ D CE CQ Sbjct: 957 SGSRAPSAGDIDELGCEACQ 976 >gi|254492424|ref|ZP_05105596.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Methylophaga thiooxidans DMS010] gi|224462316|gb|EEF78593.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Methylophaga thiooxydans DMS010] Length = 976 Score = 986 bits (2548), Expect = 0.0, Method: Composition-based stats. Identities = 555/975 (56%), Positives = 702/975 (72%), Gaps = 33/975 (3%) Query: 13 DAFPSLAYPFPE-KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71 + P+ P G VI+RNG VT FD KI+ AI KAF+AVEG A S R+ D Sbjct: 2 ASEPAQTTHTPSSAESGYSVIRRNGKVTDFDSGKIAVAITKAFLAVEGDSAQNSRRIHDT 61 Query: 72 IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131 +K LT Q LL+ VHIEDIQDQVE +LM+ G +K+ R YV+YRE++S+ RA Sbjct: 62 VKKLTGQITDNLLRRLDDGGTVHIEDIQDQVELALMREGEYKVARSYVVYREKQSEKRAE 121 Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191 + L + + DGT + RL ++ EAC GL +V + +L +T +N++D Sbjct: 122 EEKKHPQPANETTLHVTLADGTRQPLDIDRLHNLITEACEGLAEVDREAILRDTQRNLFD 181 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 G+ ESD+E AL+ +RT IEK+P Y+ + AR L++ +RRE L+ V+K P++A +EM + Sbjct: 182 GVKESDVEKALVMGARTFIEKDPAYSTLAARLLMDGIRREALSFVFKMPKQAAQNEMVDI 241 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 YP+YF YI ++ L+ + FDL L LK E DF F YLGLQ LYDRYF+H +G Sbjct: 242 YPDYFKSYIHTAIEKELVDSELGLFDLDRLGKALKPELDFDFTYLGLQTLYDRYFIHYDG 301 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 +R E+PQAF+MRVAMGLA+ E +E+RA+EFYNLLSSF FM STPTLFNSGT PQLSSC Sbjct: 302 TRFELPQAFYMRVAMGLAINELNREERAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSC 361 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRGLGAHI GTNGKSQGV+PFLKVA Sbjct: 362 YLTTVPDDLSGIYNAMRDNALLSKYAGGLGNDWTRVRGLGAHIKGTNGKSQGVVPFLKVA 421 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQGGKRKGAVCAYLETWHID+EEFLD+RKNTGDDRRRTHDMNTANWIPD+FMK Sbjct: 422 NDTAVAVNQGGKRKGAVCAYLETWHIDIEEFLDMRKNTGDDRRRTHDMNTANWIPDMFMK 481 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV + WTLFSP+EV DLHDL G FE AY YE +A RGEI+ F+++ A LWRKML Sbjct: 482 RVAEEGQWTLFSPEEVDDLHDLTGLAFEKAYTEYEEKAARGEIRNFKQLPATDLWRKMLG 541 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+N++ H Sbjct: 542 MLFETGHPWVTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNMVKHI 601 Query: 612 ANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N D KL T+RTA+R+LDNVI+ N +++ +A+ SN HR +GLG+MGFQ AL+ L Sbjct: 602 DENGKLDTQKLQKTVRTAMRMLDNVIEYNYYSVPQARNSNLLHRPVGLGIMGFQDALYKL 661 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY+S E V+ ADESME +S++AI AS +LA ERG Y S++GSLW +G+ PIDSI LL Sbjct: 662 RLPYSSEETVKFADESMEAVSYYAIEASSDLAAERGKYQSYEGSLWSKGILPIDSIKLLQ 721 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 E R L + + + WD L+ ++K GMRNSN MAIAPTATI+NICGVSQSI+P+YQN+ Sbjct: 722 EARGEYLQQDDSQTMDWDALRDKIKRQGMRNSNTMAIAPTATISNICGVSQSIEPTYQNI 781 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +VKSN+SG+FTV+N ++V +LK RDLWDE MI+DLKY DGS+ +I+RIPD+LK ++ TAF Sbjct: 782 FVKSNLSGEFTVINPYMVEDLKARDLWDEVMINDLKYFDGSLQSIDRIPDELKALYTTAF 841 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 E+D WLIE+ASRRQKWIDQAQSLNLY+ EPSGKK+D +Y+ AW+ GLKTTYYLRS AT Sbjct: 842 EMDARWLIEAASRRQKWIDQAQSLNLYMAEPSGKKMDNLYKLAWVRGLKTTYYLRSMGAT 901 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSL-----------------------------GI 940 EK++ P ++ Sbjct: 902 GAEKTSSAPTPPPSAQKPTGPTPVASAPTASPVASSAAASAPLASAAADPEEFLGEGMEA 961 Query: 941 PSSCTS-DTECEVCQ 954 P +C+ + +CE CQ Sbjct: 962 PQACSILEPDCEACQ 976 >gi|91787005|ref|YP_547957.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas sp. JS666] gi|91696230|gb|ABE43059.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666] Length = 969 Score = 985 bits (2547), Expect = 0.0, Method: Composition-based stats. Identities = 537/972 (55%), Positives = 699/972 (71%), Gaps = 34/972 (3%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 + G+ + S A P + Q+I+RNG V F+P+KI+ A+MKAF+AV G + Sbjct: 11 TSGGLAGNPVSNDSSAPTNP--LAHYQIIRRNGSVVPFEPNKIAVAMMKAFLAVHGTQGA 68 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S V++ + LT+ + L++ HIED+QDQVE LM+ GHH+I R YVLYRE Sbjct: 69 ASASVRETVDGLTQAVIRALMRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRE 128 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVL 182 +RS RA Q + AP AP L + D G ++ + + L+ ++E +C+ L DV ++ Sbjct: 129 KRSQERARQPQ--TPAPEAPMLHVT-DGGQRVALDVRNLQALIEASCANLGADVKPDPIV 185 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 +ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR L+ +RREVL ++ Sbjct: 186 AETMRNLYDGVPIDEVYKASILAARTLIEKDPDYTYATARLLMHTIRREVLG------EE 239 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 + EM Y EYF ++I +GV+ LL E + FDL L LK ERD F+YLGLQ L+ Sbjct: 240 VSQEEMHSRYAEYFPKFIAKGVQNELLDEKLQQFDLARLGAALKPERDLKFDYLGLQTLF 299 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 DRYFLH+ RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+G Sbjct: 300 DRYFLHVRKQRIELPQAFFMRVAMGLSLGEIDREARAIEFYEILSSFDFMSSTPTLFNAG 359 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSC+LTTV DDL GI+ A++ENA+L+K++GGLGNDWTPVR LGAHI GTNG+SQ Sbjct: 360 TLRSQLSSCYLTTVADDLGGIYDAIKENALLSKFAGGLGNDWTPVRALGAHIKGTNGESQ 419 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA Sbjct: 420 GVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 479 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 NWIPDLFM+RV + WTLFSP + DLHD +GKEFE Y YE +A+RGEIK RK+ A Sbjct: 480 NWIPDLFMRRVMEKGTWTLFSPSDTPDLHDKFGKEFEKIYTAYEARAERGEIKPARKLQA 539 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 +WRKML+MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNL Sbjct: 540 TDMWRKMLSMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNL 599 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL+ H + D+DKL TI TA+R+LDNVIDIN + ++KA+ SN HR +GLG+MG Sbjct: 600 GSVNLVQHLKDGAIDHDKLKKTITTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGIMG 659 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ L+ L +PYAS EAVE AD+SME + +HA AS ELA+ERG Y+S+KGSLWD+G+ P Sbjct: 660 FQDCLYELRVPYASQEAVEFADKSMEAVCYHAYWASTELAKERGKYASYKGSLWDKGILP 719 Query: 723 IDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 +D++ +LAE R + ++R++ L WD L++++ GMRNSNC+AIAPTATI+NI GV Sbjct: 720 LDTLDMLAEERGGYVEVDRSATLDWDALRQKIAQDGMRNSNCVAIAPTATISNIIGVDAC 779 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ ++R+P ++ Sbjct: 780 IEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVVDLKHFDGSLRPVDRVPQEI 839 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K ++ATAFE++ W++E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTY Sbjct: 840 KALYATAFEVETSWIVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTY 899 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIPS 942 YLR+ AT EKST+K GK+N+V S ++ + I Sbjct: 900 YLRTMGATHAEKSTVKA--GKMNSVSSGPEASGSGKSALEVAAAAAQAQMNASPATDIKF 957 Query: 943 SCTSDTECEVCQ 954 D CE CQ Sbjct: 958 CAIDDPGCEACQ 969 >gi|167895963|ref|ZP_02483365.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 7894] Length = 995 Score = 985 bits (2546), Expect = 0.0, Method: Composition-based stats. Identities = 557/994 (56%), Positives = 701/994 (70%), Gaps = 56/994 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A ++A A + + D+G + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGETEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN--------------------- 932 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGAAGGD 961 Query: 933 ------SSTHSLGIPSSCTSDT------ECEVCQ 954 ++ CT ECE CQ Sbjct: 962 APSGAMNAAPVEADGPVCTMRPGDPGFEECEACQ 995 >gi|134294682|ref|YP_001118417.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia vietnamiensis G4] gi|134137839|gb|ABO53582.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia vietnamiensis G4] Length = 996 Score = 984 bits (2544), Expect = 0.0, Method: Composition-based stats. Identities = 549/995 (55%), Positives = 692/995 (69%), Gaps = 57/995 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSS 178 RE+R R + A + ++ D+G + L ++ AC GL V++ Sbjct: 131 REKRHLERQHAGEEAAAAGAESNTGINVV-DNGVTRPLDMNALRALIVSACDGLGTAVNA 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ +M Y EYF ++++ GV A LL + ++ FDL L L RD F YLGL Sbjct: 246 --EEVVQADMSARYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 304 QTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + + WTLFSP DLHD +G +FE AY YE + RGEIK+F+ Sbjct: 484 MNTANWIPDLFMKRVMEGSDWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++G Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LLAE R + ++ + L W L+ R+ GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWSTLRSRIAAHGMRNSNCVAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT----------------------- 929 WL GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSSGGAQGAAGGFGAAGGDVS 961 Query: 930 ----DPNSSTHSLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 962 SGGLNAAALAPVEADGPVCTMRPGDPGFDECEACQ 996 >gi|107021672|ref|YP_619999.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia AU 1054] gi|116688618|ref|YP_834241.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia HI2424] gi|170731917|ref|YP_001763864.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia MC0-3] gi|105891861|gb|ABF75026.1| Ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116646707|gb|ABK07348.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia cenocepacia HI2424] gi|169815159|gb|ACA89742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia cenocepacia MC0-3] Length = 1001 Score = 984 bits (2544), Expect = 0.0, Method: Composition-based stats. Identities = 552/1000 (55%), Positives = 688/1000 (68%), Gaps = 62/1000 (6%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178 RE+R R + A + ++ D+G + L ++ AC GL V+ Sbjct: 131 REKRHLERQHAGEEAAAAGGESATGINVV-DNGVTRPLDQNALRALIVSACDGLGAAVNP 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ EM Y EYF ++++ GV A LL + ++ FDL L L RD F YLGL Sbjct: 246 --EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + WTLFSP DLHD +G +FE AY YE + RGEIK+F+ Sbjct: 484 MNTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 544 KIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++G Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASQEAVEFADRSMEAVCYYAYHASTELAEERGRYSSYRG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTALRARIATHGMRNSNCVAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928 WL GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSSSGGAQGAAGGFGAAG 961 Query: 929 --------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 962 GAASSGAVNAAAALAPVEADGPVCTMRPGDPGFDECEACQ 1001 >gi|331006662|ref|ZP_08329943.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC1989] gi|330419530|gb|EGG93915.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [gamma proteobacterium IMCC1989] Length = 963 Score = 984 bits (2544), Expect = 0.0, Method: Composition-based stats. Identities = 559/958 (58%), Positives = 705/958 (73%), Gaps = 9/958 (0%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P+ ++VIKRNG V + KI+ A+ KAF+AVEG A Sbjct: 9 PTNTSPLEKSSTGSYQTSVTATAPGKLRVIKRNGTVMPYAEDKIAIAVTKAFLAVEGGTA 68 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV + +K T+Q + S VHIEDIQDQVE +LM++G HK+ R+YVLYR Sbjct: 69 AASSRVHETVKLFTQQISDTFNRRMPSGGTVHIEDIQDQVELTLMRNGEHKVARDYVLYR 128 Query: 123 EERSDVRAAQSHSKSDAPIA--PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 ER+ VRA+ + + S ++ PKL + +++G + R+ IV EAC GL DVS Sbjct: 129 AERARVRASATPAVSAEALSKYPKLNVTLENGDTAPLDMARIHTIVTEACEGLSDVSVDA 188 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L E +N+YDG++ SD+ T+L+ ++RTL+EKEPNY+ TAR L +KLR E L Sbjct: 189 ILDEAMRNLYDGVALSDINTSLVITARTLVEKEPNYSYATARLLQDKLRAEALG-FLGIA 247 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ATHHEM Y + YIE+G++ LL S+ +FD+ L L + RD F YLGLQ Sbjct: 248 EQATHHEMAHYYAQALPAYIEKGIELELLAPSLRNFDIPALGKALDHTRDSQFTYLGLQT 307 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYF+H N RIE+PQ FFMRVAMGLA++E + +RA+EFY LLSSF +M STPTLFN Sbjct: 308 LYDRYFIHSNDVRIELPQIFFMRVAMGLAVEEDKPTERAIEFYRLLSSFDYMSSTPTLFN 367 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LG++I GTNGK Sbjct: 368 AGTLRPQLSSCYLTTVPDDLHGIYGAMQDNAMLSKWAGGLGNDWTPVRALGSYIKGTNGK 427 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 428 SQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 487 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANW+PDLFMKRV WTLF+P E DLHDL G FE YE YER ADRGEIK F++I Sbjct: 488 TANWVPDLFMKRVFDKKEWTLFTPSEAPDLHDLCGTAFETRYEEYERMADRGEIKHFKRI 547 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAV 599 A +LWRKML MLFETGHPWITFKD CN+RSPQQHVGV+HSSNLCTEITLN+S+ +E AV Sbjct: 548 PAESLWRKMLGMLFETGHPWITFKDSCNLRSPQQHVGVIHSSNLCTEITLNTSAGDEIAV 607 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGS+NL H N + + KL +T+ TAVR+LDNVIDIN + +E A+ SN HR IGLG Sbjct: 608 CNLGSVNLAQHIENGELNTTKLEATVNTAVRMLDNVIDINYYAVEAARTSNMRHRPIGLG 667 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 LMGFQ AL+ Y+S +AVE AD SME IS+ AI+AS LA ERG Y +F+GSLW +G Sbjct: 668 LMGFQDALYKQGFAYSSDQAVEFADRSMEAISYFAINASSNLAAERGQYPTFEGSLWSKG 727 Query: 720 VFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 PIDSI L + R + M+R+ L W L+ +V+ GMRNSN MAIAPTATIANI G Sbjct: 728 ELPIDSIETLVKQRGEKYIEMDRSQTLDWSSLRSKVQKQGMRNSNVMAIAPTATIANITG 787 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 VSQSI+P+YQNLYVKSN+SG+FTVVN +L+++LK+RDLWD M++DLKY++GS+ +ERI Sbjct: 788 VSQSIEPTYQNLYVKSNLSGEFTVVNPYLIHDLKKRDLWDAVMVNDLKYYEGSVQKVERI 847 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P DLK ++ATAFE++P W++ +ASRRQKW+DQAQSLNLY+ +GKKLD YR AW GL Sbjct: 848 PADLKALYATAFEVEPRWIVSAASRRQKWLDQAQSLNLYIAGANGKKLDVTYRMAWYSGL 907 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 KTTYYLR+ SAT+ EKST+ G G LNAV +++ + +P +C+ D +CE CQ Sbjct: 908 KTTYYLRALSATTTEKSTVSG--GTLNAVSSNAESAAPVAAAVPKACSIDEPDCEACQ 963 >gi|145588392|ref|YP_001154989.1| ribonucleotide-diphosphate reductase subunit alpha [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046798|gb|ABP33425.1| ribonucleoside-diphosphate reductase, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 993 Score = 984 bits (2543), Expect = 0.0, Method: Composition-based stats. Identities = 548/957 (57%), Positives = 694/957 (72%), Gaps = 32/957 (3%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++ ++ LT V Sbjct: 44 ATQLSDYKIIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQGAASARVREQVEQLTHSVVRA 103 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 LL+ + HIEDIQDQVE +LM+SG H + R YVLYRE+R+ RAAQ ++ A Sbjct: 104 LLRSRPNGGTFHIEDIQDQVELALMRSGEHNVARAYVLYREKRNQERAAQQEVAQESQSA 163 Query: 143 PK-----LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSES 196 + +K+ D+G + L ++E AC GL + + +++ET KN+YDG+ + Sbjct: 164 GQATESGIKVT-DNGVEKWLDMAALRTVIEAACEGLGNHIDATPIITETIKNLYDGVPMA 222 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 + + I +SRTLIEK+P +++VTAR L+ +R+E+L ++ +MQ Y YF Sbjct: 223 QVYDSAILASRTLIEKDPAFSQVTARILMHVIRKEILG------KEVLQGDMQSEYGTYF 276 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 +YI EG+ A LL M +FDL LA L RD F YLGLQ LYDRYFLHI RIEM Sbjct: 277 AKYINEGISAELLDPRMREFDLPRLAAALNASRDLQFNYLGLQTLYDRYFLHIEDRRIEM 336 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQAFFMRVAMGL+L E ++E+RA+EFY +LS+F FM STPTLFNS T PQLSSC+LTTV Sbjct: 337 PQAFFMRVAMGLSLNELDRERRAIEFYEILSTFDFMSSTPTLFNSATTRPQLSSCYLTTV 396 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAV Sbjct: 397 EDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAV 456 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV +N Sbjct: 457 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEN 516 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSP DLHD YGK FE AY YE++ADRGE+K FR+I A LWRKML MLFET Sbjct: 517 GDWTLFSPSNTPDLHDKYGKAFEEAYVAYEQKADRGELKPFRRIPAQQLWRKMLGMLFET 576 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN++ E AVCNLGS+NL AH + Sbjct: 577 GHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNTNETEIAVCNLGSVNLTAHMTTDAN 636 Query: 617 -----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D++KL T+RTA+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ LH+ Sbjct: 637 GKLVLDHEKLQRTVRTAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHMQR 696 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 IPYAS EAV+ AD SME + ++A AS ELA+ERG YS++ GSLWD+G+ P DS+ LLA+ Sbjct: 697 IPYASEEAVKFADSSMEAVCYYAYQASNELAEERGVYSTYTGSLWDRGILPQDSVALLAQ 756 Query: 732 VR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R L ++ +S + W L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNL+ Sbjct: 757 ERGGYLEVDNSSTMDWSGLRARIKQYGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLF 816 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTVVN +LV +LK R LWDE MI+DLKY DG++ I+RIP DL+ ++ATAFE Sbjct: 817 VKSNLSGEFTVVNEYLVRDLKDRGLWDEVMIADLKYFDGTLSKIDRIPQDLRDLYATAFE 876 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT Sbjct: 877 VEPSWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDDTYKLAWLRGLKTTYYLRTMAATH 936 Query: 911 VEKSTLK-------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 VEKST+ G +N T +++ CT ECE CQ Sbjct: 937 VEKSTVASGQLNSVSSGGGVNGTDATAASAAGGVEADGPVCTMRPGDAGFEECEACQ 993 >gi|171318521|ref|ZP_02907673.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria MEX-5] gi|171096307|gb|EDT41213.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria MEX-5] Length = 1001 Score = 983 bits (2542), Expect = 0.0, Method: Composition-based stats. Identities = 551/1000 (55%), Positives = 692/1000 (69%), Gaps = 62/1000 (6%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRA--AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178 RE+R R + + + + + ++ D+G + L ++ AC+GL V+ Sbjct: 131 REKRHLERQHAGEEAAAAGGEASAGINVV-DNGVTRPLDMNALRELIVSACAGLGAAVNP 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ EM Y EYF ++++ GV A LL + ++ FDL L L RD F YLGL Sbjct: 246 --EEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + A WTLFSP DLHD +G +FE AY YE + RGEIK+F+ Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 544 KIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++G Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYHASTELAEERGRYSSYRG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LLAE R + ++ + L W L+ R+ GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTALRARIAAHGMRNSNCVAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP------------------------- 927 WL GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSGSGGAQGAAGGFGAAG 961 Query: 928 -------VTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 V + CT ECE CQ Sbjct: 962 GGASSGAVNAAPALAPVEADGPVCTMRPGDPGFDECEACQ 1001 >gi|206561766|ref|YP_002232531.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia cenocepacia J2315] gi|198037808|emb|CAR53752.1| putative ribonucleoside reductase [Burkholderia cenocepacia J2315] Length = 1003 Score = 983 bits (2542), Expect = 0.0, Method: Composition-based stats. Identities = 550/1000 (55%), Positives = 687/1000 (68%), Gaps = 62/1000 (6%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 19 RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 72 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 73 GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 132 Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178 RE+R R + A + ++ D+G + L ++ AC GL V+ Sbjct: 133 REKRHLERQHAGEEAAAAGGESTTGINVV-DNGVTRPLDLNALRALIVSACDGLGAAVNP 191 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 192 DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 247 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ EM Y EYF ++++ GV A LL + ++ FDL L L RD F YLGL Sbjct: 248 --EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 305 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 306 QTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 365 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 366 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 425 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 426 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 485 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + A WTLFSP DLHD +G +FE AY YE + RGEIK+F+ Sbjct: 486 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGADFEKAYTAYEDKVARGEIKLFK 545 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 546 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 605 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 606 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 665 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++G Sbjct: 666 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 725 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LL E R + ++ + L W L+ R+ GMRNSNC+AIAPTATI Sbjct: 726 SLWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATI 785 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 786 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 845 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 846 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 905 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928 WL GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 906 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGSGGSGSGGAQGAAGGFGAAG 963 Query: 929 --------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 964 GDASSGAINAAPALAPVEADGPVCTMRPGDPGFDECEACQ 1003 >gi|121606274|ref|YP_983603.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas naphthalenivorans CJ2] gi|120595243|gb|ABM38682.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas naphthalenivorans CJ2] Length = 967 Score = 983 bits (2541), Expect = 0.0, Method: Composition-based stats. Identities = 542/968 (55%), Positives = 700/968 (72%), Gaps = 32/968 (3%) Query: 8 NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67 + G + A P + Q+I+RNG V +F+PSKI+ A+MKAF+AV G + S Sbjct: 11 SSGVPASNSIHATPASGALANYQIIRRNGSVVAFEPSKIAVAMMKAFLAVHGTQGAASAS 70 Query: 68 VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127 V++ + LT+ V L++ S HIED+QDQVE LM+ GHH+I R YVLYRE+ + Sbjct: 71 VRETVDTLTQAVVRALMRSRPSGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYREKHNQ 130 Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETY 186 RA Q ++ P P+L +M D G ++ + + L+ ++E +C+ L DV ++SET Sbjct: 131 ERARQ--LQAQTPALPQLHVM-DGGKRVALDLRNLQALIEASCANLGTDVKPDPIVSETM 187 Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 +N+YDG+ ++ A I ++RTLIEK+P+Y TAR LL +R+EVL ++ +H Sbjct: 188 RNLYDGVPIEEVYKASILAARTLIEKDPDYTYATARLLLHTIRKEVLD------EEISHE 241 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 M Y YF +I +G+K LL E + FDL L LK ERD F+YLGLQ L+DRYF Sbjct: 242 AMAVRYVTYFPEFIAKGIKNELLDEKLQQFDLARLGAALKPERDLQFDYLGLQTLFDRYF 301 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 LHI RIE+PQAFFMRVAMGL+L ET++E RA+EFY +LSSF FM STPTLFN+GT Sbjct: 302 LHIRKQRIELPQAFFMRVAMGLSLNETDREARAIEFYEILSSFDFMSSTPTLFNAGTLRS 361 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSC+LTTV DDL GI+ A++ENA+L+K++GGLGNDWTPVR +GAHI GTNG+SQGV+P Sbjct: 362 QLSSCYLTTVADDLGGIYDAIKENALLSKFAGGLGNDWTPVRAMGAHIKGTNGESQGVVP 421 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 FLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIP Sbjct: 422 FLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIP 481 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 DLFM+RV + WTLFSP + DLHD +G++FE AY YE +A+RGE+K RK+ A +W Sbjct: 482 DLFMRRVMEKGSWTLFSPSDTPDLHDKFGQDFEKAYVAYEARAERGELKPSRKLQATDMW 541 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 RKML+MLFETGHPWITFKD CNIRSPQQH GVVHSSNLCTEITLN+S+ ETAVCNLGSIN Sbjct: 542 RKMLSMLFETGHPWITFKDACNIRSPQQHAGVVHSSNLCTEITLNTSATETAVCNLGSIN 601 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 L+ H + D+DKL TI TA+R+LDNVIDIN + +EKA+ SN HR +GLGLMGFQ Sbjct: 602 LVQHLKDGALDHDKLKKTITTAMRMLDNVIDINYYAVEKARHSNMRHRPVGLGLMGFQDC 661 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L+ L +PYAS AVE AD SME I +HA AS ELA+ERG Y S+KGSLWDQG+ P+D++ Sbjct: 662 LYELRVPYASQAAVEFADTSMEAICYHAYWASTELARERGQYESYKGSLWDQGILPLDTL 721 Query: 727 GLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +LA+ R + ++R++ L WD L++++ T GMRNSNC+AIAPTATI+NI GV I+P Sbjct: 722 DMLAKERGGYVEVDRSATLDWDALRQKIATDGMRNSNCVAIAPTATISNIIGVDACIEPC 781 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P+D+K ++ Sbjct: 782 FGNLSVKSNLSGEFTVINHYLVRDLKKLGLWDDVMVVDLKHFDGSLRPIDRVPNDIKALY 841 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ATAFEI+ WL+E+ SRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR+ Sbjct: 842 ATAFEIETSWLVEAGSRRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKTTYYLRT 901 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIPSSCTS 946 +SAT EKST++ GK+N+V + +T + I Sbjct: 902 QSATHAEKSTVQA--GKMNSVSSAPAAAMLGMSAIDKAAAAAQAQMSATPATDIKFCAID 959 Query: 947 DTECEVCQ 954 D CE CQ Sbjct: 960 DPGCEACQ 967 >gi|149927166|ref|ZP_01915423.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp. MED105] gi|149824105|gb|EDM83326.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp. MED105] Length = 969 Score = 983 bits (2541), Expect = 0.0, Method: Composition-based stats. Identities = 542/969 (55%), Positives = 696/969 (71%), Gaps = 41/969 (4%) Query: 14 AFPSLAYPF-PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 + P+ A P ++I+RNG V F+PSKI+ A+ KAF+AV G + S R+++++ Sbjct: 14 SKPAGAAPVVDSAYSNYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARIRELV 73 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 + +T V L++ S I HIEDIQDQVE +LM+SG ++ R YVLYRE R+ RAA+ Sbjct: 74 EQMTGSVVNALVRRQPSGGIFHIEDIQDQVELALMRSGEAEVARAYVLYRERRAQERAAK 133 Query: 133 SHSKSDAPIAPKLKIMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191 +++ + DG + + L+ ++E A GL ++ + ET KN+YD Sbjct: 134 QVEQAEQHALNVM-----DGDIKRPLDVEALKALIESAAVGLNEIDVAHLQKETLKNLYD 188 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 G+ ++ + I +SR +IE EP+Y VT+R LL +RRE++ ++ EM + Sbjct: 189 GVKIDEVFKSAILASRAMIENEPSYTLVTSRLLLHTIRREIIG------REIAQDEMAQV 242 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 YPEYF ++I++G+ A LL + FD+ L LKYERD F+YLGLQ LYDRYFLH+ G Sbjct: 243 YPEYFPQFIKKGIAAGLLDNRLAQFDMKKLGAALKYERDLQFDYLGLQTLYDRYFLHVEG 302 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 +RIEMPQAF+MRVAMGLAL E ++E RA+EFY +LS+F FM STPTLFNSGT QLSSC Sbjct: 303 TRIEMPQAFYMRVAMGLALNEVDREARAIEFYEVLSTFDFMSSTPTLFNSGTIRSQLSSC 362 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +LTT+ DDL I+ ++ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV Sbjct: 363 YLTTIGDDLDDIYEGIKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVV 422 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMK Sbjct: 423 NDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMK 482 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV + WTLFSP + DLHDLYGK FE AY YE +A RG++K+F+ + A LWRK+L+ Sbjct: 483 RVMEGGNWTLFSPSDCPDLHDLYGKAFEKAYVGYEEKAARGDLKLFKTVEAAKLWRKILS 542 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL H Sbjct: 543 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNENEIAVCNLGSVNLTRHL 602 Query: 612 ANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 D++KL T+ A+R+LDNVIDIN + + KA+ SN HR +G+G+MGFQ A Sbjct: 603 KPADNGELVLDHEKLQKTVGVAMRMLDNVIDINYYAVAKARNSNLRHRPVGMGMMGFQDA 662 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 LH++ PYAS +AVE ADESME I ++A AS ELA ERGAYS+FKGSLWD+G+ P+DS+ Sbjct: 663 LHMMRKPYASRDAVEFADESMEAICYYAYEASTELAAERGAYSTFKGSLWDKGIMPLDSL 722 Query: 727 GLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 LL E R + ++ +SR+ WD L+ R+K GMRNSNC+AIAPTATI+NI GV+ SI+P+ Sbjct: 723 KLLEEERGGYVEVDTSSRMDWDALRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPT 782 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 +QNLYVKSN+SG+FT+VN LV +LK+ +WDE MISDLKY DGS+ I+RIP+DLK+++ Sbjct: 783 FQNLYVKSNLSGEFTIVNEHLVRDLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLY 842 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ATAFE+DP WL+E+A+RRQKWIDQ QSLN+Y+ SGK+LD Y+ AW+ GLKTTYYLR+ Sbjct: 843 ATAFEMDPRWLVEAAARRQKWIDQGQSLNIYMAGVSGKRLDDTYKLAWIRGLKTTYYLRT 902 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSS--------------THSLGIPSSCTSDT--- 948 AT EKSTL G G+LN+V S+ CT Sbjct: 903 IGATHAEKSTLAG--GELNSVNAEGGASAAFTSAPATGLVPNLPEQEIEGKVCTMRPGDA 960 Query: 949 ---ECEVCQ 954 ECE CQ Sbjct: 961 GFDECEACQ 969 >gi|312795098|ref|YP_004028020.1| ribonucleoside-diphosphate reductase alpha chain [Burkholderia rhizoxinica HKI 454] gi|312166873|emb|CBW73876.1| Ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1) [Burkholderia rhizoxinica HKI 454] Length = 1046 Score = 983 bits (2540), Expect = 0.0, Method: Composition-based stats. Identities = 556/1002 (55%), Positives = 701/1002 (69%), Gaps = 58/1002 (5%) Query: 1 MHPSKDVNKGDEDAFPSL----------AYPFPEK-IKGVQVIKRNGGVTSFDPSKISRA 49 M +++V A L P+ + +VI+RNG V SF+PSKI+ A Sbjct: 55 MQTTENVTSQQPSAAAGLPHGGGAAHGARALAPQATLADYKVIRRNGSVVSFEPSKIAIA 114 Query: 50 IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109 + KAF+AV G + S RV++ ++ LT+ V L++ + HIEDIQDQVE +LM++ Sbjct: 115 VTKAFLAVNGGQGAASARVRESVETLTQAVVRALVRSRPNGGTFHIEDIQDQVELALMRA 174 Query: 110 GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169 G H + R YVLYRE+R+ RA H + P L + D+G + + L ++ A Sbjct: 175 GEHNVARAYVLYREKRAAERA---HEVAQQPAQGGLNV-NDNGIVRPLDLAALRNVITAA 230 Query: 170 CSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228 C GL + VS++ +++ET KN+YDG+ S + + I ++RT+IEKEP Y++VTAR LL + Sbjct: 231 CDGLGEAVSAEPIVAETVKNLYDGVPLSQVYDSAILAARTMIEKEPAYSQVTARLLLHTI 290 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 RRE+L ++ EM Y EYF ++++ GV+A LL E ++ FDL L + L Sbjct: 291 RREILG------EEVLQSEMGARYAEYFPQFLKRGVEAELLDEKLLQFDLKKLGDALDAS 344 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD F YLGLQ LYDRYFLH++G RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LS+ Sbjct: 345 RDLKFGYLGLQTLYDRYFLHVDGQRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLST 404 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F FM STPTLFNSGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR Sbjct: 405 FDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLEGIYEALKENALLSKFAGGLGNDWTRVR 464 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKN Sbjct: 465 ALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKN 524 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 TGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + Sbjct: 525 TGDDRRRTHDMNTANWIPDLFMKRVIEGGDWTLFSPSSCPDLHDKFGAEFEQAYVAYEEK 584 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 A RGE+K+F+KI A LWRKML MLFETGHPWITFKDPC +RSPQQHVGVVHSSNLCTEI Sbjct: 585 AARGELKLFKKIPAAQLWRKMLGMLFETGHPWITFKDPCXVRSPQQHVGVVHSSNLCTEI 644 Query: 589 TLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 TLN+S E AVCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + Sbjct: 645 TLNTSDNEIAVCNLGSVNLVAHMKQGADXGYVLDHDKLKRTISVAMRMLDNVIDINYYAV 704 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 KA+ SN HR +G+G+MGFQ LHLL PYAS +AVE AD SME I ++A AS ELA Sbjct: 705 AKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQQAVEFADRSMEAICYYAYWASTELAS 764 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG YSS++GSLWD+G+ P D++ LLA+ R + ++ + + W L++R+ T GMRNSN Sbjct: 765 ERGRYSSYRGSLWDRGILPQDTLKLLADSRGGYVEVDSSETMDWAALRERIATHGMRNSN 824 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 C+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++ Sbjct: 825 CVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKARGLWDEVMVA 884 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 DLKY DGS+ I+RIP DL++ +ATAFE+DP WL+E+A+RRQKWIDQAQSLN+Y+ SG Sbjct: 885 DLKYFDGSLARIDRIPADLRETYATAFEVDPKWLVEAAARRQKWIDQAQSLNIYMAGASG 944 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST------------------------LKG 918 KKLD IY+ AWL GLKTTYYLR+ +AT VEKST + G Sbjct: 945 KKLDEIYKLAWLRGLKTTYYLRTIAATHVEKSTVAHGALNAVPSSDGGVGAMHGAGGVSG 1004 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 NA ++ + C ECE CQ Sbjct: 1005 SATARNAGVHAAADAGSQDEIAGPVCMLRPGDAGFDECEACQ 1046 >gi|307731038|ref|YP_003908262.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia sp. CCGE1003] gi|307585573|gb|ADN58971.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1003] Length = 1000 Score = 982 bits (2538), Expect = 0.0, Method: Composition-based stats. Identities = 557/933 (59%), Positives = 693/933 (74%), Gaps = 25/933 (2%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 + +G++ P Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 18 QTFGQAQGNQALAPQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQG 71 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT+ V LL+ + HIEDIQDQVE +LM+ G H + R YVLYR Sbjct: 72 AASARVRELVEQLTQNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYR 131 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E+R+ RA H + A P L + D+G + L I+E AC+ L D VS++ + Sbjct: 132 EKRTQARA---HDEQAAGSTPGLSVT-DNGVTRPLDMAALRGIIESACANLGDAVSAEPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L + Sbjct: 188 VAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EE 241 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + T EM Y EYF ++I+ GV+A LL + ++ FDL L L RD F YLGLQ L Sbjct: 242 EVTQAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNS Sbjct: 302 YDRYFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNS 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS Sbjct: 362 GTRRSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKS 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI Sbjct: 482 ANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIP 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCN Sbjct: 542 AAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCN 601 Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR + Sbjct: 602 LGSVNLVAHLKEQADGTLALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPV 661 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G+MGFQ LHLL PYAS EAV+ AD SME + ++A AS ELA+ERG YSS++GSLW Sbjct: 662 GMGIMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAEERGRYSSYRGSLW 721 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D+G+ P DS+ LLAE R + ++ + + W EL++R+ T GMRNSNC+AIAPTATI+NI Sbjct: 722 DRGILPQDSVKLLAEARGGYVEVDSSESMDWSELRQRIATYGMRNSNCIAIAPTATISNI 781 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+ Sbjct: 782 IGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRID 841 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ Sbjct: 842 RIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVR 901 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 GLKTTYYLR+ +AT VEKST+ G LNAV Sbjct: 902 GLKTTYYLRTMAATHVEKSTV--AHGALNAVSS 932 >gi|53720600|ref|YP_109586.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei K96243] gi|53726101|ref|YP_104056.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei ATCC 23344] gi|67643594|ref|ZP_00442339.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Burkholderia mallei GB8 horse 4] gi|76810342|ref|YP_334882.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 1710b] gi|121601276|ref|YP_991781.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei SAVP1] gi|124384186|ref|YP_001027274.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei NCTC 10229] gi|126439753|ref|YP_001060485.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 668] gi|126448585|ref|YP_001082789.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia mallei NCTC 10247] gi|126454560|ref|YP_001067749.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 1106a] gi|134280283|ref|ZP_01766994.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 305] gi|166998594|ref|ZP_02264452.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei PRL-20] gi|167825889|ref|ZP_02457360.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 9] gi|217420768|ref|ZP_03452273.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 576] gi|226196789|ref|ZP_03792368.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|237813880|ref|YP_002898331.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Burkholderia pseudomallei MSHR346] gi|242315545|ref|ZP_04814561.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1106b] gi|254178878|ref|ZP_04885532.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei ATCC 10399] gi|254180585|ref|ZP_04887183.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1655] gi|254190978|ref|ZP_04897484.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|254199123|ref|ZP_04905538.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei S13] gi|254202775|ref|ZP_04909138.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei FMH] gi|254208117|ref|ZP_04914467.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei JHU] gi|254257988|ref|ZP_04949042.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1710a] gi|254299328|ref|ZP_04966778.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 406e] gi|52211014|emb|CAH37002.1| putative ribonucleoside reductase [Burkholderia pseudomallei K96243] gi|52429524|gb|AAU50117.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei ATCC 23344] gi|76579795|gb|ABA49270.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1710b] gi|121230086|gb|ABM52604.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei SAVP1] gi|124292206|gb|ABN01475.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei NCTC 10229] gi|126219246|gb|ABN82752.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 668] gi|126228202|gb|ABN91742.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1106a] gi|126241455|gb|ABO04548.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei NCTC 10247] gi|134248290|gb|EBA48373.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 305] gi|147747022|gb|EDK54099.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei FMH] gi|147752011|gb|EDK59078.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei JHU] gi|157809187|gb|EDO86357.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 406e] gi|157938652|gb|EDO94322.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|160694792|gb|EDP84800.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei ATCC 10399] gi|169656953|gb|EDS88350.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei S13] gi|184211124|gb|EDU08167.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1655] gi|217396180|gb|EEC36197.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 576] gi|225931049|gb|EEH27057.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|237505593|gb|ACQ97911.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Burkholderia pseudomallei MSHR346] gi|238524966|gb|EEP88396.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Burkholderia mallei GB8 horse 4] gi|242138784|gb|EES25186.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1106b] gi|243065277|gb|EES47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia mallei PRL-20] gi|254216677|gb|EET06061.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia pseudomallei 1710a] Length = 995 Score = 982 bits (2537), Expect = 0.0, Method: Composition-based stats. Identities = 557/994 (56%), Positives = 701/994 (70%), Gaps = 56/994 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A ++A A + + D+G + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN--------------------- 932 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTSGGAAGGAQGAAGGFGAAGGD 961 Query: 933 ------SSTHSLGIPSSCTSDT------ECEVCQ 954 ++ CT ECE CQ Sbjct: 962 APSGAMNAAPVEADGPVCTMRPGDPGFEECEACQ 995 >gi|319791702|ref|YP_004153342.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax paradoxus EPS] gi|315594165|gb|ADU35231.1| ribonucleoside-diphosphate reductase, alpha subunit [Variovorax paradoxus EPS] Length = 971 Score = 981 bits (2536), Expect = 0.0, Method: Composition-based stats. Identities = 540/972 (55%), Positives = 701/972 (72%), Gaps = 35/972 (3%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 PS V + + + P + + Q+I+RNG V F+P+KI+ A+MKAF+AV G Sbjct: 15 PSTPVQQQRD----TAGSPTGQNLAHYQIIRRNGAVVPFEPNKIAIAMMKAFLAVHGTQG 70 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S V++ + LT+ + +++ HIED+QDQVE LM+ GHH+I R YVLYR Sbjct: 71 AASASVRETVDVLTQGVIRAMVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYR 130 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E R+ R+ + +AP P L ++ D+G ++ + +L+ ++E AC L D +++ + Sbjct: 131 ERRTQERS--KQVEQEAPATPTLHVL-DNGERVALDLNQLKGLIESACENLGDSITAAPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR LL + +E++ Sbjct: 188 VAETMRNLYDGVPLDEVYKASILAARTLIEKDPDYTFATARLLLHTIFKEIIGREVMPVD 247 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 +AT Y +YF ++I++GV+ LL E ++ +DL L LK ERD F+YLGLQ L Sbjct: 248 RAT------AYADYFPQFIKKGVENDLLDEKLLQYDLPRLGAALKAERDNQFDYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLH+ +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFN+ Sbjct: 302 YDRYFLHVRKTRIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNA 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+S Sbjct: 362 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGES 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFM+RV + WTLFSP V DLHDL+G +FE AY YE +A RGEIK R I Sbjct: 482 ANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGADFEKAYVAYEEKAARGEIKPARTIQ 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVCN Sbjct: 542 ASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCN 601 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+NLL H + + D +KL TI TA+R+LDNVIDIN + ++KA+ SN HR +GLGLM Sbjct: 602 LGSVNLLQHLKDGKVDQEKLKRTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLM 661 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ AL+ L IPYAS EAV+ ADESME I +HA AS ELA+ERG YSS+KGSLWD+G+ Sbjct: 662 GFQDALYELRIPYASQEAVQFADESMEAICYHAYWASTELAKERGKYSSYKGSLWDKGIL 721 Query: 722 PIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 PID++ LL + R + ++R++ L WD L+ ++K GMRNSNC+AIAPTATI+NI GV Sbjct: 722 PIDTLDLLEQARGGYVEVDRSATLDWDALRAKIKADGMRNSNCVAIAPTATISNIIGVDA 781 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI+P + NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P D Sbjct: 782 SIEPCFGNLSVKSNLSGEFTVINHYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQD 841 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 +K ++ATAFE++ WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTT Sbjct: 842 VKALYATAFEVETTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTT 901 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST------------------HSLGIPS 942 YYLR++SAT EKST++ G+LNAV + S + I Sbjct: 902 YYLRTQSATHAEKSTVQ--SGRLNAVSSGNDAPSGMSALEAAAAAAKAQMSAMPATDIAF 959 Query: 943 SCTSDTECEVCQ 954 D CE CQ Sbjct: 960 CGVDDPTCEACQ 971 >gi|332530700|ref|ZP_08406631.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella gracilis ATCC 19624] gi|332039868|gb|EGI76263.1| ribonucleotide-diphosphate reductase subunit alpha [Hylemonella gracilis ATCC 19624] Length = 988 Score = 981 bits (2536), Expect = 0.0, Method: Composition-based stats. Identities = 528/985 (53%), Positives = 685/985 (69%), Gaps = 45/985 (4%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 + A + Q+I+RNG V F+PSKI+ A+MKAF+AV G + Sbjct: 15 ATTTLPQGASMTHGAALGANSALAHYQIIRRNGAVVPFEPSKIAVALMKAFLAVHGAQGA 74 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S V++ + LT+ V L + HIED+QDQVE LM+ GHH++ R YVLYR Sbjct: 75 ASASVRETVDGLTQAVVRALTRSRPGGGTFHIEDVQDQVELGLMRGGHHEVARAYVLYRA 134 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVL 182 +R++ R H+ AP P L + D+G ++ + RL+ ++E AC+ L DV + ++ Sbjct: 135 KRAEER--AQHAAQAAPQTPVLHVT-DNGQRVALDLNRLQRLIESACANLSADVKADPIV 191 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 +ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR L + +EVL + Sbjct: 192 AETLRNLYDGVPLEEVYKAAILAARTLIEKDPDYTYATARLLFHTIAKEVLG------RD 245 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 EM+ Y +YF +I++GV A LL+ ++ +DL L LK ERD F+YLGLQ LY Sbjct: 246 VQPSEMKQAYADYFPGFIKKGVDAELLNPELLQYDLKRLGAALKSERDQQFDYLGLQTLY 305 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 DRYFLH+ +RIE+PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSG Sbjct: 306 DRYFLHVKKTRIELPQAFFMRVAMGLALNEIDREARAIEFYEVLSSFDFMSSTPTLFNSG 365 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 T QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQ Sbjct: 366 TLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQ 425 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTA Sbjct: 426 GVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTA 485 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 NWIPDLFM+RV + WTLFSP + DLHDL+G FE AY YE +A RGE+K + + A Sbjct: 486 NWIPDLFMRRVMEKGEWTLFSPSDAPDLHDLFGSAFEKAYVAYEAKAKRGELKPSKTVPA 545 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 + LWRKML+MLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNL Sbjct: 546 IDLWRKMLSMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNL 605 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL H + + D++KL TI TA+R+LDNVIDIN + ++KA+ SN HR +GLG+M Sbjct: 606 GSVNLKQHITDGKLDHEKLKKTISTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMA 665 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 FQ AL+ + IPYAS AV+ ADESME I ++A AS ELA+ERG YSS++GSLW +G+ P Sbjct: 666 FQDALYEMRIPYASDAAVQFADESMEAICYYAYWASTELARERGVYSSYQGSLWSKGILP 725 Query: 723 IDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D++ LLA R + ++R++ L W+ L+K++ GMRNSNC+AIAPTATI+NI GV S Sbjct: 726 PDTLELLARERGGYVEVDRSATLDWELLRKKIAADGMRNSNCVAIAPTATISNIIGVDAS 785 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P + NL VKSN+SG+FT++N +LV +LK+ LWDE M+ DLK+ DGS+ I+R+P D+ Sbjct: 786 IEPCFGNLSVKSNLSGEFTIINGYLVKDLKRLGLWDEVMVMDLKHFDGSLLPIDRVPQDI 845 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K ++ATAFE++P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW GLKTTY Sbjct: 846 KALYATAFEVEPSWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKTTY 905 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS------------------------ 937 YLR+ SAT EKST+ G+LNAV + + Sbjct: 906 YLRTTSATQAEKSTV--AAGRLNAVSSGSSETGAAAMAPVTSKPASAKKVSALEAAAAAA 963 Query: 938 --------LGIPSSCTSDTECEVCQ 954 I D CE CQ Sbjct: 964 QTQMAVAATDIKFCAIDDPGCEACQ 988 >gi|120609558|ref|YP_969236.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax citrulli AAC00-1] gi|120588022|gb|ABM31462.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax citrulli AAC00-1] Length = 983 Score = 981 bits (2535), Expect = 0.0, Method: Composition-based stats. Identities = 534/988 (54%), Positives = 682/988 (69%), Gaps = 43/988 (4%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPE--KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58 + PS D+ P + Q+I+RNG V F+P KI+ A+MKAF+AV Sbjct: 5 LSPSSATTAPDQTPTAQGTEPAAGGHPLSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVH 64 Query: 59 GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118 G + S V++ + LT+ V L++ HIED+QD VE SLM+ GHH++ R Y Sbjct: 65 GTQGAASASVRETVDTLTQSVVRALMRSRPGGGTFHIEDVQDNVELSLMRGGHHEVARAY 124 Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVS 177 VLYRE R+ RA Q H + P P L ++ D+G + + RL +++ AC+ L DV Sbjct: 125 VLYRERRTQERAHQQHDRQPVPSTPVLHVI-DNGQRVPLDEARLRGLIDSACANLGADVH 183 Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237 + +++ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR LL + REVL Sbjct: 184 AAPIVAETLRNLYDGVPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQ-- 241 Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297 +M Y YF ++I++GV LL ++ +DLV L L RD F+YLG Sbjct: 242 ----DVVPADMGPAYAAYFPQFIQKGVDNELLDPRLLQYDLVRLGAALDAGRDQQFDYLG 297 Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 LQ LYDRYFLH+ +RIE+PQ FFMRVAMGLAL E ++E RA+EFY +LSSF FM STPT Sbjct: 298 LQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDREARAIEFYEVLSSFDFMSSTPT 357 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 LFNSGT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GT Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 DMNTANWIPDLFM+RV + WTLFSP V DLHDL+G +FE AY YE +A RGEIK Sbjct: 478 DMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFGADFEKAYVAYEEKAARGEIKPS 537 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 R + A LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ET Sbjct: 538 RTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDAET 597 Query: 598 AVCNLGSINLLAHFANNQF----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 AVCNLGS+NL+ H + D+ KL TI TA+R+LDNVIDIN + +EKA+ SN H Sbjct: 598 AVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRMLDNVIDINYYAVEKARNSNMRH 657 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +GLGLM FQ +L+ L IPYAS AVE AD SME I ++A AS ELAQERG YSS+ G Sbjct: 658 RPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAICYYAYWASTELAQERGKYSSYPG 717 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ PID++ LL + R + ++R + L WD L++++ GMRNSNC+AIAPTATI Sbjct: 718 SLWDRGILPIDTLDLLEKARGGYVEVDRAATLDWDALRQKIARDGMRNSNCVAIAPTATI 777 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GV SI+PS+ NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ GS+ Sbjct: 778 SNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRDLKRLGLWDDVMVMDLKHFKGSLH 837 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+R+P D+K +++TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ A Sbjct: 838 PIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDETYKLA 897 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--------------- 937 W+ GLKTTYYLR++SAT VE ST+ +LNAV ++ + Sbjct: 898 WVRGLKTTYYLRTQSATHVEMSTVNTR--QLNAVSSGSDSAMQAAGTGAARPSALDAAAA 955 Query: 938 -----------LGIPSSCTSDTECEVCQ 954 + D CE CQ Sbjct: 956 AAQSQAAALPATDVKFCAIDDPTCEACQ 983 >gi|309783063|ref|ZP_07677782.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp. 5_7_47FAA] gi|308918171|gb|EFP63849.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia sp. 5_7_47FAA] Length = 994 Score = 981 bits (2535), Expect = 0.0, Method: Composition-based stats. Identities = 563/993 (56%), Positives = 694/993 (69%), Gaps = 52/993 (5%) Query: 2 HPSK-DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 +PS+ + G P A + ++I+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 14 NPSQFAQSAGGTAVAPGTASGV--NLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 + S RV++++ T+ V LL+ + HIED+QDQVE +LM+SG H + R YVL Sbjct: 72 QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 YRE R+ RA + P L + D G + L ++ AC GL + V + Sbjct: 132 YRERRAQERAQAGET-QQQPAFIGLNVT-DGGISRPLDMAALRNVIVSACEGLGEAVDPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +L ET KN+Y+G+ + + + I +SRTLIEK+P Y++VTAR LL +RRE+L Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y +YF ++IE G+ A LL + + FDL L L RDF F YLGLQ Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIERGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLHIN +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF Sbjct: 304 TLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD GK FE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AV Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH D++KL T+RTA+R+LDNVIDIN + ++KA+ SN HR Sbjct: 604 CNLGSVNLVAHLVKQPDGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +G+G+MGFQ ALH+L +PYAS AV+ AD SME + ++A AS ELA+ERG YSS+KGS Sbjct: 664 PVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P DS+ LLAE R L + +S + WD L+ R+K GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW Sbjct: 844 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH----------------- 936 L GLKTTYYLR+ AT VEKST+ G LNAV Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDVGGVSAAGASGVTSAAPTSALD 961 Query: 937 ---------SLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994 >gi|241664220|ref|YP_002982580.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia pickettii 12D] gi|240866247|gb|ACS63908.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12D] Length = 994 Score = 980 bits (2534), Expect = 0.0, Method: Composition-based stats. Identities = 563/993 (56%), Positives = 694/993 (69%), Gaps = 52/993 (5%) Query: 2 HPSK-DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 +PS+ + G P A + ++I+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 14 NPSQFAQSAGGTAVAPGTASGV--NLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 + S RV++++ T+ V LL+ + HIED+QDQVE +LM+SG H + R YVL Sbjct: 72 QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 YRE R+ RA + P L + D G + L ++ AC GL D V + Sbjct: 132 YRERRAQERAQAGET-QQQPAFIGLNVT-DGGISRPLDMVALRNVIVSACEGLGDAVDPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +L ET KN+Y+G+ + + + I +SRTLIEK+P Y++VTAR LL +RRE+L Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y +YF ++I+ G+ A LL + + FDL L L RDF F YLGLQ Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLHIN +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF Sbjct: 304 TLYDRYFLHINETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD GK FE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AV Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH D++KL T+RTA+R+LDNVIDIN + ++KA+ SN HR Sbjct: 604 CNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +G+G+MGFQ ALH+L +PYAS AV+ AD SME + ++A AS ELA+ERG YSS+KGS Sbjct: 664 PVGMGIMGFQDALHVLRVPYASEAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P DS+ LLAE R L + +S + WD L+ R+K GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW Sbjct: 844 IDRIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH----------------- 936 L GLKTTYYLR+ AT VEKST+ G LNAV Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDVGGVSAAGASGVTSAAPTSALD 961 Query: 937 ---------SLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994 >gi|113869189|ref|YP_727678.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia eutropha H16] gi|113527965|emb|CAJ94310.1| Ribonucleoside-diphosphate reductase alpha subunit [Ralstonia eutropha H16] Length = 977 Score = 980 bits (2534), Expect = 0.0, Method: Composition-based stats. Identities = 556/977 (56%), Positives = 700/977 (71%), Gaps = 36/977 (3%) Query: 6 DVNKGDEDAFPSLAYPFPEKI----KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P+ ++I+RNG V +F+PSKI+ A+ KAF+AV G Sbjct: 9 TTGGAAAGIAPTAQQTPANAANTNYPDHKIIRRNGAVVAFEPSKIAVAMTKAFLAVNGGQ 68 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++I++ LT+ V L++ + +HIED+QD VE +LM+SG H++ R YVLY Sbjct: 69 GAASARVREIVEQLTDNVVRALVRSRPNGGAIHIEDVQDHVELALMRSGEHEVARAYVLY 128 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R D RA + + + + DG + L +++ ACSGL + VS++ Sbjct: 129 REKRKDERAQANAQAVARVQEGGISVNVTDGGVTHVLDIAALHDLIDNACSGLGNAVSAE 188 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +L ET KN+YDG+ + + + I ++RTLIEK+P+Y++VTAR LL +R+E+L T Sbjct: 189 PILKETLKNLYDGVPMTQVYDSAILAARTLIEKDPDYSQVTARILLHTIRKEILGT---- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 + T EM Y EYF ++I G++A LL E + FDL L L RDF F YLGLQ Sbjct: 245 --EVTQAEMSTRYAEYFPKFIARGIEAELLDEQLATFDLARLGAALDAGRDFQFNYLGLQ 302 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF Sbjct: 303 TLYDRYFLHIDETRIEMPQAFFMRVAMGLALNEKDREARAIEFYQLLSSFDFMSSTPTLF 362 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 363 NSGTRRSQLSSCYLTTVSDDLEGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 422 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 423 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 482 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD GKEFE AY YE +A GE+K+F+K Sbjct: 483 NTANWIPDLFMKRVMEGGEWTLFSPATCPDLHDKVGKEFEKAYLGYEAKAASGELKLFKK 542 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AV Sbjct: 543 LPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAV 602 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D+ KL T+RTA+R+LDNVIDIN + ++KA+ SN HR Sbjct: 603 CNLGSVNLVAHMAKQADGTYALDHAKLQKTVRTAMRMLDNVIDINYYAVDKARNSNLRHR 662 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +G+G+MGFQ LH+L PY+S AV+ AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 663 PVGMGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYHASTELAEERGRYSSYEGS 722 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P DS+ LLAE R L ++ ++ + WD L+ R+K GMRNSNC+AIAPTATI+ Sbjct: 723 LWDRGILPQDSLKLLAEERGGYLDVDMSATMDWDALRARIKQHGMRNSNCIAIAPTATIS 782 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DGS+ Sbjct: 783 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSR 842 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW Sbjct: 843 IDRIPQDLRDIYATAFEVEPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 902 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS----------THSLGIPSS 943 + GLKTTYYLR+ +AT VEKST+ G LNAV + S + Sbjct: 903 VRGLKTTYYLRTMAATHVEKSTVSR--GSLNAVSSGSDSGSALDAAAASAPAMPEAEGAV 960 Query: 944 CTSDT------ECEVCQ 954 CT ECE CQ Sbjct: 961 CTMRPGDPGFEECEACQ 977 >gi|171057073|ref|YP_001789422.1| ribonucleotide-diphosphate reductase subunit alpha [Leptothrix cholodnii SP-6] gi|170774518|gb|ACB32657.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptothrix cholodnii SP-6] Length = 958 Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats. Identities = 543/945 (57%), Positives = 685/945 (72%), Gaps = 18/945 (1%) Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78 A G Q+I+RNG V +F+P KI+ A+MKAF+AV G + S V++ + LTE Sbjct: 23 AAANASAYVGYQIIRRNGAVVAFEPHKITVALMKAFLAVHGTHGAASASVRETVDGLTEA 82 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 V L++ S HIEDIQDQVE LM+ GHH + R YVLYRE R+ RA+Q + Sbjct: 83 VVRALMRSRPSGGSFHIEDIQDQVELGLMRGGHHDVARAYVLYRERRTQERASQGR--AP 140 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESD 197 P + + G + + RL ++E AC+ L + VL+ET +N+YDG+S + Sbjct: 141 VAAEPAVMVTDR-GQRVPLDMARLAGLIEAACADLGPEAIGAPVLAETRRNLYDGVSIDE 199 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + A I ++RTLIEK+P+Y++VTAR L+ +RR+VL ++ T EM Y +YF Sbjct: 200 VYKASILAARTLIEKDPSYSRVTARLLMHTIRRDVLG------EEVTQAEMAARYADYFP 253 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 +I++GV A LL E M FDL L LK ERD F+YLGLQ LYDRYFLHI RIEMP Sbjct: 254 AFIKKGVDAELLDERMAQFDLARLGAALKAERDLNFDYLGLQTLYDRYFLHIRKQRIEMP 313 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 QAFFMRVAMGLAL E ++E RA+EFY +LS+F FM STPTLFN+GTR QLSSC+LTTVP Sbjct: 314 QAFFMRVAMGLALNEIDREARAIEFYEVLSAFDFMSSTPTLFNAGTRRSQLSSCYLTTVP 373 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DDL GI+ A+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAVA Sbjct: 374 DDLEGIYDAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVA 433 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + Sbjct: 434 VNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGG 493 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTLFSP DLHDL+G FE AY YE +ADRGEI F+++ AV LWRK+L+MLFETG Sbjct: 494 DWTLFSPANCPDLHDLFGTAFEAAYTAYEARADRGEITFFKRVRAVDLWRKILSMLFETG 553 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 HPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN+++ E AVCNLGS+NL H + + D Sbjct: 554 HPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNAGEIAVCNLGSVNLAQHVKDGEVD 613 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 KL T+ TA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ AL+ L +PYAS Sbjct: 614 QAKLCRTVTTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRVPYASN 673 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DEL 736 EAVE AD SME + +HA AS ELA ERG Y++++GSLWD+G+ PIDSI LLAE R L Sbjct: 674 EAVEFADRSMEAVCYHAYWASTELAAERGRYATYRGSLWDRGILPIDSIALLAEQRGGYL 733 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++ + L WD L+ R+ GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+S Sbjct: 734 DVDTRTTLDWDALRARIAQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLS 793 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FTVVN +LV +LK LWD+ M+ DLK+ DGS+ I+R+P++LK+++ATAFE++ WL Sbjct: 794 GEFTVVNEYLVRDLKALGLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWL 853 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 +E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT EKST+ Sbjct: 854 VEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMGATHAEKSTV 913 Query: 917 KG-------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 K +A +S+ + + D CE CQ Sbjct: 914 KAGSMNAVSNGAHGSASEPAAVSSNEPATDVKFCAIDDPSCEACQ 958 >gi|170699975|ref|ZP_02891002.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria IOP40-10] gi|170135123|gb|EDT03424.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria IOP40-10] Length = 999 Score = 980 bits (2533), Expect = 0.0, Method: Composition-based stats. Identities = 550/997 (55%), Positives = 686/997 (68%), Gaps = 58/997 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 RE+R R + A ++D+G + L ++ AC+GL V+ + Sbjct: 131 REKRHLERQHAGEEAAAGGEASAGINVVDNGVTRPLDMNALRELIVSACAGLGAAVNPEP 190 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 191 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 244 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ EM Y EYF ++++ GV A LL + ++ FDL L L RD F YLGLQ Sbjct: 245 EEVLQAEMSTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGLQT 304 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFN Sbjct: 305 LYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTLFN 364 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK Sbjct: 365 SGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 424 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 425 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 484 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI Sbjct: 485 TANWIPDLFMKRVMEGTDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKI 544 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVC Sbjct: 545 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAVC 604 Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR Sbjct: 605 NLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKHRP 664 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GSL Sbjct: 665 VGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSL 724 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ LL E R + ++ + L W L+ R+ GMRNSNC+AIAPTATI+N Sbjct: 725 WDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATISN 784 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + I Sbjct: 785 IIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 844 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL Sbjct: 845 DRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAWL 904 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV-------------------------- 928 GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 905 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGGSSSGGAQGAAGGFGAAGGDA 962 Query: 929 -----TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 963 SSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999 >gi|300309721|ref|YP_003773813.1| ribonucleoside reductase large subunit [Herbaspirillum seropedicae SmR1] gi|300072506|gb|ADJ61905.1| ribonucleoside reductase (large chain) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 994 Score = 980 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 551/980 (56%), Positives = 695/980 (70%), Gaps = 47/980 (4%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 A + ++I+RNG V F+PSKIS A+ KAF+AV G + S RV++++ Sbjct: 24 SAESQAVASQTAGLGEYRIIRRNGAVVGFEPSKISIAVTKAFLAVNGGQGAASARVREMV 83 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 + LT V+ L++ + HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q Sbjct: 84 EQLTTNVVSALVRRQPTGGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERAQQ 143 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYD 191 + +AP+L + +DG + + ++ AC GL++ V + +L+ET KN+YD Sbjct: 144 GAATKTEVVAPQLHVT-EDGQSRPLDINEVRSLIAAACVGLEEHVDGEAILAETVKNLYD 202 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 G+ +L + I ++R L+EK+P Y++VT+R L+ +R+EV ++ + Sbjct: 203 GVPVEELYKSAILAARALMEKDPAYSQVTSRLLMHTIRKEVFG------KEVAQADAPAE 256 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 Y EYF +Y+++G++A LL + FDL LA LK ERD F Y+GLQ LYDRYFLHI G Sbjct: 257 YLEYFPQYVKKGIEAELLDTKLAQFDLAKLAAALKPERDLQFGYIGLQTLYDRYFLHIGG 316 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 +RIEMPQAF+MRVAMGLAL E ++E RA+EFY+LLSSF FM STPTLFNSGT+ QLSSC Sbjct: 317 TRIEMPQAFYMRVAMGLALNEIDRETRAIEFYDLLSSFDFMSSTPTLFNSGTQRSQLSSC 376 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +LTTV DDL GI+ A++ENA+LAK++GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV Sbjct: 377 YLTTVADDLDGIYEAIKENALLAKFAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVV 436 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMK Sbjct: 437 NDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMK 496 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV + WTLFSP + DLHD +G+ FE AY YE +A RGE+K+F+K+ A LWRKML+ Sbjct: 497 RVMEKGEWTLFSPSDTPDLHDKFGRAFEEAYTAYEAKAARGELKLFKKVQANDLWRKMLS 556 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL AH Sbjct: 557 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLPAHL 616 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N + D+ KL TIRTA+R+LDNVIDIN + ++KA+ SN HR +G+G+MGFQ LH+ Sbjct: 617 VNGELDHAKLQKTIRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGMGIMGFQDCLHIKR 676 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PYAS +AVE AD SME + ++A AS ELA+ERG Y+S++GSLWD+G+ P DS+ LLA+ Sbjct: 677 VPYASMDAVEFADRSMEAVCYYAYMASTELAEERGRYASYRGSLWDRGILPQDSLKLLAQ 736 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R L + T L W L+ R+ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLY Sbjct: 737 ERGGYLETDSTETLDWAALRARIAEHGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLY 796 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FT +N +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE Sbjct: 797 VKSNLSGEFTEINEYLVRDLKARGLWDEVMVADLKYFDGSLAKIDRIPQDLRDIYATAFE 856 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DP WL+E+ASRRQKWIDQAQSLN+Y+ SGK+LD Y+ AWL GLKTTYYLR+ AT Sbjct: 857 VDPSWLVEAASRRQKWIDQAQSLNIYMAGASGKRLDETYKLAWLRGLKTTYYLRTIGATH 916 Query: 911 VEKSTLKGVDGKLNAVPVTD------------------------------PNSSTHSLGI 940 EKST + G LNAV V PN Sbjct: 917 TEKSTSRA--GALNAVAVDGGAGAMASASGTAVPAAPIASAATASAAYVMPNPGAAIEAD 974 Query: 941 PSSCTSDT------ECEVCQ 954 CT ECE CQ Sbjct: 975 GPVCTMRPGDAGFEECEACQ 994 >gi|209521090|ref|ZP_03269820.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. H160] gi|209498473|gb|EDZ98598.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. H160] Length = 1003 Score = 980 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 560/1000 (56%), Positives = 696/1000 (69%), Gaps = 68/1000 (6%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 ++G + P +Y +VI+RNG V SF+PSKI+ A+ KAF+AV G + S Sbjct: 21 GQSQGAQGLAPQASY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 75 ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 + RA H ++A P L + D+G + L I+E AC+ L D VS++ +++E Sbjct: 135 NQARAHDEH--AEAASTPGLNVT-DNGITRPLDMAALRSIIESACANLGDAVSAEPIVAE 191 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ T Sbjct: 192 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 EM Y EYF ++I+ G+ A LL + + FDL L L RD F YLGLQ LYDR Sbjct: 246 QAEMGERYAEYFPQFIKRGIGAGLLDDKLQQFDLKRLGAALDANRDLQFGYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGT Sbjct: 306 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNILSSFDFMSSTPTLFNSGTH 365 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV Sbjct: 366 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 425 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 485 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+K+ A Sbjct: 486 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKLPAAQ 545 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS Sbjct: 546 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 605 Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR +GLG Sbjct: 606 VNLVAHLKEQADGTLALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLG 665 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ LH+L PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GSLWD+G Sbjct: 666 IMGFQDCLHMLRTPYASQEAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRG 725 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P DS+ LLAE R + ++ + + W L+ R+ T GMRNSNC+AIAPTATI+NI GV Sbjct: 726 ILPQDSVALLAEARGGYVEVDSSESMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGV 785 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+RIP Sbjct: 786 SACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 845 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I+ATAFE+DP+WL+ESASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AWL GLK Sbjct: 846 ADLRAIYATAFEVDPVWLVESASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLK 905 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP--------------------------- 931 TTYYLR+ +AT VEKST+ G LNAV Sbjct: 906 TTYYLRTMAATHVEKSTV--AHGALNAVSSGHDGSGGAGGAAGGFGVGGGAAGGLGGGFQ 963 Query: 932 -----------NSSTHSLGIPSSCTSDT------ECEVCQ 954 C ECE CQ Sbjct: 964 AAAAAAPTAAVAVEAAPEADGPVCMMRPGDPGFDECEACQ 1003 >gi|326315614|ref|YP_004233286.1| ribonucleoside-diphosphate reductase subunit alpha [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372450|gb|ADX44719.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 983 Score = 980 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 534/988 (54%), Positives = 681/988 (68%), Gaps = 43/988 (4%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPE--KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58 + PS D+ P + Q+I+RNG V F+P KI+ A+MKAF+AV Sbjct: 5 LSPSSATTAPDQTPTAQGTEPAAGGHPLSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVH 64 Query: 59 GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118 G + S V++ + LT+ V L++ HIED+QD VE SLM+ GHH++ R Y Sbjct: 65 GTQGAASASVRETVDTLTQSVVRALMRSRPGGGTFHIEDVQDNVELSLMRGGHHEVARAY 124 Query: 119 VLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVS 177 VLYRE R+ RA Q H + P P L ++ D+G + + RL +++ AC+ L QDV Sbjct: 125 VLYRERRTQERAHQQHDRQPVPSTPVLHVI-DNGQRVPLDEARLRGLIDSACANLGQDVH 183 Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237 + +++ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR LL + REVL Sbjct: 184 AAPIVAETLRNLYDGVPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQ-- 241 Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297 +M Y YF ++I++GV LL ++ +DL L L RD F+YLG Sbjct: 242 ----DVVPADMGPAYAAYFPQFIQKGVDNELLDPRLLQYDLARLGAALDAGRDQQFDYLG 297 Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 LQ LYDRYFLH+ +RIE+PQ FFMRVAMGLAL E ++E RA+EFY +LSSF FM STPT Sbjct: 298 LQTLYDRYFLHVRKTRIELPQCFFMRVAMGLALNEPDREARAIEFYEVLSSFDFMSSTPT 357 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 LFNSGT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GT Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 DMNTANWIPDLFM+RV + WTLFSP V DLHDL+G +FE AY YE +A RGEIK Sbjct: 478 DMNTANWIPDLFMRRVMEKGTWTLFSPSSVPDLHDLFGADFEKAYVAYEEKAARGEIKPS 537 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 R + A LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ET Sbjct: 538 RTLQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDAET 597 Query: 598 AVCNLGSINLLAHFANNQF----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 AVCNLGS+NL+ H + D+ KL TI TA+R+LDNVIDIN + +EKA+ SN H Sbjct: 598 AVCNLGSVNLVRHLKDGPNGKELDHAKLRKTISTAMRMLDNVIDINYYAVEKARNSNMRH 657 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +GLGLM FQ +L+ L IPYAS AVE AD SME I ++A AS ELAQERG YSS+ G Sbjct: 658 RPVGLGLMAFQDSLYELRIPYASQAAVEFADRSMEAICYYAYWASTELAQERGKYSSYPG 717 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ PID++ LL + R + ++R + L WD L++++ GMRNSNC+AIAPTATI Sbjct: 718 SLWDRGILPIDTLDLLEKARGGYVEVDRATSLDWDALRQKIARDGMRNSNCVAIAPTATI 777 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GV SI+PS+ NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ GS+ Sbjct: 778 SNIVGVDASIEPSFGNLSVKSNLSGEFTVINGYLVRDLKRLGLWDDVMVMDLKHFKGSLH 837 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+R+P D+K +++TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ A Sbjct: 838 PIDRVPQDVKALYSTAFEVAPTWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDETYKLA 897 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--------------- 937 W+ GLKTTYYLR++SAT VE ST+ +LNAV + + Sbjct: 898 WVRGLKTTYYLRTQSATHVEMSTVNTR--QLNAVSSGSDGAMQAAGSGTARPGALDAAAA 955 Query: 938 -----------LGIPSSCTSDTECEVCQ 954 + D CE CQ Sbjct: 956 AAQSQAAALPATDVKFCAIDDPTCEACQ 983 >gi|330815477|ref|YP_004359182.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia gladioli BSR3] gi|327367870|gb|AEA59226.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia gladioli BSR3] Length = 993 Score = 980 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 553/992 (55%), Positives = 691/992 (69%), Gaps = 54/992 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P ++G P + +VI+RNG V +F+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGTASQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V LL+ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 RE+R RA + L + G + K L +V AC GL V+ Sbjct: 131 REKRHLERAHSDAPVETPDGSSGLTVTDK-GVSRPLDMKALHGLVAAACEGLGSAVNPDP 189 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 IVAETVKNLYDGVPLSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ EMQ Y EYF ++++ GV+A LL + ++ FDLV L L RD F YLGLQ Sbjct: 244 EEVAQGEMQARYAEYFPQFLKRGVEAELLDDKLLQFDLVRLGEALDASRDLQFGYLGLQT 303 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH+ G+RIEMPQAF+MRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLFN Sbjct: 304 LYDRYFLHVEGTRIEMPQAFYMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLFN 363 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK Sbjct: 364 SGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMN 483 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGE+K+F+KI Sbjct: 484 TANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYLGYEEKVARGELKLFKKI 543 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVC Sbjct: 544 PAAQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDSEIAVC 603 Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL+AH A D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 NLGSVNLVAHLAKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 663 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG+MGFQ LHLL P++S AVE AD SME + ++A AS ELA+ERG YSS+ GSL Sbjct: 664 VGLGIMGFQDCLHLLRTPFSSDTAVEFADRSMEAVCYYAYWASTELAEERGRYSSYTGSL 723 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ LL E R + ++ + L W L+ R+ GMRNSNC+AIAPTATI+N Sbjct: 724 WDRGILPQDTLKLLEEARGGYVEVDMSESLDWTSLRGRISVHGMRNSNCIAIAPTATISN 783 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P++QNL+VKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + I Sbjct: 784 IIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+++ SGKKLD IY+ AW+ Sbjct: 844 DRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIFMAGASGKKLDEIYKLAWV 903 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN---------------------- 932 GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSSGGMGGGSAGGAQGAGSFGAAGGAAP 961 Query: 933 ----SSTHSLGIPSSCTSDT------ECEVCQ 954 S+ CT ECE CQ Sbjct: 962 TGALSAAPIEADGPVCTMRPGDPGFEECEACQ 993 >gi|323527396|ref|YP_004229549.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia sp. CCGE1001] gi|323384398|gb|ADX56489.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1001] Length = 1006 Score = 980 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 556/928 (59%), Positives = 689/928 (74%), Gaps = 25/928 (2%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 +G + P Y +VI+RNG V SF+PSKI+ A+ KAF+AV G + S Sbjct: 21 GQAQGAQALAPQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 RV+++++ LT+ V LL+ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 75 ARVRELVEQLTQNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 + R H + A P L + D+G + L I+E AC+ L D VS++ +++E Sbjct: 135 TQAR---GHDEQAAASTPGLSVT-DNGVTRPLDMAALRGIIESACANLGDAVSAEPIVAE 190 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ T Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 EM Y EYF ++I+ GV+A LL + ++ FDL L L RD F YLGLQ LYDR Sbjct: 245 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDR 304 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI A Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKIPAAQ 544 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604 Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR +G+G Sbjct: 605 VNLVAHLKEQADGTLALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ LHLL PYAS EAV+ AD SME + ++A AS ELAQERG YSS++GSLWD+G Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P DS+ LLAE R + ++ + + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIATYGMRNSNCIAIAPTATISNIIGV 784 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+RIP Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLK Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWVRGLK 904 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAV 926 TTYYLR+ +AT VEKST+ G LNAV Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNAV 930 >gi|134095933|ref|YP_001101008.1| ribonucleotide-diphosphate reductase subunit alpha [Herminiimonas arsenicoxydans] gi|133739836|emb|CAL62887.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Herminiimonas arsenicoxydans] Length = 966 Score = 980 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 552/964 (57%), Positives = 690/964 (71%), Gaps = 21/964 (2%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P++ N S + ++++RNG V F+PSKIS A+ KAF+AV G Sbjct: 12 PTEISNIAPLAVAASTPSVNSAALGDYRILRRNGAVVGFEPSKISIAVTKAFLAVNGGQG 71 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT V L++ + HIEDIQDQVE +LM+SG H + R YVLYR Sbjct: 72 AASARVRELVEQLTTNVVNALMRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYR 131 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181 +R + RA Q +K +L + ++G + ++ ++ AC GL+ V + + Sbjct: 132 FKRMEERAQQQAAKPVVETEHQLHVT-ENGQRRPLDMNQVRDLITAACIGLEKHVDADAI 190 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L ET KN+YDG+ +L + I ++R L+EK+P Y+ VTAR L+ +R+EV + Sbjct: 191 LRETVKNLYDGVPVEELHKSAILAARALMEKDPAYSTVTARLLMHTIRKEVFG------R 244 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + Y YF +I++G+ A LL + +FDL LA+ LK ERD F YLGLQ L Sbjct: 245 EVAQANAPAEYLVYFAEFIKKGIAAELLDAKLGEFDLKKLADALKPERDLQFGYLGLQTL 304 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI RIEMPQAF+MRVAMGLAL E +E+RA+EFYNLLSSF FM STPTLFNS Sbjct: 305 YDRYFLHIADQRIEMPQAFYMRVAMGLALNEANREERAIEFYNLLSSFDFMSSTPTLFNS 364 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT+ QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR LGAHI GTNG+S Sbjct: 365 GTQRSQLSSCYLTTVADDLGGIYDAIKENALLAKYAGGLGNDWTPVRSLGAHIKGTNGRS 424 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT Sbjct: 425 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNT 484 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV + WTLFSP + DLHD GK FE AY YE +A RGE+K+F+KI Sbjct: 485 ANWIPDLFMKRVMEKGEWTLFSPSDAPDLHDKVGKAFEEAYTGYEAKAARGELKLFKKIQ 544 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCN Sbjct: 545 ALDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCN 604 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 LGS+N+ AH + + D+ KL TIRTA+R+LDNVIDIN + + KA+ SN HR +G+G+M Sbjct: 605 LGSVNMPAHMKDGKLDHVKLQKTIRTAMRMLDNVIDINYYAVNKARDSNLRHRPVGMGIM 664 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 GFQ LH++ IPYAS +AV+ AD SME + ++A AS ELA+ERG YSS+KGSLWD+G+ Sbjct: 665 GFQDCLHMMRIPYASNDAVQFADNSMEAVCYYAYYASTELAEERGRYSSYKGSLWDRGIL 724 Query: 722 PIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P DS+ LLA+ R L + + W L+ R+K GMRNSNC+AIAPTATI+NI GVS Sbjct: 725 PQDSLKLLADERGAKYLEADYSETFDWTPLRARIKEFGMRNSNCVAIAPTATISNIIGVS 784 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P+YQNLYVKSN+SG+FT +N +LV +LK R LWDE MISDLKY DGS+ I+RIP Sbjct: 785 ACIEPTYQNLYVKSNLSGEFTEINEYLVRDLKARGLWDEVMISDLKYFDGSLAKIDRIPQ 844 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DL+ I+ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKT Sbjct: 845 DLRDIYATAFEVEPSWLVEAASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKT 904 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSCTSDT------EC 950 TYYLR+ AT EKST K G LNAV + + + +C EC Sbjct: 905 TYYLRTMGATHTEKSTSK--TGALNAVDSGGGSSTAAQSAAETDGPACILRPGDAGFEEC 962 Query: 951 EVCQ 954 E CQ Sbjct: 963 EACQ 966 >gi|187930115|ref|YP_001900602.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia pickettii 12J] gi|187727005|gb|ACD28170.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12J] Length = 994 Score = 980 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 561/993 (56%), Positives = 696/993 (70%), Gaps = 52/993 (5%) Query: 2 HPSK-DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 +PS+ + G P A + ++I+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 14 NPSQFAQSAGGTAVAPGTASGV--NLADYKIIRRNGAVVSFEPSKIAVAMTKAFLAVNGG 71 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 + S RV++++ T+ V LL+ + HIED+QDQVE +LM+SG H + R YVL Sbjct: 72 QGAASARVRELVDQQTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVL 131 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 YRE R+ RA + P L + D G + L ++ AC GL + V + Sbjct: 132 YRERRAQERAQAGET-QQQPAFIGLNVT-DGGITRPLDMAALRNVIVSACEGLGEAVDPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +L ET KN+Y+G+ + + + I +SRTLIEK+P Y++VTAR LL +RRE+L Sbjct: 190 PILKETVKNLYEGVPMTQVYDSAILASRTLIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y +YF ++I+ G+ A LL + + FDL L L RDF F YLGLQ Sbjct: 245 -EEVTQAEMSTRYVDYFPQFIKRGINAELLDDKLAQFDLARLGAALDASRDFQFNYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLHI+ +RIEMPQAFFMRVAMGLAL E ++E RA+EFY LLSSF FM STPTLF Sbjct: 304 TLYDRYFLHISETRIEMPQAFFMRVAMGLALNEIDREARAIEFYQLLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD GK FE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEQAYLAYEDKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AV Sbjct: 544 MPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH D++KL T+RTA+R+LDNVIDIN + ++KA+ SN HR Sbjct: 604 CNLGSVNLVAHLVKQADGSVVLDHEKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +G+G+MGFQ ALH+L +PYAS AV+ AD SME + ++A AS ELA+ERG YSS+KGS Sbjct: 664 PVGMGIMGFQDALHVLRVPYASDAAVQFADTSMEAVCYYAYWASTELAEERGRYSSYKGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P DS+ LLAE R L + +S + WD L+ R+K GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDSLKLLAEERGGYLEADMSSTMDWDSLRGRIKQYGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ Sbjct: 784 NIIGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLAR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ ++ATAFE++P+WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW Sbjct: 844 IDRIPQDLRDLYATAFEVEPLWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP---------------------- 931 L GLKTTYYLR+ AT VEKST+ G LNAV Sbjct: 904 LRGLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDIGGVSAAGASGVTSAAPASALD 961 Query: 932 ----NSSTHSLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 962 AAAATAQAMPEAEGAVCTMRPGDPGFEECEACQ 994 >gi|293603287|ref|ZP_06685716.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter piechaudii ATCC 43553] gi|292818322|gb|EFF77374.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter piechaudii ATCC 43553] Length = 976 Score = 979 bits (2531), Expect = 0.0, Method: Composition-based stats. Identities = 531/982 (54%), Positives = 685/982 (69%), Gaps = 37/982 (3%) Query: 3 PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57 + + A P P + +I+RNG V F+PSKI+ A+ KAF+AV Sbjct: 2 QTTIASVTRPSAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAV 61 Query: 58 EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117 G + S RV+++++NLT Q V L+++ + HIEDIQDQVE +LM+SG H + R Sbjct: 62 NGGQGAASARVRELVENLTSQAVNALVRNRPNGGTFHIEDIQDQVELALMRSGEHDVARA 121 Query: 118 YVLYREERSDVRA-----AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172 YVLYRE+R+ RA + AP L + G + L + A G Sbjct: 122 YVLYREKRTQERAAAAAAEGQEKSAAAPAEHVLNVTDA-GVRRPLDLAELRATIVAAGEG 180 Query: 173 LQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231 L + + S+ +L ET KN+YDG+ ++ + I S+R L+EK+P Y++VTAR LL +R+E Sbjct: 181 LAEFIDSEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKE 240 Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291 VL ++ + M Y EYF +I G++ LL + ++DL L L +RD Sbjct: 241 VLG------EEVSQDGMVARYAEYFPTFIARGIEGGLLSPELANYDLTRLGKALNAKRDL 294 Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF F Sbjct: 295 QFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALREADRETRAIEFYEILSSFDF 354 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 M STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L Sbjct: 355 MSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALR 414 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD Sbjct: 415 SHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGD 474 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 +RRRTHDMNTANWIPDLFMKRV + WTLFSP + DLHD YG+ FE AY YE++ Sbjct: 475 ERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGRAFEEAYIGYEKRVAS 534 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE+K+++K+ A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN Sbjct: 535 GELKLYKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 594 Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 ++ E AVCNLGS+NL+AH + D DK+ T+ A+R+LDNVIDIN + +EKA Sbjct: 595 TNESEIAVCNLGSVNLVAHMKPAAGGGFELDLDKIKRTVSIAMRMLDNVIDINYYAVEKA 654 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + SN HR +G+G+MGFQ L ++ +PYAS AVE AD SME + +HA AS LA+ERG Sbjct: 655 RNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYFASSLLAEERG 714 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 Y S++GSLW +G+ P D++ +L + R + ++ +S L WD L+ R+K GMRNSNC+A Sbjct: 715 RYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVDESSTLDWDTLRARIKQHGMRNSNCVA 774 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLK Sbjct: 775 IAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLK 834 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 Y DGS+ I+R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKL Sbjct: 835 YFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKL 894 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-------GKLNAVPVTDPNSSTHSL 938 D Y+ AW GLKTTYYLR+ ATS EKST +G + G+ A V Sbjct: 895 DDTYKLAWTRGLKTTYYLRTLGATSAEKSTGRGGELNAVTAGGQSTAAAVGAAPVLPEPE 954 Query: 939 GIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 955 VLGAVCTMRPGDPGFEECEACQ 976 >gi|311103858|ref|YP_003976711.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter xylosoxidans A8] gi|310758547|gb|ADP13996.1| ribonucleoside-diphosphate reductase, alpha subunit [Achromobacter xylosoxidans A8] Length = 976 Score = 979 bits (2531), Expect = 0.0, Method: Composition-based stats. Identities = 535/984 (54%), Positives = 692/984 (70%), Gaps = 41/984 (4%) Query: 3 PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57 + + A P P + +I+RNG V F+P+KI+ A+ KAF+AV Sbjct: 2 QTTIASVTRPTAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPNKIAIAMTKAFLAV 61 Query: 58 EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117 G + S RV+++++NLT Q V L+++ + HIEDIQDQVE +LM+SG H + R Sbjct: 62 NGGQGAASARVRELVENLTGQAVNALVRNRPNGGTFHIEDIQDQVELALMRSGEHDVARA 121 Query: 118 YVLYREERSDVRAAQS-----HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172 YVLYRE+R+ RAA + K+ AP L + G + L +E A G Sbjct: 122 YVLYREKRTQERAAAAAAADTQEKAAAPQEHVLNVTDA-GVRRPLDLAELRATIEAAGEG 180 Query: 173 LQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231 L + + ++ +L ET KN+YDG+ ++ + I S+R L+EK+P Y++VTAR LL +R+E Sbjct: 181 LAEFIDTEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKE 240 Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291 VL ++ + M Y EYF +I G++ LL + +DL L + L +RD Sbjct: 241 VLG------EEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLASYDLTKLGHALNAKRDL 294 Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF F Sbjct: 295 QFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALREADRETRAIEFYEILSSFDF 354 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 M STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L Sbjct: 355 MSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALR 414 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD Sbjct: 415 SHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGD 474 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 +RRRTHDMNTANWIPDLFMKRV + WTLFSP + DLHD YG+ FE AY YE + Sbjct: 475 ERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGRAFEEAYVGYEARVAS 534 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE+K+F+K+ A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN Sbjct: 535 GELKLFKKMPALNLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 594 Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 ++ E AVCNLGS+NL+AH + D+DK+ T+ A+R+LDNVIDIN + ++KA Sbjct: 595 TNESEIAVCNLGSVNLVAHMKPAAGGGFELDHDKIKRTVSIAMRMLDNVIDINYYAVDKA 654 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + SN HR +G+G+MGFQ L ++ +PYAS AVE AD SME + +HA AS LA+ERG Sbjct: 655 RNSNARHRPVGMGIMGFQDCLQMMRVPYASQSAVEFADRSMEAVCYHAYWASSLLAEERG 714 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 Y S++GSLW +G+ P D++ +L + R + ++ +S L WD L+ R+K GMRNSNC+A Sbjct: 715 RYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVDESSTLDWDTLRARIKKHGMRNSNCIA 774 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLK Sbjct: 775 IAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLK 834 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 Y DGS+ I+R+P +L+ ++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKL Sbjct: 835 YFDGSLSRIDRVPSELRDLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKL 894 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---------TH 936 D Y+ AW GLKTTYYLR+ ATS EKST +G G+LNAV ++S Sbjct: 895 DDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGGQSTSAAVAAAPVLPE 952 Query: 937 SLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 953 PEVLGAVCTMRPGDPGFEECEACQ 976 >gi|167618619|ref|ZP_02387250.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis Bt4] Length = 953 Score = 979 bits (2530), Expect = 0.0, Method: Composition-based stats. Identities = 548/934 (58%), Positives = 692/934 (74%), Gaps = 23/934 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLAGGAQGAPALASQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + ++P + + D+G + + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+++K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 L GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935 >gi|78065155|ref|YP_367924.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia sp. 383] gi|77965900|gb|ABB07280.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383] Length = 998 Score = 979 bits (2530), Expect = 0.0, Method: Composition-based stats. Identities = 553/997 (55%), Positives = 688/997 (69%), Gaps = 59/997 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178 RE+R R + A + ++ D+G + L +V AC GL V+ Sbjct: 131 REKRHLERQHAGEEAAAAGGEASTGINVV-DNGVTRPLDLNALRALVVSACDGLGAAVNP 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VT+R LL +RRE+L Sbjct: 190 DPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTSRILLHTIRREILG---- 245 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ EM Y EYF ++++ GV A LL + ++ FDL L L RD F YLGL Sbjct: 246 --EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+ Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 544 KIPAAQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDSEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 604 VCNLGSVNLVAHLVKQADGSFALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS AV AD SME + ++A AS ELA+ERG YSS++G Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVAFADRSMEAVCYYAYHASTELAEERGRYSSYRG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDTSESLDWTSLRSRIATHGMRNSNCVAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP------------------------- 927 WL GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSSGGAQGAAGGFGAAGGAAS 961 Query: 928 ----VTDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 V + CT ECE CQ Sbjct: 962 SSGAVDAAPALAPVEADGPVCTMRPGDPGFDECEACQ 998 >gi|167580511|ref|ZP_02373385.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis TXDOH] Length = 950 Score = 979 bits (2530), Expect = 0.0, Method: Composition-based stats. Identities = 547/934 (58%), Positives = 692/934 (74%), Gaps = 23/934 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLAGGAQGAPALASQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + ++P + + D+G + + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAAAVESPTGGSINVT-DNGVMRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMSTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+++K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLYKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL P+AS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPFASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 L GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935 >gi|332526549|ref|ZP_08402661.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax benzoatilyticus JA2] gi|332110817|gb|EGJ10994.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax benzoatilyticus JA2] Length = 950 Score = 978 bits (2529), Expect = 0.0, Method: Composition-based stats. Identities = 546/935 (58%), Positives = 688/935 (73%), Gaps = 17/935 (1%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 + G Q+I+RNG V +F+P+KI+ A+MKAF+AV G + S V++ + LTE V L++ Sbjct: 27 VSGYQIIRRNGSVVAFEPNKIAVALMKAFLAVHGAQGAASASVRETVDQLTEGVVRALVR 86 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 HIED+QD VE LM+ GHH++ R YVLYRE R+ R+ Q+ + A L Sbjct: 87 SRPGGGTFHIEDVQDHVELGLMRGGHHEVARAYVLYRERRAQERSRQAAAPQPAAPE--L 144 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ D G + + L +VE+AC+GL +DV ++ +L+ET +N+YDG+ ++ A I Sbjct: 145 HVV-DGGQRLPLDLDALRSLVEQACAGLGEDVRAEPILAETRRNLYDGVPLDEVYKAAIL 203 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 +SRTLIEK+P Y + TAR LL +RRE+L M Y EYF Y+ +GV Sbjct: 204 ASRTLIEKDPAYTRATARLLLHTIRREILGA------DVRPEAMAARYAEYFPAYVRQGV 257 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 +A LL E + FDL L LK ERD F+YLGLQ LYDRYFLH++G RIE+PQAFFMRV Sbjct: 258 QAELLDEELQRFDLARLGAALKPERDLQFDYLGLQTLYDRYFLHVDGRRIELPQAFFMRV 317 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL E ++E RA+EFY++LSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ Sbjct: 318 AMGLALNEIDREARAIEFYDVLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 377 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 AL+ENA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR Sbjct: 378 EALKENALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 437 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP Sbjct: 438 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFSP 497 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DLHD +G FE AY YER+ADRGEI+ F+++ A LWRKMLTMLFETGHPWITFK Sbjct: 498 SSCPDLHDKFGAAFEQAYVAYERKADRGEIRPFKRLPARDLWRKMLTMLFETGHPWITFK 557 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 D CN+RSPQQHVGVVHSSNLCTEITLN+S+ E AVCNLGSINL H A D KL T Sbjct: 558 DACNLRSPQQHVGVVHSSNLCTEITLNTSAGEIAVCNLGSINLAQHVAGGGIDQAKLKRT 617 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + TA+R+LDNVIDIN + ++KA+ +N HR +GLGLMGFQ L+ L +PYAS AVE AD Sbjct: 618 VSTAMRMLDNVIDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASDAAVEFAD 677 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSR 743 SME + +HA AS ELA+ERG YSS++GSLWD+GV P D++ LLA R + ++R+ Sbjct: 678 RSMEALCYHAYWASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAERGGHVEVDRSET 737 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L W L+ R+ GMRNSNC+AIAPTATI+NI GV SI+P + NL VKSN+SG+FTVVN Sbjct: 738 LDWAALRARIAVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVN 797 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LV +LK+ LWD+ M+ DLK+ DGS+ ++R+PD+LK+++ATAFE+D WL+E+A+RR Sbjct: 798 EYLVRDLKRLGLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLVEAAARR 857 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLN+Y+ SGKKLD IY+ AW GLKTTYYLR+ SAT EKST+ G + Sbjct: 858 QKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKTTYYLRTMSATHAEKSTV--APGAM 915 Query: 924 NAVP----VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 NAVP + ++ + + + +CE CQ Sbjct: 916 NAVPRHGGLEAAAAAEPASDVRFCSIDNPDCEACQ 950 >gi|74317994|ref|YP_315734.1| ribonucleotide-diphosphate reductase subunit alpha [Thiobacillus denitrificans ATCC 25259] gi|74057489|gb|AAZ97929.1| ribonucleoside-diphosphate reductase alpha chain [Thiobacillus denitrificans ATCC 25259] Length = 974 Score = 978 bits (2528), Expect = 0.0, Method: Composition-based stats. Identities = 550/968 (56%), Positives = 707/968 (73%), Gaps = 30/968 (3%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 V + + A + ++I+RNG V F P+KI+ A+ KAF+AV+G A+ Sbjct: 19 SAVPVAIPPSDAADAPAIDARYADYKIIRRNGAVVGFAPNKIAVAVTKAFIAVQGGQAAA 78 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R++++++ +T Q LL+ N + HIED+QDQVE +LM+SG H++ R YVLYRE+ Sbjct: 79 SARIRELVEAITSQVTAALLRRNPAGGTFHIEDVQDQVELALMRSGEHEVARAYVLYREK 138 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLS 183 R+ RAAQ + +L ++ +DG ++ RL ++ +ACS L + V ++ ++ Sbjct: 139 RAQERAAQKAAGVPEV---QLHVI-EDGVRKPLDTARLAGLLADACSDLGESVKAEPIMH 194 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 +++YDG+ +++E AL+ ++R++IE++P Y+ VTAR LL +R EVL + Sbjct: 195 TVLRDLYDGVPMAEVEKALVLAARSMIEQDPAYSLVTARLLLNSIRHEVLG------EAV 248 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 T +M Y EYF +I++G+ A LL E + FDL LA L RD+ F YLGLQ LYD Sbjct: 249 TQAQMSERYAEYFPAFIKKGIAAELLDEKLGQFDLARLARVLDAGRDYQFGYLGLQTLYD 308 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYFLHI +RIE+PQAFFMRVAMGLA+ E ++E RA+EFY +LSSF FM STPTLFNSGT Sbjct: 309 RYFLHIEENRIELPQAFFMRVAMGLAINEIDRESRAIEFYQVLSSFDFMSSTPTLFNSGT 368 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 RH QLSSC+LTTV DDL GI+ A++ENAML KY+GGLGNDWTPVR +GA I GTNGKSQG Sbjct: 369 RHSQLSSCYLTTVTDDLDGIYQAIKENAMLQKYAGGLGNDWTPVRAMGARIKGTNGKSQG 428 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTAN Sbjct: 429 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAN 488 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFM+RV + WTLFSP++V DLHDLYG++F AY YER+ADRGE+K++++I A+ Sbjct: 489 WIPDLFMQRVMEGGDWTLFSPNDVPDLHDLYGRKFAEAYTEYERKADRGELKLYKRIPAL 548 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLG Sbjct: 549 QLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDHEVAVCNLG 608 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+NL+ H + + D DKL +TI TA+R+LDNV+D+N + + KA+ SN HR +GLG+MGF Sbjct: 609 SVNLVNHLKDGKLDLDKLKNTIHTAMRMLDNVVDVNYYAVGKARNSNLKHRPVGLGIMGF 668 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL L + YAS +AVE AD SME ++++A AS ELAQERG YSS++GSLW +G+ P Sbjct: 669 QDALQELRVAYASNDAVEFADRSMEAVAYYAYWASTELAQERGRYSSYEGSLWSKGILPH 728 Query: 724 DSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 DS LL E R L ++ ++ L WD L++R+ GMRNSNC+AIAPTATIANI GVS SI Sbjct: 729 DSNRLLLEERGGYLEVDSSATLDWDSLRQRIAQYGMRNSNCLAIAPTATIANIVGVSASI 788 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNLYVKSN+SG+FTV N +LV +LK+ +WDE M++D+KY DGS+ I+RIP +L+ Sbjct: 789 EPTYQNLYVKSNLSGEFTVANKYLVADLKKLGMWDEVMVADIKYFDGSLARIDRIPAELR 848 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AWL GLKTTYY Sbjct: 849 ALYATAFEMEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKLDDIYKLAWLRGLKTTYY 908 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPV----------TDPNSSTHSLGIPSSCTSDT---- 948 LR+ ATS EKST KG G+LNAV + CT Sbjct: 909 LRTLGATSAEKSTGKG--GELNAVSAHVGGGMSAMDAAAANLPVPEIEGKVCTMRPGDPG 966 Query: 949 --ECEVCQ 954 ECE CQ Sbjct: 967 FEECEACQ 974 >gi|172059583|ref|YP_001807235.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia ambifaria MC40-6] gi|171992100|gb|ACB63019.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria MC40-6] Length = 999 Score = 978 bits (2528), Expect = 0.0, Method: Composition-based stats. Identities = 550/998 (55%), Positives = 689/998 (69%), Gaps = 60/998 (6%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVREQVEQLTHSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRA--AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178 RE+R R + + + + + ++ D+G + L ++ AC+GL V+ Sbjct: 131 REKRHLERQHAGEEAAAAGGEASAGINVV-DNGVTRPLDMNALRELIVSACAGLGAAVNP 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ EM Y EYF ++++ GV A LL + ++ FDL L L RD F YLGL Sbjct: 246 --EEVLQAEMATRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+ Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDQDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++G Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LL E R + ++ + L W L+ R+ GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928 WL GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGSSSGGAQGAAGGFGAAGGD 961 Query: 929 ------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 962 ASSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999 >gi|187925408|ref|YP_001897050.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia phytofirmans PsJN] gi|187716602|gb|ACD17826.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia phytofirmans PsJN] Length = 1001 Score = 978 bits (2528), Expect = 0.0, Method: Composition-based stats. Identities = 552/929 (59%), Positives = 687/929 (73%), Gaps = 25/929 (2%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G + S Sbjct: 21 GQAQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 75 ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 + R H P L + D+G + L I+E ACS L D VS+ +++E Sbjct: 135 TQAR---GHDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ T Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILK------EEVT 244 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 EM Y EYF ++I+ GV+A LL + ++ FDL L L RD F YLGLQ LYDR Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP DLHDL+G +FE AY YE + RGEIK+F+KI A Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDLFGADFEKAYTAYEDKVARGEIKLFKKIPAAQ 544 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604 Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR +G+G Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ LHLL PYAS EAV+ AD SME + ++A AS ELAQERG YSS++GSLWD+G Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P DS+ LLA+ R + ++ + + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV Sbjct: 725 ILPQDSVKLLADARGGYVEVDSSESMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGV 784 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+RIP Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLK Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 TTYYLR+ +AT VEKST+ G LNAV Sbjct: 905 TTYYLRTMAATHVEKSTV--AHGALNAVS 931 >gi|115350551|ref|YP_772390.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia ambifaria AMMD] gi|115280539|gb|ABI86056.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia ambifaria AMMD] Length = 999 Score = 978 bits (2527), Expect = 0.0, Method: Composition-based stats. Identities = 549/998 (55%), Positives = 690/998 (69%), Gaps = 60/998 (6%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGTEQGAKALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVREQVEQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRA--AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178 RE+R R + + + + + ++ D+G + L ++ +C+GL V+ Sbjct: 131 REKRHLERQHAGEEAAAAGGEASAGINVV-DNGVTRPLDMNALRELIVSSCAGLGAAVNP 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ EM Y EYF ++++ GV A LL + ++ FDL L L RD F YLGL Sbjct: 246 --EEVLQAEMTTRYTEYFPQFLKRGVDAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 304 QTLYDRYFLHVEGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+ Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 604 VCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++G Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LL E R + ++ + L W L+ R+ GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDTLKLLTEARGGYVEVDTSESLDWTTLRSRIAAHGMRNSNCVAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 844 RIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV------------------------ 928 WL GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 WLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGAGGSSSGGAQGAAGGFGAAGGD 961 Query: 929 ------TDPNSSTHSLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 962 ASSGAVNAAAALAPVEADGPVCTMRPGDAGFDECEACQ 999 >gi|330974388|gb|EGH74454.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. aceris str. M302273PT] Length = 953 Score = 978 bits (2527), Expect = 0.0, Method: Composition-based stats. Identities = 547/956 (57%), Positives = 692/956 (72%), Gaps = 18/956 (1%) Query: 3 PSKDVNKGDEDAFPS-------LAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFM 55 + + P L+ P + ++VIKRNG V + KI+ AI KAF+ Sbjct: 2 QTDTTRENSPTGAPQPSQTQQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFL 58 Query: 56 AVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKIT 115 AVEG A+ S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ Sbjct: 59 AVEGGNAAASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVA 118 Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD 175 R+YV+YR+ R+ RA ++ + P ++I DG+ + RL IV EAC GL + Sbjct: 119 RDYVIYRDSRAKERAVRTPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAE 177 Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 V + ++ +ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L Sbjct: 178 VDADLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG- 236 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295 ATHHEM LY + Y+ G+K LL+ + +FDL L + +ERD F Y Sbjct: 237 FLGVADSATHHEMADLYAKALPAYVAAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTY 296 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 LGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M ST Sbjct: 297 LGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSST 356 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTLFN+GT PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I Sbjct: 357 PTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIK 416 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRR Sbjct: 417 GTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRR 476 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEI 534 THDMNTANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+I Sbjct: 477 THDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKI 536 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K+F+ I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ Sbjct: 537 KLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNK 596 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 +E AVCNLGSINL H + + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR Sbjct: 597 DEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHR 656 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GS Sbjct: 657 PVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGS 716 Query: 715 LWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 LW +G+ P+DS +L E R ++++ L W ++ RV+ G+RNSN MAIAPTATI Sbjct: 717 LWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIMAIAPTATI 775 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 ANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+DLKY+DGS+ Sbjct: 776 ANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQ 835 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR A Sbjct: 836 QIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMA 895 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GLKTTYYLR+ +ATS EKST+ GKLNAV ++ P + Sbjct: 896 WYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPTEAAP 949 >gi|300690380|ref|YP_003751375.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum PSI07] gi|299077440|emb|CBJ50066.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum PSI07] Length = 987 Score = 977 bits (2526), Expect = 0.0, Method: Composition-based stats. Identities = 550/986 (55%), Positives = 687/986 (69%), Gaps = 44/986 (4%) Query: 5 KDVNKGDEDAFPSLAYPFPEK--IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 + P+ ++I+RNG V F+PSKI+ A+ KAF+AV G Sbjct: 10 SGTANPAAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT+ V LL+ + HIED+QDQVE +LM+SG H + R YVLYR Sbjct: 70 AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E R+ RA ++ P L + D G + L ++ AC+GL + V + + Sbjct: 130 ERRAQERAQAGETQQP-PAFIGLNVT-DGGITRPLDMAALRNLIVSACAGLGEAVDPEPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L ET KN+Y+G+ S + + I ++RTLIEK+P Y++VTAR LL +RRE+L + Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQVTARILLHTIRREILG------E 241 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + T EM Y +YF ++I+ G+ A LL E + FDL L L RD F YLGLQ L Sbjct: 242 EVTQAEMAARYADYFPQFIKRGINAGLLDEKLAQFDLAKLGAALDASRDLQFNYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 +DRYFLHI+ RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFNS Sbjct: 302 FDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDRESRAIEFYQLLSSFDFMSSTPTLFNS 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV +N WTLFSP DLHD GK FE AY YE + RGEIK+F+K+ Sbjct: 482 ANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGKAFETAYLGYEEKVARGEIKLFKKMP 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCN Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601 Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGS+NL+AH D+DKL T+RTA+R+LDNVIDIN + ++KA+ SN HR + Sbjct: 602 LGSVNLVAHLVTQADGSVALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPV 661 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+MGFQ ALH+L IPYAS AV+ AD SME + ++A AS ELA+ERG YS++KGSLW Sbjct: 662 GLGIMGFQDALHVLRIPYASDAAVQFADNSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D+G+ P DS+ LLA+ R L + +S + WD L+ R++ GMRNSNC+AIAPTATI+NI Sbjct: 722 DRGILPQDSLKLLAQERGGYLEADLSSSMDWDSLRARIQQYGMRNSNCVAIAPTATISNI 781 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I+ Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGK LD Y+ AWL Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVD---------------------GKLNAVPVTDPNSS 934 GLKTTYYLR+ AT VEKST+ +A+ + Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSRGTLNAVSSGSDVGSVSAAGASPVAPASALDAVAATAP 961 Query: 935 THSLGIPSSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 962 AMPEAEGAVCTMRPGDPGFEECEACQ 987 >gi|238026166|ref|YP_002910397.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia glumae BGR1] gi|237875360|gb|ACR27693.1| Ribonucleotide-diphosphate reductase alpha subunit [Burkholderia glumae BGR1] Length = 999 Score = 977 bits (2526), Expect = 0.0, Method: Composition-based stats. Identities = 550/998 (55%), Positives = 695/998 (69%), Gaps = 60/998 (6%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P ++G P + +VI+RNG V +F+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGTASQGAPALAPQATF------ADYKVIRRNGSVVAFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQSVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 RE+R RA A + + G + L ++ AC GL V+ Sbjct: 131 REKRHLERAHSDAPADAPAGAAGINVTDA-GVTRPLDMGALRGLIASACEGLGSAVNPDP 189 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 IVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG------ 243 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ + EMQ Y EYF ++++ GV+A LL + ++ FDLV L L RD F YLGLQ Sbjct: 244 EEVSQGEMQARYAEYFPQFLKRGVEAELLDDKLLQFDLVRLGEALDAGRDLQFGYLGLQT 303 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFY++LSSF FM STPTLFN Sbjct: 304 LYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYHVLSSFDFMSSTPTLFN 363 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTR QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGK Sbjct: 364 SGTRRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGK 423 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 424 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 483 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGE+K+F+KI Sbjct: 484 TANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYLGYEEKVARGELKLFKKI 543 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVC Sbjct: 544 PAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDSEIAVC 603 Query: 601 NLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 NLGSVNLVAHLVKQADGSYALDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRP 663 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG+MGFQ LHLL P++S AVE AD SME + ++A AS EL++ERG YSS++GSL Sbjct: 664 VGLGIMGFQDCLHLLRTPFSSDAAVEFADRSMEAVCYYAYWASTELSEERGRYSSYRGSL 723 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ LL E R + ++ +S L W L++R+ GMRNSNC+AIAPTATI+N Sbjct: 724 WDRGILPQDTLKLLEEARGGYVEVDMSSSLDWTSLRERISLHGMRNSNCIAIAPTATISN 783 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P++QNL+VKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + I Sbjct: 784 IIGVSPCIEPTFQNLFVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSRI 843 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+++ SGKKLD IY+ AW+ Sbjct: 844 DRIPSDLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIFMAGASGKKLDEIYKLAWV 903 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG--------------- 939 GLKTTYYLR+ +AT VEKST+ G LNAVP D + + G Sbjct: 904 RGLKTTYYLRTMAATHVEKSTV--AHGALNAVPSGDGGAGGGAAGGAHGAAGGFGAAGGA 961 Query: 940 -----------------IPSSCTSDT------ECEVCQ 954 C ECE CQ Sbjct: 962 GSGVLNAAPAAEAEIAVDGPVCMMRPGDPGFEECEACQ 999 >gi|254253305|ref|ZP_04946623.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158] gi|124895914|gb|EAY69794.1| Ribonucleotide reductase alpha subunit [Burkholderia dolosa AUO158] Length = 997 Score = 977 bits (2526), Expect = 0.0, Method: Composition-based stats. Identities = 555/996 (55%), Positives = 691/996 (69%), Gaps = 58/996 (5%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGAEHGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++ ++ LT V LL+ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVREQVEQLTRNVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRAAQSHSKSDAPIAPK--LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSS 178 RE+R R + A + ++ D+G + L ++ AC GL V+ Sbjct: 131 REKRHLERQHAGEEAAAAGGEASSGINVV-DNGVTRPLDLNALRALIVSACDGLGAAVNP 189 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 EPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG---- 245 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 ++ EM Y EYF +++ GV+A LL + ++ FDL L L RD F YLGL Sbjct: 246 --EEVVQSEMSTRYAEYFPQFLRRGVEAGLLDDKLLQFDLKRLGEALDANRDLQFGYLGL 303 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q LYDRYFLH++G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTL Sbjct: 304 QTLYDRYFLHVDGTRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTL 363 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTN Sbjct: 364 FNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTN 423 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHD Sbjct: 424 GKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHD 483 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+ Sbjct: 484 MNTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYTAYEEKVARGEIKLFK 543 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 KI A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E A Sbjct: 544 KIPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIA 603 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN H Sbjct: 604 VCNLGSVNLVAHLVKQPDGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLKH 663 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++G Sbjct: 664 RPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRG 723 Query: 714 SLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 SLWD+G+ P D++ LLAE R + ++ + L W L+ R+ T GMRNSNC+AIAPTATI Sbjct: 724 SLWDRGILPQDTLKLLAEARGGYVEVDMSETLDWAALRARIATHGMRNSNCVAIAPTATI 783 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 +NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 SNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLS 843 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ A Sbjct: 844 RIDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLA 903 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--------------- 937 WL G KTTYYLR+ +AT VEKST+ G LNAVP +SS + Sbjct: 904 WLRGKKTTYYLRTMAATHVEKSTV--AHGALNAVPTGGGSSSGGAQGAAGGFGAAGGEAS 961 Query: 938 -------------LGIPSSCTSDT------ECEVCQ 954 CT ECE CQ Sbjct: 962 SGALNAAPALAPVEADGPVCTMRPGDPGFDECEACQ 997 >gi|73542625|ref|YP_297145.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia eutropha JMP134] gi|72120038|gb|AAZ62301.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134] Length = 979 Score = 977 bits (2525), Expect = 0.0, Method: Composition-based stats. Identities = 554/952 (58%), Positives = 695/952 (73%), Gaps = 32/952 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + ++I+RNG V +F+PSKI+ A+ KAF+AV G + S RV++I++ LT+ V L++ Sbjct: 36 QDYKIIRRNGAVVAFEPSKINVAMTKAFLAVNGGQGAASARVREIVEQLTQNVVRALVRS 95 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146 S +HIED+QD VE +LM+SG H++ R YVLYRE+R+ RA+ S ++ Sbjct: 96 RPSGGAIHIEDVQDHVELALMRSGEHEVARSYVLYREKRAQERASASAQAVARVQESGIQ 155 Query: 147 IMMDD-GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + D G + L +++ AC+GL + VS++ +L ET KN+Y+G+ + + + I Sbjct: 156 FNVTDAGVTKPLDIVALHDLLDTACAGLGKAVSAEPILKETLKNLYEGVPMTQVYDSAIL 215 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++RTLIEK+P+Y++VTAR LL +R+E+L + T EM Y EYF ++I G+ Sbjct: 216 AARTLIEKDPDYSQVTARILLHTIRKEILGA------EVTQAEMTTRYAEYFPKFIARGI 269 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 A LL E + FDL L L RDF F YLGLQ LYDRYFLHI+ +RIEMPQAFFMRV Sbjct: 270 AAELLDEKLATFDLARLGAALDAGRDFQFNYLGLQTLYDRYFLHIDETRIEMPQAFFMRV 329 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ Sbjct: 330 AMGLALNEADREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGIY 389 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR Sbjct: 390 EALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 449 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 450 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSP 509 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DLHD GK FE AY YE +A GE+K+F+K+ A+ LWRKML MLFETGHPWITFK Sbjct: 510 STCPDLHDKVGKAFEQAYLGYEAKAASGELKLFKKVPAMQLWRKMLGMLFETGHPWITFK 569 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYD 619 DPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+ Sbjct: 570 DPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLTKQADGSYVLDHA 629 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL TIRTA+R+LDNVIDIN + +EKA+ SN HR +G+G+MGFQ LH+L PYAS A Sbjct: 630 KLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDAA 689 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738 V+ AD SME + ++A AS ELA+ERG Y ++ GSLWD+G+ P DS+ LLAE R L + Sbjct: 690 VKFADTSMEAVCYYAYQASTELAEERGRYETYAGSLWDRGILPQDSLKLLAEERGGYLEV 749 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + +S + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG+ Sbjct: 750 DHSSSMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGE 809 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FTVVN +LV +LK+R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE++P WL+E Sbjct: 810 FTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVE 869 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT VEKST+ Sbjct: 870 AASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVSR 929 Query: 919 VDGKLNAVPVTDP----------NSSTHSLGIPSSCTSDT------ECEVCQ 954 G LNAV ++ + CT ECE CQ Sbjct: 930 --GSLNAVSSGSDGGSAMDAAAASAPAMPEAEGAVCTMRPGDPGFEECEACQ 979 >gi|83649536|ref|YP_437971.1| ribonucleotide-diphosphate reductase subunit alpha [Hahella chejuensis KCTC 2396] gi|83637579|gb|ABC33546.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC 2396] Length = 953 Score = 977 bits (2524), Expect = 0.0, Method: Composition-based stats. Identities = 536/932 (57%), Positives = 679/932 (72%), Gaps = 6/932 (0%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 +QVIKR G FD KI+ A+ KAF+AVEG+ AS S RV+D ++ L + V RL Sbjct: 26 HNALLQVIKRTGQAAPFDDRKIAMAVTKAFLAVEGQSASGSPRVRDSVEKLVKDIVARLR 85 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 + + VHIE+IQD VE LM+ G HK+ R YVLYREE + RA + S+ P Sbjct: 86 RRSPEGGSVHIEEIQDLVELGLMRGGFHKVARAYVLYREEHARQRAP-APSEQSGETHPD 144 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + DG+ N RL ++ +AC+ L VS + VL KN+Y+G+ D+ AL+ Sbjct: 145 INVKFADGSEAPLNMGRLRTVISDACADLDGVSEEKVLQGALKNLYNGVKHKDVNAALVM 204 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++R LIE+EPNY+ V AR LL+ LR E L+ + AT EM LYP F +E V Sbjct: 205 AARPLIEEEPNYSYVCARLLLDGLREESLSYLNIAAS-ATEGEMAELYPTAFRAIVERCV 263 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + LL ++ FDL L LK ERD YLGLQ LYDRYF+H +R+E+PQAFFMRV Sbjct: 264 EHELLSPELLKFDLERLGAALKPERDRQLTYLGLQTLYDRYFIHWRETRLELPQAFFMRV 323 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGL+++E + RA+EFY+LLSSF +MCSTPTLFN+GT PQLSSC+LTTVPDDL GI+ Sbjct: 324 AMGLSVQEDDPNARAIEFYDLLSSFDYMCSTPTLFNAGTNRPQLSSCYLTTVPDDLEGIY 383 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 GA+++NA+L+K++GGLGNDWTPVR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR Sbjct: 384 GAIKDNALLSKWAGGLGNDWTPVRSLGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 443 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMN+ANWIPDLFMKRV ++ WTLFSP Sbjct: 444 KGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNSANWIPDLFMKRVFEDKEWTLFSP 503 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + DLHDLYG FE Y +YE + G I +F+K+ A LWRKML+MLFETGHPW+TFK Sbjct: 504 SDAPDLHDLYGSAFEARYTHYESLVESGAITLFKKVPAQNLWRKMLSMLFETGHPWVTFK 563 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+ H N + D+D+L +T Sbjct: 564 DPCNLRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLVNHIRNGEIDHDRLRNT 623 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + TAVR+LDNVIDIN + + +A+ +N HR +G+GLMGFQ AL+ L +PY+S EAV AD Sbjct: 624 VYTAVRMLDNVIDINYYAVPQARNANLRHRPVGMGLMGFQDALYKLGLPYSSVEAVRFAD 683 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTS 742 +SME IS+ AI+AS LA+ERG Y +++GSLWDQGV PIDS+ L + R ++R Sbjct: 684 QSMELISYFAITASSNLAKERGRYETYEGSLWDQGVLPIDSLDRLEQERGAEFCTLDRGH 743 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W +++ VK GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTV+ Sbjct: 744 SLDWAPVRELVKKQGMRNSNVMAIAPTATISNIVGVSQSIEPTYQNLFVKSNLSGEFTVI 803 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV ELK RDLWD M++DLKY DGS+ I+RIP+D+K++ TAFEIDP WL+E+ASR Sbjct: 804 NPWLVQELKARDLWDSVMVNDLKYFDGSVAQIDRIPEDVKQLFLTAFEIDPRWLVEAASR 863 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWIDQ QSLNLY+ EPSGKKLD +Y+ AW GLKTTYYLRS AT +EK + + Sbjct: 864 RQKWIDQGQSLNLYMAEPSGKKLDNLYKLAWSRGLKTTYYLRSLGATQMEK--ISSGASQ 921 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ++ D +CE CQ Sbjct: 922 SDNAKPDVDDTENQEPQPKFCSILDPDCEACQ 953 >gi|170695323|ref|ZP_02886469.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia graminis C4D1M] gi|170139723|gb|EDT07905.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia graminis C4D1M] Length = 1001 Score = 977 bits (2524), Expect = 0.0, Method: Composition-based stats. Identities = 548/918 (59%), Positives = 685/918 (74%), Gaps = 23/918 (2%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 +G + P Y +VI+RNG V SF+PSKI+ A+ KAF+AV G + S Sbjct: 21 GQAQGAQALAPQATY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 75 ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 + R H + A P L + D+G + L I+E AC+ L D VS++ +++E Sbjct: 135 TQAR---GHDEQVAGSTPGLTVT-DNGVSRPLDMAALRGIIESACANLGDAVSAEPIVAE 190 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ T Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 EM Y EYF ++I+ GV+A LL + ++ FDL L L RD F YLGLQ LYDR Sbjct: 245 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 364 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+K+ A Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYTAYEDKVARGEIKLFKKVPAAQ 544 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604 Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR +G+G Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ LHLL PYAS EAV+ AD SME + ++A AS ELAQERG YSS++GSLWD+G Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P DS+ LLA+ R + ++ + + W EL++R+ T GMRNSNC+AIAPTATI+NI GV Sbjct: 725 ILPQDSVKLLADARGGYVEVDSSESMDWTELRQRIATYGMRNSNCIAIAPTATISNIIGV 784 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+RIP Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLK Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904 Query: 899 TTYYLRSRSATSVEKSTL 916 TTYYLR+ +AT VEKST+ Sbjct: 905 TTYYLRTMAATHVEKSTV 922 >gi|222112112|ref|YP_002554376.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax ebreus TPSY] gi|221731556|gb|ACM34376.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax ebreus TPSY] Length = 974 Score = 976 bits (2523), Expect = 0.0, Method: Composition-based stats. Identities = 539/968 (55%), Positives = 686/968 (70%), Gaps = 38/968 (3%) Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 A PS + Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++++ Sbjct: 18 ATPSATPTGAHPLMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT+ V L++ + HIED+QDQVE LM+ HH++ R YVLYRE R+ RA + Sbjct: 78 QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192 P P L + D G + + RL+ +VE AC+GL DV + +++ET +N+YDG Sbjct: 138 EQL--LPQMPALYV-QDQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + ++ A I ++RTLIEK+P Y TAR LL + REVL + M Y Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPANMALAY 248 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E F ++I +GV LL +M+FDL L + LK ERD F+YLGLQ LYDRYFLH+ + Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQ+FFMRVAMGLAL+E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+ Sbjct: 309 RIELPQSFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHDLYG+ FE AY YE +A+ GE+ +F+++ AV LWRKML+M Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL H Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+DKL T+ TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ AL+ L I Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS AVE AD SME + ++A AS +LAQERG YSS++GSLW QG+ P+DS+ LL + Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728 Query: 733 R-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R + ++RT+RL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL V Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+SG+FTV+N +LV +LKQ LWD+ M+ DLK+ GS+ I+R+P +K ++ATAFE+ Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT V Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908 Query: 912 EKSTLKGVDGKLNAVPVTDPNSST-------------------------HSLGIPSSCTS 946 E ST+ +LNAV ++ + + Sbjct: 909 EMSTVNTR--QLNAVASGASDTGEGTMAPSSALNAAVAAAQAQAQAAAIPATDVKFCAID 966 Query: 947 DTECEVCQ 954 D CE CQ Sbjct: 967 DPGCEACQ 974 >gi|296160507|ref|ZP_06843323.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. Ch1-1] gi|295889256|gb|EFG69058.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. Ch1-1] Length = 1001 Score = 976 bits (2523), Expect = 0.0, Method: Composition-based stats. Identities = 548/918 (59%), Positives = 681/918 (74%), Gaps = 23/918 (2%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G + S Sbjct: 21 GQAQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 75 ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 + R H P L + D+G + L I+E ACS L D VS+ +++E Sbjct: 135 TQAR---GHDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ T Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 EM Y EYF ++I+ GV+A LL + ++ FDL L L RD F YLGLQ LYDR Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LS+F FM STPTLFNSGTR Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTR 364 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI A Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEKAYTAYEDKVARGEIKLFKKIPAAQ 544 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604 Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR +G+G Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ LHLL PYAS EAV+ AD SME + ++A AS ELAQERG YSS++GSLWD+G Sbjct: 665 IMGFQDCLHLLRTPYASEEAVKFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P DS+ LLAE R + ++ + + W EL+ R+ T GMRNSNC+AIAPTATI+NI GV Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIATYGMRNSNCVAIAPTATISNIIGV 784 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+RIP Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLK Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904 Query: 899 TTYYLRSRSATSVEKSTL 916 TTYYLR+ +AT VEKST+ Sbjct: 905 TTYYLRTMAATHVEKSTV 922 >gi|317402621|gb|EFV83181.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter xylosoxidans C54] Length = 976 Score = 976 bits (2523), Expect = 0.0, Method: Composition-based stats. Identities = 530/984 (53%), Positives = 684/984 (69%), Gaps = 41/984 (4%) Query: 3 PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57 + + A P P + +I+RNG V F+P KI+ A+ KAF+AV Sbjct: 2 QTTIASVTRPSAVPPSQTDSPADANGGQWASYNIIRRNGSVVGFEPGKIAIAMTKAFLAV 61 Query: 58 EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117 G + S RV+++++ LT Q V L+++ HIEDIQDQVE +LM+SG H + R Sbjct: 62 NGGQGAASARVRELVEQLTTQAVNALVRNRPGGGTFHIEDIQDQVELALMRSGQHDVARA 121 Query: 118 YVLYREERSDVRA-----AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSG 172 YVLYRE+R+ RA P L + G + L + A G Sbjct: 122 YVLYREKRTQERAAAAAAEGQQKVDAVPQENVLHVTDA-GVRRPLDIAELRATIVAAGEG 180 Query: 173 LQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRRE 231 L + + S+ +L ET KN+YDG+ ++ + I S+R L+EK+P Y++VTAR LL +R+E Sbjct: 181 LAEFIDSEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKE 240 Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291 VL ++ + M Y EYF +I G++ LL + +DL L L +RD Sbjct: 241 VLG------EEVSQDGMAARYAEYFPTFIARGIEGGLLSPDLASYDLTKLGKALNAKRDL 294 Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+ET++E RA+EFY +LSSF F Sbjct: 295 QFGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRETDREARAIEFYEILSSFDF 354 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 M STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L Sbjct: 355 MSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALR 414 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGD Sbjct: 415 SHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGD 474 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 +RRRTHDMNTANWIPDLFMKRV + WTLFSP + DLHD YGK FE AY YE + Sbjct: 475 ERRRTHDMNTANWIPDLFMKRVMEGGEWTLFSPSDCPDLHDKYGKAFEEAYVGYEARVAS 534 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 G++K+F+K+ A+ LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN Sbjct: 535 GDLKLFKKMPALTLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 594 Query: 592 SSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 ++ E AVCNLGS+NL+AH + D++K+ T+ A+R+LDNVIDIN + ++KA Sbjct: 595 TNESEIAVCNLGSVNLVAHMKPAAGGGFELDHEKIKRTVSIAMRMLDNVIDINYYAVDKA 654 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + SN HR +G+G+MGFQ L ++ +PYAS AVE AD SME + +HA AS LA+ERG Sbjct: 655 RNSNARHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSLLAEERG 714 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 Y S++GSLW +G+ P D++ +L + R + ++ +S L WD L+ R+K GMRNSNC+A Sbjct: 715 RYQSYEGSLWSRGILPQDTLKMLRDERGGHVEVDESSTLDWDALRARIKQHGMRNSNCIA 774 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAPTATI+NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLK Sbjct: 775 IAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLK 834 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 Y DGS+ I+R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKL Sbjct: 835 YFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMAGASGKKL 894 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS---------TH 936 D Y+ AW GLKTTYYLR+ ATS EKST +G G+LNAV +++ Sbjct: 895 DDTYKLAWKRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGGTSAAAPVSAAPVLPE 952 Query: 937 SLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 953 PEVLGAVCTMRPGDPGFEECEACQ 976 >gi|121595924|ref|YP_987820.1| ribonucleotide-diphosphate reductase subunit alpha [Acidovorax sp. JS42] gi|120608004|gb|ABM43744.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax sp. JS42] Length = 972 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 539/966 (55%), Positives = 686/966 (71%), Gaps = 36/966 (3%) Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 A PS + Q+I+RNG V F+P KI+ A+MKAF+AV G + S V++++ Sbjct: 18 ATPSATPTGAHPLMHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGAQGAASASVREVVD 77 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT+ V L++ + HIED+QDQVE LM+ HH++ R YVLYRE R+ RA + Sbjct: 78 QLTQAVVRALMRSRPAGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRERRAQERAQKK 137 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDG 192 P P L + D G + + RL+ +VE AC+GL DV + +++ET +N+YDG Sbjct: 138 EQL--LPQMPALYV-QDQGQRVELDILRLQSLVEAACTGLGSDVQAAPIIAETMRNLYDG 194 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + ++ A I ++RTLIEK+P Y TAR LL + REVL + +M Y Sbjct: 195 VPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLG------RDVNPADMALAY 248 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E F ++I +GV LL +M+FDL L + LK ERD F+YLGLQ LYDRYFLH+ + Sbjct: 249 AENFPQFIRQGVDNELLDPRLMEFDLQRLGSALKAERDLQFDYLGLQTLYDRYFLHVRKT 308 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQ FFMRVAMGLAL+E ++ RA+EFY LLSSF FM STPTLFNSGT QLSSC+ Sbjct: 309 RIELPQTFFMRVAMGLALREDDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQLSSCY 368 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTNG+SQGV+PFLKV N Sbjct: 369 LTTVPDELEGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTNGESQGVVPFLKVVN 428 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 429 DTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 488 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHDLYG+ FE AY YE +A+ GE+ +F+++ AV LWRKML+M Sbjct: 489 VMEKGLWTLFSPSDVPDLHDLYGQAFEKAYIAYEAKAESGELPLFKRVPAVDLWRKMLSM 548 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL H Sbjct: 549 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDAETAVCNLGSVNLARHLK 608 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+DKL T+ TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ AL+ L I Sbjct: 609 DGGIDHDKLRKTVSTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYELRI 668 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS AVE AD SME + ++A AS +LAQERG YSS++GSLW QG+ P+DS+ LL + Sbjct: 669 PYASDAAVEFADTSMEALCYYAYWASTDLAQERGQYSSYQGSLWSQGILPLDSLQLLEQE 728 Query: 733 R-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R + ++RT+RL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ NL V Sbjct: 729 RGGYVEVDRTTRLDWDMLRAKIAQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSV 788 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+SG+FTV+N +LV +LKQ LWD+ M+ DLK+ GS+ I+R+P +K ++ATAFE+ Sbjct: 789 KSNLSGEFTVINQYLVRDLKQLGLWDDVMLMDLKHFKGSLHAIDRVPLTVKALYATAFEV 848 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT V Sbjct: 849 APTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWIRGLKTTYYLRTQSATHV 908 Query: 912 EKSTLKGVDGKLNAVPVTDPNSST-----------------------HSLGIPSSCTSDT 948 E ST+ +LNAV ++ + + D Sbjct: 909 EMSTVNTR--QLNAVASGASDTGEGTMAPSSALNAAVAAAQAQAAAIPATDVKFCAIDDP 966 Query: 949 ECEVCQ 954 CE CQ Sbjct: 967 GCEACQ 972 >gi|315122311|ref|YP_004062800.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495713|gb|ADR52312.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 934 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 712/936 (76%), Positives = 811/936 (86%), Gaps = 3/936 (0%) Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78 YPFPEK+KG++VI+RNG T FDPSKIS AIMKAF+AVEGK AS S RV++I+ LTE+ Sbjct: 2 TYPFPEKVKGIKVIRRNGKTTPFDPSKISWAIMKAFIAVEGKSASSSSRVRNIVNVLTEE 61 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 TV +LL S LI+HIE IQDQVE SLM++ HHK+ REYVLYREERS +R A++HSKSD Sbjct: 62 TVLKLLHEYSSNLIIHIEAIQDQVEASLMRNDHHKVAREYVLYREERSGIRTAKAHSKSD 121 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 P LKI MDD T + +SKRL+MI+EE+C+GLQDVS +++LSET KNMYDG+SE +L Sbjct: 122 ---TPHLKIRMDDDTFVPLDSKRLKMIIEESCAGLQDVSLELILSETIKNMYDGMSEVEL 178 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 E AL+F+SR LIE+EPNYAKVT R LL+KLRREVLT +YK P+KATH EM LY YF + Sbjct: 179 ELALVFASRALIEREPNYAKVTTRLLLDKLRREVLTAIYKTPKKATHQEMSNLYKNYFLQ 238 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 YIEEG+KA LL ESM +FDL YLAN LK +RD FEYLGLQ LYDRYFLH++GSR EMPQ Sbjct: 239 YIEEGIKAHLLAESMKEFDLSYLANALKPDRDLMFEYLGLQTLYDRYFLHVDGSRFEMPQ 298 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 AFFMRVAMG+ALKE EKEKRAVEFYNL+SSFHFMCSTPTLFN+GTRHPQLSSCFLTTVPD Sbjct: 299 AFFMRVAMGIALKEPEKEKRAVEFYNLISSFHFMCSTPTLFNAGTRHPQLSSCFLTTVPD 358 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL IF A+++NA+LAKYSGGLGNDWT VRGLG+HI GTNGKSQGVIPFLKVANDTAVAV Sbjct: 359 DLGDIFEAIKDNALLAKYSGGLGNDWTSVRGLGSHIQGTNGKSQGVIPFLKVANDTAVAV 418 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV +N Sbjct: 419 NQGGKRKGAVCAYLETWHIDIEEFLNLRKNTGDDRRRTHDMNTANWVPDLFMKRVEKNEQ 478 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSPDEV DLH LYG +FE AY NYE++A+RGEIK+FRKI+AV+LWRKMLTM+FETGH Sbjct: 479 WTLFSPDEVGDLHHLYGHDFEKAYSNYEKKAERGEIKLFRKIAAVSLWRKMLTMVFETGH 538 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PWITFKDPCNIRSPQQHVG V SNLCTEITLN S +E AVCNLGSINL AH N DY Sbjct: 539 PWITFKDPCNIRSPQQHVGNVLCSNLCTEITLNISKDEVAVCNLGSINLAAHLTENGLDY 598 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 DKLA+TI TAVR+LDNVID+N + I+KA+ SN HR IGLGLMGFQSALH L IPY S E Sbjct: 599 DKLANTIHTAVRMLDNVIDVNRYAIKKAENSNRKHRPIGLGLMGFQSALHALRIPYESVE 658 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 AV+ AD+SMEFISFHAISAS LA+ERG YS+FKGSLW +G+ PIDS+ LL EVRD+ + Sbjct: 659 AVDFADQSMEFISFHAISASTNLAEERGPYSTFKGSLWSKGILPIDSLQLLEEVRDKCEI 718 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +++SRL WD L++RVK++GMRNSNCMAIAPTATI+NICGVSQSI+PSYQNL+VKSNMSGD Sbjct: 719 DKSSRLGWDVLRERVKSVGMRNSNCMAIAPTATISNICGVSQSIEPSYQNLFVKSNMSGD 778 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FT+VNS LVN+LK R LWDE MISDLK++DGSIGNIERIP+DLKK+HATAFEIDP+WLI+ Sbjct: 779 FTIVNSCLVNDLKARGLWDEVMISDLKHYDGSIGNIERIPEDLKKLHATAFEIDPIWLIK 838 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +ASRRQKWIDQAQSLNLYL +PSGKKLDFIYRQ+WLMGLKTTYYLRSRSAT VEKSTLK Sbjct: 839 AASRRQKWIDQAQSLNLYLSDPSGKKLDFIYRQSWLMGLKTTYYLRSRSATHVEKSTLKE 898 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 VDGKLN+VP+ D NSS SSC S ECEVCQ Sbjct: 899 VDGKLNSVPIMDHNSSELLSTPQSSCDSGVECEVCQ 934 >gi|299065647|emb|CBJ36819.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum CMR15] Length = 987 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 551/988 (55%), Positives = 685/988 (69%), Gaps = 48/988 (4%) Query: 5 KDVNKGDEDAFPSLAYPFPEKI--KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 + P+ ++I+RNG V F+PSKI+ A+ KAF+AV G Sbjct: 10 SGTANPTAFSQPAEGTAVASGAGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT+ V LL+ + HIED+QDQVE +LM+SG H + R YVLYR Sbjct: 70 AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E RS RA + P L + D G + L ++ AC+ L + V + + Sbjct: 130 ERRSQERAQAGET-QQQPAFIGLNVT-DGGITRPLDMAALRNLIVSACADLGESVDPEPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L ET KN+Y+G+ S + + I ++RTLIEK+P Y++ TAR LL +RRE+L + Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + T EM Y +YF ++I+ G+ A LL + + FDL L L RD F YLGLQ L Sbjct: 242 EVTQAEMAGRYADYFPQFIKRGINAGLLDDKLAQFDLAKLGAALDASRDLQFNYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI+ RIEMPQAFFMRVAMGL+L E ++E RAVEFY LLSSF FM STPTLFNS Sbjct: 302 YDRYFLHISEKRIEMPQAFFMRVAMGLSLNEIDREARAVEFYQLLSSFDFMSSTPTLFNS 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV + WTLFSP DLHD G+ FE AY YE + RGEIK+F+K+ Sbjct: 482 ANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGRAFEAAYLGYEEKVARGEIKLFKKMP 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCN Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601 Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGS+NL+AH D+DKL T+RTA+R+LDNVIDIN + ++KA+ SN HR + Sbjct: 602 LGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPV 661 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+MGFQ +LH+L IPYA+ AV+ AD SME + ++A AS ELA+ERG YS++KGSLW Sbjct: 662 GLGIMGFQDSLHVLRIPYATDAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D+GV P DS+ LLA+ R L + +S + WD L+ R++ GMRNSNC+AIAPTATI+NI Sbjct: 722 DRGVLPQDSLKLLAQERGGYLEADLSSTMDWDGLRARIQQHGMRNSNCVAIAPTATISNI 781 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I+ Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGK LD Y+ AWL Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932 GLKTTYYLR+ AT VEKST+ G LNAV Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDVGSVAAAGAAPVASASALDSVAAT 959 Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 960 APAMPEAEGAVCTMRPGDPGFEECEACQ 987 >gi|94312019|ref|YP_585229.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus metallidurans CH34] gi|93355871|gb|ABF09960.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus metallidurans CH34] Length = 979 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 554/953 (58%), Positives = 694/953 (72%), Gaps = 34/953 (3%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + ++I+RNG V SF+P+KI+ A+ KAF+AV G + S RV++I++ LT+ V L++ Sbjct: 36 QDYKLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRS 95 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP--K 144 + HIED+QD VE +LM+SG H++ R YVLYRE+R+ RA + Sbjct: 96 RPNGGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERAQANAQAVARVQEAGVS 155 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 + D+G + L +++ ACSGL + VS++ +L ET KN+YDG+ + + + I Sbjct: 156 FNVT-DNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAI 214 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++RTLIEK+P Y++VTAR LL +R+E+L + T EM Y EYF ++I G Sbjct: 215 LAARTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARG 268 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++A LL E + +DL L L RDF F YLGLQ LYDRYFLH++ RIEMPQAFFMR Sbjct: 269 IEAELLDEKLATYDLARLGAALDASRDFQFNYLGLQTLYDRYFLHVDEVRIEMPQAFFMR 328 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VAMGLAL+E ++E RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI Sbjct: 329 VAMGLALEEKDREARAIEFYQLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVSDDLEGI 388 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGK Sbjct: 389 YEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGK 448 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFS Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P DLHD GK FE AY YE +A GE+K+F+K+ A+ LWRKML MLFETGHPWITF Sbjct: 509 PASCPDLHDKVGKAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITF 568 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DY 618 KDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+ Sbjct: 569 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDH 628 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL TIRTA+R+LDNVIDIN + +EKA+ SN HR +G+G+MGFQ LH+L PYAS Sbjct: 629 AKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDA 688 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELA 737 AV+ AD SME + ++A AS ELA+ERG YS+++GSLWD+G+ P DS+ LLAE R L Sbjct: 689 AVKFADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLD 748 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ +S + WD L+ R+K GMRNSNC+AIAPTATI+NI GVS I+P++QNLYVKSN+SG Sbjct: 749 VDLSSTMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 808 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FTVVN +LV +LK+R LWDE M++DLKY DGS+ I+RIP DL+ I+ATAFE++P WL+ Sbjct: 809 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLV 868 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ +AT VEKST++ Sbjct: 869 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLRTMAATHVEKSTVQ 928 Query: 918 GVDGKLNAVPVTDPNSST----------HSLGIPSSCTSDT------ECEVCQ 954 G LNAV S + CT ECE CQ Sbjct: 929 R--GSLNAVSSGADGQSGIDAAASAAPAMPEAEGAVCTMRPGDPGFEECEACQ 979 >gi|17547524|ref|NP_520926.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia solanacearum GMI1000] gi|17429828|emb|CAD16512.1| putative ribonucleoside reductase 1 (large chain) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 987 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 553/988 (55%), Positives = 688/988 (69%), Gaps = 48/988 (4%) Query: 5 KDVNKGDEDAFPSLAYPFPEKI--KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 + P+ ++I+RNG V F+PSKI+ A+ KAF+AV G Sbjct: 10 SGTANPTAFSQPAEGTAVASGAGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT+ V LL+ + HIED+QDQVE +LM+SG H + R YVLYR Sbjct: 70 AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E RS RA + P L + D G + L ++ AC+GL + V + + Sbjct: 130 ERRSQERAQAGET-QQQPAFIGLNVT-DGGITRPLDMAALRNLIVSACAGLGESVDPEPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L ET KN+Y+G+ S + + I ++RTLIEK+P Y++ TAR LL +RRE+L + Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + T EM Y +YF ++I+ G+ A LL +++ FDL L L RD F YLGLQ L Sbjct: 242 EVTQAEMAGRYADYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI+ RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFNS Sbjct: 302 YDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLFNS 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV + WTLFSP DLHD GK FE AY YE + RGEIK+F+K+ Sbjct: 482 ANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKVGKAFEAAYLGYEDKVARGEIKLFKKMP 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCN Sbjct: 542 ALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601 Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGS+NL+AH D+DKL T+RTA+R+LDNVIDIN + ++KA+ SN HR + Sbjct: 602 LGSVNLVAHVVKQADGSYALDHDKLKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPV 661 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+MGFQ ALH+L IPYA+ AV+ AD SME + ++A AS ELA+ERG YS++KGSLW Sbjct: 662 GLGIMGFQDALHVLRIPYATDAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D+GV P DS+ LLA+ R L + +S + WD L++R++ GMRNSNC+AIAPTATI+NI Sbjct: 722 DRGVLPQDSLKLLAQERGGYLEADLSSTMDWDGLRERIQQHGMRNSNCVAIAPTATISNI 781 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I+ Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGK LD Y+ AWL Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932 GLKTTYYLR+ AT VEKST+ G LNAV Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDAGSVAAAGAAPVAPASALDTVAAT 959 Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 960 APAMPDAEGAVCTMRPGDPGFEECEACQ 987 >gi|255019899|ref|ZP_05291974.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Acidithiobacillus caldus ATCC 51756] gi|254970679|gb|EET28166.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Acidithiobacillus caldus ATCC 51756] Length = 945 Score = 976 bits (2522), Expect = 0.0, Method: Composition-based stats. Identities = 566/960 (58%), Positives = 701/960 (73%), Gaps = 40/960 (4%) Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 + S A + +VI+RNG V FD SKI A+ KAF+AV+G + S RV+D++ Sbjct: 7 SAQSEALEVRADLGRYRVIRRNGSVVPFDASKIQVAMTKAFLAVDGGTGAASARVRDLVG 66 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT Q V L + +HIEDIQDQVE +LM++G H++ R YVLYREER+ RA + Sbjct: 67 RLTAQVVETLERRQPGGGTLHIEDIQDQVELALMRAGEHEVARAYVLYREERARERAQKR 126 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192 + AP L++ DG+ + +RL ++ EACSGL + VS +L T +N+YDG Sbjct: 127 EASP--ASAPILRVRHADGSEQPLDLERLRQVIGEACSGLGEAVSVDAILQATQRNLYDG 184 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +SE +L A I + R LIE++P YA TAR LL+++RREVL + ATH EM Y Sbjct: 185 ISEEELFQAPILACRVLIEQDPAYAHATARLLLDRVRREVLG------EPATHAEMAQRY 238 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 PEYF Y+ G++ LL + FDL +A L+ ERD F+YLGLQILYDRYFLH+ Sbjct: 239 PEYFKDYLRTGIQHELLDPRLAQFDLDRIAAALRPERDLDFQYLGLQILYDRYFLHVRER 298 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQAF+MRVAMGLAL+E ++E++A+ FY +LS F F+ STPTLFN+GT PQLSSCF Sbjct: 299 RIELPQAFWMRVAMGLALEEIDREEQAIAFYEVLSRFEFVSSTPTLFNAGTLRPQLSSCF 358 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTV DDL GI+ A+++NA+L+KYSGGLGNDWTPVR LG++I GTNGKSQGV+PFLKV N Sbjct: 359 LTTVADDLDGIYEAIKDNALLSKYSGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVN 418 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+R Sbjct: 419 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMER 478 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N WTLFSP+EV+DLHDL G+ F+ YE+YER AD GEI +F+++ A+ LWRKMLTM Sbjct: 479 VEANGQWTLFSPNEVADLHDLTGQAFKERYEHYERLADAGEITLFKRLPALQLWRKMLTM 538 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGS+NL+AH Sbjct: 539 LFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDKEIAVCNLGSVNLVAHLR 598 Query: 613 NNQF-----------------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 D DKLA T+R A+R+LDNVID+N + + KA+ SN HR Sbjct: 599 AGLPGQGLRTEASADELLALVDTDKLARTVRVAMRMLDNVIDMNYYAVAKARNSNLRHRP 658 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLGLMGF AL L IPYAS AVE AD S E IS+HAI AS +LA+ERG+Y SF GSL Sbjct: 659 VGLGLMGFSDALLALRIPYASQAAVEFADISQELISYHAIDASADLARERGSYRSFPGSL 718 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W QG+ P+DSI LLA R + ++R+ RL W+ L+ +V GMRNSNC+AIAPTATI+N Sbjct: 719 WSQGILPLDSIELLARSRVAGVDVDRSQRLDWESLRTKV-KGGMRNSNCLAIAPTATISN 777 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVSQ I+P YQNLYVKSN+SG+FTVVN++LV +LK DLWDE M++DLKY DGS+ I Sbjct: 778 IVGVSQGIEPIYQNLYVKSNLSGEFTVVNAYLVRDLKAADLWDEVMVNDLKYFDGSVVPI 837 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +RIP+ LK ++A AFEIDP WL+E+A+RRQKW+DQ+QSLNLY +PSGKK+D YR AW Sbjct: 838 DRIPEALKPLYANAFEIDPQWLVEAAARRQKWLDQSQSLNLYFGQPSGKKIDETYRLAWR 897 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 GLKTTYYLRS AT+ EKST+ G LNAVP + + D CE CQ Sbjct: 898 RGLKTTYYLRSLGATAAEKSTV--SKGVLNAVPGQ----------VKACAIEDPGCEACQ 945 >gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1306 Score = 975 bits (2521), Expect = 0.0, Method: Composition-based stats. Identities = 533/928 (57%), Positives = 680/928 (73%), Gaps = 13/928 (1%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 P Q+I+RNG V F+P+KI+ A+MKAF+AV G + S V++ + L Sbjct: 37 PGSESTVTNAFAQYQIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQGAASASVRETVDGL 96 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 T+Q + L++ HIED+QDQVE LM+ GHH+I R YVLYRE R+ RA Sbjct: 97 TQQVIRALVRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARAYVLYRERRTQERA--KQV 154 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLS 194 ++AP AP + ++ D+G + + +L+ +E ACSGL DV + +L+ET +N+YDG+ Sbjct: 155 ATEAPAAPVIHVI-DNGQRVPLDLAQLQFRIETACSGLGADVKAAPILAETMRNLYDGVP 213 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 ++ A I ++RTLIEK+P+Y TAR L + REVL + +MQ Y + Sbjct: 214 LDEVYKAAILAARTLIEKDPDYTYATARLLFHTISREVLG------RDVAQADMQEAYAD 267 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 YF +I+ G+ A LL E + FDL L + LK RD F+YLGLQ LYDRYFLH +RI Sbjct: 268 YFPGFIKRGIAAELLDEKLQQFDLKRLGSALKAGRDLQFDYLGLQTLYDRYFLHEGKTRI 327 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+LT Sbjct: 328 ELPQAFFMRVAMGLSLNEIDREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLT 387 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI GTNG+SQGV+PFLKV NDT Sbjct: 388 TVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGESQGVVPFLKVVNDT 447 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV Sbjct: 448 AVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVM 507 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + WTLFSP V DLHDL+G EFE AY YE +A RGEIK R + A LWRKMLTMLF Sbjct: 508 EKGTWTLFSPSNVPDLHDLFGAEFEKAYVAYEEKAARGEIKPSRTVQASDLWRKMLTMLF 567 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NLL H + Sbjct: 568 ETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLLQHLKDG 627 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D++KL TI TA+R+LDNVIDIN + ++KA+ SN HR +GLGLM FQ +L+ L IPY Sbjct: 628 ALDHNKLKRTISTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGLMAFQDSLYELRIPY 687 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 AS AVE AD+SME IS++A AS +LA+ERG Y S+KGSLWD+GV P D++ +LA R Sbjct: 688 ASDAAVEFADQSMEAISYYAYWASTDLARERGKYHSYKGSLWDKGVLPPDTLDMLANARG 747 Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++R+S L W+ L+ ++ GMRNSNC+AIAPTATI+NI GV SI+P + NL VKS Sbjct: 748 GYVEVDRSSTLDWNALRNKIAADGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKS 807 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 N+SG+FTV+NS+LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K+++ATAFE++ Sbjct: 808 NLSGEFTVINSYLVRDLKRLGLWDDVMVMDLKHFDGSLSPIDRVPQEIKQLYATAFEVET 867 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ SAT EK Sbjct: 868 RWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTMSATHAEK 927 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIP 941 ST+ G+LNAV + + + Sbjct: 928 STV--TAGRLNAVSSGNDAQGSTKMSSA 953 >gi|291615086|ref|YP_003525243.1| ribonucleoside-diphosphate reductase, subunit alpha [Sideroxydans lithotrophicus ES-1] gi|291585198|gb|ADE12856.1| ribonucleoside-diphosphate reductase, alpha subunit [Sideroxydans lithotrophicus ES-1] Length = 946 Score = 975 bits (2521), Expect = 0.0, Method: Composition-based stats. Identities = 543/941 (57%), Positives = 682/941 (72%), Gaps = 24/941 (2%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 + +VI+RNG V SF+PSKIS A+ KAF+AV G + S RV+++++ LT V+ L++ Sbjct: 18 LDQYKVIRRNGSVVSFEPSKISIAVTKAFIAVNGGQGAASARVRELVEQLTANVVSALIR 77 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 +HIEDIQDQVE SLM+SG H + R YVLYRE+R+ R+ AP Sbjct: 78 RQPHGGTLHIEDIQDQVELSLMRSGEHDVARSYVLYREQRTRERSKGKKEIDAAPALN-- 135 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204 + D + +L ++ AC GL V + +L T K++YDG++ ++ I Sbjct: 136 --IKDGDVTRPLDVVQLSAQIQSACVGLGGAVDADKILKLTLKDLYDGVAVEEVRKCAIL 193 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S+RTLIE++P Y+ VTAR LL + E+L + + +M Y EYF ++I+ G+ Sbjct: 194 SARTLIEQDPAYSFVTARLLLNNICCEILG------GQVSQADMAERYAEYFPKFIKRGI 247 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 +A LL+E + FDL LA L RD F YLGLQ LYDRYFLH++G RIE+PQAFFMRV Sbjct: 248 EAELLNEELGHFDLDRLAGALDSSRDLQFNYLGLQTLYDRYFLHVDGQRIELPQAFFMRV 307 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGL+L E +E+RA+EFY LLSSF FM STPTLFNSGTR QLSSC+LTTV DDL GI+ Sbjct: 308 AMGLSLNEINREERAIEFYRLLSSFDFMSSTPTLFNSGTRRSQLSSCYLTTVADDLDGIY 367 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKR Sbjct: 368 EALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKR 427 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT+NWIPDLFMKRV + WTLFSP Sbjct: 428 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFSP 487 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DLHD +G EFE AY YE + GE+K+F+K+ A +LWRKMLTMLFETGHPWITFK Sbjct: 488 STCPDLHDKFGAEFEKAYTAYEAKVASGELKLFKKVPAQSLWRKMLTMLFETGHPWITFK 547 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA------HFANNQFDY 618 DPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL A H Q D+ Sbjct: 548 DPCNIRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLAAHLFPKGHAKAGQIDH 607 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 DKL T+ TA+R+LDNVIDIN + + KA+ SN HR +GLG+MGFQ LH L IPY+S Sbjct: 608 DKLKRTVSTAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHDLRIPYSSDA 667 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELA 737 A+E AD SME + ++A AS +LA ERG Y+S++GSLWD+G+ P DS+ LL E R + Sbjct: 668 AIEFADRSMEAVCYYAYWASTDLAAERGRYASYRGSLWDKGILPQDSLNLLLEQRGGYVE 727 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++ +S L WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQN++VKSN+SG Sbjct: 728 VDMSSNLDWDALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIEPTYQNIFVKSNLSG 787 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FTV+N LVN+LK LWDE MI+DLKY DGS+ I+RIP +L++++ATAFE++P WLI Sbjct: 788 EFTVINDHLVNDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRELYATAFEVEPKWLI 847 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E+ASRRQKWIDQAQSLN+Y+ SG+KLD Y+ AWL GLKTTYYLR+ ATS EKST + Sbjct: 848 EAASRRQKWIDQAQSLNIYMSGVSGRKLDETYKLAWLRGLKTTYYLRALGATSAEKSTSR 907 Query: 918 GVDGKLNAVPV----TDPNSSTHSLGIPSSCTSDTECEVCQ 954 G LNAV + ++S + ECE CQ Sbjct: 908 A--GSLNAVSSGGGAGEMSASPVVEEAKFCSIDNPECEACQ 946 >gi|91785258|ref|YP_560464.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia xenovorans LB400] gi|91689212|gb|ABE32412.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans LB400] Length = 1001 Score = 975 bits (2519), Expect = 0.0, Method: Composition-based stats. Identities = 547/918 (59%), Positives = 679/918 (73%), Gaps = 23/918 (2%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 +G + P + +VI+RNG V SF+PSKI+ A+ KAF+AV G + S Sbjct: 21 GQAQGAQALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 75 ARVRELVEQLTQNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 + R H P L + D+G + L I+E ACS L D VS+ +++E Sbjct: 135 TQAR---GHDDQIVANTPGLNVT-DNGVTRPLDMAALRGIIELACSNLGDAVSADPIIAE 190 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ T Sbjct: 191 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 244 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 EM Y EYF ++I+ GV+A LL + ++ FDL L L RD F YLGLQ LYDR Sbjct: 245 QTEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDNNRDLQFGYLGLQTLYDR 304 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH +G RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LS+F FM STPTLFNSGTR Sbjct: 305 YFLHHDGVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSTFDFMSSTPTLFNSGTR 364 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV Sbjct: 365 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 424 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 425 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANW 484 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI A Sbjct: 485 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQ 544 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS Sbjct: 545 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 604 Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH D+DKL T+ A+R+LDNVIDIN + + KA+ SN HR +G+G Sbjct: 605 VNLVAHLKEQADGTLVLDHDKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMG 664 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ LHLL PYAS EAV AD SME + ++A AS ELAQERG YSS++GSLWD+G Sbjct: 665 IMGFQDCLHLLRTPYASEEAVRFADTSMEAVCYYAYYASTELAQERGRYSSYRGSLWDRG 724 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P DS+ LLAE R + ++ + + W EL+ R+ GMRNSNC+AIAPTATI+NI GV Sbjct: 725 ILPQDSVKLLAEARGGYVEVDSSESMDWTELRSRIAQYGMRNSNCVAIAPTATISNIIGV 784 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++QNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+RIP Sbjct: 785 SACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 844 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AW+ GLK Sbjct: 845 ADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEIYKLAWVRGLK 904 Query: 899 TTYYLRSRSATSVEKSTL 916 TTYYLR+ +AT VEKST+ Sbjct: 905 TTYYLRTMAATHVEKSTV 922 >gi|307546479|ref|YP_003898958.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] gi|307218503|emb|CBV43773.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] Length = 968 Score = 974 bits (2517), Expect = 0.0, Method: Composition-based stats. Identities = 536/965 (55%), Positives = 681/965 (70%), Gaps = 32/965 (3%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 PS++ P + ++VIKR G V FD KI+ A+ KAF+AVEG A+ S RV+D ++ Sbjct: 10 PSVSVTAP---QTLRVIKRTGDVVPFDSGKIAVALSKAFIAVEGDNAATSSRVRDFVQRA 66 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 +E L+ +HIEDIQDQVE +LM++G K+ R YVLYREE + RA Sbjct: 67 SENIEQAFLRRMPDGGTLHIEDIQDQVELALMRAGEQKVARAYVLYREEHARARAESGAD 126 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + P L + DG+ + R+E +V +AC L +V ++ ++ KN+YDG++ Sbjct: 127 ITK--PHPTLNVTAPDGSTRPLDLGRVETLVFDACENLANVEPGKIVEDSLKNLYDGVTV 184 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 + AL+ ++RTL+EK+PNY VTAR L + LRRE L + ++AT+ EM Y Sbjct: 185 DGVSQALMMTARTLVEKDPNYTYVTARLLQDNLRREAL-SFLGIAEEATYQEMADYYKPA 243 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F YI +G++ L + +FDL L + L + RD F YLGLQ LYDRYF+H + R E Sbjct: 244 FQAYIAKGIEFEQLDPRLAEFDLERLGDALDHTRDAQFTYLGLQTLYDRYFIHRDEVRYE 303 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FMRVAMGLAL E ++E RA+EFY LLSSF +M STPTLFNSGT QLSSC+LTT Sbjct: 304 LPQVMFMRVAMGLALNEDDREARAIEFYELLSSFDYMASTPTLFNSGTVRSQLSSCYLTT 363 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPDDL I+ A+++NA+L+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTA Sbjct: 364 VPDDLDNIYSAIRDNALLSKWAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTA 423 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKRV Sbjct: 424 VAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFD 483 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + WTLFSP DLHDLYG FE Y+ YE G++K+F+++ A LWR+ML+MLFE Sbjct: 484 DGEWTLFSPATCPDLHDLYGAAFEKRYQEYEEMTRNGQLKLFKRVRAKDLWRRMLSMLFE 543 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL H + Q Sbjct: 544 TGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSINLAQHVTDGQ 603 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD DKL T++TAVR+LDNVIDIN + + +A++SN HR +GLG+MGFQ AL+ I YA Sbjct: 604 FDGDKLKKTVKTAVRMLDNVIDINYYAVPQAERSNFKHRPVGLGIMGFQDALYAQDIAYA 663 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734 S EAV AD SME +S+HAI AS +LA ERG Y S++GSLW QG+ PIDSI L + R Sbjct: 664 SDEAVAFADTSMELVSYHAIEASSDLAAERGHYESYEGSLWSQGILPIDSIEKLKQERGE 723 Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++ ++ WD +++++ GMRNSN MAIAPTATI+NICGVSQSI+P+YQNL+VKS Sbjct: 724 KYIEVDTSTTQDWDRIREKIAVQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLFVKS 783 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 N+SG+FTVVN+++VN+LK+R LWDE MI+DLKY+DGS+ I+R+P+DLK +ATAFE +P Sbjct: 784 NLSGEFTVVNAYMVNDLKERGLWDEVMINDLKYYDGSVQAIDRVPEDLKAKYATAFETEP 843 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 WL+E+A+RRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ ATSVEK Sbjct: 844 KWLVEAAARRQKWIDQAQSLNLYIQGVSGKKLDVTYRMAWFRGLKTTYYLRALGATSVEK 903 Query: 914 STLKG-----------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDT-E 949 ST+ + V S PS+ D Sbjct: 904 STVDRGNLNAVSNASPSTAPAPAPEATPQAQEPRGVDDFLKGKSGSGSRAPSAGEIDELG 963 Query: 950 CEVCQ 954 CE CQ Sbjct: 964 CEACQ 968 >gi|119478321|ref|ZP_01618352.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2143] gi|119448661|gb|EAW29906.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma proteobacterium HTCC2143] Length = 962 Score = 974 bits (2517), Expect = 0.0, Method: Composition-based stats. Identities = 552/941 (58%), Positives = 696/941 (73%), Gaps = 8/941 (0%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 L P + V+VIKRNG V S+D SKI+ AI KAF+AVEG A+ S R+ + ++ L+ Sbjct: 27 ELQATAPGQ---VRVIKRNGTVVSYDDSKIAVAITKAFLAVEGGSAAASSRIHETVEKLS 83 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 Q + S +HIEDIQDQVE +LM+SG HK+ R+YVLYREER + + Sbjct: 84 LQVSAIFKRRMPSGGTIHIEDIQDQVELALMRSGEHKVARDYVLYREERRLQ-REEKKAS 142 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P +++ + DG+ + + R+E++V EAC GL DV +++++ E KN+YDG+ + Sbjct: 143 EPTKAHPTIRVTLSDGSQVPLDLGRMEVVVSEACDGLADVKAQVIIDEALKNLYDGVPIA 202 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T+L+ +SRTL+EKEPNY+ VTAR LL+ LR E L AT EM LY + Sbjct: 203 DVNTSLVITSRTLVEKEPNYSYVTARLLLDNLRAEALP-FLGIANSATQSEMASLYAKAL 261 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 YI +G++ LL +++D+DL L L RD F YLGLQ LYDRYF+H N RIE+ Sbjct: 262 PAYINKGIELELLAPNLLDYDLDKLGQALDANRDQLFNYLGLQTLYDRYFIHSNDIRIEL 321 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRVAMGLA +E +E RA+EFY LLSSF +M STPTLFN+GT PQLSSC+LTTV Sbjct: 322 PQIFFMRVAMGLAYREENREDRAIEFYRLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTV 381 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PDDL+GI+GA+Q+NAML+K++GGLGNDWTPVR LGA+I GTNGKSQGV+PFLKV NDTAV Sbjct: 382 PDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRALGAYIKGTNGKSQGVVPFLKVVNDTAV 441 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW+PDLFMKRV + Sbjct: 442 AVNQGGKRKGAVCAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDD 501 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSP++V DLHDLYG+ FE Y YE Q G++K+F+ + A LWRKML MLFET Sbjct: 502 GEWTLFSPNDVPDLHDLYGEAFETRYTEYEAQCKSGDMKLFKTVRAQELWRKMLGMLFET 561 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGS+NL H + N Sbjct: 562 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSVNLAQHVSENGL 621 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D KL TI TAVR+LDNVIDIN +++ +A+ SN HR +GLGLMGFQ AL+ H+ Y S Sbjct: 622 DLSKLEKTITTAVRMLDNVIDINYYSVGQAETSNMRHRPVGLGLMGFQDALYNQHMAYGS 681 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-- 734 +AVE AD SME IS+ AI AS LA+ERG+YS+F+GSLW QG+ PIDS+ L R Sbjct: 682 DQAVEFADRSMEAISYFAIQASSALAEERGSYSTFEGSLWSQGILPIDSVKTLIAERGND 741 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + ++++ L W L+ RV+ GMRNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN Sbjct: 742 YIDVDQSQTLDWSSLRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSN 801 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTVVN LV +LK R LWD M++DLKY++GS+ NI+R+P ++K+++ATAFE++P Sbjct: 802 LSGEFTVVNPHLVKDLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEPR 861 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +AT EKS Sbjct: 862 WIVDAASRRQKWIDQAQSLNLYISGASGKKLDITYRMAWYKGLKTTYYLRALAATGTEKS 921 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 T+ + P ++ +P +C+ D +CE CQ Sbjct: 922 TIDTGSLNAVSSKTEAPVAAAGPAPVPEACSLDDPDCEACQ 962 >gi|167574514|ref|ZP_02367388.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia oklahomensis C6786] Length = 944 Score = 974 bits (2517), Expect = 0.0, Method: Composition-based stats. Identities = 550/943 (58%), Positives = 691/943 (73%), Gaps = 23/943 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V LL+ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + + A + + D+G + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAADVETSAAGGINVT-DNGVTRPLDMSALHALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 ++SET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVSETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPVLRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRVPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 L GLKTTYYLR+ +AT VEKST+ G LNAVP + +S Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGSSGGA 944 >gi|167721299|ref|ZP_02404535.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei DM98] Length = 942 Score = 974 bits (2517), Expect = 0.0, Method: Composition-based stats. Identities = 550/940 (58%), Positives = 693/940 (73%), Gaps = 23/940 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A ++A A + + D+G + + L ++ AC GL + VS + Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGNAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 L GLKTTYYLR+ +AT VEKST+ G LNAVP + S Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTSGGTS 941 >gi|325528899|gb|EGD05935.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia sp. TJI49] Length = 963 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 545/937 (58%), Positives = 678/937 (72%), Gaps = 25/937 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G P + +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLGGAAQGAPALAPQATF------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV++++ LT V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVDQLTHNVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVRA---AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VS 177 RE+R R ++ + ++ D+G + L +V AC GL V+ Sbjct: 131 REKRHLERQHAGEEAAVAGGEAAGGVINVV-DNGVTRPLDLNALRALVVSACDGLGAAVN 189 Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237 +++ET KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PDPIVAETVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG--- 246 Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297 ++ EM Y EYF ++++ GV A LL + ++ FDL L + L RD F YLG Sbjct: 247 ---EEVVQAEMSTRYAEYFPQFLKRGVDAGLLDDKLLQFDLKRLGDALDASRDLQFGYLG 303 Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 LQ LYDRYFLH+ G+RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPT Sbjct: 304 LQTLYDRYFLHVGGTRIEMPQAFFMRVAMGLSLNEIDRETRAIEFYNVLSSFDFMSSTPT 363 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 LFNSGT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GT Sbjct: 364 LFNSGTHRSQLSSCYLTTVADDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGT 423 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 NGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTH Sbjct: 424 NGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTH 483 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 DMNTANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F Sbjct: 484 DMNTANWIPDLFMKRVMEGGEWTLFSPSTCPDLHDKFGAEFEAAYTAYEEKVARGEIKLF 543 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 +KI A LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S E Sbjct: 544 KKIPAQQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTEI 603 Query: 598 AVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 AVCNLGS+NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN Sbjct: 604 AVCNLGSVNLVAHLVKQADGSYALDHDKLKRTISVAMRMLDNVIDINYYAVPKARNSNLK 663 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 HR +G+G+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++ Sbjct: 664 HRPVGMGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYR 723 Query: 713 GSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GSLWD+G+ P D++ LLAE R + ++ + L W L+ R+ GMRNSNC+AIAPTAT Sbjct: 724 GSLWDRGILPQDTLKLLAEARGGYVEVDSSESLDWTALRARIAAHGMRNSNCVAIAPTAT 783 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 ISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGML 843 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ Sbjct: 844 SRIDRIPADLRAIYATAFEVDPTWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKL 903 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 AWL GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 AWLRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPT 938 >gi|83746811|ref|ZP_00943859.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia solanacearum UW551] gi|207744362|ref|YP_002260754.1| ribonucleoside reductase 1 (large chain) (partial sequence n terminus) protein [Ralstonia solanacearum IPO1609] gi|83726580|gb|EAP73710.1| Ribonucleoside-diphosphate reductase alpha chain [Ralstonia solanacearum UW551] gi|206595767|emb|CAQ62694.1| ribonucleoside reductase 1 (large chain) (partial sequence n terminus) protein [Ralstonia solanacearum IPO1609] Length = 987 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 551/988 (55%), Positives = 688/988 (69%), Gaps = 48/988 (4%) Query: 5 KDVNKGDEDAFPSLAYPFPEK--IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 + P+ ++I+RNG V F+PSKI+ A+ KAF+AV G Sbjct: 10 SGTANPTAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT+ V LL+ + HIED+QDQVE +LM+SG H + R YVLYR Sbjct: 70 AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E RS RA ++ P L + D G + L ++ AC+GL D V + + Sbjct: 130 ERRSQERAQAGETQQP-PAFIGLNVT-DGGITRPLDMVALRNLIVSACAGLGDAVDPEPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L ET KN+Y+G+ S + + I ++RTLIEK+P Y++ TAR LL +RRE+L + Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + T EM Y +YF ++I+ G+ A LL +++ FDL L L RD F YLGLQ L Sbjct: 242 EVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI+ RIEMPQAFFMRVAMGL+L E ++E RA+EFY+LLSSF FM STPTLFNS Sbjct: 302 YDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYHLLSSFDFMSSTPTLFNS 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV +N WTLFSP DLHD G+ FE AY YE + RGEI +F+K+ Sbjct: 482 ANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGRAFEQAYLGYEEKVARGEITLFKKMP 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCN Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601 Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGS+NL+AH D+DKL T+R A+R+LDNVIDIN + ++KA+ SN HR + Sbjct: 602 LGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMRMLDNVIDINYYAVKKARDSNLRHRPV 661 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+MGFQ ALH+L IPYA+ AV+ AD SME + ++A AS ELA+ERG YS++KGSLW Sbjct: 662 GLGVMGFQDALHVLRIPYANEAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D+G+ P DS+ LLA+ R L + +S + WD L+ R++ GMRNSNC+AIAPTATI+NI Sbjct: 722 DRGILPQDSLKLLAQERGGYLEADLSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATISNI 781 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I+ Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGK LD Y+ AWL Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932 GLKTTYYLR+ AT VEKST+ G LNAV Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDAGSVSAAGAAPVAPASALDAVAAT 959 Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 960 APAMPEAEGAVCTMRPGDPGFEECEACQ 987 >gi|167920555|ref|ZP_02507646.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei BCC215] Length = 952 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 551/934 (58%), Positives = 691/934 (73%), Gaps = 23/934 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A ++A A + + D+G + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + +HA AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYHAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 L GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935 >gi|167904348|ref|ZP_02491553.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei NCTC 13177] Length = 956 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 550/936 (58%), Positives = 692/936 (73%), Gaps = 23/936 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A ++A A + + D+G + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRTLDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTS 937 >gi|167912608|ref|ZP_02499699.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 112] Length = 953 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 550/934 (58%), Positives = 691/934 (73%), Gaps = 23/934 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A ++A A + + D+G + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 L GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935 >gi|167740268|ref|ZP_02413042.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 14] gi|167817488|ref|ZP_02449168.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei 91] gi|167847375|ref|ZP_02472883.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia pseudomallei B7210] Length = 954 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 550/934 (58%), Positives = 691/934 (73%), Gaps = 23/934 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPFAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A ++A A + + D+G + + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAEAAEASPAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMTTRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASDEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 L GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVP 935 >gi|89902116|ref|YP_524587.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodoferax ferrireducens T118] gi|89346853|gb|ABD71056.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens T118] Length = 981 Score = 973 bits (2515), Expect = 0.0, Method: Composition-based stats. Identities = 534/984 (54%), Positives = 690/984 (70%), Gaps = 43/984 (4%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 P++ + + + Q+I+RNG V F+P+KI+ A+MKAF+AV G Sbjct: 9 PARHSDVPAVHRMDGIDDTAAHSLSQYQIIRRNGAVVPFEPNKIAVAMMKAFLAVHGTQG 68 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S V++ + LT+ + L++ + HIED+QDQVE LM+ GHH++ R YVLYR Sbjct: 69 AASASVRESVDGLTQGVIHALMRSRPAGGTFHIEDVQDQVELGLMRGGHHEVARAYVLYR 128 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181 E+R+ RA Q + A AP L ++ G ++ + RL+ I+E AC+GL D+ + + Sbjct: 129 EKRTQERAQQ--LIATAATAPLLHVVDKGGRIV-LDLARLKGIIESACAGLGADIKPEPI 185 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L+ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR L + EVL + Sbjct: 186 LAETMRNLYDGVPMEEVYKASILAARTLIEKDPDYTYATARLLFHTIANEVLG------R 239 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 +M Y +YF ++I++G+ LL E + FDL L LK ERD F+YLGLQ L Sbjct: 240 DVVQADMAQAYVDYFPQFIKKGIDHELLDERLQQFDLQRLGAALKAERDLKFDYLGLQTL 299 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLH+ +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STPTLFNS Sbjct: 300 YDRYFLHVGKARIELPQAFFMRVAMGLSLGEIDREARAIEFYEVLSSFDFMSSTPTLFNS 359 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LGAHI GTNG+S Sbjct: 360 GTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGAHIKGTNGES 419 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 420 QGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 479 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANW+PDLFM+RV + WTLFSP+ V DLHD +G +FE AY YE +A RGEI+ R + Sbjct: 480 ANWVPDLFMRRVMEKGQWTLFSPNNVPDLHDKFGADFEKAYVAYEEKAARGEIRPARTVQ 539 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A LWRKMLTMLFETGHPWITFKD CNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCN Sbjct: 540 AADLWRKMLTMLFETGHPWITFKDACNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCN 599 Query: 602 LGSINLLAHFANNQF---------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 LGS+NLL H N D+ KL TI TA+R+LDNVIDIN + ++KA+ +N Sbjct: 600 LGSVNLLQHLKNAPAGSADGAKVLDHAKLQKTITTAMRMLDNVIDINFYAVKKARDANMR 659 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 HR +GLG+M FQ +L+ L IPYAS AV AD SME I ++A AS ELA+ERG Y+S+K Sbjct: 660 HRPVGLGVMAFQDSLYELRIPYASDAAVAFADTSMEAICYYAYWASTELARERGQYTSYK 719 Query: 713 GSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GSLWDQG+ PID++ +LA R + ++R+S L W+ L+K++ GMRNSNC AIAPTAT Sbjct: 720 GSLWDQGILPIDTLDMLARERGGYVEVDRSSTLDWEALRKKIAKDGMRNSNCTAIAPTAT 779 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+NI GV SI+P + NL VKSN+SG+FT++NS+LV +LK+ LWD+ M+ DLK+ DGS+ Sbjct: 780 ISNIIGVDASIEPCFGNLSVKSNLSGEFTIINSYLVQDLKRLGLWDDVMVMDLKHFDGSL 839 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 I+R+P D+K ++ATAFEI+ WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ Sbjct: 840 NPIDRVPADVKALYATAFEIETRWLVEAAARRQKWIDQAQSLNIYMGGASGKKLDDTYKL 899 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN------------------- 932 AW+ GLKTTYYLR+ SAT EKST+ G++NAV + Sbjct: 900 AWIRGLKTTYYLRTMSATHAEKSTV--TAGRMNAVSSGSESAHGGASMSALDAAAATARM 957 Query: 933 --SSTHSLGIPSSCTSDTECEVCQ 954 +S + I D CE CQ Sbjct: 958 QMASGPATDIKFCGVDDPTCESCQ 981 >gi|332286775|ref|YP_004418686.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas sp. T7-7] gi|330430728|gb|AEC22062.1| ribonucleotide-diphosphate reductase subunit alpha [Pusillimonas sp. T7-7] Length = 973 Score = 973 bits (2515), Expect = 0.0, Method: Composition-based stats. Identities = 545/977 (55%), Positives = 695/977 (71%), Gaps = 35/977 (3%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEKI-KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P P+ A +K +I+RNG V F+P KI+ A+ KAF+AV G Sbjct: 7 PESGTAALRHPTTPAPAENSSDKPWNNFHIIRRNGVVVGFEPGKIAIAMTKAFLAVNGGQ 66 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT Q V L+++ S HIE+IQDQVE +LM+SG H + R YVLY Sbjct: 67 GAASARVRELVETLTAQVVNALVRNRPSGGTFHIEEIQDQVELTLMRSGEHDVARAYVLY 126 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKI 180 RE+RS RA QS A + + D+G + RL + EA L ++ ++ Sbjct: 127 REKRSQERA-QSTPAPAATDQTIIHVT-DNGVQCPLDLARLRATITEAGLNLPHNIDAEA 184 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L ET KN+YDG+ ++ + I S+R ++E +P+Y++VTAR LL +R+EVL Sbjct: 185 ILKETVKNIYDGIPVDEVFKSAILSARAMVENDPSYSQVTARLLLHTIRKEVLG------ 238 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ + +M Y EYF ++++ G++ LL E + FDL LA LK ERD F YLGLQ Sbjct: 239 EEVSQSDMATRYAEYFPQFLKAGIEGGLLDEKLAQFDLPKLAAALKAERDLQFNYLGLQT 298 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH+ G RIE+PQ FFMRVAMGLAL E +E+RA+EFY +LSSF FM STPTLFN Sbjct: 299 LYDRYFLHLRGRRIELPQVFFMRVAMGLALNEINREERAIEFYEILSSFDFMSSTPTLFN 358 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+ Sbjct: 359 SGTLHSQLSSCYLTTVSDDLAGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGE 418 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGD+RRRTHDMN Sbjct: 419 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDERRRTHDMN 478 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV +N WTLFSP + DLHD YGK+FE AY YE + RGE+ +F+K+ Sbjct: 479 TANWIPDLFMKRVMENGEWTLFSPSDAPDLHDKYGKDFEEAYLGYEDKVARGELPLFKKV 538 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVC Sbjct: 539 PANMLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVC 598 Query: 601 NLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL AH D++KL TI A+R+LDNVIDIN + + KA+ SN HR Sbjct: 599 NLGSVNLAAHLKQDANGQYVLDHEKLERTIGIAMRMLDNVIDINYYAVPKARNSNVRHRP 658 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +G+G+MGFQ LH++ +P+AS +AVE +D SME ++A AS +LA ERG Y+SFKGSL Sbjct: 659 VGMGVMGFQDCLHMMRVPFASDDAVEFSDRSMEAACYYAYWASSKLAAERGHYASFKGSL 718 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WD+G+ P D++ LL E R + ++ +S L WD L+ +K GMRNSNC+AIAPTATI+N Sbjct: 719 WDRGILPQDTLALLREERGGYVEVDDSSTLDWDSLRAHIKQHGMRNSNCVAIAPTATISN 778 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P+Y+NLYVKSN+SG+FTVVN +LV +LK+R LWDE M+SDLKY DGS+ I Sbjct: 779 IIGVSPCIEPNYRNLYVKSNLSGEFTVVNDYLVRDLKERKLWDEVMVSDLKYFDGSLARI 838 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +RIP DL+K++ATAFE+DP W++E A+RR KWIDQAQSLN+++ SGKKLD IY+ AW+ Sbjct: 839 DRIPADLRKLYATAFEVDPTWVVECAARRSKWIDQAQSLNIFMAGVSGKKLDDIYKLAWV 898 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-----------THSLGIPSS 943 GLKTTYYLRS AT+ EKST +G G+LNAV + + + + Sbjct: 899 RGLKTTYYLRSIGATNAEKSTGRG--GELNAVASGSTSPVAAAAAPAVAALPEAEVLGAV 956 Query: 944 CTSDT------ECEVCQ 954 CT ECE CQ Sbjct: 957 CTMRPGDEGFEECEACQ 973 >gi|300703001|ref|YP_003744603.1| ribonucleoside-diphosphate reductase subunit alpha [Ralstonia solanacearum CFBP2957] gi|299070664|emb|CBJ41959.1| Ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia solanacearum CFBP2957] Length = 987 Score = 973 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 548/962 (56%), Positives = 683/962 (70%), Gaps = 42/962 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 ++I+RNG V F+PSKI+ A+ KAF+AV G + S RV+++++ LT+ V LL+ Sbjct: 34 ADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQGAASARVRELVEGLTQNVVRALLRS 93 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146 + HIED+QDQVE +LM+SG H + R YVLYRE RS RA + P L Sbjct: 94 RPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRSQERAQAGET-QQQPAFIGLN 152 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D G + L ++ AC+GL D V + +L ET KN+Y+G+ S + + I + Sbjct: 153 VT-DGGITRPLDMAALRNLIVSACAGLGDTVDPEPILKETVKNLYEGVPMSQVYDSAILA 211 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +RTLIEK+P Y++ TAR LL +RRE+L ++ T EM Y +YF ++I+ G+ Sbjct: 212 ARTLIEKDPAYSQATARILLHTIRREILG------EEVTQAEMAARYVDYFPQFIKRGIN 265 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 A LL +++ FDL L L RD F YLGLQ LYDRYFLHI+ RIEMPQAFFMRVA Sbjct: 266 AGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTLYDRYFLHISDKRIEMPQAFFMRVA 325 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 MGL+L E ++E RA+EFY LLSSF FM STPTLFNSGT QLSSC+LTTV DDL GI+ Sbjct: 326 MGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLFNSGTCRSQLSSCYLTTVSDDLDGIYE 385 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV NDTAVAVNQGGKRK Sbjct: 386 ALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRK 445 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV +N WTLFSP Sbjct: 446 GAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFSPS 505 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 DLHD G+ FE AY YE + RGEIK+F+K+ A+ LWRKML MLFETGHPWITFKD Sbjct: 506 TCPDLHDKVGRAFEQAYLGYEEKVARGEIKLFKKMPAMQLWRKMLGMLFETGHPWITFKD 565 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDK 620 PCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH D+DK Sbjct: 566 PCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVQQADGSYALDHDK 625 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L T+RTA+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ ALH+L IPYA+ AV Sbjct: 626 LKKTVRTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDALHVLRIPYANDAAV 685 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMN 739 + AD SME + ++A AS ELA+ERG YS++KGSLWD+G+ P DS+ LLA+ R L + Sbjct: 686 QFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLWDRGILPQDSLKLLAQERGGYLETD 745 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +S + WD L+ R++ GMRNSNC+AIAPTATI+NI GVS I+P+YQNLYVKSN+SG+F Sbjct: 746 LSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATISNIIGVSACIEPTYQNLYVKSNLSGEF 805 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 TVVN +LV +LK R LWDE M++DLKY DGS+ I+RIP DL+ ++ATAFE++P WL+E+ Sbjct: 806 TVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPQDLRDLYATAFEVEPQWLVEA 865 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG- 918 ASRRQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ AT VEKST+ Sbjct: 866 ASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLRGLKTTYYLRTIGATHVEKSTVSRG 925 Query: 919 --------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDT------ECEV 952 +A+ + + CT ECE Sbjct: 926 TLNAVSSGSDVGSVSAAGAAPVAPASALDAVAATAPAMPEAEGAVCTMRPGDPGFEECEA 985 Query: 953 CQ 954 CQ Sbjct: 986 CQ 987 >gi|167564162|ref|ZP_02357078.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia oklahomensis EO147] Length = 953 Score = 973 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 549/935 (58%), Positives = 688/935 (73%), Gaps = 23/935 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLAGGAQGAPALASQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V LL+ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQSVVRALLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + + A + + D+G + L ++ AC GL D VS + Sbjct: 131 REKRHLERVHAGEAADVETSAAGGINVT-DNGVTRPLDMSALHALIVSACEGLGDAVSPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 ++SET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVSETVKNLYDGVPMTQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMSMRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + A WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGADWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDTEIAV 603 Query: 600 CNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH A D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGSYALDQEKLKRTVGVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS AVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASEAAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPVLRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+R+P DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRVPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 L GLKTTYYLR+ +AT VEKST+ G LNAVP Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPT 936 >gi|295677727|ref|YP_003606251.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1002] gi|295437570|gb|ADG16740.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderia sp. CCGE1002] Length = 1003 Score = 973 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 560/928 (60%), Positives = 691/928 (74%), Gaps = 24/928 (2%) Query: 6 DVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRS 65 +G + P Y +VI+RNG V SF+PSKI+ A+ KAF+AV G + S Sbjct: 21 GQTQGAQSLAPQANY------ADYKVIRRNGTVVSFEPSKIAIAVTKAFLAVNGGQGAAS 74 Query: 66 IRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREER 125 RV+++++ LT+ V LL+ + HIEDIQDQVE +LM+ G H + R YVLYRE+R Sbjct: 75 ARVRELVEQLTQNVVRSLLRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLYREKR 134 Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSE 184 + RA H +DA P L + D+G + L I+E AC+ L D VS++ +++E Sbjct: 135 NQARAHDDH--ADAASTPGLNVT-DNGITRPLDMAALRGIIESACANLGDAVSAEPIVAE 191 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG+ S + + I ++RT+IEK+P Y++VTAR LL +RRE+L ++ T Sbjct: 192 TVKNLYDGVPMSQVYDSAILAARTMIEKDPAYSQVTARILLHTIRREIL------EEEVT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 EM Y EYF ++I+ GV+A LL + ++ FDL L L RD F YLGLQ LYDR Sbjct: 246 QAEMGERYAEYFPQFIKRGVQAELLDDKLLQFDLKRLGAALDANRDLQFGYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YFLH + RIEMPQAFFMRVAMGL+L E ++E RA+EFYN+LSSF FM STPTLFNSGTR Sbjct: 306 YFLHHDNVRIEMPQAFFMRVAMGLSLNEIDREARAIEFYNVLSSFDFMSSTPTLFNSGTR 365 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV Sbjct: 366 RSQLSSCYLTTVDDDLDGIYEALKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGV 425 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANW Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANW 485 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+KI A Sbjct: 486 IPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFETAYTAYEDKVARGEIKLFKKIPAAQ 545 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS Sbjct: 546 LWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAVCNLGS 605 Query: 605 INLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+AH D+DKL TI A+R+LDNVIDIN + + KA+ SN HR +GLG Sbjct: 606 VNLVAHLKEQADGTVALDHDKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGLG 665 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGFQ LH+L PYASPEAVE AD SME + ++A AS ELA+ERG YSS++GSLWD+G Sbjct: 666 IMGFQDCLHVLRTPYASPEAVEFADRSMEAVCYYAYYASTELAEERGRYSSYRGSLWDRG 725 Query: 720 VFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + P DS+ LLAE R + ++ + + W L+ R+ T GMRNSNC+AIAPTATI+NI GV Sbjct: 726 ILPQDSVALLAEARGGYVEVDSSESMDWPALRSRIATYGMRNSNCVAIAPTATISNIIGV 785 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DG++ I+RIP Sbjct: 786 SACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGTLSRIDRIP 845 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DL+ I+ATAFE+DP+WL+ESASRRQKWIDQAQSLN+Y+ SGKKLD IY+ AWL GLK Sbjct: 846 ADLRAIYATAFEVDPVWLVESASRRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLK 905 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAV 926 TTYYLR+ +AT VEKST+ G LNAV Sbjct: 906 TTYYLRTMAATHVEKSTV--AHGALNAV 931 >gi|207721466|ref|YP_002251906.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia solanacearum MolK2] gi|206586626|emb|CAQ17212.1| ribonucleoside reductase 1 (large chain) protein [Ralstonia solanacearum MolK2] Length = 987 Score = 973 bits (2514), Expect = 0.0, Method: Composition-based stats. Identities = 551/988 (55%), Positives = 687/988 (69%), Gaps = 48/988 (4%) Query: 5 KDVNKGDEDAFPSLAYPFPEK--IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 + P+ ++I+RNG V F+PSKI+ A+ KAF+AV G Sbjct: 10 SGTANPTAFSQPTGGTAVASGDGYADYKIIRRNGAVVGFEPSKIAVAMTKAFLAVNGGQG 69 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S RV+++++ LT+ V LL+ + HIED+QDQVE +LM+SG H + R YVLYR Sbjct: 70 AASARVRELVEGLTQNVVRALLRSRPNGGTFHIEDVQDQVELALMRSGEHDVARAYVLYR 129 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIV 181 E RS RA ++ P L + D G + L ++ AC+GL D V + + Sbjct: 130 ERRSQERAQAGETQQP-PAFIGLNVT-DGGITRPLDMVALRNLIVSACAGLGDAVDPEPI 187 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 L ET KN+Y+G+ S + + I ++RTLIEK+P Y++ TAR LL +RRE+L + Sbjct: 188 LKETVKNLYEGVPMSQVYDSAILAARTLIEKDPAYSQATARILLHTIRREILG------E 241 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 + T EM Y +YF ++I+ G+ A LL +++ FDL L L RD F YLGLQ L Sbjct: 242 EVTQAEMAARYVDYFPQFIKRGINAGLLDDTLAQFDLAKLGAALDASRDLQFNYLGLQTL 301 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYFLHI+ RIEMPQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFNS Sbjct: 302 YDRYFLHISDKRIEMPQAFFMRVAMGLSLNEIDREARAIEFYQLLSSFDFMSSTPTLFNS 361 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 GT QLSSC+LTTV DDL GI+ AL+ENA+L+K++GGLGNDWT VR LG+HI GTNGKS Sbjct: 362 GTCRSQLSSCYLTTVSDDLDGIYEALKENALLSKFAGGLGNDWTNVRALGSHIKGTNGKS 421 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNT Sbjct: 422 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNT 481 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKRV +N WTLFSP DLHD G+ FE AY YE + RGEI +F+K+ Sbjct: 482 ANWIPDLFMKRVMENGEWTLFSPSTCPDLHDKVGRAFEQAYLGYEEKVARGEITLFKKMP 541 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A+ LWRKML MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCN Sbjct: 542 AMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCN 601 Query: 602 LGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 LGS+NL+AH D+DKL T+R A+R+LDNVIDIN + ++KA+ SN HR + Sbjct: 602 LGSVNLVAHLVQQADGSYALDHDKLKKTVRIAMRMLDNVIDINYYAVKKARDSNLRHRPV 661 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+MGFQ ALH+L IPYA+ AV+ AD SME + ++A AS ELA+ERG YS++KGSLW Sbjct: 662 GLGVMGFQDALHVLRIPYANEAAVQFADTSMEAVCYYAYWASTELAEERGRYSTYKGSLW 721 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D+G+ P DS+ LLA+ R L + +S + WD L+ R++ GMRNSNC+AIAPTATI+NI Sbjct: 722 DRGILPQDSLKLLAQERGGYLEADLSSTMDWDSLRGRIQQYGMRNSNCVAIAPTATISNI 781 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVS I+P+YQNLYVKSN+SG+FTVVN +LV +LK R LWDE M++DLKY DGS+ I+ Sbjct: 782 IGVSACIEPTYQNLYVKSNLSGEFTVVNDYLVRDLKARGLWDEVMVADLKYFDGSLARID 841 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP DL+ ++ATAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGK LD Y+ AWL Sbjct: 842 RIPQDLRDLYATAFEVEPQWLVEAASRRQKWIDQAQSLNIYMAGASGKMLDDTYKLAWLR 901 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP-----------------------N 932 GLKTTYYLR+ AT VEKST+ G LNAV Sbjct: 902 GLKTTYYLRTIGATHVEKSTVSR--GTLNAVSSGSDAGSVSAAGAAPVAPASALDAVAAT 959 Query: 933 SSTHSLGIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 960 APAMPEAEGAVCTMRPGDPGFEECEACQ 987 >gi|163854888|ref|YP_001629186.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella petrii DSM 12804] gi|163258616|emb|CAP40915.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella petrii] Length = 974 Score = 972 bits (2513), Expect = 0.0, Method: Composition-based stats. Identities = 537/982 (54%), Positives = 693/982 (70%), Gaps = 39/982 (3%) Query: 3 PSKDVNKGDEDAFPSLAYPFP-----EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57 + + A P P + VI+RNG V F+PSKI+ A+ KAF+AV Sbjct: 2 QTTIASVTRPSAVPPSQTDVPADANGGQWASYNVIRRNGSVVGFEPSKIAIAMTKAFLAV 61 Query: 58 EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117 G + S RV+++++ L Q V L+++ + HIEDIQDQVE +LM+SG H + R Sbjct: 62 NGGQGAASARVRELVETLASQAVNALVRNRPAGGTFHIEDIQDQVELALMRSGEHDVARA 121 Query: 118 YVLYREERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL 173 YVLYRE+R+ RAA + L ++ D+G + L +E A GL Sbjct: 122 YVLYREKRAQERAAAAEVLEKTAPAVAQESHLNVV-DNGVRRPLDLAALRATIEAAGEGL 180 Query: 174 QD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 + + ++ +L ET KN+YDG+ ++ + I S+R L+EK+P Y++VTAR LL +R+EV Sbjct: 181 SEFIDTEAILKETVKNLYDGIPVDEVFKSAILSARALVEKDPAYSQVTARLLLHTIRKEV 240 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 L ++ + M Y EYF +I+ G++ LL + ++DL + L RD Sbjct: 241 LG------EEVSQAGMATRYAEYFPTFIQRGIEGGLLDAKLAEYDLARVGAALDARRDLQ 294 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 F YLGLQ LYDRYFLHI G+RIE+PQ FFMRVAMGLAL+E+++E RA+EFY +LSSF FM Sbjct: 295 FGYLGLQTLYDRYFLHIRGTRIELPQVFFMRVAMGLALRESDREARAIEFYEILSSFDFM 354 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 STPTLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L + Sbjct: 355 SSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRS 414 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+ Sbjct: 415 HIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDE 474 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 RRRTHDMNTANWIPDLFMKRV +N WTLFSP + DLHD YGK FE AY YE + G Sbjct: 475 RRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYLGYEAKVASG 534 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E+K+F+K+ A++LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+ Sbjct: 535 ELKLFKKMPAISLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNT 594 Query: 593 SSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + E AVCNLGS+NL+AH + D+DKL T+ A+R+LDNVIDIN + ++KAK Sbjct: 595 NDSEIAVCNLGSVNLVAHMKPAAAGGFELDHDKLKRTVGIAMRMLDNVIDINYYAVKKAK 654 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 SN HR +G+G+MGFQ L ++ +PYAS AVE AD SME + +HA AS ELAQERG Sbjct: 655 DSNERHRPVGMGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSELAQERGR 714 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 Y S++GSLW +G+ P D++ +L + R + ++ +S L W+ L+ R+K GMRNSNC+AI Sbjct: 715 YPSYEGSLWSRGILPQDTLAMLRDERGGHVEVDESSTLDWNALRARIKEHGMRNSNCIAI 774 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APTATI+NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLKY Sbjct: 775 APTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKY 834 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 DGS+ I+R+P +L++++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKLD Sbjct: 835 FDGSLSRIDRVPSELRELYATAFEVEPRWLVECASRRQKWIDQAQSLNIYMAGASGKKLD 894 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS--------THSL 938 Y+ AW GLKTTYYLR+ ATS EKST +G G+LNAV ++ Sbjct: 895 DTYKLAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGQAATAVTAAAPNLPEPE 952 Query: 939 GIPSSCTSDT------ECEVCQ 954 + + CT ECE CQ Sbjct: 953 VLGAVCTMRPGDPGFEECEACQ 974 >gi|221065169|ref|ZP_03541274.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas testosteroni KF-1] gi|220710192|gb|EED65560.1| ribonucleoside-diphosphate reductase, alpha subunit [Comamonas testosteroni KF-1] Length = 969 Score = 971 bits (2510), Expect = 0.0, Method: Composition-based stats. Identities = 530/968 (54%), Positives = 684/968 (70%), Gaps = 32/968 (3%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71 A P+ A Q+I+R+G V +F P KI+ A+ KAF+AV G + S V+D Sbjct: 9 PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68 Query: 72 IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131 + LT+ V L++ HIED+QDQVE LM++GH + R YVLYRE R+ RA Sbjct: 69 VNELTDGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128 Query: 132 QSHSKSDAP---IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187 Q A P L + D+G + N +RLE ++ +C L D+ S +++ET + Sbjct: 129 QKKVAEVAAAAATKPVLHVT-DNGQRVPLNQERLEALIVASCGNLNADIQSAPIVAETLR 187 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N+YDG+ +++ A I ++RTLIEK+P+Y VTAR LL + REV+ + E Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQPAE 241 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 MQ Y +YF ++++GV LL+ ++++DL LA LK ERD F+YLGLQ LYDRYFL Sbjct: 242 MQAAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H+ +RIE+PQ+FFMRVAMGLAL E ++ RA+EFY LLSSF FM STPTLFNSGT Q Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV + WTLFSP + DLHDLYG+ FE AY YE + D GE+K+F+++ AV LWR Sbjct: 482 LFMKRVMEAGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + H + + D+DKL T+ TA+R+LDNVIDIN + ++KAK SN HR +G+GLMGFQ AL Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + YAS AVE ADE+ME I ++A AS EL++ERG YS+FKGSLWDQG+ P D++ Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721 Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 LL + R + ++R+++L WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAKDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K ++A Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKL Y AWL GLKTTYYLR+ Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901 Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 SAT++EKST++ + + I Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961 Query: 947 DTECEVCQ 954 D CE CQ Sbjct: 962 DPGCEACQ 969 >gi|299533978|ref|ZP_07047330.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas testosteroni S44] gi|298717887|gb|EFI58892.1| ribonucleotide-diphosphate reductase subunit alpha [Comamonas testosteroni S44] Length = 969 Score = 971 bits (2510), Expect = 0.0, Method: Composition-based stats. Identities = 531/968 (54%), Positives = 686/968 (70%), Gaps = 32/968 (3%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71 A P+ A Q+I+R+G V +F P KI+ A+ KAF+AV G + S V+D Sbjct: 9 PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68 Query: 72 IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131 + LTE V L++ HIED+QDQVE LM++GH + R YVLYRE R+ RA Sbjct: 69 VNELTEGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128 Query: 132 QSHSKSDAPIA---PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187 Q + A A P L + D+G + + +RLE ++ +C L D+ S +++ET + Sbjct: 129 QKKAAEVAAAAAAKPVLHVT-DNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLR 187 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N+YDG+ +++ A I ++RTLIEK+P+Y VTAR LL + REV+ + E Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQPAE 241 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 MQ Y +YF ++++GV LL+ ++++DL LA LK ERD F+YLGLQ LYDRYFL Sbjct: 242 MQTAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H+ +RIE+PQ+FFMRVAMGLAL E ++ RA+EFY LLSSF FM STPTLFNSGT Q Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV + WTLFSP + DLHDLYG+ FE AY YE + D GE+K+F+++ AV LWR Sbjct: 482 LFMKRVMEKGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + H + + D+DKL T+ TA+R+LDNVIDIN + ++KAK SN HR +G+GLMGFQ AL Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + YAS AVE ADE+ME I ++A AS EL++ERG YS+FKGSLWDQG+ P D++ Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721 Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 LL + R + ++R+++L WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K ++A Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKL Y AWL GLKTTYYLR+ Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901 Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 SAT++EKST++ + + I Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961 Query: 947 DTECEVCQ 954 D CE CQ Sbjct: 962 DPGCEACQ 969 >gi|264680214|ref|YP_003280124.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni CNB-2] gi|262210730|gb|ACY34828.1| ribonucleoside-diphosphate reductase, alpha [Comamonas testosteroni CNB-2] Length = 969 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 531/968 (54%), Positives = 686/968 (70%), Gaps = 32/968 (3%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71 A P+ A Q+I+R+G V +F P KI+ A+ KAF+AV G + S V+D Sbjct: 9 PSAAPAGAANSSSPNDSYQIIRRSGDVVAFAPQKIAVALTKAFLAVRGAQGAASASVRDT 68 Query: 72 IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131 + LTE V L++ HIED+QDQVE LM++GH + R YVLYRE R+ RA Sbjct: 69 VNELTEGVVRALVRSRPDGGTFHIEDVQDQVELGLMRAGHQDVARAYVLYRERRNQERAE 128 Query: 132 QSHSKSDAPIA---PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYK 187 Q + A A P L + D+G + + +RLE ++ +C L D+ S +++ET + Sbjct: 129 QKKAAEVAAAAAAKPVLHVT-DNGQRVPLDQERLEALIVASCRNLNADIQSAPIVAETLR 187 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N+YDG+ +++ A I ++RTLIEK+P+Y VTAR LL + REV+ + E Sbjct: 188 NLYDGVPLAEVYKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQPAE 241 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 MQ Y +YF ++++GV LL+ ++++DL LA LK ERD F+YLGLQ LYDRYFL Sbjct: 242 MQAAYADYFPGFVQKGVDNELLNPELLNYDLPRLAKALKAERDEQFDYLGLQTLYDRYFL 301 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H+ +RIE+PQ+FFMRVAMGLAL E ++ RA+EFY LLSSF FM STPTLFNSGT Q Sbjct: 302 HVRKTRIELPQSFFMRVAMGLALNEPDRNARAIEFYELLSSFDFMSSTPTLFNSGTLRSQ 361 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PF Sbjct: 362 LSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPF 421 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 LKV NDTAVAVNQGGKRKGAVC YLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPD Sbjct: 422 LKVVNDTAVAVNQGGKRKGAVCTYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPD 481 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV + WTLFSP + DLHDLYG+ FE AY YE + D GE+K+F+++ AV LWR Sbjct: 482 LFMKRVMEAGQWTLFSPADAPDLHDLYGEAFEKAYTAYEAKTDSGELKLFKRVPAVDLWR 541 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 KML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETAVCNLGS+NL Sbjct: 542 KMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNL 601 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + H + + D+DKL T+ TA+R+LDNVIDIN + ++KAK SN HR +G+GLMGFQ AL Sbjct: 602 VQHIKDGKIDHDKLRKTVNTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGMGLMGFQDAL 661 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + + YAS AVE ADE+ME I ++A AS EL++ERG YS+FKGSLWDQG+ P D++ Sbjct: 662 YEMRTAYASQGAVEFADEAMEAICYYAYWASTELSKERGTYSTFKGSLWDQGILPPDTLK 721 Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 LL + R + ++R+++L WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+PS+ Sbjct: 722 LLEKARGGYVEVDRSAKLDWDALRAKIAQDGMRNSNCVAIAPTATISNIVGVDASIEPSF 781 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P ++K ++A Sbjct: 782 GNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPQEIKNLYA 841 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE+ P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKL Y AWL GLKTTYYLR+ Sbjct: 842 TAFEVSPEWLVEAASRRQKWIDQAQSLNIYMAGASGKKLHDTYMLAWLRGLKTTYYLRTT 901 Query: 907 SATSVEKSTLKG--------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 SAT++EKST++ + + I Sbjct: 902 SATNIEKSTVQSRVLNAVSSGAPAASAAPAAKPAVSALEAAAAAARAQAPATDIKFCAID 961 Query: 947 DTECEVCQ 954 D CE CQ Sbjct: 962 DPGCEACQ 969 >gi|167837967|ref|ZP_02464826.1| ribonucleotide-diphosphate reductase subunit alpha [Burkholderia thailandensis MSMB43] Length = 956 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 546/936 (58%), Positives = 690/936 (73%), Gaps = 23/936 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P +G Y +VI+RNG V SF+PSKI+ A+ KAF+AV G Sbjct: 17 RPLAGGAQGAPALALQTTY------ADYKVIRRNGSVVSFEPSKIAIAVTKAFLAVNGGQ 70 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT+ V L++ + HIEDIQDQVE +LM+ G H + R YVLY Sbjct: 71 GAASARVRELVEQLTQTVVRALVRSRPNGGTFHIEDIQDQVELALMRGGEHNVARAYVLY 130 Query: 122 REERSDVR-AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSK 179 RE+R R A + ++ A + + D+G + + L ++ AC GL D V+ + Sbjct: 131 REKRHLERVHAGEAAAVESSAAGGINVT-DNGVTRALDLNALRALIVSACEGLGDAVNPE 189 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKK 239 +++ET KN+YDG+ + + + I ++RT+IEK+P Y++VTAR LL +RRE+L Sbjct: 190 PIVAETVKNLYDGVPMTQVYDSSILAARTMIEKDPAYSQVTARVLLHTIRREILG----- 244 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 ++ T EM Y EYF ++++ GV+A LL + ++ FDL L + L RD F YLGLQ Sbjct: 245 -EEVTQAEMATRYAEYFPQFLKRGVEAELLDDKLLQFDLKRLGDALDASRDLQFGYLGLQ 303 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 LYDRYFLH++G+RIEMPQAFFMRVAMGLAL E ++E RA+EFYN+LSSF FM STPTLF Sbjct: 304 TLYDRYFLHVDGTRIEMPQAFFMRVAMGLALNEIDREARAIEFYNVLSSFDFMSSTPTLF 363 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 NSGTR QLSSC+LTTV DDL GI+ AL++NA+L+K++GGLGNDWT VR LG+HI GTNG Sbjct: 364 NSGTRRSQLSSCYLTTVADDLDGIYEALKDNALLSKFAGGLGNDWTRVRALGSHIKGTNG 423 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGDDRRRTHDM Sbjct: 424 KSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDDRRRTHDM 483 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 NTANWIPDLFMKRV + WTLFSP DLHD +G EFE AY YE + RGEIK+F+K Sbjct: 484 NTANWIPDLFMKRVMEGGDWTLFSPSTCPDLHDKFGAEFEAAYVGYEEKVARGEIKLFKK 543 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LWRKML MLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AV Sbjct: 544 IPAQQLWRKMLGMLFETGHPWITFKDPCNVRSPQQHVGVVHSSNLCTEITLNTSDAEIAV 603 Query: 600 CNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGS+NL+AH D +KL T+ A+R+LDNVIDIN + + KA+ SN HR Sbjct: 604 CNLGSVNLVAHLAKQADGTYALDEEKLKRTVSVAMRMLDNVIDINYYAVAKARNSNLKHR 663 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGFQ LHLL PYAS EAVE AD SME + ++A AS ELA+ERG YSS++GS Sbjct: 664 PVGLGIMGFQDCLHLLRTPYASGEAVEFADRSMEAVCYYAYWASTELAEERGRYSSYRGS 723 Query: 715 LWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 LWD+G+ P D++ LL E R + ++ ++ L W L+ R+ + GMRNSNC+AIAPTATI+ Sbjct: 724 LWDRGILPQDTLKLLTEARGGYVEVDTSATLDWPALRARIDSFGMRNSNCVAIAPTATIS 783 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+R LWDE M++DLKY DG + Sbjct: 784 NIIGVSACIEPTFQNLYVKSNLSGEFTVVNEYLVRDLKERGLWDEVMVADLKYFDGMLSR 843 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+RIP DL+ I+ATAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD +Y+ AW Sbjct: 844 IDRIPADLRAIYATAFEVDPKWLVEAASRRQKWIDQAQSLNIYMGGASGKKLDEVYKLAW 903 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 L GLKTTYYLR+ +AT VEKST+ G LNAVP + Sbjct: 904 LRGLKTTYYLRTMAATHVEKSTV--AHGALNAVPTS 937 >gi|54294661|ref|YP_127076.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella pneumophila str. Lens] gi|53754493|emb|CAH15977.1| hypothetical protein lpl1738 [Legionella pneumophila str. Lens] Length = 942 Score = 969 bits (2504), Expect = 0.0, Method: Composition-based stats. Identities = 558/928 (60%), Positives = 692/928 (74%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 27 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K L I Sbjct: 87 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K +AT EM +YP YF YIE+G+ + Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 265 LDPKMTDFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + I AV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTIPAVKLWRRMLSMLFETGHPWLTFKDPCN 564 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH N + D KL TI TA Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 625 IRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R L +R+ +L W+ Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIP++LK +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKSRYATSFEIDPMWLVEAASRRQKWI 864 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922 Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 + D P +C+ D +CE CQ Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942 >gi|294339030|emb|CAZ87377.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside diphosphate reductase, alpha subunit) (Ribonucleotide reductase large subunit) [Thiomonas sp. 3As] Length = 974 Score = 968 bits (2503), Expect = 0.0, Method: Composition-based stats. Identities = 548/955 (57%), Positives = 686/955 (71%), Gaps = 31/955 (3%) Query: 22 FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81 ++I+RNG V F+PSKI+ A+ KAF+AV+G + S +++ + LTE V Sbjct: 29 ALGDFSDYKIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVR 88 Query: 82 RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141 LL+ S HIEDIQDQVE SLM++G H++ R YVLYRE R+ RA Q + Sbjct: 89 ALLRSRPSGGTFHIEDIQDQVELSLMRTGQHEVARAYVLYRERRTQERAKQKAAAEQQES 148 Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLET 200 AP L ++ D G + L ++E AC L DV + +++ET +N+YDG+ ++ Sbjct: 149 APVLHVL-DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYK 207 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 A I +SRTLIE++P+Y+KVTAR LL +RRE L + +M Y EYF R I Sbjct: 208 AAILASRTLIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCI 261 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--------LHINGS 312 +EGV+ LL E + FDL L LK ERD F+YLGLQ LYDRYF ++ +G Sbjct: 262 KEGVELELLDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGR 321 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR QLSSC+ Sbjct: 322 RIELPQAFFMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCY 381 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTV DDL GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV N Sbjct: 382 LTTVADDLDGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVN 441 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR Sbjct: 442 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 501 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHD +GK+FE AY YE++A GEIK+F+ + AV LWRKML+M Sbjct: 502 VMEGGDWTLFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSM 561 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH Sbjct: 562 LFETGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLK 621 Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + D KL TI+TA+R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ L Sbjct: 622 DAADGAKVIDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCL 681 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + L IPY S +AVE AD SME + + A AS ELA+ERG YSS+ GSLWDQGV P+DS+ Sbjct: 682 YQLRIPYGSQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGVLPMDSLK 741 Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 LLAE R + + +S L W+ L+ ++ GMRNSNC+AIAPTATI+NI GV I+P++ Sbjct: 742 LLAEQRGGYVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTF 801 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 QNLYVKSN+SG+FTV+N +LV +LK R LWD M++DLKY DGS I+RIP DLK +++ Sbjct: 802 QNLYVKSNLSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYS 861 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE D W+IE+A+RRQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ Sbjct: 862 TAFETDTQWIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTI 921 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL-------GIPSSCTSDTECEVCQ 954 AT EKST+K G+LNAVP + S++ S I + ECE CQ Sbjct: 922 GATHAEKSTVKA--GQLNAVPQSPSESASASAQAVVQSGDIRYCAIDNPECEACQ 974 >gi|52842001|ref|YP_095800.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296107365|ref|YP_003619065.1| ribonucleoside-diphosphate reductase alpha chain [Legionella pneumophila 2300/99 Alcoy] gi|52629112|gb|AAU27853.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295649266|gb|ADG25113.1| ribonucleoside-diphosphate reductase alpha chain [Legionella pneumophila 2300/99 Alcoy] gi|307610474|emb|CBX00046.1| hypothetical protein LPW_18011 [Legionella pneumophila 130b] Length = 942 Score = 968 bits (2502), Expect = 0.0, Method: Composition-based stats. Identities = 561/928 (60%), Positives = 694/928 (74%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 27 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K L I Sbjct: 87 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K +AT EM +YP YF YIE+G+ + Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + ISAV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH N + D KL TI TA Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 624 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R L +R+ +L W+ Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 805 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 864 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922 Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 + D P +C+ D +CE CQ Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942 >gi|300784784|ref|YP_003765075.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis mediterranei U32] gi|299794298|gb|ADJ44673.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis mediterranei U32] Length = 972 Score = 968 bits (2502), Expect = 0.0, Method: Composition-based stats. Identities = 570/975 (58%), Positives = 707/975 (72%), Gaps = 37/975 (3%) Query: 13 DAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 + ++VI+R+G V+ FD KIS A+ KAF+AVEG A+ S RV ++ Sbjct: 2 SVETGQRPSAADTPTAIRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVV 61 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 LT+Q T LL+H +HIE IQD VE +LM+ HHK+ R YVLYR+ER+ R A Sbjct: 62 AELTQQVETTLLRHAGPETALHIEQIQDIVELALMRGEHHKVARAYVLYRDERAKAREAV 121 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + ++A L + DG L + R+ +V EA +GL+DV+++ VL+E +N+YDG Sbjct: 122 KPATTEA----TLNVKGTDGVLRPLDWARVSHVVGEAVAGLEDVTAEPVLAEAKRNLYDG 177 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +S +L A I ++R L+E+EPNY+ V+AR LL+KLR E L+ + P+ A+ EM Y Sbjct: 178 ISADELALAQIMAARVLVEQEPNYSYVSARLLLDKLRGEALSYLAGTPRLASQDEMAAEY 237 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 P YF Y+ ++ L+ + FDL + ++ ERD F +LGLQ LYDRYF H +G+ Sbjct: 238 PAYFRAYLRRAIELELVDAELQRFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHDGT 297 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 R E+PQAFFMRVAMGLA++E ++E RA+EFY LLSSFHFM STPTLFNSGT PQLSSCF Sbjct: 298 RFELPQAFFMRVAMGLAIREGDREARAIEFYELLSSFHFMASTPTLFNSGTTRPQLSSCF 357 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTV DDL IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+AN Sbjct: 358 LTTVDDDLDSIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIAN 417 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++R Sbjct: 418 DTAVAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRR 477 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +A WTLFSP+E DLHDLYG EF Y YE ADRGEIKVFR+ AV LWR+MLTM Sbjct: 478 VEADAQWTLFSPNETPDLHDLYGNEFATRYREYEAAADRGEIKVFRRARAVDLWRRMLTM 537 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++SEE AVCNLGS+NLL H Sbjct: 538 LFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNSEEVAVCNLGSVNLLKHVT 597 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L T+RTAVR+LDNVIDIN +TI +A++SN HR +GLG+MGFQ AL + + Sbjct: 598 PEGLDTKRLEKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFEIGV 657 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+AS EAV+ AD SME +S++AISAS +LA+ERG Y SF+GSLW +G+ PIDS+ LL + Sbjct: 658 PFASEEAVKFADVSMEHLSYYAISASTDLAEERGQYQSFEGSLWSKGILPIDSLQLLIDA 717 Query: 733 R--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R D L ++ +S L W L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNL+ Sbjct: 718 RQGDGLDVDTSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLF 777 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSNMSGDFTVVN LV LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFE Sbjct: 778 VKSNMSGDFTVVNPHLVRSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFE 837 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 I+ W++++ S RQKWIDQAQSLNLY+ PSG+KLD +YR AW GLKTTYYLR++SAT Sbjct: 838 IESKWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKTTYYLRAQSATH 897 Query: 911 VEKSTLKGVDGKLNAVP-------------------------------VTDPNSSTHSLG 939 VEKSTL+G DGKLNAV +P+ + Sbjct: 898 VEKSTLRGTDGKLNAVSATPAPAAPAAAAPAPAPTPTPAPAPAPSPSPKPEPDVDFVATE 957 Query: 940 IPSSCTSDTECEVCQ 954 + D +CE CQ Sbjct: 958 GAACRIDDPDCEACQ 972 >gi|187479452|ref|YP_787477.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella avium 197N] gi|115424039|emb|CAJ50592.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella avium 197N] Length = 970 Score = 968 bits (2502), Expect = 0.0, Method: Composition-based stats. Identities = 538/971 (55%), Positives = 699/971 (71%), Gaps = 29/971 (2%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 ++ E + + +I+RNG V F+P KI+ A+ KAF+AV G + Sbjct: 9 TRSTAVPPESNEGQASISHAGQWASYNLIRRNGSVVGFEPGKIAIAMTKAFLAVNGGQGA 68 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S RV++++ LTEQ V L+++ S HIED+QDQVE SLM+SG H + R YVLYRE Sbjct: 69 ASARVRELVGQLTEQVVNALVRNRPSGGTFHIEDVQDQVELSLMRSGQHDVARAYVLYRE 128 Query: 124 ERSDVRAAQS--HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 R+ RAA + K+ P P L + D+G + +L +E A GL + + ++ Sbjct: 129 RRAQERAAAAEVQDKAAVPAEPTLNV-NDNGVRRPLDMAQLRATIEAAGVGLTEFIDTET 187 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L ET KN+YDG+ ++ + I ++R L+EK+P Y++VTAR LL +R+EVL Sbjct: 188 ILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG------ 241 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ + M Y YF +I+ G++A LL + +FDL +A L RD F YLGLQ Sbjct: 242 EEVSQASMAERYATYFPTFIQRGIEAGLLDAKLAEFDLERIARALNANRDLQFGYLGLQT 301 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E+++E RA+EFY +LSSF FM STPTLFN Sbjct: 302 LYDRYFLHVRGTRIELPQVFFMRVAMGLALRESDREARAIEFYEILSSFDFMSSTPTLFN 361 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI GTNG+ Sbjct: 362 SGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKGTNGE 421 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRTHDMN Sbjct: 422 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMN 481 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFMKRV +N WTLFSP + DLHD YG+ FE AY YE +A GE+K+F+K+ Sbjct: 482 TANWIPDLFMKRVVENGDWTLFSPSDCPDLHDKYGRAFEQAYLGYEAKAASGELKLFKKM 541 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A++LWRKML+MLFETGHPWITFKDPCNIRSPQQH+GVVHSSNLCTEITLN++ E AVC Sbjct: 542 PAISLWRKMLSMLFETGHPWITFKDPCNIRSPQQHIGVVHSSNLCTEITLNTNESEIAVC 601 Query: 601 NLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 NLGS+NL+AH + D+DK+ T+ A+R+LDNVIDIN + +EKA+ SN HR Sbjct: 602 NLGSVNLVAHMKPSANGGYELDHDKIKHTVGIAMRMLDNVIDINYYAVEKARNSNLRHRP 661 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG+MGFQ LH++ +PYAS A+E AD SME + + A AS LA+ERG Y S++GSL Sbjct: 662 VGLGIMGFQDCLHMMRVPYASQAAIEFADRSMEAVCYQAYWASSTLAEERGRYPSYEGSL 721 Query: 716 WDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W +G+ P DSI +L + R + ++ +S L WD L+ R+K GMRNSNC+AIAPTATI+N Sbjct: 722 WSRGILPQDSIAMLRDERGGNVDVDESSSLDWDTLRARIKAHGMRNSNCVAIAPTATISN 781 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLKY DGS+ I Sbjct: 782 IIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRI 841 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 +R+P +L++++ATAFE++P WL+E A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW Sbjct: 842 DRVPTELRELYATAFEVEPSWLVECAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQ 901 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-----THSLGIPSSCTSDT- 948 GLKTTYYLR+ ATS EKST +G G+LNAV + ++S + ++CT Sbjct: 902 RGLKTTYYLRTMGATSAEKSTGRG--GELNAVSAGNHSASAAPVLPEPEVVGAACTMRPG 959 Query: 949 -----ECEVCQ 954 ECE CQ Sbjct: 960 DPGFEECEACQ 970 >gi|54297687|ref|YP_124056.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella pneumophila str. Paris] gi|53751472|emb|CAH12890.1| hypothetical protein lpp1738 [Legionella pneumophila str. Paris] Length = 942 Score = 967 bits (2499), Expect = 0.0, Method: Composition-based stats. Identities = 559/928 (60%), Positives = 694/928 (74%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 27 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K L I Sbjct: 87 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 145 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 146 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 205 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K +AT EM +YP YF YIE+G+ + Sbjct: 206 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 264 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 265 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 324 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 325 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 384 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 385 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 444 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 445 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 504 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + ISAV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 505 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 564 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGS+NL AH N + D KL TI TA Sbjct: 565 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSVNLPAHIKNGKLDEQKLKRTISTA 624 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 625 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 684 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R L +R+ +L W+ Sbjct: 685 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 744 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 745 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 804 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIP++LK+ +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 805 ADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRRQKWI 864 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 865 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 922 Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 + D P +C+ D +CE CQ Sbjct: 923 LIDTE--------PKACSITDPDCEACQ 942 >gi|148359318|ref|YP_001250525.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella pneumophila str. Corby] gi|148281091|gb|ABQ55179.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella pneumophila str. Corby] Length = 917 Score = 967 bits (2498), Expect = 0.0, Method: Composition-based stats. Identities = 561/928 (60%), Positives = 694/928 (74%), Gaps = 14/928 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++ IKRNG V +D +KI AI KAF+A EG A S R+ I+ LT Q + Sbjct: 2 LKTIKRNGKVVIYDDTKIKIAITKAFIADEGGTAPTSDRIHQQIEELTRQITQVFKRRLP 61 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +HIE+IQDQVE +LM+SGH+K+ R YVLYREER R ++S K L I Sbjct: 62 SGGAIHIEEIQDQVELALMRSGHYKVARSYVLYREERRKARESESKQKQTKDSKHLL-IT 120 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 M +G + + R+ IV+E+C L +V ++ V+ + +N+Y+ D+ ALI S+R Sbjct: 121 MPNGEVQPLDMDRVNTIVKESCRDLSNVKAEPVIKDALRNLYNQAKYEDVHKALIMSARA 180 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+EKEPNY V+AR LL+ LR E LT + K +AT EM +YP YF YIE+G+ + Sbjct: 181 LVEKEPNYTYVSARLLLDSLRSEALTKLNIK-SEATFDEMAQIYPVYFKSYIEQGIAQGM 239 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L M DFDL L+ L ERD F YL LQ LYDRYF+H G R E+PQAFFMRVAMGL Sbjct: 240 LDPKMADFDLDKLSQALLPERDMKFTYLSLQTLYDRYFIHERGVRYELPQAFFMRVAMGL 299 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E KE++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTVPD L GI+ A++ Sbjct: 300 ALREQHKEEKAIEFYQLLSSFDYMSSTPTLFNSGTVRPQLSSCYLTTVPDHLDGIYSAIK 359 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+KY+GGLGNDWTPVR +GAHI GTNGKSQGV+PFL VA+ TAVAVNQGGKRKGAV Sbjct: 360 DNALLSKYAGGLGNDWTPVRAMGAHIKGTNGKSQGVVPFLNVADATAVAVNQGGKRKGAV 419 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA W+PDLFMKRV ++ WTLFSPDEV Sbjct: 420 CAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFSPDEVP 479 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD YGK FE Y YE +A +G I+ + ISAV LWR+ML+MLFETGHPW+TFKDPCN Sbjct: 480 DLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTFKDPCN 539 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S EE AVCNLGSINL AH N + D KL TI TA Sbjct: 540 LRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKLDEQKLKRTISTA 599 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +++ +A+ SN HR IGLG+MGFQ AL+ L + YAS EA+E AD SME Sbjct: 600 VRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIEFADSSME 659 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747 IS++AI AS +LA+ERG+YS+++GSLW +G+ PIDSI LL + R L +R+ +L W+ Sbjct: 660 LISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDRSQKLDWE 719 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ +V+T GMRNSN MAIAPTATI+NICGVSQSI+P+YQNLYVKSN+SG+FTVVN +LV Sbjct: 720 PLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLV 779 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK +LWDE M++DLKY +GS+ I RIPD+LK+ +AT+FEIDPMWL+E+ASRRQKWI Sbjct: 780 ADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQKWI 839 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLN+Y+ +PSGKKLD +Y AW+ GLKTTYYLRS A++ EKST+ DG LNAV Sbjct: 840 DQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKTTYYLRSLGASNAEKSTV--TDGALNAVK 897 Query: 928 VTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 + D P +C+ D +CE CQ Sbjct: 898 LIDTE--------PKACSITDPDCEACQ 917 >gi|253997286|ref|YP_003049350.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera mobilis JLW8] gi|253983965|gb|ACT48823.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera mobilis JLW8] Length = 938 Score = 964 bits (2492), Expect = 0.0, Method: Composition-based stats. Identities = 561/947 (59%), Positives = 698/947 (73%), Gaps = 22/947 (2%) Query: 15 FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74 S + +QVI+RNG +F+ KIS AI KAF+AVEG ++ S RV+D + + Sbjct: 7 SSSTDSVQATMLPMLQVIRRNGAAVTFNLDKISIAITKAFLAVEGNHSAASQRVRDQVTS 66 Query: 75 LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 L++ L++ + +HIEDIQDQVE +LM++G+H + R YVLYRE+R+ RAA+ Sbjct: 67 LSQIVNHALIRRLPTGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKA 126 Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGL 193 + S+ A + I DG L+ N K+L +V EAC L +V +V+ + +++YDG+ Sbjct: 127 TTSEPSHALNVNI---DGKLVPLNIKQLNEMVAEACLNLGNEVDVNLVVEQAVRDLYDGI 183 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 +++ ALI S+R+LIE EP Y VTAR L+ +R EVL ++ +H EM Y Sbjct: 184 PFTEVYKALILSARSLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAEMDAHYA 237 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 EYF RYI+ G+ A LL + FDL LAN L ERDF F YLG+Q LYDRYFLHI R Sbjct: 238 EYFPRYIKIGIDADLLDPRLAQFDLDKLANALVKERDFQFGYLGIQTLYDRYFLHIEERR 297 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 IE+PQ FFMRVAMGLA+ E ++E RA+EFYN+LS+F FM STPTLFN+GT H QLSSC+L Sbjct: 298 IELPQIFFMRVAMGLAINEIDREARAIEFYNVLSTFDFMSSTPTLFNAGTLHSQLSSCYL 357 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TTV DDL GI+ ++ENA+L KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV ND Sbjct: 358 TTVSDDLDGIYQGIKENALLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVND 417 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAVNQGGKRKGAVC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RV Sbjct: 418 TAVAVNQGGKRKGAVCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRV 477 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 T+ WTLFSP +V DLHD YGK FE AY YER+AD GEIK+F+++ A+ +WRKML+ML Sbjct: 478 TEQGEWTLFSPSDVPDLHDKYGKAFEKAYVEYERRADTGEIKLFKRVPAIQMWRKMLSML 537 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NLL H Sbjct: 538 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLLQHLKE 597 Query: 614 NQF----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D DKL +TI+ +R+LDNV+DIN + + KA+ SN HR +G+G+MGFQ+ LH Sbjct: 598 VNGNLELDNDKLQATIKVGMRMLDNVVDINFYPVGKARNSNTRHRPVGMGIMGFQNCLHA 657 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + IPYAS +AVE AD +ME + ++A AS LA+ERG YSSFKGSLWDQG+ P+D++ LL Sbjct: 658 MRIPYASMDAVEFADRAMEMVCYNAYWASTVLAEERGPYSSFKGSLWDQGILPLDTLNLL 717 Query: 730 AEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 R + ++R+ L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQN Sbjct: 718 EAERGGNVEVDRSKTLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQN 777 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LYVKSN+SG+FT+VN LVN+LK R LWD M+SDLKY DGS+ IER+P DLK+++ATA Sbjct: 778 LYVKSNLSGEFTIVNEQLVNDLKARGLWDTVMVSDLKYFDGSLAPIERVPADLKQLYATA 837 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 F++DP WLIE+A+RRQKWIDQAQSLNLY PSGKKL+ Y AW GLKTTYYLRS A Sbjct: 838 FDVDPSWLIEAAARRQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSLGA 897 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 T+ EKST G G+LNAV +T P C+ D +CE CQ Sbjct: 898 TAAEKST--GSGGELNAVSA----HTTAPEPAPKMCSIDNPDCESCQ 938 >gi|241764093|ref|ZP_04762130.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax delafieldii 2AN] gi|241366557|gb|EER61045.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidovorax delafieldii 2AN] Length = 975 Score = 964 bits (2492), Expect = 0.0, Method: Composition-based stats. Identities = 540/984 (54%), Positives = 693/984 (70%), Gaps = 39/984 (3%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAV 57 M + + A +LA PE + Q+I+RNG V F+P KI+ A+MKAF+AV Sbjct: 1 MQAALNTPPSHTAASQALAPNAPEASHVLNHYQIIRRNGAVVPFEPQKIAVAMMKAFLAV 60 Query: 58 EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITRE 117 G + S V++++ LT L++ HIED+QDQVE LM+SGHH+I R Sbjct: 61 HGTQGAASASVREVVDTLTHNVTRALMRSRPGGGTFHIEDVQDQVELGLMRSGHHEIARA 120 Query: 118 YVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DV 176 YVLY + H++ P AP+L ++ D G + + RL+ ++E AC+GL DV Sbjct: 121 YVLY--RERRTQERTRHNEEQLPQAPQLHVL-DGGERVVLDQGRLQSLIESACTGLGADV 177 Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236 S++ +++ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR LL + REVL Sbjct: 178 SAQPIVAETMRNLYDGVPMEEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLG-- 235 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 ++ +M Y +YF ++I++GV+ LL E ++ +DL L LK ERD F+YL Sbjct: 236 ----REVAPADMAQSYVDYFPQFIKKGVENDLLDERLLQYDLQRLGAALKAERDLQFDYL 291 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 GLQ LYDRYFLH+ +RIE+PQAFFMRVAMGL+L E ++E RA+EFY +LSSF FM STP Sbjct: 292 GLQTLYDRYFLHVKKNRIELPQAFFMRVAMGLSLNEIDREARAIEFYEILSSFDFMSSTP 351 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TLFNSGT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+HI G Sbjct: 352 TLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSHIKG 411 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRT Sbjct: 412 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRT 471 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANWIPDLFM+RV + WTLFSP V DLHDL+G +FE AY YE +A RGEIK Sbjct: 472 HDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGTDFEKAYVAYEEKAARGEIKP 531 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 R + A LWRK+LTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S E Sbjct: 532 ARTVQATDLWRKILTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLCTEITLNTSDTE 591 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 TAVCNLGS+NLL H N Q D+DKL TI A+R+LDNVIDIN + ++KA+ SN HR + Sbjct: 592 TAVCNLGSVNLLQHLKNGQIDHDKLKKTITVAMRMLDNVIDINYYAVKKARDSNLRHRPV 651 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+M FQ +L+ L IPYAS EAVE AD+SME I ++A AS ELA+ERG YSS+KGSLW Sbjct: 652 GLGVMAFQDSLYELRIPYASQEAVEFADQSMEAICYYAYWASTELARERGRYSSYKGSLW 711 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 D+G+ P+D++ +LA+ R + ++R++ L WD L+K++ GMRNSNC+AIAPTATI+NI Sbjct: 712 DRGILPLDTLDMLAQARGGYVEVDRSATLDWDALRKKIAQDGMRNSNCVAIAPTATISNI 771 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GV SI+PS+ NL VKSN+SG+FTV+N LV +LK+ LWD+ MI DLK+ GS+ I+ Sbjct: 772 IGVDASIEPSFGNLSVKSNLSGEFTVINGGLVRDLKRLGLWDDVMIMDLKHFKGSLHPID 831 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 R+P D+K +++TAFE++P WL+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ Sbjct: 832 RVPQDIKALYSTAFEVEPRWLVEAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVR 891 Query: 896 GLKTTYYLRSRSATSVEKSTLKG------VDGKLNAVPVTDPNSSTHSL----------- 938 GLKTTYYLR++SAT VE ST+ G N S Sbjct: 892 GLKTTYYLRTQSATHVEMSTVNTRQLNAVSSGHDNGGSHASAAQSAPPSTMEAAIAAAAL 951 Query: 939 --------GIPSSCTSDTECEVCQ 954 I D CE CQ Sbjct: 952 QAAELPATDIKFCAIDDPTCEACQ 975 >gi|296135013|ref|YP_003642255.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas intermedia K12] gi|295795135|gb|ADG29925.1| ribonucleoside-diphosphate reductase, alpha subunit [Thiomonas intermedia K12] Length = 978 Score = 963 bits (2489), Expect = 0.0, Method: Composition-based stats. Identities = 548/959 (57%), Positives = 685/959 (71%), Gaps = 35/959 (3%) Query: 22 FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81 ++I+RNG V F+PSKI+ A+ KAF+AV+G + S +++ + LTE V Sbjct: 29 ALGDFSDYKIIRRNGAVVGFEPSKIAVAMTKAFLAVQGGQGAASASMRETVNALTENVVR 88 Query: 82 RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141 LL+ S HIEDIQDQVE SLM++G H++TR YVLYRE R+ RA Q + Sbjct: 89 ALLRSRPSGGTFHIEDIQDQVELSLMRTGQHEVTRAYVLYRERRTQERAKQKAAAEQQES 148 Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLET 200 AP L ++ D G + L ++E AC L DV + +++ET +N+YDG+ ++ Sbjct: 149 APVLHVL-DGGLRKPLDQAALVSLIESACVNLSADVKAAPIVAETLRNLYDGVPMLEVYK 207 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 A I +SRTLIE++P+Y+KVTAR LL +RRE L + +M Y EYF R I Sbjct: 208 ASILASRTLIERDPDYSKVTARLLLHTMRRETLN------EDIPQEQMTQRYAEYFPRCI 261 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--------LHINGS 312 +EGV+ LL E + FDL L LK ERD F+YLGLQ LYDRYF ++ +G Sbjct: 262 KEGVELELLDERLGQFDLARLGAALKAERDLQFDYLGLQTLYDRYFLANRADTRVNKDGR 321 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQAFFMRVAMGL+L E ++E RA+EFY LLSSF FM STPTLFN+GTR QLSSC+ Sbjct: 322 RIELPQAFFMRVAMGLSLNEIDREARAIEFYELLSSFDFMSSTPTLFNAGTRRSQLSSCY 381 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTV DDL GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GTNGKSQGV+PFLKV N Sbjct: 382 LTTVADDLDGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGTNGKSQGVVPFLKVVN 441 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR Sbjct: 442 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 501 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + WTLFSP +V DLHD +GK+FE AY YE++A GEIK+F+ + AV LWRKML+M Sbjct: 502 VMEGGEWTLFSPADVPDLHDKFGKDFEQAYTRYEQKAALGEIKLFKTLPAVQLWRKMLSM 561 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH Sbjct: 562 LFETGHPWITFKDACNVRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLK 621 Query: 613 N-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + D KL TI+TA+R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ L Sbjct: 622 DAADGAKVIDQAKLKRTIQTAMRMLDNVIDINYYAVAKARNANMKHRPVGLGIMGFQDCL 681 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + L IPY S +AVE AD SME + + A AS ELA+ERG YSS+ GSLWDQG+ P+DS+ Sbjct: 682 YQLRIPYGSQQAVEFADRSMEAVCYEAYWASSELARERGRYSSYGGSLWDQGILPMDSLK 741 Query: 728 LLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 LLAE R + + +S L W+ L+ ++ GMRNSNC+AIAPTATI+NI GV I+P++ Sbjct: 742 LLAEQRGGYVEADTSSTLDWNALRAQIAQHGMRNSNCVAIAPTATISNIVGVDACIEPTF 801 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 QNLYVKSN+SG+FTV+N +LV +LK R LWD M++DLKY DGS I+RIP DLK ++A Sbjct: 802 QNLYVKSNLSGEFTVINQYLVRDLKARGLWDAVMVADLKYFDGSTQRIDRIPADLKALYA 861 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE D W+IE+A+RRQKWIDQAQSLN+Y+ SGK LD Y+ AWL GLKTTYYLR+ Sbjct: 862 TAFETDTQWIIEAAARRQKWIDQAQSLNIYMANASGKLLDDTYKLAWLRGLKTTYYLRTI 921 Query: 907 SATSVEKSTLKGVDGKLNAVPVTD-----------PNSSTHSLGIPSSCTSDTECEVCQ 954 AT EKST+K G+LNAVP + + S I + ECE CQ Sbjct: 922 GATHAEKSTVKA--GQLNAVPQSPSESVSALASASAQAVVQSGDIRYCAIDNPECEACQ 978 >gi|121608467|ref|YP_996274.1| ribonucleotide-diphosphate reductase subunit alpha [Verminephrobacter eiseniae EF01-2] gi|121553107|gb|ABM57256.1| ribonucleoside-diphosphate reductase, alpha subunit [Verminephrobacter eiseniae EF01-2] Length = 968 Score = 962 bits (2487), Expect = 0.0, Method: Composition-based stats. Identities = 535/974 (54%), Positives = 683/974 (70%), Gaps = 38/974 (3%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 H + A P A ++ Q+++RNG V F P KI+ A+MKAF+AV G Sbjct: 12 HTLPADVQAKPAAAPDHA------LEHYQIMRRNGAVVPFQPQKIALAMMKAFLAVHGTQ 65 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S V++++ LT+ L++ HIED+QDQVE LM+ GHH+I R YVLY Sbjct: 66 GAASASVREVVDGLTQTVTRALMRSRPGGGTFHIEDVQDQVELGLMRGGHHEIARSYVLY 125 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180 RE R+ R+ Q P A L ++ G ++ + RL+ ++E AC GL DV + Sbjct: 126 RERRTQERSRQG--SPQQPAAALLHVLDA-GVRVALDPARLQALIESACVGLGPDVKADP 182 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +++ET +N+YDG+ ++ A I ++RTLIEK+P+Y+ TAR LL + REVL + Sbjct: 183 IVAETMRNLYDGVPMDEVCKAAILAARTLIEKDPDYSYATARLLLHTIVREVLGSDVP-- 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 +M Y +YF R+I++GV LL E ++ +DL L ++ ERD F+YLGLQ Sbjct: 241 ----QAQMALAYGDYFPRFIKKGVDNGLLDERLLQYDLQRLGAAIRAERDLKFDYLGLQT 296 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH+ +RIE+PQ FFMRVAMGLAL E E+E RA+EFY +LSSF FM STPTLFN Sbjct: 297 LYDRYFLHVRKTRIELPQVFFMRVAMGLALNEVEREARAIEFYEVLSSFDFMSSTPTLFN 356 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG++I GTNG+ Sbjct: 357 SGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSYIAGTNGE 416 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 417 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMN 476 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFM RV + WTLFSP V DLH+L+G +FE AY YE QA RG I R + Sbjct: 477 TANWIPDLFMHRVMEKGHWTLFSPSSVPDLHELFGADFEKAYVAYEEQAARGAIGPARTV 536 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S ETAVC Sbjct: 537 QATDLWRKMLTMLFETGHPWITFKDACNLRSPQQHAGVVHSSNLCTEITLNTSDSETAVC 596 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGS+NLL H + Q D+DKL TI A+R+LDNVIDIN + + KA+ SN HR +GLG+ Sbjct: 597 NLGSVNLLQHLKDGQIDHDKLRQTITVAMRMLDNVIDINYYAVRKARDSNLRHRPVGLGV 656 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M FQ L+ L IPYAS AVE AD+SME I ++A AS ELA+ERG Y S++GSLW++G Sbjct: 657 MAFQDCLYELRIPYASQAAVEFADQSMEAICYYAYWASTELAKERGKYLSYEGSLWERGQ 716 Query: 721 FPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P+D++ LLA+ R L ++R+SRL WD L++++ GMRNSNC+AIAPTATI+NI GV Sbjct: 717 LPLDTLDLLAQARGDYLQVDRSSRLDWDALRQKIAQDGMRNSNCVAIAPTATISNIVGVD 776 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI+PS+ NL VKSN+SG+FTV+N+ LV +LK+ LWDE MI DLK+ GS+ I+R+P Sbjct: 777 ASIEPSFGNLSVKSNLSGEFTVINAGLVRDLKRLGLWDEVMIMDLKHFKGSLHPIDRVPQ 836 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 D+K +++TAFE+DP WL+E+ASRRQKWIDQAQSLN+Y+ SG+KLD Y+ AW+ GLKT Sbjct: 837 DIKALYSTAFEVDPQWLVEAASRRQKWIDQAQSLNIYMAGASGRKLDETYKLAWVRGLKT 896 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPV-------------------TDPNSSTHSLGI 940 TYYLR++SAT VE ST+ G+LNAV + I Sbjct: 897 TYYLRTQSATHVEMSTVN--TGQLNAVSSGPHGDAFGAAATSTPMSTAAAQAGDRPATDI 954 Query: 941 PSSCTSDTECEVCQ 954 + CE CQ Sbjct: 955 AFCALDNPTCEACQ 968 >gi|33598410|ref|NP_886053.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella parapertussis 12822] gi|33603350|ref|NP_890910.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella bronchiseptica RB50] gi|33574539|emb|CAE39186.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella parapertussis] gi|33577474|emb|CAE34739.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella bronchiseptica RB50] Length = 975 Score = 962 bits (2485), Expect = 0.0, Method: Composition-based stats. Identities = 544/979 (55%), Positives = 700/979 (71%), Gaps = 39/979 (3%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P+ E + P + +I+RNG V F+PSKI+ A+ KAF+AV G Sbjct: 10 RPTAVPPAQSETS----TDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQ 65 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT Q V+ L+++ + HIED+QDQVE +LM+SG H + R YVLY Sbjct: 66 GAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLY 125 Query: 122 REERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176 RE R+ RAA S A P L ++ D+G + L +E A GL Q Sbjct: 126 RERRAQERAAAAEVLEKSSPAAAQEPTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYT 184 Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236 ++ +L ET KN+YDG+ ++ + I ++R L+EK+P Y++VTAR LL +R+EVL Sbjct: 185 DTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG-- 242 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 ++ + +M Y EYF +I+ G++ LL + ++DL +A L RD F YL Sbjct: 243 ----EEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYL 298 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 GLQ LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STP Sbjct: 299 GLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTP 358 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI G Sbjct: 359 TLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKG 418 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRT Sbjct: 419 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRT 478 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANWIPDLFMKRV +N WTLFSP + DLHD YGK FE AY YE + GE+K+ Sbjct: 479 HDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKL 538 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 F+K+ AV+LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E Sbjct: 539 FKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATE 598 Query: 597 TAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 AVCNLGS+NL+AH + D+DKL TI A+R+LDNVIDIN + ++KA+ SN Sbjct: 599 IAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNE 658 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 HR +G+G+MGFQ LH++ +PYAS +A++ AD SME + +HA AS ELAQERG Y S+ Sbjct: 659 RHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSY 718 Query: 712 KGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 +GSLW +G+ P D++ +L E R + ++ +S L WD L+ R+K GMRNSNC+AIAPTA Sbjct: 719 EGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTA 778 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 TI+NI GVS I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLKY DGS Sbjct: 779 TISNIIGVSACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGS 838 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 + I+R+P +L+K++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ Sbjct: 839 LSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYK 898 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--------- 941 AW GLKTTYYLR+ ATS EKST +G G+LNAV D + + P Sbjct: 899 LAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVG 956 Query: 942 SSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 957 AVCTMRPGDPGFEECEACQ 975 >gi|160896948|ref|YP_001562530.1| ribonucleotide-diphosphate reductase subunit alpha [Delftia acidovorans SPH-1] gi|160362532|gb|ABX34145.1| ribonucleoside-diphosphate reductase, alpha subunit [Delftia acidovorans SPH-1] Length = 973 Score = 961 bits (2484), Expect = 0.0, Method: Composition-based stats. Identities = 534/967 (55%), Positives = 688/967 (71%), Gaps = 32/967 (3%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71 + A PS A+ + G Q+I+R+G V F P KI+ A+ KAF+AV G + S V++ Sbjct: 15 DAANPSSAHHLSVQ-DGYQIIRRSGDVVPFTPQKIAVALTKAFLAVRGAQGAASASVRET 73 Query: 72 IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA 131 + LT+ V LL+ HIED+QDQVE LM+ GHH + R YVLYR+ R+ RA Sbjct: 74 VDELTQAVVRALLRSRPGGGTFHIEDVQDQVELGLMRGGHHDVARAYVLYRDRRNQERAE 133 Query: 132 QSHSKSDAPIAP-----KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSET 185 Q + A A L + D+G + + RL ++E +C L D+ + +++ET Sbjct: 134 QKKAAEAAAAAAAAPAPVLHVT-DNGQRVPLDQARLLALIEASCRNLNADIQAAPIVAET 192 Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245 +N+YDG+ ++ A I ++RTLIEK+P+Y VTAR LL + REV+ + Sbjct: 193 LRNLYDGVPIEEVFKASILAARTLIEKDPDYTYVTARLLLHTIVREVMG------RDVQP 246 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 ++Q Y EYF +I +GV LL+ ++++DL LA +K ERD F+YLGLQ LYDRY Sbjct: 247 ADIQAAYAEYFPGFIRKGVDNELLNPELLNYDLPRLAAAIKAERDEQFDYLGLQTLYDRY 306 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 FLH+ +RIE+PQ+FFMRVAMGLAL+E ++ RA+EFY LLSSF FM STPTLFNSGT Sbjct: 307 FLHVRKTRIELPQSFFMRVAMGLALQEEDRNARAIEFYELLSSFDFMSSTPTLFNSGTLR 366 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+ Sbjct: 367 SQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVV 426 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWI Sbjct: 427 PFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWI 486 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PDLFMKRV + WTLFSP +V DLHDL+G FE AY YE +AD GE+K+F++I A+ L Sbjct: 487 PDLFMKRVMEKGHWTLFSPSDVGDLHDLFGAAFEHAYTAYETKADNGELKLFKRIPAMDL 546 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 WRKML+MLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+ Sbjct: 547 WRKMLSMLFETGHPWVTFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSV 606 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL H + D+ KL TI TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ Sbjct: 607 NLARHIVDGAIDHGKLRKTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQD 666 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 AL+ + I YAS AVE AD+SME I ++A AS ELA+ERG YSS+KGSLWDQG+ P+D+ Sbjct: 667 ALYEMRIAYASDAAVEFADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDT 726 Query: 726 IGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + LL + R + ++R+SRL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+P Sbjct: 727 LNLLEKARGGYVEVDRSSRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 786 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 S+ NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ DGS+ I+R+P D+K + Sbjct: 787 SFGNLSVKSNLSGEFTVINQYLVRDLKRLGLWDDVMVMDLKHFDGSLRPIDRVPQDVKSL 846 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 +ATAFE++P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR Sbjct: 847 YATAFEVEPTWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKTTYYLR 906 Query: 905 SRSATSVEKSTLKG-----------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 + SAT++EKST++ + + I D Sbjct: 907 TTSATNIEKSTVQSRVLNAVPSAAAAQPAAVNTSSALEAAAAAARAQAPATDIKFCAIDD 966 Query: 948 TECEVCQ 954 CE CQ Sbjct: 967 PGCEACQ 973 >gi|119713587|gb|ABL97638.1| ribonucleotide-diphosphate reductase alpha subunit [uncultured marine bacterium EB0_39H12] Length = 955 Score = 961 bits (2483), Expect = 0.0, Method: Composition-based stats. Identities = 542/954 (56%), Positives = 707/954 (74%), Gaps = 7/954 (0%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 K+ NK ++VIKRNG V S+D KI+ AI KAF+AVEG A+ Sbjct: 6 QKEENKQKTTQIEQEQPKPAIAPGQMRVIKRNGSVVSYDAEKIAIAITKAFLAVEGGAAA 65 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ + + L T + S +HIE+IQDQVE LM+SG K+ R YVLYRE Sbjct: 66 ASTRIHNEVNQLANSVTTTFTRRMPSGGTLHIEEIQDQVELELMRSGEQKVARTYVLYRE 125 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 ER +R + +++ +++G + + K LE++V EAC GL+ +++ ++ Sbjct: 126 ERKQLR---QKEEPQKEEKEGIRVTLENGDEDTQDIKHLEIMVTEACEGLEGTNAQQIID 182 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 E KN+YDG++E D T+L+ +SRTL+E+EPNY VTAR LL+ +R E L T + ++A Sbjct: 183 EANKNLYDGVTEEDARTSLVMTSRTLVEQEPNYTYVTARILLDNIRTEAL-TYLELQKQA 241 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 T EM+ LYP+ ++ +GV+ +L+ +++ D+ L + RD F YLGLQ LYD Sbjct: 242 TQQEMKVLYPQALRSFLAKGVENEILNPELLEMDIEKLGKAIDSSRDMDFTYLGLQTLYD 301 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H R E+PQ FFMRV+MGLAL+E ++E++A+EFYNLLSSF +M STPTLFNSGT Sbjct: 302 RYFIHDTEIRYELPQVFFMRVSMGLALREEKREEKAIEFYNLLSSFDYMSSTPTLFNSGT 361 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +H QLSSC+LTTVPDDL+GI+GA+Q+NAML+K++GGLGNDWTPVRGLG+ I GTNGKSQG Sbjct: 362 KHSQLSSCYLTTVPDDLHGIYGAIQDNAMLSKWAGGLGNDWTPVRGLGSQIKGTNGKSQG 421 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVC+YLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 422 VVPFLKVVNDTAVAVNQGGKRKGAVCSYLETWHVDIEEFVELRKNTGDDRRRTHDMNTAN 481 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+PDLF+KRV+++ WTLF+P + DLHDLYG EFE YE YE Q GEI+ F+++ A Sbjct: 482 WVPDLFLKRVSEDKKWTLFTPSDTPDLHDLYGLEFEKRYEEYETQTKTGEIEFFKEVEAK 541 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW+KML+M+FETGHPWITFKD CN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLG Sbjct: 542 DLWKKMLSMVFETGHPWITFKDVCNLRSPQQHTGVVHSSNLCTEITLNTSQDEIAVCNLG 601 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+NL H + + D +KL TI TA+R+LDNVIDIN + ++ A+ SN HR IGLG+MGF Sbjct: 602 SVNLTHHIKDGKMDEEKLEKTINTAIRMLDNVIDINFYAVKAAETSNMKHRPIGLGIMGF 661 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 AL++L PYAS EAV+ AD+SME +S++AI AS +LA+ERGAY S++GSLW QG+ PI Sbjct: 662 HDALYMLETPYASQEAVDFADKSMEMVSYYAIKASSDLAKERGAYQSYEGSLWSQGILPI 721 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 DSI LL E R L M+ +S + WD L++ V+ G+RNSN MAIAPTATIANI GVSQS Sbjct: 722 DSIKLLKESRGEDYLEMDESSSMDWDGLREIVRNQGIRNSNVMAIAPTATIANITGVSQS 781 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 I+P+YQNLYVKSN+SG+FTV N +V LK+ LWD MI+DLKY+DGS+ I RIP+++ Sbjct: 782 IEPTYQNLYVKSNLSGEFTVTNIPMVENLKRLGLWDSVMINDLKYYDGSVKGISRIPEEV 841 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTY 901 K+++ATAF+I+P WLI++ASRRQKWIDQ+QSLNLY+DEP+GKKLD +YR AWL GLKTTY Sbjct: 842 KELYATAFDIEPRWLIDAASRRQKWIDQSQSLNLYIDEPNGKKLDIMYRMAWLRGLKTTY 901 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 YLRSRSAT+ EKST+ + + ++ PS+C+ D +C+ CQ Sbjct: 902 YLRSRSATTAEKSTISTGELNAVSATAQPEVQPQNNTTAPSACSILDPDCDACQ 955 >gi|325983071|ref|YP_004295473.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas sp. AL212] gi|325532590|gb|ADZ27311.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas sp. AL212] Length = 954 Score = 961 bits (2483), Expect = 0.0, Method: Composition-based stats. Identities = 543/946 (57%), Positives = 695/946 (73%), Gaps = 19/946 (2%) Query: 15 FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74 P+ F + +VI+RNG V +F+P KIS A+ KAF+AV+G + S+RV++++ N Sbjct: 22 MPTQNSRFSQH----RVIRRNGAVVTFEPGKISVALTKAFIAVDGGQGAASVRVREVVVN 77 Query: 75 LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 LT+ V LL+ + HIEDIQDQVE +LM+SG H + R YVLYREER+ RA Sbjct: 78 LTQDVVNALLRRQPDSGTFHIEDIQDQVELALMRSGEHDVARAYVLYREERTRERARLKQ 137 Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGL 193 + A L +M D+G + + +L ++E +C+GL + V ++L T K++YDG+ Sbjct: 138 KSTAETAAEVLYVM-DNGQRVPLDVAKLSALIETSCAGLGNAVDPALILKATLKDLYDGV 196 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 ++ +LI S+R LIEK+P Y+ VTAR LL+ +R EVL + + M+ Y Sbjct: 197 PIDEVRKSLILSARVLIEKDPAYSYVTARLLLDNVRYEVLGA------EVSQQAMKSHYQ 250 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 EYF +I+ G++A LL + + FDL L+ L +RD F+YLGLQ LYDRYFLHI R Sbjct: 251 EYFPAFIKRGIEADLLDQRLAQFDLARLSEALDADRDLQFDYLGLQTLYDRYFLHIKEQR 310 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 IE+PQAFFMRVAMGLAL E ++E RA+EFY +LSSF FM STPTLFNSGT QLSSC+L Sbjct: 311 IELPQAFFMRVAMGLALNEIDREARAIEFYQVLSSFDFMSSTPTLFNSGTCRSQLSSCYL 370 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TTVPDDL GI+ +++ENA+LAKY+GGLGNDWT VR +GA I GTNGKSQGV+PFLKV +D Sbjct: 371 TTVPDDLDGIYESIKENALLAKYAGGLGNDWTAVRAMGARIKGTNGKSQGVVPFLKVVSD 430 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAVNQGGKRKGAVCAYLE WH+D+EEFL+LRKNTGDDRRRTHDMNTA WIPDLFMKRV Sbjct: 431 TAVAVNQGGKRKGAVCAYLECWHLDIEEFLELRKNTGDDRRRTHDMNTATWIPDLFMKRV 490 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + WTLFSP +V DLH+ +G++FE AY YE + +RGE+++++KI AV LWRKML+ML Sbjct: 491 MEGGDWTLFSPSDVPDLHEKFGQQFEQAYLGYEARIERGELELYKKIPAVQLWRKMLSML 550 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 FETGHPWITFKDPCN+RSPQ H+GVVHSSNLCTEITLN++ +E AVCNLGS+NL+AH + Sbjct: 551 FETGHPWITFKDPCNVRSPQNHIGVVHSSNLCTEITLNTNDKEIAVCNLGSVNLVAHLKD 610 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D DKL TI +R+LDNVIDIN + + KA+ +N HR +GLG+MGFQ LH L IP Sbjct: 611 GALDLDKLKRTIHVVMRMLDNVIDINFYAVAKARNANLKHRPVGLGIMGFQDCLHQLGIP 670 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y SP AVE AD SME +++ A AS ELAQERG YS++KGSLWD+G+ P D++ +L + R Sbjct: 671 YGSPAAVEFADRSMEAVAYQAYWASTELAQERGCYSTYKGSLWDRGILPHDTLTVLQQER 730 Query: 734 -DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + ++ L WD L++R+K GMRNSNC+AIAPTATI+NI GVS SI+P+YQNLYVK Sbjct: 731 GGYVEADLSATLDWDALRQRIKLHGMRNSNCLAIAPTATISNIVGVSASIEPTYQNLYVK 790 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 SN+SG+FT+ N LVN+LK+ +LWDE MISDLKY DG+I I+RIPD+++ ++ATAFE+D Sbjct: 791 SNLSGEFTITNRSLVNDLKKLNLWDEVMISDLKYFDGAISKIDRIPDNIRTLYATAFEMD 850 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 P+WLIE+ +RRQKWIDQ+QSLN+Y+ SGKKLD Y+ AWL GLKTTYYLRS AT+ E Sbjct: 851 PLWLIEAGARRQKWIDQSQSLNIYMGGVSGKKLDETYKLAWLRGLKTTYYLRSMGATAAE 910 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSL----GIPSSCTSDTECEVCQ 954 KST++ G LNAVP I D CE CQ Sbjct: 911 KSTVRA--GSLNAVPADGGIVKAAVEVSTVEIKYCAIDDESCESCQ 954 >gi|270156778|ref|ZP_06185435.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella longbeachae D-4968] gi|289164773|ref|YP_003454911.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella longbeachae NSW150] gi|269988803|gb|EEZ95057.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella longbeachae D-4968] gi|288857946|emb|CBJ11806.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Legionella longbeachae NSW150] Length = 941 Score = 961 bits (2483), Expect = 0.0, Method: Composition-based stats. Identities = 562/939 (59%), Positives = 693/939 (73%), Gaps = 16/939 (1%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 L P ++ IKRNG V ++D +KI AI KAF+A EG AS S R+ I+ LT Sbjct: 18 ELTANAPGL---LKTIKRNGKVVNYDDTKIKIAITKAFIADEGGTASTSDRIHQQIEELT 74 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 Q + S VHIEDIQDQVE +LM+SGH+K+ R YVLYREE R + K Sbjct: 75 RQITQVFKRRLPSGGAVHIEDIQDQVELALMRSGHYKVARAYVLYREEHRKARE--NELK 132 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 A L I M DG L +++R++ IV EAC L+ V ++ V+ + +N+Y+ + Sbjct: 133 KQASDQKLLLITMPDGELKPLDTERMDTIVHEACRNLEHVDAEPVIKDALRNLYNEAKFA 192 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ ALI ++RTL+EKEPNY V+AR LL+ LR E L + AT EM LYP YF Sbjct: 193 DVHKALIMAARTLVEKEPNYTYVSARLLLDCLRIEALHKL-GIEADATFDEMSQLYPAYF 251 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 Y+ G+K +L E M DFDL L L ERD F YL LQ LYDRYF+H G R E+ Sbjct: 252 KIYVAHGIKQGMLDEKMADFDLEKLGKALLPERDMKFTYLSLQTLYDRYFIHDQGIRYEL 311 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQAFFMRVAMGLA++E +K ++A+EFY LLSSF +M STPTLFNSGT PQLSSC+LTTV Sbjct: 312 PQAFFMRVAMGLAIREKDKNEKAIEFYQLLSSFDYMSSTPTLFNSGTIRPQLSSCYLTTV 371 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD L GI+ A+++NA+L+KY+GGLGNDWTPVR +G+HI GTNGKSQGV+PFL VA+ TAV Sbjct: 372 PDHLDGIYSAIKDNALLSKYAGGLGNDWTPVRAMGSHIKGTNGKSQGVVPFLNVADATAV 431 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLE WH DVEEFL+LRKNTGDDRRRTHDMNTA WIPDLFM RV ++ Sbjct: 432 AVNQGGKRKGAVCAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMMRVRED 491 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 A WTLFSPDEV +LHD +GK FE Y YE +A +G +K + +SAV LWRKML+MLFET Sbjct: 492 ADWTLFSPDEVPELHDQFGKAFEALYNKYEEKAHQGLMKNVKTVSAVKLWRKMLSMLFET 551 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGSINL AH N + Sbjct: 552 GHPWMTFKDPCNLRSPQQHCGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKNGKL 611 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KL TI+TAVR+LDNVIDIN +++ +A+ SN HR +GLGLMGFQ AL+ L I YAS Sbjct: 612 DIEKLKQTIKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYELKIDYAS 671 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DE 735 EAVE AD SME IS++AI AS +LA+ERG+YSS++GSLW +G+ PIDSI LL + R Sbjct: 672 EEAVEFADSSMELISYYAIEASCDLAKERGSYSSYEGSLWSKGILPIDSINLLQQARNKY 731 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 L +R+ RL W+ L+ +V+T GMRNSN MAIAPTATI+NICGV+QSI+P+YQNLYVKSN+ Sbjct: 732 LEQDRSQRLDWESLRIKVRTQGMRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNL 791 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+FTV+N +LV +LK +LWDE M++DLKY +GS+ I RIP DLKK +AT+FEIDP+W Sbjct: 792 SGEFTVINPYLVADLKALELWDEVMVNDLKYFNGSVQPISRIPADLKKRYATSFEIDPIW 851 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 L+++ASRRQKWIDQAQSLN+Y+ EPSGKKLD +Y AW+ GLKTTYYLRS A++ EKST Sbjct: 852 LVDAASRRQKWIDQAQSLNIYMAEPSGKKLDQLYMHAWIRGLKTTYYLRSMGASNAEKST 911 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + D LNAV + + + D +CE CQ Sbjct: 912 V--TDSALNAVKI-------MTEAPKACSILDPDCEACQ 941 >gi|319764327|ref|YP_004128264.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus denitrificans BC] gi|330826375|ref|YP_004389678.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus denitrificans K601] gi|317118888|gb|ADV01377.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus denitrificans BC] gi|329311747|gb|AEB86162.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus denitrificans K601] Length = 970 Score = 960 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 536/973 (55%), Positives = 682/973 (70%), Gaps = 34/973 (3%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 + + P+ Q+I+RNG V F+P KI+ A+MKAF+AV G + Sbjct: 10 TAPSTQPHAADAPATDASG-GVFSHYQIIRRNGAVVPFEPQKIAVAMMKAFLAVHGTQGA 68 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S V++++ LT+ V L++ S HIED+QDQVE LM+ HH++ R YVLYRE Sbjct: 69 ASASVREVVDELTQAVVRALMRSRPSGGTFHIEDVQDQVELGLMRGSHHEVARAYVLYRE 128 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVL 182 R+ RA + P P L ++ G I + RL+ ++E AC+ L DV + + Sbjct: 129 RRAQERAQKKEQL--LPQMPALYVLDK-GQRIELDILRLQALIESACANLGSDVQAAPIA 185 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 +ET +N+YDG+ ++ A I ++RTLIEK+P Y TAR LL + REVL Sbjct: 186 AETLRNLYDGVPMDEVYKASILAARTLIEKDPGYTYATARLLLHTIVREVLGQ------D 239 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 M Y F ++I +GV LL ++DFDL L LK RD F+YLGLQ LY Sbjct: 240 VAPAGMAAAYAANFPQFIRKGVDNELLDPRLLDFDLQRLGQALKAGRDLQFDYLGLQTLY 299 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK----RAVEFYNLLSSFHFMCSTPTL 358 DRYFLH+ +RIE+PQAFFMRVAMGLAL+E + + RA+EFY LLSSF FM STPTL Sbjct: 300 DRYFLHVKKTRIELPQAFFMRVAMGLALREGDPKTTGSARAIEFYELLSSFDFMSSTPTL 359 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT QLSSC+LTTVPD+L GI+ +++ENA+L+K++GGLGNDWT VR LGA I GTN Sbjct: 360 FNSGTLRSQLSSCYLTTVPDELGGIYESIKENALLSKFAGGLGNDWTRVRALGARIKGTN 419 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 G+SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLE+WH+DVEEFL+LRKNTGDDRRRTHD Sbjct: 420 GESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLESWHLDVEEFLELRKNTGDDRRRTHD 479 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 MNTANWIPDLFMKRV WTLFSP +V DLHDLYG+ FE AY YE + D GE+++F+ Sbjct: 480 MNTANWIPDLFMKRVMDKGQWTLFSPSDVPDLHDLYGQAFERAYTAYEAKVDSGELQLFK 539 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 ++ AV LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ETA Sbjct: 540 RVPAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETA 599 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNLGS+NL H + D+DKL T+ TA+R+LDNVIDIN + ++KA+ SN HR +GL Sbjct: 600 VCNLGSVNLARHLKDGAIDHDKLRKTVSTAMRMLDNVIDINYYAVDKARDSNLRHRPVGL 659 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 GLMGFQ AL+ L IPY+S AV ADESME I ++A AS ELA+ERG YSS++GSLW + Sbjct: 660 GLMGFQDALYELRIPYSSDAAVTFADESMEAICYYAYWASTELARERGTYSSYEGSLWSK 719 Query: 719 GVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G+ P+DS+ LLA+ R + ++RT+RL WD L+ ++ GMRNSNC+AIAPTATI+NI G Sbjct: 720 GILPLDSLELLAKERGGYVEVDRTTRLDWDALRSKITQDGMRNSNCIAIAPTATISNIVG 779 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 V SI+PS+ NL VKSN+SG+FTV+N +LV +LK+ LWD+ M+ DLK+ GS+ I+R+ Sbjct: 780 VDASIEPSFGNLSVKSNLSGEFTVINQYLVRDLKKLGLWDDVMLMDLKHFKGSLHAIDRV 839 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P ++K ++ATAFE+ P WL+E+A+RRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GL Sbjct: 840 PQNVKALYATAFEVAPAWLVEAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGL 899 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS----------------THSLGIP 941 KTTYYLR++SAT VE ST+ +LNAV + S + + Sbjct: 900 KTTYYLRTQSATHVEMSTVNTR--QLNAVSAGTDSQSGALNAAAAAAQTQAGALPATDVK 957 Query: 942 SSCTSDTECEVCQ 954 D CE CQ Sbjct: 958 FCAIDDPSCEACQ 970 >gi|302877616|ref|YP_003846180.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella capsiferriformans ES-2] gi|302580405|gb|ADL54416.1| ribonucleoside-diphosphate reductase, alpha subunit [Gallionella capsiferriformans ES-2] Length = 944 Score = 960 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 547/958 (57%), Positives = 686/958 (71%), Gaps = 30/958 (3%) Query: 11 DEDAFPSLAYPFPEKIKG------VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + + P+ + +V++RNG V F+P+KIS A+ KAF+AV G A+ Sbjct: 3 NAASAPTSLSSAAGDKEANSSFDLYKVVRRNGSVVVFEPAKISVALTKAFIAVSGGPAAA 62 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S RV++++ LT+ V L++ +HIEDIQDQVE LM+SG H + R YVLYREE Sbjct: 63 SARVRELVDQLTQGVVIALMRRQPHGGTLHIEDIQDQVELGLMRSGEHDVARAYVLYREE 122 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLS 183 S RA A + + DG + + RL ++V+ AC GL +V +++VL Sbjct: 123 HSRSRAQ----TQVQQPAHVINVTGKDGVVQPLDLARLSVLVQSACEGLGEVVDAELVLQ 178 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 K+MYDG+ ++ LI S+R++IEKEP Y VTAR LL + EVL + Sbjct: 179 VALKDMYDGVPLHEVHKCLILSARSMIEKEPAYNFVTARLLLNNICSEVLG------EDV 232 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 +M Y +YF ++I+ G+ A LL E + FDL LA +L RD F YLGLQ LYD Sbjct: 233 APADMATRYADYFPKFIKRGIAAELLDEKLAGFDLPRLAAELDASRDLQFGYLGLQTLYD 292 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYFLHI G+RIE PQ FFMRVAMGLAL E ++E RA+EFY LLS F FMCSTPTLFNSG+ Sbjct: 293 RYFLHIGGTRIEAPQVFFMRVAMGLALNEIDREARAIEFYRLLSGFDFMCSTPTLFNSGS 352 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 R QLSSC+L+TV D+L GI+ A+++NA+LAK++GGLGNDWTPVR LGAHI GTNG+SQG Sbjct: 353 RRSQLSSCYLSTVEDNLEGIYDAIKDNALLAKFAGGLGNDWTPVRALGAHIKGTNGESQG 412 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNT+N Sbjct: 413 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTSN 472 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV + WTLFSP +V DLHDL+G +FEIAY YE +A G+IK+++ + A Sbjct: 473 WIPDLFMKRVMEGGNWTLFSPSDVKDLHDLFGIDFEIAYTAYEEKAAAGQIKLYKTVQAA 532 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++++E AVCNLG Sbjct: 533 SLWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNADEIAVCNLG 592 Query: 604 SINLLAHFANNQF------DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 S+NL AH D+ KL TI TA+R+LDNVIDIN + + KA+ SN HR +G Sbjct: 593 SVNLPAHLYPEGHDLAGQIDHAKLRRTINTAMRMLDNVIDINYYAVAKARNSNLKHRPVG 652 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G+MGFQ LH L +PY+S EAVE AD SME + ++A AS ELA+ERG Y+S+KGSLWD Sbjct: 653 MGIMGFQDCLHQLRLPYSSMEAVEFADRSMEAVCYYAYWASTELAEERGRYASYKGSLWD 712 Query: 718 QGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G+ P D++ LL E R + ++ + + WD L+ R+ GMRNSNC+AIAPTATI+NI Sbjct: 713 CGILPQDTLDLLREERGGYVEVDTSVSMDWDALRARIGQYGMRNSNCVAIAPTATISNII 772 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 GVS I+P+YQNL+VKSN+SG+FTV+N LV ELK+ LWDE MISDLKY DGS+ I+R Sbjct: 773 GVSACIEPTYQNLFVKSNLSGEFTVINDHLVAELKRLGLWDEVMISDLKYFDGSLAKIDR 832 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 IP +L+ ++ATAFE++P WLIE+ASRRQKWIDQAQSLN+Y+ SG+KLD Y+ AW+ G Sbjct: 833 IPAELRSLYATAFEVEPSWLIEAASRRQKWIDQAQSLNIYMAGVSGRKLDDTYKLAWVRG 892 Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 LKTTYYLR+ ATS EKST G G LNAV V D + + ECE CQ Sbjct: 893 LKTTYYLRTLGATSAEKST--GRAGALNAVSVGD----APAETTQFCSIDNPECEACQ 944 >gi|33593915|ref|NP_881559.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella pertussis Tohama I] gi|33563989|emb|CAE43254.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella pertussis Tohama I] gi|332383334|gb|AEE68181.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella pertussis CS] Length = 975 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 543/979 (55%), Positives = 699/979 (71%), Gaps = 39/979 (3%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P+ E + P + +I+RNG V F+PSKI+ A+ KAF+AV G Sbjct: 10 RPTAVPPAQSETS----TDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQ 65 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+++++ LT Q V+ L+++ + HIED+QDQVE +LM+SG H + R YVLY Sbjct: 66 GAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLY 125 Query: 122 REERSDVRAAQ----SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDV 176 RE R+ RAA S A P L ++ D+G + L +E A GL Q Sbjct: 126 RERRAQERAAAAEVLEKSSPAAAQEPTLSVV-DNGVRRPLDLAALRATIEAAGEGLTQYT 184 Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236 ++ +L ET KN+YDG+ ++ + I ++R L+EK+P Y++VTAR LL +R+EVL Sbjct: 185 DTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEVLG-- 242 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 ++ + +M Y EYF +I+ G++ LL + ++DL +A L RD F YL Sbjct: 243 ----EEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYL 298 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 GLQ LYDRYFLH+ G+RIE+PQ FFMRVAMGLAL+E ++E RA+EFY +LSSF FM STP Sbjct: 299 GLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTP 358 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TLFNSGT H QLSSC+LTTV DDL GI+ A++ENA+LAKY+GGLGNDWTPVR L +HI G Sbjct: 359 TLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAGGLGNDWTPVRALRSHIKG 418 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGD+RRRT Sbjct: 419 TNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRT 478 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANWIPDLFMKRV +N WTLFSP + DLHD YGK FE AY YE + GE+K+ Sbjct: 479 HDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKL 538 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 F+K+ AV+LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+++ E Sbjct: 539 FKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATE 598 Query: 597 TAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 AVCNLGS+NL+AH N ++DKL TI A+R+LDNVIDIN + ++KA+ SN Sbjct: 599 IAVCNLGSVNLVAHMKPNANGGYELNHDKLKRTIGVAMRMLDNVIDINYYAVDKARNSNE 658 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 HR +G+G+MGFQ LH++ +PYAS +A++ AD SME + +HA AS ELAQERG Y S+ Sbjct: 659 RHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSY 718 Query: 712 KGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 +GSLW +G+ P D++ +L E R + ++ +S L WD L+ R+K GMRNSNC+AIAPTA Sbjct: 719 EGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTA 778 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 TI+NI G S I+P++QNLYVKSN+SG+FTVVN +LV +LK+ LWDE M++DLKY DGS Sbjct: 779 TISNIIGASACIEPTFQNLYVKSNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGS 838 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 + I+R+P +L+K++ATAFE++P WL+E ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ Sbjct: 839 LSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQSLNIYMSGASGKKLDDTYK 898 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP--------- 941 AW GLKTTYYLR+ ATS EKST +G G+LNAV D + + P Sbjct: 899 LAWQRGLKTTYYLRTLGATSAEKSTGRG--GELNAVSAGDHGAGSAVSAAPVLPEPEIVG 956 Query: 942 SSCTSDT------ECEVCQ 954 + CT ECE CQ Sbjct: 957 AVCTMRPGDPGFEECEACQ 975 >gi|329902474|ref|ZP_08273119.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548766|gb|EGF33403.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 969 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 550/947 (58%), Positives = 688/947 (72%), Gaps = 26/947 (2%) Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 + ++++RNG V +F+PSKIS A+ KAF+AV G + S RV+++++ LT V L Sbjct: 33 AALADYRILRRNGAVVAFEPSKISIAVTKAFLAVNGGQGAASARVRELVEQLTATVVAAL 92 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143 ++ + HIEDIQDQVE +LM+SG H + R YVLYR +R + RA Q ++ A Sbjct: 93 VRRQPAGGTFHIEDIQDQVELALMRSGEHDVARAYVLYRAKRMEERALQQAARPAAASV- 151 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202 +L + +DG + +++ +++ AC GL+ V + + +ET KN+YDG+ +L + Sbjct: 152 QLHVT-EDGQRRLLDMQQVHKLIDAACIGLEKHVDANAIFAETVKNLYDGVPVEELHKSA 210 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R L+EK+P Y VTAR L+ +R+EV ++ + Q Y EYF ++I Sbjct: 211 ILAARALMEKDPAYTTVTARILMHVIRKEVFG------KEVAQADAQAHYLEYFPQFIHN 264 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G+ A LL + FDL LA L +RD F Y+GLQ LYDRYFLHI RIEMPQAF+M Sbjct: 265 GIAAELLDAKLAGFDLDRLAKALVPDRDLQFGYIGLQTLYDRYFLHIRDIRIEMPQAFYM 324 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E ++E+RA+EFYNLLSSF FM STPTLFNSGT QLSSC+LTTV DDL G Sbjct: 325 RVAMGLALNEAKREERAIEFYNLLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLEG 384 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ A+++NA+LAKY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV NDTAVAVNQGG Sbjct: 385 IYDAIKDNALLAKYAGGLGNDWTPVRSLGAHIKGTNGKSQGVVPFLKVVNDTAVAVNQGG 444 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV + W LF Sbjct: 445 KRKGAVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGSWMLF 504 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP EV DLHD G+ FE AY YE A RGE+++F+K+ A+ LWRKML+MLFETGHPWIT Sbjct: 505 SPSEVPDLHDKVGRAFEAAYTGYEAAAARGELRMFKKVEALDLWRKMLSMLFETGHPWIT 564 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL AH + Q D+ KL Sbjct: 565 FKDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLPAHMKDGQLDHVKLQ 624 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TIR A+R+LDNVIDIN + ++KA+ SN HR +GLG+MGFQ LH++ +PYAS EAV Sbjct: 625 KTIRIAMRMLDNVIDINYYAVQKARDSNMRHRPVGLGIMGFQDCLHIMRVPYASAEAVSF 684 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRT 741 AD+SME + ++A +AS ELA+ERGAYSS+KGSLWD+G+ P DS+ LL E R L + + Sbjct: 685 ADKSMEAVCYYAYTASTELAEERGAYSSYKGSLWDRGILPQDSLKLLMEERGGYLETDLS 744 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + W L+ R+K GMRNSNC+AIAPTATI+NI GV+ I+P+YQNLYVKSN+SG+FT Sbjct: 745 EAMDWTPLRARIKQFGMRNSNCVAIAPTATISNIIGVAACIEPTYQNLYVKSNLSGEFTE 804 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +N +LV +LK RDLWDE MISDLKY DGS+ I+R+P +L+ I+ATAFEI+P WL+E+AS Sbjct: 805 INEYLVRDLKARDLWDEVMISDLKYFDGSLARIDRVPQELRAIYATAFEIEPSWLVEAAS 864 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 RRQKWIDQAQSLN+Y+ SGKKLD Y+ AWL GLKTTYYLR+ AT EKST K G Sbjct: 865 RRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKTTYYLRTIGATHTEKSTSK--TG 922 Query: 922 KLNAVPVTDPNSSTHSLG--------IPSSCTSDT------ECEVCQ 954 LNAV +S SC ECE CQ Sbjct: 923 SLNAVSADGVSSGVALSAYTTAGADVDGPSCVLRPGDDGFEECEACQ 969 >gi|297538243|ref|YP_003674012.1| ribonucleoside-diphosphate reductase subunit alpha [Methylotenera sp. 301] gi|297257590|gb|ADI29435.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylotenera sp. 301] Length = 938 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 561/937 (59%), Positives = 692/937 (73%), Gaps = 18/937 (1%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + +QVI+RNG F KIS AI KAF+AVEG + S RV+D + L++ L+ Sbjct: 13 SLPTLQVIRRNGAAVQFTLDKISIAITKAFLAVEGNQSGASQRVRDQVATLSQLVNNALM 72 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 + + +HIEDIQDQVE +LM++G+H + R YVLYRE+R+ RAA+ S ++ Sbjct: 73 RRLPAGGSIHIEDIQDQVELALMRNGNHDVARAYVLYREKRNAERAAEKASHPTTELSHT 132 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203 L + DG LI + K+L +V EAC L DV + IV+ + +++YDG+ +++ ALI Sbjct: 133 LNV-NIDGKLIPLDIKQLNEMVGEACLNLGDVVNPSIVVEQAVRDLYDGIPFTEVYKALI 191 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+R+LIE EP Y VTAR L+ +R EVL ++ +H +M Y EYF RYI+ G Sbjct: 192 LSARSLIETEPAYNYVTARLQLDLVRAEVLG------ERVSHAQMDEHYAEYFPRYIKMG 245 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + A LL + FDL LA L +RDF F YLG+Q LYDRYFLHI RIE+PQ FFMR Sbjct: 246 INAELLDSRLAQFDLTKLAAALNKDRDFQFGYLGIQTLYDRYFLHIEERRIELPQIFFMR 305 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VAMGLA+ E ++E RA+EFYN+LSSF FM STPTLFN+GT H QLSSC+LTTV DDL GI Sbjct: 306 VAMGLAINEIDRESRAIEFYNVLSSFDFMSSTPTLFNAGTLHSQLSSCYLTTVSDDLDGI 365 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ENAML KY+GGLGNDWTPVR LGA I GTNGKSQGVIPFLKV NDTAVAVNQGGK Sbjct: 366 YQGIKENAMLQKYAGGLGNDWTPVRSLGARIKGTNGKSQGVIPFLKVVNDTAVAVNQGGK 425 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGAVC YLETWH+D+EEFLDLRKNTGDDRRRTHDMNTA+WIPDLFM+RVT+ WTLFS Sbjct: 426 RKGAVCGYLETWHLDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDLFMRRVTEAGDWTLFS 485 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P +V DLHD YGK FE AY YER+A+ GEIK+F+KI A+ +WRKML+MLFETGHPWITF Sbjct: 486 PSDVPDLHDKYGKAFETAYVEYERRAENGEIKLFKKIPALQMWRKMLSMLFETGHPWITF 545 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----DYD 619 KDPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NLL H A D D Sbjct: 546 KDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLLQHLAEVNGKLVLDND 605 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL +TI+ +R+LDNV+DIN + + KA+ +N HR +G+G+MGFQ+ LH + IPYAS EA Sbjct: 606 KLQATIKIGMRMLDNVVDINFYPVGKARNANTRHRPVGMGIMGFQNCLHAMRIPYASMEA 665 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAM 738 VE AD +ME + ++A AS LA+ER AYSSFKGSLWDQG+ P+D++ LL R + + Sbjct: 666 VEFADRAMEMVCYNAYYASTVLAEERAAYSSFKGSLWDQGILPLDTLDLLLNERGGNVEV 725 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +R+ L WD L+ R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG+ Sbjct: 726 DRSKTLDWDALRNRIQKVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSGE 785 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FT+VN LV +LK R LWD M+SDLKY DGS+ I+R+P DLK+++ATAF++DP WLIE Sbjct: 786 FTIVNEQLVIDLKARGLWDAVMVSDLKYFDGSLQKIDRVPADLKQLYATAFDVDPTWLIE 845 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 +A+RRQKWIDQAQSLNLY PSGKKL+ Y AW GLKTTYYLRS AT+ EKST G Sbjct: 846 AAARRQKWIDQAQSLNLYFAVPSGKKLNDTYLLAWQRGLKTTYYLRSMGATAAEKST--G 903 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 G+LNAV + L P C+ D ECE CQ Sbjct: 904 SGGELNAVSAGLEEAPKEYL--PKVCSIDNPECESCQ 938 >gi|114332418|ref|YP_748640.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas eutropha C91] gi|114309432|gb|ABI60675.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosomonas eutropha C91] Length = 957 Score = 955 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 545/959 (56%), Positives = 691/959 (72%), Gaps = 16/959 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 PS P + +VI+RNG V +F+P KIS A+ KAF+AV G Sbjct: 8 PSSSSILQKNFLGEMTDSPATRQDYSQYKVIRRNGAVVAFEPGKISIAMTKAFIAVRGGQ 67 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 ++ S +++I+ LT + V L + HIEDIQDQVE +LM+SG H + R YVLY Sbjct: 68 SAASSSMREIVAQLTGEVVHALTRRRPGGGTFHIEDIQDQVELALMRSGDHDVARAYVLY 127 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKI 180 REER+ RA Q + A L I+ ++G I + RL +E AC L +V ++ + Sbjct: 128 REERARERARQQKEPPTSTQAAVLHIV-ENGQRIPLDPSRLTARIESACQHLGNVVNAGL 186 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 ++ +++YDG+ ++ + I S+R LIEKEP Y+ VTAR LL+ +R EVL Sbjct: 187 IVKAMLRDLYDGVPAEEVRKSAILSARALIEKEPAYSFVTARLLLDNIRHEVLG------ 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + +H MQ Y +YF +I +G++A LL E + FDL L+ L +RD F YLGLQ Sbjct: 241 EDVSHEAMQSRYADYFPGFIRQGMEAGLLDERLGQFDLARLSETLIADRDLQFGYLGLQT 300 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLHI+ RIE+PQAFFMRVAMGLAL E ++E RA+EFY+LLS+F FM STPTLFN Sbjct: 301 LYDRYFLHISERRIELPQAFFMRVAMGLALNEIDREARAIEFYHLLSTFDFMSSTPTLFN 360 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTR QLSSC+L+TVPD L GI+ A++ENA+L+K++GGLGNDWTPVR +GA I GTNGK Sbjct: 361 SGTRRSQLSSCYLSTVPDSLDGIYEAIKENALLSKFAGGLGNDWTPVRAMGARIKGTNGK 420 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV +DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 421 SQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 480 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TA W+PDLFMKR+ ++ WTLFSP + DLH+ YGK FE AY YE QA +G + + ++I Sbjct: 481 TAVWVPDLFMKRMLEDQEWTLFSPSDTPDLHEKYGKAFEEAYIAYEEQATQGRLALHKRI 540 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKMLTMLFETGHPWITFKDPCNIRSPQ HVGVVHSSNLCTEITLN++ +E AVC Sbjct: 541 PARQLWRKMLTMLFETGHPWITFKDPCNIRSPQNHVGVVHSSNLCTEITLNTNEKEIAVC 600 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINL AH + + D KL T+ TA+R+LDNVIDIN + + KA+ +N HR +GLG+ Sbjct: 601 NLGSINLPAHIVDGKLDLTKLKQTVATAMRMLDNVIDINFYAVAKARNANLRHRPVGLGI 660 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ LH L I YAS EAVE AD SME +++H AS ELA+ERG Y+++ GSLW++G+ Sbjct: 661 MGFQDCLHKLGISYASREAVEFADSSMEAVAYHTYWASTELAEERGTYATYHGSLWERGI 720 Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P DS+ LL E R + ++ +S L W L++R+K GMRNSNC+AIAPTATI+NI GVS Sbjct: 721 LPQDSLALLQEERGGHVEVDTSSTLDWTPLRERIKQYGMRNSNCLAIAPTATISNIIGVS 780 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI+P+YQNLYVKSN+SG+FTVVN LVN+LK++DLWDE MI+DLK++DG+ I+RIP+ Sbjct: 781 ASIEPTYQNLYVKSNLSGEFTVVNQSLVNDLKKQDLWDEVMIADLKHYDGAASKIDRIPE 840 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +L+ ++ATAFEIDP WL+E+A+RRQKWIDQAQSLNLY+ SGKK+D +YR AWL GLKT Sbjct: 841 NLRALYATAFEIDPRWLVEAAARRQKWIDQAQSLNLYMSGASGKKMDDLYRLAWLRGLKT 900 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVT----DPNSSTHSLGIPSSCTSDTECEVCQ 954 TYYLR+ AT+ EKST+ G LNAVP +S D ECE CQ Sbjct: 901 TYYLRAMGATTAEKSTVH--TGTLNAVPAQQNGHTDSSGQIHSATKQCAIDDPECEACQ 957 >gi|288941564|ref|YP_003443804.1| ribonucleoside-diphosphate reductase subunit alpha [Allochromatium vinosum DSM 180] gi|288896936|gb|ADC62772.1| ribonucleoside-diphosphate reductase, alpha subunit [Allochromatium vinosum DSM 180] Length = 985 Score = 954 bits (2466), Expect = 0.0, Method: Composition-based stats. Identities = 566/975 (58%), Positives = 707/975 (72%), Gaps = 23/975 (2%) Query: 2 HPSKDV---NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58 HP++ + P A VQVI+RNG +T FDPSKI A+ KAF+AVE Sbjct: 12 HPAQARHADPSASQTTTPDSAESTGHIPGRVQVIRRNGQITHFDPSKIMVAMTKAFLAVE 71 Query: 59 GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREY 118 G A S R+ D + LTEQ V L + VHIEDIQDQVE +LM++G H+I R+Y Sbjct: 72 GDSAGASSRIHDRVAELTEQVVGALTRRLSGGGTVHIEDIQDQVELALMRAGEHRIARDY 131 Query: 119 VLYREERSDVRAAQSHSKSDAPIAPK-LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS 177 VLYRE R+ RAA+S +++ A P + + + DG+ + + ++EE+C L V Sbjct: 132 VLYREARARERAARSAAETAAIREPHPINVTLADGSTRPLDVAHMARLLEESCRDLDAVD 191 Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY 237 +LS+T +N++DG+ E+D+ AL+ S+RTLIE+EP Y++ AR LL+ LRRE L + Sbjct: 192 PNAILSDTLRNLFDGVREADVRQALVMSARTLIEREPQYSQAAARLLLDILRREALGFLD 251 Query: 238 KKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLG 297 T +M Y +YF YI+ L + +DL L LK ERD F YLG Sbjct: 252 LAVGVETQADMAERYGDYFAAYIKRAADLEHLDGQLARYDLKRLGAALKPERDLQFTYLG 311 Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 LQ LYDRYF+H +G R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FMCSTP Sbjct: 312 LQTLYDRYFIHTADGIRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMCSTP 371 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TLFNSG+ PQLSSCFLTTVPDDL GI+ A+++NA+L+K++GGLGNDWT VRG+GAHI G Sbjct: 372 TLFNSGSPRPQLSSCFLTTVPDDLDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKG 431 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNGKSQGVIPFLKVANDTA+AVNQGG+R+GAVCAYLETWHID+EEFLDLRKNTGDDRRRT Sbjct: 432 TNGKSQGVIPFLKVANDTAIAVNQGGRRRGAVCAYLETWHIDIEEFLDLRKNTGDDRRRT 491 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANW+PDLFMKRV ++ WTLFSPDE DLHDL G+ FE AY YE +A RGE+K+ Sbjct: 492 HDMNTANWVPDLFMKRVAEDGHWTLFSPDETPDLHDLTGQAFEQAYVAYEERAARGELKI 551 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 +++ AV LWRKML MLFETGHPWI FKDPCN+R QHVGVVHSSNLCTEITL+++ E Sbjct: 552 SKRLKAVDLWRKMLAMLFETGHPWIAFKDPCNLRYTNQHVGVVHSSNLCTEITLHTNDLE 611 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 AVCNLGSINL AH + D +L T+RTA+R+LDNVID N + + +A+ SN HR + Sbjct: 612 AAVCNLGSINLAAHITDKGLDTQRLRRTVRTAMRMLDNVIDYNFYNVPQARASNLRHRPV 671 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLGLMGFQ AL+ L IPYAS EAV AD+S E++S++AI AS +LA ERG Y SF+GSLW Sbjct: 672 GLGLMGFQDALYRLRIPYASQEAVAFADQSTEYLSYYAIEASADLAAERGRYPSFEGSLW 731 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 QGV PIDSIGL+ + R L M+ + L WD L++R++T+GMRNSNC+AIAPTATI+NI Sbjct: 732 SQGVLPIDSIGLMEQGRGGYLQMDTSHTLDWDRLRERIQTVGMRNSNCLAIAPTATISNI 791 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 GVSQSI+P+YQNL+VKSN+SG+FTVVN +LV +LK+R LWD M++DLKY+DGS+ I+ Sbjct: 792 VGVSQSIEPTYQNLFVKSNLSGEFTVVNPYLVADLKERGLWDAVMVNDLKYYDGSLLPID 851 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIPD+LK+++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ Sbjct: 852 RIPDELKELYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMQEPSGKKLDNLYKLAWVR 911 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS------------- 942 GLKTTYYLRS AT VEKST+ G+ N + N PS Sbjct: 912 GLKTTYYLRSMGATHVEKSTM-ADTGRANRLSAVGGNYLGRQTAKPSDTTDDTPAAATAT 970 Query: 943 ---SCTSDTECEVCQ 954 D +CE CQ Sbjct: 971 PSACSILDPDCEACQ 985 >gi|158341283|ref|YP_001522353.1| ribonucleotide-diphosphate reductase subunit alpha [Acaryochloris marina MBIC11017] gi|158311524|gb|ABW33135.1| ribonucleotide-diphosphate reductase, alpha subunit [Acaryochloris marina MBIC11017] Length = 960 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 543/960 (56%), Positives = 684/960 (71%), Gaps = 33/960 (3%) Query: 14 AFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIK 73 P +VI+RNG V F+ KI+ A+ KAF+AV+G + S RV++++ Sbjct: 15 LPPIQGGSVEGLDAEYKVIRRNGSVVGFEADKIAIAMTKAFLAVKGVQSGVSARVRELVA 74 Query: 74 NLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS 133 LT VT L + + HIEDIQDQVE +LM+SG H + R YVLYRE+RS R Q Sbjct: 75 TLTTNVVTALKRRQPTGGTFHIEDIQDQVELALMRSGEHDVARAYVLYREKRSQKRTQQH 134 Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192 ++ +MD G + + +R +V+ AC L D VS K + E KN+YDG Sbjct: 135 GIEAAPIY------LMDGGDRVLLDLERFNDLVDSACINLGDTVSGKAIADEALKNIYDG 188 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 S +L + I ++R+ IEK+P+Y+KVTAR LL ++R+EVL + T EMQ Y Sbjct: 189 ASVVELHKSAILAARSHIEKDPDYSKVTARLLLHRIRQEVLGA------EVTQAEMQARY 242 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 EYF +I++G+ LL E + F+L L + L ERD F YLGLQ LYDRYFLH Sbjct: 243 AEYFPHFIQQGIATGLLDEKLAQFNLQKLGSVLVAERDLQFGYLGLQTLYDRYFLHTEDR 302 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 RIE+PQAFFMRVAMGLAL E ++E+RA EFY++LS F FM STPTLFNSGT QLSSC+ Sbjct: 303 RIELPQAFFMRVAMGLALNEIDREERAAEFYDILSKFDFMSSTPTLFNSGTVRSQLSSCY 362 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 LTTVPD L GI+ A+++NA+L+KY+GGLGNDWTPVR LGAHI GTNGKSQGV+PFLKV N Sbjct: 363 LTTVPDALDGIYSAIKDNALLSKYAGGLGNDWTPVRALGAHIKGTNGKSQGVVPFLKVVN 422 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHD+NTANWIPDLFMKR Sbjct: 423 DTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDINTANWIPDLFMKR 482 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ WTLFSPD V DLHD GKEFE AY YE+QA +GE+K F+ + A LWRKML+M Sbjct: 483 VMEDGDWTLFSPDIVPDLHDKVGKEFETAYLAYEQQAAKGELKPFKTVPANTLWRKMLSM 542 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWITFKDPCN+RSPQQH+G+VHSSNLCTE+TLN++ E AVCNLGS+NL+ H Sbjct: 543 LFETGHPWITFKDPCNVRSPQQHIGMVHSSNLCTEVTLNTNENEIAVCNLGSVNLVNHMV 602 Query: 613 ----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 Q D KL TI A+R+LDNVID+N + + A+ SN HR +GLG+MGFQ LH Sbjct: 603 EKNGQMQLDQAKLQHTITIAMRMLDNVIDLNYYAVSTARNSNLKHRPVGLGIMGFQDCLH 662 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +PYAS +AV+ AD +ME + ++A AS ELAQERG YS++KGSLWD+G+ P D++ L Sbjct: 663 QLRLPYASQDAVDFADRAMEAVCYYAYWASTELAQERGRYSTYKGSLWDRGILPQDTLAL 722 Query: 729 LAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 L EVR ++ +S + WD L+ R+ GMRNSNC+AIAPTATIANI GVS I+P+YQ Sbjct: 723 LKEVRGGFVEVDESSTMDWDLLRDRIAQHGMRNSNCVAIAPTATIANIIGVSACIEPTYQ 782 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NLYVKSN+SG+FTVVN +LV +LK R+LWDE MI+DLKY DGS+ I+RIP +L++++AT Sbjct: 783 NLYVKSNLSGEFTVVNEYLVRDLKVRELWDEVMIADLKYFDGSLAKIDRIPPELRQLYAT 842 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 AFE++P W++E+A+RR KWIDQAQSLN+Y+ SGKKLD IY+ AW GLKTTYYLRS Sbjct: 843 AFEVEPNWIVEAAARRSKWIDQAQSLNIYMAGASGKKLDQIYKLAWQRGLKTTYYLRSLG 902 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNS-------STHSLGIPSSCTSDT------ECEVCQ 954 AT VEKST LNAV ++ ++ S + C+ +CE CQ Sbjct: 903 ATHVEKST--APASSLNAVSNNGSSNGIGNILTTSKSENLGQVCSLSPGDANFDDCEACQ 960 >gi|30250347|ref|NP_842417.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrosomonas europaea ATCC 19718] gi|30181142|emb|CAD86335.1| Ribonucleotide reductase large subunit [Nitrosomonas europaea ATCC 19718] Length = 955 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 532/955 (55%), Positives = 688/955 (72%), Gaps = 10/955 (1%) Query: 3 PSKDVNKGDEDAFPSLAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 PS + P + ++I+RNG V +F+P KIS A+ KAF+AV G Sbjct: 8 PSSSPVQQKNFLEEMTDLPATRQNYSQYKIIRRNGAVVAFEPGKISIALTKAFIAVRGGQ 67 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 ++ S +++I+ LT + V L + HIEDIQDQVE +LM+SG H I R YVLY Sbjct: 68 SAASSSMREIVAQLTGEVVHALTRRRPEGGTFHIEDIQDQVELALMRSGDHDIARAYVLY 127 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKI 180 REER+ RA Q ++ + L ++ ++G I + +L +E AC L + V + + Sbjct: 128 REERARERARQQSAQPASGQVAVLHVV-ENGQKIPLDPAQLMARIESACQNLGNTVDAAL 186 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 ++ K++YDG+ ++ + I S+R LIEKEP Y+ VTAR LL+ +R EVL Sbjct: 187 IVKSMLKDLYDGVPAEEVRKSAILSARALIEKEPAYSFVTARLLLDNIRYEVLG------ 240 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ H MQ Y EYF ++ +G++A LL E + FDL L+ L +RD F YLGLQ Sbjct: 241 EEVAHEAMQSRYAEYFPEFVRKGIEAGLLDERLGQFDLARLSEALAADRDLQFGYLGLQT 300 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH++ RIE+PQ FFMRVAMGLAL E ++E RA+EFY+LLS F FM STPTLFN Sbjct: 301 LYDRYFLHVSERRIELPQIFFMRVAMGLALNEIDREARAIEFYHLLSKFDFMSSTPTLFN 360 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SGTR QLSSC+L+TVPD L GI+ A++ENA+L+K++GGLGNDWTPVR +GA I GTNGK Sbjct: 361 SGTRRSQLSSCYLSTVPDSLDGIYEAIKENALLSKFAGGLGNDWTPVRAMGARIKGTNGK 420 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV +DTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 421 SQGVVPFLKVVSDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMN 480 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TA W+PDLFMKR+ ++ WTLFSP + DLHD +G+ FE AY YE QA +G + +F++I Sbjct: 481 TAVWVPDLFMKRMQEDQEWTLFSPSDTPDLHDKFGRAFEEAYIAYEEQAAQGRLTLFKRI 540 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LWRKMLTMLFETGHPWITFKDPCNIRSPQ HVGVVHSSNLCTEITLN+S +E AVC Sbjct: 541 PARQLWRKMLTMLFETGHPWITFKDPCNIRSPQNHVGVVHSSNLCTEITLNTSEKEIAVC 600 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGS+NLLAH + + D +L T+ TA+R+LDNVIDIN + + KA+ +N HR +GLG+ Sbjct: 601 NLGSVNLLAHIVDGKLDQARLKQTVTTAMRMLDNVIDINFYAVAKARNANFRHRPVGLGI 660 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGFQ LH L I YASPEAVE AD SME +++H AS ELA+ERG Y++++GSLWD+G+ Sbjct: 661 MGFQDCLHKLGISYASPEAVEFADRSMEAVAYHTYWASTELAEERGTYATYRGSLWDRGI 720 Query: 721 FPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P D++ LL E R + ++ +S WD L+ R++ GMRNSNC+AIAPTATI+NI GVS Sbjct: 721 LPQDTLELLREERGGHVEIDTSSTQDWDALRDRIRQYGMRNSNCLAIAPTATISNIIGVS 780 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI+P+YQNLYVKSN+SG+FTVVN +LVN+LK++DLWDE MI+DLK++DG++ I+R+P+ Sbjct: 781 ASIEPTYQNLYVKSNLSGEFTVVNQWLVNDLKKQDLWDEVMIADLKHYDGAVSKIDRVPE 840 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +L+ ++ATAFE+DP WL+E+ASRRQKWIDQAQSLNLY+ SGKK+D +YR AWL GLKT Sbjct: 841 NLRNLYATAFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKMDELYRLAWLRGLKT 900 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 TYYLR+ AT+ EKST+ + + ECE CQ Sbjct: 901 TYYLRALGATTAEKSTVHTGTLNAVPAQHEAHAGNLAHSAPQQCAIDNPECEACQ 955 >gi|120556761|ref|YP_961112.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter aquaeolei VT8] gi|120326610|gb|ABM20925.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinobacter aquaeolei VT8] Length = 949 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 534/941 (56%), Positives = 688/941 (73%), Gaps = 31/941 (3%) Query: 18 LAYPFPEK-IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 P P + +QVIKRNG + SF+P+KIS A+ KAF+AVEG A+ S R+ D + +T Sbjct: 36 AEPPAPATDTQSLQVIKRNGTLVSFNPAKISVAVTKAFLAVEGDQAAGSARINDAVHRVT 95 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 EQ V + + K+ VHIEDIQDQVE +LM++ K+ R YVLYREE + RA Sbjct: 96 EQVVQAISRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARQRA----VD 151 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L + DG++ + ++ VE+A +GL ++ ++ + +N+YDG+ E+ Sbjct: 152 EPVEAHPHLTVKKADGSIAPLDLGLMKQQVEQASTGLDGINGDSLVEDALRNLYDGIEET 211 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 ++ +ALI ++R IE+EP+Y+ VTAR LLE+LR E + + +YP+ Sbjct: 212 EVLSALIMTARGRIEREPDYSAVTARLLLEQLRLET----AEALDLPRSLPLAEIYPQAL 267 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 +I G++ LL E++ FDL L N LK ERD F +LGLQ LYDRYFLH N +R+E+ Sbjct: 268 SAFIHAGIRYELLDEALAAFDLERLGNALKPERDLQFGFLGLQTLYDRYFLHWNKARLEL 327 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRVAMGLAL+E + RA+EFY LLSSF +M STPTLFNSGTRH QLSSC+LTTV Sbjct: 328 PQVFFMRVAMGLALREDDPNARAIEFYELLSSFDYMASTPTLFNSGTRHSQLSSCYLTTV 387 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL GI+GA+++NA+L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV NDTAV Sbjct: 388 GDDLEGIYGAIRDNALLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVVNDTAV 447 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ ++ Sbjct: 448 AVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRED 507 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSP +V DLHDLYG F Y++YE A++G+IK+F+KI A LWRKMLT+LFET Sbjct: 508 REWTLFSPSDVPDLHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFET 567 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH + + Sbjct: 568 GHPWITFKDPCNLRSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIKDGEL 627 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +L T+ TAVR+LDNVIDIN + + +A+ SN HR +GLGLMGFQ AL+ L +PY+S Sbjct: 628 DVTRLERTVNTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSS 687 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--D 734 PEAVE AD +ME +S+ A+ AS LA ERGAY +++GSLW QG+ P+DS+GLL + R Sbjct: 688 PEAVEFADVAMEQLSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDG 747 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 +L++N SRL W +++ + GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN Sbjct: 748 DLSLNTNSRLDWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSN 807 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTVVN LV +LK LWD M++DLKY DGS+ I+RIP +LK +ATAFEIDP Sbjct: 808 LSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPR 867 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW GLKTTYYLRS AT EK+ Sbjct: 868 WLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGATGAEKT 927 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 + S P C+ D +CE CQ Sbjct: 928 -------------------APVSAPQPQVCSIDNPDCEACQ 949 >gi|302525966|ref|ZP_07278308.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. AA4] gi|302434861|gb|EFL06677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. AA4] Length = 967 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 566/911 (62%), Positives = 693/911 (76%), Gaps = 9/911 (0%) Query: 16 PSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNL 75 PS A P V+VI+R+G V+ FD KIS A+ KAF+AVEG A+ S RV ++ L Sbjct: 31 PSAAEGAPSA---VRVIRRDGSVSPFDAGKISVALTKAFLAVEGGDAAASSRVHHVVAEL 87 Query: 76 TEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS 135 TEQ LL+H +HIE IQDQVE +LM+ GHHK+ R YVLYR+ER A + Sbjct: 88 TEQVEAALLRHTGPETALHIEQIQDQVELALMRGGHHKVARAYVLYRDER----AKAREA 143 Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + A L + DGTL + R+ +V EA +GL+DVS++ VL+E +N+YDG++ Sbjct: 144 AAPAHAEVALSVKGADGTLRPLDWARVSHVVGEAVAGLEDVSAEPVLAEAKRNLYDGITA 203 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +L A I ++R L+E+EPNY+ V+AR LL+KLR E L+ + P++A+ EM Y Y Sbjct: 204 DELALAQIMAARVLVEQEPNYSFVSARLLLDKLRGEALSYLAGAPRQASQDEMTSEYAPY 263 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 F Y+ V+ L+ + FDL + ++ ERD F +LGLQ LYDRYF H NG R E Sbjct: 264 FRAYLRRAVELELVDAELTTFDLDKITAAIRPERDLDFGFLGLQTLYDRYFQHHNGVRFE 323 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQAFFMRVAMGLA++E +E RA+EFY LLS+FHFM STPTLFNSGT QLSSCFLTT Sbjct: 324 LPQAFFMRVAMGLAIREDNREARAIEFYELLSTFHFMASTPTLFNSGTNRAQLSSCFLTT 383 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V DDL IF A + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG+SQGV+PFLK+ANDTA Sbjct: 384 VDDDLDSIFQAYKNNALLAKYSGGLGNDWTPVRGLGAHIKGTNGQSQGVVPFLKIANDTA 443 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+PD F++RV Sbjct: 444 VAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEA 503 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 NA WTLFSP+E DLHDLYG F Y YE A RGEIKVFRK+ AV LWR+MLTMLFE Sbjct: 504 NAEWTLFSPNETPDLHDLYGNAFAQRYREYEAAAARGEIKVFRKVRAVELWRRMLTMLFE 563 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVCNLGS+NLL H Sbjct: 564 TGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTPEG 623 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D ++L T+RTAVR+LDNVIDIN +TI +A++SN HR +GLG+MGFQ AL L +P+A Sbjct: 624 LDTERLEKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFELGVPFA 683 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-- 733 S EAV+ AD SME +S++AISAS +LA+ERG Y +F+GSLW +G+ PIDS+ LL + R Sbjct: 684 SEEAVKFADVSMEHLSYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQG 743 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D L ++ ++ L W L++RVKT+GMRNSN MAIAPTATI+NI GV QSI+P +QNLYVKS Sbjct: 744 DGLDVDTSTTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLYVKS 803 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NMSGDFTVVN LV LK R LWDE M+SDLKY DGS+G I+R+PDDLK ++ATAFEI+ Sbjct: 804 NMSGDFTVVNPHLVKSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 863 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 W++++ S RQKWIDQAQSLNLY+ PSG+KLD +YR AW GLKTTYYLR++SAT VEK Sbjct: 864 KWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKTTYYLRAQSATHVEK 923 Query: 914 STLKGVDGKLN 924 STL+G DGKLN Sbjct: 924 STLRGTDGKLN 934 >gi|226227155|ref|YP_002761261.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas aurantiaca T-27] gi|226090346|dbj|BAH38791.1| ribonucleoside-diphosphate reductase alpha subunit [Gemmatimonas aurantiaca T-27] Length = 957 Score = 945 bits (2442), Expect = 0.0, Method: Composition-based stats. Identities = 565/929 (60%), Positives = 715/929 (76%), Gaps = 4/929 (0%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QVI+RN ++ FDPSKI+ A+ KAF+AVEG A+ S RV+DI++ V L +H + Sbjct: 29 QVIRRNRTLSPFDPSKIAVAMTKAFVAVEGSSAATSARVRDIVERRCVSVVEALTRHADA 88 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA-PKLKIM 148 +HIE+IQDQVE +LM+ GHHK+ R YVLYREER+ +R ++ +A ++ Sbjct: 89 QRALHIEEIQDQVELALMRGGHHKVARAYVLYREERARLRRESGAEETTPGVATSTVRFR 148 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G L + + L +++++AC GL VS+ VL ET +N+YDG++ +L A I ++RT Sbjct: 149 TATGELRTIDQGHLGLVIDDACDGLDGVSAVSVLDETLRNIYDGITADELSLAPILAART 208 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E EPNYA V+AR LLE+LR EVL+ ++ + +A +M Y +YF ++ G+ L Sbjct: 209 LVETEPNYAYVSARLLLERLRAEVLSGIHGQEVEARPADMTRHYVDYFPLFVARGIDTGL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + FDL LA+ L+ ERD AF YLGLQ LYDRY LH +G R+E+PQ FFMRVAMGL Sbjct: 269 LDPELARFDLHRLASALRPERDLAFRYLGLQTLYDRYLLHNDGVRLELPQTFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 AL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT QLSSCFLTTVPDDL GIF +++ Sbjct: 329 ALREVDREARAIEFYELLSSFDFMCSTPTLFNSGTPRAQLSSCFLTTVPDDLDGIFKSVK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+LAKYSGGLGNDW+ VRGLG++I GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAV Sbjct: 389 DNALLAKYSGGLGNDWSRVRGLGSYIRGTNGRSQGVVPFLKVANDTAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWHID+E+FLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV ++ WTLFSPDEV Sbjct: 449 CAYLETWHIDIEDFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVEEDGDWTLFSPDEVP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDLYG+ F Y +E +A+RGE+ V +++ AV LWR+MLTMLFETGHPWITFKDPCN Sbjct: 509 DLHDLYGRAFAERYVQHEIRAERGEVTVHKRVKAVDLWRRMLTMLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GV+HSSNLCTEITLN+S E AVCNLGS+NL H + D +LA+T+RTA Sbjct: 569 LRSPQQHTGVIHSSNLCTEITLNTSDSEVAVCNLGSVNLANHISGGGIDRARLANTVRTA 628 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN +TI +A++SN HR +GLG+MGFQ ALH+L +PYAS A+ ADESME Sbjct: 629 VRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALHMLRVPYASEAAIRFADESME 688 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWD 747 F+S+ AI+AS +LA ERG+Y SF GSLW +G+ PIDS+ LL R L +R+SRL W Sbjct: 689 FLSYEAIAASSDLAVERGSYGSFNGSLWQRGILPIDSLALLDASREGRLECDRSSRLDWS 748 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L++RV+T G+RNSN +AIAPTATI+NICGVSQSI+PSY+NL+VKSNMSG+FT VN +LV Sbjct: 749 SLRERVQTQGIRNSNLLAIAPTATISNICGVSQSIEPSYRNLFVKSNMSGEFTEVNEYLV 808 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +LK R LWDE M+ DLKY DGS+G I+R+P+DLK+++ TAFE+D WLIE+A+RRQKWI Sbjct: 809 QDLKSRGLWDEVMVGDLKYFDGSLGPIDRVPEDLKQLYMTAFEVDCAWLIEAAARRQKWI 868 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQAQSLNLY+ P+G++LD +YR AW GLKTTYYLRS++AT VEKSTL DGKLNAV Sbjct: 869 DQAQSLNLYVARPNGRQLDTLYRLAWRRGLKTTYYLRSQAATHVEKSTLTRTDGKLNAVA 928 Query: 928 VTDPNSSTHSLGI--PSSCTSDTECEVCQ 954 V + + + P+ + +CE CQ Sbjct: 929 VAAAQTVSAIEAVTAPACSIDNPDCEACQ 957 >gi|311696540|gb|ADP99413.1| ribonucleotide-diphosphate reductase subunit alpha [marine bacterium HP15] Length = 921 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 534/947 (56%), Positives = 688/947 (72%), Gaps = 33/947 (3%) Query: 14 AFPSLAYPFPEK---IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQD 70 + +LA P P + +QVIKRNG + FDPSKIS A+ KAF+AVEG A+ S R+ D Sbjct: 2 SASALAEPRPTSHTDTESLQVIKRNGTLVGFDPSKISIAVTKAFLAVEGDTAAGSARIND 61 Query: 71 IIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA 130 + +T+Q + + + K+ VHIEDIQDQVE +LM++ K+ R YVLYREE + RA Sbjct: 62 AVHRVTDQVIQAIGRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERA 121 Query: 131 AQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY 190 + P L + G + + +++ VE+A +GL+ + ++ + N+Y Sbjct: 122 RHAPV----EAHPHLTVKKTSGEIAPLDLGLMKLQVEQAATGLEGIDGDSLVDDALTNLY 177 Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 DG++E D+ +ALI ++R+ IE+EP+Y+ VTAR LLE+ + + Sbjct: 178 DGIAEEDVLSALIMTARSRIEREPDYSAVTARLLLEQ----LRLENAAALGLPISLPLAE 233 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 +YP+ ++E G++ LL E++ FDL L L+ ERD F +LGLQ LYDRYFLH N Sbjct: 234 IYPQALSAFVEAGIRYELLDEALAAFDLERLGAALQPERDLQFGFLGLQTLYDRYFLHWN 293 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 +R+E+PQ FFMRVAMGLAL+E + RA+EFYNLLSSF +M STPTLFNSGTRH QLSS Sbjct: 294 KARLELPQVFFMRVAMGLALREDDPNARAIEFYNLLSSFDYMASTPTLFNSGTRHSQLSS 353 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C+LTTV DDL I+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKV Sbjct: 354 CYLTTVGDDLEDIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKV 413 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTAVAVNQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL + Sbjct: 414 VNDTAVAVNQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLI 473 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +R+ ++ WTLFSP + DLHDLYG F YE+YE A++G+IK+F+KI A LWRKML Sbjct: 474 ERMREDRDWTLFSPSDAPDLHDLYGNAFRERYEHYEALAEQGKIKLFKKIPAKQLWRKML 533 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 T+LFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH Sbjct: 534 TVLFETGHPWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSVNLTAH 593 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 AN + D +L T+ TAVR+LDNVIDIN + + +A+ SN HR +GLG+MGFQ AL+ L Sbjct: 594 IANGELDVQRLEQTVNTAVRMLDNVIDINYYAVPQARNSNLKHRPVGLGIMGFQDALYQL 653 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY+SPEAVE AD +ME +S+ AI AS LA ERGAY S++GSLW QG+ PIDSI LL Sbjct: 654 GLPYSSPEAVEFADVAMEQLSYFAIRASATLAGERGAYESYEGSLWQQGILPIDSINLLK 713 Query: 731 EVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 E R +L++N +RL W +++ + T GMRNSN MAIAPTATI+NI GVSQSI+P+YQN Sbjct: 714 ENRREGDLSVNTNARLDWSPVRELIATNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQN 773 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L+VKSN+SG+FTVVN LV +LK LWD M++DLKY DGS+ I+RIP++LK +ATA Sbjct: 774 LFVKSNLSGEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATA 833 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FEID WL+E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW GLKTTYYLRS A Sbjct: 834 FEIDARWLVEAAARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKTTYYLRSLGA 893 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 T EK+ + + P C+ D +CE CQ Sbjct: 894 TGAEKT-------------------APVAAPQPQVCSIDDPDCEACQ 921 >gi|253998798|ref|YP_003050861.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus sp. SIP3-4] gi|253985477|gb|ACT50334.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus sp. SIP3-4] Length = 937 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 560/940 (59%), Positives = 697/940 (74%), Gaps = 24/940 (2%) Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 + +QVI+R+G F KIS A+ KAF+AV G+ ++ S ++ ++ LT+ V L Sbjct: 13 AALPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISSHMRTEVQALTDTVVAAL 72 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143 ++ + +HIEDIQDQVE +LM+SG H + R YVLYRE+ + + AP Sbjct: 73 VRRKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREK------RAAERAAQQAPAP 126 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202 L ++ DG + + + L +V EAC L D V +++ + +++YDG+ ++ AL Sbjct: 127 TLHVLQ-DGKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAIRDLYDGMPFDEVRRAL 185 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I S+R+LIE+EP Y VTAR L+ +R EVL + +H M Y EYF +YI+ Sbjct: 186 ILSARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKT 239 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G+ A LL E + FDL LA+ L +RD F YLGLQ LYDRYFLHI RIE+PQ FFM Sbjct: 240 GIAAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFM 299 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL G Sbjct: 300 RVAMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDG 359 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGG Sbjct: 360 IYQAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGG 419 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV NA WTLF Sbjct: 420 KRKGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLF 479 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWIT Sbjct: 480 SPSDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWIT 539 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDY 618 FKDPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D Sbjct: 540 FKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQ 599 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KLA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS Sbjct: 600 AKLAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASSA 659 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737 AVE AD +ME + ++A AS LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R + Sbjct: 660 AVEFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVE 719 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++R+S L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG Sbjct: 720 VDRSSTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSG 779 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FTVVN LV +LK R LWDE MI+D+KY+DGS+ IER+P DLK+++ATAFE+DP+WL+ Sbjct: 780 EFTVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLV 839 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E+A+RRQKWIDQAQSLNLY PSGKKL+ +Y AWL GLKTTYYLRS ATS EKST Sbjct: 840 EAAARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKST-- 897 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS---SCTSDTECEVCQ 954 G G+LNAV P S+ P D CE CQ Sbjct: 898 GQGGELNAVSSGLPVSAASPSAEPEPKQCLIDDPGCEACQ 937 >gi|313200885|ref|YP_004039543.1| ribonucleoside-diphosphate reductase subunit alpha [Methylovorus sp. MP688] gi|312440201|gb|ADQ84307.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylovorus sp. MP688] Length = 937 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 558/940 (59%), Positives = 697/940 (74%), Gaps = 24/940 (2%) Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 + +QVI+R+G F KIS A+ KAF+AV G+ ++ S ++ ++ LT+ V L Sbjct: 13 AALPSLQVIRRDGAAVPFAADKISIALTKAFLAVAGEHSTISTHMRTEVQALTDTVVAAL 72 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143 ++ + +HIEDIQDQVE +LM+SG H + R YVLYRE+ + + AP Sbjct: 73 VRRKPAGGSIHIEDIQDQVELALMRSGEHDVARAYVLYREK------RAAERAAQQAPAP 126 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETAL 202 L ++ DG + + + L +V EAC L D V +++ + +++YDG+ ++ AL Sbjct: 127 TLHVLQ-DGKRVPLDQQLLLSMVTEACVNLGDAVQPAVIVEQAMRDLYDGMPFDEVRRAL 185 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I S+R+LIE+EP Y VTAR L+ +R EVL + +H M Y EYF +YI+ Sbjct: 186 ILSARSLIEREPAYNYVTARLQLDLVRAEVLG------EAVSHTAMAQRYAEYFPQYIKA 239 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G+ A LL E + FDL LA+ L +RD F YLGLQ LYDRYFLHI RIE+PQ FFM Sbjct: 240 GIAAELLDERLAQFDLSRLASVLVADRDLQFGYLGLQTLYDRYFLHIEERRIELPQVFFM 299 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLA+ E ++E RA+EFY++LSSF FM STPTLFNSGTRH QLSSC+LTTV DDL G Sbjct: 300 RVAMGLAINEIDRESRAIEFYHVLSSFDFMSSTPTLFNSGTRHSQLSSCYLTTVSDDLDG 359 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ A++ENA+L K++GGLGNDWTPVR LG+ I GTNGKSQGVIPFLKV NDTAVAVNQGG Sbjct: 360 IYQAIKENALLQKFAGGLGNDWTPVRALGSRIKGTNGKSQGVIPFLKVVNDTAVAVNQGG 419 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE+WH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFM+RV NA WTLF Sbjct: 420 KRKGAVCGYLESWHLDLEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMQRVQANADWTLF 479 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP +V DLHDLYGK FE AY NYER+AD GEIK+F+++ AV LWRKML+MLFETGHPWIT Sbjct: 480 SPSDVPDLHDLYGKAFETAYTNYERRADHGEIKLFKRVPAVQLWRKMLSMLFETGHPWIT 539 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDY 618 FKDPCNIRSPQQHVGVVHSSNLCTEITLN+S E AVCNLGS+NL+AH D Sbjct: 540 FKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETEIAVCNLGSVNLMAHLKREGDSYVLDQ 599 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KLA+TIR A+R+LDNV+DIN + + KA+ SN+ HR +GLG+MGFQ ALH + +PYAS Sbjct: 600 TKLAATIRVAMRMLDNVVDINFYAVGKARNSNYRHRPVGLGIMGFQDALHAMRVPYASAA 659 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737 AVE AD +ME + ++A AS LA+ERGAYSSF+GSLWDQG+ P+D++ LL+E R + Sbjct: 660 AVEFADRAMEAVCYNAYLASSYLAEERGAYSSFRGSLWDQGILPLDTLNLLSEARGGQVE 719 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 ++R+ L WD L++R++ +GMRNSNC+AIAPTATI+NI GVS SI+P YQNLYVKSN+SG Sbjct: 720 VDRSRTLDWDSLRQRIQRVGMRNSNCVAIAPTATISNIVGVSASIEPEYQNLYVKSNLSG 779 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FTVVN LV +LK R LWDE MI+D+KY+DGS+ IER+P DLK+++ATAFE+DP+WL+ Sbjct: 780 EFTVVNEQLVQDLKARGLWDEVMIADIKYYDGSLAAIERVPADLKQLYATAFEVDPVWLV 839 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E+A+RRQKWIDQAQSLNLY PSGKKL+ +Y AWL GLKTTYYLRS ATS EKST Sbjct: 840 EAAARRQKWIDQAQSLNLYFAAPSGKKLNDVYLLAWLRGLKTTYYLRSLGATSAEKST-- 897 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS---SCTSDTECEVCQ 954 G G+LNAV P + + P D +CE CQ Sbjct: 898 GQGGELNAVSSALPAVAAATNAEPEPKQCLIDDPDCEACQ 937 >gi|114321251|ref|YP_742934.1| ribonucleoside-diphosphate reductase, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227645|gb|ABI57444.1| ribonucleoside-diphosphate reductase, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 928 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 540/927 (58%), Positives = 688/927 (74%), Gaps = 18/927 (1%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QVI+RNG +T+FDP KI A+ KAF+AVEG+ ++ + R+Q + LT Q V L + + Sbjct: 18 QVIRRNGALTAFDPDKIQLAMKKAFLAVEGERSADAARIQQVTAELTAQVVQALTRR-PT 76 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 A +HIEDIQDQVE +LM++G HK+ R YVLYREE + R ++ + P+L + Sbjct: 77 ATPIHIEDIQDQVELALMRAGEHKVARAYVLYREEHARKRRQEATDEP-----PRLHMTR 131 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG + + L ++ AC L D + V E ++N+YDG++E ++ ALI S+R+L Sbjct: 132 TDGEQVPLDESLLRRVLHHACHELADTDPERVAREAWRNLYDGVTEQEVHKALILSARSL 191 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IE+EP Y V AR L +L E L + A + Y +YF RYI GV+ LL Sbjct: 192 IEQEPAYGHVAARLLQHQLNGEALRFLDFPYDGAPGADPG--YTDYFARYIRRGVELELL 249 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 E ++ FDL LA L ERD F YLGLQ LYDRY H +G+R E+PQAFFMRVAMGL Sbjct: 250 DEQLLTFDLERLAEALMPERDLQFNYLGLQTLYDRYLQHWDGTRFELPQAFFMRVAMGLT 309 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L+E E+E+RA+EFY LLSSF FM STPTLFNSGTR PQLSSC+LT+VPDDL GI+GA+++ Sbjct: 310 LQEVEREERAIEFYRLLSSFDFMSSTPTLFNSGTRRPQLSSCYLTSVPDDLGGIYGAIRD 369 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NA+L+K++GGLGNDWT VR +GAHI GTNG+SQGV+PFLKVA+DTAVAVNQGGKRKGAVC Sbjct: 370 NALLSKFAGGLGNDWTRVRAMGAHIKGTNGRSQGVVPFLKVASDTAVAVNQGGKRKGAVC 429 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTA+W+PDLFM+R +A WTLFSPD+ + Sbjct: 430 AYLETWHLDVEEFLELRKNTGDDRRRTHDMNTAHWVPDLFMQRAEADADWTLFSPDDAAH 489 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LH+LYG+ F+ AYE+ E +A RGEI+ ++ +SA LWR+ML MLFETGHPWITFKDPCN+ Sbjct: 490 LHELYGQAFKAAYEDLEARAARGEIRNYKVVSAKQLWRRMLGMLFETGHPWITFKDPCNL 549 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 RSPQQH GVVHSSNLCTEITLN+S EE AVCNLGS+NL AH + D+++L +T+RTA+ Sbjct: 550 RSPQQHAGVVHSSNLCTEITLNTSDEEIAVCNLGSVNLAAHTTPDGLDHERLRNTVRTAM 609 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVIDIN +++ +A+++N HR +GLG+MGFQ AL+ +PYAS EAV AD S E Sbjct: 610 RMLDNVIDINYYSVPQARRANLRHRPVGLGVMGFQDALYAQDLPYASDEAVAFADRSQEA 669 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDE 748 IS++AI AS +LA+ERGAY SF+GSLW +G P+DSI + E R + M+ +S L W Sbjct: 670 ISYYAIEASADLARERGAYPSFEGSLWQRGELPLDSIQRVVEARDGDCTMDTSSSLDWAA 729 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+++V+T GMRNSNC+AIAPTATIANI GVSQ I+P+++NLYVKSN+SG+FTVVN LV Sbjct: 730 LREKVRT-GMRNSNCLAIAPTATIANIVGVSQGIEPAFKNLYVKSNLSGEFTVVNPALVR 788 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 LK LWD M++DLKY+DGS+ I R+P++LK+ ATAFE+D WL+++ SRRQKW+D Sbjct: 789 ALKAYGLWDAVMVNDLKYYDGSVQPIGRVPEELKQRFATAFELDSEWLVQAGSRRQKWLD 848 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG-KLNAVP 927 Q+QSLNLY+ EPSG KLD +YRQAW +GLKTTYYLRS AT VEKST+ +LNAV Sbjct: 849 QSQSLNLYMAEPSGPKLDALYRQAWRLGLKTTYYLRSTGATQVEKSTMDPARANRLNAVS 908 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G S D ECE CQ Sbjct: 909 AA-------PGGGQSCSVDDPECEACQ 928 >gi|149375673|ref|ZP_01893442.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola DG893] gi|149360075|gb|EDM48530.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola DG893] Length = 921 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 525/939 (55%), Positives = 671/939 (71%), Gaps = 30/939 (3%) Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78 +QVIKRNG + FD SKIS A+ KAF+AVEG A+ S R+ D ++ +T Q Sbjct: 10 GQSASTSTASLQVIKRNGALVGFDASKISVAVTKAFLAVEGDEAAGSARIHDSVERVTHQ 69 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 + + + K+ VHIEDIQDQVE +LM++ K+ R YVLYRE + RA S + Sbjct: 70 VMQAISRRLKAGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREAHAQERA----SLAP 125 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 P L + +G + +++ VE A L+ + + ++ +N+YDG++E ++ Sbjct: 126 VEAHPTLTVKKANGEAAPLDLGLMKVQVERASQELEGIDGESLVEGALRNLYDGIAEEEV 185 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 +ALI ++R IE+EP+Y+ VTAR LLE+LR E T + + +YP+ Sbjct: 186 LSALIMTARGRIEQEPDYSAVTARLLLEQLRLETATALKLPLSLP----LAEIYPQALST 241 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 +IE+G+ LL E+M FDL L LK ERD+ F +LGLQ LYDRYFL+ G R+E+PQ Sbjct: 242 FIEQGIHYELLDEAMAAFDLERLGAALKPERDYQFGFLGLQTLYDRYFLNWKGDRLELPQ 301 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FFMRV+MGLAL+E + RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV D Sbjct: 302 VFFMRVSMGLALQEDDPNARAIEFYDLLSSFDYMASTPTLFNSGTRHSQLSSCYLTTVQD 361 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL GI+GA+++NAML+K++GGLGNDWTPVR LG+HI GTNG SQGV+PFLKV NDTAVAV Sbjct: 362 DLEGIYGAIRDNAMLSKWAGGLGNDWTPVRALGSHIKGTNGSSQGVVPFLKVVNDTAVAV 421 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVCAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ + Sbjct: 422 NQGGKRKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRSDQD 481 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLFSP++ DLHDLYG F Y+ YE A RGEI +F+ +SA LWRKMLT+LFETGH Sbjct: 482 WTLFSPNDTPDLHDLYGNAFRERYQEYEAMAARGEITLFKTVSAKQLWRKMLTVLFETGH 541 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL AH N + D Sbjct: 542 PWITFKDPCNLRSPQQHRGVVHSSNLCTEITLNTSADEIAVCNLGSINLAAHVHNGELDV 601 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +L T+ TAVR+LDNV+DIN + + +A+ SN HR +GLGLMGFQ AL+ L++PY S E Sbjct: 602 QRLERTVNTAVRMLDNVVDINYYAVPQARNSNFKHRPVGLGLMGFQDALYRLNLPYTSAE 661 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DEL 736 AVE AD +ME IS+ AI AS LA ERGAY +++GSLW +G+ PIDSI LL R +L Sbjct: 662 AVEFADVAMEQISYFAIRASAVLAGERGAYETYEGSLWHEGILPIDSINLLKANRREGDL 721 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++N + L W +++ + GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+S Sbjct: 722 SLNTDTLLDWTPVRELIARNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLS 781 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FTVVN LV +LK LWD M++DLKY DGS+ I+RIP LK +ATAFEID WL Sbjct: 782 GEFTVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAALKARYATAFEIDARWL 841 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 +E+A+RRQKW+DQAQSLNLY+ EPSGKKLD +Y+ +W GLKTTYYLRS AT EK+ Sbjct: 842 VEAAARRQKWLDQAQSLNLYMAEPSGKKLDELYQLSWERGLKTTYYLRSLGATGAEKT-- 899 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 + + P C+ D +CE CQ Sbjct: 900 -----------------APVAAPQPQVCSIDEPDCEACQ 921 >gi|160872690|ref|ZP_02062822.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Rickettsiella grylli] gi|159121489|gb|EDP46827.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Rickettsiella grylli] Length = 946 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 538/928 (57%), Positives = 674/928 (72%), Gaps = 20/928 (2%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKRNG + +DPSKI AI KAF+AVEG A+ S R+ + + LT+Q T L Q + Sbjct: 37 LQVIKRNGKLVDYDPSKIRVAITKAFLAVEGGQAALSTRIHERVSQLTQQITTILQQRHP 96 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + IE IQDQVE +LM+ H++ R YVLYREER +RA +L+I Sbjct: 97 QGGTLSIETIQDQVELALMRVEAHQVARAYVLYREERRKMRAETKP-----HSEIQLQIT 151 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + DG+ + +L +++ E C+ L+DV + +L ET +N+YDG+ +D++ ALI S+R+ Sbjct: 152 LTDGSQRPLDLIQLSLLITETCNDLKDVKHERILQETLRNLYDGMPAADIDKALIISARS 211 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L+E +P Y TARFLL L E L + H +Y YF YI+ G++ L Sbjct: 212 LVEHDPQYTYATARFLLRTLYAEALHFLELP---LHTHRHSGIYSHYFQHYIKRGIQLEL 268 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L + FDL L+ L ERD F YLGLQ LYDRYFLH + R E+PQAFFMRVAMGL Sbjct: 269 LDPQLHTFDLEQLSQALLPERDQQFTYLGLQTLYDRYFLHADHIRFELPQAFFMRVAMGL 328 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 A E+ K RA+EFY+LLSSF +M STPTLFNSGT PQLSSCFLTTV DDL I+ A++ Sbjct: 329 AQHESNKNDRAIEFYHLLSSFDYMASTPTLFNSGTLRPQLSSCFLTTVTDDLDHIYSAIK 388 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NA+L+K++GGLGNDWTPVR +GA I GTNGKS GV+PFL VAN +AVAVNQGGKRKGAV Sbjct: 389 DNALLSKFAGGLGNDWTPVRAMGARIKGTNGKSLGVVPFLNVANASAVAVNQGGKRKGAV 448 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR+ + WTLFSPDE Sbjct: 449 CAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFSPDETP 508 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHD +G FE Y+ YE +A RGEIK F+ I A LWRKML++LFETGHPWITFKDPCN Sbjct: 509 DLHDAFGSAFEEKYQAYEAKALRGEIKNFKTIPAATLWRKMLSLLFETGHPWITFKDPCN 568 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRT 627 +RSPQQHVG +HSSNLCTEITLN+S +E AVCNLGSINL H + + + KL TIRT Sbjct: 569 LRSPQQHVGTIHSSNLCTEITLNTSIDEIAVCNLGSINLPQHLTESGEIEKTKLRQTIRT 628 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A+R+LDNVIDIN +T+ +A++SN HR IGLGLMGFQ AL+ L +PYAS A+ AD++M Sbjct: 629 AIRMLDNVIDINYYTVPQARRSNLKHRPIGLGLMGFQDALYQLRLPYASDAAITFADQTM 688 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPW 746 E IS++AI AS +LA ERGAY SF GSLW QGV P+DSI L + R E +RT+RL W Sbjct: 689 ELISYYAIEASSDLAHERGAYESFPGSLWSQGVLPLDSIARLQKARGEFLDQDRTARLDW 748 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L+K+V GMR+SNCMAIAPTATI+NICGVSQSI+P+YQNL+VKSNMSG+FT++N +L Sbjct: 749 DTLRKKVM-HGMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFTMINPYL 807 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 +N+LK LWD M++DLKY+DGS+ IERIPD LK+++ATAFEI WL+E+ SRRQKW Sbjct: 808 INDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAGSRRQKW 867 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQ+QSLNLY+ SGKKLD +Y+Q WL GLKT+YYLR+ AT EK+TL Sbjct: 868 IDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTSYYLRTMGATHTEKATL---------A 918 Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + +++ P+ D +CE CQ Sbjct: 919 KSHLNSVHMNTVATPACSIVDPDCESCQ 946 >gi|212212092|ref|YP_002303028.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii CbuG_Q212] gi|212010502|gb|ACJ17883.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii CbuG_Q212] Length = 941 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 553/929 (59%), Positives = 687/929 (73%), Gaps = 18/929 (1%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 ++V+KR+G V +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+ LT+Q + Sbjct: 29 QLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRW 88 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S +VHIE IQD+VE +LM +G HK R YVLY + R Q + + + I Sbjct: 89 PSGGVVHIETIQDKVELALMYAGLHKAARAYVLY----REERRKQREEQKASEAENTIHI 144 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +DDG I + L +V ACS L+ V + +L ET N++DG++ D+ L+ ++R Sbjct: 145 TLDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTAR 204 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TL+E EPNY VTAR LL L REVL + PQ H ++ YPE F +I G++ Sbjct: 205 TLVENEPNYTYVTARLLLHDLYREVLNGLN-LPQDLMHEDIAHYYPEAFKNFIRHGIETE 263 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LH ++ FDL YLA LK ERD F YL LQ LYDRY +H RIE+PQ FFMRVAMG Sbjct: 264 HLHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMG 323 Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA E + +RAVEFYN+LSSF FM STPTLFNSGT PQLSSCFLTTVPD L GI+GA Sbjct: 324 LAQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGA 383 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKG Sbjct: 384 LKDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKG 443 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSPDE Sbjct: 444 AVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDE 503 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V DLHD +G+ FEIAY YE +A RGEI+ + ISA++LWRK+L+MLFETGHPW+TFKD Sbjct: 504 VPDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDA 562 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CNIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H + + D +KLA T + Sbjct: 563 CNIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTK 622 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN +++ +A+ SN HR IGLGLMGFQ AL+L +IPYAS AV+ AD+S Sbjct: 623 TAIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQS 682 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLP 745 ME IS++AI AS+ELA+ERG Y +F SLW QG+ PIDSI LL + R N L Sbjct: 683 METISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLD 742 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L+K+V GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N + Sbjct: 743 WNALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPY 802 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV ELK R LWD M+ DLKY++GS+ I+RIP +LKK++ATAFE++P WL+E+ASRRQK Sbjct: 803 LVRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQK 862 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS AT EK+T+ D LNA Sbjct: 863 WIDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA 920 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + + + D +CE CQ Sbjct: 921 VTGQNNPN--------ACAIDDPDCEACQ 941 Score = 37.9 bits (86), Expect = 9.4, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 83/211 (39%), Gaps = 17/211 (8%) Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSE 195 +A +L+++ DG ++ +++ R+ + +++A ++ ++ + E + D ++ Sbjct: 23 EAIQPGQLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQIT- 81 Query: 196 SDLETAL--------IFSSRTLIEKEPNYAKV--TARFLLEKLRREVLTTVYKKPQKATH 245 DL I + + +E YA + AR + +K +A + Sbjct: 82 -DLFHKRWPSGGVVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAEN 140 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 L + +++ AR++H + D + V L+ ++ F+ + L+ +Y Sbjct: 141 TIHITL-DDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGL 199 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + P + V L L + +E Sbjct: 200 VMTARTLVENEPNYTY--VTARLLLHDLYRE 228 >gi|29654844|ref|NP_820536.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii RSA 493] gi|161831609|ref|YP_001597388.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii RSA 331] gi|29542112|gb|AAO91050.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii RSA 493] gi|161763476|gb|ABX79118.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii RSA 331] Length = 941 Score = 931 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 553/929 (59%), Positives = 686/929 (73%), Gaps = 18/929 (1%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 ++V+KR+G V +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+ LT+Q + Sbjct: 29 QLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRW 88 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S VHIE IQD+VE +LM +G HK R YVLY + R Q + + + I Sbjct: 89 PSGGAVHIETIQDKVELALMYAGLHKAARAYVLY----REERRKQREEQKASEAENTIHI 144 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +DDG I + L +V ACS L+ V + +L ET N++DG++ D+ L+ ++R Sbjct: 145 TLDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTAR 204 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TL+E EPNY VTAR LL L REVL + PQ H ++ YPE F +I G++ Sbjct: 205 TLVENEPNYTYVTARLLLHDLYREVLNGLN-LPQDLMHEDIAHYYPEAFKNFIRHGIETE 263 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LH ++ FDL YLA LK ERD F YL LQ LYDRY +H RIE+PQ FFMRVAMG Sbjct: 264 HLHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMG 323 Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA E + +RAVEFYN+LSSF FM STPTLFNSGT PQLSSCFLTTVPD L GI+GA Sbjct: 324 LAQSEGEARNQRAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGA 383 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKG Sbjct: 384 LKDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKG 443 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSPDE Sbjct: 444 AVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDE 503 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V DLHD +G+ FEIAY YE +A RGEI+ + ISA++LWRK+L+MLFETGHPW+TFKD Sbjct: 504 VPDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDA 562 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CNIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H + + D +KLA T + Sbjct: 563 CNIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTK 622 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN +++ +A+ SN HR IGLGLMGFQ AL+L +IPYAS AV+ AD+S Sbjct: 623 TAIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQS 682 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLP 745 ME IS++AI AS+ELA+ERG Y +F SLW QG+ PIDSI LL + R N L Sbjct: 683 METISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLD 742 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L+K+V GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N + Sbjct: 743 WNALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPY 802 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV ELK R LWD M+ DLKY++GS+ I+RIP +LKK++ATAFE++P WL+E+ASRRQK Sbjct: 803 LVRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQK 862 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS AT EK+T+ D LNA Sbjct: 863 WIDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA 920 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + + + D +CE CQ Sbjct: 921 VTGQNNPN--------ACAIDDPDCEACQ 941 Score = 37.9 bits (86), Expect = 9.4, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 83/211 (39%), Gaps = 17/211 (8%) Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSE 195 +A +L+++ DG ++ +++ R+ + +++A ++ ++ + E + D ++ Sbjct: 23 EAIQPGQLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQIT- 81 Query: 196 SDLETAL--------IFSSRTLIEKEPNYAKV--TARFLLEKLRREVLTTVYKKPQKATH 245 DL I + + +E YA + AR + +K +A + Sbjct: 82 -DLFHKRWPSGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAEN 140 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 L + +++ AR++H + D + V L+ ++ F+ + L+ +Y Sbjct: 141 TIHITL-DDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGL 199 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + P + V L L + +E Sbjct: 200 VMTARTLVENEPNYTY--VTARLLLHDLYRE 228 >gi|153208311|ref|ZP_01946690.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154706203|ref|YP_001423854.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii Dugway 5J108-111] gi|165919213|ref|ZP_02219299.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii RSA 334] gi|212219267|ref|YP_002306054.1| ribonucleotide-diphosphate reductase subunit alpha [Coxiella burnetii CbuK_Q154] gi|120576095|gb|EAX32719.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii 'MSU Goat Q177'] gi|154355489|gb|ABS76951.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii Dugway 5J108-111] gi|165917074|gb|EDR35678.1| ribonucleoside-diphosphate reductase, alpha subunit [Coxiella burnetii RSA 334] gi|212013529|gb|ACJ20909.1| ribonucleoside-diphosphate reductase alpha chain [Coxiella burnetii CbuK_Q154] Length = 941 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 553/929 (59%), Positives = 686/929 (73%), Gaps = 18/929 (1%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 ++V+KR+G V +D ++I+ A+ KAF+AVEG+ A+ S RVQ+I+ LT+Q + Sbjct: 29 QLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQITDLFHKRW 88 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S VHIE IQD+VE +LM +G HK R YVLY + R Q + + + I Sbjct: 89 PSGGAVHIETIQDKVELALMYAGLHKAARAYVLY----REERRKQREEQKASEAENTIHI 144 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +DDG I + L +V ACS L+ V + +L ET N++DG++ D+ L+ ++R Sbjct: 145 TLDDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGLVMTAR 204 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 TL+E EPNY VTAR LL L REVL + PQ H ++ YPE F +I G++ Sbjct: 205 TLVENEPNYTYVTARLLLHDLYREVLNGLN-LPQDLMHEDIAHYYPEAFKNFIRHGIETE 263 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LH ++ FDL YLA LK ERD F YL LQ LYDRY +H RIE+PQ FFMRVAMG Sbjct: 264 HLHPNLQTFDLNYLAQALKPERDQQFTYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMG 323 Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA E + +RAVEFYN+LSSF FM STPTLFNSGT PQLSSCFLTTVPD L GI+GA Sbjct: 324 LAQSEGEARNERAVEFYNVLSSFDFMSSTPTLFNSGTVFPQLSSCFLTTVPDSLDGIYGA 383 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L++NA+L+KY+GGLGNDWTPVR +GA+I GTNGKS GV+PFL VA+ TA+AVNQGGKRKG Sbjct: 384 LKDNALLSKYAGGLGNDWTPVRAMGAYIKGTNGKSLGVVPFLNVADATAIAVNQGGKRKG 443 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSPDE Sbjct: 444 AVCAYLETWHMDIEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDE 503 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V DLHD +G+ FEIAY YE +A RGEI+ + ISA++LWRK+L+MLFETGHPW+TFKD Sbjct: 504 VPDLHDKFGEAFEIAYVAYEEKAHRGEIR-SKTISALSLWRKILSMLFETGHPWVTFKDA 562 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 CNIRSPQQHVGV+HSSNLCTEITLN+S EE AVCNLGSINL+ H + + D +KLA T + Sbjct: 563 CNIRSPQQHVGVIHSSNLCTEITLNTSREEIAVCNLGSINLVNHMKDGKLDTEKLARTTK 622 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TA+R+LDNVIDIN +++ +A+ SN HR IGLGLMGFQ AL+L +IPYAS AV+ AD+S Sbjct: 623 TAIRMLDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQS 682 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLP 745 ME IS++AI AS+ELA+ERG Y +F SLW QG+ PIDSI LL + R N L Sbjct: 683 METISYYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLD 742 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L+K+V GMRNSN MAIAPTATI+NICG+SQSI+P+YQNL+VKSN+SG+FTV+N + Sbjct: 743 WNALRKQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPY 802 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV ELK R LWD M+ DLKY++GS+ I+RIP +LKK++ATAFE++P WL+E+ASRRQK Sbjct: 803 LVRELKSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQK 862 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ EPSGKKLD +YR AWL GLKTTYYLRS AT EK+T+ D LNA Sbjct: 863 WIDQAQSLNLYMAEPSGKKLDVLYRMAWLRGLKTTYYLRSMGATGTEKATIH--DTTLNA 920 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + + + D +CE CQ Sbjct: 921 VTGQNNPN--------ACAIDDPDCEACQ 941 Score = 37.9 bits (86), Expect = 9.4, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 83/211 (39%), Gaps = 17/211 (8%) Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSE 195 +A +L+++ DG ++ +++ R+ + +++A ++ ++ + E + D ++ Sbjct: 23 EAIQPGQLRVVKRDGRVVKYDANRITIAMKKAFLAVEGETAAESGRVQEIVSRLTDQIT- 81 Query: 196 SDLETAL--------IFSSRTLIEKEPNYAKV--TARFLLEKLRREVLTTVYKKPQKATH 245 DL I + + +E YA + AR + +K +A + Sbjct: 82 -DLFHKRWPSGGAVHIETIQDKVELALMYAGLHKAARAYVLYREERRKQREEQKASEAEN 140 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 L + +++ AR++H + D + V L+ ++ F+ + L+ +Y Sbjct: 141 TIHITL-DDGATILLDQSWLARMVHSACSDLEGVDAVKILEETKNNLFDGVALKDVYKGL 199 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + P + V L L + +E Sbjct: 200 VMTARTLVENEPNYTY--VTARLLLHDLYRE 228 >gi|198284353|ref|YP_002220674.1| ribonucleoside-diphosphate reductase subunit alpha [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665782|ref|YP_002427015.1| ribonucleotide-diphosphate reductase, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248874|gb|ACH84467.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517995|gb|ACK78581.1| ribonucleotide-diphosphate reductase, alpha subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 948 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 548/972 (56%), Positives = 689/972 (70%), Gaps = 45/972 (4%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P+ G+ PS A +VI+RN + +FD SKI A+ KAF+AVEG Sbjct: 3 KPTTQAVIGNPAYDPSEASH-------YKVIRRNNAMVNFDASKIHIAVTKAFLAVEGGS 55 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 + S RV+D++ LTEQ + L + HIEDIQDQVE +LM++G H++ R YVLY Sbjct: 56 GAASARVRDLVSRLTEQVIEALKRRQPGGGTFHIEDIQDQVELALMRAGEHEVARAYVLY 115 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKI 180 E Q + P +++ +G+ + + RL +++EACSGL VS Sbjct: 116 -REERARERRQQAAAETPADVPVIRVSYPNGSQRALDMVRLRAVIDEACSGLGTAVSIDA 174 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L T KN+YDG+SE +L A I +SR LIE++P YA +AR LL+++R EVL Sbjct: 175 ILGNTVKNLYDGISEDELFQAPILASRVLIERDPAYAYASARLLLDRVRWEVLG------ 228 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + AT EM YP+YF Y++ G++ L+ + +DL + L+ ERD F+YLG+QI Sbjct: 229 EAATQAEMTARYPQYFRDYLQTGIQNELIDPRLGQYDLERITAALRPERDLDFQYLGMQI 288 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYFLH+ RIE+PQAF+MRVAMGLA+ E ++E A+ FY +LSSF F+ STPTLFN Sbjct: 289 LYDRYFLHVRERRIELPQAFWMRVAMGLAMNEVDRETHAIAFYEVLSSFDFVSSTPTLFN 348 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT PQLSSCFLTTV DDL I+ A++ENAML+K+SGGLGNDWTPVR LG+ I GTNGK Sbjct: 349 AGTLRPQLSSCFLTTVGDDLDDIYEAIKENAMLSKFSGGLGNDWTPVRALGSFIKGTNGK 408 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 SQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMN Sbjct: 409 SQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMN 468 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 TANWIPDLFM+RV NA WTLFSP+E DLHDL G F YE+YER AD G I++F++I Sbjct: 469 TANWIPDLFMERVENNAMWTLFSPNETPDLHDLTGSAFRERYEHYERMADAGGIELFKRI 528 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A+ LWRKMLTMLFETGHPWITFKDPCN+RSPQQHVGVVHSSNLCTEITLN++++E AVC Sbjct: 529 PAIHLWRKMLTMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNAKEIAVC 588 Query: 601 NLGSINLLAHFANN-----------------QFDYDKLASTIRTAVRVLDNVIDINCHTI 643 NLGS+NL++H D +KL TIR A+R+LDNVID+N + + Sbjct: 589 NLGSVNLVSHLRAVADAGALREDSTPEELLAMMDGEKLHHTIRVAMRMLDNVIDMNYYAV 648 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 KA+ SN HR +GLGLMGF AL + IPYAS A+ AD S E IS+HAI AS +LA+ Sbjct: 649 AKARNSNLRHRPVGLGLMGFSDALLQMRIPYASAAALAFADISQEVISYHAIDASADLAR 708 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG+Y SF GSLW QG+ PIDSI LLA R+ + ++R+ L W L+ +V+ GMRNSN Sbjct: 709 ERGSYQSFPGSLWSQGILPIDSIDLLAAGREHGVDVDRSQHLDWATLRSKVRG-GMRNSN 767 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 C+AIAPTATI+NI GVSQ I+P YQNLYVKSN+SG+FTVVNS+LV++LK+ +LWDE M++ Sbjct: 768 CLAIAPTATISNIVGVSQGIEPIYQNLYVKSNLSGEFTVVNSYLVHDLKRLELWDEVMVN 827 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 DLKY DGS+ ++RIP +K ++A AFE DP WL+E+A+RRQKW+DQAQSLNLY +PSG Sbjct: 828 DLKYFDGSVMPVDRIPASIKPLYANAFETDPEWLVEAAARRQKWLDQAQSLNLYFGQPSG 887 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 KK+D IYR AW GLKTTYYLRS AT+ EKST++ G LNAV P + Sbjct: 888 KKIDEIYRLAWKRGLKTTYYLRSLGATAAEKSTVQ--TGTLNAVVSGQPKA--------- 936 Query: 943 SCTSDTECEVCQ 954 D CE CQ Sbjct: 937 CAIDDPTCEACQ 948 >gi|169634185|ref|YP_001707921.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii SDF] gi|169152977|emb|CAP02025.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter baumannii] Length = 943 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 534/961 (55%), Positives = 687/961 (71%), Gaps = 42/961 (4%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ P +I QVIKR G V +FD KIS AI KAF+AVEG+ ++ S R+ D I LT Sbjct: 2 SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G HK+ R YV+YR++R+ R + + Sbjct: 59 EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARKDTNSNH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L++ +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ES Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKES 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L ++L L + A + Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NAL 225 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++GV+ LL ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 226 EAFLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA T++TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 EAV+ ADESME IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 645 DEAVKFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P Sbjct: 765 LSGEFTVINPCLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKGVDGKLNAVPVTDPNSSTH--------------------SLGIPSSCTSD-TECEVC 953 T+ G LNAV ++ + +P +C+ D +CE C Sbjct: 885 TIN--TGALNAVKPATVEAAPAVAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEAC 942 Query: 954 Q 954 Q Sbjct: 943 Q 943 >gi|169797063|ref|YP_001714856.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AYE] gi|184157024|ref|YP_001845363.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii ACICU] gi|213156531|ref|YP_002318192.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter baumannii AB0057] gi|215484524|ref|YP_002326759.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii AB307-0294] gi|239501300|ref|ZP_04660610.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB900] gi|260555645|ref|ZP_05827865.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|301345631|ref|ZP_07226372.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB056] gi|301512782|ref|ZP_07238019.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB058] gi|301596293|ref|ZP_07241301.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB059] gi|332852153|ref|ZP_08433980.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013150] gi|332867552|ref|ZP_08437705.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013113] gi|332872598|ref|ZP_08440566.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6014059] gi|169149990|emb|CAM87884.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter baumannii AYE] gi|183208618|gb|ACC56016.1| Ribonucleotide reductase, alpha subunit [Acinetobacter baumannii ACICU] gi|193076531|gb|ABO11187.2| ribonucleoside diphosphate reductase alpha subunit [Acinetobacter baumannii ATCC 17978] gi|213055691|gb|ACJ40593.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter baumannii AB0057] gi|213986949|gb|ACJ57248.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii AB307-0294] gi|260410556|gb|EEX03854.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii ATCC 19606] gi|322506923|gb|ADX02377.1| nrdA [Acinetobacter baumannii 1656-2] gi|323516790|gb|ADX91171.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii TCDC-AB0715] gi|332729525|gb|EGJ60864.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013150] gi|332733969|gb|EGJ65114.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6013113] gi|332739127|gb|EGJ69986.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter baumannii 6014059] Length = 944 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 535/962 (55%), Positives = 688/962 (71%), Gaps = 43/962 (4%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ P +I QVIKR G V +FD KIS AI KAF+AVEG+ ++ S R+ D I LT Sbjct: 2 SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G HK+ R YV+YR++R+ R + + Sbjct: 59 EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARKDTNSNH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L++ +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ES Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKES 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L ++L L + A + Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NAL 225 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++GV+ LL ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 226 EAFLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA T++TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 EAV ADESME IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 645 DEAVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSD-TECEV 952 T+ G LNAV + + T + +P +C+ D +CE Sbjct: 885 TIN--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEA 942 Query: 953 CQ 954 CQ Sbjct: 943 CQ 944 >gi|260551038|ref|ZP_05825243.1| ribonucleotide reductase [Acinetobacter sp. RUH2624] gi|260405986|gb|EEW99473.1| ribonucleotide reductase [Acinetobacter sp. RUH2624] Length = 944 Score = 923 bits (2385), Expect = 0.0, Method: Composition-based stats. Identities = 536/962 (55%), Positives = 686/962 (71%), Gaps = 43/962 (4%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ P +I QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LT Sbjct: 2 SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + + Sbjct: 59 EMVLNTFKRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQQTNSNH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L++ +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ES Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALKATVNRAAEGLEGIEVEAIIDETVKNLYNGVKES 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L ++L L + A + Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NAL 225 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++GV+ LL ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 226 EAFLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVRGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA T++TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 EAV ADESME IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 645 DEAVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P Sbjct: 765 LSGEFTVINPYLVRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSD-TECEV 952 T+ G LNAV + + T + +P +C+ D +CE Sbjct: 885 TIN--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEA 942 Query: 953 CQ 954 CQ Sbjct: 943 CQ 944 >gi|126664353|ref|ZP_01735337.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17] gi|126630679|gb|EBA01293.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17] Length = 929 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 516/929 (55%), Positives = 665/929 (71%), Gaps = 29/929 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QVIKRNG + +F PSKI A+ KAF+AVEG A+ S R+ D + +T+Q V + + K Sbjct: 27 LQVIKRNGNLVNFTPSKIGVAVTKAFLAVEGDQAAGSARINDAVHRVTDQVVQAISRRLK 86 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + VHIEDIQDQVE +LM++ K+ R YVLYREE + RA P L + Sbjct: 87 AGGKVHIEDIQDQVELALMRAEEQKVARAYVLYREEHARERA----LHEPVEAHPTLTVK 142 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G + + ++ V+ A GL + ++ ++ E+ +N+Y+G+ E+++ +ALI ++R Sbjct: 143 QAGGRTVPLDLGLMKQQVDNAAFGLDGIDAESLVEESIRNLYNGIDEAEVLSALIMTARG 202 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EP+Y+ VTAR LLE+ + + T + +YP+ +I G++ L Sbjct: 203 RIEREPDYSAVTARLLLEQ----LRLESVTALKLDTSLSLADVYPQALSTFINAGIRYEL 258 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 L E+M FD+ L LK ERD F +LGLQ LYDRYFLH R+E+PQ FFMRVAMGL Sbjct: 259 LDEAMAAFDMERLGAALKPERDLQFGFLGLQTLYDRYFLHWKEDRLELPQVFFMRVAMGL 318 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L+E + RA+EFY+LLSSF +M STPTLFNSGTRH QLSSC+LTTV DDL I+G+++ Sbjct: 319 SLREDDPNSRAIEFYDLLSSFDYMSSTPTLFNSGTRHSQLSSCYLTTVDDDLEAIYGSIR 378 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR +GA I GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 379 DNAMLSKWAGGLGNDWTPVRAMGARIKGTNGQSQGVVPFLKVVNDTAVAVNQGGKRKGAV 438 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGD+RRRTHDMNTANW+PDL ++R+ Q+ WTLFSP++ Sbjct: 439 CAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRQDRDWTLFSPNDAP 498 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDLYG F Y++YE A G+I++F+ I A LWRKMLT+LFETGHPWITFKDPCN Sbjct: 499 DLHDLYGNAFRERYQHYEALAAEGKIELFKTIPAKQLWRKMLTVLFETGHPWITFKDPCN 558 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGS+NL AH N + D +L T+ TA Sbjct: 559 LRSPQQHKGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHINNGELDVKRLERTVDTA 618 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVIDIN + + +A+ SN HR +GLGLMGFQ AL+ L + Y SP+AVE AD +ME Sbjct: 619 VRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYALRLSYTSPQAVEFADVAME 678 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPW 746 +S+ AI AS LA ERGAY S++GSLW Q + PIDSI L R +L++N SRL W Sbjct: 679 QLSYFAIRASARLAAERGAYESYEGSLWSQKILPIDSIERLKAARLEGDLSVNTDSRLDW 738 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 ++ + GMRNSN MAIAPTATI+NI GVSQSI+P+YQNL+VKSN+SG+FTVVN L Sbjct: 739 APVRDLIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNPSL 798 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK LWD M++DLKY+DGS+ IERIP +LK +ATAFEID WL+E+ASRRQKW Sbjct: 799 VRDLKAEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDARWLVEAASRRQKW 858 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 +DQ QSLNLY+ +PSGKKLD +Y+ AW GLKTTYYLRS AT Sbjct: 859 LDQGQSLNLYMAQPSGKKLDELYQLAWERGLKTTYYLRSLGATGA--------------- 903 Query: 927 PVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 + ++T + P C+ D +CE CQ Sbjct: 904 ---NEQAATVAAPQPQVCSIDEPDCEACQ 929 >gi|262369329|ref|ZP_06062657.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter johnsonii SH046] gi|262315397|gb|EEY96436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter johnsonii SH046] Length = 943 Score = 920 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 532/959 (55%), Positives = 690/959 (71%), Gaps = 38/959 (3%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S++ P +I QVIKR G V SFD KIS AI KAF+AVEG+ ++ S R+ D I LT Sbjct: 2 SVSNSTPGQI---QVIKRTGDVASFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G K+ R YV+YR++R+D R + Sbjct: 59 EMVLNTFSRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYRDQRADARKQAGENH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L+I +G L + ++LE V +A GL+ ++ + ++ ET KN+Y+G+ S Sbjct: 119 -----HPTLQITDANGQLQPLDMRKLEATVTKAAEGLEGINVQAIIDETIKNLYNGVKAS 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L ++L LT + A ++ Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVATGLTFLGLSEDTAEGDALET------ 227 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++G++ LL +++FDL LA ++ ER F YLGLQ L+DRYF+H +G R E+ Sbjct: 228 --FLKKGIELDLLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGL+L E +E+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLSLNEANREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 DDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 A WTLF+P E DLHDL G EF Y +YE A + + +KI A LWRKML+MLFET Sbjct: 466 AEWTLFTPSETPDLHDLMGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLVQHVQGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA T++TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMQLAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 AV+ ADESME IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E Sbjct: 645 DAAVDFADESMEVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P Sbjct: 765 LSGEFTVINPYLVRALKDRGLWDSVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVEPR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKG------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 T+ V ++ V + + +P +C+ D +CE CQ Sbjct: 885 TINTGALNAVKPATVTAAPVAAVAQEVKPEVVAEDEGFGQAAPVPMACSIDNPDCEACQ 943 >gi|256377254|ref|YP_003100914.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema mirum DSM 43827] gi|255921557|gb|ACU37068.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinosynnema mirum DSM 43827] Length = 950 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 570/958 (59%), Positives = 706/958 (73%), Gaps = 26/958 (2%) Query: 15 FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKN 74 P+ P V+V++R+G V++FD +K+S A+ KAF+AVEG GA S R+ +++ Sbjct: 1 MPTTTTPAAVAKAPVRVVRRDGAVSAFDATKVSVAMTKAFLAVEGDGAVASSRLHPLVEE 60 Query: 75 LTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSH 134 LT Q LL+H + + +H+E IQDQVE LM+ GHH + R YVLYREER+ VR Sbjct: 61 LTGQVEAALLKHVRPDVALHVEQIQDQVELVLMRGGHHAVARAYVLYREERAKVR----- 115 Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + + + AP +++ DG + + R+ +V EAC+GL DVS+ VL+ET +N+YDG++ Sbjct: 116 AATASAPAPTIRVTHPDGQVTPLDWDRVAAVVAEACAGLTDVSADTVLAETRRNLYDGIT 175 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 +L TA I ++RTL+E EP+Y+ +AR LL+KLRRE L+ V +P +AT +M Y + Sbjct: 176 VDELATAQIMAARTLVETEPDYSFASARLLLDKLRREALSHVAGEPVEATGEQMS--YVD 233 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 YF Y+E GV L + FDL LA ++ ERD AF++LG+Q LYDRYFLH +G R Sbjct: 234 YFPAYVELGVSVDRLDPELRTFDLPRLAAAIRPERDLAFDFLGMQTLYDRYFLHDDGVRY 293 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQAFFMRVAMGLAL+E ++E RA+EFY LLSSF FMCSTPTLFNSGT PQLSSCFLT Sbjct: 294 ELPQAFFMRVAMGLALREDDREARAIEFYGLLSSFDFMCSTPTLFNSGTTRPQLSSCFLT 353 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV DDL IF + NA+LAKYSGGLGNDWTPVRG+GAHI GTNG+SQGV+PFLK+ANDT Sbjct: 354 TVDDDLDAIFRGYRNNALLAKYSGGLGNDWTPVRGMGAHIKGTNGQSQGVVPFLKIANDT 413 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AVAVNQGGKRKGA CAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV Sbjct: 414 AVAVNQGGKRKGAACAYLETWHVDVEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVE 473 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +A WTLFSPDE DLH+LYG F Y YE ADRGEI+V R++ AV LWR+MLT+LF Sbjct: 474 ADAEWTLFSPDETPDLHELYGTAFAQRYRAYEEAADRGEIRVHRRVRAVDLWRRMLTVLF 533 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S++E AVCNLGSINL H Sbjct: 534 ETGHPWITFKDPCNVRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSINLANHVTPT 593 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D D+LA T RTAVR+LDNVIDIN +TI +A++SN HR +GLGLMGF +L + IPY Sbjct: 594 GLDRDRLARTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGLMGFADSLFVQRIPY 653 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 AS EAVE AD SME ISFHA+ AS +LA ERG+Y SF+GSLW +GV PIDSI LLA+ R Sbjct: 654 ASSEAVEFADLSMELISFHALDASADLAAERGSYESFEGSLWSRGVLPIDSIALLADARG 713 Query: 735 -ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 L M+ +S L W ++ + + GMRNSN MAIAPTATI+NICGV QSI+P Y+NL+VK+ Sbjct: 714 GALDMDTSSTLDWSSVRDKARR-GMRNSNVMAIAPTATISNICGVGQSIEPLYRNLFVKA 772 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 NMSGDFTV+N LV +LK R LWD AM+SDLKY DG++ ++R+P +LK ++ATAFE+ Sbjct: 773 NMSGDFTVLNRHLVADLKARGLWDAAMVSDLKYFDGALTAVDRVPAELKALYATAFELSS 832 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 WL+E+ASRRQKWIDQAQSLNLYL PSG+ LD +YR AW GLKTTYYLRS SAT VEK Sbjct: 833 DWLVEAASRRQKWIDQAQSLNLYLAAPSGRALDELYRLAWRKGLKTTYYLRSASATHVEK 892 Query: 914 STLKGVDGKLNAVPVTDPNSSTH-----------------SLGIPSSCTSDTECEVCQ 954 STL+G DGKL V + + + +D +CE CQ Sbjct: 893 STLRGTDGKLTGVTLPPAAAPAARPAASSPSPAPVPELVLPAEGAACSITDPDCEACQ 950 >gi|262373380|ref|ZP_06066659.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter junii SH205] gi|262313405|gb|EEY94490.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter junii SH205] Length = 944 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 532/951 (55%), Positives = 682/951 (71%), Gaps = 40/951 (4%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 +QVIKR G + +F+ KIS AI KAF+AVEG+ + S R+ D I LTE + + Sbjct: 10 QLQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRISQLTEMVMNTFKRRL 69 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + P L+I Sbjct: 70 PSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQQTGANH-----HPTLQI 124 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +G L + L +E A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++R Sbjct: 125 TDHNGQLQPLDLDALTATIETASEGLEGIDVQAIVDETVKNLYNGVKESDIATTMMMATR 184 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T IE+EPNY VTAR L +L L + + + ++ ++++G++ Sbjct: 185 TRIEQEPNYTYVTARLLCNELVGTGLEFLGLSTDTSENDALEP--------FLKKGIELD 236 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL +++FDL L+ ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MG Sbjct: 237 LLSPDLLNFDLAKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMG 296 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA+ Sbjct: 297 LALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAM 356 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 417 VCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G EF Y +YE A + + +K+ A LWRKML+MLFETGHPWITFKD C Sbjct: 477 PDLHDLTGAEFAERYTHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVC 535 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H D +KLA TI+T Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTSQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKT 595 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESM Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESM 655 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ L+A+ R E ++RT RL Sbjct: 656 EVISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLELVAKSRPERMFEVDRTQRLD 715 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N + Sbjct: 716 WDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++ W++++ASRRQK Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVETRWIVDAASRRQK 835 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNA Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893 Query: 926 VPVTDPNSS---------------------THSLGIPSSCTSD-TECEVCQ 954 V + T + +P +C+ D +CE CQ Sbjct: 894 VKPASVEAPVVAAQAVEEKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944 >gi|294649453|ref|ZP_06726878.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter haemolyticus ATCC 19194] gi|292824658|gb|EFF83436.1| ribonucleoside-diphosphate reductase alpha subunit [Acinetobacter haemolyticus ATCC 19194] Length = 944 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 532/951 (55%), Positives = 680/951 (71%), Gaps = 40/951 (4%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 +QVIKR G + +F+ KIS AI KAF+AVEG+ + S R+ D I LTE + + Sbjct: 10 QLQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRL 69 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + P L+I Sbjct: 70 PSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQQTGANH-----HPTLQI 124 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 G L + L +E A +GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++R Sbjct: 125 TDAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATR 184 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T IE+EPNY VTAR L +L L + L + ++++G++ Sbjct: 185 TRIEQEPNYTYVTARLLCNELVSTGLEFLGLPTD--------TLEGDALETFLKKGIELD 236 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL +++FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MG Sbjct: 237 LLSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMG 296 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA+ Sbjct: 297 LALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAM 356 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 417 VCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G EF Y +YE A + + +K+ A LWRKML+MLFETGHPWITFKD C Sbjct: 477 PDLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVC 535 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+T Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKT 595 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESM Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESM 655 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E IS++AI S +LA ERGAYS+F+GSLWDQG+ PIDS+ ++A+ R E ++RT RL Sbjct: 656 EVISYYAIQTSSDLALERGAYSTFEGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLD 715 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N + Sbjct: 716 WDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQK Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQK 835 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNA Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893 Query: 926 VPVTDPNSS---------------------THSLGIPSSCTSD-TECEVCQ 954 V + T + +P +C+ D +CE CQ Sbjct: 894 VKPASVEAPVVAAQAVEDKKPEAQVEEEGFTTAAPVPMACSIDNPDCEACQ 944 >gi|226953557|ref|ZP_03824021.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter sp. ATCC 27244] gi|226835694|gb|EEH68077.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter sp. ATCC 27244] Length = 944 Score = 918 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 533/951 (56%), Positives = 680/951 (71%), Gaps = 40/951 (4%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 +QVIKR G + +F+ KIS AI KAF+AVEG+ + S R+ D I LTE + + Sbjct: 10 QLQVIKRTGEIATFNAEKISVAIGKAFLAVEGQQGADSSRIHDRITQLTEMVMNTFNRRL 69 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + P L+I Sbjct: 70 PSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRATARQQTGANH-----HPTLQI 124 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 G L + L +E A +GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++R Sbjct: 125 TDAKGQLQPLDLDALTATIETASAGLEGIDVQAIVDETVKNLYNGVKESDVATTMMMATR 184 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T IE+EPNY VTAR L +L L + L + ++++G++ Sbjct: 185 TRIEQEPNYTYVTARLLCNELVSTGLEFLGLPTD--------TLEGDALETFLKKGIELD 236 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL +++FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ FFMRV+MG Sbjct: 237 LLSPDLLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQLFFMRVSMG 296 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LAL E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA+ Sbjct: 297 LALNEENKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYDIYGAM 356 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+DVEEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 417 VCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G EF Y +YE A + + +K+ A LWRKML+MLFETGHPWITFKD C Sbjct: 477 PDLHDLTGAEFAERYAHYEAVAKEQNM-LHKKVRAKDLWRKMLSMLFETGHPWITFKDVC 535 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D +KLA TI+T Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVLDREKLARTIKT 595 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S AV+ ADESM Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGSDAAVDFADESM 655 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL Sbjct: 656 EVISYYAIQTSSDLALERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMFEVDRTQRLD 715 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N + Sbjct: 716 WDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D W++++ASRRQK Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTRWIVDAASRRQK 835 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNA Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893 Query: 926 VPVTDPNSS---------------------THSLGIPSSCTSD-TECEVCQ 954 V + T + +P +C+ D +CE CQ Sbjct: 894 VKPASVEAPVVAAQAVEDKKPEAQVEEDGFTTAAPVPMACSIDNPDCEACQ 944 >gi|255318311|ref|ZP_05359546.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter radioresistens SK82] gi|262379055|ref|ZP_06072211.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter radioresistens SH164] gi|255304623|gb|EET83805.1| ribonucleoside-diphosphate reductase subunit alpha [Acinetobacter radioresistens SK82] gi|262298512|gb|EEY86425.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter radioresistens SH164] Length = 942 Score = 916 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 527/958 (55%), Positives = 680/958 (70%), Gaps = 37/958 (3%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S P + +QVIKR G V +FD KIS AI KAF+AVEG+ ++ S RV D I LT Sbjct: 2 SAITSTPGQ---LQVIKRTGEVAAFDAEKISVAIGKAFLAVEGQQSADSSRVHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R Sbjct: 59 EMVMNTFKRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRNQARQQTGAHH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L+I G L + +L+ +E+A GL+ + + ++ ET KN+Y+G+ S Sbjct: 119 -----HPTLQITDSKGQLQPLDMSKLQTTLEKASEGLEGIDVQAIIDETVKNLYNGVKAS 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L ++L L + E Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLRDELVATGLAFLGLSEDTPES--------EAL 225 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++G++ LL ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 226 EAFLKKGIELELLDAELLKFDLKKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGIRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGLA++E ++E RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLAVQEDDREARAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 SDDLYNIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G F Y YE A + + +KI A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGSAFAERYAYYESVAKEQNM-LHKKIRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H + Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGKL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA T++TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ L + Y S Sbjct: 585 DREKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYELGMAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 AVE ADESME IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R + Sbjct: 645 DAAVEFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPDR 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL W+ L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWNTLRTKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK+R LWD M++DLK+ +GS+ I RIPD+LK I ATAFE++P Sbjct: 765 LSGEFTVINPYLVRALKERGLWDSVMVNDLKHFEGSVQKIARIPDELKAIFATAFEVEPR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYIAGANGKKLDLTYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKG-----------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 T+ + V + + + +P +C+ D +CE CQ Sbjct: 885 TINTGALNAVKATAAAPVAAAPVVETKPETVAEEDGFAQAAPVPMACSIDNPDCEACQ 942 >gi|262376781|ref|ZP_06070009.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter lwoffii SH145] gi|262308491|gb|EEY89626.1| ribonucleoside-diphosphate reductase, alpha subunit [Acinetobacter lwoffii SH145] Length = 945 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 527/950 (55%), Positives = 676/950 (71%), Gaps = 37/950 (3%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 +QVIKR G V +FD KIS AI KAF+AVEG+ ++ S R+ D I+ LTE + + Sbjct: 10 QLQVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSADSSRIHDRIEQLTEMVLNTFKRRL 69 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S +HIE+IQDQVE +LM++G K+ R YV+YRE+RS+ R P L+I Sbjct: 70 PSGGTIHIEEIQDQVELALMRTGEQKVARSYVIYREQRSEARKQLGAHH-----HPTLQI 124 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +G L + L V +A GL+ + + ++ ET KN+Y+G+ ESD+ T ++ ++R Sbjct: 125 TDAEGKLKPLDLSALTAHVTKAAEGLEGIDVQAIVDETVKNLYNGVKESDISTTMMMATR 184 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T IE+EPNY VTAR L + L L + ++ Y+++G++ Sbjct: 185 TRIEQEPNYTYVTARLLRDDLVATGLKFLGLPVDTVEGDALET--------YLKKGIELE 236 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL +++FDL LA ++ ER F YLGLQ L+DRYF+H +G R E+PQ FFMRV+MG Sbjct: 237 LLSPELLNFDLAKLAAAIQPERSNQFTYLGLQTLFDRYFIHSDGVRFELPQLFFMRVSMG 296 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 L+L E +E RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA+ Sbjct: 297 LSLNEENREDRAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIDDDLYDIYGAM 356 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++A WTLF+P E Sbjct: 417 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDAEWTLFTPSET 476 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G EF Y +YE A + + +KI A LWRKML+MLFETGHPWITFKD C Sbjct: 477 PDLHDLTGAEFAERYAHYEAIAKETNM-LHKKIRAKDLWRKMLSMLFETGHPWITFKDVC 535 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN+S EE AVCNLGSINL+ H D +KLA T++T Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSINLVQHVQGGVLDREKLARTVKT 595 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN + + +A+ SN HR +G+G+MGFQ AL+ +++ Y S AVE ADESM Sbjct: 596 AVRMLDNVIDINYYAVPQARNSNLKHRPVGMGIMGFQDALYEMNVAYGSDAAVEFADESM 655 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E IS++AIS S +LA ERG Y +FKGSLWDQG+ PIDS+ L+A+ R E ++RT RL Sbjct: 656 EVISYYAISTSSDLAVERGTYETFKGSLWDQGILPIDSLDLVAKTRPERMFEVDRTQRLD 715 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N + Sbjct: 716 WDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++ W++++ASRRQK Sbjct: 776 LVRALKERGLWDAVMVNDLKHFEGSVQKISRIPEELKAIFATAFEVETRWIVDAASRRQK 835 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG------- 918 WIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTINTGALNAVK 895 Query: 919 -------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 V + + +P +C+ D +CE CQ Sbjct: 896 PATVAAPVVAAAPVVEAQKPEAPAEEEGFAQAAPVPMACSIDNPDCEACQ 945 >gi|226940722|ref|YP_002795796.1| NrdA [Laribacter hongkongensis HLHK9] gi|226715649|gb|ACO74787.1| NrdA [Laribacter hongkongensis HLHK9] Length = 917 Score = 915 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 538/925 (58%), Positives = 673/925 (72%), Gaps = 21/925 (2%) Query: 32 IKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSAL 91 I+R G V F+ KI+ A+ KAF+AV+G+ A +S R++D + LT+ V L Sbjct: 12 IRRTGDVVPFNADKIALAMRKAFIAVQGESAGQSSRLRDEVARLTQDVVNALTGRRPEGS 71 Query: 92 IVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDD 151 + IEDIQDQVE +LM+SG H++ R YVLYRE R+ H+ P L + D Sbjct: 72 AIAIEDIQDQVELALMRSGEHEVARAYVLYREARAAE-RRARHAALGIDQLPALHVTRPD 130 Query: 152 GTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 G+ + +RL +E AC GL+ D +L++T KN+YDG++E+++E ALI S+R I Sbjct: 131 GSRAPLDIERLGRQLEAACHGLEADTRPAALLADTLKNLYDGVTEAEVERALILSARQWI 190 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 E++P Y KVTAR LL+ +RREV + Y E F + I+ G++A LL Sbjct: 191 ERDPAYDKVTARLLLDTIRREVAGG------------VAATYAEVFQQGIQRGMQADLLD 238 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 + DFDL LA L ERD F YLGLQ LYDRYFLH++G RIEMPQ FFMRVAMGLAL Sbjct: 239 PRLADFDLPRLAAALDGERDRQFGYLGLQTLYDRYFLHVDGRRIEMPQTFFMRVAMGLAL 298 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 E + +A+EFY+LLS F FM STPTLFN+GTRH QLSSC+LTT+ D L GIF A++EN Sbjct: 299 NEADPTTQAMEFYDLLSRFDFMSSTPTLFNAGTRHSQLSSCYLTTIADSLDGIFDAIKEN 358 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A L+K++GGLGNDWTPVR LG+HI GTNG+SQGV+PFLKVANDTAVAVNQGGKRKGAVCA Sbjct: 359 AQLSKFAGGLGNDWTPVRALGSHIKGTNGQSQGVVPFLKVANDTAVAVNQGGKRKGAVCA 418 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFM+RV +NA WTLFSP +V DL Sbjct: 419 YLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMQRVMENAEWTLFSPADVPDL 478 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 HDL G+ F Y YE A ++ + + AV LWRKMLTMLFETGHPW+T+KD CN+R Sbjct: 479 HDLTGRAFARRYAEYEAMARADTLRNAKTLRAVDLWRKMLTMLFETGHPWLTWKDACNLR 538 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 SPQQHVG VHSSNLCTEITLN+S +E AVCNLGS+NL H D +KLA T+R A+R Sbjct: 539 SPQQHVGRVHSSNLCTEITLNTSDDEIAVCNLGSVNLANHLKEGALDQEKLARTVRVAMR 598 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +EKA+ +N HR +GLG+MGFQ LHLL +PY S AV ADESME I Sbjct: 599 MLDNVIDLNFYPVEKARTANLRHRPVGLGVMGFQDCLHLLRLPYGSQAAVGFADESMELI 658 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDEL 749 ++HA AS ELA+ RG Y SF+GSLW QG+ P DS+ LLA R L ++R+SRL W + Sbjct: 659 AYHAYLASTELAEMRGCYPSFEGSLWSQGILPQDSVELLAAERQGYLEVDRSSRLDWTPV 718 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++R+ GMRNSNC+AIAPTATIANI GVS SI+P+Y+NL+VKSN+SG+FTVVN FLV + Sbjct: 719 RERIARFGMRNSNCLAIAPTATIANIIGVSASIEPTYKNLFVKSNLSGEFTVVNEFLVQD 778 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 LK+ LWD M++DLKY DG + IERIP D+K ++ATAF++DP WL+E+ASRRQKWIDQ Sbjct: 779 LKRLGLWDAVMLADLKYFDGDLAPIERIPQDIKTLYATAFDVDPGWLVEAASRRQKWIDQ 838 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 AQSLNLY+ SGKKLD +Y+ AW+ GLKTTYYLR+ +ATS EKST +G G+LNAVP+ Sbjct: 839 AQSLNLYMAGASGKKLDTLYKLAWVRGLKTTYYLRTLAATSAEKSTGRG--GELNAVPIE 896 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 + + +CE CQ Sbjct: 897 GGMVAEP----KFCSIDNPDCEACQ 917 >gi|325001022|ref|ZP_08122134.1| ribonucleoside-diphosphate reductase alpha chain [Pseudonocardia sp. P1] Length = 927 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 543/936 (58%), Positives = 678/936 (72%), Gaps = 18/936 (1%) Query: 7 VNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSI 66 A P+ P ++VI+R+G TSFD SKIS A+ KAF+AVEG + S Sbjct: 2 TASTAPPASPNGIAPAA-----LRVIRRDGSETSFDASKISVAMTKAFLAVEGGAGASSS 56 Query: 67 RVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS 126 R+ +++ LT Q V L +H +V +E IQDQVE +LM+ HHK+ R YVLYRE+++ Sbjct: 57 RLHPLVQELTGQVVAALHRH--PTPVVQVEQIQDQVELALMRGEHHKVARSYVLYREQQA 114 Query: 127 DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 RA+ + + + + DGT + R+E ++ EA G+ DV + VL+E Sbjct: 115 QARASGPDAGGASA---TIHVTGPDGTRAPLDRDRVETVLAEALDGIDDVEAAPVLAELD 171 Query: 187 KNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +YDG++ +L AL+ ++RTL+E+EP+Y+ V +R L+++LR E ++ + + Sbjct: 172 RTVYDGITADELSQALVMAARTLVEREPDYSLVASRLLMDRLRAEAVSHLSGTRETPDQA 231 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 M Y Y Y+ + L+ + FDL + L ERD +LGLQ LYDRYF Sbjct: 232 TMARDYASYTKDYLRHAIAIGLVDAELATFDLDRVTAALHPERDLQIGFLGLQTLYDRYF 291 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 LH +G+R E+PQAFF+RVAMGLA++E ++E RA+EFY LLSSF FM STPTLFNSGT P Sbjct: 292 LHEHGTRFELPQAFFLRVAMGLAVREVDREARAIEFYELLSSFDFMASTPTLFNSGTTRP 351 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 QLSSCFLTTV DDL IFG + NA+LAKYSGGLGNDWTPVRGLGAHI GTNG SQGV+P Sbjct: 352 QLSSCFLTTVDDDLDSIFGGYRNNALLAKYSGGLGNDWTPVRGLGAHIRGTNGVSQGVVP 411 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 FLK+A DTAVAVNQGGKRKGA CAYLETWH+D+EEFLDLRKNTGDDRRRTHDMNTANW+P Sbjct: 412 FLKIAGDTAVAVNQGGKRKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVP 471 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 D F++RV + WTLFSPDEV DLHDLYG EF Y YE A+RGE++V R + AV LW Sbjct: 472 DEFLRRVEADTTWTLFSPDEVPDLHDLYGLEFAERYRAYEAAAERGELRVHRTVRAVDLW 531 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVC 600 R+MLTMLFETGHPW+TFKDPCN+RSPQQH GVVHSSNLCTEITLN+ E AVC Sbjct: 532 RRMLTMLFETGHPWVTFKDPCNLRSPQQHAGVVHSSNLCTEITLNTRAGHDDDRGEVAVC 591 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGS+NL AH + D DKL T+ TAVR+LDNV+DIN +TI +A++SN HR +GLG+ Sbjct: 592 NLGSVNLAAHVTRDGLDADKLRRTVTTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGM 651 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MGF AL L I S AV AD S E +S+HAI+AS +LA ERG Y+SF+GSLW +GV Sbjct: 652 MGFSDALFLQRIAPGSEAAVGFADVSAEVLSYHAIAASSDLAAERGRYASFEGSLWSRGV 711 Query: 721 FPIDSIGLLAEVR--DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 PIDS+ LLA+ R EL ++R+S L W L++ V+T GMRNSN +AIAPTATI+NICGV Sbjct: 712 LPIDSLDLLADARGEGELEIDRSSTLDWASLRETVRTQGMRNSNVLAIAPTATISNICGV 771 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 QSI+P + NLYVKSNMSGDFTVVN LV +LK+R LWDE M+SDLKY DGS+ I+R+P Sbjct: 772 GQSIEPIHLNLYVKSNMSGDFTVVNPHLVRDLKERGLWDEVMVSDLKYFDGSLAEIDRVP 831 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 DLK+++ATAFEI+P WL+E+ASRRQKW+DQAQSLNLYL PSG+KLD +YR AW GLK Sbjct: 832 GDLKELYATAFEIEPRWLVEAASRRQKWLDQAQSLNLYLAGPSGRKLDELYRLAWRSGLK 891 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 TTYYLR+R+ATSVEKSTLKG DG+L VP + Sbjct: 892 TTYYLRTRAATSVEKSTLKGTDGRLTGVPTGTSGPA 927 >gi|50083945|ref|YP_045455.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter sp. ADP1] gi|49529921|emb|CAG67633.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter sp. ADP1] Length = 941 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 540/948 (56%), Positives = 689/948 (72%), Gaps = 37/948 (3%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 +QVIKRNG V +FD KIS AI KAF+AVEG+ ++ S R+ D I LTE + + Sbjct: 10 QLQVIKRNGEVATFDAEKISVAIGKAFLAVEGQQSADSSRIHDRISQLTEMVLNTFNRRL 69 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 S +HIE+IQDQVE +LM++G HKI R YV+YRE+RS+ R + P L+I Sbjct: 70 PSGGTIHIEEIQDQVELALMRTGEHKIARSYVIYREQRSNARQQSGANH-----HPTLQI 124 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 G L + L+ VE+A GL+ + + ++ ET KN+Y+G+ SD+ T ++ ++R Sbjct: 125 TDAQGQLQPLDLDALKATVEKAAEGLEGIEIQAIVEETVKNLYNGVKVSDIATTMMMATR 184 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 T IE EPNY VTAR L +L + L + A + ++ ++++GV+ Sbjct: 185 TRIEHEPNYTYVTARLLRNELVAKGLEFLGLSEDTAENDALET--------FLKKGVELE 236 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 LL +++FDL LA ++ ER F YLGLQ LYDRYF+H +G R E+PQ FFMRV+MG Sbjct: 237 LLDPELLNFDLATLAAAIQPERSNQFTYLGLQTLYDRYFIHSDGVRYELPQLFFMRVSMG 296 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 LA+ E +E+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ DDLY I+GA+ Sbjct: 297 LAINEDNREERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGDDLYNIYGAI 356 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 ++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA Sbjct: 357 RDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGA 416 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 VCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ WTLF+P EV Sbjct: 417 VCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWLPDLFMQRVFEDGEWTLFTPSEV 476 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DLHDL G+EF Y YE A + + +K+ A LWRKML+MLFETGHPWITFKD C Sbjct: 477 PDLHDLTGEEFAQRYAYYESIAKEQNL-LHKKVRAQDLWRKMLSMLFETGHPWITFKDVC 535 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N+RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL+ H D DKLA TI+T Sbjct: 536 NLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSINLVQHVQGGVLDRDKLARTIKT 595 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ +++ Y S EAV ADESM Sbjct: 596 AVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNMAYGSDEAVNFADESM 655 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLP 745 E IS++AI S +LA ERG YS+FKGSLWDQG+ PIDS+ ++A+ R E ++RT RL Sbjct: 656 EVISYYAIQTSSDLAIERGVYSTFKGSLWDQGILPIDSLDIVAKSRPERMFEVDRTQRLD 715 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+SG+FTV+N + Sbjct: 716 WDTLRNKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLSGEFTVINPY 775 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W++++ASRRQK Sbjct: 776 LVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWIVDAASRRQK 835 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ G LNA Sbjct: 836 WIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTIN--TGALNA 893 Query: 926 VP------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 V VT + T + +P +C+ D +CE CQ Sbjct: 894 VKPTTVAAPVAAVAQETKPEVTAEDGFTTAAPVPMACSIDNPDCEACQ 941 >gi|94986919|ref|YP_594852.1| ribonucleotide-diphosphate reductase subunit alpha [Lawsonia intracellularis PHE/MN1-00] gi|94731168|emb|CAJ54530.1| Ribonucleotide reductase large subunit [Lawsonia intracellularis PHE/MN1-00] Length = 916 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 541/931 (58%), Positives = 677/931 (72%), Gaps = 24/931 (2%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + +QVI+RNG + SF KI+ A+ KAF+AV+G+ + S ++D++ +LTE ++ L Sbjct: 9 SLAAMQVIRRNGDIVSFKSEKIAAALTKAFIAVKGEQSPLSSSLRDVVTHLTETVISALT 68 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +HIEDIQDQVE +LMQSG H + R YVLYRE+R+ +R + Sbjct: 69 HRFPDGGSIHIEDIQDQVERALMQSGEHDVARAYVLYREKRAAMRNTSEKKAVLHLVDK- 127 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 G + L I AC L VSS + + T K++YDG+S +D+ ++LI Sbjct: 128 -------GEKKVLDHTWLMNICHVACKNLTSVSSISIFNNTLKSLYDGMSLADVYSSLIL 180 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S+RT+IE EP Y KVTAR L L EVL + H+++ YF ++IE G+ Sbjct: 181 SARTMIEYEPEYNKVTARLLRLSLAYEVLDQSTELMDL---HQLKIATISYFPKFIELGI 237 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 A LL + F+ YLA L ERD F Y+G+Q LYDRYFLHI RIE+PQ FFMRV Sbjct: 238 NAGLLDPRLSTFNYSYLAQALVPERDELFGYIGIQTLYDRYFLHIKKRRIELPQLFFMRV 297 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL E +KE +A+EFYNLLS+F FM STPTLFNSGT PQLSSCFLTT+ DDL IF Sbjct: 298 AMGLALNEKKKEDKAIEFYNLLSNFDFMSSTPTLFNSGTIRPQLSSCFLTTINDDLENIF 357 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 +++ENA+L KY+GG+GNDWTPVR LG+ I GTNG+SQGVIPF+KVANDTA+AVNQGGKR Sbjct: 358 QSIKENALLQKYAGGIGNDWTPVRALGSPIKGTNGQSQGVIPFMKVANDTALAVNQGGKR 417 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+E+FLDLRKNTGDDRRRTHDMNTANW+PDLFMKRV +N+ WTLFSP Sbjct: 418 KGAVCAYLETWHLDIEDFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVLENSDWTLFSP 477 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 ++V +LH+ +G EFE Y +YE + GEI +F+K+SAV LWRKMLTMLFETGHPWITFK Sbjct: 478 NDVPELHEKFGLEFEKFYTHYEAKTLTGEITLFKKVSAVQLWRKMLTMLFETGHPWITFK 537 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 D CN+RSPQQH+GV+HSSNLCTEITLN+S EE AVCNLGSINL +H N + D +KL+ T Sbjct: 538 DACNLRSPQQHIGVIHSSNLCTEITLNTSKEEIAVCNLGSINLSSHLINGEVDQNKLSQT 597 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I TA+R+LDNVIDIN + KA +N HR IG+G+MGF L+ L IPYAS +AVE AD Sbjct: 598 IATALRMLDNVIDINYYNSPKASYANLQHRPIGIGIMGFADCLYKLGIPYASHQAVEFAD 657 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSR 743 SME + ++ AS ELA+ERGAYS+F GSLWD+ + P+DS+ LL + R ++R+SR Sbjct: 658 RSMEIVCYYTYWASTELAKERGAYSTFPGSLWDRKILPLDSLDLLLKERGGFLEVDRSSR 717 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD LK R+ GMRNSNC+++APTATI+NI GVSQ I+P+YQNLYVKSNMSG+FT+VN Sbjct: 718 LDWDALKDRIAKYGMRNSNCVSLAPTATISNIIGVSQGIEPAYQNLYVKSNMSGEFTIVN 777 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +LVN+LK+ +LWDEAM++DLKY DGS+ I+R+PD LKK++ATAFEIDP+WLIE+ASRR Sbjct: 778 EYLVNDLKKLNLWDEAMVADLKYFDGSVAYIDRVPDSLKKLYATAFEIDPVWLIEAASRR 837 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 QKWIDQAQSLNLYLD PSGKK+D IY+ AWL GLKTTYYLRS A+ VEK Sbjct: 838 QKWIDQAQSLNLYLDTPSGKKMDEIYKLAWLRGLKTTYYLRSLGASQVEK---------- 887 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + + + D ECE CQ Sbjct: 888 --VGTNSQSVLKKDTVLRACSIDDPECEACQ 916 >gi|262280151|ref|ZP_06057936.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202] gi|262260502|gb|EEY79235.1| ribonucleotide reductase [Acinetobacter calcoaceticus RUH2202] Length = 943 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 532/961 (55%), Positives = 685/961 (71%), Gaps = 42/961 (4%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ P +I QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LT Sbjct: 2 SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + + Sbjct: 59 EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQQTNSNH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L++ +G L + L+ + +A GL+ + + ++ ET KN+Y+G+ E+ Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATIAKAAEGLEGIDVQAIVDETVKNLYNGVKET 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L +L L + + ++ Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPENTALE------- 226 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++GV+ LL ++DFDL LA ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 227 -AFLKKGVELDLLSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGL L E KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLTLNEQNKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA TI+TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ ++I Y S Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 A++ ADESME IS++AI S LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 645 DAAIDFADESMEVISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYIAGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKGVDGKLNAVPVTDPNSST--------------------HSLGIPSSCTSD-TECEVC 953 T+ G LNAV ++ + +P +C+ D +CE C Sbjct: 885 TIN--TGALNAVKPATVEAAPVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEAC 942 Query: 954 Q 954 Q Sbjct: 943 Q 943 >gi|325121076|gb|ADY80599.1| ribonucleoside diphosphate reductase, alpha subunit [Acinetobacter calcoaceticus PHEA-2] Length = 944 Score = 908 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 533/960 (55%), Positives = 681/960 (70%), Gaps = 39/960 (4%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ P +I QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LT Sbjct: 2 SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + + Sbjct: 59 EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQQTNSNH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L++ +G L + L+ V +A GL+ + + ++ ET KN+Y+G+ ES Sbjct: 119 -----HPTLQVTDTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKES 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L +L LT + + Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPEN--------NAL 225 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++GV+ LL ++DFDL L+ ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 226 EAFLKKGVELDLLSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA TI+TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 AV+ ADESME IS++AI S LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 645 DAAVDFADESMEVISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKG-------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 T+ V + T + +P +C+ D +CE CQ Sbjct: 885 TINTGALNAVKPATVEAAAVAAPVVEAKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944 >gi|293609144|ref|ZP_06691447.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829717|gb|EFF88079.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 944 Score = 908 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 533/960 (55%), Positives = 681/960 (70%), Gaps = 39/960 (4%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ P +I QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LT Sbjct: 2 SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + + Sbjct: 59 EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRASARQQTNSNH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L++ +G L + L+ V +A GL+ + + ++ ET KN+Y+G+ ES Sbjct: 119 -----HPTLQVTDTNGQLQPLDLSALQATVSKAAEGLEGIDVQAIVDETVKNLYNGVKES 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L +L LT + + Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLCNELVSTGLTFLGLSTDTPEN--------NAL 225 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++GV+ LL ++DFDL L+ ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 226 EAFLKKGVELDLLSPDLLDFDLEKLSAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA TI+TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + I Y S Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGIAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 AV+ ADESME IS++AI S LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 645 DAAVDFADESMEVISYYAIETSSNLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D Sbjct: 765 LSGEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKG-------------------VDGKLNAVPVTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 T+ V + T + +P +C+ D +CE CQ Sbjct: 885 TINTGALNAVKPATVEAAAVAAPVVEVKKPEAAVEEEGFTQAAPVPMACSIDNPDCEACQ 944 >gi|299771425|ref|YP_003733451.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter sp. DR1] gi|298701513|gb|ADI92078.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter sp. DR1] Length = 943 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 535/961 (55%), Positives = 685/961 (71%), Gaps = 42/961 (4%) Query: 17 SLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLT 76 S+ P +I QVIKR G V +FD KIS AI KAF+AVEG+ +S S R+ D I LT Sbjct: 2 SVITSTPGQI---QVIKRTGDVAAFDAEKISVAIGKAFLAVEGQQSSDSSRIHDRITQLT 58 Query: 77 EQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK 136 E + + S +HIE+IQDQVE +LM++G K+ R YV+YRE+R+ R + + Sbjct: 59 EMVLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEQKVARAYVIYREQRTTARQQTNSNH 118 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P L++ +G L + L+ V +A GL+ + + ++ ET KN+Y+G+ ES Sbjct: 119 -----HPTLQVTDANGQLQPLDLSALQATVAKAAEGLEGIDVQAIVDETVKNLYNGVKES 173 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 D+ T ++ ++RT IE+EPNY VTAR L +L L + + Sbjct: 174 DIATTMMMATRTRIEQEPNYTYVTARLLSSELVSTGLAFLGLPTDTPEN--------NAL 225 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 ++++GV+ LL ++DFDL LA ++ ER F YLGLQ L+DRYF+H NG R E+ Sbjct: 226 EAFLKKGVELDLLSPDLLDFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFEL 285 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ Sbjct: 286 PQLFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTI 345 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAV Sbjct: 346 GDDLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAV 405 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 406 AVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFED 465 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFET Sbjct: 466 GEWTLFTPSETPDLHDLTGAEFAERYAYYESVAKETNM-LHKKVRAKDLWRKMLSMLFET 524 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 GHPWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H Sbjct: 525 GHPWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVQGGVL 584 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D +KLA TI+TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ ++I Y S Sbjct: 585 DREKLARTIKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMNIAYGS 644 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE- 735 A++ ADESME IS++AI S LA ERG+YS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 645 DAAIDFADESMEVISYYAIETSSNLAVERGSYSTFKGSLWDQGILPIDSLEIVAKSRPER 704 Query: 736 -LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN Sbjct: 705 MFEVDRTQRLDWDTLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSN 764 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+FTV+N +LV LK R LWD M++DLK+ +GS+ I RIP++LK I ATAFE+D Sbjct: 765 LSGEFTVINPYLVRALKDRGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVDTR 824 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 W++++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKS Sbjct: 825 WIVDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKS 884 Query: 915 TLKGVDGKLNAVP--------------------VTDPNSSTHSLGIPSSCTSD-TECEVC 953 T+ G LNAV + + T + +P +C+ D +CE C Sbjct: 885 TIN--TGALNAVKPATVEAAAVAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEAC 942 Query: 954 Q 954 Q Sbjct: 943 Q 943 >gi|268316002|ref|YP_003289721.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus marinus DSM 4252] gi|262333536|gb|ACY47333.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus marinus DSM 4252] Length = 926 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 519/933 (55%), Positives = 654/933 (70%), Gaps = 30/933 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR--SIRVQDIIKNLTEQTVTRLLQHNK 88 V+KR+G SFD +I RA+ KAF A A S + + I+ LT V + + Sbjct: 15 VVKRDGRRVSFDAERIRRALEKAFRATLELPADAPLSAELSEEIEALTGAVV----RWCR 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 V +E+IQD+VE +LM++G + + R Y+LY ++++A +L Sbjct: 71 DRAEVSVEEIQDEVERTLMRAGRYAVARRYILY-----------REARAEARRRQQLTYR 119 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DGT F + L +E AC GL DV ++V E + +Y G+ E +L+ ALI ++RT Sbjct: 120 RADGTEAPFPHEALRARIEAACDGLDDVDPELVREELLRTVYPGIPEDELDRALILAART 179 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE+EP+Y V AR LL+ L REV ++A F Y+E GV+ Sbjct: 180 HIEREPDYTYVAARLLLDALYREVFGRPIPPSEQA------EACRAGFRAYLEHGVRLGR 233 Query: 269 LHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 L E + FD+ LA L ERD F +LGLQ LYDRY LH G R E+PQ +MRVAM Sbjct: 234 LDERLLRTFDIDRLAAALHPERDRRFTFLGLQTLYDRYLLHEPEGRRFELPQYLWMRVAM 293 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 GLAL E + RA++FY LLSSF FM STPTLFN+GT HPQLSSC+LTTV DDL IF A Sbjct: 294 GLALAEDDPTARAIQFYELLSSFRFMNSTPTLFNAGTPHPQLSSCYLTTVQDDLGAIFKA 353 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 +++NA+L+K++GGLGNDWTPVR LGAHI GTNG+SQGVIPFLK+ NDTAVAVNQGGKRKG Sbjct: 354 IRDNALLSKWAGGLGNDWTPVRALGAHIRGTNGRSQGVIPFLKIVNDTAVAVNQGGKRKG 413 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 AVCAYLE WH+D+EEFL+LR+NTGD+RRRTHDMNTA WIPDLFM+RV + WTLFSPDE Sbjct: 414 AVCAYLEVWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFSPDE 473 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V DLHDLYG+ F YE+YER+A+ G I+ +R+I AVALWRKML+MLFETGHPW+TFKDP Sbjct: 474 VPDLHDLYGRAFRERYEHYEREAEAGRIRNWRRIEAVALWRKMLSMLFETGHPWLTFKDP 533 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDYDKLASTI 625 CNIRSPQ HVGVVHSSNLCTEITLN+S EE AVCNLGSINL + D +KL TI Sbjct: 534 CNIRSPQDHVGVVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGELDREKLRDTI 593 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 RTAVR+LDNVID+N + I +A+ SN HR IGLGLMGFQ L+ + YAS AVE+ADE Sbjct: 594 RTAVRMLDNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVELADE 653 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744 MEFI++ A AS +LA ERGAY +FKGS WD+G+ P+D++ LL R + + RT+RL Sbjct: 654 FMEFIAYCAYEASSDLAAERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEPVPVPRTARL 713 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD L+++++ GMRNSN +AIAPTATIANICGVS SI+P+Y+NLYVKSN+SG+FT +N Sbjct: 714 DWDALREKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFTQLNP 773 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK R LWD+ M+ DLKY+DGS+ I+RIP +LK + TAFEI+P WLIE A+RRQ Sbjct: 774 YLVRDLKARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLIECAARRQ 833 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWIDQ+QSLNLYL EPSG+KL +Y+ AW +GLKTTYYLR+ +AT +EKSTL + Sbjct: 834 KWIDQSQSLNLYLAEPSGRKLSEMYQLAWQLGLKTTYYLRALAATQIEKSTLDINRRGIQ 893 Query: 925 AVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954 + + S+ P+ D CE CQ Sbjct: 894 PRWMKSRSPSSDIVVRRDGPACSPDDESCEACQ 926 >gi|189219088|ref|YP_001939729.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to ATP-cone domains [Methylacidiphilum infernorum V4] gi|189185946|gb|ACD83131.1| Oxygen-sensitive ribonucleotide reductase, alpha subunit fused to ATP-cone domains [Methylacidiphilum infernorum V4] Length = 942 Score = 900 bits (2326), Expect = 0.0, Method: Composition-based stats. Identities = 512/945 (54%), Positives = 658/945 (69%), Gaps = 23/945 (2%) Query: 21 PFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG--ASRSIRVQDIIKNLTEQ 78 F + + ++KR+G V FDP +I A+ KAF A GK + S + I+ +T Sbjct: 10 EFDAHLSALSIVKRDGRVVPFDPHRIRAAVEKAFRADRGKNVGEALSSEDRAAIEEITSA 69 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 V++ + +E IQD VE +LM+ G+H + + Y+LYR +R R ++ Sbjct: 70 VVSKSAALAGRGERLEVERIQDLVELTLMELGYHTVAKRYILYRADRGRARTIKNREGV- 128 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESD 197 + ++ G + + + + EAC GL++ S + + ET + +YD + E D Sbjct: 129 -----SIHMIDKQGRKVPLDLAWIHRTLMEACRGLEESCSWRELAEETVRGLYDEIKEED 183 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + A+I ++R+ +EKEP Y V AR +L K+ E L+ + HE + YF Sbjct: 184 VVQAMILTARSWVEKEPAYTYVAARLMLGKIYEEALS------LVPSIHETAEYHKAYFP 237 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 YI+ GVK L +++F+L LA L+ ERD F YLGLQILYDRY LH RIE P Sbjct: 238 SYIDFGVKIGRLSPRLLEFNLEKLAQALRLERDRQFSYLGLQILYDRYLLHHEERRIETP 297 Query: 318 QAFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q F+MRVAMGLAL E ++E A+ FY+ LS F FM STPTLFNS T HPQLSSC+L TV Sbjct: 298 QYFWMRVAMGLALNEKEDRELWAIRFYDTLSRFLFMASTPTLFNSATIHPQLSSCYLLTV 357 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDL GIF + +NA L+K++GGLGNDWT VR G+ I GTNGKSQGVIPFLKVANDTAV Sbjct: 358 EDDLDGIFKVISDNARLSKWAGGLGNDWTNVRATGSLIRGTNGKSQGVIPFLKVANDTAV 417 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 AVNQGGKRKGA+CAYLETWH+D+E+FL+LRKNTGD+RRRTHDMNTANWIPDLFMKRV QN Sbjct: 418 AVNQGGKRKGALCAYLETWHLDIEDFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLQN 477 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLFSP +V DLH LYGK+FE Y YE+ ADRGEIK+F+++SAV LWRKMLT+LFET Sbjct: 478 GSWTLFSPSDVPDLHHLYGKDFEKRYVEYEQMADRGEIKLFKRVSAVDLWRKMLTLLFET 537 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQ 615 GHPWITFKDP NIRSPQ HVGV++SSNLCTEI LN+S EE AVCNLGSINL AH + + Sbjct: 538 GHPWITFKDPSNIRSPQDHVGVINSSNLCTEILLNTSPEEVAVCNLGSINLAAHLDESGE 597 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D KL TIR AVR+LDNVIDIN + I +A+ +N HR +GLG+MGFQ L++ IPY Sbjct: 598 IDEKKLQETIRIAVRMLDNVIDINFYPIPEARNANLRHRPVGLGIMGFQDVLYIKKIPYG 657 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-D 734 S +AVE+AD ME +S+HAI +S ELA+ERG+YS+FKGS WD+G+ PID+I LL E R Sbjct: 658 SEKAVEVADRLMEMVSYHAILSSCELAKERGSYSTFKGSKWDRGLLPIDTIDLLEEQREG 717 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + ++R+ WD ++K++K G+RNS +AIAPTATI+NI GV QSI+PSY+NLYVKSN Sbjct: 718 FVEVDRSQTKDWDYVRKKIKEQGLRNSCLLAIAPTATISNITGVCQSIEPSYKNLYVKSN 777 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SGDF +N +LV +LK+ +LWD+ MI DLKY+DGS+ IERIP +LK+++ATAFEIDP Sbjct: 778 LSGDFISINPYLVADLKKLNLWDQEMIDDLKYYDGSVKPIERIPQELKELYATAFEIDPY 837 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 ++IE ASRRQKWID QSLNLY+DEPSG K+ +Y W GLKTTYYLRSR+AT+VEKS Sbjct: 838 FIIECASRRQKWIDMGQSLNLYVDEPSGWKISQMYILCWKKGLKTTYYLRSRAATTVEKS 897 Query: 915 TLKGV-----DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 TL + + + + ++C+ D ECE CQ Sbjct: 898 TLDVNARGIQPRWMKSKSPSANIRVERNEKEKNACSLDPECESCQ 942 >gi|87311396|ref|ZP_01093516.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula marina DSM 3645] gi|87285808|gb|EAQ77722.1| ribonucleotide-diphosphate reductase alpha subunit [Blastopirellula marina DSM 3645] Length = 973 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 504/972 (51%), Positives = 666/972 (68%), Gaps = 29/972 (2%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 P ++ D ++ P ++V KR+G + SFD +I AI KAF A G Sbjct: 12 QPVQEEPFEGADVMTTVTSPA----VALEVRKRDGRIISFDVGRIHYAIGKAFRAEIGVA 67 Query: 62 ASRSIR--VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYV 119 + + ++D +K+++E + ++ S V +E IQD VE LM+ GH + R Y+ Sbjct: 68 DGQELENSLEDQVKSISEAVIDQIESRPFSRDGVDVESIQDAVEIQLMRHGHFSVARRYI 127 Query: 120 LYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSS 178 LYREE + +RA ++ I P++ + +DG F++ RL V A GL+ + S+ Sbjct: 128 LYREEHAKLRALRAADSDGNLIPPRINVKQEDGAKEPFDATRLRRRVYSAVRGLEQNCSA 187 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + ++ ETY+++YDG++ ++ A+I +SR+ IE++P+Y KV AR +L + E + ++ Sbjct: 188 EELVEETYRSLYDGITPQEIYRAMILASRSRIERDPDYDKVAARLMLMVIYNEAIGRLHP 247 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 K ++ + F YI G++A L E + DFDL ++ L+ ERD AF YLGL Sbjct: 248 K------EDIAEVTRREFSTYISTGIEAGRLAERLRDFDLEKISAALRPERDAAFPYLGL 301 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 Q +YDRY LHI+G RIE PQ F+MRVAMGLA E KE+RA+EFYN+LS+F F +TPTL Sbjct: 302 QTIYDRYLLHIDGRRIETPQYFWMRVAMGLAWNEENKEERAIEFYNILSTFRFTSATPTL 361 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 FNSGT HPQLSSC+L+TV DDL IF + +NAML+K++GGLGNDWT +R AHI GTN Sbjct: 362 FNSGTLHPQLSSCYLSTVDDDLEHIFKVVSDNAMLSKWAGGLGNDWTNIRATNAHIKGTN 421 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 G+SQGVIPFLKV NDTA+AVNQGGKRKGAVC+YLE+WH+DVEEFLDLRKNTGDDRRRTHD Sbjct: 422 GQSQGVIPFLKVVNDTAIAVNQGGKRKGAVCSYLESWHLDVEEFLDLRKNTGDDRRRTHD 481 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 M+TANWIPDLFMKRV +NA WTLFSPDE DLHDL G +F+ YE YE+ AD G++++FR Sbjct: 482 MHTANWIPDLFMKRVRENADWTLFSPDETPDLHDLCGSKFQARYEEYEKLADEGKMRLFR 541 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 ++ A LWRKMLT LFETGHPWIT+KDP N+RSPQ HVGVVHSSNLCTEI LN+S +E A Sbjct: 542 RLPANELWRKMLTRLFETGHPWITWKDPSNVRSPQDHVGVVHSSNLCTEILLNTSKDEIA 601 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNLGSINL+AH N + D +KL T+ TA R+LDNVIDIN + +AK SN HR +G+ Sbjct: 602 VCNLGSINLVAHIRNGELDLEKLQETVTTAARMLDNVIDINYYPTGEAKTSNARHRPVGM 661 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 GLMGFQ AL L + YAS EAVE AD SME IS+ AI AS +LA ERG Y ++ GS WD+ Sbjct: 662 GLMGFQDALSSLGVSYASQEAVEFADRSMEAISYFAILASSQLAAERGTYETYAGSKWDR 721 Query: 719 GVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G+ PIDS+ +L + R + ++R+S L W ++ V+ GMRNSN MAIAPTATI+ I G Sbjct: 722 GILPIDSLDILEQERGLPIEVDRSSTLDWQVVRDSVREHGMRNSNVMAIAPTATISTIVG 781 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 VSQSI+P+Y+NL+VKSN+SG+F +N +V +LK LWD M+ +KY+DG + I+R+ Sbjct: 782 VSQSIEPTYKNLFVKSNLSGEFPQLNIRMVQDLKAEGLWDSDMVEAIKYYDGELTEIDRV 841 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 PD LK + TAFE+D WLIE +RRQKWID QSLNLY+ +PSG+KL +Y AW +GL Sbjct: 842 PDHLKLRYLTAFEVDSKWLIECGARRQKWIDMGQSLNLYMAQPSGRKLHDMYMLAWNVGL 901 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---------------SLGIPS 942 KTTYYLR+ SAT VEKST+ + + + ++S P Sbjct: 902 KTTYYLRTLSATQVEKSTIDVNRFGIQPRWMKNASASADIRVDRGDAAEILDELPPEQPK 961 Query: 943 SCTSDTECEVCQ 954 +C D +CE CQ Sbjct: 962 ACNLDGDCESCQ 973 >gi|241589541|ref|YP_002979566.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12D] gi|240868253|gb|ACS65912.1| ribonucleoside-diphosphate reductase, alpha subunit [Ralstonia pickettii 12D] Length = 949 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 517/954 (54%), Positives = 661/954 (69%), Gaps = 39/954 (4%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMA------VEGKGASRSIRVQDIIKNLTEQTVT 81 VI+RNG FD SKI+ A+ KAF+ S S ++ ++ LT+ Sbjct: 8 AYMVIRRNGETVPFDASKIASALAKAFLYDAHGNLYRPGVVSLSAAQRERVEQLTQAVCD 67 Query: 82 RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141 L + +S+ HIE +QDQVE +LM++G H++ R YVLYRE S RA + I Sbjct: 68 ALGRRGESSA-FHIEALQDQVELALMRAGEHEVARGYVLYREMASQKRAPAPVAGRYDHI 126 Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 M +G + F+ IVE +GL+ VS+ + E +N+Y+ E ++E A Sbjct: 127 K---SYRMRNGGVAPFDPSFWIAIVESVVAGLESVSAADLFEEAVRNLYNNAKEEEIENA 183 Query: 202 LIFSSRTLIEKEPNYAKVTARF-LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI ++RT IE EP Y K AR L +L +V + T E+ Y E F R I Sbjct: 184 LILAARTKIEMEPAYTKAAARLVLALQLGHDVFG------KAITFDELASSYGEAFARGI 237 Query: 261 EEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 +E V A LL + M FDL LAN ++ ERD ++YLG+Q LYDRY LHI+G RIE+PQA Sbjct: 238 KEAVSAELLADDMTRGFDLQRLANAIRPERDCLWDYLGMQTLYDRYLLHIDGKRIELPQA 297 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F MRVAMGLA E E+E RA+EFY +LS+F +M STPTLFN+G+ QLSSC+LTT+ DD Sbjct: 298 FLMRVAMGLARNEVEREVRAIEFYEVLSTFDYMASTPTLFNTGSLRSQLSSCYLTTISDD 357 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ L+ENA+L+K++GGLGNDWT VR LG++I GTNGKSQG++PFLKV NDTAVAVN Sbjct: 358 LEGIYDGLKENALLSKFAGGLGNDWTRVRALGSYIKGTNGKSQGIVPFLKVVNDTAVAVN 417 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + A W Sbjct: 418 QGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVHEGADW 477 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLFSP++V DLHDLYG +FE Y++YE AD G +K F++ AV LWRKML +LFETGHP Sbjct: 478 TLFSPNDVPDLHDLYGSKFEERYKHYEALADAGTLKHFKRAPAVDLWRKMLGLLFETGHP 537 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--- 616 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLN++ E AVCNLGS+NL+AH Sbjct: 538 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLVKQADGSV 597 Query: 617 --DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D+ KL TIR A+R+LDNVID+N + + KA+ SN HR +GLG+MG+Q AL++L IP+ Sbjct: 598 ALDHVKLRRTIRIAMRMLDNVIDMNFYAVSKARTSNMRHRPVGLGMMGYQDALYVLGIPF 657 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR- 733 S AVE +D SME I ++A AS +LA ERG Y S+ GSLW +G+ P DSI LL + R Sbjct: 658 GSEAAVEFSDRSMEAICYYAYEASSDLAVERGVYPSYNGSLWSKGILPFDSIDLLVQERG 717 Query: 734 -DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 L ++R+S + WD L++++ GMRNSNC+AIAPTATI+NI GVS S +P +QNLYVK Sbjct: 718 EGYLDVDRSSSMDWDALREKIGRQGMRNSNCVAIAPTATISNIVGVSASNEPQFQNLYVK 777 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 SN+SG+FT+VN +LV +LK+ +WDE M+SDLK++DGS+ I+R+P D+K +ATAFEI+ Sbjct: 778 SNLSGEFTLVNEYLVADLKKLGIWDEVMLSDLKFYDGSVQKIDRVPADIKARYATAFEIE 837 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 P W +E+ +RRQKWIDQAQSLN+Y+ SGKKLD +Y+ AWL GLKTTYYLR+ +ATSVE Sbjct: 838 PSWSVEAGARRQKWIDQAQSLNIYMAGASGKKLDEVYKLAWLRGLKTTYYLRTIAATSVE 897 Query: 913 KSTLKGVDGKLNAVPVTDP------NSSTHSLGIPSSCTSDT------ECEVCQ 954 KST+ G LNAV + S+ C C+ CQ Sbjct: 898 KSTV--PLGTLNAVAPSSQMATQQTTQSSEPDVEGRVCMFRPGDPDFEGCQACQ 949 >gi|149173740|ref|ZP_01852369.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces maris DSM 8797] gi|148847270|gb|EDL61604.1| ribonucleotide-diphosphate reductase alpha subunit [Planctomyces maris DSM 8797] Length = 949 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 501/945 (53%), Positives = 644/945 (68%), Gaps = 26/945 (2%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 V KR G FD S I RAI AF A ++ I + E + Sbjct: 10 VTKRGGRTAPFDASLIGRAISNAFRAELNLADNQPLDDEIRMEIPEMVESVANEIASAAS 69 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ------SHSKSDAPIA 142 + V +E IQD VE LM+ GH++I R Y++YR ER+ +RA + S+S Sbjct: 70 TDAGVEVEKIQDVVEMMLMRRGHYRIARRYIVYRAERAKLRALRGSSDLVEESESIKSTT 129 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETA 201 P+ +++ DGT + F+ R+ + +AC GL+ D S++ +L E ++++DG+S +L A Sbjct: 130 PRFHVVLTDGTKVPFDEARILARLSDACRGLEGDCSAEALLEEVMRSIFDGISVEELYRA 189 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 +I ++RT IE++P Y V +R +L+ + + L + +E+ LY + F +++E Sbjct: 190 MILAARTRIERDPAYDTVASRLMLKIIYNDALGN-----APSDVNELNQLYVDRFPKFLE 244 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +G+ A+ L + FDL +A L+ +RD F+YLGLQ ++DRY LHI G RIE PQ F+ Sbjct: 245 DGIAAKRLTPDLHKFDLNRIALALEPKRDHLFQYLGLQAIFDRYLLHIGGRRIETPQYFW 304 Query: 322 MRVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 MRV+MGLA++E RA+EFYN+LSSF F +TPTLFNS T HPQLSSC+L+TV DDL Sbjct: 305 MRVSMGLAIQEEGDATGRAIEFYNILSSFRFTSATPTLFNSATLHPQLSSCYLSTVNDDL 364 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 IF + +NA L+K++GGLGNDWT +R +HI GTNG+SQGVIPFLKV NDTAVAVNQ Sbjct: 365 DHIFKCVADNAKLSKWAGGLGNDWTQIRATNSHISGTNGQSQGVIPFLKVVNDTAVAVNQ 424 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKRKGAVC+YLETWH+DVEEFLDLRKNTGDDRRRTHDM+TANWIPDLFM+RV ++A WT Sbjct: 425 GGKRKGAVCSYLETWHMDVEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMRRVREDAEWT 484 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP++V DLHDLYG +FE Y YER + GEIK+FR+ISAV LWRKMLT LFETGHPW Sbjct: 485 LFSPNDVPDLHDLYGHDFEKRYAEYERMTETGEIKLFRRISAVELWRKMLTRLFETGHPW 544 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 IT+KD N+RSPQ HVGVVHSSNLCTEI LN+S +ETAVCNLGS+NL H + Q D Sbjct: 545 ITWKDASNLRSPQDHVGVVHSSNLCTEILLNTSRDETAVCNLGSVNLKLHIVDGQLDLGM 604 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L T+RTA+R+LDNVIDIN + +A+ SN HR +GLG+MGFQ AL I YAS +AV Sbjct: 605 LEETVRTAMRMLDNVIDINYYPTPEARNSNTKHRPVGLGIMGFQDALLAQGISYASMQAV 664 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMN 739 E AD SME IS+ AI AS ELA ERG Y S+ GS WD+G+ PID++ L + R + ++ Sbjct: 665 EFADASMEAISYFAILASSELAGERGRYGSYTGSKWDRGLLPIDTLDLYEKERGIPVEVD 724 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 R +RL W ++ + GMRNSN MAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+F Sbjct: 725 RQARLDWQVVRNSIAANGMRNSNVMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEF 784 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 T VN LV++LK DLWD M+ LKY+DGS+ IERIPD+LK + TAFE++P W IE Sbjct: 785 TQVNRQLVDDLKAVDLWDADMLESLKYYDGSVQEIERIPDELKARYLTAFEVEPKWTIEC 844 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+ RQKWID QSLNLYL EPSGKKL +Y AW GLKTTYYLR+ +AT VEKST+ Sbjct: 845 AAHRQKWIDMGQSLNLYLAEPSGKKLHEMYMLAWERGLKTTYYLRTLAATQVEKSTVDVN 904 Query: 920 D----------GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + D + + SC D +CE CQ Sbjct: 905 KFGIQPRWMKNASASGDIQVDREPAATMVTPGESCNLDGDCEACQ 949 >gi|282890381|ref|ZP_06298909.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499763|gb|EFB42054.1| hypothetical protein pah_c016o113 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 921 Score = 868 bits (2243), Expect = 0.0, Method: Composition-based stats. Identities = 508/927 (54%), Positives = 652/927 (70%), Gaps = 19/927 (2%) Query: 40 SFDPSKISRAIMKAFMA--VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIED 97 SFD +I AI KAF A + G + +Q + +T ++ +L V IE Sbjct: 2 SFDGERIRLAITKAFRAELLLGADQALPEEIQKVTNGITSAVISSIL-SLTRDEPVPIEK 60 Query: 98 IQDQVECSLMQSGHHKITREYVLYREERSDVRA-AQSHSKSDAPIAPKLKIMMDDGTLIS 156 IQD VE LMQ G+H++ R Y+LYREER RA ++ ++ + L + DGT Sbjct: 61 IQDLVEKELMQEGYHQVARGYILYREERKRARAFKETAIPANEQVKSTLYVTYPDGTKSP 120 Query: 157 FNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215 N+++++ +E AC+ +++ + + ++ E K++YDG+ +L + IFS+R+ IEKEP Sbjct: 121 LNTQKMQSKMEHACADFKELCNPQELIEEMLKHLYDGVLFKELNESAIFSARSKIEKEPA 180 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 Y V AR LL+ + EV + E+ L+ +F +YI +GV A+ L + Sbjct: 181 YNYVAARLLLQDIYNEVFEQ------ECHPSEVANLHVSHFEQYIRKGVMAKRLTPELFG 234 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET-E 334 +DL LA +L RD F Y+G+Q LYDRY +H+ RIE PQ F+MRVAMGLAL E Sbjct: 235 YDLEKLAQNLDSSRDKLFTYIGVQTLYDRYLIHVKNDRIETPQYFWMRVAMGLALNEKEN 294 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 +E+RA+EFYN+LS FHF+ STPTLFNSG+ HPQLSSC+L+TV DDL IF + +NA L+ Sbjct: 295 REERAIEFYNVLSQFHFISSTPTLFNSGSLHPQLSSCYLSTVQDDLVNIFKVIADNASLS 354 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K+SGG+GNDWT +R GA IHGTNG +QGV+PFLKVANDTAVAVNQGGKRKGAVCAYLET Sbjct: 355 KWSGGIGNDWTNIRATGATIHGTNGLTQGVVPFLKVANDTAVAVNQGGKRKGAVCAYLET 414 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH+D+E+F++LRKNTGD+RRRTHDMNTANWIPDLFMKRV + + WTLF+P + DLHDLY Sbjct: 415 WHLDIEDFVELRKNTGDERRRTHDMNTANWIPDLFMKRVREQSVWTLFNPSDTPDLHDLY 474 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EFE Y YER A G+IK+F+ I A+ LWRKM+TMLFETGHPW+TFKDP NIRSPQ Sbjct: 475 GIEFEKRYCEYERLAQEGKIKLFKVIPAMDLWRKMITMLFETGHPWMTFKDPSNIRSPQS 534 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 H GVVHSSNLCTEI LN+S ETAVCNLGSINL AH + D LA TIRTA+R+LDN Sbjct: 535 HAGVVHSSNLCTEILLNTSENETAVCNLGSINLAAHIKGDFLDEQFLAKTIRTAMRMLDN 594 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VIDIN + ++A++SN HR +GLGLMGFQ AL+ I Y S EAVE AD SME IS+HA Sbjct: 595 VIDINYYPTKEARESNLRHRPVGLGLMGFQDALYHFRIAYDSQEAVEFADASMEMISYHA 654 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRV 753 I AS ELA+ERG YSS++GS W QG+ PIDSI LL R L M+RTS+ W ++K + Sbjct: 655 ILASTELAKERGVYSSYRGSKWSQGILPIDSIALLDNERKGYLHMDRTSKKDWSVVRKEI 714 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 + GMRN N MAIAPTATIA+I G+SQSI+P++ LYVKSN+SG+F V+N +LV +LK+R Sbjct: 715 QKHGMRNCNTMAIAPTATIAHISGLSQSIEPTFSLLYVKSNLSGEFAVLNEWLVKDLKER 774 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 DLW++ M+ +LKY+DGS+ IE+ P+DLK ++ TAFEI+P WLIE ASRRQKWID QSL Sbjct: 775 DLWNQDMLDELKYYDGSVQEIEQFPEDLKGLYKTAFEIEPKWLIECASRRQKWIDMGQSL 834 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 NLY++ P G+KL +Y AW GLKTTYYLRS++AT VEKSTL + + ++ Sbjct: 835 NLYVNAPDGRKLSDMYLLAWEKGLKTTYYLRSKAATQVEKSTLDINKKGIQPRWMKSRSA 894 Query: 934 S-----THSLGIPSSCTS-DTECEVCQ 954 S IP SC+ ECE CQ Sbjct: 895 SGSIRVERDSSIPKSCSLSGDECESCQ 921 >gi|297621806|ref|YP_003709943.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia chondrophila WSU 86-1044] gi|297377107|gb|ADI38937.1| ribonucleoside-diphosphate reductase alpha subunit [Waddlia chondrophila WSU 86-1044] Length = 918 Score = 860 bits (2222), Expect = 0.0, Method: Composition-based stats. Identities = 474/933 (50%), Positives = 636/933 (68%), Gaps = 27/933 (2%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII--KNLTEQTVTRLL 84 + + V KR+ +T F+P +I AI AF V + ++ + + E + ++ Sbjct: 8 QKISVRKRDKQITPFNPERIKNAISSAFRDVWNLQSYHTLDKAQQVIIGQVFEAVIEKIR 67 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 + +E IQD VE LM+ H+K+ + Y+LYRE R+ R + AP Sbjct: 68 CEKPFDTPIDVERIQDYVELILMRQEHYKVAKSYILYRENRAKARQQKEEE------APA 121 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203 +++ + +G ++++ ++L++ ++ +C + + SS+ ++ ++D +S + A I Sbjct: 122 IRVKLINGDSVAYSQEKLKLSLKRSCQDFEPLCSSEELMKAIEPQLFDRISSEQIRQAAI 181 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++++LIEKEP Y KV A LL+K+ RE+ + + F YI++G Sbjct: 182 LAAKSLIEKEPAYDKVAANILLQKIYREIESLPFSN----------------FSSYIQKG 225 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 V+A+ LH ++ FD L +++ERD F Y GLQ LYDRY + I+ E+PQ F+MR Sbjct: 226 VEAKRLHSDLLGFDHRLLEEAMEHERDRQFSYQGLQTLYDRYLIRISEQVAELPQFFWMR 285 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 V+MGLAL ET+K +AVEFY++LSSF ++ STPTLFNSGT HPQLSSC+L+TV DDL I Sbjct: 286 VSMGLALNETDKNSKAVEFYHVLSSFDYISSTPTLFNSGTCHPQLSSCYLSTVQDDLNDI 345 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 F + ++A L+K++GG+GNDWT VR AHI+GTNGKSQGVIPFLKV NDTAVAVNQGGK Sbjct: 346 FRVISDDAKLSKWAGGIGNDWTNVRATQAHINGTNGKSQGVIPFLKVVNDTAVAVNQGGK 405 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGA+C YLETWH+D+ EFLDLRKNTGDDRRRTHDM+TANWIPDLFMKRV ++ WTLFS Sbjct: 406 RKGAICCYLETWHLDLPEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVEEDGEWTLFS 465 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 PDEV DLHDLYG+ F+ YE+YER+A G+IK +R A+ LWRKML+ LFETGHPWIT+ Sbjct: 466 PDEVPDLHDLYGRAFDKRYEHYEREAKAGKIKQYRTFKAIDLWRKMLSRLFETGHPWITW 525 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623 KDP NIR Q+H GV+HSSNLCTEI L +S EETAVCNLGS+NL H + D L Sbjct: 526 KDPSNIRGNQKHAGVIHSSNLCTEILLPTSKEETAVCNLGSVNLRNHIKEGKLDVSHLEK 585 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 TI TA+R+LDNVIDIN + +A++SN HR IGLG+MGFQ AL+L+ IPY S EA+ A Sbjct: 586 TIATAIRMLDNVIDINFYPTPEARESNLRHRPIGLGMMGFQDALYLMEIPYCSQEAIAFA 645 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTS 742 D SME IS+ AI AS LA+ERG+Y SFKGS WD G+FP ++ LL E R ++ +++ S Sbjct: 646 DSSMETISYFAIKASSLLAKERGSYPSFKGSNWDLGLFPHQTMALLEEERGIKIPIDQCS 705 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L + ++ GMRNS+ +AIAPTATI+ I GVSQSI+P Y NL+ KSN+SG+FT V Sbjct: 706 SRDWKTLLEIIRQNGMRNSHVLAIAPTATISQIVGVSQSIEPQYTNLFTKSNLSGEFTSV 765 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV LK +LWD+ M+ +LKYHDGS+ I RIP ++++ TAFE+ WLI A+ Sbjct: 766 NHYLVETLKSLNLWDQEMLDELKYHDGSVQAIPRIPQEVRERFRTAFEVGAEWLIRCAAA 825 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWID QSLNLYL EPSG+KLD +YR AW +GLKTTYYLR+R+AT VEKSTL Sbjct: 826 RQKWIDMGQSLNLYLTEPSGRKLDEMYRLAWKLGLKTTYYLRTRAATQVEKSTLDINKFD 885 Query: 923 LNAVPVTDPNSSTHSLGIPSSCT-SDTECEVCQ 954 + + + ++S+ C+ D CE CQ Sbjct: 886 IQPKWMKNKSASSSIAPRQGQCSIDDPTCEACQ 918 >gi|325110862|ref|YP_004271930.1| ribonucleoside-diphosphate reductase, subunit alpha [Planctomyces brasiliensis DSM 5305] gi|324971130|gb|ADY61908.1| ribonucleoside-diphosphate reductase, alpha subunit [Planctomyces brasiliensis DSM 5305] Length = 953 Score = 856 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 496/950 (52%), Positives = 660/950 (69%), Gaps = 32/950 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ--DIIKNLTEQTVTRLLQHNK 88 V KR+G + SFD ++I RA+ AF A S+ + +I+ ++++ ++ Sbjct: 10 VRKRDGRIASFDMNRIGRAMENAFRAELNLADSQPLDEDVISVIRQISDEVGNQIAPSAS 69 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS--KSDAPIAPKLK 146 S V +E++QD VE LM+ GH+++ R Y++YR E + +RA + + P + Sbjct: 70 SRQGVDVEELQDAVEMLLMKHGHYRVARRYIVYRAEHAKLRALRGEEGFADEGPERVQTN 129 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205 + +DDGTL+ F+ R+ ++ AC GL+D+ S++ + E K++YDG++ ++ A+I + Sbjct: 130 VTLDDGTLVPFDPNRIMTKLQLACRGLEDICSAEDLHEEVLKSIYDGITTKEIYRAMILA 189 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 SR+ IE++P Y KV R +L+ + + L + + ++ +Y F YI +G+ Sbjct: 190 SRSRIERDPAYDKVAGRLMLDVIYHDALGS------APSPKKLASVYRHQFEHYIIDGIA 243 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 A L + DF+L +A+ L+ RD F+YLGLQ +YDRY +HI+G RIE PQ F+MRVA Sbjct: 244 AERLSPGLRDFNLTQIADALEPSRDALFQYLGLQTIYDRYLIHIDGRRIEAPQFFWMRVA 303 Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 MGLA+ E +KE+RA++FYN+LSSF F +TPTLFNS T HPQLSSC+L+TV DDL IF Sbjct: 304 MGLAVNEGEQKEERAIQFYNMLSSFRFTSATPTLFNSATLHPQLSSCYLSTVSDDLEHIF 363 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + +NA L+K++GGLGNDWT +R AHIHGTNG+SQGVIPFLKV NDTAVAVNQGGKR Sbjct: 364 KVISDNAKLSKWAGGLGNDWTNIRATNAHIHGTNGQSQGVIPFLKVVNDTAVAVNQGGKR 423 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDM+TANWIPDLFMKRV N WTLFSP Sbjct: 424 KGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMHTANWIPDLFMKRVEANDEWTLFSP 483 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DEV DLHDL GKEFE Y YE+ A+ GE+ + RK++AV LWRKMLT LFETGHPWIT+K Sbjct: 484 DEVPDLHDLTGKEFENRYLEYEKMAEDGEMGLTRKVNAVELWRKMLTRLFETGHPWITWK 543 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DP N+RSPQ H GVVHSSNLCTEI LN+S ETAVCNLGSINL H + + L T Sbjct: 544 DPSNVRSPQDHCGVVHSSNLCTEILLNTSPTETAVCNLGSINLKTHIVDGALNLQMLEET 603 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + TA+R+LDNVIDIN + E+A +N HR +G+GLMGFQ AL + + Y PEAVE AD Sbjct: 604 VFTAMRMLDNVIDINYYPTEEAANANKRHRPVGMGLMGFQDALLAMDLSYTCPEAVEFAD 663 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSR 743 SME IS+ AI AS +LA ERG YSS++GS WD+G+ PID++ LL E R + ++R+S Sbjct: 664 RSMEAISYFAILASSQLAAERGRYSSYEGSKWDRGLLPIDTLDLLEEARGQAIEVDRSSS 723 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD ++K V GMRNSNCMAIAPTATI+ I GVSQSI+PSY++LYVKSN+SG+FT VN Sbjct: 724 LDWDVVRKSVAENGMRNSNCMAIAPTATISTIIGVSQSIEPSYKHLYVKSNLSGEFTQVN 783 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 S LV ELK R LWD M+ LKY+DG++ +I+R+P D+K+ + TAFE+DP WL+E A+RR Sbjct: 784 SVLVTELKSRGLWDSDMLDALKYYDGTLADIDRVPADIKERYQTAFEVDPYWLVECAARR 843 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD--- 920 QKW+D QSLNLY+ P+GK+L +Y AW GLKTTYYLR+ +AT VEKST+ Sbjct: 844 QKWLDMGQSLNLYMQAPNGKRLHDMYFDAWKKGLKTTYYLRTLAATQVEKSTVDVNKFGI 903 Query: 921 ----------------GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + + N S+ + ++ +CE CQ Sbjct: 904 QPRWMKNKSNSSDIRVDRAHRDVIEETNDLPASMANATCDPNNPDCEACQ 953 >gi|237805180|ref|YP_002889334.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis B/TZ1A828/OT] gi|231273480|emb|CAX10396.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis B/TZ1A828/OT] Length = 1047 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 487/938 (51%), Positives = 627/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S Sbjct: 176 CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 AIEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A L++ + +E L +++ + ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLIDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ F+M Sbjct: 350 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D+L Sbjct: 410 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 650 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT++ FN ++ +E+A ++ + M ++ Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E P + R +EK++ +++ + LY E R + + Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227 Query: 269 LHESMMDFDLVYLAN 283 +++ + + L+ Sbjct: 228 TEKTIAEEAIEVLSK 242 >gi|296436382|gb|ADH18556.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/9768] gi|296438241|gb|ADH20402.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/11074] gi|297140742|gb|ADH97500.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/9301] Length = 1047 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 488/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S Sbjct: 176 CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L +++ + ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ F+M Sbjct: 350 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D+L Sbjct: 410 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 650 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 890 IPNVYLIEKLKKLGVWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT++ FN ++ +E+A ++ + M ++ Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E P + R +EK++ +++ + LY E R + + Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227 Query: 269 LHESMMDFDLVYLAN 283 +++ + + L+ Sbjct: 228 TEKTIAEEAVEVLSK 242 >gi|15605562|ref|NP_220348.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis D/UW-3/CX] gi|237803259|ref|YP_002888453.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis B/Jali20/OT] gi|255311667|ref|ZP_05354237.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 6276] gi|255317968|ref|ZP_05359214.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 6276s] gi|7388066|sp|O84834|RIR1_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|6578115|gb|AAC68424.2| Ribonucleoside Reductase, Large Chain [Chlamydia trachomatis D/UW-3/CX] gi|231274493|emb|CAX11289.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis B/Jali20/OT] gi|296437313|gb|ADH19483.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis G/11222] Length = 1047 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 488/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S Sbjct: 176 CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L +++ + ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ F+M Sbjct: 350 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D+L Sbjct: 410 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 650 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT++ FN ++ +E+A ++ + M ++ Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E P + R +EK++ +++ + LY E R + + Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227 Query: 269 LHESMMDFDLVYLAN 283 +++ + + L+ Sbjct: 228 TEKTIAEEAVEVLSK 242 >gi|297748956|gb|ADI51502.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis D-EC] gi|297749836|gb|ADI52514.1| Ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis D-LC] Length = 1053 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 488/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 122 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 181 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S Sbjct: 182 CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 241 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 242 AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 301 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L +++ + ++F RYI E Sbjct: 302 IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 355 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ F+M Sbjct: 356 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 415 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D+L Sbjct: 416 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 475 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 476 IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 535 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q WTLF Sbjct: 536 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 595 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGHPW+T Sbjct: 596 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 655 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 656 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 715 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 716 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 775 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 776 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 835 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 836 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 895 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 896 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 955 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 956 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1015 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1016 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1053 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 17 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 76 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 77 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 127 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT++ FN ++ +E+A ++ + M ++ Sbjct: 128 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 177 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E P + R +EK++ +++ + LY E R + + Sbjct: 178 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 233 Query: 269 LHESMMDFDLVYLAN 283 +++ + + L+ Sbjct: 234 TEKTIAEEAVEVLSK 248 >gi|76789572|ref|YP_328658.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis A/HAR-13] gi|76168102|gb|AAX51110.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis A/HAR-13] Length = 1047 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 487/938 (51%), Positives = 627/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S Sbjct: 176 CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A L++ + +E L +++ + ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLIDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ F+M Sbjct: 350 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D+L Sbjct: 410 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 650 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT++ FN ++ +E+A ++ + M ++ Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E P + R +EK++ +++ + LY E R + + Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227 Query: 269 LHESMMDFDLVYLAN 283 +++ + + L+ Sbjct: 228 TEKTIAEEAVEVLSK 242 >gi|255507449|ref|ZP_05383088.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis D(s)2923] gi|289525873|emb|CBJ15355.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis Sweden2] gi|296435458|gb|ADH17636.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis E/150] gi|296439175|gb|ADH21328.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis E/11023] Length = 1047 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 488/938 (52%), Positives = 626/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S Sbjct: 176 CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L +++ + ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H R+E PQ F+M Sbjct: 350 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D+L Sbjct: 410 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT VR GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 650 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT++ FN ++ +E+A ++ + M ++ Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E P + R +EK++ +++ + LY E R + + Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227 Query: 269 LHESMMDFDLVYLAN 283 +++ + + L+ Sbjct: 228 TEKTIAEEAVEVLSK 242 >gi|255349231|ref|ZP_05381238.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 70] gi|255503768|ref|ZP_05382158.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 70s] Length = 1047 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 487/938 (51%), Positives = 626/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ + + Y+LYRE R+ VR + S Sbjct: 176 CPQQDRRIDIEKIQDIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 AVEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L +++ + ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H R+E PQ F+M Sbjct: 350 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEDCRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV D+L Sbjct: 410 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT VR GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVIADNAMLSKWAGGIGNDWTAVRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+N A+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 650 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EA+E Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAIEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 100/255 (39%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT++ FN ++ +E+A ++ + M ++ Sbjct: 122 RRCGTVVHFNPMKISAALEKAFR----------ATDKTEGMTPSSVREEINALTQNIVAE 171 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E P + R +EK++ +++ + LY E R + + Sbjct: 172 IEECCPQQDR---RIDIEKIQ-DIVEQQLMVVGHYAVAKNYILYREARARVRDNREEDGS 227 Query: 269 LHESMMDFDLVYLAN 283 +++ + + L+ Sbjct: 228 TEKTIAEEAVEVLSK 242 >gi|126640805|ref|YP_001083789.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii ATCC 17978] Length = 885 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 504/900 (56%), Positives = 649/900 (72%), Gaps = 40/900 (4%) Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 + + S +HIE+IQDQVE +LM++G HK+ R YV+YR++R+ R + + Sbjct: 2 VLNTFTRRLPSGGTIHIEEIQDQVELALMRTGEHKVARAYVIYRDQRASARKDTNSNH-- 59 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 P L++ +G L + L+ V A GL+ + + ++ ET KN+Y+G+ ESD+ Sbjct: 60 ---HPTLQVTDANGQLQPLDLSALQATVNRAAEGLEGIDVQAIIDETVKNLYNGVKESDI 116 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 T ++ ++RT IE+EPNY VTAR L ++L L + A + Sbjct: 117 ATTMMMATRTRIEQEPNYTYVTARLLRDELVSTGLAFLGLPADTAEN--------NALEA 168 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 ++++GV+ LL ++ FDL LA ++ ER F YLGLQ L+DRYF+H NG R E+PQ Sbjct: 169 FLKKGVELDLLSPDLLKFDLEKLAAAIQPERSNQFTYLGLQTLFDRYFIHSNGVRFELPQ 228 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 FFMRV+MGLAL E +KE+RA+EFYNLLSSF +M STPTLFNSGT PQLSSC+LTT+ D Sbjct: 229 LFFMRVSMGLALNEQDKEERAIEFYNLLSSFDYMASTPTLFNSGTLRPQLSSCYLTTIGD 288 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DLY I+GA+++NAML+K++GGLGNDWTPVR L ++I GTNGKSQGV+PFLKVANDTAVAV Sbjct: 289 DLYDIYGAMRDNAMLSKWAGGLGNDWTPVRALNSYIKGTNGKSQGVVPFLKVANDTAVAV 348 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFM+RV ++ Sbjct: 349 NQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMQRVFEDGE 408 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 WTLF+P E DLHDL G EF Y YE A + + +K+ A LWRKML+MLFETGH Sbjct: 409 WTLFTPSETPDLHDLTGAEFAERYAYYESVAKEQNM-LHKKVRAKDLWRKMLSMLFETGH 467 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 PWITFKD CN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLGSINL+ H D Sbjct: 468 PWITFKDVCNLRSPQQHVGVVHSSNLCTEITLNTNQDEIAVCNLGSINLVQHVKGGVLDR 527 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KLA T++TAVR+LDNVIDIN + + +AK SN HR +G+G+MGFQ AL+ + + Y S E Sbjct: 528 EKLARTVKTAVRMLDNVIDINYYAVPQAKNSNLKHRPVGMGIMGFQDALYEMGMAYGSDE 587 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--L 736 AV ADESME IS++AI S +LA ERGAYS+FKGSLWDQG+ PIDS+ ++A+ R E Sbjct: 588 AVNFADESMEVISYYAIQTSSDLAVERGAYSTFKGSLWDQGILPIDSLEIVAKSRPERMF 647 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++RT RL WD L+ +V+ GMRNSN MAIAPTATI+NICGVSQSI+P++QNLYVKSN+S Sbjct: 648 EVDRTQRLDWDSLRAKVQKDGMRNSNVMAIAPTATISNICGVSQSIEPTFQNLYVKSNLS 707 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+FTV+N +LV LK+R LWD M++DLK+ +GS+ I RIP++LK I ATAFE++P W+ Sbjct: 708 GEFTVINPYLVRALKERGLWDTVMVNDLKHFEGSVQKIARIPEELKAIFATAFEVEPRWI 767 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 +++ASRRQKWIDQAQSLNLY+ +GKKLD Y+ AWL GLKTTYYLR+ ATS EKST+ Sbjct: 768 VDAASRRQKWIDQAQSLNLYISGANGKKLDITYKMAWLRGLKTTYYLRALGATSAEKSTI 827 Query: 917 KGVDGKLNAVP---------------------VTDPNSSTHSLGIPSSCTSD-TECEVCQ 954 G LNAV + + T + +P +C+ D +CE CQ Sbjct: 828 N--TGALNAVKPATVEAAAPAAAPVVEAKKPEAVEEDGFTQAAPVPMACSIDNPDCEACQ 885 >gi|166154171|ref|YP_001654289.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis 434/Bu] gi|166155046|ref|YP_001653301.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335415|ref|ZP_07223659.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia trachomatis L2tet1] gi|165930159|emb|CAP03643.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis 434/Bu] gi|165931034|emb|CAP06597.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1047 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 490/938 (52%), Positives = 627/938 (66%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + V++R G V F+P KIS A+ KAF A + V++ I LT+ V + + Sbjct: 116 QSLSVVRRCGTVVHFNPMKISAALEKAFRATDKTEGMTPSSVREEINALTQNIVAEIEEC 175 Query: 87 NKSA-LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP--IAP 143 + IE IQD VE LM GH+ I + Y+LYRE R+ VR + S Sbjct: 176 CSQQDRRIDIEKIQDIVEQQLMVVGHYAIAKNYILYREARARVRDNREEDGSTEKTIAEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 +++ DG+ + +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 AFEVLSKDGSTYTMTHSQLLAHLARACSRFPETTDAALLTDMAFANFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L +++ + ++F RYI E Sbjct: 296 IMAARANIEKEPDYALVAAELLLDVVYKEALGKSK------YAEDLEQAHRDHFKRYIAE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LA+ + RD F Y+G+Q LYDRYF H G R+E PQ F+M Sbjct: 350 GDTYRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 410 RVAMGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNG+SQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGD+RRR HD+NTA+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNTASWIPDLFFKRLQQKGTWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++F+K+ A LWRKML+M+FETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMVFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGSINL+ H + D +KL+ Sbjct: 650 FKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R E L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +SR W+ ++ VK GMR+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IERIPD LK I TAFEI+P W+IE A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CE CQ Sbjct: 1010 RGIQPRWMKNKSASAGIIVERAKKAPVCSLEEGCEACQ 1047 Score = 118 bits (295), Expect = 6e-24, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 11/141 (7%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF ++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLESSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+Y++YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYVNGLQDVARDYIVYRDDRKAHRKKSWQ---------SLSVV 121 Query: 149 MDDGTLISFNSKRLEMIVEEA 169 GT++ FN ++ +E+A Sbjct: 122 RRCGTVVHFNPMKISAALEKA 142 >gi|15834834|ref|NP_296593.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum Nigg] gi|270285000|ref|ZP_06194394.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum Nigg] gi|270289023|ref|ZP_06195325.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum Weiss] gi|301336398|ref|ZP_07224600.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydia muridarum MopnTet14] gi|14195148|sp|Q9PL93|RIR1_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|7190252|gb|AAF39086.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydia muridarum Nigg] Length = 1047 Score = 848 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 488/938 (52%), Positives = 631/938 (67%), Gaps = 16/938 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + + VI+R G F+P KIS A+ KAF A + V++ + LT++ V + + Sbjct: 116 QSLSVIRRCGTTVHFNPMKISAALEKAFRATDRIEGMTPDFVREEVNALTQKIVAEIEER 175 Query: 87 NKSALI-VHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ--SHSKSDAPIAP 143 + IE IQD VE LM GH+ + Y+LYRE R+ VR + +AP Sbjct: 176 CSQQDSRIDIEQIQDIVEQQLMVVGHYATAKNYILYREARARVRDNRVEDQIVEEAPSEE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 +++ DG+ +L + ACS + + ++ + N Y G+ ES++ A Sbjct: 236 TFEVLSKDGSTYMITHSQLLARLARACSRFPETTDAALLTDMAFSNFYSGIKESEVVLAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A LL+ + +E L +++ +Y ++F RYI E Sbjct: 296 IMAARANIEKEPDYAFVAAELLLDVVYKEALDRSRGD------EDLEQVYRDHFKRYIME 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G RL E FDL LAN + RD F Y+G+Q LYDRYF H +G R+E PQ F+M Sbjct: 350 GDSYRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWM 409 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVAMGLALKE +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 410 RVAMGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLVN 469 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + +NAML+K++GG+GNDWT +R GA I GTNGKSQGVIPF+KV NDTAVAVNQGG Sbjct: 470 IYKVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG 529 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLE WH+D E+FL+LRKNTGDDRRR HD+NTA+WIPDLF KR+ Q WTLF Sbjct: 530 KRKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLF 589 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SPD+V LHD YG+EFE YE YER+ D GEI++++K+ A LWRKML+MLFETGHPW+T Sbjct: 590 SPDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMT 649 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDP NIRS Q H GVV SNLCTEI LN S ETAVCNLGS+NL+ H ++ D +KL+ Sbjct: 650 FKDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGLDEEKLS 709 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI AVR+LDNVIDIN + ++AK++N HRAIGLG+MGFQ AL+ L I YAS EAVE Sbjct: 710 ETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVEF 769 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNR 740 AD S E IS++AI AS LA+ERG YSS+KGS WD+G+ PID+I LLA R + L M+ Sbjct: 770 ADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMDT 829 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W+ ++ ++ GMRN MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT Sbjct: 830 SVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFT 889 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N +L+ +LK+ +WD M+ DLKY DGS+ IER+PD +K I TAFEI+P W++E A Sbjct: 890 IPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECA 949 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK--- 917 SRRQKWID QSLNLYL +P GKKL +Y AW GLKTTYYLRS SAT+VEKS + Sbjct: 950 SRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKTTYYLRSSSATTVEKSFVDINK 1009 Query: 918 -GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + C+ + CEVCQ Sbjct: 1010 RGIQPRWMKNKSASAGIVVERASKTPVCSLEEGCEVCQ 1047 Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 105/255 (41%), Gaps = 25/255 (9%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--SRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++KRNG FD ++I +A+ AF +++ I+++T Q V ++Q Sbjct: 11 IVKRNGMFVPFDRNRIFQALEAAFRDTRRIDDHMPLPEDLENSIRSITHQVVKEVVQKIT 70 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E IQD VE L +G + R+YV+YR++R R L ++ Sbjct: 71 DGQVVTVERIQDMVESQLYINGLQDVARDYVVYRDDRKAHREKSWQ---------SLSVI 121 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 GT + FN ++ +E+A ++ + M ++ Sbjct: 122 RRCGTTVHFNPMKISAALEKAFR----------ATDRIEGMTPDFVREEVNALTQKIVAE 171 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + E+ ++ +R +E+++ V + AT + LY E R + V+ ++ Sbjct: 172 IEERC---SQQDSRIDIEQIQDIVEQQLMVVGHYAT-AKNYILYREARARVRDNRVEDQI 227 Query: 269 LHESMMDFDLVYLAN 283 + E+ + L+ Sbjct: 228 VEEAPSEETFEVLSK 242 >gi|29840534|ref|NP_829640.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila caviae GPIC] gi|29834883|gb|AAP05518.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila caviae GPIC] Length = 1044 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 474/932 (50%), Positives = 623/932 (66%), Gaps = 15/932 (1%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 V +R+G F+P KIS A+ KAF A + + I +LT + V +L Sbjct: 120 VRRRDGNAVKFNPMKISAALEKAFRATQKNTDTPFQETLAEINDLTNKIVEEILVVCSQE 179 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 V IE IQD VE LM GH+ + + Y+LYRE RS +R ++ + + I ++ + Sbjct: 180 KTVDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRESKENVATQESIEEVYDVVRE 239 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG+ N +L AC + + + + S + N Y G+ E+++ A I ++R Sbjct: 240 DGSTYQINKAQLTDKFIWACQRFPETTNPQTLASMAFANFYSGIKEAEIVKACIMAARAN 299 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 IEKEP+YA V A L + + +E + + AT ++ + F YI G + L Sbjct: 300 IEKEPDYAYVAAELLTDVVYQETMG------KSATDSDLAEAQKQCFKNYILNG-EEYRL 352 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 + + ++DL LA L RD F Y+G+Q LYDRYF G R+E Q F+MR++MGLA Sbjct: 353 NPRLKEYDLDALAEALDISRDRQFSYMGVQNLYDRYFNQHEGRRLETAQIFWMRISMGLA 412 Query: 330 LKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 L E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL I+ + Sbjct: 413 LNEGEDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYKVIS 472 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GG+GNDWT VR +G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKGA+ Sbjct: 473 DNAMLSKWAGGIGNDWTGVRAIGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKGAM 532 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WTLFSPD+V Sbjct: 533 CVYLEIWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLDQKGTWTLFSPDDVP 592 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 LH+ YG EF+ YE YER+ D GEIK+++KI A LWRKML+ML+ETGHPW+TFKDP N Sbjct: 593 GLHEAYGFEFDKLYEEYERKIDNGEIKLYKKIPAEDLWRKMLSMLYETGHPWLTFKDPSN 652 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 IR Q H GVV SNLCTEI LN S ETAVCNLGS+NL+ H N + KLA TI A Sbjct: 653 IRGAQDHAGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLAETISIA 712 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDN+ID+N + +A +N +HRA+GLG MGFQ AL+ L+I YAS EAVE AD+S E Sbjct: 713 IRILDNIIDLNFYPTPEAANANLSHRAVGLGQMGFQDALYKLNISYASQEAVEFADKSAE 772 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSRLPW 746 I+++AI +S LA+ERG YSS+KGS WD+G P+D++ LL E R E + M+ + R W Sbjct: 773 LIAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTVELLKEYRGEENVLMDTSCRKDW 832 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +++ +K GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N +L Sbjct: 833 TPVREAIKAYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYL 892 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + +LK+ +WD M+ DLKY DGS+ IERIPDDLKKI TAFEI+P WLIE ASRRQKW Sbjct: 893 IEQLKKLGIWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRRQKW 952 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GVDGK 922 ID QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS G+ + Sbjct: 953 IDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFTDVNKRGIQPR 1012 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + C+ + CE CQ Sbjct: 1013 WMKNKSASTSIVVERTKSTPVCSLEEGCESCQ 1044 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 11/147 (7%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82 K K ++KRNG F+ +IS+A+ AF + +++ I ++T + V Sbjct: 5 KEKNYTIVKRNGMFVPFNQDRISQALEAAFRDTRSLENNSPLPEDLENSISDITHRVVNE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 ++Q + +V +E IQD VE L +G + R+Y++YR++ + R H Sbjct: 65 VMQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIVYRDQHKEQREGSWHCVL----- 119 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEA 169 + DG + FN ++ +E+A Sbjct: 120 ----VRRRDGNAVKFNPMKISAALEKA 142 >gi|329943119|ref|ZP_08291893.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila psittaci Cal10] gi|332287702|ref|YP_004422603.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila psittaci 6BC] gi|313848276|emb|CBY17277.1| putative ribonucleotide reductase large subunit [Chlamydophila psittaci RD1] gi|325507258|gb|ADZ18896.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila psittaci 6BC] gi|328814666|gb|EGF84656.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila psittaci Cal10] gi|328914954|gb|AEB55787.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila psittaci 6BC] Length = 1045 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 479/935 (51%), Positives = 627/935 (67%), Gaps = 16/935 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 V VI+R+G F+P KIS A+ KAF A + + I LT + V +L Sbjct: 118 VSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEINGLTNKIVEEILGVCS 177 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS-KSDAPIAPKLKI 147 + IE IQD VE LM GH+ + + Y+LYRE RS +R + P+ + Sbjct: 178 PEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDPVEEVYDV 237 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSS 206 + DGT S N +L AC + ++ + N Y G+ ES++ A I ++ Sbjct: 238 VKSDGTTYSINKSQLIDKFIWACQRFPETTDPHVLADMAFANFYSGIKESEIALACIMAA 297 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 R IEKEP+YA V A L++ + +E + + AT ++ + F YI G + Sbjct: 298 RANIEKEPDYAYVAAELLMDVVYQETMG------KTATDSDLAEAQKQCFKNYILNG-ET 350 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 L+ + ++DL LA L RD F Y+G+Q LYDRYF G R+E Q F+MRV+M Sbjct: 351 YRLNPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSM 410 Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 GLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL I+ Sbjct: 411 GLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLAHIYK 470 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + +NAML+K++GG+GNDWT VR G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRK Sbjct: 471 VISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRK 530 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WTLFSPD Sbjct: 531 GATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPD 590 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 +V LH+ YG EF+ YE YE + D GEIK+++KI A LWRKML+ML+ETGHPW+TFKD Sbjct: 591 DVPGLHEAYGIEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKD 650 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 P NIR+ Q HVGVV SNLCTEI LN S ETAVCNLGS+NL+ H N + KL TI Sbjct: 651 PSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLGETI 710 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A+R+LDNVID+N + ++A +N +HRA+GLG+MGFQ AL+ L+I YASPEAVE AD+ Sbjct: 711 SIAIRILDNVIDLNFYPTQEAANANLSHRAVGLGIMGFQDALYKLNISYASPEAVEFADK 770 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743 S E ++++AI +S LA+ERG YSS+KGS WD+G P+D+I LL E R E + M+ + R Sbjct: 771 SSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEQNVLMDTSCR 830 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W+ +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N Sbjct: 831 KDWNPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPN 890 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L+N+LK+ +WD+ M+ DLKY DGS+ IERIPDDLKKI TAFEI+P WLIE ASRR Sbjct: 891 VYLINKLKELGIWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRR 950 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GV 919 QKW+D QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS + G+ Sbjct: 951 QKWVDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDINKRGI 1010 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + C+ + CE CQ Sbjct: 1011 QPRWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 96/237 (40%), Gaps = 27/237 (11%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82 K K ++KRNG F+ +I +A+ AF + +++ I ++T + V Sbjct: 5 KEKHYTIVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 +Q + +V +E IQD VE L +G + R+Y++YR++ + R Sbjct: 65 AVQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDQHKEQRE---------GSW 115 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGL------ 193 + ++ DG+ + FN ++ +E A + DVS + +LSE + + + Sbjct: 116 HCVSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-NGLTNKIVEEILG 174 Query: 194 ---SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 E ++ +I + V L RE + + + Q+ + Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKN---YILYREARSRIRENKQQIDAQK 228 >gi|89898044|ref|YP_515154.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila felis Fe/C-56] gi|89331416|dbj|BAE81009.1| ribonucleoside-diphosphate reductase alpha chain [Chlamydophila felis Fe/C-56] Length = 1045 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 486/940 (51%), Positives = 625/940 (66%), Gaps = 16/940 (1%) Query: 24 EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 V V++R+G + F+P KIS A+ KAF A + I NLT + V Sbjct: 113 GSWHSVSVMRRDGNLVRFNPMKISAALEKAFRATLKITDVLLQEILSEINNLTNKIVEET 172 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP 143 L + IE IQD VE LM +GH+ + + Y+LYRE RS +R + I Sbjct: 173 LAKCSREQTIDIEAIQDIVETQLMIAGHYDVAKNYILYREARSRIREHKQEIAVQEEIVE 232 Query: 144 KLK-IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETA 201 ++ ++ DGT N +L AC + + + N Y G+ ES++ A Sbjct: 233 EVYDVVKSDGTTYQINKAQLTEKFVWACRRFPKTTNPHTLADMAFANFYSGIKESEIVLA 292 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++R IEKEP+YA V A LL+ + +E + + ++ + +YF +YI Sbjct: 293 CIMAARANIEKEPDYAYVAAELLLDVVCQEAIG------KSIMDADLVEAHKQYFKQYIL 346 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +G L+ + ++DL LA L RD F Y+G+Q LYDRY G R+E Q F+ Sbjct: 347 DG-DQYRLNPRLKEYDLDALAEALDISRDHQFSYMGVQTLYDRYLNQYEGRRLETTQIFW 405 Query: 322 MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 MRV+MGLAL E +K A+ FYNLLSSF + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 406 MRVSMGLALNEGEDKTSWAITFYNLLSSFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDL 465 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I+ + +NAML+K++GG+GNDWT VR G+ I GTNGKS GVIPF+KVANDTAVAVNQ Sbjct: 466 AHIYKVISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSHGVIPFIKVANDTAVAVNQ 525 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKRKGA C YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WT Sbjct: 526 GGKRKGATCVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQKGTWT 585 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSPD+V LH+ YG EF+ YE YER+ D GEIK+++KI A LWRKML+ML+ETGHPW Sbjct: 586 LFSPDDVPGLHEAYGFEFDKLYEEYERKVDTGEIKLYKKIPAEDLWRKMLSMLYETGHPW 645 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 ITFKDP NIRS Q H GVV SNLCTEI LNSS ETAVCNLGS+NL+ H N D + Sbjct: 646 ITFKDPSNIRSAQDHAGVVRCSNLCTEILLNSSESETAVCNLGSVNLVEHIKNGDIDEEM 705 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L TI A+R+LDNVIDIN + ++A +N THRA+GLG+MGFQ AL+ L+I YASPEAV Sbjct: 706 LGETISIAIRILDNVIDINFYPTQEAANANLTHRAVGLGMMGFQDALYKLNISYASPEAV 765 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAM 738 E AD+S E I+++A+ +S LA+ERG YSS+KGS WD+G PID+I LL E R E L M Sbjct: 766 EFADKSSELIAYYALLSSSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEDKLLM 825 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + R W +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+ Sbjct: 826 DTSCRKDWAPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGE 885 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FT+ N +L+ +LKQ LWD M+ DLKY DGS+ IERIPDDLKKI TAFEI+P WLIE Sbjct: 886 FTIPNVYLIEKLKQLGLWDADMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIE 945 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK- 917 ASRRQKW+D QS+NLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS + Sbjct: 946 CASRRQKWLDMGQSVNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSLAATSVEKSFIDI 1005 Query: 918 ---GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + + C+ + CE CQ Sbjct: 1006 NKRGIQPRWMKNKSASTSIVVERTRETPVCSLEEGCESCQ 1045 Score = 127 bits (319), Expect = 8e-27, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 19/193 (9%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82 K + ++KRNG F+ +I +A+ AF + ++ I ++T Q V Sbjct: 5 KEQHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEDTSPLPKDLEKSISSITRQVVNE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 ++Q + +V +E IQD VE L SG + R Y++YR++ + R Sbjct: 65 VVQKIREGQVVTVERIQDMVENQLYVSGMQDVARNYIIYRDQHKERRK---------GSW 115 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGLSESDLE 199 + +M DG L+ FN ++ +E A + DV + +LSE N+ + + +E Sbjct: 116 HSVSVMRRDGNLVRFNPMKISAALEKAFRATLKITDVLLQEILSEI-NNLTNKI----VE 170 Query: 200 TALIFSSRTLIEK 212 L SR Sbjct: 171 ETLAKCSREQTID 183 >gi|283779061|ref|YP_003369816.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula staleyi DSM 6068] gi|283437514|gb|ADB15956.1| ribonucleoside-diphosphate reductase, alpha subunit [Pirellula staleyi DSM 6068] Length = 945 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 484/952 (50%), Positives = 634/952 (66%), Gaps = 24/952 (2%) Query: 14 AFPSLAYPFPEKIKGV-QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDII 72 +FP + G+ QV KR+G + FD ++I AI KA A G A+ + + Sbjct: 7 SFPQALATSSDSSAGLKQVRKRDGRLARFDLARIGTAITKAVTAELGAAAAHELPAH--V 64 Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 R+ + + +E IQD+VE LM +G H++ R YVLYRE ++ R A Sbjct: 65 AQSITDYTERVARWCDLQEQLAVESIQDEVERVLMTAGEHRVARRYVLYRESQAHKRKAS 124 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYD 191 + ++ + G L + LE + +AC Q + + ++ +++ Sbjct: 125 AT-----------QVRLASGELTALPINALEHWIAQACELHGQAPQAAAITADIVRSLPT 173 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ--KATHHEMQ 249 ++ + L A I + R+ +E EP + V A+ LL++ ++L + + E + Sbjct: 174 EVTPTQLFDATILALRSRVELEPVFTYVAAKLLLDRSDSQLLQNHHGAAILTPLSPSERR 233 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y YF Y+ V LHESM+D++L +A + ERD YLG+Q LYDRYFL Sbjct: 234 AGYQRYFPEYVRAAVARGQLHESMLDYNLEAIAAFIVPERDSLLAYLGVQTLYDRYFLAH 293 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G R+E+PQ F+MR+AMGLAL E K +R EFY+LLS HF +TPTLFN+GT HPQLS Sbjct: 294 EGLRVELPQIFWMRIAMGLALGEQNKLERVKEFYDLLSQLHFTSATPTLFNAGTCHPQLS 353 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC+L+TV DDL GIF A+Q+NA+L+K++GGLGNDWT +R LGA I GT GKSQG++PFLK Sbjct: 354 SCYLSTVEDDLVGIFKAIQDNAILSKWAGGLGNDWTNIRALGATIRGTGGKSQGIVPFLK 413 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 V +D AVAVNQGGKRKGAVCAYLETWH+D+EEFL+LR+ TGD+RRRTHD++TANWIPDLF Sbjct: 414 VVSDAAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRRTTGDERRRTHDLHTANWIPDLF 473 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 MKRV WTLFSP+EV DLH YG+ FE Y +YE+ AD G IK+FR++SAV LWRKM Sbjct: 474 MKRVLARDTWTLFSPNEVPDLHHTYGRAFEQKYLDYEQAADEGRIKLFRRVSAVDLWRKM 533 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 LT+LFETGHPW+T+KDP NIRSPQ HVGVVH+SNLCTEI LN+S+EETAVCNLGS+NL A Sbjct: 534 LTLLFETGHPWVTWKDPSNIRSPQDHVGVVHNSNLCTEILLNNSAEETAVCNLGSVNLGA 593 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 H + D L TIRTAVR+LDNVID+N + +A +N HR IGLGLMGFQ AL+ Sbjct: 594 HITDGVLDLAMLERTIRTAVRMLDNVIDLNFYPTPEAANANLRHRPIGLGLMGFQDALYA 653 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + I YAS AV+ ADESME IS+ A+ AS ELA+ERG Y+SF GS WD+G PID+I L+ Sbjct: 654 MQISYASDRAVQFADESMEAISYFALLASSELARERGKYASFAGSKWDRGYLPIDTIDLV 713 Query: 730 AEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + R ++ + RT++L W+ +++ ++ G+RNSN +AIAPTATI+NI GVSQSI+P+Y+N Sbjct: 714 EQERGIKIDVPRTAQLNWEVVRRAIREQGLRNSNVLAIAPTATISNIAGVSQSIEPTYRN 773 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LYVKSN+SG+FT VN +LV ELK LW E M+ LKY+DG + I IP ++K+ + TA Sbjct: 774 LYVKSNLSGEFTQVNEWLVEELKGLGLWSEEMLDQLKYYDGELAPIAEIPAEVKERYRTA 833 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 FEI+P WLIE A+RRQKWID QSLNLYL PSG+KLD +Y AW +GLKTTYYLR+ +A Sbjct: 834 FEIEPRWLIECAARRQKWIDMGQSLNLYLAAPSGRKLDEMYFLAWKLGLKTTYYLRTLAA 893 Query: 909 TSVEKSTLK------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 T VEKST+ N D P C +CE CQ Sbjct: 894 TQVEKSTIDVNRFGIQPRWMKNKSASGDIQIDRTLASAPEVCNLGGDCEACQ 945 >gi|221124254|ref|XP_002159508.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit [Hydra magnipapillata] Length = 846 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 495/845 (58%), Positives = 625/845 (73%), Gaps = 11/845 (1%) Query: 107 MQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166 M+ GHH+I R YVLYRE R+ RA ++AP AP + ++ D+G + + +L+ + Sbjct: 1 MRGGHHEIARAYVLYRERRTQERA--KQVATEAPAAPVIHVI-DNGQRVPLDLAQLQFRI 57 Query: 167 EEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225 E ACSGL DV + +L+ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR L Sbjct: 58 ETACSGLGADVKAAPILAETMRNLYDGVPLDEVYKAAILAARTLIEKDPDYTYATARLLF 117 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + REVL + +MQ Y +YF +I+ G+ A LL E + FDL L + L Sbjct: 118 HTISREVLG------RDVAQADMQEAYADYFPGFIKRGIAAELLDEKLQQFDLKRLGSAL 171 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 K RD F+YLGLQ LYDRYFLH +RIE+PQAFFMRVAMGL+L E ++E RA+EFY + Sbjct: 172 KAGRDLQFDYLGLQTLYDRYFLHEGKTRIELPQAFFMRVAMGLSLNEIDREARAIEFYEV 231 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 LSSF FM STPTLFNSGT QLSSC+LTTVPDDL GI+ +++ENA+L+K++GGLGNDWT Sbjct: 232 LSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVPDDLDGIYESIKENALLSKFAGGLGNDWT 291 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR LG+HI GTNG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+L Sbjct: 292 RVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLEL 351 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RKNTGDDRRRTHDMNTANWIPDLFM+RV + WTLFSP V DLHDL+G EFE AY Y Sbjct: 352 RKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFSPSNVPDLHDLFGAEFEKAYVAY 411 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E +A RGEIK R + A LWRKMLTMLFETGHPWITFKD CN+RSPQQH GVVHSSNLC Sbjct: 412 EEKAARGEIKPSRTVQASDLWRKMLTMLFETGHPWITFKDACNVRSPQQHAGVVHSSNLC 471 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 TEITLN+S ETAVCNLGS+NLL H + D++KL TI TA+R+LDNVIDIN + ++K Sbjct: 472 TEITLNTSDTETAVCNLGSVNLLQHLKDGALDHNKLKRTISTAMRMLDNVIDINYYAVKK 531 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+ SN HR +GLGLM FQ +L+ L IPYAS AVE AD+SME IS++A AS +LA+ER Sbjct: 532 ARDSNMRHRPVGLGLMAFQDSLYELRIPYASDAAVEFADQSMEAISYYAYWASTDLARER 591 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G Y S+KGSLWD+GV P D++ +LA R + ++R+S L W+ L+ ++ GMRNSNC+ Sbjct: 592 GKYHSYKGSLWDKGVLPPDTLDMLANARGGYVEVDRSSTLDWNALRNKIAADGMRNSNCV 651 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPTATI+NI GV SI+P + NL VKSN+SG+FTV+NS+LV +LK+ LWD+ M+ DL Sbjct: 652 AIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVINSYLVRDLKRLGLWDDVMVMDL 711 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 K+ DGS+ I+R+P ++K+++ATAFE++ WL+E+A+RRQKWIDQAQSLN+Y+ SGKK Sbjct: 712 KHFDGSLSPIDRVPQEIKQLYATAFEVETRWLVEAAARRQKWIDQAQSLNIYMAGASGKK 771 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 LD Y+ AWL GLKTTYYLR+ SAT EKST+ L D + + Sbjct: 772 LDETYKLAWLRGLKTTYYLRTMSATHAEKSTVTAGLDALQFRHRPDQSVEAGKPSSVDAR 831 Query: 945 TSDTE 949 + Sbjct: 832 IQGGD 836 >gi|62185357|ref|YP_220142.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila abortus S26/3] gi|62148424|emb|CAH64192.1| putative ribonucleotide reductase large subunit [Chlamydophila abortus S26/3] Length = 1045 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 480/935 (51%), Positives = 629/935 (67%), Gaps = 16/935 (1%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 V VI+R+G F+P KIS A+ KAF A + + I LT + V +L Sbjct: 118 VSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEINGLTNKIVEEILGVCS 177 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK-I 147 + IE IQD VE LM GH+ + + Y+LYRE RS +R + + + ++ + Sbjct: 178 PEKTIDIEVIQDIVEKQLMVVGHYDVAKNYILYREARSRIRENKQQIDAQKDLVEEVYDV 237 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSS 206 + DGT S N +L AC + +++ + N Y G+ ES++ A I ++ Sbjct: 238 VKSDGTTYSINKSQLIDKFIWACQRFPETTDPQVLADMAFANFYSGIKESEIALACIMAA 297 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 R IEKEP+YA V A L++ + +E + + AT ++ + F YI G + Sbjct: 298 RANIEKEPDYAYVAAELLMDVVYQEAMG------KTATDSDLAEAQKQCFKNYILNG-ET 350 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 L+ + ++DL LA L RD F Y+G+Q LYDRYF G R+E Q F+MRV+M Sbjct: 351 YRLNPRLKEYDLDALAEALDISRDQKFSYMGVQNLYDRYFNQHEGLRVETAQIFWMRVSM 410 Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 GLAL E +K A+ FYNLLS+F + +TPTLFNSGTRH QLSSC+L+T+ DDL I+ Sbjct: 411 GLALNEGDDKTFWAITFYNLLSTFRYTPATPTLFNSGTRHSQLSSCYLSTIQDDLAHIYK 470 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + +NAML+K++GG+GNDWT VR G+ I GTNGKSQGVIPF+KVANDTA+AVNQGGKRK Sbjct: 471 VISDNAMLSKWAGGIGNDWTGVRATGSLIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRK 530 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA YLETWH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WTLFSPD Sbjct: 531 GATSVYLETWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEQQGMWTLFSPD 590 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 +V LH+ YG EF+ YE YE + D GEIK+++KI A LWRKML+ML+ETGHPW+TFKD Sbjct: 591 DVPGLHEAYGTEFDKLYEEYESKIDTGEIKLYKKIPAADLWRKMLSMLYETGHPWMTFKD 650 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 P NIR+ Q HVGVV SNLCTEI LN S ETAVCNLGS+NL+ H N + KL TI Sbjct: 651 PSNIRAVQDHVGVVRCSNLCTEILLNCSENETAVCNLGSVNLVEHIENGDINEKKLEETI 710 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A+R+LDNVID+N + ++A +N +HRAIGLG+MGFQ AL+ L+I YASPEAVE AD+ Sbjct: 711 SIAIRILDNVIDLNFYPTQEAANANLSHRAIGLGIMGFQDALYKLNISYASPEAVEFADK 770 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--LAMNRTSR 743 S E ++++AI +S LA+ERG YSS+KGS WD+G P+D+I LL E R E + M+ + R Sbjct: 771 SSELVAYYAILSSSLLAKERGTYSSYKGSKWDRGYLPLDTIELLKEYRGEENVLMDTSCR 830 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W +++ +K+ GMRNS+ MAIAPTATI+NI GV+QSI+P+Y++L+VKSN+SG+FT+ N Sbjct: 831 KDWTPVREAIKSYGMRNSHTMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPN 890 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L+++LK+ LWD+ M+ DLKY DGS+ IERIPDDLKKI TAFEI+P WLIE ASRR Sbjct: 891 VYLISKLKELGLWDDDMLDDLKYFDGSLLEIERIPDDLKKIFLTAFEIEPEWLIECASRR 950 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----GV 919 QKWID QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS G+ Sbjct: 951 QKWIDMGQSLNLYLSEPNGKKLSAMYLTAWKKGLKTTYYLRSSAATSVEKSFTDINKRGI 1010 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + C+ + CE CQ Sbjct: 1011 QPRWMKNKSASTSIVVDRAKKTPVCSFEEGCESCQ 1045 Score = 132 bits (332), Expect = 3e-28, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 96/237 (40%), Gaps = 27/237 (11%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82 K K V+KRNG F+ +I +A+ AF + +++ I ++T + V Sbjct: 5 KEKHYTVVKRNGMFVPFNQERIFQALEAAFRDTRSLENDSPLPKDLENAISDITHRVVNE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 ++Q + +V +E IQD VE L +G + R+Y++YR+ + R Sbjct: 65 VIQKIREGQVVTVERIQDMVENQLYVNGLQDVARDYIIYRDHHKEQRE---------GSW 115 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVE---EACSGLQDVSSKIVLSETYKNMYDGL------ 193 + ++ DG+ + FN ++ +E A + DVS + +LSE + + + Sbjct: 116 HCVSVIRRDGSTVKFNPMKISAALEKAFRATQKITDVSIQEILSEI-NGLTNKIVEEILG 174 Query: 194 ---SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 E ++ +I + V L RE + + + Q+ + Sbjct: 175 VCSPEKTIDIEVIQDIVEKQLMVVGHYDVAKN---YILYREARSRIRENKQQIDAQK 228 >gi|330443802|ref|YP_004376788.1| ribonucleoside-diphosphate reductase subunit alpha [Chlamydophila pecorum E58] gi|328806912|gb|AEB41085.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila pecorum E58] Length = 1047 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 484/939 (51%), Positives = 633/939 (67%), Gaps = 18/939 (1%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL-Q 85 +GV +I+R+G F+P KIS A+ KAF A I LT + V ++ Q Sbjct: 116 RGVLIIRRDGTSVKFNPMKISAALEKAFRATLQINGITPSPTVLEINELTLKIVEEIMAQ 175 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAP 143 H A +HIE IQD VE LM +G + + + Y+LYRE R R + + Sbjct: 176 HVGKAHGIHIEAIQDIVEKQLMIAGFYDVAKSYILYREARMRARENKVSEVNSECFVEDE 235 Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETAL 202 +++ +D T N LE AC+ + SSK + + N++ G+ ES++ +A Sbjct: 236 VYRVVREDQTEYLLNKAELEKRFTWACARFPETTSSKTLADMAFANLFSGVKESEVVSAC 295 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I ++R IEKEP+YA V A L E + +E + A ++ + YF +YI E Sbjct: 296 IMAARANIEKEPDYAFVAADLLHEVVYQETVG------LSAVSSKLTDAHRRYFKQYILE 349 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G + L+ + ++DL LA L RD F Y+G+Q L+DRYF G R+E Q F+M Sbjct: 350 G-ENYRLNPQLKEYDLDALAEVLDLTRDRKFSYMGVQNLFDRYFNQHEGKRLETAQIFWM 408 Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 RV+MGLAL E EK A+ FY+LLS+F + +TPTLFNSG RH QLSSC+L+TV DDL Sbjct: 409 RVSMGLALNEGKEKTSWAITFYHLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLQ 468 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTAVAVNQG Sbjct: 469 HIYKVISDNALLSKWAGGIGNDWTDVRARGAKIKGTNGKSQGVIPFIKVANDTAVAVNQG 528 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA C YLE+WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ Q WTL Sbjct: 529 GKRKGAACVYLESWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLKQKGIWTL 588 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FSPD+V LH+ YG EFE YE YE++ + GEI+++RK+ A LWRKML+ML+ETGHPW+ Sbjct: 589 FSPDDVPGLHEAYGLEFEKLYEEYEQKIETGEIQLYRKVEAEVLWRKMLSMLYETGHPWL 648 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 TFKDP NIR+ Q HVGVV SNLCTEI LNSS ETAVCNLGS+NL+ H N + + KL Sbjct: 649 TFKDPSNIRAAQDHVGVVRCSNLCTEILLNSSESETAVCNLGSLNLVEHLENGEINEAKL 708 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 A TIR AVR+LDNVID+N + I +A ++N THRA+GLG MGFQ AL+ +I YAS EAVE Sbjct: 709 AETIRIAVRILDNVIDLNFYPIPEAAQANLTHRAVGLGCMGFQDALYEKNISYASQEAVE 768 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM--N 739 ADE E I++HAI +S ELA+ERG Y+S+KGS WD+G+ PID+I LL + R E + + Sbjct: 769 FADEVAEIIAYHAILSSTELAKERGVYASYKGSKWDRGLLPIDTIDLLKQARGEQYVLMD 828 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + R W+ +++ V+ GMRNS+ M IAPTATI+NI G++QSI+P+Y+NL+VKSN+SG+F Sbjct: 829 TSCRKDWEPVREAVRKYGMRNSHLMTIAPTATISNIIGITQSIEPTYKNLFVKSNLSGEF 888 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 T+ N +L+ +LK LWDE M+ DLKY DGS+ IERIP++LKK+ TAFEI+P WLIE Sbjct: 889 TIPNVYLIRKLKSLGLWDEDMLDDLKYFDGSLSEIERIPENLKKVFVTAFEIEPEWLIEC 948 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK-- 917 ASRRQKWID QSLNLYL EP+GKKL +Y AW GLKTTYYLRS +ATSVEKS Sbjct: 949 ASRRQKWIDMGQSLNLYLAEPNGKKLSTMYLTAWEKGLKTTYYLRSLAATSVEKSFTDIN 1008 Query: 918 --GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + + + C+ + CE CQ Sbjct: 1009 KRGIQPRWMKNMSASTSIIVERTAKNAVCSMEEGCESCQ 1047 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 78/191 (40%), Gaps = 21/191 (10%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTR 82 K K ++KRNG F+ +I +A+ AF + A ++ I ++T + V Sbjct: 5 KEKHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLEEDAPLPKDLEKSISDITSKVVGE 64 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA 142 +++ +V +E IQD VE L +G + R+Y++YR++ + R Sbjct: 65 VIEKISQGQVVTVERIQDIVESQLYVNGLQDVARDYIVYRDQHKEQRE---------SPW 115 Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 + I+ DGT + FN ++ +E+A + + + ++ Sbjct: 116 RGVLIIRRDGTSVKFNPMKISAALEKAFR----------ATLQINGITPSPTVLEINELT 165 Query: 203 IFSSRTLIEKE 213 + ++ + Sbjct: 166 LKIVEEIMAQH 176 >gi|254444373|ref|ZP_05057849.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Verrucomicrobiae bacterium DG1235] gi|198258681|gb|EDY82989.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Verrucomicrobiae bacterium DG1235] Length = 1062 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 430/938 (45%), Positives = 591/938 (63%), Gaps = 35/938 (3%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 +K V++I+R+ V + KI A+ +AF+++E ++ +TE+ Sbjct: 151 LKNVRLIRRDRKVVPWKQEKIEIAVRRAFLSLEQNSDPAV----EVAAIVTERIQAT--- 203 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 V IE++QD V+ LM+ GH K+ YVLYRE+R R ++ + + Sbjct: 204 ---GQAFVEIEEVQDIVQEELMKQGHFKVAAHYVLYREQRRAHREQEALQLATDTEQDSM 260 Query: 146 KIMMD-DGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG+ ++ L+ +E A GL ++ + E ++++D +SE+DLE + Sbjct: 261 VVVKKTDGSTYFWDGIDLKKRIEFASIGLDLCLNHDEIEIELRRSIFDEISEADLEKTIT 320 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++RTLIE++ ++AK AR L + +E L + ++ + + F Y+ G Sbjct: 321 LNARTLIEQDADFAKFAARIKLSYMYQETLGWDIVRDG---IGAIKTFHQKKFKEYVRHG 377 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRIEMPQA 319 + L+ + ++D+ LA L D F+YLG+Q LYDRY RIE PQ Sbjct: 378 IMIGRLNPKLKEYDINKLAKQLDPSADLEFDYLGIQTLYDRYLIIDKTQKQQRRIETPQF 437 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+MRVAMGL E E+E +A Y L S F STPTLFN+GT H QLSSC+L V D Sbjct: 438 FWMRVAMGLFHAEEERELKAKTLYKLYKSRRFCSSTPTLFNAGTCHSQLSSCYLYYVDDS 497 Query: 380 LYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI + +NA L+K++GGLG WT VRG G++I GTNG+SQG++PFLK+ ND +AV Sbjct: 498 IEGIMQRGIADNAYLSKWAGGLGGSWTSVRGTGSYIKGTNGESQGIVPFLKLHNDLLIAV 557 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRR HDMNTANW+PDLFMKR+ Sbjct: 558 NQGGKRRGSGCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQM 617 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+ F EV DLHD YG +FE Y YE +A +GEI +++ A+ +W++ML+M+FETGH Sbjct: 618 WSFFRTSEVPDLHDSYGADFEKKYTEYEAKAAKGEIW-SKEVPAIEVWKRMLSMIFETGH 676 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFD 617 PWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+S EETAVCNLGSI L H + D Sbjct: 677 PWITFKDPCNVRSPQDHCGVVHSSNLCTEITLNTSKEETAVCNLGSIVLDQHLDKDGNID 736 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 +DKL T++TA+R LDNVIDIN + E AK +N HR IGLG+MG Q+ L+L P+AS Sbjct: 737 HDKLRETVQTAIRALDNVIDINFYPTEAAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQ 796 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-EL 736 EAVE DE ME ++++AI AS +LA ERG Y S+KGS WD+G+ P D++ LL + R E+ Sbjct: 797 EAVEFNDEIMEAVAYYAIEASSDLAAERGTYKSYKGSKWDRGLLPQDTVDLLEKERGVEV 856 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + R +L W ++++V GMRNSN MAIAPTATI+NI G S I+P Y+NL+VKSN+S Sbjct: 857 DVPRGGKLDWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLS 916 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F ++N LV +LK R LW+ M +LKY DG + I+ IP DLK + TAF +D WL Sbjct: 917 GEFIILNQHLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWL 976 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + +A+RRQKWIDQ+QS+NL+L P K L +YR AW GLKTTYYLR+ A+++EK+T+ Sbjct: 977 VLAAARRQKWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKTTYYLRTLGASNIEKATV 1036 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V CE CQ Sbjct: 1037 GAKKELRGIVGGKAAPPEP------------EVCESCQ 1062 Score = 46.0 bits (107), Expect = 0.032, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 55/151 (36%), Gaps = 13/151 (8%) Query: 41 FDPSKISRAIMKAFMAV---EGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA--LIVHI 95 FD S+I I A V + + + + + Q V +L + V + Sbjct: 53 FDLSEIVDTIGNALANVLLSKNNTEVFTDENRQWVCTVARQVVDKLESKSPETLESRVGL 112 Query: 96 EDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLI 155 ++ D +E +L+ + + + + ++ R + ++++ D ++ Sbjct: 113 SELYDLIENTLVDNNAYDVAKSMLINR--------QRKLVADKTIGLKNVRLIRRDRKVV 164 Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 + +++E+ V A L+ S V Sbjct: 165 PWKQEKIEIAVRRAFLSLEQNSDPAVEVAAI 195 >gi|294055009|ref|YP_003548667.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita akajimensis DSM 45221] gi|293614342|gb|ADE54497.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita akajimensis DSM 45221] Length = 1080 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 425/942 (45%), Positives = 593/942 (62%), Gaps = 29/942 (3%) Query: 28 GVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHN 87 +++I+RNG V + SKI A+ K+F+++ + + L +N Sbjct: 153 SIRLIRRNGQVVPWSESKIEIAVRKSFLSLHLDSGPAMDVARAVTDRL----------NN 202 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL-K 146 ++IED+QD V+ LM+ GH K+ Y+LYR R+ +R ++ D + Sbjct: 203 SGQAFINIEDVQDTVQEELMRQGHFKVAESYILYRAHRTRLRDESGETEVDETQQESMIV 262 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + ++G ++ L+ +E A GL+ +S+ + +E +++Y + DL+ +I + Sbjct: 263 VTEENGENTFWDGVDLKRRIEFATIGLELTLSNDEIETELRRSLYPEMKREDLQKTIILN 322 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 ++ LIE++ ++A+ R LL + EVL + +++ + Y++ V+ Sbjct: 323 AKALIERDADFARFAGRVLLSYIYEEVLDWDIVRDG---VEQLKEAHRRGLKTYLKRAVE 379 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRIEMPQAFF 321 +H ++++DL L+ L D F+YLG+Q LYDRY R+E+PQ F+ Sbjct: 380 IERVHPKLLEYDLKRLSEALDPSADLDFDYLGVQTLYDRYLIVDKTAKKHRRLEVPQFFW 439 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +RVAMGL E ++E + YNL S F STPTLFNSGT H QLSSC+L V D + Sbjct: 440 IRVAMGLFHAEKEDREGYVISLYNLYKSRRFCSSTPTLFNSGTLHSQLSSCYLYKVDDSI 499 Query: 381 YG-IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + + +NA L+K++GGLG WT VRG G I GTNG+SQGVIPFLK+ ND VAVN Sbjct: 500 ESIMHRGIADNAFLSKWAGGLGGSWTAVRGTGGFIKGTNGESQGVIPFLKLHNDQLVAVN 559 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGGKR+G+ CAYLETWH D+ +FL+LRKNTGDDRRRTHDMNTANWIPDLFMKR+ W Sbjct: 560 QGGKRRGSGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDW 619 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLF +E DLHDLYGK FE Y YE A+RGE+ +K+ A+ LW+ ML M+FETGHP Sbjct: 620 TLFRSNETPDLHDLYGKAFEDRYCEYEAMAERGEL-FGKKVPAIELWKSMLRMIFETGHP 678 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDY 618 WITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S EETAVCNLGS+ L + D+ Sbjct: 679 WITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSDEETAVCNLGSVVLDSHLDKDGNLDH 738 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL T+ AVR LDNVIDIN + E AK +N HR IGLG+MG Q+AL + I +AS Sbjct: 739 EKLRETVSIAVRALDNVIDINFYPTEAAKTANSRHRPIGLGVMGLQNALFVKDIAFASQA 798 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE-LA 737 AVE DE ME I+++A AS +LA E G YS++KGS WD+G+ P D++ +L R E + Sbjct: 799 AVEFNDEFMEAIAYYAYEASSDLAAEHGTYSTYKGSKWDRGLMPQDTLDMLQSERGEEVV 858 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + R ++ W+ L+ ++ GMRNSN +AIAPTATI+NI G S I+P+Y+NL+VKSN+SG Sbjct: 859 VPRAGKMDWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSG 918 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 DF V+N LV +LK R LWD+ M+ LKY DG + I+ IP DL++ + TAF I+ + I Sbjct: 919 DFIVLNGHLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFI 978 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 ++A+RRQKWIDQ+QS+NL+L EP K L +YR AW GLKTTYYLR+ A+++EK+T+ Sbjct: 979 DAAARRQKWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKTTYYLRTLGASNIEKATVS 1038 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD-----TECEVCQ 954 P ++ +C+ + ECE CQ Sbjct: 1039 VKKEVRGRAGDATPAKKEYTDAEVKACSLEAMMNGGECEACQ 1080 >gi|269302785|gb|ACZ32885.1| ribonucleoside-diphosphate reductase alpha subunit [Chlamydophila pneumoniae LPCoLN] Length = 1044 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 470/933 (50%), Positives = 622/933 (66%), Gaps = 17/933 (1%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+R+GG F+P KIS A+ KAF A I +LT + V +L Sbjct: 120 IIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEINDLTLRIVEDVL-SLHGE 178 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAPKLKIM 148 +++E+IQD VE LM +G++ + + Y+LYRE R+ RA + + P + Sbjct: 179 GAINLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEETYVVQ 238 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +DGT LE AC S+++ + N+Y G+ E ++ TA I ++R Sbjct: 239 KEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMAAR 298 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 IE+EP+YA + A L L E L + P + ++ ++F YI G + Sbjct: 299 ANIEREPDYAFIAAELLTSSLYEETLGCNSQDP------NLSEIHKKHFKEYILNG-EEY 351 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 L+ + D+DL L+ L RD F Y+G+Q LYDRYF G R+E Q F+MRV+MG Sbjct: 352 RLNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMG 411 Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL I+ Sbjct: 412 LALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKV 471 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG Sbjct: 472 ISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 531 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ + WTLFSPD+ Sbjct: 532 AMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDD 591 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V LH+ YG EFE YE YER+ + GEI++++K+ A LWRKML+ML+ETGHPWITFKDP Sbjct: 592 VPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDP 651 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 NIRS Q HVGVV SNLCTEI LN S ETAVCNLGSINL+ H N + D +KL TI Sbjct: 652 SNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKETIS 711 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R+LDNVID+N + +AK++N THRA+GLG+MGFQ L+ L+I YAS EAVE +DE Sbjct: 712 IAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDEC 771 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744 E I+++AI AS LA+ERG Y+S+ GS WD+G P+D+I LL E R E ++ +S+ Sbjct: 772 SEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKK 831 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W ++ ++ GMRNS MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ N+ Sbjct: 832 DWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNT 891 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +LK+ LWD M+ DLKY DGS+ IERIP+ LKK+ TAFEI+P W+IE SRRQ Sbjct: 892 YLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQ 951 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWID SLNLYL EP GKKL +Y AW GLKTTYYLRS++ATSVEKS + + Sbjct: 952 KWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQ 1011 Query: 925 AVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954 + + ++ST C+ + CE CQ Sbjct: 1012 PRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 37/236 (15%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLL 84 K ++KRNG F+ +I +A+ AF + +++ I +T + V +L Sbjct: 7 KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +V +E IQD VE L SG + R+Y++YR++R R + Sbjct: 67 AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQRKAER---------GNSSSI 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ DG FN ++ +E+A + M + S++ + Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKAFR----------ATLQINGMTPPATLSEINDLTLR 167 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + L E + + M Y + YI Sbjct: 168 IVED----------------VLSLHGEGAINLEEIQDIVEKQLMVAGYYDVAKNYI 207 >gi|15618892|ref|NP_225178.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae CWL029] gi|15836515|ref|NP_301039.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae J138] gi|16752044|ref|NP_445410.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae AR39] gi|33242352|ref|NP_877293.1| ribonucleotide-diphosphate reductase subunit alpha [Chlamydophila pneumoniae TW-183] gi|7388068|sp|Q9Z6S5|RIR1_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|4377312|gb|AAD19121.1| Ribonucleoside Reductase, Large Chain [Chlamydophila pneumoniae CWL029] gi|7189784|gb|AAF38661.1| ribonucleoside-diphosphate reductase, alpha subunit [Chlamydophila pneumoniae AR39] gi|8979357|dbj|BAA99191.1| ribonucleoside reductase, large chain [Chlamydophila pneumoniae J138] gi|33236863|gb|AAP98950.1| ribonucleoside reductase large chain [Chlamydophila pneumoniae TW-183] Length = 1044 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 470/933 (50%), Positives = 623/933 (66%), Gaps = 17/933 (1%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +I+R+GG F+P KIS A+ KAF A I +LT + V +L Sbjct: 120 IIRRDGGSAKFNPMKISAALEKAFRATLQINGMTPPATLSEINDLTLRIVEDVL-SLHGE 178 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA--PIAPKLKIM 148 +++E+IQD VE LM +G++ + + Y+LYRE R+ RA + + P + Sbjct: 179 EAINLEEIQDIVEKQLMVAGYYDVAKNYILYREARARARANKDQDGQEEFVPQEETYVVQ 238 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSR 207 +DGT LE AC S+++ + N+Y G+ E ++ TA I ++R Sbjct: 239 KEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEDEVTTACIMAAR 298 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 IE+EP+YA + A L L E L + P + ++ ++F YI G + Sbjct: 299 ANIEREPDYAFIAAELLTSSLYEETLGCSSQDP------NLSEIHKKHFKEYILNG-EEY 351 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 L+ + D+DL L+ L RD F Y+G+Q LYDRYF G R+E Q F+MRV+MG Sbjct: 352 RLNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVSMG 411 Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL I+ Sbjct: 412 LALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIYKV 471 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKRKG Sbjct: 472 ISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKRKG 531 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ + WTLFSPD+ Sbjct: 532 AMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSPDD 591 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V LH+ YG EFE YE YER+ + GEI++++K+ A LWRKML+ML+ETGHPWITFKDP Sbjct: 592 VPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFKDP 651 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 NIRS Q HVGVV SNLCTEI LN S ETAVCNLGSINL+ H N++ D +KL TI Sbjct: 652 SNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNDKLDEEKLKETIS 711 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R+LDNVID+N + +AK++N THRA+GLG+MGFQ L+ L+I YAS EAVE +DE Sbjct: 712 IAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDEC 771 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744 E I+++AI AS LA+ERG Y+S+ GS WD+G P+D+I LL E R E ++ +S+ Sbjct: 772 SEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKK 831 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W ++ ++ GMRNS MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ N+ Sbjct: 832 DWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNT 891 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +LK+ LWD M+ DLKY DGS+ IERIP+ LKK+ TAFEI+P W+IE SRRQ Sbjct: 892 YLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQ 951 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 KWID SLNLYL EP GKKL +Y AW GLKTTYYLRS++ATSVEKS + + Sbjct: 952 KWIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKTTYYLRSQAATSVEKSFIDINKRGIQ 1011 Query: 925 AVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954 + + ++ST C+ + CE CQ Sbjct: 1012 PRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 1044 Score = 126 bits (317), Expect = 2e-26, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 21/194 (10%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEG--KGASRSIRVQDIIKNLTEQTVTRLL 84 K ++KRNG F+ +I +A+ AF + +++ I +T + V +L Sbjct: 7 KHYTIVKRNGMFVPFNQDRIFQALEAAFRDTRSLETSSPLPKDLEESIAQITHKVVKEVL 66 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +V +E IQD VE L SG + R+Y++YR++R R + Sbjct: 67 AKISEGQVVTVERIQDLVESQLYISGLQDVARDYIVYRDQRKAER---------GNSSSI 117 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + I+ DG FN ++ +E+A + M + S++ + Sbjct: 118 IAIIRRDGGSAKFNPMKISAALEKAFR----------ATLQINGMTPPATLSEINDLTLR 167 Query: 205 SSRTLIEKEPNYAK 218 ++ A Sbjct: 168 IVEDVLSLHGEEAI 181 >gi|72163400|ref|YP_291057.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] gi|71917132|gb|AAZ57034.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] Length = 821 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 523/821 (63%), Positives = 637/821 (77%), Gaps = 25/821 (3%) Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 +R+ +V EAC GL S++ V++E + Y G++ ++LE ALI ++RT +E +P+Y+ Sbjct: 1 MERIRKVVAEACQGLPGASAETVIAEATRGFYPGITPAELELALIMAARTFVETDPDYSY 60 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 V+AR LL+KLRRE LT + P +ATH +M YPEY +I G++ L + DFDL Sbjct: 61 VSARLLLDKLRREALTFLSGHPDEATHADMARRYPEYLRAFITRGIELEHLTPELADFDL 120 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L L+ ERD F YLGLQ LYDRYFLH G+R E+PQAF MRVAMG+AL E ++ R Sbjct: 121 DRLGAALRPERDLNFTYLGLQTLYDRYFLHHEGTRYELPQAFLMRVAMGVALHEDDRNAR 180 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A+EFY LLSSF FMCSTPTLFN+GTR PQLSSCFLTTV DDL IF A+ NA+L+KYSG Sbjct: 181 AIEFYELLSSFDFMCSTPTLFNAGTRRPQLSSCFLTTVGDDLAEIFRAISNNALLSKYSG 240 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 GLGNDWTPVRGLGAHI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHID Sbjct: 241 GLGNDWTPVRGLGAHIKGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHID 300 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 +EEFLDLRKNTGD+RRRTHDMNTANW+PDLF++RV +A WTLFSPDEV DLHD YG++F Sbjct: 301 IEEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFSPDEVPDLHDRYGEDF 360 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 AY YER ADRGEI+VFR++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GV Sbjct: 361 ARAYVAYERAADRGEIRVFRRVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGV 420 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 VHSSNLCTEITLN+S +E AVCNLGS+NL H + D ++L T+RTAVR+LDNVID+ Sbjct: 421 VHSSNLCTEITLNTSLDEVAVCNLGSVNLANHVGPDGLDAERLRRTVRTAVRMLDNVIDV 480 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N +TI +A+++N HR IGLGLMG+Q AL L +P ASPEAVE ADESME +S++AI AS Sbjct: 481 NLYTIPEAERANMRHRPIGLGLMGYQDALFTLRLPVASPEAVEFADESMELLSYYAIEAS 540 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDELKKRVKTIG 757 +LA ERG+YSSF+GSLW +G+ PIDS+ LLAE R +L ++RT RL WD L+++V+T G Sbjct: 541 ADLAAERGSYSSFEGSLWSRGILPIDSLELLAEARRGDLDVDRTQRLDWDTLREKVRTTG 600 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRNSN MAIAPTATIANI GV+ SI+P Y+NLYVK+NMSGDFTVVN LV +LK+R LWD Sbjct: 601 MRNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSGDFTVVNPSLVRDLKERGLWD 660 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E M++ LK HDGS+G I+R+P+DLK ++ATAFEIDP+WL+++ASRRQKWIDQAQSLNLY+ Sbjct: 661 EEMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLVDAASRRQKWIDQAQSLNLYM 720 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH- 936 EPSG+KLD +YR+AW GLKTTYYLRS+ AT VEKSTL+G DG+LNAV ++ + Sbjct: 721 AEPSGRKLDELYRRAWRKGLKTTYYLRSQGATHVEKSTLRGTDGRLNAVTPVAVSAPSPS 780 Query: 937 -----------------------SLGIPSSCTSDTECEVCQ 954 + D ECE CQ Sbjct: 781 PTPAPRPAAAPPRSAAGPAPDLTAEAAAFCAVDDPECEACQ 821 >gi|171913277|ref|ZP_02928747.1| ribonucleotide-diphosphate reductase subunit alpha [Verrucomicrobium spinosum DSM 4136] Length = 1109 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 413/971 (42%), Positives = 591/971 (60%), Gaps = 43/971 (4%) Query: 13 DAFPSLAYPFP-EKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDI 71 ++ P + ++I+RNG V S++P+KI A+ KAF++VE + Sbjct: 153 ESMSDTEANAPVGLLVPTKIIRRNGQVVSWNPNKIELAVSKAFVSVEMGTTHAKA----V 208 Query: 72 IKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS--DVR 129 + LT Q + Q +HIE +QD VE LM+ GH K + Y+LYR R+ R Sbjct: 209 AEALTHQMIEEAKQ------FIHIEQVQDLVEEQLMRQGHFKAAKAYMLYRALRADSRER 262 Query: 130 AAQS-------HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181 A+S D + + + D I ++ L+ ++ A GL +S + Sbjct: 263 DAKSAADISAPELPVDDGQQEMIMVRISDKETILWDGLDLQRRIDFAMMGLDLCISRAEI 322 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 S +++ +S L+ +I +++ L+ ++ ++A+ AR LL + EVL + Sbjct: 323 ESSLRRSLATDISLDHLKQTIILNAKALMARDADFARFAARILLSYIYEEVLGWDIVRDG 382 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 +Q + F R ++ GV+ ++ ++DFDL LA+ L D F+YLG+ L Sbjct: 383 ---IGSLQTFHRRAFRRNLQRGVEIDRINAKLLDFDLDKLADALDPAADMDFDYLGIHTL 439 Query: 302 YDRYFLHING----SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 YDRY + R+E PQ F+MRVAMGL ++E + ++ + Y + S F STPT Sbjct: 440 YDRYLIIDKKTKPAKRLETPQLFWMRVAMGLFVREEDPTEKVIALYRMYKSRRFCSSTPT 499 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 LFNSGT H QLSSC+L V D++ I + ENA L+K++GGLG WT VRG G++I G Sbjct: 500 LFNSGTLHSQLSSCYLYKVDDNIESIMIRGIAENAFLSKWAGGLGGSWTAVRGTGSYIKG 559 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG+SQGVIPFLK+ ND VAVNQGGKR+G+ CAYLETWH D+ +FLDLRKN GD+RRRT Sbjct: 560 TNGESQGVIPFLKLHNDQLVAVNQGGKRRGSGCAYLETWHNDIVDFLDLRKNVGDERRRT 619 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANW+PDLFMKR+ + WTLF +E DLH+LYG+ FE Y YE A G++ + Sbjct: 620 HDMNTANWVPDLFMKRMEARSHWTLFRANETPDLHELYGQAFEKRYLEYEAMAAEGKV-L 678 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 ++I A+ LW+ ML +FETGHPWITFKDPCN+RSPQ H GV+HSSNLCTEITLN+S +E Sbjct: 679 GKQIPAIDLWKSMLKAIFETGHPWITFKDPCNVRSPQDHAGVIHSSNLCTEITLNTSKDE 738 Query: 597 TAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 TAVCNLGS+ L H D+ KL T+R AVR LDNVIDIN + + AK +N HR Sbjct: 739 TAVCNLGSVILENHLDEAGNIDHTKLRETVRMAVRALDNVIDINFYPTDAAKTANTRHRP 798 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG Q +L+ +P+AS EAV+ DE ME ++++A AS +LA E G YS++ GS Sbjct: 799 IGLGVMGLQYSLYRKGLPFASKEAVDFNDEVMEAVAYYAYEASSDLAAELGKYSTYPGSK 858 Query: 716 WDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W +G+ P D++ LL + R + + R ++ W +++++ GMRNSN +AIAPTATI+N Sbjct: 859 WSRGLLPQDTVDLLEKERGEPVDVVRGGKMDWSPVREKIAKQGMRNSNVLAIAPTATISN 918 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G S I+P + N + KSN+ G++ V+N +LV +LK+RDLW + LKY DG + + Sbjct: 919 IMGSSPCIEPLFTNNFTKSNLGGNYVVLNPYLVKDLKKRDLWTNEVAERLKYFDGELAAM 978 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 + IP DLK+ +ATAF +D +++++A+RRQKWIDQ+QS+NL+ + + L +YR AW Sbjct: 979 DEIPADLKRKYATAFSVDWAYVLDAAARRQKWIDQSQSVNLWCPDTDMRTLSHMYRAAWR 1038 Query: 895 MGLKTTYYLRSRSATSVEKSTLK-----------GVDGKLNAVPVTDPNSSTHSLGIPSS 943 GLKTTYYLR++ A+S+E ST + + V Sbjct: 1039 KGLKTTYYLRTKGASSIEGSTTQVQTDIRGVVAQTAAAVADKAKVDADEYKQFLAEARRK 1098 Query: 944 CTSDTECEVCQ 954 + +CE+CQ Sbjct: 1099 AQAGEDCEMCQ 1109 Score = 42.9 bits (99), Expect = 0.25, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 57 VEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITR 116 V+ + + + K E+ LL + IE + L++ H + R Sbjct: 91 VKVFSLQVAQELHERAKRNAEKVGDELLSLTAQEIYHAIEHV-------LVKQNAHDVAR 143 Query: 117 EYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEA 169 V+ R +R + + + + P KI+ +G ++S+N ++E+ V +A Sbjct: 144 S-VIARRQRLESMSDTEANAPVGLLVPT-KIIRRNGQVVSWNPNKIELAVSKA 194 >gi|284032752|ref|YP_003382683.1| ribonucleoside-diphosphate reductase subunit alpha [Kribbella flavida DSM 17836] gi|283812045|gb|ADB33884.1| ribonucleoside-diphosphate reductase, alpha subunit [Kribbella flavida DSM 17836] Length = 806 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 502/802 (62%), Positives = 628/802 (78%), Gaps = 9/802 (1%) Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 + N +RL ++V EA +GL V +++L+ET + YDG+ + ++E AL+ ++RT +E+E Sbjct: 13 TAALNVERLRLMVAEASAGLDAVDPELILTETLGSCYDGIPQHEVELALVMAARTYVEQE 72 Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P Y++ AR LL+++RREVL V+ +P++A+ +M+ Y YF RY+ G++A LL + Sbjct: 73 PQYSQAAARLLLDQIRREVLGRVHGEPRQASQADMRTAYAGYFPRYLAVGIEAGLLDHEL 132 Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 FDL LA ++ ERD F +LGLQ LYDRY LHI+ +R E+PQAFF+RVAMG+ALKE Sbjct: 133 ASFDLDRLAAAIRPERDLDFTFLGLQTLYDRYLLHIDKTRFELPQAFFLRVAMGMALKEH 192 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 ++E RA+EFY LLSSF FM STPTLFN+GT PQLSSCFLTTV DDL GIF ++ NA+L Sbjct: 193 DREARALEFYELLSSFRFMSSTPTLFNAGTTRPQLSSCFLTTVEDDLAGIFTGIRNNALL 252 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 AKYSGGLGNDWTP+RG+GA I GTNG+SQGV+PFLK+ANDTA+AV+QGGKRKGAVCAYLE Sbjct: 253 AKYSGGLGNDWTPIRGIGATIRGTNGESQGVVPFLKIANDTAIAVHQGGKRKGAVCAYLE 312 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 TWH+DVE+FL+LRKNTGD+RRRTHDMNTANW+PDLF++RV +AGWTLFSPDEV LHDL Sbjct: 313 TWHVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFSPDEVPGLHDL 372 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG F AYE YER ADRGEI+VFR++ AV LWR+MLT+LFETGHPWITFKD CN+RSPQ Sbjct: 373 YGAAFAAAYEQYERAADRGEIRVFRRVRAVDLWRRMLTVLFETGHPWITFKDACNLRSPQ 432 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 QH GVVHSSNLCTEITLN++ +ETAVCNLGS+NL+AH D L T+RTAVR+LD Sbjct: 433 QHDGVVHSSNLCTEITLNTTVDETAVCNLGSVNLVAHLTPAGLDAGLLRDTVRTAVRMLD 492 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NVID+N +T +++++N HR +GLGLMGF AL L +PYAS AV AD SME +S+H Sbjct: 493 NVIDVNFYTTPESERANQRHRPVGLGLMGFADALFALRVPYASDAAVAFADTSMEQLSYH 552 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKR 752 AI AS +LA ERG Y ++ GSLW QG+ PIDS+ LL E R +L ++ ++ L WD L+ + Sbjct: 553 AIEASSDLAAERGTYRTYDGSLWSQGILPIDSVELLREARGGDLDVDTSTTLDWDALRAK 612 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ GMRNSN +AIAPTATI+NICGVSQSI+P+Y NL+VKSNMSG+FTV N +LV +LK Sbjct: 613 VRRDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFTVANPYLVADLKA 672 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 R LWD+ M+ DLKYHDG + IERIP DL+ ++ATAFEIDP WL+ +ASRRQKWIDQ+QS Sbjct: 673 RGLWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAASRRQKWIDQSQS 732 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 LNLY+ EPSGK LD +YR AW GLKTTYYLRS+SAT VEKSTL+G DG+LNAVPV Sbjct: 733 LNLYVSEPSGKALDELYRSAWRHGLKTTYYLRSQSATHVEKSTLRGTDGRLNAVPVEPVA 792 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + D +CE CQ Sbjct: 793 AV--------CAIDDQDCEACQ 806 >gi|297563528|ref|YP_003682502.1| ribonucleoside-diphosphate reductase, subunit alpha [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847976|gb|ADH69996.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 882 Score = 775 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 517/839 (61%), Positives = 617/839 (73%), Gaps = 35/839 (4%) Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DG R+E +V EAC+ L VS++ VL+E + Y G+S++++E AL+ ++R+ Sbjct: 45 KDGN-PPAAVDRIEHVVAEACARLTGVSAEKVLTEARRGFYPGISDAEVELALVMAARSF 103 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +E +P+Y+ V AR LL+KLRRE LT + P A EM Y Y Y+ G+ L Sbjct: 104 VEVDPDYSYVAARLLLDKLRREALTFISGAPDAAGQSEMGERYAAYLAAYVGRGIDLGQL 163 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 ++ FDL L L+ ERD F +LG+Q LYDRYFLH + R E+PQAFFMRVAMGLA Sbjct: 164 DPALAKFDLARLGAALRPERDEQFTFLGIQTLYDRYFLHSDEVRYELPQAFFMRVAMGLA 223 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 L E ++E RA+EFY LLSSF FM STPTLFNSGT QLSSCFLTTV DDL IF + Sbjct: 224 LNEDDREARAIEFYELLSSFDFMASTPTLFNSGTVRAQLSSCFLTTVGDDLQAIFHGISN 283 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 NAML+KYSGGLGNDWTPVRGLG+HI GTNGKSQGV+PFLK+ANDTAVAVNQGGKRKGAVC Sbjct: 284 NAMLSKYSGGLGNDWTPVRGLGSHIRGTNGKSQGVVPFLKIANDTAVAVNQGGKRKGAVC 343 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 AYLETWHID+EEFLDLRKNTGD+RRRTHDMNTANW+PDLFM+RV Q WTLFSPDEV D Sbjct: 344 AYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFMQRVEQGGSWTLFSPDEVPD 403 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 LHD YG EF AY +YE +A G IKV + + AV LWR+MLTMLFETGHPWITFKDP N+ Sbjct: 404 LHDKYGAEFAEAYAHYEAEAAAGRIKVSKTLPAVDLWRRMLTMLFETGHPWITFKDPSNL 463 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 RSPQQHVGVVHSSNLCTEITLN+S++E AVCNLGS+NL H + D ++L T+RTAV Sbjct: 464 RSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSVNLAQHVGPDGLDAERLRRTVRTAV 523 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N +TI +A+++N HR +GLGLMGFQ AL L P+AS AV ADESME Sbjct: 524 RMLDNVIDVNFYTIPEARRANMRHRPVGLGLMGFQDALFKLRTPFASDGAVSFADESMEL 583 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDE 748 IS++AI AS+ELA ERG+Y SF+GSLW +GV PIDS+ LLAE R +L M+R L WD Sbjct: 584 ISYYAIEASMELAAERGSYESFEGSLWSRGVLPIDSLRLLAESRDGDLDMDRGETLDWDS 643 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++RVKT GMRNSN MAIAPTATIANI GVSQSI+P Y+NLYVKSNMSGDFTVVN +LV Sbjct: 644 LRERVKTTGMRNSNVMAIAPTATIANITGVSQSIEPVYRNLYVKSNMSGDFTVVNPYLVR 703 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +LK R LWD+ M+S LK HDGS+G I+R+P DLK ++ATAFE+DP WL+++ SRRQKWID Sbjct: 704 DLKARGLWDDDMVSALKMHDGSLGAIDRVPADLKALYATAFEVDPEWLVDAGSRRQKWID 763 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP- 927 QAQSLNLY+ PSG+KLD +YR+AW GLKTTYYLRS+SAT VEKSTLKG DG+LNAV Sbjct: 764 QAQSLNLYMAAPSGRKLDSLYRRAWRSGLKTTYYLRSQSATHVEKSTLKGTDGRLNAVAA 823 Query: 928 --------------------------------VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + D ECE CQ Sbjct: 824 TPAAPVASPAPSPAPAPSPAPSPSPNPQPVTGGAADEDEFEIIDGQACSIDDPECEACQ 882 >gi|134097870|ref|YP_001103531.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharopolyspora erythraea NRRL 2338] gi|291007411|ref|ZP_06565384.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharopolyspora erythraea NRRL 2338] gi|133910493|emb|CAM00606.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharopolyspora erythraea NRRL 2338] Length = 782 Score = 770 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 515/781 (65%), Positives = 609/781 (77%), Gaps = 3/781 (0%) Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV 236 S+ VL E +N +DG+S +L A I ++R ++E EPNY++VTAR LL++LRRE LT + Sbjct: 2 SADAVLDEVRRNSFDGISADELAIAQIMAARIMVEAEPNYSQVTARLLLDRLRREALTYL 61 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 P A +M+ Y YF Y+ GV+ L + FDL L L ERD +F +L Sbjct: 62 AGLPDDADQEQMRERYAPYFRDYVARGVELGQLDPELASFDLDRLGAALLPERDMSFGFL 121 Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 GLQ LYDRYFLH +G+R E+PQAFFMRVAMGLAL+E ++E RAVEFY LLSSF FMCSTP Sbjct: 122 GLQTLYDRYFLHHDGTRYELPQAFFMRVAMGLALREDDREARAVEFYRLLSSFDFMCSTP 181 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TLFNSGT PQLSSCFLTTV DDL+GIF ++ NAML+KY+GGLGNDWTPVRG+GAHI G Sbjct: 182 TLFNSGTTRPQLSSCFLTTVDDDLHGIFHSISNNAMLSKYAGGLGNDWTPVRGIGAHIRG 241 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG+SQGV+PFLK+ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT Sbjct: 242 TNGQSQGVVPFLKIANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 301 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 HDMNTANW+PD FM+RV + WTLFSPDE DLHDLYG F Y YER A+RGEIKV Sbjct: 302 HDMNTANWVPDEFMRRVEADGTWTLFSPDETPDLHDLYGTAFAERYRAYERAAERGEIKV 361 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 +R++ AV LWR+MLTMLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E Sbjct: 362 YRQVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSRDE 421 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 AVCNLGS+NL H + D+++L T RTAVR+LDNVIDIN +TI +A++SN HR I Sbjct: 422 VAVCNLGSVNLARHVTADGIDHERLERTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPI 481 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLGLMGF AL IP +S AVE AD SME IS+HAISAS +LA ERG Y SF+GSLW Sbjct: 482 GLGLMGFSDALFAQRIPVSSQAAVEFADRSMEEISYHAISASADLAAERGRYESFEGSLW 541 Query: 717 DQGVFPIDSIGLLAEVR-DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 QGV PIDS+ LL + R + ++RT W L++RV+ +GMRNSN MAIAPTATIANI Sbjct: 542 SQGVLPIDSLALLEQARDGHVDLDRTMTRDWGALRERVRAVGMRNSNVMAIAPTATIANI 601 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 CGV QSI+P Y+NLYVKSNMSGDFTVVN LV +LK LWDE M++DLK+HDGS+ I Sbjct: 602 CGVGQSIEPIYRNLYVKSNMSGDFTVVNPHLVADLKAAGLWDEDMLADLKFHDGSLDPIS 661 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 RIP +LK+++ATAFE++P WL+E+A+RRQKWIDQAQSLNLY+ PSG+KLD +YR AW Sbjct: 662 RIPGELKELYATAFEVEPRWLVEAAARRQKWIDQAQSLNLYVAAPSGRKLDELYRLAWRQ 721 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT--DPNSSTHSLGIPSSCTSDTECEVC 953 GLKTTYYLRS SAT VEKSTL+G DGKLNAVP T P T ++ + D +CE C Sbjct: 722 GLKTTYYLRSTSATHVEKSTLRGTDGKLNAVPTTPVAPVVPTAAVDGAACSVDDPDCEAC 781 Query: 954 Q 954 Q Sbjct: 782 Q 782 >gi|269839639|ref|YP_003324331.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermobaculum terrenum ATCC BAA-798] gi|269791369|gb|ACZ43509.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermobaculum terrenum ATCC BAA-798] Length = 819 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 448/814 (55%), Positives = 586/814 (71%), Gaps = 9/814 (1%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ +G L+ + R+ ++ AC GL + + +E +++YD ++ + +A+I Sbjct: 12 RVRVVSPEGGLVPLDPDRVRRHLQHACRGLPECDPDELANEVVRSLYDRVTPEQIRSAMI 71 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++R IE++P Y KV +R +LE++ +E V + E+ Y E F RY+ Sbjct: 72 LAARARIERDPAYDKVASRLMLEQIYQESWGWV------PSEAELAATYREMFPRYVHAC 125 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + A L E + FDL LA+ L+ ERD Y+GLQ LYDRY L + G R+E PQ F+MR Sbjct: 126 ISAGRLSEELARFDLARLASALRPERDEKLRYIGLQTLYDRYLLDVEGRRLEAPQYFWMR 185 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VAMGLAL+E + RA +FY+LLSS F+ +TPTLFNSGT HPQLSSC+L+TV DDL I Sbjct: 186 VAMGLALREDDPNARAAQFYDLLSSLRFVSATPTLFNSGTPHPQLSSCYLSTVEDDLEHI 245 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 F + +NA L+K++GGLGNDWT VR GA I GT+GKSQGVIPFLK+ NDTAVAVNQGGK Sbjct: 246 FKVIGDNAKLSKWAGGLGNDWTRVRATGALIRGTHGKSQGVIPFLKIVNDTAVAVNQGGK 305 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGAVC YLE WH+D EEFL+LRKNTGD+RRRTHDM+TA+W+PDLFM+RV + WTLFS Sbjct: 306 RKGAVCCYLEPWHLDFEEFLELRKNTGDERRRTHDMHTASWVPDLFMRRVQEGGTWTLFS 365 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+EV DLH+LYG+ FE Y YER A+ G+++ +++ A LWRKML+ML+ETGHPWI F Sbjct: 366 PNEVPDLHELYGRAFERRYVEYERMAEEGKLRQHKRVDAKMLWRKMLSMLWETGHPWIAF 425 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623 KDP NIRS Q HVGV+HSSNLCTEI L +S EETAVCNLGSINL+ H + + D KLA Sbjct: 426 KDPSNIRSAQDHVGVIHSSNLCTEILLPTSREETAVCNLGSINLVEHLSGDGLDEAKLAE 485 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+RTAVR+LDNVIDIN + +A++SN HR IGLG+MGF AL L IPYASP+AVE + Sbjct: 486 TVRTAVRMLDNVIDINFYPTPEARRSNLRHRPIGLGIMGFHDALLALRIPYASPQAVEFS 545 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRTS 742 D++ME IS+HAI AS ELA ERG Y S++GS W +G+ PID+I LL R +L M+RT+ Sbjct: 546 DQTMELISWHAIMASSELAAERGRYPSYQGSKWSRGLLPIDTIELLERERGGDLEMDRTA 605 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 RL W +++ V G+RNS MAIAPTATI+NI GVSQSI+P Y+NL+VKSN+SGDFT+V Sbjct: 606 RLDWGPVREAVARWGVRNSQIMAIAPTATISNIAGVSQSIEPHYRNLFVKSNLSGDFTIV 665 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +LK+ LW + M+ +KY+DGSI IE IPD++K ++ TA EIDP+WLIE ASR Sbjct: 666 NPYLVEDLKRLGLWSQEMLDRIKYYDGSILPIEEIPDEVKHLYLTAHEIDPLWLIECASR 725 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-- 920 RQKW+D QSLN+Y+ EPSGKKL IY AW GLKTTYYLR+ AT+VEK+++ Sbjct: 726 RQKWVDMGQSLNIYVAEPSGKKLHEIYFAAWRKGLKTTYYLRAVGATNVEKASMDINRFG 785 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + +S + S+C +CE CQ Sbjct: 786 VQPRWMRSRSASSRVRIVREGSTCQLGEDCEACQ 819 >gi|254449375|ref|ZP_05062817.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma proteobacterium HTCC5015] gi|198261021|gb|EDY85324.1| ribonucleoside-diphosphate reductase, alpha subunit [gamma proteobacterium HTCC5015] Length = 839 Score = 765 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 501/839 (59%), Positives = 626/839 (74%), Gaps = 55/839 (6%) Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRR 230 GL+DV + +L++T +N++DG+++ ++ TALI S+RT+IEK+PNY++V+AR LL+ +R Sbjct: 1 EGLEDVDADKILNDTLRNVFDGVAKKEVATALIMSARTMIEKDPNYSQVSARLLLDSMRE 60 Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E LT + AT EMQ YPEYF YI V+ LL M +FDL L L ERD Sbjct: 61 EALTFLGDGAPAATQAEMQERYPEYFKHYIARAVELELLDGEMHNFDLERLGQALLPERD 120 Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F YLGLQ LYDRYF+H + G R E+PQAFFMRVAMGLA+ E ++E+RA+EFY LLSSF Sbjct: 121 QGFTYLGLQTLYDRYFIHDDSGVRFELPQAFFMRVAMGLAINEVDREERAIEFYTLLSSF 180 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 FM STPTLFNS T PQLSSC+LTTVPDDL GIF A++++AML+K++GGLGNDWT VR Sbjct: 181 DFMSSTPTLFNSATLRPQLSSCYLTTVPDDLDGIFSAVKDDAMLSKFAGGLGNDWTRVRA 240 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGAHI GTNGKSQGV+PFLKVANDTAVAVNQGGKRKGA+CAYLE+WH+D+EEFL+LRKNT Sbjct: 241 LGAHIKGTNGKSQGVVPFLKVANDTAVAVNQGGKRKGAMCAYLESWHLDIEEFLELRKNT 300 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 GDDRRRTHDMNTANWIPDLFMKRV ++ WTLFSP++V DLHDL GK+FE AY YE +A Sbjct: 301 GDDRRRTHDMNTANWIPDLFMKRVAEDGEWTLFSPNDVDDLHDLVGKKFEKAYTAYEAKA 360 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 D GEIK+F+++ AV LWRKML MLFETGHPWITFKDPCN+RSPQQH GVVHSSNLCTEIT Sbjct: 361 DSGEIKLFKRVKAVDLWRKMLGMLFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCTEIT 420 Query: 590 LNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 LN+S E AVCNLGS+N+ H + D KL TI+TA+R+LDNVID N +++ +A++ Sbjct: 421 LNTSDMEIAVCNLGSVNMAQHVTEEGELDVAKLERTIKTAMRMLDNVIDYNYYSVPQARR 480 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 SN HR +GLG+MGFQ AL+ + Y S EAVE AD +ME +S++AIS+SV+LA+ERGAY Sbjct: 481 SNIRHRPVGLGIMGFQDALYKKGVAYQSDEAVEFADRAMEAVSYYAISSSVDLAEERGAY 540 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 SSF GSLW +G+ PIDSI +LAE R + ++R+ + WD L++RV+ GMRNSNCMAIA Sbjct: 541 SSFPGSLWSRGILPIDSIDILAEHRGDFLQVDRSQTMDWDSLRQRVRESGMRNSNCMAIA 600 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV ELK R+LWD+ M++DLKY+ Sbjct: 601 PTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVKELKARNLWDDVMVNDLKYY 660 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDF 887 DGS+ IERIPDDL++I++TAFEID WL+E+ SRRQKWIDQ QSLNLY+ EPSGKKLD Sbjct: 661 DGSVHPIERIPDDLRQIYSTAFEIDARWLVEAGSRRQKWIDQGQSLNLYMSEPSGKKLDN 720 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV-------------------------DGK 922 +Y+ AW GLKTTYYLRS AT VEK+ + G Sbjct: 721 LYKLAWARGLKTTYYLRSMGATHVEKTASRPAPGSGGQQGGSSDGTASGQSQEGQAGQGG 780 Query: 923 LNAVPVTDPNSSTH--------------------------SLGIPSSCTSD-TECEVCQ 954 ++A T ++ + P +C+ D +CE CQ Sbjct: 781 VSASAPTGASAQPPQAQATAPVSATASVSSDAFDNISSETAPEAPQACSIDNPDCEACQ 839 >gi|257055669|ref|YP_003133501.1| ribonucleotide-diphosphate reductase subunit alpha [Saccharomonospora viridis DSM 43017] gi|256585541|gb|ACU96674.1| ribonucleoside-diphosphate reductase, alpha subunit [Saccharomonospora viridis DSM 43017] Length = 815 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 511/804 (63%), Positives = 620/804 (77%), Gaps = 5/804 (0%) Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215 +R+ +V EA +GL D S++ VL+E +N+YDG+ +L A I ++RTL+E+EPN Sbjct: 12 PIPWERVHRVVREAVAGLPDTSAEAVLAELKRNVYDGIRADELALAQIMAARTLVEREPN 71 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 Y+ V AR LL+ LR E + + +P++ + EM Y +YF Y+ G+ +LL E + Sbjct: 72 YSFVAARLLLDLLRGEATSYLADEPRQPDYAEMAAGYADYFRDYLRRGIDLQLLDEELAA 131 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKET 333 FDL LA L+ ERD LGLQ LYDRY L G R E+PQAFFMRVAMGLA++E Sbjct: 132 FDLDILAAALRPERDLDLGLLGLQTLYDRYLLRDPHAGIRFELPQAFFMRVAMGLAIREP 191 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 E++ RAVEFY LLS+ FM STPTLFN+GTR PQLSSCFLTTV DDL IF + NA+L Sbjct: 192 ERDTRAVEFYELLSTLRFMTSTPTLFNAGTRRPQLSSCFLTTVSDDLESIFTGYRNNALL 251 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 AKYSGGLGNDWTPVRGLGAHI GT GKSQGV+PFLK+ANDT VAVNQGGKRKGA CAYLE Sbjct: 252 AKYSGGLGNDWTPVRGLGAHIRGTGGKSQGVVPFLKIANDTTVAVNQGGKRKGAACAYLE 311 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 TWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PD F++RV +A WTLFSPDEV DLHDL Sbjct: 312 TWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFSPDEVPDLHDL 371 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG F Y YE+ AD G+I+VFR++SA LWR+MLTMLFETGHPWITFKDPCN+RSPQ Sbjct: 372 YGTAFAERYRAYEKAADAGQIRVFRRVSATQLWRRMLTMLFETGHPWITFKDPCNLRSPQ 431 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 QH GVVHSSNLCTEITLN+S +E AVCNLGS+NL H + D + L T+RTAVR+LD Sbjct: 432 QHAGVVHSSNLCTEITLNTSPDEIAVCNLGSVNLARHIGKDGLDVEALRKTVRTAVRMLD 491 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NVIDIN +T+ +A++SN HR +GLGLMGF AL L IP AS EAVE AD SME +S+H Sbjct: 492 NVIDINFYTVPEARRSNLRHRPVGLGLMGFTDALFELGIPQASDEAVEFADRSMEVLSYH 551 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKK 751 AISASVELA ERGAY SF GSLW +G+ P+DS+ LLAE R EL ++ +S L WD L++ Sbjct: 552 AISASVELAGERGAYPSFDGSLWSRGILPLDSLRLLAEARGEDELDIDTSSTLDWDALRE 611 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 RV+T+GMRNSN +AIAPTATI+NICGV QSI+P + NL+VKSNMSG+FTVVN +LV +LK Sbjct: 612 RVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNPYLVRDLK 671 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +R LWDE M+ +LK HDG +G IER+P++LKK++ATAFE D WL+++A+RRQKWIDQAQ Sbjct: 672 RRGLWDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDAAARRQKWIDQAQ 731 Query: 872 SLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 SLNLYL EPSG+ LD +YR AW GLKTTYYLRSR+AT VEKSTL+G DG+LNAV P Sbjct: 732 SLNLYLAEPSGRALDALYRHAWRRGLKTTYYLRSRAATQVEKSTLRGTDGRLNAVAPAVP 791 Query: 932 NSSTHSLGIPSSC-TSDTECEVCQ 954 + G ++C D +CE CQ Sbjct: 792 AVPADASGAAAACRIDDPDCEACQ 815 >gi|284043178|ref|YP_003393518.1| ribonucleoside-diphosphate reductase, subunit alpha [Conexibacter woesei DSM 14684] gi|283947399|gb|ADB50143.1| ribonucleoside-diphosphate reductase, alpha subunit [Conexibacter woesei DSM 14684] Length = 1091 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 412/953 (43%), Positives = 579/953 (60%), Gaps = 37/953 (3%) Query: 22 FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR---SIRVQDIIKNLTEQ 78 +++I+R+G VT+++P+KI AI KAF++++ + RV + L Sbjct: 156 AARPAGALRLIRRSGHVTAWEPAKIEVAIRKAFLSLQADSEPAVALAARVSERAHAL--- 212 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 V IE +QD V+ L+ +GH + Y++YR ERS +RA + Sbjct: 213 ----------GMAYVPIETVQDIVQEELVLAGHMRAAERYIVYRAERSLLRAQDAPVPGA 262 Query: 139 --APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSE 195 + P + ++ DGT + + L + A GL ++ + + E + + G+ Sbjct: 263 PGSGAQPPVPVIELDGTESLWGGEDLRARIAFAAIGLDLPLAPEELERELRRAIRPGIKR 322 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +DL + +++ L+E++ ++++ R LL + E L + ++ + Sbjct: 323 ADLRRLTVLNAKALVERDSDFSRFAGRILLSHVYEEALAWDIVRDG---VGALKAAHERG 379 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING---- 311 +E GV + ++ D+D+ LA L D F++LGLQ LYDRY + Sbjct: 380 LRALLEHGVAIGRIDPALHDYDVARLAAALDPTADLDFDFLGLQTLYDRYLIVDKKAAEP 439 Query: 312 SRIEMPQAFFMRVAMGLA-----LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 RIE PQ F+MRVAMG+ +E+RA++ Y + F STPTLFN+GT H Sbjct: 440 RRIETPQLFWMRVAMGVCLTARDGDPAAREERAIDLYTMYKQRRFCSSTPTLFNAGTPHS 499 Query: 367 QLSSCFLTTVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSC+L + D L I + ENAM +K++GGLG WT VRG G+HI TNG+SQGV+ Sbjct: 500 QLSSCYLYKIEDTLSSIVGRGIAENAMCSKWAGGLGGSWTAVRGTGSHIESTNGESQGVV 559 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 PFLK+ ND VAVNQGGKR G+ CAYLE WH D+ EFL+LR+NTGD+RRRTHDMNTANWI Sbjct: 560 PFLKMHNDQLVAVNQGGKRAGSGCAYLEVWHNDIREFLELRRNTGDERRRTHDMNTANWI 619 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PDLFMKRV WTLF ++V DLH+ YG++FE YE YE + D GE+ R I A+ L Sbjct: 620 PDLFMKRVEAREQWTLFRSNDVPDLHETYGRDFEARYEAYEARVDAGELHGER-IPAIEL 678 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W++ML +LFETGHPWITFKDPCN+RSPQ H GVVHSSNLCTEITLN+ +ETAVCNLGS+ Sbjct: 679 WKQMLKLLFETGHPWITFKDPCNVRSPQDHAGVVHSSNLCTEITLNTGPDETAVCNLGSV 738 Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 + H + D+ KL +TIR AVR LD+VID+N + E A+ +N HR +GLG+MG Q Sbjct: 739 VIDQHLDAAGEIDHAKLRATIRVAVRALDDVIDVNFYPTEPARTANGRHRPVGLGVMGLQ 798 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 AL+ + + SPEA+ DE ME I+F+A AS +LA ERG Y S+ GS WD+G+ P D Sbjct: 799 YALYRKGLAFGSPEALAFGDEMMEAIAFYAYEASSDLAAERGTYQSYAGSKWDRGLLPQD 858 Query: 725 SIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 ++ LL E R + + R R+ W L+ ++ GMRNSN +AIAPTATIANI G S I+ Sbjct: 859 TLDLLEEERGQPIEVERGGRMDWTPLRAKIAAQGMRNSNVLAIAPTATIANIMGTSPCIE 918 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P Y+NL+ KSN+SGDFT++N FLV +LK +W A+ LK +G + + +P L+ Sbjct: 919 PMYKNLFAKSNLSGDFTILNPFLVRDLKAAGVWSGALAERLKVVEGDLEQVPEVPAALRA 978 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ TAF+I+P LI++A+RRQKWIDQ+QSLNL+L P K + +YR+AW GLKTTYYL Sbjct: 979 LYRTAFQIEPERLIDAAARRQKWIDQSQSLNLFLAAPDLKAMSHMYRRAWHAGLKTTYYL 1038 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS--LGIPSSCTSDTECEVCQ 954 R+ A+++EK+T+ P + + + ECE CQ Sbjct: 1039 RTLGASAIEKATVAAPAAATVPAAAGMPTAPDAEALACSIEAMRNGEECEACQ 1091 Score = 50.6 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Query: 101 QVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSK 160 VE +L+ +GH+++ + VL R R + S A A L+++ G + ++ Sbjct: 124 LVEAALIDAGHYELAKALVLRRA-----RPSASGDDVAARPAGALRLIRRSGHVTAWEPA 178 Query: 161 RLEMIVEEACSGLQDVSSKIVLSET 185 ++E+ + +A LQ S V Sbjct: 179 KIEVAIRKAFLSLQADSEPAVALAA 203 >gi|326797772|ref|YP_004315591.1| ribonucleoside-diphosphate reductase, subunit alpha [Sphingobacterium sp. 21] gi|326548536|gb|ADZ76921.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobacterium sp. 21] Length = 792 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 294/815 (36%), Positives = 454/815 (55%), Gaps = 31/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S ++ +E+ C GL V V + + +YDG++ S+L+ Sbjct: 1 MYVIKRDGRSESVKFDKITARIEKLCYGLNPDLVDPIDVARKVIEGLYDGVTTSELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +L K P+YA + +R + L + + + + M LY + + Sbjct: 61 AETAASLTTKHPDYALLASRIAVSNLHKNTVKSFSET--------MSLLYHYIDPKTGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + L + + Y+RDF+F+Y G + L Y L +NG E PQ FM Sbjct: 113 APLIADDVYEVIQANAMELDSHIIYDRDFSFDYFGFKTLEKSYLLKLNGKIAERPQHLFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + ++ Y+LLS F +TPTLFN+GT PQ+SSCFL T+ DD + Sbjct: 173 RVAVGIH---KHDIESVIKTYDLLSERWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G VR GA+I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGAYISGTNGTSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV +F+DLRKN G + R D+ A W+PDLFMKRV +N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADVYDFIDLRKNHGKEELRARDLFLALWVPDLFMKRVEENGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSPDE L + +G+ FE YE YER E + + + A LW +L ETG P+ Sbjct: 350 LFSPDEAPGLAECHGEAFEKLYEQYER-----EGRARKIVKAQDLWFAILDAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S QQ++G + SSNLCTEI +S++E AVCNL S+ L + N +FD+ K Sbjct: 405 LLYKDAANGKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYVDNGEFDHQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L L+ +ID N + +++A+ SN HR +GLG+ G L+ +P+ S A Sbjct: 465 LFDITYQVTINLNRIIDNNYYPVDEARNSNLRHRPVGLGVQGLADTFILMRMPFESEAAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I F A++AS +LA + G Y SFKGS QG F D + + Sbjct: 525 QLNKDIFETIYFAAMTASKDLAVKEGPYESFKGSPLSQGKFQFDLWNVKPD--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W+ L+K +K G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 576 SGRWDWEGLRKEIKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN L+ +L + LW+ M + + +GSI +I IP D+K+++ T +EI +I+ A Sbjct: 636 IVNKHLLRDLVELGLWNNEMKNRIIAANGSIQDINEIPADIKELYKTVWEIKMRNIIDMA 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLNL+++ P+ KL ++ AW GLKT YYLR+++AT K T++ Sbjct: 696 ADRGAFICQSQSLNLFVNTPTTAKLTSMHFYAWKKGLKTGMYYLRTQAATQAVKFTVENQ 755 Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 GK + V S + + C+ + C C Sbjct: 756 AGKNMEPVIPAKIESVPDDIPTGAVCSMEEGCITC 790 >gi|149279600|ref|ZP_01885729.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp. BAL39] gi|149229636|gb|EDM35026.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp. BAL39] Length = 792 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 292/815 (35%), Positives = 439/815 (53%), Gaps = 31/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ +E+ C G V V + + +YDG++ S+L+ Sbjct: 1 MFVIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVIEGLYDGVTTSELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +L K P+YA + +R + L + K+ M+ LY + + Sbjct: 61 AETAASLTTKHPDYALLASRIAVSNLHKNT--------TKSFSKTMEMLYKYVDSKTDKS 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF F+Y G + L Y L I G +E PQ FM Sbjct: 113 ASLIADDVWEVIQENADILDSTIIYDRDFGFDYFGFKTLEKSYLLKIEGQIVERPQHLFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ A++ YNL+S F +TPTLFN+ T PQ+SSCFL T+ DD + Sbjct: 173 RVAVGIH---KSDIDSAIKTYNLMSERWFTHATPTLFNAATPKPQMSSCFLLTMQDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G +R G++I GTNG S G++P LKV NDTA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV FLDLRKN G + R D+ A W+ DLFMKRV N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADVFSFLDLRKNHGKEELRARDLFYALWVCDLFMKRVEANEDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G EFE YE YE+ E + + + A LW +L ETG P+ Sbjct: 350 LFCPHEAPGLADCFGDEFEALYERYEK-----EGRARKTVKAQELWFAILDSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S QQ++G + SSNLCTEI +S +E AVCNL S+ L N +FD+ K Sbjct: 405 LLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVINGEFDHQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L A L+ +ID N + +E+AK SN HR +GLG+ G A L+ +P+ S A Sbjct: 465 LYDVTYQATLNLNKIIDYNYYPVEEAKNSNMRHRPVGLGVQGLADAFILMRLPFESDGAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E E I F A++AS +LA G Y +FKGS QG F D + + Sbjct: 525 LLNKEIFETIYFAAMTASHDLAVVNGPYQTFKGSPLSQGKFQFDLWNVTPD--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W+ L+++V G+ NS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 576 SGRWDWESLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFI 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L LW AM + +GSI +I IPD +K+++ T +EI +I+ A Sbjct: 636 VVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSIIDMA 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLNL+++ P+ KL ++ AW GLKT YYLR+++A+ K T++ Sbjct: 696 ADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTVENQ 755 Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 GK + V + + C+ + C C Sbjct: 756 AGKNMEPVIPDHIDQPVEEITDGPVCSMEEGCISC 790 >gi|312130871|ref|YP_003998211.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella byssophila DSM 17132] gi|311907417|gb|ADQ17858.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella byssophila DSM 17132] Length = 820 Score = 730 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 294/843 (34%), Positives = 447/843 (53%), Gaps = 59/843 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S ++ +E C GL V V + +YDG++ S+L+T Sbjct: 1 MFVVKRDGRRESVKFDKITARIERLCYGLDPYFVQPVEVAMKVVAGIYDGVTTSELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ K P+YA + AR + L + L + M+ LY + E Sbjct: 61 AETAASMTTKHPDYAILAARVAISNLHKNTLKSFSGT--------MKLLYQYVDPKTGEN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF +++ G + L Y + +NG +E PQ M Sbjct: 113 AALISKETWKIIQANAALLDSSIIYDRDFGYDFFGYKTLEKSYLMKLNGKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E ++A+E YNLLS F +TPTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVAVGIHG---ENIEKAIETYNLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G VR G++I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH D+ EFL+L+KN G + R D+ A W PDLFMKRV NA W+ Sbjct: 290 GGKRKGSFAIYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANADWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D YG++FE Y YE E K + I A LW ++L ETG P+ Sbjct: 350 LFCPHECPGLADTYGEDFERLYTKYEA-----EGKARKTIPAQELWFQILESQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQF 616 + +KD N +S Q+++G + SSNLCTEI ++ +E AVCNL SI L F Sbjct: 405 MLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVNTEGPAPSF 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL + R L+ +IDIN + + +A+ SN HR IGLG+ G A L+ P+ S Sbjct: 465 DFQKLYEVTKVVTRNLNRIIDINYYPVPEAENSNKRHRPIGLGIQGLADAFILMRFPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ + E + F A+ S+ELA+E G YSSF+GS +G+F D + + Sbjct: 525 EEAQKLNRDVFETLYFAAMETSMELAKEEGPYSSFEGSPISKGIFQFDMWDVTPD----- 579 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + W++L+K+V G+RNS +A PTA+ + I G ++ +P N+Y + +S Sbjct: 580 ----SGLWDWEDLRKKVMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLS 635 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN L+ +L + LW++ M + L +GS+ I IP+DLK ++ TA+EI + Sbjct: 636 GEFVVVNKHLLRDLVKIGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAWEIKQKSI 695 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ ++ R +I Q+QSLN+++ +P+ KL ++ AW GLKT YYLR+++A K T Sbjct: 696 IDMSADRGAYICQSQSLNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAAADAVKFT 755 Query: 916 LKGVDGKLNAVPVTD-------------------------PNSSTHSLGIPSSCTSDTEC 950 + + + S + C Sbjct: 756 VDRQAIAETSPVTETIQEKPLDYKGYAKEQAEKAAASFQMTEEEQKYAAMQCSLDNPEGC 815 Query: 951 EVC 953 E+C Sbjct: 816 EMC 818 >gi|312889902|ref|ZP_07749446.1| ribonucleoside-diphosphate reductase, alpha subunit [Mucilaginibacter paludis DSM 18603] gi|311297434|gb|EFQ74559.1| ribonucleoside-diphosphate reductase, alpha subunit [Mucilaginibacter paludis DSM 18603] Length = 792 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 289/815 (35%), Positives = 445/815 (54%), Gaps = 31/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ +E+ C GL V V + + +YDG++ S+L+ Sbjct: 1 MFVIKRDGKKETVKFDKITARIEKLCYGLNPSLVDPIDVSKKVVEGLYDGVTTSELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +L K P+YA + +R + L + K+ M+ LY + + Sbjct: 61 AETAASLTTKHPDYALLASRIAVSNLHKNT--------IKSFSETMRNLYLYTDKKTGKN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF F+Y G + L Y L I+G E PQ FM Sbjct: 113 ASLIADDVWQAIEANAELLDSTIIYDRDFGFDYFGFKTLEKSYLLKIDGKIAERPQHLFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E ++ YNL+S F +TPTLFN+GT PQ+SSCFL T+ DD + Sbjct: 173 RVSVGIH---KEDIDSVIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLLTMQDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G VR G++I GTNG S G+IP LKV NDTA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIIPMLKVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A WI DLFM+RV ++ W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWICDLFMQRVEEDGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E LH+ +GKEFE Y YE E + + I A LW +L ETG P+ Sbjct: 350 LFCPHEAPGLHECWGKEFEALYTKYEA-----EGRARKTIRAQELWFAILDAQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S QQ++G + SSNLCTEI +S++E AVCNL S+ L + FD+ K Sbjct: 405 LLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYITAGVFDHQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L L+ +ID N + + +A SN HR IGLG+ G L +P+ S EA Sbjct: 465 LYEVTYQVTLNLNKIIDHNYYPVVEASNSNFRHRPIGLGVQGLADTFIRLRLPFESDEAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ E E I F A++AS +LA + G Y +FKGS QG F D + + Sbjct: 525 KLNKEIFETIYFAAMTASKDLAIQDGPYETFKGSPLSQGKFQFDLWNVTPD--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W++L+ V G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 576 SGRWNWEDLRSDVMNHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +L+++L + LW+ M + + +GS+ +I IP ++K+++ T +EI +I+ A Sbjct: 636 VVNKYLLHDLVELGLWNNDMKNQIISANGSVQDIPEIPAEIKELYKTVWEIKMRTIIDMA 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R ++ Q+QSLNL++ P+ KL ++ AW GLKT YYLR+++A+ K T++ Sbjct: 696 ADRGAYVCQSQSLNLFISSPNASKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTIESQ 755 Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 GK + V + + + C+ + C C Sbjct: 756 GGKSMEPVIPENGVAVVDEIPDGPVCSMEEGCVTC 790 >gi|255530603|ref|YP_003090975.1| ribonucleoside-diphosphate reductase subunit alpha [Pedobacter heparinus DSM 2366] gi|255343587|gb|ACU02913.1| ribonucleoside-diphosphate reductase, alpha subunit [Pedobacter heparinus DSM 2366] Length = 792 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 291/815 (35%), Positives = 444/815 (54%), Gaps = 31/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ +E+ C G V V + + +YDG++ S+L+ Sbjct: 1 MFVIKRDGRKEAVRFDKITARIEKLCYGFNAELVDPIDVAKKVIEGLYDGVTTSELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +L K P+YA + +R + L + + K M+ LY + + Sbjct: 61 AETAASLTTKHPDYALLASRIAVSNLHKNTTKSFSKT--------MEMLYNYVDSKTEKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF F+Y G + L Y L ++G +E PQ FM Sbjct: 113 ASLIADDVWEVIEKNADILDSTIIYDRDFGFDYFGFKTLEKSYLLKVDGQIVERPQHLFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ A+E YNL+S F +TPTLFN+ T PQ+SSCFL T+ DD + Sbjct: 173 RVAVGIH---KGDIDSAIETYNLMSERWFTHATPTLFNAATPKPQMSSCFLLTMQDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G +R G++I GTNG S G++P LKV NDTA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNIRATGSYIGGTNGTSNGIVPMLKVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV FLDLRKN G + R D+ A W+ DLFM+RV +N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADVLSFLDLRKNHGKEELRARDLFYALWVCDLFMRRVEENGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G+EF+ YE YE+ E + + I A LW +L ETG P+ Sbjct: 350 LFCPHEAPGLADCFGEEFDALYERYEQ-----EGRARKTIKAQELWFAILDSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S QQ++G + SSNLCTEI +S +E AVCNL S+ L N +FD+ K Sbjct: 405 LLYKDAANSKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFVINGEFDHQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L A L+ +ID N + +E+A+ SN HR +GLG+ G A L+ +P+ S A Sbjct: 465 LYDVTYQATVNLNKIIDYNYYPVEEARNSNMRHRPVGLGVQGLADAFILMRLPFESEGAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E E I F A++AS +LA + G Y +FKGS QG F D + + Sbjct: 525 ILNKEIFETIYFAAMTASHDLAVKNGPYETFKGSPLSQGKFQFDLWKVQPD--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W+ L+++V G+ NS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 576 SGRWDWETLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFI 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L LW AM + +GSI +I IPD +K+++ T +EI +I+ A Sbjct: 636 VVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSIIDMA 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLNL+++ P+ KL ++ AW GLKT YYLR+++A+ K T++ Sbjct: 696 ADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTVENQ 755 Query: 920 DGK-LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 GK + V S + C+ + C C Sbjct: 756 AGKNMEPVIPEHIEQSAEEIVEGPVCSMEEGCISC 790 >gi|289677033|ref|ZP_06497923.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. syringae FF5] Length = 762 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 425/754 (56%), Positives = 542/754 (71%), Gaps = 5/754 (0%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 ++ G A + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 8 ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++ + P ++I DG+ + RL IV EAC GL +V + ++ +E Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L AT Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 246 HHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGV 425 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTANW Sbjct: 426 VPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANW 485 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISAV 543 IPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 486 IPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAK 545 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNLG Sbjct: 546 DLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLG 605 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL H + + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MGF Sbjct: 606 SINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGF 665 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+L HIPY S AV+ AD SME +S++AI AS +LA ERGAY +F+GSLW +G+ P+ Sbjct: 666 QDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPL 725 Query: 724 DSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKT 755 DS +L E R ++++ L W ++ RV+ Sbjct: 726 DSQQILIEQRGEKYISVDLKETLDWAPVRARVQK 759 >gi|110636873|ref|YP_677080.1| ribonucleoside diphosphate reductase subunit alpha [Cytophaga hutchinsonii ATCC 33406] gi|110279554|gb|ABG57740.1| ribonucleoside diphosphate reductase, alpha subunit [Cytophaga hutchinsonii ATCC 33406] Length = 794 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 300/817 (36%), Positives = 452/817 (55%), Gaps = 33/817 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S ++ +E C GL V V +YDG++ +L+ Sbjct: 1 MLVLKRDGRRESVKFDKITSRIERLCYGLDMNYVDPTSVAKRVIDGLYDGVTTEELDHLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ K P+YA + AR + L ++ K+ + M+ LY + E Sbjct: 61 AETAASMTTKHPDYATLAARIAVSNLHKKT--------SKSFANTMKRLYTYVDPKTGEN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + L + + Y+RD+ ++Y G + L Y L ++G +E PQ M Sbjct: 113 ASMISNEVYEFIRKNAAILDSAIIYDRDYGYDYFGFKTLEKSYLLKVDGKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV+ G+ + A+E YNL+S F +TPTLFNSGT PQLSSCFL T DD + Sbjct: 173 RVSCGIHSGD---IDAAIETYNLMSERWFTHATPTLFNSGTPKPQLSSCFLLTTQDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G +R G++I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYETLKQCAKISQSAGGIGLSIHNIRATGSYIKGTNGTSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV EFLDLRKN G + R D+ A WI DLFMKRV +N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D YGK+FE YE YE+ E + + I A LW +L ETG P+ Sbjct: 350 LFCPHEAPGLADCYGKDFEALYEKYEK-----EGRARKTIKAQELWFAILEAQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S Q+++G + SSNLCTEI +S EE AVCNL S+ L N +FD+ K Sbjct: 405 MLYKDAANRKSNQKNLGTIKSSNLCTEIMEFTSPEEVAVCNLASLALPKFVINGKFDHQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L A + L+ +ID+N + + +A++SN HR IGLG+ G A LL +P+ S EA Sbjct: 465 LYDVTYVATKNLNKIIDVNYYPVPEAERSNKRHRPIGLGVQGLADAFILLRMPFESDEAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A++AS +LA++ G Y +FKGS +G+F D G+ Sbjct: 525 QLNIDIHETIYYAAMTASKDLAEKLGPYETFKGSPVSKGIFQFDMWGVTPA--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W+ LK+ VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 576 SGRYDWEALKREVKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L + +LWD+ M + L +GS+ NI IP ++K ++ TA+EI LI+ + Sbjct: 636 VVNKHLLKDLIKLNLWDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAWEIKGKTLIDMS 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLN+++ E + KL ++ AW GLKT YYLR++SA + + T++ Sbjct: 696 ADRGAYICQSQSLNIFMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSAANAIQFTVEKQ 755 Query: 920 DGKLNAVPVTDP---NSSTHSLGIPSSCTSDTECEVC 953 A TD ++ + + S + CE C Sbjct: 756 AEVQLAPGTTDQSIVDAEKKAKDMACSLDNPEGCESC 792 >gi|196012349|ref|XP_002116037.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens] gi|190581360|gb|EDV21437.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens] Length = 780 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 286/815 (35%), Positives = 438/815 (53%), Gaps = 43/815 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ V + C L V + + +Y+G++ +L+T Sbjct: 1 MYVVKRDGRKEKVMFDKITSRVSKLCYNLNNDHVDPAAITMKVIAGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + ++ P+YA + AR + L +E T M LY + + Sbjct: 61 AEIAASMTTNHPDYALLAARIAVSNLHKETKKTFSVV--------MDELYNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RD+ + + G + L Y L I+ E PQ M Sbjct: 113 SPMISKETHEIITKHCERLNSAIIYDRDYNYNFFGFKTLERSYLLKIDKKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNL+S F ++PTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVSVGIHG---EDIDGAIETYNLMSERWFTHASPTLFNAGTCRPQLSSCFLLTMSDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGLSVHCIRSSGSYIAGTNGHSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +FLDL+KNTG + +R D+ A W+PDLFMKRV +N W+ Sbjct: 290 GNKRPGAFAIYLEPWHPDIFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENGVWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P++ LHD YG+EFE Y YE K R++ A LW +L ETG P+ Sbjct: 350 LMCPNDCPGLHDTYGEEFEKLYTEYEDA-----GKFIRQVRAQKLWFAILEAQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619 + +KD CN +S Q+++G + SSNLCTEI +S +E AVCNL SI L ++ FD+ Sbjct: 405 MLYKDACNRKSNQKNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPRFVRPDKTFDFH 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + R L+ +IDIN + + +A+KSN HR IG+G+ G A L+ P+ PEA Sbjct: 465 KLAEVTKVITRNLNKIIDINFYPVPEAEKSNKRHRPIGIGVQGLADAFILMRFPFDGPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ + E I + A+ AS ELA+E G Y +++GS QG D Sbjct: 525 RDLNIKIFESIYYGALQASCELAKEVGPYETYEGSPASQGQLQFDLW----------EKQ 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W+ LK+ +K G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 PTDLWNWNSLKEDIKKYGLRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L +W++ M ++L ++GSI I IPDD+K ++ T +EI LI+ Sbjct: 635 QVVNQHLLKDLTDMGVWNDMMKNELIANNGSIQKINNIPDDIKALYKTVWEISQRTLIDM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QS N+++ EP+ KL ++ AW GLKT YYLR++ A S + T+ Sbjct: 695 AADRGAYIDQSQSFNVHIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAASAIQFTVDK 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + + S + C +C Sbjct: 755 EKLQKDR-----------ESAMVCSLENKEACLMC 778 >gi|124003381|ref|ZP_01688231.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla marina ATCC 23134] gi|123991479|gb|EAY30910.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla marina ATCC 23134] Length = 808 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 300/831 (36%), Positives = 456/831 (54%), Gaps = 47/831 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++++ DG S ++ +E+ L V V + +YDG++ +L+ Sbjct: 1 MQVIKRDGRRESVRFDKITARIEKLSYSLARDYVQPVEVAKKVITGIYDGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L + K M+ LY + E+ Sbjct: 61 AETAATMAIKHPDYAILAARIAISNLHKTT--------SKVFSKTMKELYEYIDPKTGEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + L + + Y+RD+ ++Y G + L Y L ++G +E PQ M Sbjct: 113 AGLISDETHAAIQKNAAVLDSSIIYDRDYNYDYFGFKTLERSYLLKMDGQVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E + +E Y LLS F +TPTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVAVGIHG---EDVDKVLETYELLSGKWFTHATPTLFNAGTPKPQLSSCFLLTMQDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G VR G++I GTNG S GVIP LKV NDTA V+QG Sbjct: 230 GIYDTLKQCAKISQSAGGIGLSIHNVRATGSYIKGTNGTSNGVIPMLKVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDL+KN G + R D+ A W+ DLFMKRV + W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLKKNHGKEELRARDLFYAMWLSDLFMKRVENDDTWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E LH++YG+EFE YE YE E + + I A LW K+L ETG P+ Sbjct: 350 LFCPNEAPGLHEVYGEEFEKLYEQYE-----LEGRARKVIKAQDLWFKILESQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L + +FD+ K Sbjct: 405 MLYKDAANEKSNQKNLGTIKSSNLCTEIMEYTSKDEVAVCNLASIALPKFVIDGKFDHQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ +IDIN + +++A+ SN HR IG+G+ G +L +P+ S EA Sbjct: 465 LYEVTQVVTRNLNRIIDINYYPVKEAENSNLRHRPIGIGVQGLADTFMMLRMPFDSEEAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E I F +++AS+ELAQ+ GAY S+KGS +G+F D G+ E Sbjct: 525 GLNKDIFETIYFASMTASMELAQKEGAYESYKGSPVSEGIFQFDMWGVKPE--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W L+K VK G RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 576 SGRWDWQALRKDVKKHGARNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+N+L + +LW M + +K +GS+ NI IP +LK I+ T +EI +++ A Sbjct: 636 VVNKHLLNDLVELNLWGGDMENRIKAANGSVQNIPEIPQNLKDIYKTVWEIKQKDVVDMA 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG- 918 + R +I Q+QSLN++++ P+ KL ++ AW GLKT TYYLR+++A + T++ Sbjct: 696 ADRGAFICQSQSLNIHMENPTFGKLTSMHFYAWKKGLKTGTYYLRTKAAAKAIQFTVEKK 755 Query: 919 ----VDGKLNAVPV------------TDPNSSTHSLGIPSSCTSDTECEVC 953 GK+N S +++ + D +C+ C Sbjct: 756 YQEESKGKINGQADLVATTASASAHQNGSVSEEYNVEGQNCSIDDPDCDSC 806 >gi|213512716|ref|NP_001133985.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar] gi|209156060|gb|ACI34262.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar] gi|223648756|gb|ACN11136.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar] Length = 792 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 285/816 (34%), Positives = 441/816 (54%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGREERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + TL K P+YA + AR + L +E +K ++ LY Sbjct: 61 AEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVVEDLYNYVNPLNRCH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + ++RDF++ + G + L Y L ING E PQ M Sbjct: 113 SPMVAKETLDIVLENKDRLNSAIIFDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ +E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIHQ---TDIDAVIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +FLDL+KNTG + +R D+ WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAMYLEPWHFDVFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P + L + +G+EFE Y YE+ E +V R + A +W ++ ETG P+ Sbjct: 350 LMCPSDCPGLDECWGEEFEKLYTRYEQ-----EGRVKRVVKAQQVWHAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SSNLCTEI +S +E AVCNL SI L + FD+ Sbjct: 405 MLYKDACNRKSNQQNLGTIKSSNLCTEIVEYTSHDEVAVCNLASIALNMYVTPERTFDFS 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +I+IN + + +A+ SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAYVTKVIVRNLNKIIEINYYPVVEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ + E I + A+ +S ELA E GAY ++ GS +G+ + Sbjct: 525 QKLNTQIFETIYYAALESSCELAAELGAYETYPGSPVSKGILQYNMWDKTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+ + G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWTLLKENIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + L +GSI I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWEISQKTILKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR++ A + + TL Sbjct: 695 AADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNK 754 Query: 919 VDGKLNAVPVT-DPNSSTHSLGIPSSCTSDTECEVC 953 K + + + + S + +C +C Sbjct: 755 EKLKESQSAKNLEALKELNRAAMVCSLENRDDCLMC 790 >gi|260789736|ref|XP_002589901.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae] gi|229275086|gb|EEN45912.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae] Length = 787 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 285/815 (34%), Positives = 446/815 (54%), Gaps = 36/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ +++ C GL V + + +Y G++ +L+T Sbjct: 1 MYVLKRDGRQEKVHFDKITSRIQKLCYGLNMDFVDPTKITMKVINGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L +E +KA M+ LY + + Sbjct: 61 AETAATMTVKHPDYATLAARIAISNLHKET--------KKAFTDVMEDLYNWVNPKTNQH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF + Y G++ L Y L I+G E PQ M Sbjct: 113 SPMISKKLMDLVTKNADRLNSAIIYDRDFKYTYFGIKTLERSYLLRIDGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E A+E YNL+S F ++PTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVALGIHY---EDLDAAIETYNLMSEKKFTHASPTLFNAGTNKPQLSSCFLLTMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G+ I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYETLKQCALISKSAGGIGVNIHKIRASGSFIAGTNGTSNGLLPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLD RKNTG + +R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAMYLEPWHADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEENGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D +G+EFE YE YE+ K R + A +W ++ ETG+P+ Sbjct: 350 LMCPHECPGLEDCWGEEFEKLYEGYEKA-----GKGRRTVKAQQVWYAIIEAQTETGNPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL SI + + + +D++ Sbjct: 405 MLYKDACNSKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIAVNMYVKPDGTYDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL R L+ +ID+N + + +A+ SN HR IG+G+ G L+ P+ S EA Sbjct: 465 KLKEVTVVITRNLNKIIDVNYYPVPEAENSNKKHRPIGIGVQGLADCFILMRYPFESEEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS E+A+E G Y +++G +G+F D + Sbjct: 525 QHLNKQIFETIYYGAMQASCEIAKELGPYETYEGCPVSKGIFQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK++VK G+RNS +A PTA+ A I G ++SI+ N+Y + +SG+F Sbjct: 576 -TDLWDWAALKEQVKQHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L + LW+E M + + ++GS+ NIE IP+ ++ ++ T +EI +I+ Sbjct: 635 QVVNHHLMTDLTELGLWNEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWEISQKTVIKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ K+ ++ W +GLKT YYLR+R A++ + T+ Sbjct: 695 AADRGAFIDQSQSLNIHIGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPASNPIQFTVDK 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T + S + EC +C Sbjct: 755 SK----LAQSTKAEKEKQLEAMVCSLENKDECLMC 785 >gi|255037023|ref|YP_003087644.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter fermentans DSM 18053] gi|254949779|gb|ACT94479.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter fermentans DSM 18053] Length = 814 Score = 720 bits (1858), Expect = 0.0, Method: Composition-based stats. Identities = 288/837 (34%), Positives = 452/837 (54%), Gaps = 53/837 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S ++ +E+ GL V V + +YDG++ ++L+ Sbjct: 1 MYVIKRDGRRESVKFDKVTARIEKLSYGLDATYVQPVEVAKKVVSGIYDGVTTAELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ K P+YA + AR + L + L K+ M+ LY + E Sbjct: 61 AETAASMTTKHPDYAILAARVAISNLHKNTL--------KSFSATMKRLYTYIDSKTGEN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RD++++Y G + L Y L + G +E PQ M Sbjct: 113 ASLISREVYEVIRQNASLLDSTIIYDRDYSYDYFGYKTLEKSYLLKVEGKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ E + A+E Y+LLS F +TPTLFN+GT PQ+SSCFL T+ D + Sbjct: 173 RVAIGIHQ---EDVQAAIETYHLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKEDSIN 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A++++ +GG+G VR G +I GTNG+S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKNCALISQSAGGIGLSIHDVRATGTYIKGTNGQSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ Y+E WH D+ +FLDL+KN G + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GGKRKGSFAIYIEPWHSDIFDFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVEANDTWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D + +EFE YE YER E + + I A LW ++ ETG P+ Sbjct: 350 LFCPHECPGLADTHSEEFEKLYEQYER-----EGRARKTIKAQDLWFAIMESQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + +KD N +S QQ++G + SSNLCTEI ++ +E AVCNL SI L Sbjct: 405 MLYKDHANSKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVEQGADGFMH 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ KL + R L+ +ID+N + + +A+KSN HR IG+G+ G A ++ +P+ Sbjct: 465 FDHQKLYEITKVVTRNLNKIIDLNFYPVPEAEKSNKRHRPIGIGVQGLADAFCMMRMPFD 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + E I + ++ AS+ELA + G Y ++ GS QGVF D + E + Sbjct: 525 SDEARRLNKDIFETIYYGSMEASMELAMQNGPYETWAGSPISQGVFQFDMWNVTPESK-- 582 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 R W++L+K V G+RNS +A PTA+ + I G ++ +P N+YV+ + Sbjct: 583 -------RWNWEKLRKEVVQNGVRNSLLLAPMPTASTSQILGNNECFEPFTSNIYVRRVL 635 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +L+ +L + LW E M ++L GS+ I IP ++K ++ TA+EI Sbjct: 636 SGEFVVVNKYLLKDLVRLGLWSEEMKNNLVRASGSVQAIPNIPQNIKDLYKTAWEIKQRS 695 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 L++ ++ R +I Q+QSLN++++E + KL ++ AW GLKT YYLR+R+A+ + Sbjct: 696 LLDMSADRGAYICQSQSLNIFMEEANFGKLTSMHFYAWKKGLKTGMYYLRTRAASDPVQF 755 Query: 915 TLKG-------------VDGKLNAVPVTDPNSSTHS-----LGIPSSCTSDTECEVC 953 T+ + +LN V + ++ + + S CE C Sbjct: 756 TVSKQAEPQLEPATAVVAEKELNYVQYAEEHAKPAAPRDNRSDMQCSLDDPEGCEAC 812 >gi|298243908|ref|ZP_06967715.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter racemifer DSM 44963] gi|297556962|gb|EFH90826.1| ribonucleoside-diphosphate reductase, alpha subunit [Ktedonobacter racemifer DSM 44963] Length = 846 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 461/825 (55%), Positives = 584/825 (70%), Gaps = 24/825 (2%) Query: 152 GTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 G +S+ + I+EE C G +V+ + Y G+S+++L ALI ++RT I Sbjct: 24 GATSPSDSQAVLRILEEVCQGFGPEVNVDQLFQSVNATTYAGISDAELWQALIMATRTNI 83 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 E EP Y V AR LL L E L+T + + ++ +Y Y Y+E GV L Sbjct: 84 EFEPAYTFVAARLLLISLYNEALST--TQATRVGLNDAASIYKNYLSDYVEFGVSKGYLD 141 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 ++DL+ LA+ + ERD F Y GLQILYDRYFL N R E+PQ +MRVAMGLA Sbjct: 142 PRFQEYDLIELASAIHPERDQLFAYQGLQILYDRYFLQDNNRRFELPQLLWMRVAMGLAF 201 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 E KE RA+EFY LLS F+F +TPTLFN+GT HPQLSSC+LTTV DDL+ IF +Q+N Sbjct: 202 NEEHKEARAIEFYELLSQFYFTSATPTLFNAGTTHPQLSSCYLTTVDDDLFHIFKCIQDN 261 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A+L+K++GGLGNDWT VR LGAHI GTNG SQG+IPFLKV NDTAVAVNQGGKRKGAVCA Sbjct: 262 ALLSKWAGGLGNDWTRVRALGAHIKGTNGISQGIIPFLKVVNDTAVAVNQGGKRKGAVCA 321 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 Y+E WH+D+EEFLDLRKNTGDDRRRTHDM+TA WI DLFMKRV +N WTLFSPD VSDL Sbjct: 322 YIENWHLDIEEFLDLRKNTGDDRRRTHDMHTACWISDLFMKRVERNEQWTLFSPDVVSDL 381 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 HDLYGK FE YE YER + G+I +R++SA+ LWRKMLT LFETGHPWITFKDP N+R Sbjct: 382 HDLYGKAFEQRYEEYERMVEAGQITHYRRVSALDLWRKMLTRLFETGHPWITFKDPSNVR 441 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 SPQ H GVVHSSNLCTEI LN+S++ETAVCNLGSINL AH + + ++++L T+RTAVR Sbjct: 442 SPQDHAGVVHSSNLCTEILLNTSNDETAVCNLGSINLAAHIIDGKLNHERLQKTVRTAVR 501 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVIDIN + ++A+ +N HR +GLGLM FQ AL+ L + YAS A+E AD SME I Sbjct: 502 MLDNVIDINYYPTDEARNANLRHRPVGLGLMAFQDALYKLGVSYASEAAIEFADRSMEAI 561 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749 S++AI AS ELA E G Y S++GS WD+G+ PIDSI +L E R ++ M+R+ L WD++ Sbjct: 562 SYYAILASSELATEHGTYGSYQGSKWDRGILPIDSIAILEEERGQKIDMDRSMTLDWDKV 621 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + VK GMRNSN MAIAPTATI++I GVSQSI+PSY+NLYVKSN+SG+FT++NSFLV++ Sbjct: 622 RTAVKQNGMRNSNVMAIAPTATISSIVGVSQSIEPSYKNLYVKSNLSGEFTIINSFLVDD 681 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 LK+ ++WD + LKY+DGS+ + +P+++++ + TAF+I+P WLI ASRRQKWID Sbjct: 682 LKRLEIWDRNTLEALKYYDGSLQEMTFLPEEIRQRYLTAFDIEPRWLIACASRRQKWIDM 741 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK------------ 917 QS++LYL PSGKKL +Y+ AW GLKTTYYLR+ +AT VEKST+ Sbjct: 742 GQSIDLYLYNPSGKKLSDVYQLAWNSGLKTTYYLRTLAATQVEKSTVDINRFGIQPRWMK 801 Query: 918 --------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V+ + A G + C +CE CQ Sbjct: 802 NSSPSSNIQVERENQAQQPKPTPIPLELSGEGAVCNLGDDCEACQ 846 >gi|256072094|ref|XP_002572372.1| ribonucleoside-diphosphate reductase alpha subunit [Schistosoma mansoni] gi|238657529|emb|CAZ28603.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Schistosoma mansoni] Length = 837 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 287/853 (33%), Positives = 453/853 (53%), Gaps = 52/853 (6%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMY 190 + K+ ++ DG + + +++ + C GL + + + V +Y Sbjct: 5 QKLLREFSGIDKIYVVKRDGRNEAIHCEKITKRIRAMCYGLNESYIDVEAVTKRVVSGLY 64 Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 G++ +L+ + ++I K YA + AR + L +E + + Sbjct: 65 PGVTTVELDNLAAETCASMITKHHEYAILAARLAVSNLHKETKSRFSDVVE--------D 116 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 LY R + + + L + + Y+RD+ + Y G + L Y L IN Sbjct: 117 LYCYINPRTKKHSPLVSKSLRDFVRENAGRLNDAIDYQRDYTYNYFGFKTLERSYLLKIN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 G E PQ MRV++G+ T A+E YNL+S F ++PTLFN+GT PQLSS Sbjct: 177 GKVHERPQHMLMRVSIGIH---TSDIDSAIETYNLMSEKWFTHASPTLFNAGTPKPQLSS 233 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL T+ DD + GI+ L+E A+++K +GG+G + +R LG +I GTNG+S G++P L+ Sbjct: 234 CFLITMKDDSIEGIYDTLKECAVISKNAGGIGLNVHNIRSLGTYIAGTNGESNGIVPMLR 293 Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 V N TA V+QG KR GA YLE WH DV +F+++RKNTG + R D+ A WIPDL Sbjct: 294 VFNSTARYVDQGGNKRPGAFAMYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDL 353 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV N WTL P E L +++G++F+ YE YER E + + + A LW Sbjct: 354 FMRRVESNDKWTLMDPHECPGLPEVWGEDFDTLYEKYER-----EGRGRQTVKAQELWYA 408 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 ++ ETG+P++ +KD CN +S QH+G + SNLCTEI SS +ETAVCNL SI+L Sbjct: 409 IIECQIETGNPFMLYKDSCNRKSNHQHLGTIRCSNLCTEIVEYSSPDETAVCNLASISLG 468 Query: 609 AHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + FD+ KL + R L+ VID+ + +E+A++SN HR IG+G+ G A Sbjct: 469 KFVNRDNLTFDFAKLQEVTKVVTRNLNKVIDVTFYPVEEARRSNMRHRPIGIGVQGLADA 528 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 LL P+ SPEA ++ E + F ++ AS +LA ++G Y S++GS +G+ D Sbjct: 529 FCLLRYPFDSPEAADLNKRIFETMYFASLDASCQLAVDQGTYESYQGSPVSKGILQPDMW 588 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 G+ E +++ S L W L+ R+ G+RNS +A PTA+ + I G ++S +P Sbjct: 589 GVDTEE-----LSKVSGLDWSGLRARINKYGLRNSLLLAPMPTASTSQILGNNESTEPFT 643 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 N++ + +SG+F +VN +L+++L + +LW E + + + + GSI +I+ IP +LK ++ Sbjct: 644 SNVFSRRVLSGEFQIVNPYLLDDLTKLELWSEELKTAIVLNQGSIQHIDGIPKELKPLYK 703 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 T +EI +I+ A+ R +IDQ+QSLNL+L +P+ K+ ++ AW GLKT YYLR+ Sbjct: 704 TVWEISQKKIIDMAAGRAPFIDQSQSLNLHLAQPNYGKITSMHFYAWRKGLKTGMYYLRT 763 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS------------------------LGIP 941 R A K ++ ++ T N ++ I Sbjct: 764 RPAADPIKFSVDKTILRVLTDSTTKTNEPQNNDSIDQTVEAIEELRIIEEIQKRNLDSIA 823 Query: 942 SSCTSDTECEVCQ 954 S + C CQ Sbjct: 824 CSLNNPEGCLSCQ 836 >gi|256421018|ref|YP_003121671.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga pinensis DSM 2588] gi|256035926|gb|ACU59470.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga pinensis DSM 2588] Length = 802 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 292/826 (35%), Positives = 446/826 (53%), Gaps = 43/826 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ VE+ C GL + V + V + + +YDG++ S+L+ Sbjct: 1 MFVIKRDGHKEAVKFDKITARVEKLCYGLNAEYVDAIDVAKKVIQGLYDGVTTSELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +L K P+YA + +R + L + + + K M+ LY + + Sbjct: 61 AETAASLTTKHPDYALLASRIAVSNLHKNTVKSFSKT--------MENLYNYIDPKVGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDFAF+Y G + L Y L ++G E PQ FM Sbjct: 113 APLLADDVYEIVMKHAAILDSSIIYDRDFAFDYFGFKTLERSYLLKLDGKVAERPQHMFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E ++ YNL+S F +TPTLFN+GT PQ+SSCFL T+ DD + Sbjct: 173 RVSVGIH---KEDIDAVIKTYNLMSERWFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G +R G++I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNIRATGSYISGTNGTSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV +N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRRVEENGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E LH+ +G+EFE Y YE+ E + + + A LW +L ETG P+ Sbjct: 350 LFCPHEAPGLHECWGEEFEKLYTKYEK-----ENRARKTVKAQDLWFAVLDAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S QQ++G + SSNLCTEI + + E AVCNL S+ L + QFD++K Sbjct: 405 LLYKDSANRKSNQQNLGTIKSSNLCTEIIEYTDANEVAVCNLASLALPRFVIDGQFDHEK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L A L+ +ID N + +++A+ SN HR IGLG+ G A L+ P+ S EA Sbjct: 465 LYEVTYQAALNLNRIIDNNFYPVDEARNSNLRHRPIGLGVQGLADAFILMRYPFESEEAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ E E I F A++AS +LA + GAY ++ GS +G+ D G+ R Sbjct: 525 KLNSEIFETIYFAALNASKDLAIKDGAYETYAGSPVSKGILQFDMWGVTPSPR------- 577 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W LK +K G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 578 ---WDWTSLKGEIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFV 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L + LWD M + + +GSI +I IP +K+++ T +EI +I+ A Sbjct: 635 VVNKHLLKDLVELGLWDNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWEIKQRTIIDMA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLNL++D PS KL ++ AW GLKT YYLR+++A + T++ Sbjct: 695 ADRGAFICQSQSLNLFVDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAAQAVQFTVEKQ 754 Query: 920 DGKLNA------------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 G+ D + CT + C C Sbjct: 755 GGQQMEPMVEKKAGEAKAAKAVDTKLDEVEFVEGAVCTMEEGCVTC 800 >gi|237798940|ref|ZP_04587401.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806193|ref|ZP_04592897.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021794|gb|EGI01851.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027306|gb|EGI07361.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] Length = 748 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 465/752 (61%), Positives = 566/752 (75%), Gaps = 22/752 (2%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 AR L++ LR E L ATHHEM LY + Y+ G+K LL+ + +FDL Sbjct: 1 ARLLMDTLRAEGLG-FLGVADSATHHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEK 59 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 L + +ERD F YLGLQ LYDRYF+H +G R E+PQ FFMRVAMGLA++E +E RA+ Sbjct: 60 LGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAI 119 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 EFYNLLSSF +M STPTLFN+GT PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGL Sbjct: 120 EFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGL 179 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 GNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+E Sbjct: 180 GNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIE 239 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF++LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ Sbjct: 240 EFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQE 299 Query: 521 AYENYERQ-ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 YE YE G++K+F+ I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVV Sbjct: 300 RYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVV 359 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 HSSNLCTEITLN++ +E AVCNLGSINL H N + D DKL T+ AVR+LDNVIDIN Sbjct: 360 HSSNLCTEITLNTNKDEIAVCNLGSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDIN 419 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +++ +AK SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SME +S++AI AS Sbjct: 420 YYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASC 479 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIG 757 +LA ERGAY +F+GSLW +G+ P+DS +L E R ++++ L W ++ RV+ G Sbjct: 480 DLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-G 538 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNSN MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD Sbjct: 539 IRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWD 598 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 MI+DLKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ Sbjct: 599 SVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYI 658 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 SGKKLD YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV + Sbjct: 659 AGASGKKLDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSA 716 Query: 938 LGIPS---------------SCTSDTECEVCQ 954 + P + +CE CQ Sbjct: 717 ITAPRPTEAAPAGPAPVPKACAIDEPDCEACQ 748 >gi|242014390|ref|XP_002427874.1| Ribonucleoside-diphosphate reductase large chain, putative [Pediculus humanus corporis] gi|212512343|gb|EEB15136.1| Ribonucleoside-diphosphate reductase large chain, putative [Pediculus humanus corporis] Length = 795 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 284/818 (34%), Positives = 443/818 (54%), Gaps = 33/818 (4%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200 K+ ++ G + ++ +++ C GL V + + +Y G++ ++L++ Sbjct: 2 NKMFVIKRGGRNEEVHFDKITSRIQKLCYGLNLDYVDPIAITVKVINGLYSGVTTAELDS 61 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 S ++ + P+YA + AR + L +E + M LY Sbjct: 62 LAAEVSASMTTQHPDYAILAARIAVSNLHKETKVSFSDV--------MTDLYNMKNSFNQ 113 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + H ++ L + YERD+ + Y G + L Y L ING +E PQ Sbjct: 114 QPTPMLSDYHYDIIIKHADELNAAIIYERDYNYNYFGFKTLERSYLLKINGKVVERPQHM 173 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379 MRVA+GL + A+E YNLLS +F ++PTLF++ TR PQLSSCFL T+ D Sbjct: 174 LMRVAVGLHGDDIS---SAIETYNLLSEKYFTHASPTLFSAATRKPQLSSCFLLTMKEDS 230 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L++ A+++K +GG+G + +R G +I GTNG S G++P L+V N+TA V+ Sbjct: 231 IDGIYETLKQCALISKSAGGIGVNIHCIRSKGTYIAGTNGISNGIVPMLRVFNNTARYVD 290 Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG KR GA YLE WH D+ EFLDL+KNTG + R D+ A WIPDLFM+RV QN Sbjct: 291 QGGNKRPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQE 350 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L P L D +G+EF Y +YE + +K+ A +LW ++ ETG Sbjct: 351 WCLMCPKTCPGLSDCWGEEFNKLYLSYEE-----KGLYVKKVKAQSLWYAIIESQVETGT 405 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FD 617 P++ +KD CN +S QQ++G + SNLCTEI SS EE AVCNL SI + ++ ++ Sbjct: 406 PYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEIAVCNLASIAVNMFVKPDKTYN 465 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 ++KL + + L+ VIDI + + +AK SN HR IG+G+ G A L+ +P+ SP Sbjct: 466 FEKLKDVTKIITKNLNKVIDITYYPVPEAKLSNLRHRPIGIGIQGLADAFILMRLPFDSP 525 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I + A+ AS ELA G Y +++GS +G+ D G+ Sbjct: 526 EAQKLNIQIFETIYYGALEASSELAAIHGPYETYEGSPASKGILQYDMWGVTP------- 578 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T+ WD LK ++K G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 579 ---TNLWDWDALKNKIKKWGIRNSLLIAPMPTASTAQILGNNESFEPYTTNIYTRRVLSG 635 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+ +L + LW++ M + + + GSI NI+ IP +LK ++ T +EI ++ Sbjct: 636 EFQVVNQHLLKDLTEIGLWNDEMKNTIIANGGSIQNIDSIPKELKALYKTVWEISQKVIL 695 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +IDQ+QSLN+++ +P+ KL ++ AW +GLKT YYLR++ A + T+ Sbjct: 696 KMAADRGAFIDQSQSLNIHIAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAAQPIQFTV 755 Query: 917 KGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 N V+ + I S + +C +C Sbjct: 756 DKTKVNNANVKEVSTEKDKFNMESISCSLQNKDDCLMC 793 >gi|311748426|ref|ZP_07722211.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus sp. PR1] gi|126576939|gb|EAZ81187.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus sp. PR1] Length = 799 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 288/822 (35%), Positives = 452/822 (54%), Gaps = 38/822 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S ++ +E C L + V + +YDG++ S+L+ Sbjct: 1 MLVIKRDGRRESVRFDKITARIENLCYELDPKFIQPIEVAKKVIDGLYDGVTTSELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 +L K P+YA + AR + L + ++ + M+ LY + Sbjct: 61 AEVCASLTVKHPDYAILAARIAISNLHKTT--------SQSFSNTMKRLYTYINPKTGGN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + Y+RDF ++Y G + L Y + ++G +E PQ M Sbjct: 113 ASLIDPEVYGVVKKNAAKLDAIIDYKRDFGYDYFGYKTLERSYLIRLDGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E AVE Y+LLS F +TPTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVAVGIH---KEDIDAAVETYHLLSEKWFTHATPTLFNAGTPKPQLSSCFLLTMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G VR G++I GTNG S G++P L+ + TA V+QG Sbjct: 230 GIYDTLKQCAKISQSAGGIGLSIHHVRAKGSYIKGTNGVSNGIVPMLRNFDMTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH DV++FLDL++N G + R D+ A WI DLFMKRV QN W+ Sbjct: 290 GGKRKGSFAIYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKRVEQNETWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D YG+EFE YE YE+ E + + A LW ++L ETG P+ Sbjct: 350 LFCPNEAPGLSDCYGEEFERLYEKYEK-----EGRARETVKAQELWFEILESQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615 + +KD N +S QQ++G + SSNLCTEI ++ +E AVCNL S+ L Sbjct: 405 MLYKDAANKKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPKFVRTGPDGKLF 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ KL + A R L+ VID+N + +++A++SN HR IGLG+ G A +L +P+ Sbjct: 465 FDHQKLYEITKVATRNLNKVIDVNYYPVDEARRSNFRHRPIGLGVQGLADAFIMLRMPFE 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + ++ E I + A+ S+ELA+ G Y +++GS +G+ D G+ + Sbjct: 525 SAEAKGLNEDIFETIYYAAVETSMELAKVEGTYETYEGSPASKGILQFDMWGVTPK---- 580 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + R W ELK++VK +G+RNS +A PTA+ + I G ++ +P N+Y + + Sbjct: 581 -----SERWNWTELKEKVKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRRTL 635 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN L+ +L + LWD+ M + L +GS+ ++ +P ++K ++ T +EI Sbjct: 636 SGEFIVVNKHLMKDLIRLGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKTVWEISQKV 695 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ A+ R +I Q+QS+N++L +P+ KL ++ AW GLKT YYLRS++A S K Sbjct: 696 IIDLAADRGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAASAIKF 755 Query: 915 TLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTE-CEVC 953 TL + K++ + ++ + S D + CE+C Sbjct: 756 TLDKSNLEPKVDKAMQEEIDAKSLKQDAISCSLDDPDGCEMC 797 >gi|327403796|ref|YP_004344634.1| ribonucleoside-diphosphate reductase subunit alpha [Fluviicola taffensis DSM 16823] gi|327319304|gb|AEA43796.1| ribonucleoside-diphosphate reductase, alpha subunit [Fluviicola taffensis DSM 16823] Length = 789 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 291/814 (35%), Positives = 438/814 (53%), Gaps = 32/814 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG + ++ + + C GL VS + V + + +YDG++ + L+ Sbjct: 1 MYVLKRDGRKEAVKFDKITARIIKMCYGLDPLVSPEAVAMKVIEGIYDGVTTTVLDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + P+YA + +R + L +E + + M+ LY + + Sbjct: 61 EVAAAKTIDHPDYALLASRIAVSNLHKETKKSFSEV--------MEDLYKYVDPKTGQRA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y+RDF ++Y G + L Y L G E PQ MR Sbjct: 113 SLIADDVYEVIQNNSELLDSSIIYDRDFRYDYFGFKTLTRSYLLRTKGEIAERPQQMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 VA+G+ + +A++ YNL+S F +TPTLFN+GT PQ+SSCFL T+ DD + G Sbjct: 173 VAVGIHKND---LPQAIKTYNLMSEGWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIEG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L+ A +++ +GG+G +R G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYETLKSCAQISQSAGGIGLAIHNIRATGSYIKGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH DV +FLDL+KNTG + R D+ A WIPDLFMKRV +N WTL Sbjct: 290 GKRKGSFAMYIEPWHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVEENGDWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E L D +G EFE Y YE E K + I A LW K+L ETG P++ Sbjct: 350 MCPHECPGLSDTFGAEFEALYTQYE-----TEGKGRKTIKAQDLWFKVLESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDK 620 +KD N +S QQ++GV+ SSNLCTEI ++ +E AVCNL S+ L + + +FD+DK Sbjct: 405 LYKDAANAKSNQQNLGVIKSSNLCTEIIEYTAPDEIAVCNLASLALPKYVTEDGKFDHDK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L A L+ +ID N + +E+A+KSN HR IGLG+ G +L P+ S EA Sbjct: 465 LFEVTYQATVNLNRIIDGNFYPVEEARKSNMRHRPIGLGVQGLADTFIMLRYPFESEEAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E E I + A++AS +LA G Y ++ GS +GVF D G+ Sbjct: 525 ALNREIFETIYYAAMTASKDLAMAEGPYETYAGSPVSKGVFQYDMWGVTP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 TSR WD LK+ V G+RNS +A PTA+ A I G ++ +P N+Y + +SG+F Sbjct: 575 TSRWEWDLLKEEVAKYGVRNSLLVAPMPTASTAQILGNNECFEPYTSNIYTRRVLSGEFI 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN L+ +L + LW + M L +GS+ NI IP +K ++ TA+EI +IE A Sbjct: 635 IVNKHLLKDLVKEGLWTKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWEISQKAIIEQA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLN++++ + KL ++ W GLKT YYLR+++AT K T+ Sbjct: 695 ADRGAYICQSQSLNIFMENANFGKLTSMHFYGWKKGLKTGMYYLRTKAATDAIKFTVDKA 754 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ I S + CE+C Sbjct: 755 VTE-EPAAISAAELEEQQAAIACSLDNPDNCEMC 787 >gi|269302770|gb|ACZ32870.1| ribonucleoside-diphosphate reductase, alpha subunit, truncated [Chlamydophila pneumoniae LPCoLN] Length = 815 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 433/815 (53%), Positives = 564/815 (69%), Gaps = 14/815 (1%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFS 205 + +DGT LE AC S+++ + N+Y G+ E ++ TA I + Sbjct: 8 VQKEDGTTYLLRKTDLEKRFSWACKRFPKTTDSQLLADMAFMNLYSGIKEEEVTTACIMA 67 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +R IE+EP+YA + A L L E L + P + ++ ++F YI G + Sbjct: 68 ARANIEREPDYAFIAAELLTSSLYEETLGCNSQDP------NLSEIHKKHFKEYILNG-E 120 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 L+ + D+DL L+ L RD F Y+G+Q LYDRYF G R+E Q F+MRV+ Sbjct: 121 EYRLNPQLKDYDLDALSEVLDLSRDQQFSYMGVQNLYDRYFNLHEGRRLETAQIFWMRVS 180 Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 MGLAL E +K A+ FYNLLS+F + +TPTLFNSG RH QLSSC+L+TV DDL I+ Sbjct: 181 MGLALNEGEQKNFWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVKDDLSHIY 240 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + +NA+L+K++GG+GNDWT VR GA I GTNGKSQGVIPF+KVANDTA+AVNQGGKR Sbjct: 241 KVISDNALLSKWAGGIGNDWTDVRATGAVIKGTNGKSQGVIPFIKVANDTAIAVNQGGKR 300 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGA+C YLE WH+D E+FL+LRKNTGD+RRRTHD+NTA+WIPDLF KR+ + WTLFSP Sbjct: 301 KGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFSP 360 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 D+V LH+ YG EFE YE YER+ + GEI++++K+ A LWRKML+ML+ETGHPWITFK Sbjct: 361 DDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITFK 420 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DP NIRS Q HVGVV SNLCTEI LN S ETAVCNLGSINL+ H N + D +KL T Sbjct: 421 DPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIRNGKLDEEKLKET 480 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I A+R+LDNVID+N + +AK++N THRA+GLG+MGFQ L+ L+I YAS EAVE +D Sbjct: 481 ISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSD 540 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA--MNRTS 742 E E I+++AI AS LA+ERG Y+S+ GS WD+G P+D+I LL E R E ++ +S Sbjct: 541 ECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSS 600 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 + W ++ ++ GMRNS MAIAPTATI+NI GV+QSI+P Y++L+VKSN+SG+FT+ Sbjct: 601 KKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIP 660 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N++L+ +LK+ LWD M+ DLKY DGS+ IERIP+ LKK+ TAFEI+P W+IE SR Sbjct: 661 NTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSR 720 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 RQKWID SLNLYL EP GKKL +Y AW GLKTTYYLRS++ATSVEKS + Sbjct: 721 RQKWIDMGVSLNLYLAEPDGKKLSNMYLMAWKKGLKTTYYLRSQAATSVEKSFIDINKRG 780 Query: 923 LNAVPVTDPNSSTH---SLGIPSSCTSDTECEVCQ 954 + + + ++ST C+ + CE CQ Sbjct: 781 IQPRWMKNKSASTSIVVERKTTPVCSMEEGCESCQ 815 >gi|163753570|ref|ZP_02160693.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia algicida OT-1] gi|161325784|gb|EDP97110.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia algicida OT-1] Length = 812 Score = 715 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 288/833 (34%), Positives = 445/833 (53%), Gaps = 47/833 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V + C GL + V V + +YDG++ S+L+ Sbjct: 1 MFVVKRDGRKEPMMFDKITSRVRKLCYGLNNLVDPVKVAMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + T+ P+YA++ AR + L + +K+ M LY R ++ Sbjct: 61 EIAATMTTTHPDYARLAARISVSNLHKNT--------KKSFSETMVDLYEYVNPRTGKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 +++ + L + + Y RDF ++Y G + L Y L +NG E PQ MR Sbjct: 113 PLLSDEVYNVIMENADRLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + A+E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + G Sbjct: 173 VSVGIHLND---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLRVYNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ +FLDL+KN G + R D+ A WIPDLFMKRV +N WTL Sbjct: 290 GKRKGSFAIYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEENGPWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E +L +++ +EFE Y YE E K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPNLFNVHSEEFEALYLKYEA-----EGKGRKTIKARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L +FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKGGEFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + L+ VID N + +++A+ SN HR IGLG+ G L +P+ S EA + Sbjct: 465 FRVTKRVTKNLNKVIDRNYYPVKEAENSNFRHRPIGLGVQGLADTFIKLRMPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+E+A+ G Y +++GS +G F + G+ E + Sbjct: 525 LNQEIFETLYFAAVTASMEMAKIEGPYQTYEGSPMSKGEFQHNLWGIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W +L+K+V G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V Sbjct: 578 GRWDWGKLRKQVAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LW E + +L +GSI +I+ IP D+K ++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVNLGLWTEDLKQELMRANGSIQHIDEIPQDIKDLYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR++SA K T+K Sbjct: 698 HRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWRSGLKTGMYYLRTKSAVDAIKFTVKKAK 757 Query: 921 G-------------------KLNAVPVTDPNSSTHSLGIPSSCT-SDTECEVC 953 K V V I + D +C +C Sbjct: 758 KSIAVPAEAAAGISVQTTGSKPAPVAVEPLTPEEMKEMIARAKDGQDDDCLMC 810 >gi|326435406|gb|EGD80976.1| Rrm1 protein [Salpingoeca sp. ATCC 50818] Length = 779 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 294/814 (36%), Positives = 434/814 (53%), Gaps = 42/814 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ V + GL + V + + +Y G++ +L+ Sbjct: 1 MYVVKRDGRKEKVLFDKITSRVSKLSYGLNTEHVDAVEITKRVISGVYTGVTTVELDQLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + K P+YA + AR + L + + L+ Sbjct: 61 AETAASFTTKHPDYAILAARIAVSNLHKMTHKQFSDV--------IDALHHYVNPETGRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + + +ERDF F + G + L Y L +NG E PQ FM Sbjct: 113 APLISKETYEQVMANKEVYNSHIIFERDFNFNFFGFKTLERSYLLKMNGKVAERPQHMFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E A+E YN +S F ++PTLFNSGT PQLSSCFL T+ DD + Sbjct: 173 RVAIGMHG---EDVDAAIETYNYMSEGFFTHASPTLFNSGTPIPQLSSCFLLTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLSVHNIRASGSYIAGTNGHSNGLVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +FL+L+KNTG + +R D+ A W+PDLFMKRV N WT Sbjct: 290 GNKRPGAFAVYLEPWHADIFDFLELKKNTGVEEQRARDLFFALWVPDLFMKRVEANEEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D YG EFE YE YE E K +K+SA LW +L ETG P+ Sbjct: 350 LMCPHECPGLSDTYGDEFERLYEKYEA-----EGKGRKKVSASKLWFAILDAQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S Q+++G +HSSNLCTEI SS +E AVCNLGSI L + FDY K Sbjct: 405 MLYKDACNKKSNQKNLGTIHSSNLCTEIIEYSSPDEVAVCNLGSIALNKFVGDKTFDYKK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ +IDIN + + +A+KSN HR IG+G+ G A L+ +P+ S EA Sbjct: 465 LHEVTKVLTRNLNKIIDINYYPVPEARKSNMRHRPIGIGVQGLADAFILMRLPFDSDEAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E+ + E I A+ AS E+A G Y +F+GS +G+ D + Sbjct: 525 EVNRKIFETIYHGALEASTEIASVEGPYETFEGSPTSEGILQFDMW----------DVKP 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W+ L++RVK G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 TDLWDWESLRERVKKDGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L + LW + + + ++GSI IE IPDD+K ++ T +E+ LI+ A Sbjct: 635 VVNKHLLKDLVEMGLWSDEVKDQIILNNGSIQKIEGIPDDIKALYKTVWELSQRTLIDMA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS N+++ +P+ KL ++ AW GLKT YYLRSR+AT+ + T+ Sbjct: 695 ADRGAFIDQSQSFNVHISDPNFGKLTSMHFYAWKRGLKTGMYYLRSRAATNAIQFTVDAK 754 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + S + EC +C Sbjct: 755 KAR-----------EAKEAAMMCSIDNRDECVMC 777 >gi|284041187|ref|YP_003391117.1| ribonucleoside-diphosphate reductase subunit alpha [Spirosoma linguale DSM 74] gi|283820480|gb|ADB42318.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirosoma linguale DSM 74] Length = 826 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 295/849 (34%), Positives = 450/849 (53%), Gaps = 65/849 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S ++ +E+ C GL V V + +YDG+ ++L+ Sbjct: 1 MFVVKRDGRRESVKFDKITARIEKLCYGLDPAYVQPVEVAVKVVSGLYDGVKTTELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ K P+YA + AR + L +E + +K +E + E Sbjct: 61 AETAASMTTKHPDYAILAARIAISNLHKETNKSFSGTIKKLYQYED--------PKTGEN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RD+ ++Y G + L Y L ++G E PQ M Sbjct: 113 ASLISKEVYDVVRQHAALLDSTIIYDRDYGYDYFGYKTLEKSYLLKLDGRIAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E + A+E YNLLS F +TPTLFN+GT PQ+SSCFL T+ DD + Sbjct: 173 RVAVGIHQ---EDIESAIETYNLLSEKWFTHATPTLFNAGTPKPQMSSCFLLTMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G VR G +I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGTYIKGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH D+ +FLDL+KN+G + R D+ A W PDLFMKRV + W+ Sbjct: 290 GGKRKGSFAIYLEPWHADIFDFLDLKKNSGKEEGRARDLFYALWTPDLFMKRVEDDDVWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D YG EFE Y YER E + R I A LW K+L ETG P+ Sbjct: 350 LFCPHECPGLADCYGDEFEELYTRYER-----EGRARRTIKAQELWFKILESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + +KD N +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + Sbjct: 405 MLYKDAANKKSNQKNLGTIKSSNLCTEIIEYTAPDEIAVCNLASIALPKFITRGTDGIMR 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ KL +TA R L+ +IDIN + +E+A++SN HR IGLG+ G A +L +P+ Sbjct: 465 FDHQKLYEVTKTATRNLNKIIDINYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPFE 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + ++ E I F A+++S+E A+E G Y ++KGS QG+F D G+ + Sbjct: 525 SEEARRLNEDIFETIYFGAMTSSMEQAKEFGPYETWKGSPISQGIFQFDMWGVKPK---- 580 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 ++R W+ L+K V G+RNS +A PTA+ + I G ++ +P N+Y + + Sbjct: 581 -----SNRWDWESLRKDVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVL 635 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN L+ +L + LW++AM ++L +GSI I IP ++K ++ T +EI Sbjct: 636 SGEFVVVNKHLLKDLVKLGLWNDAMKNNLILANGSIQAIPNIPQNIKDLYKTVWEIKQKH 695 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ A+ R +I Q+QSLN+++ + + KL ++ AW GLKT YYLR+++A K Sbjct: 696 IIDMAADRGAYICQSQSLNIHIQDSNFGKLTSMHFYAWKAGLKTGMYYLRTKAAADAVKF 755 Query: 915 TLKGVDGKLNAVPVTDPNSSTHS------------------------------LGIPSSC 944 T+ + PV + + S Sbjct: 756 TVVQPQAEPQLEPVMAEAVTVEKPLDYVQYAKEHAQNATPQPVPMVTDLEQQYAAMTCSL 815 Query: 945 TSDTECEVC 953 CE+C Sbjct: 816 DDPEGCEMC 824 >gi|325286575|ref|YP_004262365.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga lytica DSM 7489] gi|324322029|gb|ADY29494.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga lytica DSM 7489] Length = 825 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 289/807 (35%), Positives = 447/807 (55%), Gaps = 27/807 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V + C GL V V + +YDG++ S+L+ Sbjct: 1 MYVVKRDGRKELIMFDKITARVRKLCYGLNALVDPLKVAMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + T+ P+YAK+ AR + L + + + M+ LY R ++ Sbjct: 61 EIAATMTTTHPDYAKLAARISVSNLHKNTKKSFSEV--------MKDLYEYVNPRTGKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y RDF ++Y G + L Y L +NG E PQ MR Sbjct: 113 PLLSDEVFKVIQDNSEKLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + A+E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + G Sbjct: 173 VSIGIHLND---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S GV+P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGVVPMLRVYNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ EFLDL+KN G + R D+ A WIPDLFM+RV NA WTL Sbjct: 290 GKRKGSFAVYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANADWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E DL+ + KEFE AY +E E K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPDLYKKHDKEFEEAYLAFEA-----EGKGRKTIKARDLWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI ++ +E AVCNL SI L N +FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKNGEFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + R L+ VID N + + +A+ SN HR IGLG+ G A ++ +P+ S EA + Sbjct: 465 FRVTKRVTRNLNTVIDRNYYPVVEAENSNMRHRPIGLGVQGLADAFIMMRMPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + + A++AS+E+A+E G YSS++GS +G F + G+ + + Sbjct: 525 LNQEIFETLYYAAVTASMEMAKEDGPYSSYEGSPISKGDFQHNLWGIKDDEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W++L+K V G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V Sbjct: 578 GRWDWEKLRKSVLKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L Q LW+E++ +L +GSI +I+ IP+D+K+++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVQLGLWNESLKQELMRANGSIQHIDIIPEDIKELYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR+++A K T+ Sbjct: 698 HRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVDNSK 757 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSD 947 K V P + ++ Sbjct: 758 KKEKPVVEAPEPKLAAVSAAPKATATE 784 >gi|296479831|gb|DAA21946.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus] Length = 791 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 292/815 (35%), Positives = 456/815 (55%), Gaps = 32/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ L+ + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE YE+ E +V + I A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYEK-----EGRVRKVIKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W+ LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789 >gi|156408425|ref|XP_001641857.1| predicted protein [Nematostella vectensis] gi|156228997|gb|EDO49794.1| predicted protein [Nematostella vectensis] Length = 810 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 285/832 (34%), Positives = 450/832 (54%), Gaps = 41/832 (4%) Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLS 194 + L ++ +G ++ + + C GL++ V + + +Y G+ Sbjct: 3 NQDTYNDDLYVLKRNGDSERVYLDKITSRISKLCYGLKNEFVKPINITMKVISGIYQGVK 62 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 ++L+T ++ ++ K P+YA + AR + L +E +K M+ LY Sbjct: 63 TTELDTLAAETAASMTTKHPDYAILAARIEVSNLHKET--------KKVFSEVMEELYNY 114 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 + + ++ L + + Y+RD+ + Y G + L Y L ING Sbjct: 115 VNPKNNKHSPLISKETLDIIQKHADRLNSAIIYDRDYQYNYFGFKTLMRSYLLKINGKVA 174 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRV++G+ E A+E YNL+S F ++PTLFN+GT PQ+SSCFL Sbjct: 175 ERPQHMLMRVSVGIHG---EDIDAAIETYNLMSEKWFTHASPTLFNAGTNRPQMSSCFLL 231 Query: 375 TVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ DD + GI+G L+ A+++K +GG+G + +R G++I GTNG S G++P L+V + Sbjct: 232 TMSDDSIEGIYGTLRTCALISKNAGGIGVNVHCIRAAGSYIAGTNGHSNGLVPMLRVYDS 291 Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QG KR GA YLE WH D+ EFLDL+KNTG + +R D+ A WIPDLFMKR Sbjct: 292 TARYVDQGGNKRPGAFAIYLEPWHADILEFLDLKKNTGKEEQRARDLFYALWIPDLFMKR 351 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + W+L P++ L D YG++FE YE YE Q K R+I A LW +L Sbjct: 352 VEADGMWSLMCPNQCPGLQDCYGEKFEKLYEKYESQ-----GKYMRQIKAQKLWFAILES 406 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-- 610 ETG P++ +KD CN +S Q+++G + SNLCTEI S+ +E AVCNL SI L Sbjct: 407 QTETGTPYMLYKDACNSKSNQKNLGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNRFVN 466 Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + +F++ KL + + L+ +ID+N + + +A+KSN HR IG+G+ G A Sbjct: 467 VDKSPPEFNFQKLFEVTQVVTKNLNKIIDVNYYPVPEARKSNFRHRPIGIGVQGLADAFI 526 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L+ P+ S +A E+ E I + A++AS +LA G Y +++GS QG+ D + Sbjct: 527 LMRYPFESQKAQELNKLIFETIYYGAVTASCDLAATNGPYETYEGSPASQGLLQYDLWNV 586 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 ++ W+ LKK+VK G+RNS +A PTA+ A I G ++SI+P N Sbjct: 587 TP----------SNLWDWEALKKKVKEHGLRNSLLIAPMPTASTAQILGNNESIEPYTSN 636 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F +VN L+ +L + LW++ M + L ++GSI +I+ IP DLK ++ T Sbjct: 637 IYSRRVLSGEFQIVNHHLLKDLTEMGLWNDGMKNQLIANNGSIQDIKEIPADLKALYKTV 696 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI LI+ A+ R +IDQ+QS N+++ +P+ KL ++ W GLKT YYLRSR Sbjct: 697 WEIKQRVLIDMAADRGAFIDQSQSFNVFIAQPTFSKLTSMHFYGWKKGLKTGMYYLRSRP 756 Query: 908 ATSVEKSTLKGV----DGKLNAVPVTDPNSSTHSLGIPSSC--TSDTECEVC 953 A + + T+ ++ P ++ ++C + C +C Sbjct: 757 AVNAIQFTVDQTALAKKKASDSSPTSNEEKPKKDEDAAAACRRDNPDGCLMC 808 >gi|71895081|ref|NP_001026008.1| ribonucleoside-diphosphate reductase large subunit [Gallus gallus] gi|53127690|emb|CAG31174.1| hypothetical protein RCJMB04_2p9 [Gallus gallus] Length = 790 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 290/815 (35%), Positives = 456/815 (55%), Gaps = 33/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMDDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L IN E PQ M Sbjct: 113 SPMISKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + A+E YNLLS F ++PTLFN+GT P+LSSCFL + DD + Sbjct: 173 RVAVGIHKND---IDAAIETYNLLSERWFTHASPTLFNAGTNRPRLSSCFLLCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V R + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRRVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL SI L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A++SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS ELA+++G Y +++GS +G+ D + Sbjct: 525 QRLNQQIFETIYYGALEASCELAEQQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W LK+++ G+RNS ++ PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -SDLWDWKALKEKIAKYGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L +R LW+E M + + H+GSI NI IP DLK+++ T +EI +++ Sbjct: 635 QVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR++ A + + TL Sbjct: 695 AADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNK 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + + S + EC +C Sbjct: 755 EKLR-EREKASEEEKERNKAAMVCSLENRDECMMC 788 >gi|320167592|gb|EFW44491.1| ribonucleotide reductase M1 subunit [Capsaspora owczarzaki ATCC 30864] Length = 785 Score = 712 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 284/815 (34%), Positives = 438/815 (53%), Gaps = 38/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V + C GL V + + + +Y G++ +L+T Sbjct: 1 MFVKKRDGRTEKVMFDKITSRVNKLCYGLNSDYVDAVEITQKVINGVYPGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L K P+YA + AR + L +E M+ LY + + Sbjct: 61 AETAAYLTTKHPDYAILAARIAVSNLHKETKKQFSSV--------MRDLYEYQNPKTGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ++G E PQ M Sbjct: 113 APLLADDVYEIIQRNADILDSAVIYDRDFSYSYFGFKTLERSYLLKLHGKIAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E +E YNL+S F ++PTLFNSGT HPQLSSCFL T+ DD + Sbjct: 173 RVAVGIH---KENIDLVLETYNLMSEKWFTHASPTLFNSGTPHPQLSSCFLLTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N TA V+QG Sbjct: 230 GIYETLKTCAMISKTAGGIGLNVHCIRASGSYIAGTNGHSNGLVPMLRVFNTTARYVDQG 289 Query: 442 GKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+ GA YLE WH DV +FL+L+KNTG + +R D+ A WIPDLFMKRV + W+ Sbjct: 290 GNRRPGAFAMYLEPWHADVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVEADGNWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L + YG +FE Y YER E K + I A LW +L E+G P+ Sbjct: 350 LMCPHECPGLEETYGDKFEELYTRYER-----EGKARKVIKAQKLWFAILESQTESGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619 + +KD CNI+S Q+++G + SNLCTEI SS +E AVCNL S++L + +D+ Sbjct: 405 MLYKDACNIKSNQKNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLSLPMFVRSDRTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + + L+ +IDIN + + +A+KSN HR IGLG+ G A + +P+ S +A Sbjct: 465 KLHEITQVVTKNLNRIIDINYYPVPEAEKSNMRHRPIGLGVQGLADAFIQMRVPFDSEDA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ E E I A++ASVE+A++ G Y ++ GS QG+ D G+ Sbjct: 525 KKLNREIFETIYHAALTASVEMAKKSGPYETYAGSPVSQGILQHDMWGVKE--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + WD L+ ++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 TSGLWDWDALRAQIAQHGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 635 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+++L + LW++ M + + GSI IE IP ++ ++ T +E+ LI+ Sbjct: 636 QIVNQHLLHDLMELGLWNDRMKNKIISQGGSIAGIEEIPAHIRALYKTVWELSQKTLIDM 695 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QS N+++ EP+ KL ++ AW GLKT YYLR+R A + + T+ Sbjct: 696 AADRGAYIDQSQSFNVHIAEPNFGKLTSMHFYAWKRGLKTGMYYLRTRPAANAIQFTVDQ 755 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + P + S + C +C Sbjct: 756 K-------ALAAPQKVDEEAAMVCSLQNKEACLMC 783 >gi|291384376|ref|XP_002708776.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain [Oryctolagus cuniculus] Length = 792 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 289/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYSYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SNLCTE+ +S +E AVCNL S+ L + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTPEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++G +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGCPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 EKLKDKEKASKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|164519000|ref|NP_001106767.1| ribonucleoside-diphosphate reductase M1 chain [Bos taurus] gi|158455067|gb|AAI09487.2| RRM1 protein [Bos taurus] Length = 791 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 291/815 (35%), Positives = 455/815 (55%), Gaps = 32/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ L+ + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE YE+ E +V + I A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYEK-----EGRVRKVIKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W+ LK+++ G+RNS +A PTA+ I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTVQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789 >gi|31982026|ref|NP_033129.2| ribonucleoside-diphosphate reductase large subunit [Mus musculus] gi|16741219|gb|AAH16450.1| Ribonucleotide reductase M1 [Mus musculus] gi|26352964|dbj|BAC40112.1| unnamed protein product [Mus musculus] gi|74205882|dbj|BAE23230.1| unnamed protein product [Mus musculus] gi|74214440|dbj|BAE40455.1| unnamed protein product [Mus musculus] gi|148684655|gb|EDL16602.1| ribonucleotide reductase M1, isoform CRA_b [Mus musculus] Length = 792 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 293/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + +D++ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS ELA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790 >gi|73988079|ref|XP_534027.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 1 [Canis familiaris] Length = 792 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 290/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTEL------ 578 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 579 ----WDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 EKLKDKEKATKEEEEKERNTAAMVCSLENREECLMC 790 >gi|120437795|ref|YP_863481.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii KT0803] gi|117579945|emb|CAL68414.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii KT0803] Length = 819 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 293/802 (36%), Positives = 451/802 (56%), Gaps = 27/802 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V++ C GL + V V + +YD ++ S+L+ Sbjct: 1 MYVVKRDGRKEPVMFDKITARVKKLCYGLNELVDPVKVAMRVIEGLYDNVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + T+ P+YAK+ AR + L + T + M LY R E+ Sbjct: 61 EIAATMTTSHPDYAKLAARISVSNLHKNTKKTFSEV--------MTDLYEYVNPRTGEKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y RDF+++Y G + L Y L +NG E PQ MR Sbjct: 113 PLLSDEVYKVIIENKEKLDSTIIYNRDFSYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ + + A+E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + G Sbjct: 173 VSIGIHIDD---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ +FLDL+KN G + R D+ A W+PDLFMKRV QN WTL Sbjct: 290 GKRKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEQNEKWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E L D YG+EFE YE YE E K + I A LW K+ ETG P++ Sbjct: 350 MCPQECPGLFDTYGEEFEKLYEKYEA-----ENKGRKTIKARELWEKITESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N+FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEILEYTSPDEVAVCNLASIALPMFIKGNEFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + L+ VID N + +++A+ SN HR +GLG+ G L +P+ S +A + Sbjct: 465 FKITKRVTKNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADTFIKLRMPFTSDKAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+ELA+E G YS+FKGS +G F + G+ E + + Sbjct: 525 LNQEIFETLYFAAVTASMELAKEEGPYSTFKGSPISEGEFQYNLWGIKDE-------DLS 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W +L+K+V G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWDWGKLRKQVMKEGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L R+LWD+ + + + ++GS+ +I+ IPDDLK+++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVSRNLWDDEVKNAIMRNNGSVQDIDIIPDDLKELYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR++SA K TL+ Sbjct: 698 HRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLEKEK 757 Query: 921 GKLNAVPVTDPNSSTHSLGIPS 942 K V V++ + + Sbjct: 758 KKEPIVAVSEAPAKAAEKLQAA 779 >gi|268573646|ref|XP_002641800.1| C. briggsae CBR-RNR-1 protein [Caenorhabditis briggsae] gi|187031585|emb|CAP29649.1| CBR-RNR-1 protein [Caenorhabditis briggsae AF16] Length = 790 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 285/818 (34%), Positives = 448/818 (54%), Gaps = 39/818 (4%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG + + + ++ +++ GL V V + +Y G++ +L+ Sbjct: 4 HNSTYVVKRDGRMENVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELD 63 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ ++ + P YA + AR + L ++ K M+ L+ + Sbjct: 64 NLAAETAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPHT 115 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 + ++ + L + + Y+RD+++ Y G + L Y L IN +E PQ Sbjct: 116 GKHAPMISDETWEIIQKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEVVERPQQ 175 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378 MRVA+G+ K+ A+E YNL+S + ++PTLFNSGT PQ+SSCFL T+ D Sbjct: 176 MLMRVAIGIHGKDIS---AAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSED 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G + +R G+ I GTNG S G+IP L+V N+TA V Sbjct: 233 SILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYV 292 Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QG KR GA YLE WH D+ EF+ LRKNTG + R D+ A W+PDLFMKRV ++ Sbjct: 293 DQGGNKRPGAFAIYLEPWHADIFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQ 352 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P E L D +G+EFE Y YE E +V + + A LW +++ ETG Sbjct: 353 DWSLMCPCECPGLDDCWGEEFETLYAKYEA-----EGRVRKTVKARKLWEHIVSNQIETG 407 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-F 616 P+IT+KD N +S QQ++G + SNLCTEI S+ +E AVCNL SI L N++ F Sbjct: 408 LPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALNRFVTNDKKF 467 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KLA + + L+ +ID+N + IE+A+ SN HR IGLG+ G L+ P+ S Sbjct: 468 DFVKLAEVTKVITKNLNKIIDVNYYPIEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTS 527 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 P+A ++ E I + A+ AS ELA+ G YS+++GS +G D G+ Sbjct: 528 PQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTP------ 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T++ WDEL+K++ G+RNS MA PTA+ A I G ++SI+P N+Y + +S Sbjct: 582 ----TNQCNWDELRKKIAKHGVRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLS 637 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDF +VN ++ +L +R LW + M + L ++GSI NI IPDD+K+++ T +EI + Sbjct: 638 GDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPGIPDDIKELYLTVWEISQKEI 697 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 IE A+ R +IDQ+QSLN+++ +PS + ++ W GLKT YYLR++ A + + T Sbjct: 698 IEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFT 757 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + V + ++ D C +C Sbjct: 758 VDKAALQQKNVQKAESRVASPEAQ-------DEGCLMC 788 >gi|109107703|ref|XP_001113010.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 1 [Macaca mulatta] Length = 792 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 290/816 (35%), Positives = 455/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W+ LK+ + G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + ++ + S + EC +C Sbjct: 755 EKLKDKEKISKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|311263375|ref|XP_003129662.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 2 [Sus scrofa] Length = 793 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 290/815 (35%), Positives = 454/815 (55%), Gaps = 30/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ L+ + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L I+G E PQ M Sbjct: 113 SPMVARSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE YE+ + V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYEK---NRKGHVRKVVKAQQLWYAIIESQTETGTPY 406 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 407 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 466 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 467 KLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 526 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 527 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 577 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 578 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 636 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 637 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 696 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 697 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 756 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + ++ + S + EC +C Sbjct: 757 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 791 >gi|313675914|ref|YP_004053910.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga tractuosa DSM 4126] gi|312942612|gb|ADR21802.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga tractuosa DSM 4126] Length = 826 Score = 710 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 288/850 (33%), Positives = 453/850 (53%), Gaps = 67/850 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ +E+ C GL + V + +YDG++ +L+ Sbjct: 1 MLVVKRDGRRETVKFDKITARIEKLCYGLDLNYIQPIDVARKVINGIYDGVTTQELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ K P+Y+K++AR + L + K+ + M+ LY + + Sbjct: 61 AETAASMTVKHPDYSKLSARIAISNLHKTT--------SKSFSNTMKRLYTYVDAKTGQN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF +++ G + L Y + ++G +E PQ M Sbjct: 113 APLLSTETYGIIKKHAAQLDSAIIYDRDFGYDFFGFKTLERSYLMKVDGKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA+G+ E + A++ YNL+S F +TPTLFN+GT PQLSSCFL T+ D + Sbjct: 173 RVAIGIHG---EDIESAIKTYNLMSEKWFTHATPTLFNAGTPKPQLSSCFLLTIQEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G VR G++I GT G S G++P L+ + TA V+QG Sbjct: 230 GIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIKGTGGVSNGIVPMLRNFDMTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH D+ +FLDL+KN G + R D+ A W+ DLFMKRV NA WT Sbjct: 290 GGKRKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANAEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E S L + YG +FE YE YER E K + + A LW ++L ETG P+ Sbjct: 350 LFDPNEASGLDEAYGDDFEKLYEKYER-----EGKGRKTVKAQELWFEILESQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L Sbjct: 405 MLYKDAANKKSNQKNLGTIKSSNLCTEILEYTSKDEVAVCNLASIALPMFVQEDENGQKF 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+DKL TA L+ VID+N + +E+A+ SN HR IGLG+ G A LL P+ Sbjct: 465 FDHDKLYDITYTATVNLNRVIDVNYYPVEEARTSNMRHRPIGLGVQGLADAFMLLRYPFD 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E+ ++ E E I F A++AS +LA + G Y ++KGS +G+F D + R Sbjct: 525 SEESRKLNKEIFETIYFAAMTASKDLAVKEGPYETYKGSPVSKGIFQFDMWNVEPTDR-- 582 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W LK+ VK G+RNS +A PTA+ + I G ++ +P N+Y + + Sbjct: 583 --------WDWTTLKQEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTL 634 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN L+ +L +R +W++ M + L +GS+ +I IP D+K+++ T +EI Sbjct: 635 SGEFVVVNKHLMRDLIERGMWNDNMKNKLIAANGSVQDIADIPQDIKELYKTVWEISQKA 694 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ A+ R +I Q+QS+NL++ +P+ K+ ++ AW GLKT YYLRS++ATS + Sbjct: 695 IIDMAADRGAYICQSQSMNLFMQDPNFGKMTSMHFYAWKKGLKTGMYYLRSKAATSAIQF 754 Query: 915 TLKG-------------------------------VDGKLNAVPVTDPNSSTHSLGIPSS 943 T+ G+ D ++ + + S Sbjct: 755 TVDKSQLNEPQPEQKPQDITQSTDTKVNRPQNSVGTQGQGPQANAEDDLAALKAAQVACS 814 Query: 944 CTSDTECEVC 953 + +CE+C Sbjct: 815 LDNPDDCEMC 824 >gi|332211477|ref|XP_003254845.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 1 [Nomascus leucogenys] Length = 792 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 290/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI ++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|200765|gb|AAA40061.1| ribonucleotide reductase subunit M1 [Mus musculus] Length = 792 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 293/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F + PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + +D++ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS ELA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790 >gi|4506749|ref|NP_001024.1| ribonucleoside-diphosphate reductase large subunit [Homo sapiens] gi|132608|sp|P23921|RIR1_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit gi|323714413|pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp gi|323714414|pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp gi|323714415|pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp And Substrate Gdp gi|323714416|pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp And Substrate Gdp gi|323714417|pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Atp gi|323714418|pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Atp gi|323714419|pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Datp gi|323714420|pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effectors Ttp And Datp gi|36065|emb|CAA42118.1| M1 subunit of ribonucleotide reductase [Homo sapiens] gi|36153|emb|CAA42180.1| large subunit ribonucleotide reductase [Homo sapiens] gi|13676332|gb|AAH06498.1| Ribonucleotide reductase M1 [Homo sapiens] gi|119622988|gb|EAX02583.1| ribonucleotide reductase M1 polypeptide [Homo sapiens] gi|123991808|gb|ABM83954.1| ribonucleotide reductase M1 polypeptide [synthetic construct] gi|123999422|gb|ABM87271.1| ribonucleotide reductase M1 polypeptide [synthetic construct] Length = 792 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 290/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|17555242|ref|NP_499039.1| RiboNucleotide Reductase family member (rnr-1) [Caenorhabditis elegans] gi|417657|sp|Q03604|RIR1_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|3880121|emb|CAA79574.1| C. elegans protein T23G5.1, confirmed by transcript evidence [Caenorhabditis elegans] Length = 788 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 282/814 (34%), Positives = 442/814 (54%), Gaps = 41/814 (5%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG + ++ +++ GL V V + +Y G++ +L+ Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ ++ + P YA + AR + L ++ K M+ L+ + + Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPHTGKHA 119 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++++ + L + + Y+RD+++ Y G + L Y L IN +E PQ MR Sbjct: 120 PMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMR 179 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382 V++G+ + A+E YNL+S + ++PTLFNSGT PQ+SSCFL T+ D + G Sbjct: 180 VSIGIHGDD---ITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILG 236 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L++ A+++K +GG+G + +R G+ I GTNG S G+IP L+V N+TA V+QG Sbjct: 237 IYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGG 296 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH D+ EF+ LRKNTG + R D+ A WIPDLFMKRV ++ W+L Sbjct: 297 NKRPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSL 356 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E L D +G+EFE Y YE E +V + + A LW +++ ETG P+I Sbjct: 357 MCPCECPGLDDCWGEEFEALYAKYEA-----EGRVRKTVKARKLWEHIVSNQIETGLPYI 411 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDK 620 T+KD N +S QQ++G + SNLCTEI S+ +E AVCNL SI L + +FD+ K Sbjct: 412 TYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTPEKKFDFVK 471 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 LA + R L+ +ID+N + +E+A+ SN HR IGLG+ G L+ P+ S EA Sbjct: 472 LAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEAR 531 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ E I + A+ AS ELA+ G YS+++GS +G D G+ Sbjct: 532 DLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTP---------- 581 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T + W L+K++ G+RNS MA PTA+ A I G ++SI+P N+Y + +SGDF Sbjct: 582 TDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQ 641 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN ++ +L +R LW + M + L ++GSI NI+ IP D+K+++ T +EI +IE A Sbjct: 642 IVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMA 701 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QSLN+++ +PS + ++ W GLKT YYLR++ A + + T+ Sbjct: 702 ADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKN 761 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K N T + + D C +C Sbjct: 762 ALKTNQQAETPATVAE---------SQDEGCLMC 786 >gi|114635715|ref|XP_001160029.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 4 [Pan troglodytes] Length = 792 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 290/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|311263373|ref|XP_003129661.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 1 [Sus scrofa] Length = 791 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 292/815 (35%), Positives = 455/815 (55%), Gaps = 32/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ L+ + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLFNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L I+G E PQ M Sbjct: 113 SPMVARSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKISGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YERQ V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYERQGH-----VRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFT 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEKERNTAAMVCSLENRDECLMC 789 >gi|46446982|ref|YP_008347.1| ribonucleoside-diphosphate reductase large chain [Candidatus Protochlamydia amoebophila UWE25] gi|46400623|emb|CAF24072.1| probable ribonucleoside-diphosphate reductase large chain [Candidatus Protochlamydia amoebophila UWE25] Length = 773 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 288/814 (35%), Positives = 438/814 (53%), Gaps = 48/814 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + + C GL + ++ + + ++DG++ S+L+ Sbjct: 1 MFVTKRDGRKQEVKFDKITARILKLCYGLDSVHIDPVLIAMKVIEGLFDGVTTSELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + +L K P+YA + +R + L++ K+ + LY + ++ Sbjct: 61 AEVAASLTVKHPDYALLASRIAISNLQKNT--------NKSFARTIGELYHYIDPKTGKK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + Y+RDF ++Y G + L Y L ING IE PQ M Sbjct: 113 ASLIAEDVYKIVQNHAEILDATMIYDRDFGYDYFGFKTLERSYLLKINGKVIERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ + A+E Y+ +S F +TPTLFN+GT +PQ+SSCFL V D + Sbjct: 173 RVSIGIHKNDIS---AAIETYHWMSERWFTHATPTLFNAGTPYPQMSSCFLMQVKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L+ A +++ +GG+G +R G++I GT G S G+IP L+V NDTA ++QG Sbjct: 230 GIFDTLKACAKISQAAGGIGLSIHNIRATGSYIRGTGGISNGIIPMLRVYNDTARYIDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH D+ FLDLRKN G + R D+ TA WIPDLFMKRV ++ W+ Sbjct: 290 GGKRKGSFAIYLEPWHADIYAFLDLRKNHGKEELRARDLFTALWIPDLFMKRVEEDGVWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E +LH+ +G+EFE Y YE+ E K I A LW K+L ETG+P+ Sbjct: 350 LFCPNEAPNLHECWGEEFEHLYCLYEQ-----EGKAREVIKAQDLWFKILESQIETGNPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + FKD CN +S Q+H+G + SNLCTEI +S E AVCNL SI L N FD+ K Sbjct: 405 MLFKDACNYKSNQKHLGTIKLSNLCTEIIEYTSPHEAAVCNLASIALPRFIINGHFDHQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R LD +ID N + I +A+ SN HR IG+G+ G A LL +P+ S EA Sbjct: 465 LFEVTQVITRNLDKIIDENSYPIVEAQTSNLLHRPIGIGVQGLADAFILLRMPFDSKEAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E I F A++AS +LA+++G Y S++GS +G+ + + Sbjct: 525 ALNQAIFETIYFGALTASKDLAKKKGRYPSYEGSPISKGILQYEMWN----------VKP 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 +S W+ LK + G+RNS +A+ PTA+ + I G ++ +P NLY + +SG+F Sbjct: 575 SSNWDWEALKTEIAVHGIRNSLLVALMPTASTSQILGNNECFEPYTSNLYTRRVLSGEFI 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L +R+LW+E M + +GSI IE IP ++K+++ T +EI LI+ A Sbjct: 635 VVNKHLMRDLVKRELWNEEMKQRILAANGSIQGIEEIPSEIKELYKTVWEIKQKALIDMA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLNL+++ P+ KL ++ AW GLKT YYLR ++A K T+ Sbjct: 695 ADRGPFICQSQSLNLFVESPTFAKLSSMHFYAWKKGLKTGMYYLRIKAAAEAIKFTVNQN 754 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + +C+ D C C Sbjct: 755 YEQPQQE---------------IACSLD--CLSC 771 >gi|61557388|ref|NP_001013254.1| ribonucleotide reductase M1 [Rattus norvegicus] gi|55250768|gb|AAH85906.1| Ribonucleotide reductase M1 [Rattus norvegicus] gi|149068638|gb|EDM18190.1| ribonucleotide reductase M1 (mapped), isoform CRA_b [Rattus norvegicus] Length = 792 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 291/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVASSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + +D++ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IP+DLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790 >gi|197100140|ref|NP_001126012.1| ribonucleoside-diphosphate reductase large subunit [Pongo abelii] gi|75041664|sp|Q5R919|RIR1_PONAB RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit gi|55730032|emb|CAH91741.1| hypothetical protein [Pongo abelii] Length = 792 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 289/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKEA--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + S+LCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|132609|sp|P07742|RIR1_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit Length = 792 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 292/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F + PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHAPPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + +D++ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS ELA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW++ M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNKEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 EKLKDKEKALKEEEEKERNTAAMVCSLENREECLMC 790 >gi|62897131|dbj|BAD96506.1| ribonucleoside-diphosphate reductase M1 chain variant [Homo sapiens] Length = 792 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 288/816 (35%), Positives = 452/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L NG E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKTNGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFGTIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|71020483|ref|XP_760472.1| hypothetical protein UM04325.1 [Ustilago maydis 521] gi|46100377|gb|EAK85610.1| hypothetical protein UM04325.1 [Ustilago maydis 521] Length = 1117 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 280/800 (35%), Positives = 428/800 (53%), Gaps = 33/800 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 + + DG ++ + + C GL V + + + +Y+G++ +L+ Sbjct: 232 MIYVYKRDGRKEVVKFDKVTARISKLCYGLDQNYVDPIEITRKVIEGIYEGVTTVELDNL 291 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ P+YA + AR + L +E + Q LY + Sbjct: 292 AAETAAYKTTTHPDYAVLAARIAISNLHKETSKNFSQVV--------QALYEYVNPKNGR 343 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ L + + YERDF + + G + L Y L ING E PQ Sbjct: 344 HSPMISDATYKVVMEHKDQLDSAIIYERDFHYNFFGFKTLERSYLLRINGKVAERPQHML 403 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ ++ E A+E YNL+S +F ++PTLFN+GT HPQLSSCFL T+ DD + Sbjct: 404 MRVAVGIHGQDIE---SAIETYNLMSQKYFTHASPTLFNAGTPHPQLSSCFLVTMKDDSI 460 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ AM++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+Q Sbjct: 461 DGIYDTLKTCAMISKTAGGIGLNIHCIRGTGSYIAGTNGVSNGIVPMLRVFNNTARYVDQ 520 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA Y+E WH DV EFLDLRKN G + R ++ A W+PDLFMKRV QN W Sbjct: 521 GGNKRPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDW 580 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P+E L D YG EFE YE YE E + R + A LW +L ETG+P Sbjct: 581 SLMCPNECPGLADCYGDEFERLYERYEA-----EGRSKRTVKAQKLWYAILESQTETGNP 635 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--NQFD 617 +I +KD N +S Q+++G + SNLCTEI S+ +E AVCNL SI L +D Sbjct: 636 FILYKDAANRKSNQKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKTYD 695 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + +L S + + L+ +IDIN + +E+A+KSN HR IG+G+ G A ++ + S Sbjct: 696 FKRLHSVAKAICKNLNKIIDINYYPVEEARKSNMRHRPIGIGVQGLADAFMIMGYAFESA 755 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA + + E I A+ S ELA++ G+Y ++ GS QG D G+ Sbjct: 756 EARRLNVQIFETIYHAALERSCELAEQHGSYETYAGSPASQGELQYDMWGVTP------- 808 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W ELK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G Sbjct: 809 ---SDLWDWAELKAKIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAG 865 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN +L+ EL ++ LW++ M + + H GSI N+ IPD +KK++ T +EI +I Sbjct: 866 EFQVVNPWLLRELVEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKAII 925 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +I Q+QSLN++L P+ +L ++ W GLKT TYYLR++ A++ + TL Sbjct: 926 DMAADRGAFICQSQSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAIQFTL 985 Query: 917 KGVDGKLNAVPVTDPNSSTH 936 + + Sbjct: 986 SVAEVNEAKAAGKRNGGAVE 1005 >gi|167524415|ref|XP_001746543.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774813|gb|EDQ88439.1| predicted protein [Monosiga brevicollis MX1] Length = 784 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 289/816 (35%), Positives = 432/816 (52%), Gaps = 41/816 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ VE+ GL V + + +Y G+ + L+ Sbjct: 1 MYVVKRDGRHEPVLFDKITNRVEKLSFGLNRDYVEPVEITKKVMAGVYSGVHTTQLDQLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + + P+YA + AR + L ++ K+ M+ L+ + + Sbjct: 61 AETAASFTTRHPDYAILAARISVSNLHKQT--------NKSFSQTMKALHEYVNPKTGKL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++++ + L + + Y+RDF F + G + L Y L ING +E PQ FM Sbjct: 113 APLVSDETWAVIEKNKELLDSHVIYDRDFNFNFFGFKTLERSYLLKINGQVVERPQHMFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ +E YN +S F ++PTLFNSGT QLSSCFL ++ DD + Sbjct: 173 RVSVGIHGD---NLDAVLETYNHMSQGLFTHASPTLFNSGTPLAQLSSCFLVSMKDDSIK 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L AM++K +GG+G VR G++I GTNG+S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLTTCAMISKTAGGVGLSIHNVRASGSYIAGTNGESNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDL+KN G D R D+ A W+PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAVYLEPWHADVFEFLDLKKNHGSDELRARDLFYALWVPDLFMKRVERNEQWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D YG EFE YE YER E + + I A LW +L ETG P+ Sbjct: 350 LMCPHECPGLADCYGAEFEALYERYER-----EGRGRKTIDAQKLWFAILESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618 + +KD CN +S Q+++G + SNLCTEI S+ +E AVCNL S+ L +D+ Sbjct: 405 MLYKDACNEKSNQKNLGTIRCSNLCTEIVEYSAPDEVAVCNLASLALPKFVNEDTRTYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L ++ R L+ +IDIN + + +AK SN HR IG+G+ G A L+ +P+ SPE Sbjct: 465 ERLHDVVKIVTRNLNRIIDINYYPVPEAKNSNMRHRPIGIGVQGLADAFILMRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ E I A+ AS E+AQ G Y +++GS QG D G+ Sbjct: 525 ARDLNKRIFETIYHAALEASCEIAQRDGPYKTYEGSPVSQGTLQYDMWGITP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T + W LK ++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SGD Sbjct: 577 --TDQWDWAALKAKIAEHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGD 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN L+ +L + +W + + ++GSI I IPDD+K ++ T +E+ LI+ Sbjct: 635 FQVVNKHLLKDLVELGIWSNDIKQQIILNNGSIQAIAGIPDDIKALYKTVWELSQRTLID 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+++ EP+ KL ++ AW GLKT YYLR+R+A S K T+ Sbjct: 695 LAADRGAFIDQSQSFNVHMGEPNFGKLTSMHFYAWKQGLKTGMYYLRTRAAASAIKFTID 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + S T+ C +C Sbjct: 755 ATKAK--------EQQEKEEAAMVCSLTNPEGCLMC 782 >gi|83769274|dbj|BAE59411.1| unnamed protein product [Aspergillus oryzae] Length = 794 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 282/819 (34%), Positives = 437/819 (53%), Gaps = 35/819 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYINPKNKKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L I+G E PQ M Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ + EK A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVSVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYERYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L ++D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +IDIN + + +AK SN HR I LG+ G A L +P+ SPE Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS +LA++ G Y S++GS QG+ D Sbjct: 525 AKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD--TECEVCQ 954 K+ V N+S C+ + C +CQ Sbjct: 755 QEALKVADTNVARANASFRKRAKVLQCSIENKEACLMCQ 793 >gi|302689939|ref|XP_003034649.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8] gi|300108344|gb|EFI99746.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8] Length = 892 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 279/801 (34%), Positives = 433/801 (54%), Gaps = 31/801 (3%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203 + +++ +++ C GL V + + + +Y G++ +L+ Sbjct: 5 YVFKRGTRKEQIQLGKIQSRIKKLCYGLDMRHVDPLAITIKVVQGVYHGVTTVELDNLAA 64 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ L + P+YA + AR + L +E + + +K LY + + Sbjct: 65 ETAAYLTTQHPDYAVLAARIAISNLHKETTKSFSQVVEK--------LYNYVNPKNGKRA 116 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y+RDFA+ Y G + L Y L ING E PQ MR Sbjct: 117 SMISDATYKVVMDNAETLDSAIIYDRDFAYNYFGFKTLERSYLLRINGRVAERPQHMIMR 176 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 VA+G+ E+ +E YNL+S +F ++PTLFN+GT HPQ+SSCFL ++ DD + G Sbjct: 177 VAVGIHGDNIERV---LETYNLMSDRYFTHASPTLFNAGTPHPQMSSCFLVSMKDDSIEG 233 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L++ AM++K +GG+G + +R G++I GTNG S G++P L+ + TA V+QG Sbjct: 234 IYDTLKQCAMISKTAGGIGLNIHNIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGG 293 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH DV EFLDLRKN G + +R D+ A WIPDLFMKRV W+L Sbjct: 294 NKRPGAFAIYLEPWHPDVFEFLDLRKNHGKEEQRARDLFYALWIPDLFMKRVESGGDWSL 353 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P+E L D +G EFE Y YE E + +KI A LW +L ETG+P++ Sbjct: 354 FCPNEAPGLADCWGDEFEALYAKYEA-----EGRERKKIPAQKLWYAILEAQIETGNPFM 408 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S QQ++G + SSNLCTEI S+ +ETAVCNL S+ L + +D+ KL Sbjct: 409 LYKDSANRKSNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASLALPTFIRDGVYDFQKL 468 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + R L+ +ID+N + + +A++SN HR IGLG+ G A L +P+ SPEA E Sbjct: 469 HDVTKVVTRNLNKIIDVNYYPVPEARRSNMRHRPIGLGVQGLADAFMALRMPFDSPEARE 528 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E I A AS +LA+E G Y +++GS QG D G+ + Sbjct: 529 LNKQIFETIYHAACEASSDLAEEEGPYETWEGSPASQGQLQFDLWGVTP----------S 578 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W LK ++ GMRN+ +A PTA+ + I G ++ +P N+Y + ++G+F V Sbjct: 579 DLWDWASLKAKIARTGMRNALLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQV 638 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 V +L+ EL + LWD+ M + + ++GSI +I RIPDD+K I+ T +EI +++ A+ Sbjct: 639 VCPWLLRELVDKGLWDDKMKNQIIANNGSIQSIARIPDDIKAIYKTVWEISQKKVLDLAA 698 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +I Q+QSLN++L P+ +L ++ W GLKT YYLR+R A+ + T+ Sbjct: 699 DRGPFICQSQSLNVHLAAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPASQAIQFTVDQAM 758 Query: 921 GKLNAVPVTDPNSSTHSLGIP 941 K + + + + Sbjct: 759 LKESNKAEGEVAGAPARPVVA 779 >gi|91215506|ref|ZP_01252477.1| probable ribonucleoside-diphosphate reductase large chain [Psychroflexus torquis ATCC 700755] gi|91186458|gb|EAS72830.1| probable ribonucleoside-diphosphate reductase large chain [Psychroflexus torquis ATCC 700755] Length = 815 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 287/836 (34%), Positives = 453/836 (54%), Gaps = 50/836 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G ++ + + C GL V V + +YDG++ S+L+ Sbjct: 1 MHVIKRNGQKEPVMFDKITARIRKLCYGLNPLVEPAKVAMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S T+ P+YA++ AR + L + + + M LY R ++ Sbjct: 61 EISATMTVSHPDYAQLAARISVSNLHKNTKKSFSEV--------MADLYEYVNPRNNKKS 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 +++ L + + Y RDF ++Y G + L Y L +NG E PQ MR Sbjct: 113 PLIADDVYKVIEEHKDELDSRIIYSRDFNYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ E + +E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + G Sbjct: 173 VSLGIHG---EDLESVLETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G +R G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTARISQSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ FLDL+KN G + R D+ A WIPDLFMKRV +N+ WTL Sbjct: 290 GKRKGSFAMYVEPWHADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENSTWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E +L++++ +EF+ Y YE+ E K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPNLYNVHSEEFDELYLKYEQ-----ENKGRKTIKARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N +F + +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGEFQHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + ++ L+ VID N + +++A+ SN HR +GLG+ G A +L +P+ S EA + Sbjct: 465 YKITKQIIKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A+ +S+ELA+ G YSSF+GS +G F + GL + + Sbjct: 525 LNQEIFETLYFAAVESSMELAKIEGPYSSFEGSPISKGEFQFNLWGLTDN-------DTS 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W +L+++V G+RNS MA PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWNWSKLREKVMKHGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LWD+ + + +GS+ I+ IPDD+K+++ T +E+ +I+ + Sbjct: 638 VNKHLLKDLVSLGLWDDDLKDAIMRANGSVQGIDIIPDDIKELYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR++SA K TLK Sbjct: 698 QRGYFIDQSQSLNLFMEGATFAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLKSEK 757 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSC-----------------------TSDTECEVC 953 + A N++ S + D +CE+C Sbjct: 758 KEKEAPSQVVQNAAKTYEEAQSQSIKVSDDSSLSPEELKALIKQSKESEDDDCEMC 813 >gi|149634836|ref|XP_001505371.1| PREDICTED: similar to M1 subunit of ribonucleotide reductase [Ornithorhynchus anatinus] Length = 792 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 292/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKYPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYVNPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKTTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVAVGIH---EEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNRDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + +D+ Sbjct: 405 MLYKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSRDEVAVCNLASLALNMFVTLEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEASTSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA++ G Y +++GS +G+ D + Sbjct: 525 QLLNQQIFETIYYGALDASCDLAKDHGPYETYQGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IP+DLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VDGKLNAVPVTDPNSST-HSLGIPSSCTSDTECEVC 953 K + ++ + S + EC +C Sbjct: 755 EKLKEKEKATKEEEEKERNTAAMVCSLENREECLMC 790 >gi|5006420|gb|AAD37491.1| ribonucleotide reductase M1 subunit [Homo sapiens] Length = 792 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 290/816 (35%), Positives = 454/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKQDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|225683656|gb|EEH21940.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb03] Length = 797 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 282/821 (34%), Positives = 436/821 (53%), Gaps = 38/821 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNGRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAIGIHGDDVERV---IETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I ++AS ELA+ G YSS++GS QG+ D G+ Sbjct: 525 AKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSC-----TSDTECEVC 953 K+ V N + S+ + C +C Sbjct: 755 QEQLKVADTNVARVNGAMKKRAAVSASYTSSIENPESCLMC 795 >gi|146298284|ref|YP_001192875.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium johnsoniae UW101] gi|146152702|gb|ABQ03556.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium johnsoniae UW101] Length = 797 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 289/818 (35%), Positives = 458/818 (55%), Gaps = 32/818 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ +++ C GL + V V + +YDG+S S+L+ Sbjct: 1 MYVVKRDGHREPVMFDKITERIKKLCYGLNELVDPVKVAMRVIEGLYDGVSTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ ++ P+YA++ AR + L +K+ M+ +Y R ++ Sbjct: 61 ETAASMTIAHPDYAQLAARVAISNLHSNT--------KKSFSETMKDMYNYVNPRNGQDA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + +L + + Y RDF ++Y G + L Y L ING +E PQ MR Sbjct: 113 PLIADDVYKVIQENAAFLDSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + K +E Y+L+S F +TPTLFN+GT PQ+SSCFL + DD + G Sbjct: 173 VSVGIHLDD---LKSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+ETWH D+ +FLDL+KNTG + R D+ A W DLFMKRV +++ WTL Sbjct: 290 GKRKGSFAIYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDSTWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L+D+YG EFE Y +YE K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPGLYDVYGDEFEALYTDYE-----FRGKGRKTIRARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S +++G + SSNLCTEI +S +E AVCNL SI+L N +FD+ L Sbjct: 405 LYKDAANRKSNHKNLGTIRSSNLCTEIMEFTSKDEIAVCNLASISLPMFIDNGEFDHQAL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + R L+ VID N + +++A+ SN HR +GLG+ G A +L +P+ S EA + Sbjct: 465 YNVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+E+A+E G YS+F+GS QG F + G+ E + Sbjct: 525 LNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPMSQGEFQYNMWGMKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W L+K V G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWDWASLRKEVVEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L + LW+E + ++ H+GS+ NI++IP DLK ++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVKLGLWNEDLKQEIMRHNGSVQNIDKIPQDLKDLYKTVWEMSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL++ + + KL ++ AW GLKT YYLR+++A K TL Sbjct: 698 QRGYFIDQSQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLNNDK 757 Query: 921 GKLNAVPVTDPNSSTHSLG-----IPSSCTSDTECEVC 953 + A + + + + +CE+C Sbjct: 758 KEETAPSLVQETEAISVEDYKAMLLKAQAADPEDCEMC 795 >gi|149719333|ref|XP_001499936.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase subunit M1) (Ribonucleotide reductase large subunit) [Equus caballus] Length = 792 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 291/816 (35%), Positives = 455/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKPTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIHS---EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTSEHTYDFQ 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +L++E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLSREDGPYETYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I+ IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWEISQKTILKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 EKLKDKEKASKEEEEKERNTAAMVCSLENRDECLMC 790 >gi|159899094|ref|YP_001545341.1| ribonucleoside-diphosphate reductase subunit alpha [Herpetosiphon aurantiacus ATCC 23779] gi|159892133|gb|ABX05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 806 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 441/795 (55%), Positives = 558/795 (70%), Gaps = 8/795 (1%) Query: 162 LEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220 L ++ EAC+ + + Y ++ ++ A ++R+ IE+EP+Y+ V Sbjct: 18 LYQLIVEACAAYPQTTDANTLWQAASLGFYPNMAVAEQLQACCLTARSWIEQEPDYSFVA 77 Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 A L +L EVL P Y F YI+ G+ LL + FDL Sbjct: 78 AALLASQLHFEVLGEYLATPAVV------PRYASAFVDYIQAGIAQGLLDPKLASFDLAR 131 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 LA + ERD Y GLQ LYDRYF+ G R E+PQ F+MRVAMGLAL E ++E + + Sbjct: 132 LAAAIVPERDALLAYPGLQTLYDRYFIQWQGLRRELPQIFWMRVAMGLALNEADREAQTL 191 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 FY +LS FHF +TPTLFN+ T HPQLSSC+L+TV DDL IFGA+ +NAML+K++GGL Sbjct: 192 RFYEVLSQFHFTSATPTLFNAATTHPQLSSCYLSTVGDDLEAIFGAISDNAMLSKWAGGL 251 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 GNDWTPVR LGA IHGTNG SQGVIPFLK+ NDTA+AVNQGGKRKGAVCAYLE WH D+E Sbjct: 252 GNDWTPVRALGAPIHGTNGVSQGVIPFLKIVNDTAIAVNQGGKRKGAVCAYLEAWHADLE 311 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 +FLDLRK TGD+RRRTHDM+TA W+PDL M+RV N W+LFSPDEV DLHDLYG++F + Sbjct: 312 DFLDLRKPTGDERRRTHDMHTALWVPDLLMERVLSNGSWSLFSPDEVPDLHDLYGQDFAV 371 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 Y YE A +G ++ R++ AVALWRK+LT LFETGHPWIT+KD N+RSPQ HVGV+H Sbjct: 372 RYAEYEALAAQGLMRSARQVEAVALWRKVLTRLFETGHPWITWKDAANVRSPQDHVGVIH 431 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SSNLCTEI LN+S++E AVCNLGSINL AH + D +KL +T+ TAVR+LDNVIDIN Sbjct: 432 SSNLCTEILLNTSADEIAVCNLGSINLAAHIRDGSLDLEKLRTTVTTAVRMLDNVIDINF 491 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + +A ++N HR IGLGLMGFQ AL+ L I YAS AVE +D SME I++ A++AS+E Sbjct: 492 YPRPQAAQANARHRPIGLGLMGFQDALYALKIGYASQAAVEFSDRSMEAIAYFAVAASIE 551 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMR 759 LA+ERGAY SF+GS WD+G+ PIDS+ +LAE RD + ++ +S W L++ + G+R Sbjct: 552 LARERGAYPSFRGSKWDRGMLPIDSLAILAEQRDSKPELDHSSHYDWQPLREALAQYGIR 611 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NSN +AIAPTATIANI G SQSI+P+Y++LYVKSN+SGDFT VN LV+ LK R LWD Sbjct: 612 NSNLLAIAPTATIANIVGTSQSIEPTYRHLYVKSNLSGDFTTVNRALVDALKARGLWDVD 671 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 ++++LKY+DG+I IERIP +LK TAFEI P WLI A+RRQKWID QSLNLY+ E Sbjct: 672 LLAELKYYDGAISQIERIPAELKTQFLTAFEIAPEWLIACAARRQKWIDMGQSLNLYVAE 731 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 SGK+L+ IY AW MGLKTTYYLR+ +AT +EKSTL + + + + S L Sbjct: 732 TSGKRLNEIYLTAWRMGLKTTYYLRTLAATQIEKSTLDINRFGVQPRWMRNRSESASVLS 791 Query: 940 IPSSCTSDTECEVCQ 954 D CE C+ Sbjct: 792 DNVCPIDDPSCEACE 806 >gi|42490975|gb|AAH66217.1| Ribonucleotide reductase M1 [Mus musculus] Length = 792 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 293/816 (35%), Positives = 452/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + +D++ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS ELA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + + S + EC +C Sbjct: 755 EKLKDKEKALKEEEEKERDTAAMVCSLENREECLMC 790 >gi|302307390|ref|NP_984039.2| ADL057Wp [Ashbya gossypii ATCC 10895] gi|299788978|gb|AAS51863.2| ADL057Wp [Ashbya gossypii ATCC 10895] Length = 890 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 287/810 (35%), Positives = 433/810 (53%), Gaps = 37/810 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + C GL V + + +Y+G++ +L+ Sbjct: 1 MYVYKRDGRKEPVKFDKITARISRLCYGLDPKHVDAVKITQRIISGVYEGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ + LY + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSQVVS--------DLYHYTNPKNGLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L I+G E PQ M Sbjct: 113 SPMISDEVYEIVMAHKDELNSAIVYDRDFQYNYFGFKTLERSYLLRIDGKVAERPQHMVM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ K+ +K A+E YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 173 RVAVGIHGKDIKK---AIETYNLMSMRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +F+D+RKN G + R D+ A W+PDLFM+RV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHSDVFDFIDIRKNHGKEEIRARDLFPALWVPDLFMRRVQENGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L D++G+EFE YE Y R E + + I A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLSDVWGEEFEELYERYVR-----EGRGRKTIKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL------LAHFANN 614 I +KD CN +S Q+++G + SSNLC EI SS EETAVCNL SI L A Sbjct: 405 ILYKDACNRKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLASIALPAFIAEAADGKTQ 464 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +D+DKL + R L+ VID N + +E AK+SN HR I LG+ G A +L IP+ Sbjct: 465 WYDFDKLHEIAKVVTRNLNRVIDRNYYPVETAKRSNMRHRPIALGVQGLADAFMILRIPF 524 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SP+A E+ + E + A AS+ELA E G Y SFKGS QG+ D Sbjct: 525 DSPQAKELNSQIFETLYHAACEASMELAIEEGPYESFKGSPASQGILQFDMWN------- 577 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + WD LK ++ GMRNS +A PTA+ + I G ++ +P N+Y + Sbjct: 578 ---HKPSGMWDWDALKAKIIEHGMRNSLLLAPMPTASTSQILGYNECFEPYTSNMYSRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F +VN +L+ +L +WD++M S + +GSI + IP +LK ++ T +E+ Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWDDSMKSHIISDNGSIQGLPNIPQELKDLYKTVWELSQK 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I+ A+ R ++DQ+QSLN+++ P+ +L ++ W GLKT YYLR+++A++ + Sbjct: 695 TIIDMAADRGAFVDQSQSLNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 T+ + A V D + +P + Sbjct: 755 FTVDKAVAEQAANNVADLSRLHRPRYVPHA 784 >gi|73988085|ref|XP_862223.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 5 [Canis familiaris] Length = 793 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 290/817 (35%), Positives = 453/817 (55%), Gaps = 34/817 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTEL------ 578 Query: 740 RTSRLPWDELKKRVK-TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+ Sbjct: 579 ----WDWKLLKEKIANKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 FQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLK 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 MAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 754 Query: 918 GVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 755 KEKLKDKEKATKEEEEKERNTAAMVCSLENREECLMC 791 >gi|322704073|gb|EFY95672.1| ribonucleoside-diphosphate reductase large chain [Metarhizium anisopliae ARSEF 23] Length = 905 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 289/809 (35%), Positives = 438/809 (54%), Gaps = 33/809 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNERA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 113 SPMISKDTYECVMRHKDELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E+ +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + Sbjct: 173 RVAVGIWGDNIERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D YG+EFE YE YER E K R I A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYER-----EGKGRRTIRAQKLWYSILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L A + ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYDEGRYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID+N + +++A+ SN HR IG+G+ G A L +P+ SPE Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A E+ + E I A++AS+ELA+E+G YS+FKGS +G+ D + Sbjct: 525 ARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + WD LK+++K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --SDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW +AM + + +GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ +PS K+ ++ W +GLKT YYLR+++A + + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 K+ V + Sbjct: 755 QEALKVADANVGKDRLPKKRTAPAGTSYM 783 >gi|305665629|ref|YP_003861916.1| putative ribonucleoside-diphosphate reductase large chain [Maribacter sp. HTCC2170] gi|88710385|gb|EAR02617.1| probable ribonucleoside-diphosphate reductase large chain [Maribacter sp. HTCC2170] Length = 825 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 292/809 (36%), Positives = 442/809 (54%), Gaps = 27/809 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V + C GL V V + +YDG++ S+L+ Sbjct: 1 MYVVKRDGRKELIMFDKITARVRKLCYGLNGLVDPLKVAMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + T+ P+YAK+ AR + L + +K+ M+ LY R ++ Sbjct: 61 EIAATMTTTHPDYAKLAARISVSNLHKNT--------KKSFSETMEDLYTYVNPRTGKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + V L + + Y RDF ++Y G + L Y L +NG E PQ MR Sbjct: 113 PLLSDEVYKVIAENSVALDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + G Sbjct: 173 VSIGIHLDD---LDAVKETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ EFL+L+KN G + R D+ A WI DLFMKRV N WTL Sbjct: 290 GKRKGSFAIYMEPWHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEEWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L + +EFE Y YE E K + + A LW K+L ETG P++ Sbjct: 350 MCPNECPGLFTNHSEEFEKLYLKYE-----SENKGRKTVRARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N +FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + L+ VID N + +++A+ SN HR IGLG+ G A LL +P+ S EA + Sbjct: 465 FRVTKRVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFILLRLPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+E A+E G YSS+ GS QG F + G+ E + Sbjct: 525 LNQEIFETLYFAAVTASMEAAKEEGKYSSYDGSPISQGEFQHNLWGIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W +L+K VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V Sbjct: 578 GRWDWTKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L +W+E M +L +GSI +IE IP D++ ++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVNLGMWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR+++A K TL Sbjct: 698 HRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNSK 757 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 K V P ++T + G+ ++ Sbjct: 758 KKEEPVEAEVPLAATPAPGVANAIEVKPT 786 >gi|296217186|ref|XP_002754895.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 1 [Callithrix jacchus] Length = 792 Score = 705 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 291/816 (35%), Positives = 453/816 (55%), Gaps = 33/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQR-----RVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFQ 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI ++ Sbjct: 635 QIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V + ++ + S + EC +C Sbjct: 755 EKLKDKEKVSKEEEEKERNTAAMMCSLENRDECLMC 790 >gi|219110871|ref|XP_002177187.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411722|gb|EEC51650.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 814 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 287/837 (34%), Positives = 437/837 (52%), Gaps = 53/837 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA 201 + ++ +G S + ++ V + C GL V I+ + + +Y G++ S+L+ Sbjct: 2 SMYVLKRNGRRESVHFDKITSRVSKLCYGLDAKHVDPVIISQKVIQGVYPGVTTSELDEL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ + + P+Y+ + AR + L + + + Y + E Sbjct: 62 AAQTAASFATQHPDYSILAARVSVSNLHKMTIARFSDLVE--------VFYNYKHPKTGE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ L + + RDF ++Y G + L Y L ++G E PQ Sbjct: 114 PASLISEEVYQIVQKHKDELDGAIVHARDFEYDYFGFKTLEKSYLLKVDGKIAERPQLML 173 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380 MRV++G+ + + +E YN LS +F +TPTLFN+GT PQ+SSCFL T+ D + Sbjct: 174 MRVSVGIHGDDIPRV---IETYNFLSERYFTHATPTLFNAGTNMPQMSSCFLMTMKEDSI 230 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ A+++KY+GG+G VR ++I GTNG S G++P L+V N+TA V+Q Sbjct: 231 DGIYDTLKNCAVISKYAGGIGLAIHNVRASQSYIRGTNGSSNGIVPMLRVFNNTARYVDQ 290 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KRKG++ YLE WH DV FLDLRKN G++ R D+ A W+PDLFMKRV N W Sbjct: 291 GGGKRKGSIAIYLEPWHADVFAFLDLRKNHGNESDRARDLFFAMWVPDLFMKRVKDNGTW 350 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P+E L D +G EFE YE YER E KV + I A LW +L ETG P Sbjct: 351 SLLCPNECPGLADCFGDEFEALYERYER-----EGKVRQTIKAQQLWFAILDSQVETGTP 405 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--- 616 ++ FKD CN +S QQ++G + SNLCTEI ++ +E AVCNL SI+L Q+ Sbjct: 406 YMLFKDHCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEAAVCNLASISLSKLVVPGQYGQG 465 Query: 617 ---DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D++KL + L+ +ID N + IE+A++SN HR IG+G+ G +L IP Sbjct: 466 GSFDFEKLREVSGVVTKNLNRIIDRNFYPIEEARRSNMRHRPIGIGVQGLADCFQMLRIP 525 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + SPEA ++ + E I F A +AS +LA G Y S+ GS +G D Sbjct: 526 FDSPEARKLNTDIFETIYFGACTASCDLAAVDGHYESYPGSPSSKGQLQFDLWN------ 579 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++R W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + Sbjct: 580 ----VQPSNRWDWASLKAKIAEHGIRNSLLVAPMPTASTAQILGNNESTEPFTSNMYNRR 635 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 ++G+FTVVN L+ EL R +W E + + + +GSI N+ IP ++++I T +EI Sbjct: 636 VLAGEFTVVNKHLLRELTARGIWTENVRNRIIAENGSIQNVPEIPVEIREIFKTVWEIPQ 695 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +++ A+ R +I Q+QSLN+++ +P+ KKL ++ AW GLKT YYLR+R Sbjct: 696 RAILDMAADRAPYICQSQSLNVHIADPNSKKLTSMHFYAWQKGLKTGMYYLRTRPKADAI 755 Query: 913 KSTLKGVDGKLNAVP--------------VTDPNSSTHSLGIPSSCTSDTE--CEVC 953 K T+ N + P +T G T D E C C Sbjct: 756 KFTVDQEQLVSNKMKEVKLVDKENSSNMVTPPPPGATAMKGTQGLTTEDEEDMCLSC 812 >gi|322696603|gb|EFY88393.1| ribonucleoside-diphosphate reductase large chain [Metarhizium acridum CQMa 102] Length = 905 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 288/809 (35%), Positives = 437/809 (54%), Gaps = 33/809 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHVDPVAITQKVISGVYGGVTTVQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNERA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 113 SPMISKDTYECVMRHKDELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E+ +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + Sbjct: 173 RVAVGIWGDNIERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D YG+EFE YE YER E K R + A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYER-----EGKGRRTVRAQKLWYSILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L A N ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYNEGRYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID+N + +++A+ SN HR IG+G+ G A L +P+ SPE Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNYYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A E+ + E I A++AS+ELA+E+G YS+FKGS +G+ D + Sbjct: 525 ARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + WD LK+++K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --SDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW +AM + + +GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ +PS K+ ++ W +GLKT YYLR+++A + + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 + V + Sbjct: 755 QEALMVADANVGKDRLPKKRTAPAGTSYM 783 >gi|190346673|gb|EDK38820.2| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC 6260] Length = 863 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 276/798 (34%), Positives = 429/798 (53%), Gaps = 35/798 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + ++ LY + Sbjct: 61 AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVSKE--------LYDYINPKTDLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + ++RDF + Y G + L Y L ING E PQ M Sbjct: 113 SPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + EK +E YNL+S +F +PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVAVGIHGDDIEKV---IESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +RG GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EF+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L ++YG EFE YE YER E + I A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLPEVYGDEFEALYEKYER-----EGRGRSTIKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN ++ Q+++G++ SSNLC EI SS EE AVCNL SI L + + + Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++DKL +T L+ +ID N + + +A++SN +R I LG+ G A L +P+ S Sbjct: 465 NFDKLHEVTKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ AS+ELAQ+ G Y S++GS QG+ D Sbjct: 525 QEAKELNIQIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L LW+++M +++ ++GSI N+ IPD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 LKGVDGKLNAVPVTDPNS 933 + V Sbjct: 755 VDSSTSVNAGKTVATLEK 772 >gi|189501949|ref|YP_001957666.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus 5a2] gi|189497390|gb|ACE05937.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus 5a2] Length = 790 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 290/815 (35%), Positives = 443/815 (54%), Gaps = 33/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S ++ +E+ C+GL ++ + + +YD ++ +L+ Sbjct: 1 MLVVKRDGRYESVKFDKITARIEKLCTGLNTDYINPVDIAMKVIAGIYDKVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + ++ K P+Y + AR + L + ++ + M+ LY + E Sbjct: 61 AEIAASMATKHPDYTVLAARIAVSNLHK--------VTSESFSNTMKWLYTYIDPKTGEN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + Y+RD+ ++Y G + L Y L ING +E PQ M Sbjct: 113 ASLIASDVYKVIREHAALLDKTIVYKRDYDYDYFGFKTLERSYLLKINGKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ E + A++ Y+LLS F +TPTLFN+GT PQLSSCFL T+ D + Sbjct: 173 RVAVGIH---KEDIEAAIQTYHLLSERWFTHATPTLFNAGTPKPQLSSCFLLTMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A +++ +GG+G +R G++I GTNG S G++P L+ + TA V+QG Sbjct: 230 GIYDTLKQCAQISQSAGGIGLSIHNIRATGSYIKGTNGISNGIVPMLRNFDMTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G +RKG+ YLE WH D+ EFLDLRKN G + R D+ A WIPDLFM+RV N W+ Sbjct: 290 GGRRKGSFAIYLEPWHSDIFEFLDLRKNHGKEELRARDLFYALWIPDLFMQRVENNEEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D YG+EFE Y+ YER E K + + A LW +L ETG P+ Sbjct: 350 LFCPNESPGLADCYGEEFERLYKKYER-----EGKARKSVKAQELWFAILEAQIETGMPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619 + +KD N +S QQ++G + SSNLCTEI +S EE AVCNL SI L +FD+ Sbjct: 405 MLYKDSANRKSNQQNLGTIKSSNLCTEIIEFTSPEEVAVCNLASIALPKFINQAGKFDHQ 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + L+ +IDIN + + +A+ SN HR IG+G+ G L +P+ SPEA Sbjct: 465 KLYEITYVITKNLNKIIDINHYPVPEARTSNFRHRPIGIGVQGLADTFLRLRMPFDSPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I F A++AS +LA++ G Y +FKGS +G+F D G+ Sbjct: 525 RGLNKDIFETIYFAAMTASKDLAKQYGPYETFKGSPISKGIFQFDMWGVEP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + R W+ L+K V+ G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 576 SSGRWDWETLRKEVQLHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEF 635 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L LWDE M ++L +GS+ I+RIP +K++H T +EI +I+ Sbjct: 636 IVVNKHLLTDLINLGLWDENMKNELIAANGSVQRIDRIPQHIKELHRTVWEIPQKAIIDM 695 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +I Q+QS+N++L + + KL ++ AW GLKT YYLR+R A K TL+ Sbjct: 696 AADRGAFICQSQSMNIHLLDANFAKLTSMHFYAWKKGLKTGLYYLRTRPAADAIKFTLQK 755 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 LN +PV + + +C VC Sbjct: 756 EQA-LNDIPV-PQKKVEQQVSMVCDAEDSEDCLVC 788 >gi|260947674|ref|XP_002618134.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720] gi|238848006|gb|EEQ37470.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720] Length = 858 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 270/798 (33%), Positives = 430/798 (53%), Gaps = 35/798 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ ++ C GL V + V +Y G++ +L+ Sbjct: 1 MFVIKRDGHKEPVRFDKITARIQRLCYGLDSDHVDAVAVTQRVISGVYHGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + + LY + Sbjct: 61 AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVA--------KILYEYINPKTDLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF + Y G + L Y L +NG E PQ M Sbjct: 113 SPMISEETYKIICENADELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + E+ +E YNL+S +F +PTLFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAVGIHGNDIERV---IETYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFAIYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D+YG EFE YE YER E + + A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLADVYGDEFEALYEKYER-----EGRGRSTVKAQKLWYSILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN ++ Q+++G++ SSNLC EI SS EE AVCNL SI L +++ + Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDASSSWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++DKL + R L+ +ID N + +E+A++SN +R I LG+ G A L +P+ S Sbjct: 465 NFDKLHEVTKVVTRNLNRIIDRNFYPVEEARRSNMRNRPIALGVQGLADAFMSLRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ AS+ELAQE G Y +++GS +G+ D Sbjct: 525 QEAKELNIQIFETIYHAAVEASIELAQEEGPYETYEGSPASKGLLQYDLWDRKPSEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQNLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN ++ +L +W++ M +++ ++GSI ++ +PD++K+++ T +EI + Sbjct: 635 GEFQIVNPHMLKDLVDLGIWNDNMKNNIIANNGSIQSLPNVPDEIKRLYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 LKGVDGKLNAVPVTDPNS 933 + + Sbjct: 755 VDQNSASAAGKTIASLEK 772 >gi|319953270|ref|YP_004164537.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga algicola DSM 14237] gi|319421930|gb|ADV49039.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga algicola DSM 14237] Length = 825 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 291/800 (36%), Positives = 441/800 (55%), Gaps = 27/800 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V + C GL + V V + +YDG++ S+L+ Sbjct: 1 MYVLKRDGRKEPMMFDKITARVRKLCYGLNELVDPIKVSMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S T+ P++AK+ AR + L + + M+ LY R ++ Sbjct: 61 EISATMTTTHPDFAKLAARISVSNLHKNTKKSFADT--------MKDLYEYVNPRNGKKS 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + +L + + Y RDF ++Y G + L Y L ING E PQ MR Sbjct: 113 PLLSDEVFKVISENAAFLDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + + VE Y L+S F +TPTLFNSGT PQ+SSCFL + DD + G Sbjct: 173 VSVGIHLDD---LEAVVETYELMSKKFFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAQISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLQVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ EFLDL+KN G + R D+ A WIPDLFM+RV N WTL Sbjct: 290 GKRKGSFAIYVEPWHADIYEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEEWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E DL + + FE Y YE E K + + A LW K+L ETG P++ Sbjct: 350 MCPNECPDLFKHHSEVFETMYLKYEA-----ENKGRKTVKARDLWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N +FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGEFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + R L+ VID N + +++A+ SN HR IGLG+ G A +L +P+ S A Sbjct: 465 FRVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKA 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+E+A+E G YSS++GS +G F + G+ E + Sbjct: 525 LNQEIFETLYFAAVTASMEMAKEEGPYSSYEGSPISEGEFQYNLWGIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R WD+L+K VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V Sbjct: 578 GRWDWDKLRKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LW+E++ +L +GSI +I+ IP D+K+++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVHLGLWNESLKQELMRANGSIQHIDIIPQDIKELYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR++SA K TL Sbjct: 698 QRGYFIDQSQSLNLFMEGANFSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNTK 757 Query: 921 GKLNAVPVTDPNSSTHSLGI 940 K V V + + Sbjct: 758 KKEVPVSVAADAEIVAATPV 777 >gi|146418447|ref|XP_001485189.1| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC 6260] Length = 863 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 276/798 (34%), Positives = 429/798 (53%), Gaps = 35/798 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLDTAHVDAVAITQRVISGVYQGVNTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + ++ LY + Sbjct: 61 AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVSKE--------LYDYINPKTDLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + ++RDF + Y G + L Y L ING E PQ M Sbjct: 113 SPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + EK +E YNL+S +F +PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVAVGIHGDDIEKV---IESYNLMSQRYFTHGSPTLFNAGTPSPQMSSCFLVAMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +RG GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRGTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EF+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L ++YG EFE YE YER E + I A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLPEVYGDEFEALYEKYER-----EGRGRSTIKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN ++ Q+++G++ SSNLC EI SS EE AVCNL SI L + + + Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++DKL +T L+ +ID N + + +A++SN +R I LG+ G A L +P+ S Sbjct: 465 NFDKLHEVTKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ AS+ELAQ+ G Y S++GS QG+ D Sbjct: 525 QEAKELNIQIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L LW+++M +++ ++GSI N+ IPD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 LKGVDGKLNAVPVTDPNS 933 + V Sbjct: 755 VDLSTSVNAGKTVATLEK 772 >gi|328770641|gb|EGF80682.1| hypothetical protein BATDEDRAFT_16482 [Batrachochytrium dendrobatidis JAM81] Length = 796 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 289/820 (35%), Positives = 437/820 (53%), Gaps = 37/820 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + + C GL V V + +Y G++ +L+ Sbjct: 1 MFVYKRDGRRERVAFDKITSRINKLCYGLDMNYVDPAEVAQKVVTGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L K P+YA + AR + L +E MQ LY + + Sbjct: 61 AETTAYLTTKHPDYAILAARIAISNLHKETKKQFSSV--------MQDLYEYVNPKNNKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + L + + Y+RDF + + G + L Y L IN E PQ M Sbjct: 113 SPMISKTTFDCILKNADRLNSAIIYDRDFNYNFFGFKTLERSYLLRINRKTAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + + +E YNL+S +F ++PTLFN+GT +PQ+SSCFL T+ DD + Sbjct: 173 RVAVGIHGDD---VEAVIETYNLMSEKYFTHASPTLFNAGTPNPQMSSCFLLTIEDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYSTLKTCAMISKTAGGIGLNVHKIRSSGSYIAGTNGLSNGIIPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKNTG + R D+ A WIPD+FM+RV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D++G EF+ YE YER E + + I A LW +L ETG P+ Sbjct: 350 LFCPAEAPGLDDVWGDEFDALYEKYER-----EGRARKIIKAQKLWYAILDSQSETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615 + +KD CN +S QQ++G + SNLCTEI SS +E AVCNL S+ L + Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLALPNFVIKDTTGAPV 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+DK+ T + A L+ +I++N + +E+AK+SN HR IGLG+ G + +P+ Sbjct: 465 FDFDKMIDTTKIATYNLNKIINLNYYPVEQAKRSNMRHRPIGLGVQGLADTFIKMRMPFD 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 SPEA ++ + E I F A++AS ELA+ G Y ++ GS +G+ D Sbjct: 525 SPEAKKLNIQIFEAIYFAALTASCELAKRDGPYETYSGSPMSKGIIQPDMWN-------- 576 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + + + W L+ + G+RNS +A PTA+ + I G +++ +P N+Y++ + Sbjct: 577 --VKVSDQFDWPTLRANIAKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRRVL 634 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F +VN L+ +L + LW+E+M + + +GSI NI IP LK I+ T +EI Sbjct: 635 SGEFQIVNQHLLKDLTELGLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQKV 694 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ A+ R +IDQ+QSLN++L E + KL ++ W GLKT YYLRSR A K Sbjct: 695 IIDMAADRGAFIDQSQSLNIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAIKF 754 Query: 915 TLKGVDGKLNAVPVTDPNSSTHS-LGIPSSCTSDTECEVC 953 T+ A + +S ++ + S + C C Sbjct: 755 TVDKQSLTQGAEDKNNVVASVNNMTDMLCSLENRDACMSC 794 >gi|301112881|ref|XP_002998211.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora infestans T30-4] gi|262112505|gb|EEY70557.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora infestans T30-4] Length = 793 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 275/816 (33%), Positives = 437/816 (53%), Gaps = 32/816 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ + + C GL V + + + +Y G++ S+L+ Sbjct: 1 MYVVKRDGRREDVKFDKITARITKLCYGLNPDYVDAIKISQKVVAGVYPGVTTSELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+++K+ AR + L + K ++ + + Sbjct: 61 AETAAYQSTQHPDFSKLAARIAVSNLHKNT--------NKVFSDNIEVFHKNAHEKTGAA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + ++RDF ++Y G + L Y +NG +E PQ + Sbjct: 113 APLIADDVYEIVMQHKDELNSAIIHDRDFEYDYFGFKTLERGYLFRVNGKVVERPQQMIL 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ A+E Y L+S F +TPTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVALGIH---KSDITSALETYELMSQKFFTHATPTLFNAGTPRPQLSSCFLLAMQDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A ++K++GG+G +R ++I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYDTLKQCACISKWAGGIGISMHNIRATNSYIRGTNGSSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH DV EFLDLRKN G++ R D+ A W+PDLFMKRV N W+ Sbjct: 290 GGKRKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANGKWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L++ +G EFE YE YE E + + I+A LW +L ETG P+ Sbjct: 350 LFCPNEAPGLYECWGDEFETLYEKYE-----TEGRARKTINAQQLWFAILDAQIETGVPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S QQ++G + SSNLC E+ +S +E AVCNL S+ L + FDY K Sbjct: 405 MLYKDAANRKSNQQNLGTIRSSNLCCEVMEYTSPDEVAVCNLASVALPKFVEDAVFDYRK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ R L+ VID+N + + +A+KSN HR IG+G+ G A L++ P+ SP+A Sbjct: 465 LYEVVKVITRNLNKVIDVNYYPVAEARKSNMRHRPIGIGVQGLADAFILMNYPFESPQAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E+ E I F A+ S+E+A E G Y +F+GS +G+F D G+ + Sbjct: 525 ELNKNIFETIYFAAMETSMEIAVELGPYETFQGSPASKGIFQFDMWGVTPQ--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W LK V G+RNS +A PTA+ A I G ++SI+P N+Y + ++G+FT Sbjct: 576 SGLWNWAALKDDVIKHGLRNSLLVAPMPTASTAQILGNNESIEPYTSNMYNRRVLAGEFT 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN L+ EL + +W + + + GS+ I+ IP+D+K+ + T +EI +++ + Sbjct: 636 IVNKHLMKELIELGIWTPEVRNQILNDGGSVQKIKTIPEDVKEKYKTVWEIKQKAVLDLS 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG- 918 + R +I Q+QSLN+++ +P+ KL ++ AW GLKT YY+R R + T+ Sbjct: 696 ADRGAYICQSQSLNIHIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPKADAIQFTVDKQ 755 Query: 919 -VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +D + T + + + + + EC VC Sbjct: 756 GIDLQRAKEEATKTAPTPAAETVTRAGDDEDECLVC 791 >gi|225012155|ref|ZP_03702592.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-2A] gi|225003710|gb|EEG41683.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-2A] Length = 814 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 292/835 (34%), Positives = 448/835 (53%), Gaps = 49/835 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ + + GL V V + +YDG++ S+L+ Sbjct: 1 MFVLKRDGRKEPIMFDKITARIRKLNYGLNPLVDPVRVAMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + T+ P+YAK+ AR + L + +K+ M LY R ++ Sbjct: 61 EIAATMTTTHPDYAKLAARISVSNLHKNT--------KKSFSETMTDLYKYVNPRTGKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y RDF +++ G + L Y L +NG +E PQ MR Sbjct: 113 PLLSDEVHDIIQKNADKLDSSIIYNRDFGYDFFGFKTLERSYLLKLNGVIVERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L E + A+E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + G Sbjct: 173 VSIGIHL---EDIEAALETYELMSKRYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ +FL+L+KN G + R D+ A W PDLFMKRV +NA WTL Sbjct: 290 GKRKGSFAIYVEPWHADIFDFLELKKNHGKEEMRARDLFYAMWTPDLFMKRVEENADWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E DL++++G EF+ Y YE E + R I A LW K+L ETG P++ Sbjct: 350 MCPNECPDLYNVHGDEFDAMYLKYE-----SEGRGRRTIKARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + FD+ L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKDGAFDHQAL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + L+ VID N + + +A+ SN HR +GLG+ G A +L +P+ S EA + Sbjct: 465 YDVTVRVTKNLNRVIDRNYYPVIEAQNSNFRHRPVGLGVQGLADAFIMLRLPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS E A+ G Y ++KGS G F + G+ E + Sbjct: 525 LNQEIFETLYFAAVTASSEEAKREGPYETYKGSPIANGEFQHNLWGIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W L+K VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V Sbjct: 578 GRWDWAALRKTVKKQGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L R LW+E M +L ++GS+ +IE IP+DLK+++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVDRGLWNEDMKQELMRNNGSVQSIEGIPEDLKELYKTVWEMSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK-GV 919 +R +IDQ+QSLNL+++ + KL ++ W GLKT YYLR++SA K TL Sbjct: 698 QRGYFIDQSQSLNLFMEGATMAKLTSMHFYGWKSGLKTGMYYLRTKSAVDAIKFTLDTKS 757 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSC---------------------TSDTECEVC 953 K+ V ST + G + D +C +C Sbjct: 758 KAKVPEVEAAVGAVSTATAGKAAQAPVPVEPLSPQELKQMLAQAKEGEDDDCLMC 812 >gi|116200095|ref|XP_001225859.1| ribonucleoside-diphosphate reductase large chain [Chaetomium globosum CBS 148.51] gi|88179482|gb|EAQ86950.1| ribonucleoside-diphosphate reductase large chain [Chaetomium globosum CBS 148.51] Length = 912 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 286/809 (35%), Positives = 434/809 (53%), Gaps = 33/809 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ + L+ Sbjct: 1 MYVRKRDGRQERVQFDKITARVSRLCYGLDVDHVDPVAITQKVISGVYGGVTTAQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSAVVSDLYHYVNPKNERA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 113 SPMIAKETYECVMRHKEELDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E+ +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + Sbjct: 173 RVAVGIWGDNVERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ +L+ AM++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDSLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIIPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D YG EFE YE YE+ + + I A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADCYGDEFEALYEKYEKA-----GRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L NQ +D+ Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYNQGVYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID+N + +++A SN HR IG+G+ G A L +P+ SPE Sbjct: 465 QKLHEVAQVVVRNLNKIIDVNHYPVQEAYNSNMRHRPIGVGVQGLADAFLALRMPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A E+ + E I A++AS +LA+E+G YS+++GS QG+ D + Sbjct: 525 ARELNKQIFETIYHAALTASCDLAKEQGTYSTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK ++K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TGLWDWDALKAKIKEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPTDIKALYKTVWEISQRTVVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EPS K+ ++ W +GLKT YYLR+++A + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMREPSMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 ++ V+ S P+ Sbjct: 755 QEALRVQDTNVSKGVSGLKKRAPPAGSYM 783 >gi|298207003|ref|YP_003715182.1| probable ribonucleoside-diphosphate reductase large chain [Croceibacter atlanticus HTCC2559] gi|83849637|gb|EAP87505.1| probable ribonucleoside-diphosphate reductase large chain [Croceibacter atlanticus HTCC2559] Length = 840 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 282/808 (34%), Positives = 444/808 (54%), Gaps = 27/808 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V++ C GL + V V + +YDG++ SDL+ Sbjct: 1 MDVLKRDGRREPVMFDKITARVKKLCYGLNELVDPVKVAMRVIEGLYDGVTTSDLDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ ++ P+YAK+ AR + L ++ T + M LY R ++ Sbjct: 61 ETAASMTVSHPDYAKLAARISVSNLHKDTKKTFSEV--------MTDLYEYVNPRTGKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y RD+ ++Y G + L Y L +NG E PQ MR Sbjct: 113 PLLSDEVYKVIQDNKDRLDSTIIYNRDYGYDYFGFKTLERSYLLKLNGKIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + A+E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + G Sbjct: 173 VSVGIHLDD---LDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMQDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGIVPMLQVYNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ +FLDL+KN G + R D+ A WIPDLFMKRV ++ WTL Sbjct: 290 GKRKGSFAIYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGNWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E +L +++ +EF+ Y YE E K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPNLFNVHSEEFDELYLKYE-----SENKGRKTIKARVLWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGAFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + L+ VID N + +++A+ SN HR +GLG+ G A +L +P+ S EA Sbjct: 465 FRITKRVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKT 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+ELA E G YSS++GS +G F + G+ E + Sbjct: 525 LNQEIFETLYFAAVTASMELAIEEGPYSSYEGSPISKGEFQYNLWGIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W L+++V G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWDWAGLRQKVLENGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LW+ + + + +GSI NI+ IP DLK+++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVNLGLWNNDLKNAIMRANGSIQNIDGIPQDLKELYKTVYELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR+++A K T++ Sbjct: 698 HRGYFIDQSQSLNLFMENANYAKLTSMHFYAWKNGLKTGMYYLRTKAAVDAIKFTVEKAK 757 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 + + + + Sbjct: 758 KAEPQPQQQEVAAKAAETLQQAKTQLEP 785 >gi|73988083|ref|XP_862202.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 4 [Canis familiaris] Length = 822 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 288/841 (34%), Positives = 452/841 (53%), Gaps = 53/841 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQ-------------------------ADRGEIK 535 L P+E L +++G+EFE YE Y + + + + Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYERYGKNMKVIIFNHVFLLFGGSKFQNITLPFSYEKQGR 409 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S + Sbjct: 410 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKD 469 Query: 596 ETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR Sbjct: 470 EVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHR 529 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G+ G A L+ P+ SPEA + + E I + A+ AS +LA+E G Y +++GS Sbjct: 530 PIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGS 589 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +G+ D + W LK+++ G+RNS +A PTA+ A Sbjct: 590 PVSRGILQYDMWNVTPTEL----------WDWKLLKEKIAKYGVRNSLLIAPMPTASTAQ 639 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW+E M + + +GSI +I Sbjct: 640 ILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSI 699 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W Sbjct: 700 PEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWK 759 Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952 GLKT YYLR+R A + + TL + ++ + S + EC + Sbjct: 760 QGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCSLENREECLM 819 Query: 953 C 953 C Sbjct: 820 C 820 >gi|238882110|gb|EEQ45748.1| ribonucleoside-diphosphate reductase large chain [Candida albicans WO-1] Length = 854 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 276/794 (34%), Positives = 423/794 (53%), Gaps = 35/794 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T+ P+YA + AR + L ++ K + LY + Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVS--------KDLYEYINPKTGLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + + +E YNL+S F +P LFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAVGIHGNDIPRV---IETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D+YG EFE Y YE+ E + + I A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTKYEK-----ENRGRQTIKAQKLWYAILGAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN +S Q+++G++ SSNLC EI S+ +E AVCNL SI L + + Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++DKL + R L+ VID N + + +A++SN HR I LG+ G A L +P+ S Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ AS+ELA+E GAY ++ GS QG+ D Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+ + GMRNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L +W++AM S + ++GSI + IPD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A++ + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754 Query: 916 LKGVDGKLNAVPVT 929 + + V Sbjct: 755 IDQKIAETAGHTVA 768 >gi|68481362|ref|XP_715320.1| hypothetical protein CaO19.5779 [Candida albicans SC5314] gi|68481493|ref|XP_715255.1| hypothetical protein CaO19.13201 [Candida albicans SC5314] gi|7271006|emb|CAB77640.1| ribonucleotide reductase large subunit [Candida albicans] gi|46436871|gb|EAK96226.1| hypothetical protein CaO19.13201 [Candida albicans SC5314] gi|46436939|gb|EAK96293.1| hypothetical protein CaO19.5779 [Candida albicans SC5314] Length = 854 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 276/794 (34%), Positives = 423/794 (53%), Gaps = 35/794 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T+ P+YA + AR + L ++ K + LY + Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVS--------KDLYEYINPKTGLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + + +E YNL+S F +P LFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAVGIHGNDIPRV---IETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D+YG EFE Y YE+ E + + I A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTKYEK-----ENRGRQTIKAQKLWYAILGAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN +S Q+++G++ SSNLC EI S+ +E AVCNL SI L + + Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++DKL + R L+ VID N + + +A++SN HR I LG+ G A L +P+ S Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ AS+ELA+E GAY ++ GS QG+ D Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+ + GMRNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L +W++AM S + ++GSI + IPD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A++ + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754 Query: 916 LKGVDGKLNAVPVT 929 + + V Sbjct: 755 IDQKIAETAGHTVA 768 >gi|126662514|ref|ZP_01733513.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria bacterium BAL38] gi|126625893|gb|EAZ96582.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria bacterium BAL38] Length = 810 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 293/831 (35%), Positives = 466/831 (56%), Gaps = 45/831 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ +++ C GL D V + V + +YDG++ S+L+ Sbjct: 1 MYVVKRDGHKEPVMFDKITDRIKKLCYGLNDMVDAVKVAMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ ++ P+YA++ AR + L + K+ M +Y R +E Sbjct: 61 ETAASMTVSHPDYAQLAARIAISNLHKNT--------NKSFSETMNEMYHYVNPRTNQEA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + +L + + Y RDF ++Y G + L Y L ING +E PQ MR Sbjct: 113 PLISDEVYEVIKANAEFLDSHIIYTRDFNYDYFGFKTLERSYLLRINGKIVERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ + + + +E Y+L+S F +TPTLFN+GT PQ+SSCFL T+ DD + G Sbjct: 173 VSVGIHMND---LEAVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMKDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLAIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ YLETWH D+ EFLDL+KNTG + R D+ A W DLFMKRV ++A WTL Sbjct: 290 GKRKGSFAIYLETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E DL ++YG EFE Y +YE + K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPDLDNVYGDEFEALYTSYEA-----KGKGRKTIRARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI+L N +F+++ L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASISLPMFVENGKFNHELL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + R L+ VID N + +++A+ SN HR +GLG+ G A ++ +P+ S EA + Sbjct: 465 FTVTKRVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMMRLPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+E+A+E G YS+F+GS +G F + + E + Sbjct: 525 VNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPISKGEFQHNLWNIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W L+K V G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWDWASLRKEVMANGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+++L R LW+E + ++ H+GS+ +I+RIP DLK+++ T +E+ +I+ + Sbjct: 638 VNKHLLHDLVDRGLWNETLKQEIMRHNGSVQHIDRIPADLKELYKTVWEMSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL++ + + KL ++ AW GLKT YYLR+++A K TL Sbjct: 698 QRGYFIDQSQSLNLFMQDANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNDK 757 Query: 921 -------------GKLNAVPVTDPNSSTHSLGIPSSCTS-----DTECEVC 953 K+ A+ V + S + + +CE+C Sbjct: 758 VAAPIEVKPQTEVKKVEAIAVLEEPSEMTAEEYRAMVEMARNAGPEDCEMC 808 >gi|320582719|gb|EFW96936.1| Ribonucleoside-diphosphate reductase large chain 1 [Pichia angusta DL-1] Length = 862 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 269/807 (33%), Positives = 428/807 (53%), Gaps = 35/807 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ V C GL V + +Y G++ +L+ Sbjct: 1 MYVLKRDGRKEPVRFDKITARVSRLCYGLDPEHVEPVAITQRVISGVYHGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + + LY + + Sbjct: 61 AETAAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVDQ--------LYHYINPKNGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF++ Y G + L Y L I+G E PQ M Sbjct: 113 SPMISDETYRIVQEHADELNSAIVYDRDFSYNYFGFKTLERSYLLKIDGKVAERPQHMVM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + +E YNL+S F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 173 RVAIGIHGDDIPSV---IETYNLMSQKFFTHASPTLFNAGTPHPQMSSCFLVAMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKAAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA Y+E WH D+ +F+D+RKN G + R D+ A WIPDLFM+RV QNA WT Sbjct: 290 GNKRPGAFALYVEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEQNAEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L D+YG EF+ Y YE+ E + + + A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLADVYGDEFKELYTRYEK-----EGRGRQTVKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616 + +KD CN ++ Q+++G++ SSNLC EI SS EE AVCNL SI L A ++ + Sbjct: 405 MLYKDACNSKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPAFVESDDNTSWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +++KL + + L+ +ID N + + +A++SN +R I +G+ G L +P+ S Sbjct: 465 NFEKLHQITKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIAVGVQGLADVFMQLRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA E+ + E I A+ AS ELA G Y +F+GS QG+ D G Sbjct: 525 PEARELNIQIFETIYHGALEASAELAVRDGKYETFEGSPASQGILQFDLWGKKP------ 578 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T WD LK R++ G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 579 ----TDLWDWDSLKARIQKDGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L LW+++M + + +GS+ N+ +P +LK ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVNLGLWNDSMKNFIIKDNGSVQNLPNVPQELKDLYRTVWEIPQKSI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QS+N++L P+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRGAYIDQSQSMNIHLKNPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + + V N +P Sbjct: 755 VDQKSAATASSTVASLNKLKLKKYVPR 781 >gi|225011000|ref|ZP_03701466.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-3C] gi|225004907|gb|EEG42863.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria bacterium MS024-3C] Length = 827 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 288/803 (35%), Positives = 440/803 (54%), Gaps = 27/803 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V + C GL + V V + +YDG++ S+L+ Sbjct: 1 MYVLKRDGKNEPMMFDKITARVRKLCYGLNERVDPVKVSLRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + T+ P++AK+ AR + L + +K+ M+ LY R + Sbjct: 61 EIAATMTTTHPDFAKLAARISVSNLHKNT--------KKSFSETMEDLYKYVNPRNGKSS 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + + L + + Y RDF ++Y G + L Y L +NG +E PQ MR Sbjct: 113 PLLSDEVYQAIMDNAELLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ A+E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + G Sbjct: 173 VSVGIH---PTDMDSAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S GV+P LKV NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYISGTNGTSNGVVPMLKVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ +FLDL+KN G + R D+ A WIPDLFMKRV NA WTL Sbjct: 290 GKRKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAEWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E +L + + + F+ Y YE E K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPNLFNNHSEAFDELYLKYE-----SEGKGRKTIKARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L + FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKDGAFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + L+ VID N + +++A+ SN HR IGLG+ G A +L +P+ S EA + Sbjct: 465 FKVTKRVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + +E E + F A++AS+E A+ G Y S+KGS QG F + G+ E + Sbjct: 525 LNEEIFETLYFAALTASMEEAKADGPYQSYKGSPISQGEFQHNLWGIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W +L+K VK G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V Sbjct: 578 GRWDWAKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LWDE + +L +GS+ +I+ IP D+K+++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVALGLWDEGLKQELMRANGSVQHIDIIPQDIKELYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR+++A K TL Sbjct: 698 QRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTA 757 Query: 921 GKLNAVPVTDPNSSTHSLGIPSS 943 K V V + + + Sbjct: 758 KKDVPVSVAAEAEVAAATPVKAV 780 >gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex] Length = 798 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 292/822 (35%), Positives = 442/822 (53%), Gaps = 39/822 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ G + ++ +++ C GL V + + +Y G++ +L+ Sbjct: 1 MFVLKRGGRQEDVHFDKITSRIQKLCYGLNSDFVDPTAITMKVINGLYPGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L +E +K + LY + Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKET--------KKVFSEVIDDLYNMKNKITKKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 H ++ L + + Y+RDF F Y G + L Y L I+G +E PQ M Sbjct: 113 TPMISDFHHGIITKHSDKLNSAIIYDRDFNFNYFGFKTLEKSYLLKIDGKPVERPQHLMM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLF + T PQLSSCFL T+ DD + Sbjct: 173 RVSVGIHG---EDIDAAIETYNLLSEKWFTHASPTLFYAATPRPQLSSCFLLTMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYETLKQCAIISKSAGGIGLNVHCIRATGSYIAGTNGISNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +FLDL+KNTG + R D+ A WIPDLFM+RV + W+ Sbjct: 290 GNKRPGAFAIYLEPWHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D +G+EFE Y YE RK+ A LW ++ ETG P+ Sbjct: 350 LMCPHECPGLADTWGEEFEALYTKYEESGM-----YRRKVKAQQLWFAVIESQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619 I +KD CN +S QQ++G + SNLCTEI SS EE AVCNLGSI L ++ FD Sbjct: 405 ILYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKPDKTFDIP 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + R L+ +I+IN + + +AK+SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLKEVTKVLTRNLNKIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + E I + A+ AS ELA++ G Y S+ G +G+ D G+ Sbjct: 525 QLLNKHIFETIYYGALEASCELAEQLGTYESYPGCPVSKGILQYDMWGVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LKK++ G+RNS +A PTA+ A I G ++SI+ N+YV+ +SG+F Sbjct: 576 -TDLWDWAALKKKINEHGLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L + LW+E + + + ++GSI NI+ IPDDLK ++ T +EI +I+ Sbjct: 635 QVVNHHLLRDLTEGGLWNEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ +W +GLKT YYLR++ A S + T+ Sbjct: 695 AADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAASAIQFTVDK 754 Query: 919 VD-GKLNAVPVTD------PNSSTHSLGIPSSCTSDTECEVC 953 K+N V + + + S + +C +C Sbjct: 755 SKLKKMNGVDNSAGATNGNDEEKRNREAMVCSLQNRDDCLMC 796 >gi|307103606|gb|EFN51865.1| hypothetical protein CHLNCDRAFT_32953 [Chlorella variabilis] Length = 810 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 289/835 (34%), Positives = 448/835 (53%), Gaps = 53/835 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ G L + ++ + + GL +V + +Y G++ S+L+ Sbjct: 1 MYVVKRSGVLAPVSFDKITARISKLSYGLNPDFCDPVLVAQKVTTGVYKGVTTSELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +L P+YA + AR + L + L + + + H + E+ Sbjct: 61 AETAASLTATHPDYALLAARIAVSNLHKNTLKSFSETVKLMFSH--------VNPKNGEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L +++ Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 113 APLIDEKVYEIIMEHAERLDSEIVYDRDFDYDYFGFKTLERSYMLRVNGRVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ L E AVE Y+LLS F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVAVGIHL---EDVDAAVETYHLLSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKNDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A ++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECASISKSAGGIGLSMHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA Y E WH D+ ++LDLRKN G + R D+ A WIPDLFM RV N W+ Sbjct: 290 GGKRKGAFAMYCEPWHADIFDWLDLRKNHGKEEARARDLFYALWIPDLFMHRVEANGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G+EFE Y YER E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNESPGLADCWGEEFEALYSRYER-----EGRARKVIKAQQLWFAILEAQVETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------- 613 + +KD N +S QQ++G + SSNLCTEI SS EETAVCNL S+ L Sbjct: 405 MLYKDSANRKSNQQNLGTIKSSNLCTEIIEYSSPEETAVCNLASVALPRFVREKEPSGRE 464 Query: 614 ------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 FD+DKLA A R L+ +ID+N + +E A++SN HR IGLG+ Sbjct: 465 GKKLVGSLDAEGRYFDFDKLAEVTAVATRNLNKIIDVNYYPVETARRSNMRHRPIGLGVQ 524 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G LL +P+ SPEA E+ + E I F A+ S++L++ G YS+++GS +G+ Sbjct: 525 GLADTFLLLGLPFDSPEAAELNRQIFETIYFAALRTSMQLSKAEGPYSTYEGSPVSKGIL 584 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D G + + R WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 QPDMWG----------VKPSDRWDWDGLRRDIAQNGVRNSLLVAPMPTASTSQILGNNEC 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+YV+ +SG+F VVN L+++L + LWD + +++ GS+ +++ IP++L Sbjct: 635 FEPYTSNIYVRRVLSGEFVVVNQHLLHDLTRLGLWDTDVKNEIVAASGSVADLD-IPNNL 693 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K+++ T +EI L++ A+ R +IDQ+QS N+++ +P+ KL ++ AW GLKT Sbjct: 694 KELYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDPNFGKLTSLHFYAWKKGLKTGM 753 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVP--VTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ + + +++ + S + C +C Sbjct: 754 YYLRSRAAADAIKFTVDQQALQRRKSERLAKENKATSDMAAMVCSLENKDACVMC 808 >gi|70994760|ref|XP_752157.1| ribonucleotide reductase large subunit Rnr1 [Aspergillus fumigatus Af293] gi|66849791|gb|EAL90119.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus fumigatus Af293] gi|159124928|gb|EDP50045.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus fumigatus A1163] Length = 859 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 279/806 (34%), Positives = 430/806 (53%), Gaps = 33/806 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNKQP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L ING E PQ M Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVAVGIHGN---NIEKAIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV N WT Sbjct: 290 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EF+ YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFDALYERYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +ID+N + + +AKKSN HR I LG+ G A L +P+ S E Sbjct: 465 GKLHEVVQVLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS ELA+E G Y +++GS QG+ D Sbjct: 525 ARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKAKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ KL ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943 K+ V N++ S Sbjct: 755 QEQLKVADTNVARANAAYKKRAAGSV 780 >gi|308501413|ref|XP_003112891.1| CRE-RNR-1 protein [Caenorhabditis remanei] gi|308265192|gb|EFP09145.1| CRE-RNR-1 protein [Caenorhabditis remanei] Length = 786 Score = 700 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 282/818 (34%), Positives = 441/818 (53%), Gaps = 43/818 (5%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLE 199 ++ DG + + ++ +++ GL + V V + +Y G++ +L+ Sbjct: 4 HNSTYVVKRDGRMEDVHFDKITSRIQKLSYGLNMEFVDPVAVAIKVISGLYKGVTTVELD 63 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ ++ + P YA + AR + L ++ K M+ L+ + Sbjct: 64 NLAAETAASMTTQHPEYALLAARIAVSNLHKKT--------NKVFSEVMKTLHEFHHPHT 115 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 + ++++ + L + + Y+RD+++ Y G + L Y L IN +E PQ Sbjct: 116 GKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQ 175 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378 MRV++G+ E A+E YNL+S + ++PTLFNSGT PQ+SSCFL T+ D Sbjct: 176 MLMRVSIGIHG---EDIAAAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSED 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G + +R G+ I GTNG S G+IP L+V N+TA V Sbjct: 233 SILGIYDTLKQCALISKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYV 292 Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QG KR GA YLE WH DV EF+ LRKNTG + R D+ A WIPDLFMKRV ++ Sbjct: 293 DQGGNKRPGAFAIYLEPWHADVFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQ 352 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P E L D +G+EFE Y YE E +V + + A LW +++ ETG Sbjct: 353 NWSLMCPCECPGLDDCWGEEFEALYAKYEA-----EGRVRKTVKARKLWEHIVSNQIETG 407 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQF 616 P+IT+KD N +S QQ++G + SNLCTEI S+ +E AVCNL SI L + +F Sbjct: 408 LPYITYKDAANRKSNQQNLGTIKCSNLCTEIMEYSAPDEIAVCNLASIALNRYVTPEKKF 467 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KLA + + L+ +ID+N + +E+A+ SN HR IGLG+ G L+ P+ S Sbjct: 468 DFKKLAEVTKVITKNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTS 527 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A ++ E I + A+ AS ELA+ G YS+++GS +G D G+ Sbjct: 528 KQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTP------ 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 T + W L+K++ T G+RNS MA PTA+ A I G ++SI+P N+Y + +S Sbjct: 582 ----TDQCDWAALRKKIATHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLS 637 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDF +VN ++ +L +R LW + M + L ++GSI NI IP D+K+++ T +EI + Sbjct: 638 GDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPEIPADIKELYLTVWEISQKEI 697 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 IE A+ R +IDQ+QSLN+++ +PS + ++ W GLKT YYLR++ A + + T Sbjct: 698 IEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKQGLKTGMYYLRTKPAVNAVQFT 757 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + K P D C +C Sbjct: 758 VDKGALKAKVDPKVAALQQQ-----------DEGCLMC 784 >gi|85081938|ref|XP_956818.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa OR74A] gi|30316299|sp|Q9UW15|RIR1_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase large subunit gi|11256439|pir||T51069 ribonucleoside-diphosphate reductase large chain (un-24gene) [imported] - Neurospora crassa gi|9368573|emb|CAB98233.1| ribonucleoside-diphosphate reductase large chain (un-24) [Neurospora crassa] gi|28917896|gb|EAA27582.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa OR74A] Length = 929 Score = 700 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 280/805 (34%), Positives = 430/805 (53%), Gaps = 33/805 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ + L+ Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY R + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------ISELYNYVNPRTGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D+YG EFE YE YE+ E K + + A LW +L ETG+P+ Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L A +D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +IDIN + +++A SN HR IG+G+ G A L +P+ S Sbjct: 465 KKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDA 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS +LA+E+G Y++++GS QG+ D + Sbjct: 525 ASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T+ W LK +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L + LW +AM + + GSI NI+ IP+D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVK 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942 + V +S P+ Sbjct: 755 QEALRATDDRVAPAHSGLKKRSPPA 779 >gi|5733808|gb|AAD49743.1| ribonucleotide reductase large subunit [Neurospora crassa] Length = 929 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 280/805 (34%), Positives = 430/805 (53%), Gaps = 33/805 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ + L+ Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY R + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------ISELYNYVNPRTGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D+YG EFE YE YE+ E K + + A LW +L ETG+P+ Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L A +D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +IDIN + +++A SN HR IG+G+ G A L +P+ S Sbjct: 465 KKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDA 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS +LA+E+G Y++++GS QG+ D + Sbjct: 525 ASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T+ W LK +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L + LW +AM + + GSI NI+ IP+D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVK 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942 + V +S P+ Sbjct: 755 QEALRATDDRVAPAHSGLKKRSPPA 779 >gi|303273186|ref|XP_003055954.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462038|gb|EEH59330.1| predicted protein [Micromonas pusilla CCMP1545] Length = 816 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 290/840 (34%), Positives = 442/840 (52%), Gaps = 57/840 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ + + GL +V + +Y G++ S+L+ Sbjct: 1 MYVVKRDGRQEPVHFDKITARINKLAYGLNQDHCDPVLVAQKVASGVYKGVTTSELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ K P+YA++ AR + L + L + + M+ ++ R + Sbjct: 61 AETAASMTSKHPDYAQLAARIAVSNLHKNTLKSFSET--------MKVMHEHVNKRNGKW 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + ++ Y+RDF ++Y G + L Y L ++G +E PQ M Sbjct: 113 SPLLADDVYEIIKANAATFDAEIVYDRDFDYDYFGYKTLERSYLLRVDGKIVERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++A++ Y++LS ++PTLFNSGT PQLSSCFL + D + Sbjct: 173 RVAIGIHK----DVEKAIDTYHMLSERWMTHASPTLFNSGTPRPQLSSCFLIAMKEDSIE 228 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A ++K +GG+G +R ++I GTNG S G+IP L+V NDTA V+QG Sbjct: 229 GIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 288 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ ++LDLRKN G + R D+ W DLFM+RV N WT Sbjct: 289 GGKRKGAFAVYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMRRVESNGDWT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D +G EFE Y +YE Q K + I A LW +L ETG+P+ Sbjct: 349 LMCPNECPGLADSWGAEFEKLYTSYEEQ-----GKGKKTIKAQQLWFAILEAQVETGNPY 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615 + FKD CN +S QQ++G + SSNLCTEI +S EETAVCNL SI L Sbjct: 404 MLFKDACNSKSNQQNLGTIRSSNLCTEIVEFTSPEETAVCNLASIALPRFVVEENPASPT 463 Query: 616 ------------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 FD+ KLA R R L+ +ID+N + +E A++SN HR IG Sbjct: 464 GRTEAKKLRGSLGAASRTFDHAKLAEITRKVTRNLNRIIDVNYYPVETARRSNMRHRPIG 523 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+ G LL + + SPEA ++ E E I F A++ S +A G Y ++ GS Sbjct: 524 LGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNAIAAVDGHYETYPGSPVS 583 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 +G+ D G+ M R W L+ ++ T G+RNS +A PTA+ + I G Sbjct: 584 KGILQPDMWGVT-------EMPGGDRHDWAALRAKIATSGVRNSLLVAPMPTASTSQILG 636 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 ++ +P N+Y + +SG+FTVVN L+N+L + LWD + ++L ++GS+ ++ I Sbjct: 637 NNECFEPYTSNIYARRVLSGEFTVVNQHLLNDLTELGLWDPKLKNELIANNGSVQGLD-I 695 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 PD LK I+ T +EI L++ A+ R +IDQ+QS N+++ + + KL ++ AW GL Sbjct: 696 PDHLKAIYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKGL 755 Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH---SLGIPSSCTSDTECEVC 953 KT YYLRSR+A K T+ GK NA DP+ + + S + EC +C Sbjct: 756 KTGMYYLRSRAAADAVKFTVDQA-GKGNAQKSADPDMEEEARMAAKLACSLANKDECVMC 814 >gi|241951096|ref|XP_002418270.1| ribonucleoside-diphosphate reductase large chain 1, putative; ribonucleotide reductase large subunit 1, putative; ribonucleotide reductase r1 subunit 1, putative [Candida dubliniensis CD36] gi|223641609|emb|CAX43570.1| ribonucleoside-diphosphate reductase large chain 1, putative [Candida dubliniensis CD36] Length = 854 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 277/784 (35%), Positives = 424/784 (54%), Gaps = 35/784 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T+ P+YA + AR + L ++ K + LY + Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVS--------KDLYEYINPKTGLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFSYNYFGFKTLERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + + +E YNL+S F +P LFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAVGIHGNDIPRV---IETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D+YG EFE Y YE+ E + + I A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLADVYGDEFEELYTRYEK-----ENRGRQTIKAQKLWYAILGAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN +S Q+++G++ SSNLC EI S+ +E AVCNL SI L + +N + Sbjct: 405 MLYKDSCNNKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVESDQSNTWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++DKL + R L+ VID N + + +A++SN HR I LG+ G A L +P+ S Sbjct: 465 NFDKLHDVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ ASVELA+E GAY ++ GS QG+ D Sbjct: 525 QEARELNIQIFETIYHAAVEASVELAKEEGAYETYPGSPASQGLLQFDLWNRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+ + GMRNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQNLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L +W++AM S + ++GSI + IPD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A++ + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754 Query: 916 LKGV 919 + Sbjct: 755 IDQK 758 >gi|39978231|ref|XP_370503.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15] gi|145013418|gb|EDJ98059.1| hypothetical protein MGG_07000 [Magnaporthe oryzae 70-15] Length = 909 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 280/811 (34%), Positives = 432/811 (53%), Gaps = 33/811 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVRKRDGRQERVQFDKITARVSRLCYGLDPEHVDPVAITQKVISGVYGGVTTIQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ H+ + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSVVSDLFHY--------VNPKNGKL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 113 SPMIAQDTYDCVMRHKEDLDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E+ +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + Sbjct: 173 RVAVGIWGDNIERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D YG+EFE YE YE+ K + I A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEQA-----GKGRKTIKAQKLWYSILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L ++ +D+ Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYHKGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL + VR L+ +I++N + +++A+ SN HR IGLG+ G A L +P+ SPE Sbjct: 465 EKLHEVTQVVVRNLNKIIEVNYYPVQEARNSNMRHRPIGLGVQGLADAFLALRLPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS +LA+E+G YS+++GS QG+ D + Sbjct: 525 ARDLNKKIFETIYHAALTASCKLAEEQGPYSTYEGSPVSQGILQYDMWN----------V 574 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + WD LK +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 575 KPSDLWDWDALKANIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L + LW + M + + GSI NI IP+D KK++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVELGLWSDDMKNRIIAEGGSIQNIASIPEDTKKLYKTVWEISQRTVVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ +P+ K+ ++ W +GLKT YYLR+++A + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 +L V S S Sbjct: 755 QEALRLQDKAVAKERVLGKRAPPTGSYMSSP 785 >gi|148224574|ref|NP_001084312.1| ribonucleotide reductase M1 [Xenopus laevis] gi|49256098|gb|AAH74185.1| RRM1 protein [Xenopus laevis] Length = 797 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 283/821 (34%), Positives = 445/821 (54%), Gaps = 38/821 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL + V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARVAVSNLHKET--------KKIFSDVMEDLYNYVNPLNSKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ + G + L Y L ING E PQ M Sbjct: 113 SPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KTDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +FLDL+KNTG + +R D+ A WIPDLFMKR N W+ Sbjct: 290 GNKRPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRAENNLDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L +++G +FE YE YER E + + + A +W ++ ETG P+ Sbjct: 350 LMCPHECPGLEEVWGDKFEELYEKYER-----EGRTRKVVKAQQVWHAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + FD+ Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +I+IN + + +A+ SN HR IG+G+ G A L+ P+ S +A Sbjct: 465 KLADVTKVIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ +S ELA+E G Y +++G +G+ D + Sbjct: 525 QMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L ++ LW+E M + + ++GSI N+ IP DLK+++ T +EI +I Sbjct: 635 QIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VDGK------LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + + + S + EC +C Sbjct: 755 EKLKEKELITMETTEKDKEEKEKNKAAMVCSLENRDECLMC 795 >gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans] gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans] Length = 812 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 295/835 (35%), Positives = 443/835 (53%), Gaps = 42/835 (5%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192 K+ + KL ++ DG + ++ +++ C L V + + +Y G Sbjct: 2 LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+ + L P+YA + AR + L +E +KA + LY Sbjct: 62 VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLY 113 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 ++ H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 114 NHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRVA+G+ E AVE YNLLS +F ++PTLF + T PQLSSCF Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+ A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFM Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV N W+L P + LH+++G EFE YE YE+ E + R + A +LW ++ Sbjct: 351 KRVEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG+P++ FKD CN +S QQ+VG + SNLCTEI SS +E AVCNL SI L Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMF 465 Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +D+ KL + + L+ +IDIN + + +A+KSN HR +G+G+ GF AL L Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALIL 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + PY S EA + + E I + A+ AS ELAQ G Y +++GS +G+ D + Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKV 585 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+ Sbjct: 586 P----------TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T + Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVW 695 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755 Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953 + + T+ G + N P + + S + C C Sbjct: 756 ANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810 >gi|320593756|gb|EFX06165.1| ribonucleotide reductase large subunit [Grosmannia clavigera kw1407] Length = 913 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 279/803 (34%), Positives = 427/803 (53%), Gaps = 33/803 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL + + + +Y G++ + L+ Sbjct: 1 MFVRKRDGRQERVQFDKITARVSRLCYGLDTEHIDPVAITQKVISGVYGGVTTAQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K + LY R Sbjct: 61 AETAAYMTVTHPDYAVLAARIAVSNLHKQT--------KKQWSAVITDLYNYVNPRNNTL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 113 SPMISKETYDCVMRHKEDFDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E+ VE YN +S+ F ++PTLFN+GT Q+SSCFL + DD + Sbjct: 173 RVAVGIWGDNVERV---VETYNYMSNKFFTHASPTLFNAGTPQAQMSSCFLVDMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIAGTNGTSNGIVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA C YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFCIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E + D YG+EFE YE YER E + + + A LW +L ETG+P+ Sbjct: 350 LMCPNECPGMADCYGEEFEALYEKYER-----EGRGRKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L + N +D+ Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPSFVDYTNETYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L++VID+N + + +AK SN HR IGLG+ G A L +P+ SPE Sbjct: 465 KKLHEVAQLVVRNLNHVIDVNYYPVPEAKNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A E+ + E I A++AS ELA+ G YS+++GS QG+ D + Sbjct: 525 ARELNKQIFETIYHAALTASCELAKIEGTYSTYEGSPVSQGILQPDMW----------DV 574 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + WD L+ ++K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 575 KPSDLWDWDSLRLKIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W +GLKT YYLR+++A + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGI 940 + Sbjct: 755 QQALLVADTNSGRERGLRKRAPP 777 >gi|289621907|emb|CBI61238.1| putative heterokaryon incompatibility protein [Sordaria macrospora] Length = 937 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 279/805 (34%), Positives = 429/805 (53%), Gaps = 33/805 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ + L+ Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------INELYNYVNPKTGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMIAKDTYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S F ++PTLFN+GT QLSSCFL + D + Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKR+ QN WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRIEQNGTWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D+YG EFE YE YE+ E K + + A LW +L ETG+P+ Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L A + N +D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALAAFVDYENASYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID+N + + +A SN HR IG+G+ G A L +P+ SPE Sbjct: 465 KKLHEVTQVVVRNLNKIIDVNHYPVMEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS +LA+E+G YS+++GS QG+ D + Sbjct: 525 ARKLNIQIFETIYHAALTASCQLAKEQGTYSTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 ++ W LK +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --SNLWDWAALKADIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L + LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLRDLVEMGLWSDNMKNRIIAEGGSIQNIASIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942 K V +S P+ Sbjct: 755 QEALKATDDQVAPAHSGLKKRAPPA 779 >gi|119501198|ref|XP_001267356.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya fischeri NRRL 181] gi|119415521|gb|EAW25459.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya fischeri NRRL 181] Length = 859 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 281/808 (34%), Positives = 431/808 (53%), Gaps = 33/808 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNKQP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L ING E PQ M Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVAVGIHGN---NIEKAIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EF+ YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFDALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +ID+N + + +AKKSN HR I LG+ G A L +P+ S E Sbjct: 465 GKLHEVVQVLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS ELA+E G Y +++GS QG+ D Sbjct: 525 ARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKTKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ KL ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 K+ V N++ S T Sbjct: 755 QEQLKVADTNVARANAAYKKRAAGSVST 782 >gi|301166950|emb|CBW26529.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha [Bacteriovorax marinus SJ] Length = 785 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 287/816 (35%), Positives = 445/816 (54%), Gaps = 40/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ G ++ +E L + ++ S+ + ++DG+S +L+ Sbjct: 1 MYVITRSGEREPIKFDKITERIESLAFDLDKEFIDPSLITSKVIEGIFDGISTPELDKLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L + P+Y+K+ R + L +E + ++ +Y E Sbjct: 61 GETAAYLSTQHPDYSKLAGRIAVSNLHKETRGCFSEN--------IKEMYNYVNPATGEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + +RDF ++Y G + L Y L ++G E P M Sbjct: 113 APLISKELYEVVMENAEMLDTAVDDKRDFNYDYFGFKTLERSYLLKMDGKITERPGQMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + K A+E YNL+S +F ++PTLFNSGT PQLSSCFL T+ DD + Sbjct: 173 RVSVGIHMND---MKAAIETYNLMSEKYFTHASPTLFNSGTSKPQLSSCFLLTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+++A++++ +GG+G +R G+ I GTNG S G++P LKV NDTA V+QG Sbjct: 230 GIYDTLKQSALISQSAGGIGLSIHNIRAKGSFIKGTNGTSNGIVPMLKVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ +FL+++KNTG D R D+ A WI DLFMKRV + W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFDFLEMKKNTGKDENRARDLFYALWISDLFMKRVEADGMWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E + + YG EFE Y YE E K + + A LW +L ETG P+ Sbjct: 350 LFCPHECPGMAETYGAEFEALYTKYE-----SEGKAKKVVRAQDLWFAVLESQIETGSPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDY 618 + +KD N +S Q+++G + SSNLCTEI ++ +E AVCNL SI N+ A +D+ Sbjct: 405 MLYKDSINEKSNQKNLGTIKSSNLCTEIMEYTAPDEVAVCNLASIALNMFVDEATKTYDH 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + A L+ +IDIN + + +AK SN HR IGLG+ G + + SPE Sbjct: 465 KKLYDVVYRATLNLNRIIDINYYPVPEAKNSNMRHRPIGLGVQGLADTFFKMRYDFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A+E+ ++ E I F A+SAS +LA + GAY +++GS QG F D G+ + Sbjct: 525 ALELNNQIFETIYFAALSASKDLAMKDGAYETYEGSPMSQGQFQFDMWGVTPSAK----- 579 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W L+K V G+RNS +A PTA+ + I G ++ +P N+YV+ +SG+ Sbjct: 580 ----NWDWSALRKEVAEHGVRNSLLVAPMPTASTSQILGNNECFEPITSNIYVRRVLSGE 635 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN FLVN+L + LWD+ M +++ ++GSI IERIP++LK ++ T +EI +I Sbjct: 636 FAVVNKFLVNDLIRAGLWDDKMRNEIIANNGSIQAIERIPEELKGLYKTVWEISQKTVIN 695 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 ++ R +IDQ QSLN+++ EP+ KL ++ AW GLKT YYLR+R+A + + T+K Sbjct: 696 MSAGRAPYIDQGQSLNIHMQEPNFGKLSSMHFYAWKAGLKTGMYYLRARAAVNAVQFTVK 755 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K+N + S + +C +C Sbjct: 756 NDTPKVNKEDAQA--------AMVCSIENPDDCVMC 783 >gi|221125333|ref|XP_002156212.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain isoform 2 [Hydra magnipapillata] Length = 809 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 283/829 (34%), Positives = 436/829 (52%), Gaps = 39/829 (4%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDG 192 D + + ++ G + ++ +++ C GL +S + + + MY G Sbjct: 8 QNEDFELDANMFVIKRGGRQEECHFDKITSRIKKLCFGLDMKYISPYAITWKVIRGMYPG 67 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+T + ++ K P+YA + AR + L +E + LY Sbjct: 68 ITTVELDTLAAEVAASMTTKHPDYALLAARIAISNLHKETKKKFSDT--------IADLY 119 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 ++ + L + RDF + Y G + L Y L ING Sbjct: 120 NYISPEINMNCPMVSEEVYQIVQKNKERLDGAIISSRDFEYHYFGFKTLERSYLLKINGK 179 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRV++G+ E A+E YNL+S F ++PTLFNSGT PQ+SSCF Sbjct: 180 TAERPQHMLMRVSVGIHG---EDLDAAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCF 236 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L + D + GIF +++ A+++K++GG+G +R G++I GTNG S G+IP L+V Sbjct: 237 LLAMQSDSIEGIFDTVKQCAIISKWAGGIGLHIHCIRSSGSYIAGTNGHSNGIIPMLRVF 296 Query: 432 NDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TA V+QG KR G++ YLE WH D+ +FLDL+KNTG + +R D+ W+PDLFM Sbjct: 297 NNTARYVDQGGNKRPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFGLWVPDLFM 356 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV + W+L P E L D YG+EFE Y+ YE E + ++I A LW +L Sbjct: 357 RRVEEKGMWSLMCPHECPGLADCYGEEFEELYQKYE-----SEGRYRKQIPAQKLWFAIL 411 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL--- 607 ETG P++ +KD CN +S Q+++G + SNLCTEI +SS+E AVCNL SI++ Sbjct: 412 ESQTETGTPYMLYKDSCNRKSNQKNLGTLKCSNLCTEILEYTSSDEIAVCNLASISVNSF 471 Query: 608 --LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 + +D+ KL + R L+ VID N + + +A+ SN HR IG+G+ G Sbjct: 472 VTVNSETTGVYDFKKLKYVTKVITRNLNKVIDRNFYPVPEARNSNMRHRPIGIGVQGLAD 531 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 A L+ P+ S EA + + E I + A+ AS ELA++ G Y S++GS +G+ D Sbjct: 532 AFILMRFPFESDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQGSPISKGILQYDM 591 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + T+ W ELK ++ G+RNS +A PTA+ A I G ++SI+P Sbjct: 592 WNVTP----------TNLWNWAELKAKIALHGVRNSLLVAPMPTASTAQILGNNESIEPY 641 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N+Y + +SG+F VVN L+ +L +LWD+ M + L H+GS+ NI+ IP D+K ++ Sbjct: 642 TNNIYSRRVLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEIPADIKVLY 701 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLR 904 TA+EI LI A+ R +IDQ+QS N++L EPS L I+ W GLKT YYLR Sbjct: 702 KTAWEIKQKSLINMAADRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGLKTGMYYLR 761 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++ A + + T+ K + + + S + +C C Sbjct: 762 TKPAANAIQFTVDQNKLKQSNNLKQTDD---DLKSLICSLENKDQCMSC 807 >gi|240280028|gb|EER43532.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces capsulatus H143] gi|325088748|gb|EGC42058.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces capsulatus H88] Length = 881 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 277/802 (34%), Positives = 428/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYATLAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHGDDVERV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N+ WT Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNSEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + + A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L + +D+ Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I ++AS ELA+ G YS+++GS QG+ D + Sbjct: 525 AKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 K+ V N + G Sbjct: 755 QEQLKVADTNVARVNGALKKRG 776 >gi|116283230|gb|AAH03299.1| Rrm1 protein [Mus musculus] Length = 762 Score = 698 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 289/779 (37%), Positives = 444/779 (56%), Gaps = 32/779 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + +D++ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTPEHTYDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + I +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS ELA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 753 >gi|324506544|gb|ADY42792.1| Ribonucleoside-diphosphate reductase large subunit [Ascaris suum] Length = 790 Score = 698 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 284/823 (34%), Positives = 429/823 (52%), Gaps = 43/823 (5%) Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLS 194 P ++ DG + ++ +E+ C GL V V + ++ G+S Sbjct: 3 QPMKRLPSTYVVKRDGRREGVHFDKIAHRIEKLCYGLNPDYVDYIEVSQKVIAGLFKGVS 62 Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 L+ ++ + K P+YA + AR + L ++ +K LY Sbjct: 63 TVQLDNLAAETAADMTTKHPDYAILAARIAISNLHKQT--------KKMFSEVATVLYNA 114 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 + + ++ + L + + ++RDF+F Y G + L Y L +NG + Sbjct: 115 HHPKTGVHTPMISKEVFDIIIANADRLNSAIVHDRDFSFTYFGFKTLERSYLLKMNGEPV 174 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FMRVA+G+ E A+E YNL+S F +TPTLFNSGTR PQ+SSCFL Sbjct: 175 ERPQHLFMRVAVGIH---KEDIDAAIETYNLMSERWFTHATPTLFNSGTRLPQMSSCFLL 231 Query: 375 TVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GIF L++ A+++K +GG+G + +R G+ I GT+G S G++P L+V N+ Sbjct: 232 TMQEDSIEGIFDTLKKCALISKSAGGIGLNVHCIRATGSSIAGTSGVSNGLVPMLRVFNN 291 Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QG KR GA YLE WH D+ E+LDLRKN GD+ R D+ W+PDLFM+R Sbjct: 292 TARYVDQGGNKRPGAFAIYLEPWHADIFEYLDLRKNVGDELERCRDLFFGLWVPDLFMQR 351 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+L P E L D +G EFE Y YE E + ++I A LW ++T Sbjct: 352 VRDNGKWSLMCPAECRGLEDCWGDEFEKLYSKYEA-----EGRYRKQIEARRLWEAIITA 406 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-F 611 ETG P++ +KD CN +S QQ+VG + SNLCTEI SS E AVCNL SI L Sbjct: 407 QIETGVPYMVYKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPTEVAVCNLASIALNRFVT 466 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 FD+ KL + R L+ +ID N + + +AK SN HR IG+G+ G A L+ Sbjct: 467 TEKTFDFKKLHEVTKVVTRNLNKIIDGNYYPVPEAKVSNMRHRPIGIGVQGLADAFMLMR 526 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 P+ S A E+ E I A+ AS ELA++ G Y S++GS +G+ D G+ Sbjct: 527 YPFTSAPARELNKRIFETIYHAALEASCELAKKYGPYESYEGSPISKGILQQDMWGVEP- 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 T + WD L+ + G+RNS +A PTA+ A I G ++SI+P N+Y Sbjct: 586 ---------TDQCDWDTLRAEIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNVYT 636 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 ++ +SG+F + N L+ +L LWD+ M ++ H GS+ IERIP +++ ++ T +E+ Sbjct: 637 RNVLSGNFQIFNPHLLKDLVDLGLWDDEMKLEIIAHKGSVQAIERIPLEIRNLYKTVWEL 696 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 +I+ A+ R +IDQ+QSLN+++ +PS ++ W GLKT YYLR+R A Sbjct: 697 SQKDIIDMAADRGAFIDQSQSLNIFIAKPSYANCTSMHFYGWSKGLKTGMYYLRTRPAVD 756 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + T+ K ++ + + + C +C Sbjct: 757 AVQFTVDKTRLK-----------EVNAKMLECALSDPEGCVMC 788 >gi|50426387|ref|XP_461790.1| DEHA2G05610p [Debaryomyces hansenii CBS767] gi|49657460|emb|CAG90249.1| DEHA2G05610p [Debaryomyces hansenii] Length = 867 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 267/814 (32%), Positives = 430/814 (52%), Gaps = 35/814 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLDTTHVEPVAITQRVISGVYQGVNTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + ++ LY + Sbjct: 61 AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQFSQVSKE--------LYEYVNPKTDLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + ++RDF + Y G + L Y L ING E PQ M Sbjct: 113 SPMISKDTYDIIQANANELNSAIVFDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + E+ +E YN++S +F +PTLFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAVGIHGNDIERV---IESYNMMSLRYFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D+YG EFE Y YE+ E + + A LW +L ETG P+ Sbjct: 350 LFSPNEAKGLSDVYGDEFEELYTKYEK-----ENRGRSVVKAQKLWYAILDAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFANNQF 616 + +KD CN ++ Q+++G++ SSNLC EI S+ +E AVCNL SI L + + + Sbjct: 405 MLYKDACNKKTNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPAFVDKNNTTSWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D++KL + R L+ +ID N + + +A+ SN +R I LG+ G A L +P+ S Sbjct: 465 DFEKLHEVTKVVTRNLNRIIDRNYYPVPEARNSNMRNRPIALGVQGLADAFMALRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ AS+ELA+ G Y +++GS +G+ D Sbjct: 525 QEAKELNTQIFETIYHGAVEASIELAEIEGPYQTYEGSPASKGILQFDLWERKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQKLAKHGIRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L +W++ M +++ ++GSI + IPD+LK ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVDLGIWNDDMKNNIISNNGSIQTLPNIPDELKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 + + + I S +S + Sbjct: 755 VDQNSVNNASKTIASLEKLNQRKYIAKSVSSTND 788 >gi|255724148|ref|XP_002547003.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] gi|240134894|gb|EER34448.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] Length = 865 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 275/794 (34%), Positives = 428/794 (53%), Gaps = 35/794 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVFKRDGRKEPVRFDKITARVQRLCYGLDPNHVEPVAITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T+ P+YA + AR + L ++ K Q LY + Sbjct: 61 AEIAATMTTVHPDYAVLAARIAVSNLHKQTTKQYSKVS--------QALYEYVNPKTGLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + + Y L ING E PQ M Sbjct: 113 SPMISKETYDIIMEHEDELNSAIVYDRDFNYNYFGFKTMERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ K+ + +E YNL+S +F +P LFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAIGIHGKDIPRV---IETYNLMSQRYFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKSCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D+YG EFE Y YE+ E + + I A LW +L+ ETG P+ Sbjct: 350 LFSPNEAPGLSDVYGDEFEELYTRYEK-----ENRGRQTIKAQKLWYAILSAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN ++ Q+++GV+ SSNLC EI S+ +E AVCNL SI L +N + Sbjct: 405 MLYKDACNTKTNQKNLGVIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEHDESNTWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +++KL + R L+ VID N + + +A++SN HR I LG+ G A L +P+ S Sbjct: 465 NFEKLHEVTKVVTRNLNRVIDRNYYPVPEAERSNMRHRPIALGVQGLADAFMSLRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ +S+ELA E G Y S+ GS QG+ D Sbjct: 525 QEARELNIQIFETIYHAAVESSIELAAEEGVYESYPGSPASQGLLQFDLWNRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L +W++AM S++ ++GSI + IPD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLKDLVDLGIWNDAMKSNIISNNGSIQGLPNIPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A++ + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754 Query: 916 LKGVDGKLNAVPVT 929 + + + V Sbjct: 755 IDKLVAESAGQTVA 768 >gi|150024560|ref|YP_001295386.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium psychrophilum JIP02/86] gi|149771101|emb|CAL42568.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium psychrophilum JIP02/86] Length = 806 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 294/828 (35%), Positives = 457/828 (55%), Gaps = 43/828 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ +++ C GL D V + V + +YDG++ S+L+ Sbjct: 1 MYVIKRDGHKEPVMFDKITERIKKLCYGLNDLVDAVKVAMRVIEGLYDGVATSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ ++ P+YA++ AR + L K+ M +Y R +E Sbjct: 61 ETAASMTIAHPDYAQLAARIAISNLHSNT--------NKSFSETMNEMYHYVNPRNGQEA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 +++ + +L + + Y RDF ++Y G + L Y L ING +E PQ MR Sbjct: 113 PLLSEEVHTVIQENAAFLNSHIIYTRDFNYDYFGFKTLERSYLLKINGKIVERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + K +E Y+L+S F +TPTLFN+GT PQ+SSCFL + DD + G Sbjct: 173 VSVGIHLND---LKSVIETYDLMSKKFFTHATPTLFNAGTPKPQMSSCFLLAMQDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G VR G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+ETWH D+ EFLDL+KNTG + R D+ A W DLFMKRV +N WTL Sbjct: 290 GKRKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGDWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L+D+YG+EFE Y NYE+ K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPGLYDVYGEEFEKMYTNYEKA-----GKGRKTIKAHELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL S++L N F++D L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSKDEIAVCNLASLSLPMFIENGTFNHDLL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + R L+ VID N + +++ + SN HR IGLG+ G A +L +P+ S +A + Sbjct: 465 FTVTKRVTRNLNKVIDRNYYPVKEGENSNKRHRPIGLGVQGLADAFIMLRLPFTSDQAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS+E+A E G YS+F GS QG F + GL E + Sbjct: 525 LNQEIFETLYFAAVTASMEMAIEEGPYSTFAGSPISQGEFQYNLWGLKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W L+K V G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWDWANLRKEVMKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+N+L +R LW E + L +GS+ + IP DLK+++ T +E+ +I+ + Sbjct: 638 VNKHLLNDLVERGLWTEDLKQQLMRENGSVQKL-NIPQDLKELYKTVWEMSMKDIIDMSR 696 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R ++DQ+QSLNL++ + + KL ++ AW GLKT YYLR+++A K TL Sbjct: 697 QRGYFVDQSQSLNLFMQDANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNDK 756 Query: 921 G-KLNAVPVTDPNSSTHSLGIPSSCTSD--------------TECEVC 953 + + V + T + T++ +CE+C Sbjct: 757 KAEPITIEVKQQTTLTEVEPQTKTMTNEEYSAMIQLAKNATPEDCEMC 804 >gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia] gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia] Length = 812 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 296/835 (35%), Positives = 444/835 (53%), Gaps = 42/835 (5%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192 K+ + KL ++ DG + ++ +++ C L V + + +Y G Sbjct: 2 LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+ + L P+YA + AR + L +E +KA + LY Sbjct: 62 VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLY 113 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 ++ H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 114 NHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRVA+G+ E AVE YNLLS +F ++PTLF + T PQLSSCF Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+ A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFM Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV N W+L P + LH+++G EFE YE YE+ E + R + A +LW ++ Sbjct: 351 KRVEANGDWSLMCPHKCPGLHEVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG+P++ FKD CN +S QQ+VG + SNLCTEI SS +E AVCNL SI L Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMF 465 Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +D+ KL + + L+ +IDIN + + +A+KSN HR +G+G+ GF AL L Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALIL 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + PY S EA + + E I + A+ AS ELAQ GAY +++GS +G+ D + Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGAYETYEGSPVSKGILQYDMWDKV 585 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+ Sbjct: 586 P----------TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T + Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVW 695 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755 Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953 + + T+ G + N P + + S + C C Sbjct: 756 ANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810 >gi|15227096|ref|NP_179770.1| RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding / ribonucleoside-diphosphate reductase [Arabidopsis thaliana] gi|56749666|sp|Q9SJ20|RIR1_ARATH RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase R1 subunit; Short=AtRNR1 gi|4417273|gb|AAD20398.1| putative ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] gi|14334814|gb|AAK59585.1| putative ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] gi|30793895|gb|AAP40400.1| putative ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] gi|330252128|gb|AEC07222.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis thaliana] Length = 816 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 295/840 (35%), Positives = 446/840 (53%), Gaps = 57/840 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + Y ++ Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMF-------YHVNDRSGLKS 113 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + A + E +M + L +++ Y+RDF ++Y G + L Y L + G+ +E PQ M Sbjct: 114 PLIADDVFEIIMQ-NAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + ++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV EFL+LRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EFE Y YER E K + + A LW ++LT ETG P+ Sbjct: 350 LFCPNEAPGLADCWGAEFETLYTKYER-----EGKAKKVVQAQQLWYEILTSQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDS 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD++KLA T L+ +ID+N + +E AK SN HR IG+G+ Sbjct: 465 HPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A LL +P+ SPEA ++ + E I +HA+ AS ELA G Y ++ GS +G+ Sbjct: 525 QGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W L+ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVIPSDR----------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L LW + + L +GSI N+ IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI +++ A+ R +IDQ+QSLN+++D+P+ KL ++ W GLKT Sbjct: 695 LKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ K V + ++ T + S T+ EC C Sbjct: 755 MYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814 >gi|303316562|ref|XP_003068283.1| Ribonucleoside-diphosphate reductase large chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|240107964|gb|EER26138.1| Ribonucleoside-diphosphate reductase large chain, putative [Coccidioides posadasii C735 delta SOWgp] Length = 877 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 277/802 (34%), Positives = 430/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYINPKNNRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQKTYEIVMKHSAELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ EK A+E YNL+S F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHGEDIEK---AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI +S +E AVCNL S+ L + + +D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + + +A+KSN HR I +G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS ++A+ G Y +++GS QGV D + Sbjct: 525 ARQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPVSQGVLQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI +I IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQSIPNIPADIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 K+ V + G Sbjct: 755 QEQLKVADTNVARSSVVGKKRG 776 >gi|225560468|gb|EEH08749.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces capsulatus G186AR] Length = 881 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 278/802 (34%), Positives = 428/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYATLAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHGDDVERV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV QN+ WT Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEQNSEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + + A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L + +D+ Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I ++AS ELA+ G YS+++GS QG+ D + Sbjct: 525 AKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 K+ V N + G Sbjct: 755 QEQLKVADTNVARVNGALKKRG 776 >gi|226293011|gb|EEH48431.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb18] Length = 881 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 279/803 (34%), Positives = 430/803 (53%), Gaps = 33/803 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNGRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAIGIHGDDVERV---IETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I ++AS ELA+ G YSS++GS QG+ D G+ Sbjct: 525 AKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGI 940 K+ V N + Sbjct: 755 QEQLKVADTNVARVNGAMKKRAA 777 >gi|221125331|ref|XP_002156185.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain isoform 1 [Hydra magnipapillata] Length = 821 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 283/841 (33%), Positives = 435/841 (51%), Gaps = 51/841 (6%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDG 192 D + + ++ G + ++ +++ C GL +S + + + MY G Sbjct: 8 QNEDFELDANMFVIKRGGRQEECHFDKITSRIKKLCFGLDMKYISPYAITWKVIRGMYPG 67 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+T + ++ K P+YA + AR + L +E + LY Sbjct: 68 ITTVELDTLAAEVAASMTTKHPDYALLAARIAISNLHKETKKKFSDT--------IADLY 119 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 ++ + L + RDF + Y G + L Y L ING Sbjct: 120 NYISPEINMNCPMVSEEVYQIVQKNKERLDGAIISSRDFEYHYFGFKTLERSYLLKINGK 179 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRV++G+ E A+E YNL+S F ++PTLFNSGT PQ+SSCF Sbjct: 180 TAERPQHMLMRVSVGIHG---EDLDAAIETYNLMSEKWFTHASPTLFNSGTPRPQMSSCF 236 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L + D + GIF +++ A+++K++GG+G +R G++I GTNG S G+IP L+V Sbjct: 237 LLAMQSDSIEGIFDTVKQCAIISKWAGGIGLHIHCIRSSGSYIAGTNGHSNGIIPMLRVF 296 Query: 432 NDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TA V+QG KR G++ YLE WH D+ +FLDL+KNTG + +R D+ W+PDLFM Sbjct: 297 NNTARYVDQGGNKRPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFGLWVPDLFM 356 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV + W+L P E L D YG+EFE Y+ YE E + ++I A LW +L Sbjct: 357 RRVEEKGMWSLMCPHECPGLADCYGEEFEELYQKYE-----SEGRYRKQIPAQKLWFAIL 411 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL-- 608 ETG P++ +KD CN +S Q+++G + SNLCTEI +SS+E AVCNL SI++ Sbjct: 412 ESQTETGTPYMLYKDSCNRKSNQKNLGTLKCSNLCTEILEYTSSDEIAVCNLASISVNSF 471 Query: 609 ---------------AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 +D+ KL + R L+ VID N + + +A+ SN H Sbjct: 472 VTVNSETVTLPSGETKLVKTGVYDFKKLKYVTKVITRNLNKVIDRNFYPVPEARNSNMRH 531 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G+ G A L+ P+ S EA + + E I + A+ AS ELA++ G Y S++G Sbjct: 532 RPIGIGVQGLADAFILMRFPFESDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQG 591 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S +G+ D + T+ W ELK ++ G+RNS +A PTA+ A Sbjct: 592 SPISKGILQYDMWNVTP----------TNLWNWAELKAKIALHGVRNSLLVAPMPTASTA 641 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G ++SI+P N+Y + +SG+F VVN L+ +L +LWD+ M + L H+GS+ N Sbjct: 642 QILGNNESIEPYTNNIYSRRVLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQN 701 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I+ IP D+K ++ TA+EI LI A+ R +IDQ+QS N++L EPS L I+ W Sbjct: 702 IDEIPADIKVLYKTAWEIKQKSLINMAADRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGW 761 Query: 894 LMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952 GLKT YYLR++ A + + T+ K + + + S + +C Sbjct: 762 KKGLKTGMYYLRTKPAANAIQFTVDQNKLKQSNNLKQTDD---DLKSLICSLENKDQCMS 818 Query: 953 C 953 C Sbjct: 819 C 819 >gi|330889422|gb|EGH22083.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. mori str. 301020] Length = 706 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 406/700 (58%), Positives = 508/700 (72%), Gaps = 6/700 (0%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQTPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRAPEDQVQ-AHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L A Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSA 244 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYD Sbjct: 245 THHEMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYD 304 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 305 RYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGT 364 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 365 LRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 424 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+PFLKV NDTAVAVNQGGKRKGAVCAYLETWH+D+EEF++LRKNTGDDRRRTHDMNTAN Sbjct: 425 VVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTAN 484 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-ADRGEIKVFRKISA 542 WIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE G+IK+F+ I A Sbjct: 485 WIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQA 544 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN++ +E AVCNL Sbjct: 545 KDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNL 604 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GSINL H N + D DKL T+ AVR+LDNVIDIN +++ +AK SN HR +GLG+MG Sbjct: 605 GSINLPNHIVNGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMG 664 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 FQ AL+L HIPY S AV+ AD SME +S++AI AS +LA Sbjct: 665 FQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLA 704 >gi|332519181|ref|ZP_08395648.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix algicola 5H-3-7-4] gi|332045029|gb|EGI81222.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix algicola 5H-3-7-4] Length = 827 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 277/804 (34%), Positives = 440/804 (54%), Gaps = 27/804 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V + C GL + V V +YDG++ S+L+ Sbjct: 1 MFVLKRDGRKEPIMFDKITARVRKLCYGLNELVDPIKVAMRVIDGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + T+ P+YA++ AR + L + T M LY R ++ Sbjct: 61 EQAATMTTAHPDYARLAARISVSNLHKNTKKTFSDV--------MTDLYQYVNPRTGKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 +++ + L + + Y RDF ++Y G + L Y L ING E PQ MR Sbjct: 113 PLLSDEVYNVIMENKEKLDSAIIYNRDFGYDYFGFKTLERSYLLKINGEIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ + + A+E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + G Sbjct: 173 VSIGIHIND---LDAALETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIDG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G +R G++I GTNG S G++P LKV NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLKVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ FLDL+KN G + R D+ A W+PDLFMKRV ++A WTL Sbjct: 290 GKRKGSFAMYIEPWHADIFNFLDLKKNHGAEELRARDLFYAMWMPDLFMKRVQEDAQWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L D++ +EFE Y YE E K + I A LW K+L ETG P++ Sbjct: 350 MCPNECPGLCDVHSEEFEALYTKYEA-----EGKGRKSIKARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N +FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEIMEYTSEDEVAVCNLASIALPMFVKNGEFDHKEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + L+ VID N + +++A+ SN HR +GLG+ G A L +P+ S A + Sbjct: 465 FRITKRVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGVQGLADAFIKLRMPFTSDAAKQ 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E + + A++AS+E AQ G Y +++GS +G F + + + + Sbjct: 525 LNQDIFETLYYAAVTASMEEAQVDGPYQTYEGSPMSKGEFQHNLWNIQEDTL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W++L+K+V G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F V Sbjct: 578 GRWDWEKLRKQVAKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LW+E + +++ +GSI ++E IP D+K ++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVDLGLWNEDLKNEIMRANGSIQHVENIPQDIKDLYKTVWELSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR++SA +K T+ Sbjct: 698 QRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAKKVTISRAT 757 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSC 944 ++ + ++ Sbjct: 758 KAAPVTKEVAVDNDGVAQKQQTAA 781 >gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba] gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba] Length = 812 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 294/835 (35%), Positives = 440/835 (52%), Gaps = 42/835 (5%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192 K+ + KL ++ DG + ++ +++ C L V + + +Y G Sbjct: 2 LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+ + L P+YA + AR + L +E +K + LY Sbjct: 62 VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKVFSDVFEDLY 113 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 ++ H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 114 EHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRVA+G+ E AVE YNLLS +F ++PTLF + T PQLSSCF Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+ A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFM Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV N W+L P + L D++G EFE YE YE+ E + R + A +LW ++ Sbjct: 351 KRVEANGDWSLMCPHKCPGLQDVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG+P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMF 465 Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +D+ KL + + L+ +IDIN + + +AKKSN HR +G+G+ GF AL L Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPVGIGVQGFADALIL 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + PY S EA + + E I + A+ AS ELAQ G Y +++GS +G+ D + Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQAEGPYETYEGSPVSKGILQYDMWDKV 585 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+ Sbjct: 586 P----------TNLWDWQKLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T + Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVW 695 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755 Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDPNSSTHS-----LGIPSSCTSDTECEVC 953 + + T+ G + N P + S + C C Sbjct: 756 ANAIQFTVNKKQGAVSINGQNGASEGSPQKFEEDRERKMADMVCSLENKDACMSC 810 >gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate reductase large subunit [Arabidopsis thaliana] Length = 816 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 296/840 (35%), Positives = 447/840 (53%), Gaps = 57/840 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPILVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + Y ++ Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMF-------YHVNDRSGLKS 113 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + A + E +M + L +++ Y+RDF ++Y G + L Y L + G+ +E PQ M Sbjct: 114 PLIADDVFEIIMQ-NAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + ++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+G L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYGTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV EFL+LRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EFE Y YER E K + + A LW ++LT ETG P+ Sbjct: 350 LFCPNEAPGLADCWGAEFETLYTKYER-----EGKAKKVVQAQQLWYEILTSQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDS 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD++KLA T L+ +ID+N + +E AK SN HR IG+G+ Sbjct: 465 HPPKLAGSLDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A LL +P+ SPEA ++ + E I +HA+ AS ELA G Y ++ GS +G+ Sbjct: 525 QGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W L+ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVIPSDR----------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L LW + + L +GSI N+ IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI +++ A+ R +IDQ+QSLN+++D+P+ KL ++ W GLKT Sbjct: 695 LKAIYRTVWEIKQRTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ K V + ++ T + S T+ EC C Sbjct: 755 MYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLAC 814 >gi|195403619|ref|XP_002060363.1| GJ14594 [Drosophila virilis] gi|194140867|gb|EDW57333.1| GJ14594 [Drosophila virilis] Length = 818 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 292/833 (35%), Positives = 435/833 (52%), Gaps = 48/833 (5%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200 KL ++ DG + ++ V++ C L V + + +Y G++ +L+ Sbjct: 10 EKLYVIKRDGRKEEIHFDKITSRVQKLCYNLNMDFVDPVSITLKVINGLYCGVTTQELDN 69 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + +L +YA + AR + L +E +K + LY Sbjct: 70 LAAEIAASLTTHHADYALLAARIAVSNLHKET--------RKVFSDVFEDLYKHVNRETN 121 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 E H +++ + L + + Y+RDF + Y G + L Y L ING E PQ Sbjct: 122 ETSPMVSEYHYNIVANNSDRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGKIAERPQHM 181 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379 MRVA+G+ + A+E YNLLS +F ++PTLF + T PQLSSCFL T+ D Sbjct: 182 LMRVAIGIHGDD---IDSAIETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMASDS 238 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GIF +++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ A V+ Sbjct: 239 IEGIFKTVEQCAMISKSAGGIGLNVHCIRAKGTSISGTNGTSNGLVPMLRVFNNVARYVD 298 Query: 440 QGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG KR GA YLE WH DV EFLDL+KNTG + R D+ A WIPDLFMKRV N Sbjct: 299 QGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEANED 358 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+L P + L D++G+EFE Y YE+ E + R + A +LW ++ ETG Sbjct: 359 WSLMCPHKCPGLQDVWGEEFEKLYVKYEK-----EGRQNRIVKAQSLWFAIIESQVETGT 413 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFD 617 P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L +D Sbjct: 414 PYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTAEKSYD 473 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + KL + + L+ +IDIN + + +AKKSN HR IG+G+ GF AL L+ PY S Sbjct: 474 FKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGFADALILMRFPYESE 533 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA + + E I + A+ AS EL+++ G Y ++ GS +GV D Sbjct: 534 EASLLNQQIFETIYYGALEASCELSKKDGPYETYIGSPVSKGVLQYDMWNRSP------- 586 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T WD LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 587 ---TDLWDWDHLKRSIKQHGVRNSLLIAPMPTASTAQIMGNNESFEPYTSNIYTRRVLSG 643 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+ +L + DLWD+ M + + GSI NIE IP++++ ++ T +EI I Sbjct: 644 EFQVVNPHLLRDLTELDLWDDEMKNQIIASRGSIQNIESIPEEIRDLYKTVWEISVKSTI 703 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + + T+ Sbjct: 704 KMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTV 763 Query: 917 KGV----------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++ +D + S + C C Sbjct: 764 DKNVSVVEINAQNFVDQHASMEMGDTNESDIERERRMAQMICSLENKDACLSC 816 >gi|187608195|ref|NP_001120566.1| ribonucleotide reductase M1 [Xenopus (Silurana) tropicalis] gi|171847253|gb|AAI61529.1| LOC100145720 protein [Xenopus (Silurana) tropicalis] Length = 797 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 282/821 (34%), Positives = 443/821 (53%), Gaps = 38/821 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL + V + + + +Y+G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYNGVTTIELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKIFSDVMEDLYNYVNPLNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ + G + L Y L I+G E PQ M Sbjct: 113 SPMVSKETLDLVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKIDGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KTDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHYDVFEFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L +++G +F + E + + + A LW ++ ETG P+ Sbjct: 350 LMCPHECPGLEEVWGDKF-----EELYERYEREGRARKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + FD+ Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDDEVAVCNLASLALNMYVTPERSFDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +I+IN + + +A+ SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLADVTKVIVRNLNKIIEINFYPVPEAEYSNKRHRPIGIGVQGLADAFILMRYPFESEEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ +S ELA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYAALESSCELAKELGPYDTYEGSPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TGLWDWAALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + ++GSI N+ IP DLK+++ T +EI +I Sbjct: 635 QIVNPHLMKDLTERGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AADRGAFIDQSQSLNIHVAEPNYGKLTSMHFFGWKQGLKTGMYYLRTRPAANPIQFTLNK 754 Query: 919 VDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + + + S + EC +C Sbjct: 755 EKLKEKELISKETMEKDKEEKEKNKAAMVCSLENRDECLMC 795 >gi|261197195|ref|XP_002625000.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces dermatitidis SLH14081] gi|239595630|gb|EEQ78211.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces dermatitidis SLH14081] gi|239606620|gb|EEQ83607.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces dermatitidis ER-3] Length = 886 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 278/802 (34%), Positives = 429/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQGTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + EK +E YNL+S F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHGDDVEKV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG+EF+ YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGEEFDALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L + +D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I +++AS ELA+ G YS+++GS QG+ D + Sbjct: 525 AKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 K+ V N + G Sbjct: 755 QEQLKVADTNVARVNGAMKKRG 776 >gi|325953831|ref|YP_004237491.1| ribonucleoside-diphosphate reductase, subunit alpha [Weeksella virosa DSM 16922] gi|323436449|gb|ADX66913.1| ribonucleoside-diphosphate reductase, alpha subunit [Weeksella virosa DSM 16922] Length = 779 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 289/814 (35%), Positives = 448/814 (55%), Gaps = 42/814 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + + ++ + + GL + + + + +YD ++ ++L+ Sbjct: 1 MYVIKRNGKQEAVHFDKITARIHKLVYGLSVDEKDVIEIAKKVIQGIYDNVTTTELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T P++A + AR + L + L + K + LY Sbjct: 61 AETAATYTTVHPDFAVLAARISVSNLHKNTLKSFSKTAKL--------LYDYIDPVTNTR 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + + + Y+RD+ F+Y G + L Y + NG E PQ FM Sbjct: 113 APLLSEETYDIIRNNADEIDSSIIYDRDYNFDYFGFKTLERSYLIRTNGKVTERPQHLFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + K A+E YNL+S F+ +TPTLFNSGT PQ+SSCFL ++ D + Sbjct: 173 RVALGIH---KQDIKAAIETYNLMSEKWFIHATPTLFNSGTPKPQMSSCFLLSMTEDSIV 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L+ A++++ +GG+G VR G++I GT G S G+IP L+V NDTA V+QG Sbjct: 230 GIFDTLKRCALISQSAGGIGLSIHNVRATGSYIKGTGGISNGIIPMLRVYNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA+ YLE WH D+ +FL+LRKN G + R D+ A WIPDLFM+RV +NA W+ Sbjct: 290 GGKRKGAIAVYLEPWHADIFDFLNLRKNHGKEEMRARDLFPALWIPDLFMQRVEENADWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L+D+YG FE Y++YE + +K+ A LW +L ETG P+ Sbjct: 350 LFDPNEAPGLYDVYGSSFEELYQHYEN-----DGIFRKKVKARELWNAILEAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S Q+++GV+ SSNLCTEI +S++E AVCNL S+ L + + N FD+ K Sbjct: 405 MCYKDAANEKSNQKNIGVIRSSNLCTEIMEYTSADEVAVCNLASLALPRYVSENGFDFQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ VID N + + + + SN HR IGLG+ G LL +P+ S +A Sbjct: 465 LYEVTKIVTRNLNKVIDGNYYPVPETENSNFKHRPIGLGVQGLADVFLLLRMPFESEKAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ +S+ELA+E GAY SFKGS +G F D + Sbjct: 525 QLNKDIFETIYYAAMESSMELAKEEGAYESFKGSPLSEGKFQFDLWN----------VQP 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W L+K V G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 575 SDRWDWKGLRKNVMEFGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFV 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L + +LWD M + L +GS+ NIE IP +LK+++ T +EI +I+ A Sbjct: 635 VVNKHLIKDLIELNLWDARMKNKLIAENGSVQNIEEIPANLKELYKTVWEIKQKTIIDMA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLNL++ EP+ KL ++ AW GLKT YYLR+++A K T++ V Sbjct: 695 ADRGAFICQSQSLNLFMAEPNMAKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVEKV 754 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + I S + EC VC Sbjct: 755 QSSED-----------KQVDISCSLDNPDECIVC 777 >gi|242765906|ref|XP_002341068.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces stipitatus ATCC 10500] gi|218724264|gb|EED23681.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces stipitatus ATCC 10500] Length = 873 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 279/809 (34%), Positives = 434/809 (53%), Gaps = 33/809 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MYVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ ++ LY + + Sbjct: 61 AETAAYMTVTHPDYAVLAARIAVSNLHKQTKKQFSAV--------IEDLYHYVNPKNNKA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISPEMYETVMKHADELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ E ++A+E YNL+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVAVGIHG---ENIEKAIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKSAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFM+RV N WT Sbjct: 290 GNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG+EF+ YE YE+ E + R + A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGEEFDALYEKYEK-----EGRGRRTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI + +E AVCNL S+ L + +D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +IDIN + + +AKKSN HR I +G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS+ELA+E G Y +++GS QG+ D Sbjct: 525 AKQLNIQIFETIYHGALTASIELAKEYGTYETYEGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK +++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDALKAQIREHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 K+ V N + + + Sbjct: 755 QEQLKVQDTNVARANGISKKRSPAPAAFN 783 >gi|332876815|ref|ZP_08444572.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685241|gb|EGJ58081.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 777 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 279/814 (34%), Positives = 443/814 (54%), Gaps = 44/814 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + + ++ + + GL + + + + +YD ++ ++L+ Sbjct: 1 MFVIKRNGKKEAVHFDKITARIHKLIYGLSISEKDVIEIAKKVIQGIYDNITTTELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ P+++ + AR + L + L + K Q LY Sbjct: 61 AETAAAQTTIHPDFSVLAARIAVSNLHKNTLKSFSKTAQL--------LYEYTDPITQTH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RD+ F+Y G + L Y + NG E PQ FM Sbjct: 113 APLISEEIYKIIRKNADELDSSVIYDRDYNFDYFGFKTLERSYLIRTNGKVTERPQHLFM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ E + A+E YNL+S F+ +TPTLFN+GT PQ+SSCFL ++ D + Sbjct: 173 RVALGIY---KEDIQAAIETYNLMSEKWFIHATPTLFNAGTPKPQMSSCFLLSMTEDSIA 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L+ A++++ +GG+G +R G++I GT G S G+IP L+V NDTA V+QG Sbjct: 230 GIFDTLKRCALISQSAGGIGVSIHNIRSTGSYIKGTGGISNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA+ Y+E WH+D+ +F+D+RKN G + R D+ A WIPDLFM+RV + W+ Sbjct: 290 GGKRKGAIAVYIEPWHLDIFDFIDIRKNHGKEEMRARDLFPALWIPDLFMQRVEADQMWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L+++YG++F Y YE E K ++I A LW +L ETG P+ Sbjct: 350 LFDPNEAQGLYEVYGEKFNELYTTYEN-----EGKFRKQIKARELWTAILEAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD N +S Q+++G + SSNLCTEI ++++E AVCNL S+ L + ++ FD+ K Sbjct: 405 MCYKDAVNEKSNQKNIGTIRSSNLCTEIMEYTNADEVAVCNLASLALPRYVSSGGFDFQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ +ID N + I + K SN HR IGLG+ G LL +P+ SPEA Sbjct: 465 LYEVTKIVTRNLNKIIDGNYYPIPETKTSNDRHRPIGLGVQGLADVFLLLRLPFESPEAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E I F ++ AS++LA+E+GAYSSF GS +G F D ++ R Sbjct: 525 RLNKDIFETIYFASMEASMDLAKEQGAYSSFAGSPLSEGKFQFDLWQVVPSDR------- 577 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 W++L++ V T G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 578 ---WDWEKLRQEVMTHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFV 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN FL+ +L + LW+ M + L +GS+ NI IP +LK+++ T +EI +I+ A Sbjct: 635 VVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIPTELKELYKTVWEIKQKTIIDMA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLNL++ EP+ KL ++ AW GLKT YYLR+++A K T+ Sbjct: 695 AERGAFICQSQSLNLFMAEPNLAKLTSMHFHAWKSGLKTGMYYLRTKAAVDAIKFTVD-- 752 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + S + EC C Sbjct: 753 -----------TQLLLGQSQVACSLDNPEECLAC 775 >gi|327351615|gb|EGE80472.1| ribonucleoside-diphosphate reductase [Ajellomyces dermatitidis ATCC 18188] Length = 886 Score = 695 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 278/802 (34%), Positives = 429/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQGTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + EK +E YNL+S F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHGDDVEKV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG+EF+ YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGEEFDALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L + +D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I +++AS ELA+ G YS+++GS QG+ D + Sbjct: 525 AKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 K+ V N + G Sbjct: 755 QEQLKVADTNVARVNGAMKKRG 776 >gi|255070623|ref|XP_002507393.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299] gi|226522668|gb|ACO68651.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299] Length = 841 Score = 695 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 295/863 (34%), Positives = 450/863 (52%), Gaps = 78/863 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 + ++ DG + ++ + + GL + +V + +Y G++ S+L+ Sbjct: 2 AMYVVKRDGRQEPVHFDKITARINKLAYGLNQEFCDPVLVAQKVAVGVYKGVTTSELDEL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ ++ K P+YA++ AR + L + L + + M+ +Y R + Sbjct: 62 AAETAASMTSKHPDYAQLAARIAVSNLHKNTLKSFSET--------MKVMYEHVNKRNGK 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ + +++ Y+RDF ++Y G + L Y L ++G +E PQ Sbjct: 114 WSPLLADDVYEIIKENADRFDSEIVYDRDFDYDYFGYKTLERSYLLRVDGKIVERPQHLL 173 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380 MRVA+G+ ++A++ Y++LS ++PTLFNSGT PQLSSCFL + D + Sbjct: 174 MRVAIGIHK----DVEKAIDTYHMLSERWMTHASPTLFNSGTPRPQLSSCFLIAMKEDSI 229 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E A ++K +GG+G +R ++I GTNG S G+IP L+V NDTA V+Q Sbjct: 230 EGIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARYVDQ 289 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KRKGA YLE WH D+ ++LDLRKN G + R D+ W DLFMKRV N W Sbjct: 290 GGGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGEW 349 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLF P+E L D +G+EFE YE YE E K + + A LW +L ETG+P Sbjct: 350 TLFCPNEAPGLADCWGEEFEALYEKYEA-----EGKGKKTVKAQQLWFAILESQVETGNP 404 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-------- 611 ++ FKD CN +S QQ++G + SSNLCTEI +S EETAVCNL SI L Sbjct: 405 YMLFKDACNRKSNQQNLGTIRSSNLCTEIVEYTSPEETAVCNLASIALPRFVIENNPQSP 464 Query: 612 ---------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 AN FD+DKLA R R L+ +ID+N + +E A++SN HR I Sbjct: 465 TGRTEAKKLRGSIGAANRYFDHDKLAEITRKVTRNLNRIIDVNYYPVETARRSNMKHRPI 524 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G LL +P+ SPEA ++ E E I F A++ S ++A+ G Y S+ GS Sbjct: 525 GLGVQGLADVFILLGMPFDSPEAKKLNAEIFETIYFAALTESNDIAKRDGTYESYPGSPV 584 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 GV D GL M R W L+ ++ G+RNS +A PTA+ + I Sbjct: 585 SNGVLQPDMWGLT-------EMPGGDRHDWTGLRTKISEHGVRNSLLVAPMPTASTSQIL 637 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G ++ +P N+Y + +SG+FTVVN L+++L + LWD ++ ++L ++GS+ +++ Sbjct: 638 GNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTEMGLWDPSLKNELIANNGSVQSLD- 696 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 IPD+LK+I+ T +EI L++ A+ R +IDQ+QS N+++ + + KL ++ AW G Sbjct: 697 IPDNLKEIYKTVWEIKQRILVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKG 756 Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDGKLN-------------------------AVPVTD 930 LKT YYLRSR+A K T+ K V Sbjct: 757 LKTGMYYLRSRAAADAVKFTVDPNSVKAKNASSKKEVVGDKENQPANGEGAKKGPVDPDM 816 Query: 931 PNSSTHSLGIPSSCTSDTECEVC 953 + + I S + EC +C Sbjct: 817 EEEALMAAKIACSLANKDECVMC 839 >gi|18859325|ref|NP_571530.1| ribonucleoside-diphosphate reductase large subunit [Danio rerio] gi|3914656|sp|P79732|RIR1_DANRE RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit; AltName: Full=Ribonucleotide reductase protein R1 class I gi|1695829|gb|AAB37102.1| ribonucleotide reductase protein R1 class I [Danio rerio] Length = 794 Score = 695 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 284/818 (34%), Positives = 443/818 (54%), Gaps = 35/818 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNSRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ + G + L Y L ING E PQ M Sbjct: 113 SPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G +I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P++ L + +G+EFE Y YE+ E + R + A LW ++ ETG P+ Sbjct: 350 LMCPNDCPGLDECWGEEFEKLYAKYEQ-----EGRAKRVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S +Q++G + SNLCTEI +S++E AVCNL SI L + + FD+ Sbjct: 405 MLYKDACNRKSNRQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQ 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLAS + V+ L+ +IDIN + +++A+ SN HR IG+G+ G A L+ P+ S EA Sbjct: 465 KLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ +S ELA E G Y ++ G +G+ D Sbjct: 525 QLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + + +GSI I IPDDLK+++ T +EI +++ Sbjct: 635 QIVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR++ + + TL Sbjct: 695 AADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNK 754 Query: 919 VDGKLNAVPVTDPNSSTHS---LGIPSSCTSDTECEVC 953 K + + T + S + EC +C Sbjct: 755 EKLKETQKTTSSEDEETKERNKAAMVCSLENRHECLMC 792 >gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila melanogaster] gi|12644286|sp|P48591|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleoside-diphosphate reductase subunit M1; AltName: Full=Ribonucleotide reductase large subunit gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster] gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster] gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila melanogaster] gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct] Length = 812 Score = 695 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 294/835 (35%), Positives = 443/835 (53%), Gaps = 42/835 (5%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192 K+ + KL ++ DG + ++ +++ C L V + + +Y G Sbjct: 2 LKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+ + L P+YA + AR + L +E +KA + LY Sbjct: 62 VTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLY 113 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 ++ H +++ + L + + Y+RDF + Y G + L Y L NG Sbjct: 114 NHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGK 173 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRVA+G+ E AVE YNLLS +F ++PTLF + T PQLSSCF Sbjct: 174 IAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+ A V+QGG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFM Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM 350 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV N W+L P + LHD++G EFE YE YE+ E + R + A +LW ++ Sbjct: 351 KRVEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWFAII 405 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG+P++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L Sbjct: 406 EAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMF 465 Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +D+ KL + + L+ +IDIN + + +A+KSN HR +G+G+ GF AL L Sbjct: 466 VTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALIL 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + PY S EA + + E I + A+ AS ELAQ G Y +++GS +G+ D + Sbjct: 526 MRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKV 585 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T+ W +LK+ ++ G+RNS +A PTA+ A I G ++S +P N+ Sbjct: 586 P----------TNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T + Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVW 695 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755 Query: 909 TSVEKSTLKGVDGKL-----NAVPVTDP-----NSSTHSLGIPSSCTSDTECEVC 953 + + T+ G + N P + + S + C C Sbjct: 756 ANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSC 810 >gi|145256649|ref|XP_001401473.1| ribonucleoside-diphosphate reductase large chain [Aspergillus niger CBS 513.88] gi|134058380|emb|CAK38565.1| unnamed protein product [Aspergillus niger] Length = 865 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 279/808 (34%), Positives = 432/808 (53%), Gaps = 33/808 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNNQP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L ING E PQ M Sbjct: 113 APMISKETYEIIMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + EK A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVAVGIHGSDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WT Sbjct: 290 GNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EF+ YE YE+ E + R I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFDALYEKYEK-----EGRGRRTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +IDIN + + +AKKSN HR I LG+ G A L +P+ S E Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I ++AS +LA+E G Y +++GS QG+ D Sbjct: 525 ARQLNIQIFETIYHAGLTASSDLAKEFGTYETYEGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWAALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWEISQRTILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 K+ V N++ + ++ + Sbjct: 755 QEQLKVEDTNVARTNAAYKKRAVGAASS 782 >gi|189196218|ref|XP_001934447.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187980326|gb|EDU46952.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 795 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 273/819 (33%), Positives = 431/819 (52%), Gaps = 36/819 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVVE--------DLYSYVNPKNGKS 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF +++ G + L Y L ING E PQ M Sbjct: 113 QPMISDHVYKVIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ K A+E Y+ +S +F ++PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVAVGIHGEDIPK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV FLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D+YG EFE YE+YE+Q K + A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEKQN-----KGRETVRAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L + +FD+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + R L+ +I++N + +E+A++SN HR IG+G+ G A L +P+ S E Sbjct: 465 QKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A+++S E+A+E G Y +++GS QG+ D + Sbjct: 525 AKKLNIQIFETIYHAALTSSCEIAKELGPYQTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW E M + + GSI I IP++ K ++ T +EI +I+ Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKL---NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K+ N + S + C +C Sbjct: 755 QEQLKVADTNIANEARDGDIYADAVLACSIENPESCVMC 793 >gi|171690020|ref|XP_001909942.1| hypothetical protein [Podospora anserina S mat+] gi|170944965|emb|CAP71076.1| unnamed protein product [Podospora anserina S mat+] Length = 901 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 284/805 (35%), Positives = 431/805 (53%), Gaps = 33/805 (4%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ V C GL V + + +Y G++ + L+ ++ Sbjct: 1 DGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTAQLDDLAAETAAY 60 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + P+YA + AR + L ++ +K + LY + Sbjct: 61 MTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNGRPSPMIAK 112 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 + L + + Y+RDF ++Y G + L Y L +NG +E PQ MRVA+G+ Sbjct: 113 ETYECVMRHKDDLDSAIVYDRDFNYQYFGFKTLERSYLLKLNGKIVERPQHMIMRVAVGI 172 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGAL 387 + E+ +E Y +SS F ++PTLFN+GT QLSSCFL + DD + GI+ L Sbjct: 173 WGDDIERV---IETYTYMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIDGIYDTL 229 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR G Sbjct: 230 KTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPG 289 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WTL P+E Sbjct: 290 AFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMCPNE 349 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+EFE YE YE+ E + + I A LW +L ETG+P++ +KD Sbjct: 350 CPGLADCYGEEFEALYEKYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDA 404 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLAST 624 CN +S QQ++GV+ SSNLCTEI S+ +E AVCNL S+ L N +FD+ KL Sbjct: 405 CNRKSNQQNLGVIRSSNLCTEIVEYSAPDEVAVCNLASLALPQFVDYNEAKFDFKKLHEV 464 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR L+ +ID+N + +++A SN HR IGLG+ G A L +P+ S EA E+ Sbjct: 465 TQIVVRNLNKIIDVNHYPVKEAYNSNMRHRPIGLGVQGLADAFLALRMPFESAEARELNK 524 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E I A++ S +LA+E+G YS+++GS +G+ D + + Sbjct: 525 QIFETIYHAALTMSCQLAKEQGTYSTYEGSPVSKGILQYDMWN----------VKPSDLW 574 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WDELK +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN Sbjct: 575 DWDELKAEIKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNP 634 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R Sbjct: 635 WLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 694 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 +IDQ+QSLN+++ +P+ K+ ++ W +GLKT YYLR+++A + T+ + Sbjct: 695 AFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEALLV 754 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDT 948 V +S P S S Sbjct: 755 QDSAVAKTSSGLKKRAPPGSYMSSP 779 >gi|302915563|ref|XP_003051592.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256732531|gb|EEU45879.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 893 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 279/809 (34%), Positives = 430/809 (53%), Gaps = 38/809 (4%) Query: 145 LKIMMD-----DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESD 197 + + DG ++ V C GL V + + +Y G++ Sbjct: 1 MFVRKRADNLSDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQ 60 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ ++ + P+YA + AR + L ++ +K + LY Sbjct: 61 LDDLAAETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSAVVSDLYHYVNP 112 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 + + L + + Y+RDF ++Y G + L Y L I+G +E P Sbjct: 113 KNDRASPMISQETYECVMRHKEELDSAIVYDRDFQYQYFGFKTLERSYLLKIDGKIVERP 172 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376 Q MRVA+G+ E+ +E YNL+SS F ++PTLFN+GT PQLSSCFL + Sbjct: 173 QHMIMRVAVGIWGDNIERV---LETYNLMSSKFFTHASPTLFNAGTPQPQLSSCFLVDMK 229 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + GI+ L+ AM++K +GG+G + +R G++I GTNG S GV P L+V N+TA Sbjct: 230 EDSIEGIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVTPMLRVFNNTAR 289 Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QG KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV + Sbjct: 290 YVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEK 349 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N WTL P+E L D YG+EFE YE YE+ K + + A LW +L E Sbjct: 350 NGDWTLMCPNECPGLADCYGEEFEALYEKYEKA-----GKGRKTMKAQKLWYAILEAQTE 404 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FAN 613 TG+P++ +KD CN +S Q+++G + SSNLCTEI + +E AVCNL S+ L + + Sbjct: 405 TGNPFMLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPSFINYDE 464 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 +D+ KL +T VR L+ +ID+N + + +A+ SN HR IG+G+ G A L +P Sbjct: 465 ACYDFQKLHEVTQTVVRNLNRIIDVNHYPVPEARNSNMRHRPIGVGVQGLADAFLALRMP 524 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + SPEA E+ + E I A++ASV+LA+E G YS+FKGS +G+ D Sbjct: 525 FESPEARELNKQIFETIYHAALTASVQLAKEEGPYSTFKGSPASEGILQFDMWN------ 578 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + W+ L+++VK G RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 579 ----VKPSDLWDWESLREQVKEHGTRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRR 634 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 ++G+F VVN +L+ +L LW ++M + + +GSI NI IP ++K ++ T +EI Sbjct: 635 VLAGEFQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPAEVKALYKTVWEISQ 694 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +++ A+ R +IDQ+QSLN+++ +P+ K+ ++ W +GLKT YYLR+++A + Sbjct: 695 RQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPI 754 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 + T+ K+ Sbjct: 755 QFTVDQQALKVADANSAQIRPLKKRAPPA 783 >gi|310798516|gb|EFQ33409.1| ribonucleotide reductase [Glomerella graminicola M1.001] Length = 894 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 276/802 (34%), Positives = 430/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVRKRDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNNKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMIAKDTYDAVMRHKEELDSAIVYDRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+SS F ++PTLFN+GT QLSSCFL + D + Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S GV+P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGVVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +FLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D YG+EFE YE YE+ K + I A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADCYGEEFEALYEKYEQM-----GKGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD N +S Q+++G + SSNLCTEI + +E AVCNL S+ L N+ +D+ Sbjct: 405 MLYKDAANRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDYNEGVYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID+N + +++A+ SN HR IGLG+ G A L +P+ SPE Sbjct: 465 QKLHEVTQVVVRNLNRIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++ SV+LA+E G Y +++GS QG+ D + Sbjct: 525 ARDLNKKIFETIYHAALTMSVQLAREEGPYETYEGSPVSQGILQYDMWN----------V 574 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + WD LK+++K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 575 KPSDLWDWDALKEQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW +AM + + +GSI NI IP ++K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWEISQRTVVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ +P+ K+ ++ W +GLKT YYLR+++A + + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 K+ V Sbjct: 755 QEALKVADSAVGKVLKKRAPPP 776 >gi|258566183|ref|XP_002583836.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus reesii 1704] gi|237907537|gb|EEP81938.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus reesii 1704] Length = 884 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 275/800 (34%), Positives = 429/800 (53%), Gaps = 33/800 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNNRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQKTYEIVMKHSEELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + EK A+E YNL+S +F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHGDDIEK---AIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA Y+E WH DV EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L + + +D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDPVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + +R L+ +ID N + + +A+KSN HR I +G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVLIRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I +++AS +LA+ G Y +++GS QG+ D + Sbjct: 525 ARQLNTQIFETIYHASLTASCDLAKIDGPYETYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + WD LKK + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --SDLWDWDSLKKEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHS 937 K+ V N Sbjct: 755 QEQLKVADTNVARTNGIAKK 774 >gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta] gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta] Length = 812 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 292/826 (35%), Positives = 438/826 (53%), Gaps = 42/826 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L V + + +Y G++ +L+ Sbjct: 11 KLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + L P+YA + AR + L +E +KA + LY + Sbjct: 71 AAEIAAGLTCYHPDYAILAARIAVSNLHKET--------KKAFSDVFEDLYNHVNKETNQ 122 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + H +++ + L + + Y+RDF + Y G + L Y L NG E PQ Sbjct: 123 KVSLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKTNGKIAERPQHML 182 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380 MRVA+G+ E AVE YNLLS +F ++PTLF + T PQLSSCFL T+ D + Sbjct: 183 MRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSI 239 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ A V+Q Sbjct: 240 EGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA YLE WH DV EFL+L+KNTG + R D+ A WIPDLFMKRV N W Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDW 359 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L D++G EFE YE YE+ E + R + A +LW ++ ETG+P Sbjct: 360 SLMCPHKCPGLQDVWGDEFEKLYEKYEQ-----EGRANRTVKAQSLWYAIIEAQVETGNP 414 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDY 618 ++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L +D+ Sbjct: 415 YMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTPEKTYDF 474 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + R L+ +IDIN + + +A+KSN HR +G+G+ GF AL L+ PY S E Sbjct: 475 KKLKEVTKIVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEE 534 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I + A+ AS ELAQ G Y +++GS +G+ D + Sbjct: 535 AGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVP-------- 586 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T+ W +LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y + +SG+ Sbjct: 587 --TNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T +EI I+ Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEISVKSTIK 704 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + + T+ Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVN 764 Query: 918 GVDG----------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 G + + + + S + C C Sbjct: 765 KKKGAEGINGQNGTSDESSKQFEEDRERKMADMVCSLENKDACMSC 810 >gi|238491914|ref|XP_002377194.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus flavus NRRL3357] gi|317146285|ref|XP_001821413.2| ribonucleoside-diphosphate reductase large chain [Aspergillus oryzae RIB40] gi|220697607|gb|EED53948.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus flavus NRRL3357] Length = 854 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 278/808 (34%), Positives = 433/808 (53%), Gaps = 33/808 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYINPKNKKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L I+G E PQ M Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRIDGKVAERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ + EK A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVSVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYERYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L ++D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +IDIN + + +AK SN HR I LG+ G A L +P+ SPE Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS +LA++ G Y S++GS QG+ D Sbjct: 525 AKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 K+ V N+S + ++ Sbjct: 755 QEALKVADTNVARANASFRKRAVGAASN 782 >gi|72084113|ref|XP_780425.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain isoform 1 [Strongylocentrotus purpuratus] gi|115956273|ref|XP_001177269.1| PREDICTED: similar to ribonucleoside-diphosphate reductase M1 chain [Strongylocentrotus purpuratus] Length = 797 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 287/817 (35%), Positives = 438/817 (53%), Gaps = 35/817 (4%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203 + DG ++ ++ C L + ++ + +Y G++ +L+T Sbjct: 5 YVQKRDGRKEIVMFDKITSRIQRLCYNLNSDFIDPAVITMKVISGVYPGVTTVELDTLAA 64 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ T+ K P+YA + AR + L +E +K M+ L+ R Sbjct: 65 ETAATMTTKHPDYAVLAARIAVSNLHKET--------KKLFSAVMKDLFEYTNPRNGLHS 116 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 +++ + L + + Y+RDF + Y G + L Y L ING E PQ MR Sbjct: 117 PLISEETMMIINDNADRLNSAVLYDRDFEYNYFGFKTLERSYLLKINGKVAERPQHMLMR 176 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ K+ A++ YNLLS F ++PTLFN+GT PQLSSCFL T+ DD + G Sbjct: 177 VSVGIHGKD---IDAAIQTYNLLSDRWFTHASPTLFNAGTNRPQLSSCFLLTMKDDSIDG 233 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 234 IYETLKNCALISKTAGGIGLNIHNIRASGSYIAGTNGNSNGLLPMLRVYNNTARYVDQGG 293 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH D+ +FLD +KN G + +R D+ WIPDLFMKRV + WTL Sbjct: 294 NKRPGAFAIYLEPWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDWTL 353 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E LH+++G+EFE YE YE+ + + I A ALW ++ ETG P++ Sbjct: 354 MCPHESPGLHEVWGEEFETLYEGYEKA-----GRGRKTIKAQALWYAIIESQTETGTPYM 408 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD CN +S QQ++G + SNLCTEI SS++E AVCNL SI L + FD+ KL Sbjct: 409 VYKDHCNKKSNQQNLGTIKCSNLCTEIVEYSSADEVAVCNLASIALPRFVQDRTFDFKKL 468 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 L+ +IDIN + + +AK+SN HR IG+G+ G A L+ P+ S EA + Sbjct: 469 EEVTMVITENLNKIIDINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRFPFESVEAKK 528 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E I + A+ AS ++A + G Y ++KGS +G+ D G+ T Sbjct: 529 LNIQIFETIYYAALKASCKIAAKLGPYETYKGSPVSKGILQQDMWGVTP----------T 578 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 W LK + G+RNS +A PTA+ A I G +++I+P N+Y + +SG+F V Sbjct: 579 DLHDWASLKADIAKHGVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRRVLSGEFQV 638 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LW + M ++L ++GSI NI IPDD+K ++ T +EI +I+ A Sbjct: 639 VNHHLLRDLTDMGLWSDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQKTIIQMAV 698 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLN+++ EP+ KL ++ AW GLKT YYLR+R A K TL + Sbjct: 699 DRGAYIDQSQSLNIHIAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPAADPIKFTLDKLS 758 Query: 921 GKLNA----VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K + + + + + S + C C Sbjct: 759 LKEKSGAKLTEAEEKERAKNEAAMMCSLENKDACVSC 795 >gi|254565653|ref|XP_002489937.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|238029733|emb|CAY67656.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|328350349|emb|CCA36749.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris CBS 7435] Length = 867 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 277/784 (35%), Positives = 426/784 (54%), Gaps = 35/784 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ +L+ Sbjct: 1 MYVFKRDGHKEPVRFDKITARVSRLCYGLDPKHVDAVAITQRVISGVYHGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + ++ LY + + Sbjct: 61 AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQYSQVTKE--------LYEYINPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ L + + Y+RDF + Y G + L Y L ING+ E PQ M Sbjct: 113 SPLVSEDTYNIVQKHADELNSAIVYDRDFQYNYFGFKTLERSYLLRINGNVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + + +E YN +S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 173 RVAIGIHGDDIARV---IETYNFMSQKYFTHASPTLFNAGTPHPQMSSCFLVAMRDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRATGSYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ F+D+RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHADIFAFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L D+YG EFE YE YE+ E + + I A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLADVYGDEFEELYERYEK-----EGRGRQTIKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN ++ Q+++GV+ SSNLC EI SS EETAVCNL SI L + + Sbjct: 405 MLYKDACNKKTNQKNLGVIKSSNLCCEIVEYSSPEETAVCNLASIALPAFVETDDTHCWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +++KL + R L+ +ID N + + +A++SN +R I +G+ G A L IP+ S Sbjct: 465 NFEKLHEITKVVTRNLNRIIDRNFYPVPEARRSNMRNRPIAVGVQGLADAFMKLRIPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 PEA ++ + E I A+ AS ELA E GAY +F+GS QG+ D Sbjct: 525 PEAKQLNIQIFETIYHAALEASNELAVEEGAYETFQGSPASQGILQYDLWDKKPSEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 W+ LK ++ + G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WEWESLKAKIVSTGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L LWD+ M + + +GSI N+ IP+ LK ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVDLGLWDDNMKNHIISDNGSIQNLPNIPEQLKGLYKTVWEISQKTI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN++L P+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRSAYIDQSQSLNIHLMAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 LKGV 919 + V Sbjct: 755 VDKV 758 >gi|325190738|emb|CCA25231.1| ribonucleosidediphosphate reductase large subunit p [Albugo laibachii Nc14] Length = 782 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 271/814 (33%), Positives = 427/814 (52%), Gaps = 39/814 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ + + C L + V + + +Y G++ S+L+ Sbjct: 1 MYVIKRDGRKEVVKFDKITARITKLCYNLNTEYVDPVQISQKVIAGVYPGVTTSELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+++K+ AR + L + K +Q Y Sbjct: 61 AETAAYCSTQHPDFSKLAARIAISNLHKNT--------NKVFSENIQLFYENKHDTTKVP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + +RDF ++Y G + L Y L +NG E PQ M Sbjct: 113 APLIAEDVYRVVIKNKEALNSAIIGDRDFDYDYFGFKTLEKSYLLRVNGKVCERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E + +E Y +S F +TPTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVAVGIH---KENLEAVLETYECMSQKFFTHATPTLFNAGTPRPQLSSCFLLSMQDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A ++K++GG+G + +R ++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKQCACISKWAGGIGVSISNIRCTNSYIRGTNGSSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH D+ EFL+LRKN G++ R D+ A WIPDLFMKRV N W+ Sbjct: 290 GGKRKGSFAMYLEPWHADIFEFLELRKNHGNELHRARDLFYALWIPDLFMKRVEDNQEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L++ +G EF+ Y YE + + A LW +L ETG P+ Sbjct: 350 LFCPNEAPRLYETWGNEFDALYLKYESMNIA-----RKTVKAQQLWFAILDSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S QQ++G + SSNLC EI S S+E AVCNL S+ L +F + K Sbjct: 405 MLYKDACNRKSNQQNLGTIRSSNLCCEIIEYSDSKEVAVCNLASVALSKFVYQKEFQFTK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + + L+ +IDIN + I +A+ SN HR IG+G+ G L+ +P+ S A Sbjct: 465 LYEITKIVTKNLNKIIDINYYPIPEAQSSNQRHRPIGIGVQGLADTFLLMGLPFESKAAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ E E + F A+ AS+ELA+E G Y S+ GS +G F D + + Sbjct: 525 DLNKEIFETMYFAAMEASMELARELGPYESYSGSPVSKGTFQFDMWQVTPD--------- 575 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W LK++V G+RNS +A PTA+ A I G +SI+P N++ + ++G+FT Sbjct: 576 SGRWDWKSLKEQVAAHGIRNSLLLAPMPTASTAQILGNCESIEPFTSNMFNRRVLAGEFT 635 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +L+ EL + +LW + + + GS+ NI IP ++K+ + T +EI +++ A Sbjct: 636 IVNKYLMEELIEMNLWTSDVRNQILRDRGSVQNIVEIPPNVKEKYKTVWEIKQKSILDMA 695 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +I Q+QSLN+++ +P+ KL ++ AW GLKT YYLR+R + T+ Sbjct: 696 ADRGAYICQSQSLNIHIADPTVSKLTSMHFYAWKKGLKTGMYYLRTRPRADAIQFTVDQK 755 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +A+ + EC VC Sbjct: 756 SLDDSALAKLSQTQDVDE---------EEECLVC 780 >gi|145340510|ref|XP_001415366.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575589|gb|ABO93658.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 817 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 287/837 (34%), Positives = 444/837 (53%), Gaps = 53/837 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 L ++ DG ++ +++ GL + IV + ++ G++ +L+ Sbjct: 4 LYVVKRDGREEPVAFDKITARIKKLAYGLSQEFCDPVIVAQKVCMGVFAGVTTKELDELA 63 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ K P+YA++ AR + L + +K+ M +Y R + Sbjct: 64 AETAASMTSKHPDYAQLAARIAVSNLHKTT--------KKSFSETMTQMYEHVNERNGKW 115 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L ++ Y+RDF ++Y G + L Y L I+G +E PQ M Sbjct: 116 SPLLADDVYEIIKANAERLDAEIVYDRDFEYDYFGYKTLERSYLLRIDGKVVERPQHLLM 175 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ E ++AV+ Y++LS ++PTLFN+GT PQLSSCFL + D + Sbjct: 176 RVSIGIH---KEDIEKAVDTYHMLSERWMTHASPTLFNAGTPRPQLSSCFLIAMKEDSIE 232 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A ++K +GG+G +R ++I GTNG S G+IP L+V NDTA V+QG Sbjct: 233 GIYDTLKECACISKSAGGIGLSIHDIRATSSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 292 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA Y+E WH D+ ++LDLRKN G + R D+ W DLFMKRV N WT Sbjct: 293 GGKRKGAFAIYIEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGDWT 352 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D +G+EFE Y+ YE E K + I A LW +L ETG+P+ Sbjct: 353 LMCPNECPGLADCWGEEFETLYQKYEA-----EGKGKKTIKAQQLWFAILESQVETGNPY 407 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTEI +S EETAVCNL SI L Sbjct: 408 MLFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPEETAVCNLASIALPRFVIENNPSSPT 467 Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 FD+DKL R R L+ +ID+N + +E AK+SN HR IG Sbjct: 468 GRTEVKKLVGSLKAKERYFDHDKLFEITRKVTRNLNRIIDVNYYPVETAKRSNMRHRPIG 527 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+ G LL + + SPEA ++ E E I F A++ S LA G Y++++GS Sbjct: 528 LGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNALAVVEGPYTTYEGSPVS 587 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 +G+ D GL + R W L+ + G+RNS +A PTA+ + I G Sbjct: 588 KGILQPDMWGLTQMPGGD-------RHDWAGLRAAIAQHGVRNSLLVAPMPTASTSQILG 640 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 ++ +P N+Y + +SG+FTVVN L+++L + LWD + + L ++GS+ ++ I Sbjct: 641 NNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTELGLWDPELKNSLIANNGSVADL-EI 699 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P++LK I+ T +EI L++ A+ R +IDQ+QS N+++ +P+ KL ++ AW GL Sbjct: 700 PENLKAIYKTVWEIKQRILVDMAADRGAFIDQSQSFNVHMSDPNSGKLTSLHFYAWKKGL 759 Query: 898 KT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 KT YYLRSR+A K T+ ++ + + + + + S T+ +C +C Sbjct: 760 KTGMYYLRSRAAADAIKFTVDVKQKQVTKM-SEEEKEAYLAAKLQCSLTNKDDCVMC 815 >gi|91080433|ref|XP_968671.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum] gi|270005754|gb|EFA02202.1| hypothetical protein TcasGA2_TC007859 [Tribolium castaneum] Length = 808 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 277/824 (33%), Positives = 442/824 (53%), Gaps = 42/824 (5%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203 + DG + ++ +++ C GL + V + + +Y G++ +L+T Sbjct: 9 YVCKRDGRKEEVHIDKITSRIQKLCYGLNMEFVDPVSITLKVISGLYPGVTTVELDTLAA 68 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ + P+YA + AR + L +E + L+ + + Sbjct: 69 ETAAMMTTNHPDYAILAARIAVSNLHKETKKQFSDV--------IDDLHKAVSSKTGRKT 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 H +++ + L + + Y+RDF++ Y G + L Y L ING +E PQ MR Sbjct: 121 QMISDEHHAIVMKNADRLNSCIIYDRDFSYNYFGFKTLERSYLLKINGKIVERPQHMLMR 180 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 VA+G+ + A+E YN +S +F ++PTLF++ T PQLSSCFL T+P D+L G Sbjct: 181 VAVGIHGSD---IDSAIETYNYMSEKYFTHASPTLFSAATPKPQLSSCFLVTLPEDNLEG 237 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGL----GAHIHGTNGKSQGVIPFLKVANDTAVAV 438 I L + AM++K +GGLG +R + GT S G++P L+V N++A V Sbjct: 238 ISRCLTQCAMISKTAGGLGVSIHNLRAKGTTFRTTLAGTPKVSDGIVPVLRVFNNSARYV 297 Query: 439 NQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QG KR GA YLE WH D+ +FL+L+KNTG ++ R D+ A W PDLFM+RV + Sbjct: 298 DQGGNKRPGACAIYLEPWHADILDFLNLKKNTGKEQLRARDLFFALWTPDLFMRRVKNDE 357 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P + L D +G+EFE YE YE + + R++ A +WR + ETG Sbjct: 358 KWSLMCPHQSPGLADCWGEEFEKLYEKYE-----TDGRYVRQLPARDVWRAICVSQVETG 412 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615 P++ +KD CN +S QQ++G + SSNLCTEI +S +E AVCNL SI N+ + Sbjct: 413 TPYMLYKDACNRKSNQQNLGTIRSSNLCTEIVEFTSPDEIAVCNLASIAVNMFVKADRSG 472 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +D++KL + + L+ VID+N + + +A+KSN HR +G+G+ G A LL +P+ Sbjct: 473 YDFNKLKEITKVVAKNLNKVIDLNYYPLPEARKSNLRHRPVGIGVQGLADAFILLRMPFD 532 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 SPEA + + E + + A+ AS ELA++ G Y +++GS QGV D G+ Sbjct: 533 SPEAKALNRQIFETLYYGALEASCELAEKYGPYETYEGSPVSQGVLQYDMWGVTP----- 587 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 T+ W +LKK++ G+RNS +A PTA+ A I G ++S +P N+YV+ + Sbjct: 588 -----TNLWDWSDLKKKIAKYGVRNSLLLAPMPTASTAQILGNNESTEPYTSNIYVRRVL 642 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN L+ +L +R LWD+ M + + + GSI NI IPDDLK+++ T +EI Sbjct: 643 SGEFQVVNQHLLKDLTERGLWDDTMKNQIIANYGSIQNIPGIPDDLKQLYKTVWEISQKV 702 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ A+ R +IDQ+QS+N+++ P+ + ++ W GLKT YYLR++ A + + Sbjct: 703 IIDMAADRGAFIDQSQSMNIHIAAPNYGVMSSMHFYGWDKGLKTGMYYLRTKPAANPIQF 762 Query: 915 TLKGVD---GKLNAVPVTDPNSSTHSLGIPSSCT--SDTECEVC 953 T+ V +T C+ + CE+C Sbjct: 763 TVDKSKLITKTSTGVGKVQETKTTPEEEAALVCSLRNPEACEMC 806 >gi|86134367|ref|ZP_01052949.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter sp. MED152] gi|85821230|gb|EAQ42377.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter sp. MED152] Length = 799 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 282/820 (34%), Positives = 440/820 (53%), Gaps = 34/820 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V++ C GL V V + +YDG++ S+L+ Sbjct: 1 MYVVKRDGKKEPVMFDKITARVKKMCYGLNKIVDPVKVAMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ T+ P+YAK+ AR + L + +K+ M LY R ++ Sbjct: 61 ETAATMTTAHPDYAKLAARIAVSNLHKNT--------KKSFSETMDDLYFYVNPRTEKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y RDF ++Y G + L Y L +NG E PQ MR Sbjct: 113 PLLADDVYEIIKANAEKLDSTIIYNRDFNYDYFGFKTLERSYLLKLNGQIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ + A+ Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + G Sbjct: 173 VSIGIHKND---IDEAIATYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLQMQDDSIEG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G +R G++I GTNG S G++P L+V NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSLHNIRATGSYIAGTNGTSNGIVPMLRVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ YLE WH D+ +FLDL+KN G + R D+ A WI DLFMKRV ++ WTL Sbjct: 290 GKRKGSFAMYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVQEDGEWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E L+D YG+EFE Y +YE K + I A LW K+L ETG P++ Sbjct: 350 MCPHECPHLYDTYGEEFERLYTSYEAA-----GKGRKTIKARELWEKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QF 616 +KD N ++ Q+++G + SSNLCTEI ++ +E AVCNL SI L + F Sbjct: 405 LYKDAVNRKTNQKNLGTIRSSNLCTEIMEYTAKDEVAVCNLASIALPMFVSERENGEKYF 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++ KL + R LD VID N + +++A+ SN HR +GLG+ G L +P+ S Sbjct: 465 NHKKLFDVTKKVTRNLDTVIDANFYPVKEAENSNFRHRPVGLGIQGLADTFINLRLPFTS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ + E + + A+++S+E+A+ + YS+FKGS +G F + G+ Sbjct: 525 DEAKKLNQDIFETMYYAAVTSSMEIAKAKEPYSTFKGSPMSEGEFQFNMWGVNDNEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + WD+L+K V G+RNS +A PTA+ + I G +++ +P N+Y + +S Sbjct: 582 ----SGNWDWDKLRKNVMKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLS 637 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN L+ +L + LWD M + +GSI +IE IP +L++++ T +E+ + Sbjct: 638 GEFIVVNKHLLEDLVELGLWDNDMKESIMRANGSIQHIEEIPSELRELYKTVWEMSMKDI 697 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A R +IDQ+QSLNL+L +P KL ++ AW GLKT YYLR++SA + + T Sbjct: 698 IDMARHRGYFIDQSQSLNLFLKDPDYGKLTSMHFYAWKSGLKTGMYYLRTKSAVNAIQFT 757 Query: 916 LKGVDGK--LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + P + D +C +C Sbjct: 758 VSKEKKAEVIEEEKPMTPAEFKAMVDASKGAGPDDDCLMC 797 >gi|86132509|ref|ZP_01051103.1| ribonucleoside-diphosphate reductase large chain [Dokdonia donghaensis MED134] gi|85817070|gb|EAQ38254.1| ribonucleoside-diphosphate reductase large chain [Dokdonia donghaensis MED134] Length = 874 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 285/800 (35%), Positives = 440/800 (55%), Gaps = 27/800 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V++ C L D V + + +YDG++ S+L+ Sbjct: 1 MYVVKRDGRQEPVMFDKITARVKKLCYELSDFVDPVKISMRVIEGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ ++ P+YAK+ AR + L + + + M LY R ++ Sbjct: 61 ETAASMTTSHPDYAKLAARISVSNLHKNTKKSFSEV--------MTDLYQYVNPRTGKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y RDF ++Y G + L Y L ING E PQ MR Sbjct: 113 PMVADEVYKVIMDNKDELDSTIIYNRDFGYDYFGFKTLERSYLLKINGQIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ L + + A E Y L+S +F +TPTLFNSGT PQ+SSCFL T+ DD + G Sbjct: 173 VSIGIHLND---LEAAKETYMLMSKKYFTHATPTLFNSGTPKPQMSSCFLLTMKDDSIEG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G +R GA+I GTNG S G++P LKV NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNIRAKGAYIGGTNGTSNGIVPMLKVFNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ +FLDL+KN G + R D+ A WI DLFMKRV ++ WTL Sbjct: 290 GKRKGSFAIYMEPWHADIFDFLDLKKNHGAEEMRARDLFYAMWISDLFMKRVQEDGKWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E DL +++G+EFE Y YE+ E + R I A LW K++ ETG P++ Sbjct: 350 MCPNECPDLFNVHGEEFEALYTKYEQ-----EERGRRTIKARELWEKIMESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N FD+ +L Sbjct: 405 LYKDAANRKSNQKNLGTIRSSNLCTEILEYTSEDEVAVCNLASIALPMFVKNGAFDHQEL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + A + L+ VID N + + +A+ SN HR IGLG+ G L +P+ S EA + Sbjct: 465 YNITVRATKNLNKVIDRNYYPVIEAENSNMRHRPIGLGVQGLADTFIKLRLPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A++AS ++A+ G Y SF+GS QG F + + E + Sbjct: 525 LNQEIFETLYFAAVTASKDMAKVEGPYQSFEGSPISQGEFQYNLWNIKDEEL-------S 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W L+K V G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWDWASLRKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L +LW++ + + + +GSI I+ IP DLK+++ T +E+ +I+ + Sbjct: 638 VNKHLLEDLVALNLWNDDLKAAIMRANGSIQGIDVIPADLKELYKTVWEMSMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR++SA +K TL Sbjct: 698 QRGYFIDQSQSLNLFMEGANFAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAKKFTLSAKK 757 Query: 921 GKLNAVPVTDPNSSTHSLGI 940 + T P + Sbjct: 758 KEAPVTAPTAPKQQVAARAA 777 >gi|302844064|ref|XP_002953573.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f. nagariensis] gi|300261332|gb|EFJ45546.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f. nagariensis] Length = 824 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 291/844 (34%), Positives = 450/844 (53%), Gaps = 58/844 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 + ++ DG ++ + + GL + +V + +Y G++ S+L+ Sbjct: 3 SMYVIKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDEL 62 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ L P+YA + AR + L ++ +K+ M+ LY R + Sbjct: 63 AAETAAALTSTHPDYAILAARIAVSNLHKKT--------KKSFSETMEALYNYKNPRTGQ 114 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 E ++ + L ++++Y+RDF F+Y G + L Y L +NG +E PQ Sbjct: 115 EASLIDKEVFQIIIQNAARLNSEIRYDRDFDFDYFGFKTLERSYLLRMNGEVVERPQQML 174 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + + A++ Y+ +S F ++PTLFNSGT PQLSSCFL + DD + Sbjct: 175 MRVAVGIH---KDDIESAIQTYHAMSERWFTHASPTLFNSGTPRPQLSSCFLLCMRDDSI 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+Q Sbjct: 232 DGIYDTLKECAVISKSAGGIGLSIHCIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 291 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KRKGA Y+E WH DV EFLDLRKN G + R D+ WIPDLFM+RV + W Sbjct: 292 GGGKRKGAFAIYIEPWHADVFEFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEW 351 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +LF P+E DL + +G +FE Y YER E + + + A LW +L ETG+P Sbjct: 352 SLFCPNEAQDLAECWGADFERLYTQYER-----EGRARKVVRAQQLWFAILEAQVETGNP 406 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------- 612 ++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL SI L Sbjct: 407 YMLYKDSCNKKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPG 466 Query: 613 -------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 N FD++KLA + A R L+ +ID+N + KA+KSN HR IGLG Sbjct: 467 WESKKLVGSLDAPNRFFDFEKLAEMTQMATRNLNKIIDVNYYPHPKAQKSNMRHRPIGLG 526 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G +L +P+ SPEA E+ + E I + A+SAS ELA+ G Y +++GS QG Sbjct: 527 VQGLADTFIILGMPFDSPEAAELNRQIFEVIYYAALSASCELAERDGTYETYEGSPVSQG 586 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + D G+ SR W L+ R+ G+RNS +A PTA+ + I G + Sbjct: 587 ILQPDMWGVKPTGVG-------SRCDWPALRDRIARHGVRNSLLVAPMPTASTSQILGNN 639 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + +P N+YV+ +SG+FTVVN L+++L + LW + ++L +GS+ +++ IP Sbjct: 640 ECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGLWSPELKNELVAANGSVADLD-IPV 698 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +LK ++ T +EI L++ A+ R +IDQ+QS N+++ +P+ KL ++ AW GLKT Sbjct: 699 ELKALYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKT 758 Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS---------LGIPSSCTSDTE 949 YYLR+++A K T+ P S + + S + Sbjct: 759 GMYYLRTKAAADAIKFTVDQQALSRKKASNPPPTLSLPTGKFSVGAQLAAMVCSLENKEA 818 Query: 950 CEVC 953 C +C Sbjct: 819 CLMC 822 >gi|295659650|ref|XP_002790383.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb01] gi|226281835|gb|EEH37401.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides brasiliensis Pb01] Length = 878 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 279/803 (34%), Positives = 428/803 (53%), Gaps = 33/803 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNRRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQSTYEIVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAIGIHGDDVERV---IETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L + +D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+AK+SN HR I G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I ++AS ELA+ G YSS++GS QG+ D G+ Sbjct: 525 AKLLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGI 940 K+ V N + Sbjct: 755 QEQLKVADTNVARVNGAMKKRAA 777 >gi|255710753|ref|XP_002551660.1| KLTH0A04686p [Lachancea thermotolerans] gi|238933037|emb|CAR21218.1| KLTH0A04686p [Lachancea thermotolerans] Length = 879 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 278/815 (34%), Positives = 424/815 (52%), Gaps = 37/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y+G++ +L+ Sbjct: 1 MFVYKRDGRREPVKFDKITARVSRLCYGLDPNHVDAVKITQRIISGVYEGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ + H+ + Sbjct: 61 AETCAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVSDLFHY--------VNPKNGIH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 SPMISQEVFDIIQKHKDELNSAIVYDRDFQYNYFGFKTLERSYLLRINGEVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + +E YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 173 RVAVGIHGD---NIPKVIETYNLMSLKYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A W+PDLFMKRV +N WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L D+YG EFE YE Y + E + + I A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLSDVYGDEFEALYERYVQ-----EGRGRKTIKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------N 614 + +KD CN +S Q+++GV+ SSNLC EI S+ +ETAVCNL S++L A Sbjct: 405 MLYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASLSLPAFIETSEDGQTQ 464 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++DKL + L+ VID N + +E A+ SN HR + LG+ G A +L IP+ Sbjct: 465 WYNFDKLHEIAKVVTHNLNQVIDRNYYPVESARNSNMRHRPVALGVQGLADAFMILRIPF 524 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA E+ + E I A+ S ELA E G Y +F+GS QG+ D Sbjct: 525 DSQEAKELNIQIFETIYHAALERSNELAVEHGPYETFEGSPASQGILQFDMWDKKP---- 580 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 T W+ LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 581 ------TDLWDWETLKAKIVKTGLRNSLLLAPMPTASTSQILGNNECFEPYTSNMYSRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F +VN +L+ +L +W++AM S + +GSI N+ IP LK ++ T +E+ Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWNDAMKSHIISDNGSIQNLPNIPQKLKDLYKTVWELSQK 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +IE A+ R +IDQ+QSLN+++ P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 695 TIIEMAADRACYIDQSQSLNVHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 T+ + D + L +P Sbjct: 755 FTIDKSVASMAGDKEADLQNLHRPLYVPRKMNFSE 789 >gi|50305185|ref|XP_452551.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641684|emb|CAH01402.1| KLLA0C07887p [Kluyveromyces lactis] Length = 875 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 281/815 (34%), Positives = 433/815 (53%), Gaps = 37/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL + + + +Y+G++ +L+ Sbjct: 1 MFVYKRDGHKEPVQFDKITARVSRLCYGLDAKHIDAVKITQRIISGVYEGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ + LY R Sbjct: 61 AETCAYMTTIHPDYATLAARIAISNLHKQTTKQFSQVVD--------DLYQWVNPRTGIH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF F Y G + L Y L I+G E PQ M Sbjct: 113 SPMISDEVYKIVMDNKDTLNSAIVYDRDFQFNYFGFKTLERSYLLRIDGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S +F ++PTLFN+GT HPQ+SSCFL + D + Sbjct: 173 RVAVGIHGNDIERV---LETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGIIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA Y+E WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFALYIEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNQDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D YG+EF + E + + + A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLPDAYGEEF-----EEMYERYEREGRGRKTVKAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN++S Q+++G + SSNLC EI S ETAVCNL SI L A Sbjct: 405 MLYKDACNLKSNQKNLGTIKSSNLCCEIVEYSDPTETAVCNLASIALPAFIERSTDGKTQ 464 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 ++++KL S + R L+ +ID N + +E A++SN HR I LG+ G A +L +P+ Sbjct: 465 TYNFEKLHSIAKVLTRNLNRIIDRNYYPVETARRSNMRHRPIALGVQGLADAFMMLRLPF 524 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA ++ E E I A AS+ELA+E G Y +F GS QG D G Sbjct: 525 DSEEAKKLNIEIFETIYHGACEASMELAKEEGHYETFPGSPASQGQLQFDLWGKTP---- 580 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 T+ W+ LK+++K GMRNS +A PTA+ + I G ++ +P N+Y + Sbjct: 581 ------TALWDWNTLKEQIKLNGMRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F +VN +L+++L +WDEAM S + +GSI N+ IP +LK ++ T +E+ Sbjct: 635 LSGEFQIVNPYLLHDLVDLGIWDEAMKSHIIADNGSIQNLPNIPQELKDLYKTVWELSQK 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I+ A+ R +IDQ+QSLN+++ P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 695 HIIDMAADRAAYIDQSQSLNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 T+ + A V D + + IP + + Sbjct: 755 FTIDKSVAEQAANSVVDLSKLNRPVYIPHKASVND 789 >gi|294948956|ref|XP_002785979.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|294948958|ref|XP_002785980.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|239900087|gb|EER17775.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|239900088|gb|EER17776.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] Length = 792 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 276/820 (33%), Positives = 440/820 (53%), Gaps = 41/820 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 + ++ +G ++ + GL + V + + + +Y G++ ++L++ Sbjct: 2 VMYVIKRNGQKADVQFDKITRRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH-HEMQCLYPEYFCRYI 260 + + + P+++ + AR + L + + + + + + Sbjct: 62 AAETCAYMSQVHPDFSTLAARIAVSNLHKNTHEKFSDTVTELYQITDGRGRHAPLVSEEV 121 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQ 318 V A + L + YERDF ++Y G + L Y L + S IE PQ Sbjct: 122 YNIVMA----------NAEKLDKAIDYERDFDYDYFGFKTLERSYLLKRPSDKSCIERPQ 171 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 MRVA+G+ + A+E Y+L+S+ F +TPTLFNSGT HPQ+SSCFL ++ Sbjct: 172 HMIMRVAVGIHGDD---VDAAIETYDLMSTRVFTHATPTLFNSGTPHPQMSSCFLLSMKG 228 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L++ AM++K +GG+G T +R ++I GTNG S G++P L+V NDTA Sbjct: 229 DSIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTARY 288 Query: 438 VNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QGG KRKG+ YLE WH DV EFLDL+KN G + +R D+ A WIPDLFMKRV N Sbjct: 289 VDQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVMSN 348 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 WTLF P+E L D YG EFE YE YE+ + + + A +LW K+L ET Sbjct: 349 GDWTLFCPNEAPGLQDTYGDEFEALYEKYEK-----DGIGRKTVKAQSLWFKILESQQET 403 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANN 614 G P++ +KD N +S Q+++G + SNLC EI +S +E AVCNL SI N+ Sbjct: 404 GIPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKKTR 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +D+D+L + R L+ VID N + + +A++SN HR IG+G+ G A L+ PY Sbjct: 464 TYDFDRLHRVTKVVTRNLNKVIDRNYYPVPEARRSNMRHRPIGIGVQGLADAFLLMRFPY 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPEA+++ +E E I A AS+ELA++ G Y +F+GS +G+ D + + Sbjct: 524 ESPEALKLNNEIFETIYHAACEASMELAKKDGPYETFEGSPASEGILQFDMWDVTPD--- 580 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + R W+ LK+ +K GMRNS +A PTA+ A I G +++ +P QN+YV+ Sbjct: 581 ------SGRWDWNSLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 ++G+F VN LV++L + LW++ + + GS+ +E IP ++++++ T +EI Sbjct: 635 LAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRQKGSVQGVEEIPKEVQELYKTVWEIKQK 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +++ A+ R +IDQ+QSLN+++ + KL ++ W +GLKT YYLR+++A + Sbjct: 695 KILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQ 754 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 TL + + T L + C C Sbjct: 755 FTLDAKKITME----SPLKPRTSPLKPQYVQEDEETCIAC 790 >gi|297821381|ref|XP_002878573.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis lyrata subsp. lyrata] gi|297324412|gb|EFH54832.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis lyrata subsp. lyrata] Length = 817 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 295/844 (34%), Positives = 448/844 (53%), Gaps = 64/844 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + +H Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFNH-----------VNDRS 109 Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G+K+ L+ + + D + L +++ Y+RDF ++Y G + L Y L + G+ +E PQ Sbjct: 110 GLKSPLIADDVFDIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQH 169 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRVA+G+ + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD Sbjct: 170 MLMRVAVGIH---KDDIDSAIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDD 226 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V Sbjct: 227 SIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286 Query: 439 NQGGKRK--GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG ++ GA YLE WH DV EFL+LRKN G + R D+ A W+PDLFM+RV N Sbjct: 287 DQGGGKRKEGAFAVYLEPWHADVFEFLELRKNHGKEEHRARDLFYALWVPDLFMERVQSN 346 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+LF P+E L D +G EFE Y YER E K + + A LW ++LT ET Sbjct: 347 GQWSLFCPNEAPGLADCWGAEFETLYTKYER-----EGKAKKVVQAQQLWYEILTSQVET 401 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----- 611 G P++ FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 402 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGV 461 Query: 612 ---------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 N FD+DKLA T L+ +ID+N + +E AK SN HR I Sbjct: 462 PLDSHPSKLAGSLGSKNRYFDFDKLAEVTATVTLNLNKIIDVNYYPVETAKTSNMRHRPI 521 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G+ G A LL +P+ SPEA ++ + E I +HA+ AS ELA G Y ++ GS Sbjct: 522 GIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAARVGPYETYSGSPV 581 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 +G+ D ++ R W L+ + G+RNS +A PTA+ + I Sbjct: 582 SKGILQPDMWNVIPSNR----------WDWAVLRDMISKNGVRNSLLVAPMPTASTSQIL 631 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G ++ +P N+Y + +SG+F VVN L+++L LW + + L +GSI N+ Sbjct: 632 GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAE 691 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG 896 IPDDLK I+ T +EI +++ A R +IDQ+QSLN+++D+P+ KL ++ AW G Sbjct: 692 IPDDLKAIYRTVWEIKQRTVVDMAVDRGCYIDQSQSLNIHMDKPNFAKLTSLHFYAWTKG 751 Query: 897 LKT-TYYLRSRSATSVEKSTLKGVDGKLNA------VPVTDPNSSTHSLGIPSSCTSDTE 949 LKT YYLRSR+A K T+ K V + ++ T + S T+ + Sbjct: 752 LKTGMYYLRSRAAADAIKFTVDTAMLKEKPSVAEGDKEVEEEDNETKLAQMVCSLTNPDD 811 Query: 950 CEVC 953 C C Sbjct: 812 CLAC 815 >gi|212528622|ref|XP_002144468.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium marneffei ATCC 18224] gi|210073866|gb|EEA27953.1| ribonucleotide reductase large subunit Rnr1, putative [Penicillium marneffei ATCC 18224] Length = 872 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 281/807 (34%), Positives = 433/807 (53%), Gaps = 33/807 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MYVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ ++ LY + + Sbjct: 61 AETAAYMTVTHPDYAVLAARIAVSNLHKQTKKQFSAV--------IEDLYHYVNPKNNKA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISGEMYETVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ E ++A+E YNL+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVAVGIHG---ENIEKAIETYNLMSQKYFTHASPTLFNAGTPRPQLASCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKSAGGIGLNVHRIRATGSYIGGTNGTSNGLVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFM+RV N WT Sbjct: 290 GNKRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E S L D+YG+EF+ YE YER E + R + A LW +L ETG+P+ Sbjct: 350 LFCPNEASGLADVYGEEFDALYEKYER-----EGRGRRTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI + +E AVCNL S+ L + +D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +IDIN + + +AKKSN HR I +G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS+ELA+E G Y +++GS QG+ D Sbjct: 525 AKQLNIQIFETIYHGALTASIELAKEHGTYETYEGSPVSQGILQYDMWERTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKAQISQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRSILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAYIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSC 944 K+ V N + + Sbjct: 755 QEQLKVEDTNVARANGISKKRSPAPAA 781 >gi|326469969|gb|EGD93978.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton tonsurans CBS 112818] gi|326484125|gb|EGE08135.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton equinum CBS 127.97] Length = 875 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 277/797 (34%), Positives = 427/797 (53%), Gaps = 33/797 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF ++Y G + L Y L NG E PQ M Sbjct: 113 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ E ++ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG+EFE YE YE+ E + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + +D+ Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E + A++AS ELA+ G YSS++GS QG+ D + Sbjct: 525 AKLLNTQIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSS 934 K+ V N++ Sbjct: 755 QEQLKVVDTNVARTNAA 771 >gi|121706584|ref|XP_001271554.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus clavatus NRRL 1] gi|119399702|gb|EAW10128.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus clavatus NRRL 1] Length = 859 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 281/806 (34%), Positives = 430/806 (53%), Gaps = 33/806 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNNNP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L I+G E PQ M Sbjct: 113 APMISKETYEIVMKHADELNSAIVYDRDFNYNYFGFKTLERSYLLRISGKVAERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + EK A+E Y+L+S +F ++PTLFN+GT PQL+SCFL + D + Sbjct: 173 RVAVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EF+ YE YE+ E + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFDALYERYEK-----EGRGRSTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L ++D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +IDIN + + +AKKSN HR I LG+ G A L +P+ SPE Sbjct: 465 GKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS ELA++ G Y +++GS QG+ D Sbjct: 525 ARQLNTQIFETIYHGALTASCELAKQLGPYETYEGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKAKIAQSGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ KL ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSS 943 K+ V N + ++ Sbjct: 755 QEQLKVADTNVARANPAFKKRAAGAT 780 >gi|114635717|ref|XP_001159515.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 1 [Pan troglodytes] Length = 779 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 288/802 (35%), Positives = 449/802 (55%), Gaps = 33/802 (4%) Query: 159 SKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNY 216 ++ +++ C GL V + + + +Y G++ +L+T ++ TL K P+Y Sbjct: 2 FDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDY 61 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 A + AR + L +E +K M+ LY + ++ Sbjct: 62 AILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLA 113 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ E Sbjct: 114 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDI 170 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K Sbjct: 171 DAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 230 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR GA YLE Sbjct: 231 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 290 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++ Sbjct: 291 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 350 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ Sbjct: 351 GEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 405 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLD 633 ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ Sbjct: 406 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 465 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + Sbjct: 466 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 525 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 526 ALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKI 575 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R Sbjct: 576 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 635 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSL Sbjct: 636 GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 695 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDP 931 N+++ EP+ KL ++ W GLKT YYLR+R A + + TL V + Sbjct: 696 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEE 755 Query: 932 NSSTHSLGIPSSCTSDTECEVC 953 ++ + S + EC +C Sbjct: 756 EKERNTAAMVCSLENRDECLMC 777 >gi|46121591|ref|XP_385350.1| hypothetical protein FG05174.1 [Gibberella zeae PH-1] Length = 913 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 283/825 (34%), Positives = 434/825 (52%), Gaps = 51/825 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA- 201 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVRKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTIQLDDLV 60 Query: 202 -----------------LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 ++ + P+YA + AR + L ++ +K Sbjct: 61 SGVCTMTVVTSANPILQAAETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQW 112 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 + LY + + L + + Y+RDF + Y G + L Sbjct: 113 SAVVSDLYHWVNPKNDRASPMISKETYECVMRHKEELDSAIVYDRDFNYNYFGFRTLSRS 172 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 Y L I+G E PQ MRVA+G+ + E+ +E YNL+SS F ++PTLFN+GT Sbjct: 173 YLLQIDGKIAERPQHMIMRVAVGIWGDDIERV---LETYNLMSSKFFTHASPTLFNAGTP 229 Query: 365 HPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSCFL + D + GI+ L+ AM++K +GG+G + +R G++I GTNG S G Sbjct: 230 QPQLSSCFLVDMKEDSIDGIYDTLKTCAMISKMAGGIGLNAHRIRATGSYIAGTNGTSNG 289 Query: 424 VIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 ++P L+V N+TA V+QG KR GA YLE WH DV EFLDLRKN G + R D+ A Sbjct: 290 IVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLA 349 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 WIPDLFMKRV +N WTL P+E L D YG EFE YE YER E K + I A Sbjct: 350 LWIPDLFMKRVERNGEWTLMCPNECPGLADCYGDEFEALYEKYER-----EGKGRKSIKA 404 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 LW +L ETG+P++ +KD CN +S Q+++G + SSNLCTEI + +E AVCNL Sbjct: 405 QKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNL 464 Query: 603 GSINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 S++L + + + +D+ KL + VR L+ +ID+N + +++A+ SN HR IGLG+ Sbjct: 465 ASLSLPSFINYEDACYDFKKLHEVTQVVVRNLNKIIDVNHYPVQEARNSNMRHRPIGLGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A L +P+ SPEA E+ + E I A++ SV+LA+E G YS+FKGS +G+ Sbjct: 525 QGLADAFLALRMPFESPEARELNKQIFETIYHAALTTSVQLAKEEGPYSTFKGSPASEGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D + + W+ L++ VKT G+RNS +A PTA+ + I G ++ Sbjct: 585 LQFDMWN----------VKPSDLWDWEPLREDVKTHGIRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + ++G+F VVN +L+ +L LW +AM + + +GSI NI IP + Sbjct: 635 CFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIADNGSIQNIPNIPAE 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 +K ++ T +EI +++ A+ R +IDQ+QSLN+++ +P+ K+ ++ W +GLKT Sbjct: 695 IKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 YYLR+++A + + T+ + K+ S Sbjct: 755 MYYLRTQAAAAPIQFTVDQENLKIADSNSASIKPLGKRAPPAGSS 799 >gi|89890042|ref|ZP_01201553.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria bacterium BBFL7] gi|89518315|gb|EAS20971.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria bacterium BBFL7] Length = 828 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 289/849 (34%), Positives = 447/849 (52%), Gaps = 63/849 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG ++ V + C GL + V V +YDG++ S+L+ Sbjct: 1 MFVVKRDGHKEPVMFDKITARVRKLCYGLSNHVDPVKVAMRVIDGLYDGVTTSELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ T+ P+YA++ AR + L + T LY R ++ Sbjct: 61 ETAATMTTAHPDYARLAARISVSNLHKNTKKTFTDVVT--------DLYEYVNPRTEKKA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y RDF ++Y G + L Y L ING E PQ MR Sbjct: 113 PMISDEVYQVIQDNADRLNSAIIYNRDFGYDYFGFKTLERSYLLKINGKIAERPQHMLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 V++G+ + + A+E Y L+S F +TPTLFN+GT PQ+SSCFL T+ DD + G Sbjct: 173 VSVGIHMDD---LDAAIETYELMSKKFFTHATPTLFNAGTPKPQMSSCFLLTMQDDSIEG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ L++ A +++ +GG+G +R G++I GTNG S G++P LKV NDTA V+QGG Sbjct: 230 IYDTLKQTAKISQSAGGIGLSIHNIRARGSYIGGTNGTSNGIVPMLKVYNDTARYVDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ +FLDL+KN G + R D+ A W+ DLFMKRV N WTL Sbjct: 290 GKRKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E DL+++YG EFE Y YE+ E K + I A LW K+L ETG P++ Sbjct: 350 MCPHECPDLYNVYGDEFEALYTKYEQ-----EGKGRKTIQARELWDKILESQIETGTPYM 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD N +S Q+++G + SSNLCTEI +S +E AVCNL SI L + FD+ L Sbjct: 405 LYKDAANNKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKDGAFDHKAL 464 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + R L+ VID N + + +A+ SN HR +GLG+ G A +L +P+ S EA + Sbjct: 465 YKVTKRVTRNLNKVIDRNYYPVIEARNSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKK 524 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + F A AS+E+AQE GAYS+F+GS QG F + + + + Sbjct: 525 LNSEIFETLYFAACEASMEMAQEEGAYSTFEGSPMSQGEFQFNMWNIN-------DSDLS 577 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W +L+ +V G+RNS +A PTA+ + I G +++ +P N+Y + +SG+F V Sbjct: 578 GRWNWSDLRTKVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIV 637 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN L+ +L LWD+++ + + ++GSI IE IP+D+K+++ T +E+ +I+ + Sbjct: 638 VNKHLLKDLVDLGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSR 697 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 +R +IDQ+QSLNL+++ + KL ++ AW GLKT YYLR+++A K T+ Sbjct: 698 QRGYFIDQSQSLNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTVTKEA 757 Query: 921 GKL------------------------------------NAVPVTDPNSSTHSLGIPSSC 944 K + +T L + Sbjct: 758 KKAPVAQPAVAPVLIEDHSPAAAKVMEAAADIINTKVVTESEEMTAAEYKEILLRAKEAA 817 Query: 945 TSDTECEVC 953 ++ +CE+C Sbjct: 818 SNGDDCEMC 826 >gi|321259241|ref|XP_003194341.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus gattii WM276] gi|317460812|gb|ADV22554.1| ribonucleoside-diphosphate reductase large chain, putative [Cryptococcus gattii WM276] Length = 863 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 289/807 (35%), Positives = 424/807 (52%), Gaps = 33/807 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 + I DG ++ + + GL V + + + ++ G++ +L+ Sbjct: 2 VMWIYKRDGRKEPVAFDKVTARINKLSYGLDPNFVEPAEITQKVVQGIHAGITTVELDNL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ L K P+YA + AR + L +E +K + L+ + + Sbjct: 62 AAETAAYLTTKHPDYAILAARIAISNLHKET--------KKVFSAVVHDLHAWVNPKTGK 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ + L + + Y+RDFA+ Y G + L Y L ING +E PQ Sbjct: 114 HSPMIDDEVYKVVMDNKDILDSAIIYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMI 173 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + +E YNL+S +F ++PTLFN+GT PQ+SSCFL + DD + Sbjct: 174 MRVAVGIHGA---NIDKVIETYNLMSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSI 230 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ A ++K +GG+G +R G++I GTNG S G+IP L+ + TA V+Q Sbjct: 231 DGIYDTLKTCAQISKTAGGIGLHIHNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQ 290 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA YLE WH DV +F+DLRKN G + R D+ A WIPDLFMKRV + W Sbjct: 291 GGNKRPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDW 350 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TL P E L D+YG+EFE YE+YERQ K + I A LW +L ETG P Sbjct: 351 TLMCPAECPGLADVYGEEFEKLYESYERQ-----GKGRKTIKAQKLWFAILEAQTETGVP 405 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617 +I +KD N +S Q+H+G + SSNLCTEI SS +E AVCNL S+ L A +D Sbjct: 406 YICYKDAANSKSNQKHLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYD 465 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + KL + + LD VI N + + +A+ SN HR +GLG+ G A L +P+ S Sbjct: 466 FKKLHEITKVVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSL 525 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA E+ + E I A+ AS ELA+E+G Y S++GS +G+ D G + Sbjct: 526 EARELNIQIFETIYHAALEASCELAEEQGTYESYEGSPLSKGILQYDMWGRVP------- 578 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T W ELK ++ G+RNS +A PTA+ + I G ++ +P LY + +SG Sbjct: 579 ---TDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSG 635 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 DF VV +L+ +L DLWD+ M + GSI +I IPDDLKKI+ T +EI +I Sbjct: 636 DFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVI 695 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +IDQ+QSLN++L PS +L ++ W GLKT YYLR+R + + + T+ Sbjct: 696 DLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTI 755 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSS 943 K + S P + Sbjct: 756 DASTLKTAKNLSSSAKPSPTPSPAPGA 782 >gi|224082486|ref|XP_002306711.1| predicted protein [Populus trichocarpa] gi|222856160|gb|EEE93707.1| predicted protein [Populus trichocarpa] Length = 810 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 280/834 (33%), Positives = 441/834 (52%), Gaps = 51/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ GL +V + +Y G++ + L+ Sbjct: 1 MYVIKRDGRQEPVRFDKITARLKKLSYGLSNDHCDPVLVAQKVCAGVYRGVTTTQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ P+YA + AR + +L + +K+ ++ +Y ++ Sbjct: 61 AETAASMTANHPDYALLAARISVSRLHKNT--------KKSFSETIELMYNNLNKGSGQK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L ++G +E PQ M Sbjct: 113 APLIADDVYEIIMKNAERLDSEILYDRDFEYDYFGFKTLERSYLLKVDGKIVERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + + A + Y+L+S F +TPTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIESATKTYHLMSQSWFTHATPTLFNAGTAQPQLSSCFLLCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G + G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKECAVISKLAGGIGIAVHNIHATGSYIRGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A WIPDLFM+RV + W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFLALWIPDLFMERVRGDDKWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G+EFE Y YER E + + ISA LW ++L ETG P+ Sbjct: 350 LFCPSEAPGLADCWGQEFEKLYTQYER-----EDRAKKIISARKLWFEILNSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTE+ +S ETAVCNL S+ L Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASVALPRFVMERGVPAES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD++KLA T L+ +ID+N + +E A++SN HR IG+G+ Sbjct: 465 QSSKMVGSRESKNRYFDFEKLAEVTTTITANLNKIIDVNYYPVETARRSNLRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ S EA + + E I +HA+ +S ELA + G Y ++ GS +G+ Sbjct: 525 QGLADTFILLGMPFDSSEAKRLNKDIFETIYYHALRSSSELAAKDGPYETYCGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +D G+ R WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQMDMWGVTPSDR----------WDWDALREMISKSGVRNSLLIAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F V+N L+N+L + LW + + + GS+ I IP+ Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVMNKHLLNDLTEMGLWSPVLKNKIINESGSVSKIPEIPEQ 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A+ R +IDQ+QSLN+++++P KL ++ AW GLKT Sbjct: 695 LKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDLGKLTSLHFHAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ + + ++ S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTTVLNNENANKAEDDVNSDMAQAACSLQNREECMAC 808 >gi|299743194|ref|XP_001835601.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130] gi|298405544|gb|EAU86172.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130] Length = 895 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 274/782 (35%), Positives = 416/782 (53%), Gaps = 31/782 (3%) Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 ++ + + C GL V V + +Y G++ +L+ ++ L Sbjct: 34 RKERVQFDKITARISKLCYGLDLNFVDPIEVAQKVVVGVYQGVTTVELDNLAAETAAYLT 93 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 K P+YA + AR + L +E + + M+ LY + + Sbjct: 94 TKHPDYAVLAARIAVSNLHKETKKSFSQV--------MKDLYEYVNPKNGKPAGMISKET 145 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 ++ + L + + Y RDF + Y G + L Y L +NG E PQ MRVA+G+ Sbjct: 146 WEVIRDNADTLDSAIIYNRDFNYNYFGFKTLERSYLLRLNGRVAERPQHMIMRVAVGIHG 205 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQE 389 ++ ++ +E YNL+S +F ++PTLFN+GT HPQLSSCFL + DD + GI+ L+ Sbjct: 206 RDIDRV---LETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGIYDTLKN 262 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAV 448 AM++K +GG+G + +R G++I GTNG S G++P L+ + TA V+QG KR GA Sbjct: 263 CAMISKTAGGIGLNIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGNKRPGAF 322 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 Y+E WH DV EFLDLRKN G + R D+ A WIPDLFMKRV + W+LF P+E Sbjct: 323 AIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEADGEWSLFCPNEAP 382 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 LHD++ EFE YE YE+ E + + I A LW +L ETG P++ +KD N Sbjct: 383 GLHDVHSAEFEELYERYEK-----EGRARKTIRAQKLWYAILEAQIETGGPFMVYKDHAN 437 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +S Q+++G + SSNLCTEI SS +ETAVCNL S+ L + +D+ KL + Sbjct: 438 AKSNQKNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIKDGVYDFKKLHEVTKVV 497 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L+ +ID+N + I +A++SN HR IG+G+ G A L +P+ S A E+ + E Sbjct: 498 TYNLNRIIDVNYYPIPEARRSNMRHRPIGIGVQGLADAFMALRMPFDSQAAKELNLQIFE 557 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A+ AS E+A G Y +++GS QG D G + + W Sbjct: 558 TIYHAALEASSEIAARDGPYETWEGSPASQGQLQYDLWG----------VKPSDLWDWAS 607 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VV +L+ Sbjct: 608 LKAQIAKTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLR 667 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 EL LWD+ M + + H+GS+ NI IP D+K I+ T +EI +I+ A+ R +I Sbjct: 668 ELVDLGLWDDNMKNLIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVIDLAADRGAFIC 727 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927 Q+QSLN++L P+ +L ++ W GLKT YYLR+R A + T+ K Sbjct: 728 QSQSLNVHLSAPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSLLKAAKEQ 787 Query: 928 VT 929 Sbjct: 788 TQ 789 >gi|302418985|ref|XP_003007323.1| ribonucleoside-diphosphate reductase large chain [Verticillium albo-atrum VaMs.102] gi|261352974|gb|EEY15402.1| ribonucleoside-diphosphate reductase large chain [Verticillium albo-atrum VaMs.102] Length = 903 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 284/805 (35%), Positives = 432/805 (53%), Gaps = 33/805 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVRKRDGRQERVQFDKITARVSRLCYGLDMDHVDPVAITQKVISGVYGGVTTVQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQWSSVVSDLYHYVNPKNNRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMIAPETYEFVMKHKEELDSAIVYDRDFNYQYFGFKTLERSYLLKLDGKIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E+ +E YNL+SS F ++PTLFN+GT QLSSCFL + DD + Sbjct: 173 RVSVGIWGDNVERV---IETYNLMSSKFFTHASPTLFNAGTPQAQLSSCFLVDMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G+ P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNVHRIRATGSYIAGTNGTSNGITPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D YG EFE YE YE+ K + I A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADCYGDEFEALYEKYEKA-----GKGRKTIKAQKLWYAVLEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L A+ N +D+ Sbjct: 405 MLYKDHCNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAYVDYNNGVYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +ID+N + + +A+ SN HR IGLG+ G A L +P+ SPE Sbjct: 465 KKLHQVTQVVVRNLNRIIDVNHYPVIEARNSNMRHRPIGLGVQGLADAFLALRMPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A E+ + E I A++ S +LAQE G YS+++GS QG+ D + Sbjct: 525 AKELNKQIFETIYHAALTMSCKLAQEEGPYSTYEGSPVSQGILQYDMWN----------V 574 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W +LK ++K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 575 KPTDLWDWADLKSQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW ++M + + +GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWEISQRTVVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ +P+ K+ ++ W +GLKT YYLR+++A + + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942 K+ V S +PS Sbjct: 755 KEALKVADTNVGKERSLKKRSPMPS 779 >gi|103488896|gb|ABF71875.1| ribonucleotide reductase large subunit [Neurospora crassa] Length = 923 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 278/805 (34%), Positives = 428/805 (53%), Gaps = 33/805 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ + L+ Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY R + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLV--------ISELYNYVNPRTGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVAVGIWGDDVERV---IETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV E LDLRKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFESLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D+YG EFE YE YE+ E K + + A LW +L ETG+P+ Sbjct: 350 LMCPHECPGLADVYGDEFEALYEKYEK-----EGKGRKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVC L S+ L A +D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCYLASLALSAFIDYENASYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + VR L+ +IDIN + +++A SN HR IG+G+ G A L +P+ S Sbjct: 465 KKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDA 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS +LA+E+G Y++++GS QG+ D + Sbjct: 525 ASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T+ W LK +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L + LW +AM + + GSI NI+ IP+D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVK 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W MGLKT YYLR+++A + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS 942 + V +S P+ Sbjct: 755 QEALRATDDRVAPAHSGLKKRSPPA 779 >gi|223999029|ref|XP_002289187.1| ribonucleotide reductase large chain subunit [Thalassiosira pseudonana CCMP1335] gi|220974395|gb|EED92724.1| ribonucleotide reductase large chain subunit [Thalassiosira pseudonana CCMP1335] Length = 813 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 280/837 (33%), Positives = 441/837 (52%), Gaps = 54/837 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S +++ + + C GL V+ ++ + + +Y G++ ++L+ Sbjct: 1 MYVVKRDGKKQSCQFDKIQSRISKLCYGLDQKFVNEAVISQKVIQGVYPGVTTTELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + + P+YA + AR + L +E K + Y + E Sbjct: 61 AQTAASFSTQHPDYAVLAARIEVSNLHKETEKQFSKVVE--------AFYNYTHPKTGEP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + ++RDF F+Y G + L Y L ++G E PQ M Sbjct: 113 APLVSKEVYDVVNANKDVLDGAVIHDRDFEFDYFGYKTLEKSYLLKLHGEIAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RV++G+ + + E+ +E YNLLS F +TPTLFN+GT +PQ+SSCFLT + D + Sbjct: 173 RVSVGIHMGDIERV---LETYNLLSQRFFTHATPTLFNAGTPNPQMSSCFLTCIKADSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++KY+GG+G + VR ++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKNCAVISKYAGGIGMSISNVRASASYIRGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG++ AY+E WH D+ FLDLRKN G++ R D+ A WIPDLFM+RV QN WT Sbjct: 290 GGKRKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +G+EF+ YE YER E K + I A LW +L ETG P+ Sbjct: 350 LMCPNECPGLDTCWGEEFKTLYEKYER-----EGKGRKTIKAQQLWFAVLDSQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN------- 613 + +KD CN +S QQ++G + SNLCTEI ++ +E AVCNL SI+L Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTAPDEIAVCNLASISLSKFVTPADNFGGE 464 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 FD + L + + L+ VID N + +E+A++SN HR IG+G+ G A ++ +P Sbjct: 465 GHFDLENLKHISKVVTKNLNRVIDRNFYPVEEARRSNMRHRPIGIGVQGLADAFMMMKLP 524 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + SPEA ++ + E I F A AS+ELA++ G Y +++GS +G D G+ Sbjct: 525 FESPEARQLNKDIFETIYFGACEASMELAEQEGPYETYEGSPASKGQLQFDMWGVEP--- 581 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 ++ W LK ++ GMRNS MA PTA+ A I G ++S +P N+Y + Sbjct: 582 -------SNLWDWAGLKAKIAQHGMRNSLLMAPMPTASTAQILGNNESTEPFTSNMYNRR 634 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 ++G+FT+VN L+ EL LW E + + + GS+ + IP ++ ++ T +EI Sbjct: 635 VLAGEFTIVNKHLLRELTANGLWTERVRNQIIAQGGSVQAVADIPKSIRDVYKTVWEIPQ 694 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +++ A+ R +I Q+QS+N+++ EPS KL ++ AW GLKT YYLR+R Sbjct: 695 RAILDMAADRGAFICQSQSMNVHIGEPSTSKLTSMHFYAWKKGLKTGMYYLRTRPKADAI 754 Query: 913 KSTLK-----GVDGKLNAVPVTDPNSSTHSLGIPSSC-----------TSDTECEVC 953 + T+ K + S T + EC C Sbjct: 755 QFTVNQEMLAESTSKPAQDQLERNPSPTSVTAAGKVSVNSKFAGLQMKDEEEECLNC 811 >gi|151944785|gb|EDN63044.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces cerevisiae YJM789] gi|190405633|gb|EDV08900.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|259145984|emb|CAY79244.1| Rnr1p [Saccharomyces cerevisiae EC1118] gi|323333854|gb|EGA75244.1| Rnr1p [Saccharomyces cerevisiae AWRI796] gi|323348888|gb|EGA83125.1| Rnr1p [Saccharomyces cerevisiae Lalvin QA23] gi|323355271|gb|EGA87096.1| Rnr1p [Saccharomyces cerevisiae VL3] Length = 888 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 281/812 (34%), Positives = 425/812 (52%), Gaps = 38/812 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + C GL + + V +Y+G++ +L+ Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ K + LY + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ E A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVALGIHGRDIE---AALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP L D YG EFE Y YE++ + I A LW +L ETG P+ Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN +S Q+++GV+ SSNLC EI S+ +ETAVCNL S+ L A + Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++ KL + R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I ++ AS ELAQ+ G Y +F+GS QG+ D Sbjct: 524 DSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 WD L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 580 ------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN +L+ +L +WDE M L +GSI + +P +LK ++ T +EI Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I A+ R +IDQ+ SLNL+L P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 T+ V D ++ +PSS + Sbjct: 754 FTIDQKIADQATENVADISNLKRPSYMPSSAS 785 >gi|323449664|gb|EGB05550.1| hypothetical protein AURANDRAFT_30730 [Aureococcus anophagefferens] Length = 787 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 276/818 (33%), Positives = 430/818 (52%), Gaps = 42/818 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 ++++ +G + ++ +++ C GL + + + + +YDG++ +L+ Sbjct: 1 MQVVKRNGKKETVRYDKITSRIKKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + + P+++ + AR + L + T +K L+ + + Sbjct: 61 AQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEK--------LHKHVHPKTKKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + + Y+RDF ++Y G + L Y + ++G+ E PQ M Sbjct: 113 AALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + A+E Y ++S F +TPTLFN+GT PQLSSCFL + D + Sbjct: 173 RVALGIHGDD---LAGALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYIRGSNGTSNGIVPMLRVYNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV N W+ Sbjct: 290 GGKRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGSWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D +G EFE YE YE E + + I A LW +L ETG P+ Sbjct: 350 LMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWFAILDSQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616 + +KD CN +S Q+H+G + SSNLCTEI ++ +E AVCNL SINL AH + F Sbjct: 405 MLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLTAHVEGSGDAATF 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL T + L+ VID+N + +E+AK SN HR IG+G+ G AL L PY S Sbjct: 465 DFAKLKRTAYVVTKNLNKVIDVNYYPVEEAKSSNLKHRPIGIGVQGMADALVKLRYPYES 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A I + E I F A+ AS++LA+E G Y S++GS QG+F D Sbjct: 525 DDAKRINKDVFETIYFGAMEASIDLARELGPYDSYEGSPTSQGLFQFDLWN--------- 575 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + + R W+ L+ R+ G RNS +A PTA+ A I G ++S +P N+Y + ++ Sbjct: 576 -VKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L R LW + + + GS+ + IPDDLK ++ T +EI + Sbjct: 635 GEFAVVNKYLLQDLIARGLWTSEIRNQIIADKGSVQGVAAIPDDLKALYKTTWEIKQKCV 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 ++ ++ R +I Q+QSLNL++ +P+ KL ++ AW GLKT YYLR+R T Sbjct: 695 LDMSADRGAFICQSQSLNLHIADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFT 754 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + EC C Sbjct: 755 VDQ-------AMAAKSRGGAALKPANGQQEEEHECLSC 785 >gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae] gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae] Length = 812 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 298/835 (35%), Positives = 436/835 (52%), Gaps = 42/835 (5%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192 K+ + KL ++ DG + ++ +++ C L V + + +Y G Sbjct: 2 LKNKTLKSSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCG 61 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+ S L +YA + AR + L +E +K + LY Sbjct: 62 VTTQELDNLAAEISAGLTCNHADYAILAARIAVSNLHKET--------RKVFSDVFEALY 113 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 H +++ + L + + Y+RDF + Y G + L Y L ING Sbjct: 114 THVNKETNLRAPLVSEFHYNVVKKNADRLNSSIIYDRDFGYNYFGFKTLERSYLLKINGK 173 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ MRVA+G+ E AVE YNLLS +F ++PTLF + T PQLSSCF Sbjct: 174 VAERPQHMLMRVAIGIHG---EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCF 230 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ D + GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V Sbjct: 231 LLTMTADSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVF 290 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+ A V+QGG KR GA YLE WH DV EFLDL+KNTG + R D+ A WIPDLFM Sbjct: 291 NNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFM 350 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV N W+L P + LHD++G EFE Y YE+ E + R + A +LW ++ Sbjct: 351 KRVEANEDWSLMCPHKCPGLHDVWGDEFEKLYVKYEQ-----EGRANRTVKAQSLWFAII 405 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG+P++ FKD CN +S QQ+VG + SNLCTEI SS +E AVCNL SI L Sbjct: 406 ESQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMF 465 Query: 611 FAN-NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +D+ KL +T R L+ +IDIN + + +AKKSN HR IG+G+ G AL L Sbjct: 466 VTPEKTYDFKKLKEVTKTVARNLNKIIDINFYPLPEAKKSNMRHRPIGIGVQGLADALIL 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + PY S EA + + E I F A+ AS ELAQ+ G Y +++GS +G+ D Sbjct: 526 MRYPYESEEASLLNQQIFETIYFGALEASCELAQKDGTYETYEGSPVSKGILQYDMWDKT 585 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T W LK+ +K G+RNS +A PTA+ A I G ++S +P N+ Sbjct: 586 P----------TGLWDWKSLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNI 635 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE IP ++ ++ T + Sbjct: 636 YTRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIESIPQKVRDLYKTVW 695 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A Sbjct: 696 EISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPA 755 Query: 909 TSVEKSTLKG----------VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + T+ K + + + + S + C C Sbjct: 756 ANAIQFTVDKKMSALKINGQNGVKEESAQDYESDRERKMADMVCSLENKDACMSC 810 >gi|6320914|ref|NP_010993.1| Rnr1p [Saccharomyces cerevisiae S288c] gi|730514|sp|P21524|RIR1_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 1; AltName: Full=Ribonucleotide reductase R1 subunit 1; AltName: Full=Ribonucleotide reductase large subunit 1 gi|93278634|pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I gi|93278635|pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I gi|93278636|pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279171|pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279172|pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279173|pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279174|pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279175|pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279176|pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279177|pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I gi|93279277|pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed With Ligands And Subunit Peptides gi|197107210|pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of Eukaryotic Ribonucleotide Reductase gi|197107212|pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of Eukaryotic Ribonucleotide Reductase gi|290560304|pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed With Designed Adp Analog Compound gi|323714514|pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|323714515|pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|323714516|pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|323714517|pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With Datp Bound In The A-Site gi|603306|gb|AAB64606.1| Rnr1p: Ribonucleotide reductase [Saccharomyces cerevisiae] gi|256271462|gb|EEU06516.1| Rnr1p [Saccharomyces cerevisiae JAY291] gi|285811701|tpg|DAA07729.1| TPA: Rnr1p [Saccharomyces cerevisiae S288c] Length = 888 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 281/812 (34%), Positives = 425/812 (52%), Gaps = 38/812 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + C GL + + V +Y+G++ +L+ Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ K + LY + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ E A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVALGIHGRDIE---AALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP L D YG EFE Y YE++ + I A LW +L ETG P+ Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN +S Q+++GV+ SSNLC EI S+ +ETAVCNL S+ L A + Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++ KL + R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I ++ AS ELAQ+ G Y +F+GS QG+ D Sbjct: 524 DSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 WD L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 580 ------YGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN +L+ +L +WDE M L +GSI + +P +LK ++ T +EI Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I A+ R +IDQ+ SLNL+L P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 T+ V D ++ +PSS + Sbjct: 754 FTIDQKIADQATENVADISNLKRPSYMPSSAS 785 >gi|323305248|gb|EGA58995.1| Rnr1p [Saccharomyces cerevisiae FostersB] Length = 888 Score = 690 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 280/812 (34%), Positives = 423/812 (52%), Gaps = 38/812 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + C GL + + V +Y+G++ +L+ Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ K + LY + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVALGIHG---XDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP L D YG EFE Y YE++ + I A LW +L ETG P+ Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN +S Q+++GV+ SSNLC EI S+ +ETAVCNL S+ L A + Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++ KL + R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I ++ AS ELAQ+ G Y +F+GS QG+ D Sbjct: 524 DSEEARLLNIQIFETIYXASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 WD L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 580 ------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN +L+ +L +WDE M L +GSI + +P +LK ++ T +EI Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I A+ R +IDQ+ SLNL+L P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 T+ V D ++ +PSS + Sbjct: 754 FTIDQKIADQATENVADISNLKRPSYMPSSAS 785 >gi|28422346|gb|AAH46846.1| RRM1 protein [Xenopus laevis] Length = 760 Score = 690 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 279/779 (35%), Positives = 436/779 (55%), Gaps = 32/779 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL + V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNLEFVDPAQITMKVIQGLYSGVTTIELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARVAVSNLHKET--------KKIFSDVMEDLYNYVNPLNSKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ + G + L Y L ING E PQ M Sbjct: 113 SPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KTDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +FLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L +++G +FE YE YER E + + + A +W ++ ETG P+ Sbjct: 350 LMCPHECPGLEEVWGDKFEELYEKYER-----EGRTRKVVKAQQVWHAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + FD+ Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTPERSFDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +I+IN + + +A+ SN HR IG+G+ G A L+ P+ S +A Sbjct: 465 KLADVTKVIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ +S ELA+E G Y +++G +G+ D + Sbjct: 525 QMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 576 -TDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L ++ LW+E M + + ++GSI N+ IP DLK+++ T +EI +I Sbjct: 635 QIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 695 AADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 753 >gi|254580061|ref|XP_002496016.1| ZYRO0C08514p [Zygosaccharomyces rouxii] gi|238938907|emb|CAR27083.1| ZYRO0C08514p [Zygosaccharomyces rouxii] Length = 921 Score = 690 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 275/815 (33%), Positives = 429/815 (52%), Gaps = 37/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + + C GL + + + +Y+G++ +L+ Sbjct: 1 MFVYKRDGRKEPVRFDKITARISKLCYGLDPSHIDAVKITQRIISGVYEGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ + + LY Sbjct: 61 AETCAYMTTVHPDYATLAARIAVSNLHKQTTKQFSQV--------ISDLYHYVNPANGVH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF F Y G + L Y L ING E PQ M Sbjct: 113 SPMISDEIFNIVMTNKDELNSAIVYDRDFQFNYFGFKTLERSYLLRINGLTAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E K A+E YNL+S +F+ ++PTLFN+GT HPQ++SCFL + DD + Sbjct: 173 RVSLGIHG---EDIKSAIETYNLMSLRYFIHASPTLFNAGTPHPQMASCFLVAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ +L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDSLKECAMISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNEEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L D+YG+EFE YE YE+ E + + I A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLADVYGEEFEKLYERYEQ-----EGRGRKTIRAQKLWYAILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN +S Q+++GV+ SSNLC EI S +ETA CNL SI L + Sbjct: 405 MLYKDACNEKSNQKNLGVIKSSNLCCEIVEYSDKDETAACNLASIALPSCVEVSADGKEQ 464 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 + + KL + R L+ VID N + + +AK+SN HR I LG+ G +L +P+ Sbjct: 465 WYSFAKLHEVAKAITRNLNKVIDRNYYPVPEAKRSNMRHRPIALGVNGLADTFMMLRLPF 524 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPEA + + E I A+ S ELA+ G YS+++GS QG+ D Sbjct: 525 ESPEAKILNQQIFETIYHGALEQSCELAKIHGTYSTYEGSPISQGLLQFDLW-------- 576 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 N + W+ L++ +K G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 577 --EKNPSELWDWEPLRQGIKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F +VN +L+ +L +WDE+M + +GSI NI IP ++K ++ T +EI Sbjct: 635 LSGEFQIVNPYLLKDLVDLGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWEISQR 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +++ A+ R +IDQ+ SLN+++ P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 695 HVLDMAADRAVFIDQSHSLNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 T+ +T +P Sbjct: 755 FTIDKNVAAQAGRNITTLPELPRPKYVPRGVNMVE 789 >gi|119188101|ref|XP_001244657.1| hypothetical protein CIMG_04098 [Coccidioides immitis RS] Length = 893 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 277/796 (34%), Positives = 428/796 (53%), Gaps = 33/796 (4%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ V C GL V + + + +Y G++ +L+ ++ Sbjct: 23 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTIELDNLAAETAAY 82 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + P+YA + AR + L ++ + LY + Sbjct: 83 MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYINPKNNRPAPMISQ 134 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 ++ L + + Y+RDF ++Y G + L Y L ING E PQ MRVA+G+ Sbjct: 135 KTYEIVMKHSAELNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGI 194 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387 ++ EK A+E YNL+S F ++PTLFN+GT PQ++SCFL + D + GI+ L Sbjct: 195 HGEDIEK---AIETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 251 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG KR G Sbjct: 252 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPG 311 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E Sbjct: 312 AFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 371 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D+YG EFE YE YE+ E + + I A LW +L ETG+P++ +KD Sbjct: 372 APGLADVYGDEFEALYEQYEK-----EGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDA 426 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624 CN +S Q+++G + SSNLCTEI +S +E AVCNL S+ L + + +D+ KL Sbjct: 427 CNRKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEV 486 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR L+ +ID N + + +A+KSN HR I +G+ G A L +P+ SPEA ++ Sbjct: 487 TQVLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNI 546 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E I A++AS ++A+ G Y +++GS QG+ D + T Sbjct: 547 QIFETIYHAALTASCDIAKVDGPYETYEGSPVSQGILQYDMWNVTP----------TDLW 596 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN Sbjct: 597 DWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 656 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R Sbjct: 657 WLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 716 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ K+ Sbjct: 717 AYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 776 Query: 924 NAVPVTDPNSSTHSLG 939 V + G Sbjct: 777 ADTNVARSSVVGKKRG 792 >gi|330929115|ref|XP_003302526.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1] gi|311322081|gb|EFQ89385.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1] Length = 889 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 273/816 (33%), Positives = 431/816 (52%), Gaps = 35/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVVE--------DLYTYVNPKNGKS 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF +++ G + L Y L ING E PQ M Sbjct: 113 QPMISDHVYKIIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ K A+E Y+ +S +F ++PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVAVGIHGEDIPK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV FLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D+YG EFE YE+YE+Q K + A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEKQN-----KGRETVRAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L + +FD+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + R L+ +I++N + +E+A++SN HR IG+G+ G A L +P+ S E Sbjct: 465 QKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A+++S ++A+E G Y +++GS QG+ D + Sbjct: 525 AKKLNIQIFETIYHAALTSSCDIAKELGPYQTYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW E M + + GSI I IP++ K ++ T +EI +I+ Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAV--PVTDPNSSTHSLGIPSSCTSDTECE 951 K+ P +P + S E E Sbjct: 755 QEQLKVADTNIAKALPKIRKQPGFVPEAVRSAPESE 790 >gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group] Length = 814 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 289/838 (34%), Positives = 447/838 (53%), Gaps = 55/838 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + +K+ ++ +Y + R Sbjct: 61 AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNERSGLN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 113 APLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EFE Y YER E K + + A LW +L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYTKYER-----EGKAKKIVPAQTLWFDILKAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA T L+ +IDIN + +E AK+SN HR IG+G+ Sbjct: 465 HPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ SPEA ++ + E I FH++ AS ELA + G Y +++GS +G+ Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W L+ + +G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVVPSDR----------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + +W A+ + + + DGS+ + IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIFEDGSVQKMTEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++++P+ KL ++ AW GLKT Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K N + + + S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812 >gi|115398293|ref|XP_001214738.1| ribonucleoside-diphosphate reductase large chain [Aspergillus terreus NIH2624] gi|114192929|gb|EAU34629.1| ribonucleoside-diphosphate reductase large chain [Aspergillus terreus NIH2624] Length = 886 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 278/806 (34%), Positives = 430/806 (53%), Gaps = 33/806 (4%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204 + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 25 VFPADGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAE 84 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + P+YA + AR + L ++ H+ R + Sbjct: 85 TAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLFHY--------VNPRNNKPAP 136 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + L + + Y+RDF + + G + L Y L ING E PQ MRV Sbjct: 137 MISKETYETVMKHADELNSAIVYDRDFNYNFFGFKTLERSYLLRINGKVAERPQHLLMRV 196 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGI 383 A+G+ + EK A+E Y+L+S +F ++PTLF++GT PQL+SCFL + D + GI Sbjct: 197 AVGIHGNDIEK---AIETYHLMSQKYFTHASPTLFSAGTPQPQLASCFLVDMKEDSIEGI 253 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442 + L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 254 YDTLKTCAMISKNAGGIGLNVHRIRSTGSYIGGTNGTSNGLVPMLRVFNNTARYVDQGGN 313 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF Sbjct: 314 KRPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLF 373 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P+E L D+YG EF+ YE YE+ E + R + A LW +L ETG+P++ Sbjct: 374 CPNEAPGLADVYGDEFDALYEKYEK-----EGRGRRTVKAQKLWYAILEAQTETGNPFML 428 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDK 620 +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L + +D+ K Sbjct: 429 YKDACNRKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTFVDATRGEYDFGK 488 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + + +A+KSN HR I LG+ G A L +P+ SPEA Sbjct: 489 LHEVVQVLVRNLNKIIDINYYPVPEARKSNMRHRPIALGVNGLADAFLALRLPFDSPEAK 548 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I A++AS +LA+E G Y +++GS QG+ D Sbjct: 549 QLNIQIFETIYHGALTASSDLAKELGPYETYEGSPVSQGILQYDMWDRTP---------- 598 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F Sbjct: 599 TDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQ 658 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ A Sbjct: 659 VVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRTILQMA 718 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QSLN++L EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 719 ADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQE 778 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCT 945 K+ V +++ + + Sbjct: 779 QLKVADTNVARVSAAYKKRTGAPASS 804 >gi|328864042|gb|EGG13141.1| hypothetical protein MELLADRAFT_41450 [Melampsora larici-populina 98AG31] Length = 871 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 272/778 (34%), Positives = 428/778 (55%), Gaps = 31/778 (3%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETALIF 204 + DG ++ + + C GL +V + + +++G++ +L+ Sbjct: 4 VYKRDGRRERVAFDKITARINKLCYGLDNVHVEPIEITKKVINGVFNGVTTVELDNLAAE 63 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + + P+YA + AR + L +E +K ++ LY + Sbjct: 64 TAAYMTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLYRYVNPKNGRPSP 115 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + + L + + Y+RDF + Y G + L Y L I+ E PQ MRV Sbjct: 116 MISDETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIDNKVAERPQHMLMRV 175 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383 A+G+ + ++ A+ YNL+S +F ++PTLFNSGT HPQLSSCFL ++ D + GI Sbjct: 176 AVGIHGTDVDR---AIRTYNLMSEKYFTHASPTLFNSGTPHPQLSSCFLVSMKSDSIDGI 232 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442 + L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 233 YDTLKTCAMISKTAGGIGLNIHDIRATGSYIAGTNGYSNGIVPMLRVFNNTARYVDQGGN 292 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR GA Y+E WH DV ++LDLRKN G + R D+ A WIPDLFM+RV N W LF Sbjct: 293 KRPGAFAIYIEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMQRVEDNGDWPLF 352 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E L D+YG+ FE ++ YE+ E + + + A LW +L ETG+P++ Sbjct: 353 CPAEAPGLSDVYGEAFEKLFDQYEK-----EGRAKKTVKAQKLWYAILEAQTETGNPFML 407 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD N +S Q+++G + SSNLCTEI S+ +E AVCNL SI L + + +D+ KL Sbjct: 408 YKDAANRKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYITDGVYDFQKLH 467 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + L+ +ID+N + + +AKKSN HR IG+G+ G A +L +P+ SPEA ++ Sbjct: 468 EVTKEVTWNLNRIIDVNYYPVPEAKKSNMRHRPIGIGVNGLADAFQILKLPFDSPEAKKL 527 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E + A+ AS ELA GAY +F GS G D G+ + Sbjct: 528 NAQIFETLYHAALEASNELAVAEGAYETFPGSPASLGELQYDMWGVTP----------SD 577 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 WD+LK+R+K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +V Sbjct: 578 LWKWDDLKERIKATGLRNSLLLAPMPTASTSQIMGFNECFEPYTSNIYTRRVLAGEFQIV 637 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +L+ EL + LW++ M + + H GSI NI IP +K ++ T +EI +I+ A+ Sbjct: 638 NPWLLKELVEMGLWNDEMKNRIIAHQGSIQNIPDIPTKMKAVYKTVWEISQKVIIDLAAD 697 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 R +IDQ+QSLN++L P+ +L ++ AW GLKT YYLR+R+A + + T+ Sbjct: 698 RGAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDKK 755 >gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group] gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group] gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group] Length = 814 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 290/838 (34%), Positives = 447/838 (53%), Gaps = 55/838 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + +K+ ++ +Y + R Sbjct: 61 AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNERSGLN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 113 APLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EFE Y YER E K + + A LW +L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYTKYER-----EGKAKKIVPAQTLWFDILKAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA T L+ +IDIN + +E AK+SN HR IG+G+ Sbjct: 465 HPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ SPEA ++ + E I FH++ AS ELA + G Y +++GS +G+ Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W L+ + +G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVVPSDR----------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + +W A+ + + Y DGS+ + IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++++P+ KL ++ AW GLKT Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K N + + + S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812 >gi|224083844|ref|XP_002307143.1| predicted protein [Populus trichocarpa] gi|222856592|gb|EEE94139.1| predicted protein [Populus trichocarpa] Length = 817 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 289/840 (34%), Positives = 445/840 (52%), Gaps = 56/840 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR ++ L + QK+ ++ +Y + + + Sbjct: 61 AETAAAMTANHPDYASLAARIVVSNLHKNT--------QKSFSETIKIMYNHFNDKSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 113 AALIADDIYEIIMKNSARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIDSAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSAHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEENRARDLFYALWVPDLFMERVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +GKEFE Y YER K + + A LW ++L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGKEFEELYTRYER-----NGKAKKVVQAQNLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------ 614 + FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPVES 464 Query: 615 --------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 FD++KLA L+ +ID+N + +E A++SN HR IG+G+ Sbjct: 465 HPSKLVGSRGFKSRYFDFEKLAEVTGVVTSNLNKIIDVNYYPVETARRSNFRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL + + SPEA ++ + E I +HA+ AS E+A G Y +++GS +G+ Sbjct: 525 QGLADTFILLGMSFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYEGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWGVTPSN---------LLWDWDALREMISKNGVRNSLLLAPMPTASTSQILGNNE 635 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW A+ + + Y DGS+ NI IP+D Sbjct: 636 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQNIPEIPND 695 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 696 LKFIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 755 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD------PNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ + + + T + S + +C C Sbjct: 756 MYYLRSRAAADAIKFTVDTSVLQDKKLKSDGAAAAAADDDDTKMAQMVCSLANRDDCLAC 815 >gi|168046427|ref|XP_001775675.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672948|gb|EDQ59478.1| predicted protein [Physcomitrella patens subsp. patens] Length = 813 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 288/837 (34%), Positives = 444/837 (53%), Gaps = 54/837 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVIKRDGRQESVHFDKITARLKKLSYGLNPEHCEPVLVAQKVCMGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + +K+ ++ +Y R + Sbjct: 61 AETAAAMTANHPDYAILAARIAVSNLHKNT--------KKSFSETVKDMYRHVNARSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 113 SPLIDDDVYDLIIKNAALLDSEIIYDRDFDYDYFGFKTLERSYLLRVNGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLY 381 RV++G+ + ++ Y+ +S F ++PTLFN+GT PQLSSCFL T D + Sbjct: 173 RVSVGIH---KDNIDAVLKTYHTMSQRWFTHASPTLFNAGTPRPQLSSCFLVCTKGDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ ++LDLRKN G + R D+ WIPDLFM+RV +N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFDWLDLRKNHGKEENRARDLFYGLWIPDLFMRRVQENGVWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G+EFE Y YE E K + + A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADCWGEEFEKLYTRYE-----VEGKAKKVVQAQKLWFAVLEAQIETGNPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---------- 610 I FKD CN +S QQ++G + SSNLCTEI +S +ETAVCNL SI L Sbjct: 405 ILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASIALPRFVRERGVPMDS 464 Query: 611 ----------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 + + FD++KL R L+ +ID+N + +E A++SN HR IGLG+ Sbjct: 465 HPTKVIGSNGYESRYFDFEKLGEITSLVTRNLNRIIDVNYYPVEAARRSNMRHRPIGLGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A LL +P+ S EA ++ + E I +HA+ S ELA E G Y ++ G +G+ Sbjct: 525 QGLADAFILLGMPFDSEEAQKLNRDIFETIYYHALRTSCELAAEEGVYETYDGCPISKGL 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D + +SR WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMW----------DVKPSSRWDWDALRRMIAKNGVRNSLLLAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+N+L LW + + + + YH+GSI I+ IP Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTDLGLWTQDLKNQIIYHNGSIQQIDAIPAG 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LKKI+ T +EI +++ A+ R +IDQ+QSLN+++D+P+ KL ++ +W GLKT Sbjct: 695 LKKIYRTVWEIKQRAIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYSWTKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVT---DPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ K + + S + EC C Sbjct: 755 MYYLRSRAAADAIKFTVDQSSIKTKQATPAAAIAEDLEVKLSQMVCSLENKEECMSC 811 >gi|20178449|ref|NP_619870.1| CPXV083 protein [Cowpox virus] gi|20153067|gb|AAM13528.1|AF482758_79 CPXV083 protein [Cowpox virus] Length = 771 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 277/814 (34%), Positives = 441/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIESAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L D++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDDVWGDEFERLYTQYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK ++++ G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWDWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW+E + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PPVVCDSEICTSC 769 >gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa Japonica Group] Length = 814 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 290/838 (34%), Positives = 447/838 (53%), Gaps = 55/838 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + +K+ ++ +Y + R Sbjct: 61 AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYGHFNERSGLN 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 113 APLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTTRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EFE Y YER E K + + A LW +L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYTKYER-----EGKAKKIVPAQTLWFDILKAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA T L+ +IDIN + +E AK+SN HR IG+G+ Sbjct: 465 HPSKLVGSSDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ SPEA ++ + E I FH++ AS ELA + G Y +++GS +G+ Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W L+ + +G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVVPSDR----------WNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + +W A+ + + Y DGS+ + IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++++P+ KL ++ AW GLKT Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV----PVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K N + + + S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTALLKANGENGTKAAEEEDVEAKMAQMVCSLNNREECLAC 812 >gi|154297725|ref|XP_001549288.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10] gi|150858403|gb|EDN33595.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10] Length = 909 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 276/782 (35%), Positives = 428/782 (54%), Gaps = 33/782 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL + + + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKERVQFDKITARVSRLCYGLDPDHIDAAAITQKVISGVYQGVNTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K H ++ LY R Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSHVIRDLYQYTNPRNGTA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMISKQTYECVMRHEEELNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E A+E YNL+S+ +F ++PTLF++GT QLSSCFL + D + Sbjct: 173 RVAVGIHGDDIE---SAIETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R GA+I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKICAMISKNAGGIGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D+YG EFE YE+YE+ K + I A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEKA-----GKGRKTIKAQKLWYSILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E A CNL SI L +D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +IDIN + + +A+KSN HR I +G+ G A L +P+ SPE Sbjct: 465 QKLHEVVQVVVRNLNKIIDINYYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I A+++SVE+A+E G Y +++GS +G D G+ Sbjct: 525 AKHLNIQIFETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK+ +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDSLKQSIKQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS+N+++ +P+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GV 919 Sbjct: 755 QE 756 >gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata] Length = 810 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 289/834 (34%), Positives = 447/834 (53%), Gaps = 51/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRPEAVHFDKITARLKKLSYGLTQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR ++ L + +K+ ++ +Y + R +E Sbjct: 61 AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKLMYHHFNERSGQE 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L ++G +E PQ M Sbjct: 113 APLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVSGMVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + K + Y+L+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVAVGIH---KDDIKSVIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFL+LRKN G + R D+ A WIPDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADMYEFLELRKNHGKEEHRARDLFYALWIPDLFMERVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EFE Y YE E K + ++A LW ++L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGDEFEKLYLKYE-----DEGKAKKVVAAQNLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKL L+ +ID+N + +E A++SN HR IG+G+ Sbjct: 465 HPSRLVGSSGSKNRYFDFDKLGEVTAIITENLNKIIDVNYYPVETARRSNLRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ SPEA ++ + E I +HA+ +S E+A G Y +++GS +G+ Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKSSSEIAISSGPYETYQGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D + + R W L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWN----------VTLSDRWDWAALREMISKNGVRNSLLIAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW A+ + + Y DGS+ I IPD+ Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVLKIPEIPDN 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 695 LKAIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ + PV D + + S + EC C Sbjct: 755 MYYLRSRAAADAIKFTVDTSLLQKTTKPVEDDDVEAKMAQVVCSLENREECMAC 808 >gi|296827688|ref|XP_002851208.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma otae CBS 113480] gi|238838762|gb|EEQ28424.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma otae CBS 113480] Length = 874 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 276/808 (34%), Positives = 428/808 (52%), Gaps = 33/808 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF ++Y G + L Y L NG E PQ M Sbjct: 113 APMISEKTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ E ++ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHG---EDVEKVIESYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG+EFE YE YE+ E + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + +D+ Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + V+ L+ +ID N + +E+A++SN HR I +G+ G A L +P+ SPE Sbjct: 465 GKLHEVTQVVVKNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E + A++AS ELA+ G YSS++GS QG+ D + Sbjct: 525 AKLLNIQIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWDALKTEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 K+ V N + + T Sbjct: 755 QEQLKVVDTNVARANGAMRKRVAAAGST 782 >gi|67528364|ref|XP_661984.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain (Ribonucleotide reductase large subunit) [Aspergillus nidulans FGSC A4] gi|40741107|gb|EAA60297.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain (Ribonucleotide reductase large subunit) [Aspergillus nidulans FGSC A4] gi|259482810|tpe|CBF77645.1| TPA: ribonucleoside-diphosphate reductase large chain (Eurofung) [Aspergillus nidulans FGSC A4] Length = 865 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 280/791 (35%), Positives = 426/791 (53%), Gaps = 33/791 (4%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ V C GL V + + + +Y G++ +L+ ++ Sbjct: 21 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAY 80 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + P+YA + AR + L ++ + LY + + Sbjct: 81 MTVTHPDYAILAARIAVSNLHKQTKKQFSLV--------ISDLYHYVNPKNKKPAPMISK 132 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 ++ L + + Y+RDF + + G + L Y L ++G E PQ MRVA+G+ Sbjct: 133 ETYEIVMKHAEELNSAIVYDRDFNYNFFGFKTLERSYLLRLDGKIAERPQHLLMRVAVGI 192 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387 + E+ A+E YNL+S +F ++PTLFN+GT PQL+SCFL + D + GI+ L Sbjct: 193 HGNDIER---AIETYNLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTL 249 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR G Sbjct: 250 KTCAMISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 309 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WTLF P+E Sbjct: 310 AFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNE 369 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D+YG EF+ YE YE+ E + R I A LW +L ETG+P++ +KD Sbjct: 370 APGLADVYGDEFDALYEQYEK-----EGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDA 424 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLAST 624 CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L ++D+ KL Sbjct: 425 CNKKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDASRGEYDFGKLHEV 484 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 ++ VR L+ +IDIN + + +AKKSN HR I LG+ G A L +P+ S EA ++ Sbjct: 485 VQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEAKQLNI 544 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E I A++AS LA+E G Y S++GS QG+ D T Sbjct: 545 QIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGILQYDMWERTP----------TDLW 594 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN Sbjct: 595 DWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 654 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +L LW + M + + GS+ NI IPDD+K ++ T +EI ++E A+ R Sbjct: 655 WLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEISQRRILEMAADRG 714 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 +IDQ+QSLN++L EP+ K+ ++ W MGLKT YYLR+ +A++ + T+ K+ Sbjct: 715 AYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKV 774 Query: 924 NAVPVTDPNSS 934 V + Sbjct: 775 ADTNVARTSKK 785 >gi|195050620|ref|XP_001992932.1| GH13371 [Drosophila grimshawi] gi|193899991|gb|EDV98857.1| GH13371 [Drosophila grimshawi] Length = 821 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 291/835 (34%), Positives = 434/835 (51%), Gaps = 51/835 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L V + + +Y G++ +L+ Sbjct: 11 KLYVIKRDGRQEEIHFDKITSRIQKLCYNLNMDFVDPVSITLKVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + +L + +YA + AR + L +E +K + LY E Sbjct: 71 AAEIAASLTTQHADYALLAARIAVSNLHKET--------RKVFSDVFEDLYKHINKETNE 122 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 H +++ L + + Y+RDF + Y G + L Y L IN E PQ Sbjct: 123 PSPMVSEFHYNIVKKHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINHKIAERPQHML 182 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDL 380 MRV++G+ + AVE YNLLS +F ++PTLF + T PQ+SSCFL T+ D + Sbjct: 183 MRVSIGIHGDD---IDAAVETYNLLSERYFTHASPTLFAAATNRPQMSSCFLLTMVSDSI 239 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF ++++ AM++K +GG+G + +R G I GTNG S G++P L+V N+ A V+Q Sbjct: 240 EGIFKSVEQCAMISKAAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA YLE WH D+ EF+DL+KNTG + R ++ A WIPDLFMKRV N W Sbjct: 300 GGGKRPGAFAIYLEPWHSDILEFMDLKKNTGKEEHRARELFYALWIPDLFMKRVEANEDW 359 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L D++G +FE Y YE+ E K R I A LW ++ ETG P Sbjct: 360 SLMCPHKCPGLQDVWGDDFEKLYVQYEK-----EGKANRVIKAQTLWFAIIEAQVETGTP 414 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDY 618 ++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L ++ +D+ Sbjct: 415 YMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTSDKTYDF 474 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL +T + L+ +IDIN + + +AKKSN HR IG+G+ GF AL L+ PY S E Sbjct: 475 KKLKEVTKTVTKNLNKIIDINYYPLPEAKKSNFRHRPIGIGVQGFADALILMRHPYESEE 534 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I F A+ AS ELAQ+ G Y ++ GS +G+ D G Sbjct: 535 AALLNQQIFETIYFGALEASCELAQKEGPYETYPGSPVSKGILQYDMWGKTP-------- 586 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W+ LK +K G+RNS +A PTA+ A I G ++S +P N+Y + +SG+ Sbjct: 587 --TDLWDWNSLKLSIKEHGVRNSLLVAPMPTASTAQIMGNNESFEPYTSNIYTRRVLSGE 644 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN L+ +L + DLWD+ M + + GSI NIE IP +++ ++ T +EI I+ Sbjct: 645 FQVVNHHLLRDLTELDLWDDDMKNQIIASRGSIQNIESIPKNVRDLYKTVWEISVKTTIK 704 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + + T+ Sbjct: 705 MAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVA 764 Query: 918 GVDGKLNA-------------------VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 V +D + S + C C Sbjct: 765 KGSPVKQTNGLHNTSFVEHNDSMENGNVSESDLERERKMADVVCSLENKDACLSC 819 >gi|260061081|ref|YP_003194161.1| putative ribonucleoside-diphosphate reductase large chain [Robiginitalea biformata HTCC2501] gi|88785213|gb|EAR16382.1| probable ribonucleoside-diphosphate reductase large chain [Robiginitalea biformata HTCC2501] Length = 812 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 284/787 (36%), Positives = 435/787 (55%), Gaps = 27/787 (3%) Query: 159 SKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217 ++ V + C GL D V V + +YDG++ S+L+ + TL P+YA Sbjct: 2 FDKITARVRKLCYGLSDLVDPVKVAMRVIEGLYDGVTTSELDNLAAEIAATLTTTHPDYA 61 Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFD 277 K+ AR + L + +K+ M+ LY R ++ ++ Sbjct: 62 KLAARISVSNLHKNT--------KKSFSETMKDLYEYVNPRTGKKAPLVADDVFEVIQKH 113 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 L + + Y RDF ++Y G + L Y L +NG +E PQ MRV++G+ L + Sbjct: 114 ADTLDSMIIYNRDFGYDYFGFKTLERSYLLKLNGKIVERPQHMLMRVSVGIHLDD---LD 170 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKY 396 E Y L+S +F +TPTLFNSGT PQ+SSCFL + DD + GI+ L++ A +++ Sbjct: 171 AVRETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMQDDSIDGIYNTLKQTAKISQS 230 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETW 455 +GG+G +R G++I GTNG S G++P L+V NDTA V+QGG KRKG+ YLE W Sbjct: 231 AGGIGLSIHNIRATGSYIAGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGSFAIYLEPW 290 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ +FL+L+KN G + R D+ A WI DLFMKRV +A WTL P+E L+ + Sbjct: 291 HADIFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMCPNECPGLYTTHS 350 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EFE Y YE+ E K + I A LW K+L ETG P++ +KD N +S Q++ Sbjct: 351 EEFEELYLKYEK-----EGKGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKN 405 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +G + SSNLCTEI ++ +E AVCNL SI L N +FD+ +L + + L+ V Sbjct: 406 LGTIRSSNLCTEILEYTAEDEVAVCNLASIALPMFIKNGEFDHKELFRVTKRVTKNLNRV 465 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID N + I++A+ SN HR IGLG+ G LL +P+ S EA ++ E E + + A Sbjct: 466 IDRNYYPIKEAENSNMRHRPIGLGVQGLADTFILLRLPFTSDEAKKLNREIFETLYYAAA 525 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS+E+A+E G YSS++GS QG F + G+ + + R W++L+K +K Sbjct: 526 TASMEMAKEEGPYSSYEGSPISQGQFQHNLWGIEDKEL-------SGRWDWEKLRKSIKK 578 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F VVN L+ +L L Sbjct: 579 NGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSLGL 638 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W+E M +L +GSI +I+ IPD++K+++ T +E+ +I+ + +R +IDQ+QSLNL Sbjct: 639 WNENMKQELMRANGSIQHIDAIPDNIKELYQTVWELSMKDIIDMSRQRGYFIDQSQSLNL 698 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +++ + KL ++ AW GLKT YYLR+++A K TL K+ Sbjct: 699 FMENANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTKKKVEVPEAVVTEEG 758 Query: 935 THSLGIP 941 Sbjct: 759 VAPEKAK 765 >gi|169603614|ref|XP_001795228.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15] gi|111066086|gb|EAT87206.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15] Length = 903 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 271/802 (33%), Positives = 426/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYHGVTTIQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ LY + + Sbjct: 61 AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVVS--------DLYTYVNPKNGKS 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF +++ G + L Y L ING E PQ M Sbjct: 113 QPMISDYIYKIIQDHAEELNSAIVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ EK A+E Y+ +S +F ++PTLFN+GT +PQ+SSCFL + D + Sbjct: 173 RVAVGIHGEDIEK---AIETYDYMSQKYFTHASPTLFNAGTPNPQMSSCFLIDMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV FLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D+YG EFE Y YER E K + A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADVYGDEFEELYTRYER-----ENKGRETVRAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L + +FD+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIVEFTAPDEVAVCNLASLALPSFVDYKRGEFDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL R L+ +I++N + +E+A++SN HR IGLG+ G A L +P+ SPE Sbjct: 465 HKLHEVTMVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGLGVQGLADAFLALRLPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A+++S ++A+E G Y++++GS +G D G+ Sbjct: 525 AKKLNTQIFETIYHAALTSSCDIAKELGPYATYEGSPVSKGQLQYDLWGVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + W LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --SDLWDWASLKDKIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW E M + + GSI I IP++ K ++ T +EI +I+ Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIQRIPNIPEETKTLYKTVWEISQRTIIQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 ++ V T Sbjct: 755 QEALQVTDTNVARALPKTRKQP 776 >gi|156101822|ref|XP_001616604.1| ribonucleoside-diphosphate reductase large chain [Plasmodium vivax SaI-1] gi|148805478|gb|EDL46877.1| ribonucleoside-diphosphate reductase large chain, putative [Plasmodium vivax] Length = 848 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 285/842 (33%), Positives = 440/842 (52%), Gaps = 48/842 (5%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192 + ++ G + ++ ++ GL + V V MY G Sbjct: 31 KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + +L+ + + P+++ + AR + L + + + + + Sbjct: 91 IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIGEVAEALYKYTDVRGR 150 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 P I + V ++ L ++ Y RDF ++Y G + L Y L ING Sbjct: 151 P---ASLISKEVYEFMI------EHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINGK 201 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE PQ MRV++G+ + + ++A+E Y+L+S +F +TPTLFNSGT PQ+SSCF Sbjct: 202 IIERPQHLLMRVSIGIHIGD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L + D + GIF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V Sbjct: 259 LLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFM Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV +N WTL P+E L + +G+EFE Y YE + + + A LW +L Sbjct: 379 KRVKENKNWTLMCPNECPGLSESWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAIL 433 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL SI L Sbjct: 434 QSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493 Query: 611 F--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +F++ KL + R LD +I+ N + +E+AK+SN HR IG+G+ G Sbjct: 494 VDVEKREFNFKKLYEITKIITRNLDQIIERNYYPVEEAKRSNKRHRPIGIGVQGLADTFM 553 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 LL PY S A E+ E + + A+ S+ELAQ G Y +++GS QG+ D + Sbjct: 554 LLRYPYESDSAKELNKRIFETMYYGALEMSMELAQLYGPYETYQGSPASQGILQFDMWNV 613 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + WDELK ++K G+RNS +A PTA+ + I G ++S +P N Sbjct: 614 KVDKK---------YWDWDELKAKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP DLK+++ T Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTV 724 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++ Sbjct: 725 WEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784 Query: 908 ATSVEKSTLKGVDGKLNA----------------VPVTDPNSSTHSLGIPSSCTSDTECE 951 AT K T+ K A ++ ++ T ++ P +D +C Sbjct: 785 ATDAIKFTVDTQVAKNAAKMKNAEPVAITREVSRETISTDSTVTQNVVCPLRRNNDDQCL 844 Query: 952 VC 953 +C Sbjct: 845 MC 846 >gi|58267480|ref|XP_570896.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus neoformans var. neoformans JEC21] gi|134112167|ref|XP_775272.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257927|gb|EAL20625.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227130|gb|AAW43589.1| ribonucleoside-diphosphate reductase large chain, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 863 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 288/808 (35%), Positives = 423/808 (52%), Gaps = 33/808 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 + I DG ++ + + GL V + + + ++ G++ +L+ Sbjct: 2 VMWIYKRDGRKEPVAFDKVTARINKLSYGLDPNFVEPAEITQKVVQGIHAGITTVELDNL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ L K P+YA + AR + L +E +K + L+ + + Sbjct: 62 AAETAAYLTTKHPDYAILAARIAISNLHKET--------KKVFSAVVHDLHAWVNPKTGK 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 ++ + L + + Y+RDFA+ Y G + L Y L ING +E PQ Sbjct: 114 HSPMIDDDVYKIVMDNKDILDSAIIYDRDFAYNYFGFKTLERSYLLRINGKIVERPQHMI 173 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + +E YNL+S +F ++PTLFN+GT PQ+SSCFL + DD + Sbjct: 174 MRVAVGIHG---SNIDKVIETYNLMSERYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSI 230 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ A ++K +GG+G +R G++I GTNG S G+IP L+ + TA V+Q Sbjct: 231 DGIYDTLKTCAQISKTAGGIGLHIHNIRAKGSYIAGTNGYSNGIIPMLRAYDATARYVDQ 290 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA YLE WH DV +F+DLRKN G + R D+ A WIPDLFMKRV + W Sbjct: 291 GGNKRPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDW 350 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TL P E L D+YG+EFE YE+YER + K + I A LW +L ETG P Sbjct: 351 TLMCPAECPGLADVYGEEFEKLYESYER-----KGKGRKTIKAQKLWFAILEAQTETGVP 405 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFD 617 +I +KD N +S Q+ +G + SSNLCTEI SS +E AVCNL S+ L A +D Sbjct: 406 YICYKDAANSKSNQKQLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYD 465 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + KL + + LD VI N + + +A+ SN HR +GLG+ G A L +P+ SP Sbjct: 466 FKKLHEITKVVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSP 525 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA E+ + E I A+ AS ELA+E G Y S++GS +G+ D G + Sbjct: 526 EARELNIQIFETIYHAALEASCELAEEFGTYESYEGSPISKGILQYDMWGRVP------- 578 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T W ELK ++ G+RNS +A PTA+ + I G ++ +P LY + +SG Sbjct: 579 ---TDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSG 635 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 DF VV +L+ +L DLWD+ M + GSI +I IPDDLKKI+ T +EI +I Sbjct: 636 DFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVI 695 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +IDQ+QSLN++L PS +L ++ W GLKT YYLR+R + + + T+ Sbjct: 696 DLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTV 755 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 K + S P + Sbjct: 756 DASTLKTAKSLNSSAKPSPTPSPAPGAS 783 >gi|302657477|ref|XP_003020459.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517] gi|291184296|gb|EFE39841.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517] Length = 872 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 276/791 (34%), Positives = 426/791 (53%), Gaps = 33/791 (4%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ V C GL V + + +Y G++ +L+ ++ Sbjct: 4 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + P+YA + AR + L ++ ++ LY + Sbjct: 64 MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IEDLYHYVNPKNGRPAPMISE 115 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 ++ L + + Y+RDF ++Y G + L Y L NG E PQ MRVA+G+ Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387 E ++ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + GI+ L Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR G Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D+YG+EFE YE YE+ E + I A LW +L ETG+P++ +KD Sbjct: 353 APGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDS 407 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624 CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + +D+ KL Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ SPEA + Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNT 527 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E + A++AS ELA+ G YSS++GS QG+ D + T Sbjct: 528 QIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN Sbjct: 578 DWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 697 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ K+ Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 757 Query: 924 NAVPVTDPNSS 934 V N++ Sbjct: 758 VDTNVARTNAA 768 >gi|50557402|ref|XP_506109.1| YALI0F31735p [Yarrowia lipolytica] gi|49651979|emb|CAG78922.1| YALI0F31735p [Yarrowia lipolytica] Length = 892 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 277/812 (34%), Positives = 428/812 (52%), Gaps = 35/812 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA 201 KL ++ DG S ++ ++ C GL V + + +Y+G+S +L+ Sbjct: 3 KLFVIKRDGRKESVQVDKITARIKRLCYGLDPDHVDPIQITLKIASGIYEGVSTIELDNL 62 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ + P+YA + AR + L ++ + LY R + Sbjct: 63 AAETAAYMTTLHPDYAILAARIAVSNLHKQTKKQFSQVV--------YDLYHYVNPRNKK 114 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + + L + Y+RDF + Y G + L Y L +NG+ E PQ Sbjct: 115 HSPMVSKELYDTVQANADELNGAILYDRDFTYNYFGFKTLERAYLLRVNGAVAERPQQMI 174 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRV++G+ + A+E YN +S +F ++PTL+N+GT PQ+SSCFL + DD + Sbjct: 175 MRVSVGIHGDNIAR---AIETYNYMSQKYFTHASPTLYNAGTPQPQMSSCFLVNMKDDSI 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V+Q Sbjct: 232 DGIYDTLKTCALISKSAGGIGLSIHNIRATGSYIAGTNGTSNGIVPMLRVYNNTARYVDQ 291 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA YLE WH D+ EF +LRKN G + R D+ A WIPDLFM+RV QNA W Sbjct: 292 GGNKRPGAFAMYLEPWHDDIFEFCELRKNHGKEEIRARDLFLALWIPDLFMERVEQNAEW 351 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TL P+E L D+YG EF+ YE YE+ E + R I A LW +L E+G+P Sbjct: 352 TLMCPNECPGLDDVYGDEFKQLYEQYEK-----EGRGRRTIPAQKLWYHILDCQTESGNP 406 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL----AHFANNQ 615 ++ +KD CN +S Q+++G + SSNLC EI SS +E AVCNL SI L N+ Sbjct: 407 FMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYSSPDEVAVCNLASIALPTFVTRDDTNSF 466 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +D+ KL + VR L+ +ID N + + +AKKSN HR I LG+ G L +P+ Sbjct: 467 YDFKKLHDIAKVIVRNLNAIIDRNYYPVPEAKKSNMRHRPIALGVQGLADTFMALRLPFE 526 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA ++ + E I A+ AS E+A E GAY +F+GS +G D + Sbjct: 527 SEEAKKLNIQIFETIYHGAVEASYEMALEDGAYETFQGSPASKGDLQFDLWNVTPSEL-- 584 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WD+LK ++ GMRNS +A PTA+ + I G ++ +P N+Y + + Sbjct: 585 --------WEWDDLKAKIMKTGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVL 636 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +G+F +VN +L+ +L + LW+E M + + +GS+ NI IP ++K ++ T +EI Sbjct: 637 AGEFQIVNPWLLKDLVEVGLWNETMKNRIVADNGSVQNIPNIPQEIKDLYKTVWEISQKR 696 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +IE A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+ +A + + Sbjct: 697 IIEMAADRSPFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAAAPIQF 756 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 T+ K + +S + Sbjct: 757 TIDQEALKTIDSSTAKAMLNKKPYQEINSMAN 788 >gi|94486937|gb|ABF26038.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASTPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|22164662|ref|NP_671575.1| EVM057 [Ectromelia virus] gi|22123803|gb|AAM92361.1|AF523264_57 EVM057 [Ectromelia virus] Length = 771 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 275/791 (34%), Positives = 443/791 (56%), Gaps = 32/791 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVVKRNGCRENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIESAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L + +G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPNECPGLDNAWGDEFERLYTQYER-----EKRYKNIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNVFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYAGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK ++++ G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWESLKDKIRSHGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW+E + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNEEIKNRIIADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR+++A+S + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAASSPIQFTLDKE 753 Query: 920 DGKLNAVPVTD 930 K + V ++ Sbjct: 754 KIKPSMVCDSE 764 >gi|94489757|gb|ABF28844.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 278/814 (34%), Positives = 441/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA+++G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKKGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|94486532|gb|ABF25635.1| ribonucleotide reductase large subunit [Variola virus] gi|94486734|gb|ABF25836.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|66275870|ref|YP_232955.1| ribonucleotide reductase large subunit [Vaccinia virus] gi|132611|sp|P12848|RIR1_VACCW RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|335666|gb|AAB59806.1| ribonucleotide reductase [Vaccinia virus] gi|29692179|gb|AAO89352.1| ribonucleotide reductase large subunit [Vaccinia virus WR] Length = 771 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PPVVCDSEICTSC 769 >gi|94484317|gb|ABF23431.1| ribonucleotide reductase large subunit [Variola virus] gi|94489961|gb|ABF29047.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 276/787 (35%), Positives = 438/787 (55%), Gaps = 32/787 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAV 926 K V Sbjct: 754 KIKPLVV 760 >gi|9627579|ref|NP_042102.1| hypothetical protein VARVgp058 [Variola virus] gi|417658|sp|P32984|RIR1_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|62335|emb|CAA47558.1| ribonucleotide reductase (large subunit) [Variola virus] gi|297239|emb|CAA48999.1| K4L [Variola virus] gi|438976|gb|AAA60806.1| homolog of vaccinia virus CDS I4L (ribonucleotide reductase, large subunit); putative [Variola major virus] gi|544814|gb|AAB29605.1| K4L product [variola virus VAR, India-1967, Peptide, 771 aa] gi|94483704|gb|ABF22821.1| ribonucleotide reductase large subunit [Variola virus] gi|94484521|gb|ABF23634.1| ribonucleotide reductase large subunit [Variola virus] gi|94484719|gb|ABF23831.1| ribonucleotide reductase large subunit [Variola virus] gi|94484917|gb|ABF24028.1| ribonucleotide reductase large subunit [Variola virus] gi|94485115|gb|ABF24225.1| ribonucleotide reductase large subunit [Variola virus] gi|94485722|gb|ABF24829.1| ribonucleotide reductase large subunit [Variola virus] gi|94486126|gb|ABF25231.1| ribonucleotide reductase large subunit [Variola virus] gi|94486329|gb|ABF25433.1| ribonucleotide reductase large subunit [Variola virus] gi|94487140|gb|ABF26240.1| ribonucleotide reductase large subunit [Variola virus] gi|94487342|gb|ABF26441.1| ribonucleotide reductase large subunit [Variola virus] gi|94487546|gb|ABF26644.1| ribonucleotide reductase large subunit [Variola virus] gi|94487951|gb|ABF27047.1| ribonucleotide reductase large subunit [Variola virus] gi|94488554|gb|ABF27647.1| ribonucleotide reductase large subunit [Variola virus] gi|94488755|gb|ABF27847.1| ribonucleotide reductase large subunit [Variola virus] gi|94488956|gb|ABF28047.1| ribonucleotide reductase large subunit [Variola virus] gi|94489155|gb|ABF28245.1| ribonucleotide reductase large subunit [Variola virus] gi|94489355|gb|ABF28444.1| ribonucleotide reductase large subunit [Variola virus] gi|94489557|gb|ABF28645.1| ribonucleotide reductase large subunit [Variola virus] gi|94490166|gb|ABF29251.1| ribonucleotide reductase large subunit [Variola virus] gi|109724101|gb|ABG43227.1| ribonucleotide reductase large subunit [Variola virus] gi|109724305|gb|ABG43430.1| ribonucleotide reductase large subunit [Variola virus] gi|109724712|gb|ABG43835.1| ribonucleotide reductase large subunit [Variola virus] gi|109724915|gb|ABG44037.1| ribonucleotide reductase large subunit [Variola virus] gi|109725119|gb|ABG44240.1| ribonucleotide reductase large subunit [Variola virus] gi|109725324|gb|ABG44444.1| ribonucleotide reductase large subunit [Variola virus] gi|109725527|gb|ABG44646.1| ribonucleotide reductase large subunit [Variola virus] gi|109725731|gb|ABG44849.1| ribonucleotide reductase large subunit [Variola virus] gi|109725934|gb|ABG45051.1| ribonucleotide reductase large subunit [Variola virus] gi|109726341|gb|ABG45456.1| ribonucleotide reductase large subunit [Variola virus] gi|109726544|gb|ABG45658.1| ribonucleotide reductase large subunit [Variola virus] gi|745175|prf||2015436BP K4L gene Length = 771 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|37551518|gb|AAQ93170.1| ribonucleotide reductase large subunit [Vaccinia virus] Length = 771 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 277/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK ++KT G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIKTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|156043867|ref|XP_001588490.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum 1980] gi|154695324|gb|EDN95062.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum 1980 UF-70] Length = 910 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 274/801 (34%), Positives = 435/801 (54%), Gaps = 33/801 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C L + + + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKERVQFDKITARVSRLCYALDPDHIDAAAITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ +K H ++ LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQT--------KKQFSHVIRDLYQYTNPKNGKA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y+RDF ++Y G + L Y L ++G E PQ M Sbjct: 113 SPMISKETFECVMRHEEELNSAIVYDRDFNYQYFGFKTLERSYLLRLDGKVAERPQQMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E A+E YNL+S+ +F ++PTLF++GT QLSSCFL + D + Sbjct: 173 RVAVGIHGDDIE---SAIETYNLMSNKYFTHASPTLFSAGTPQAQLSSCFLIDMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R GA+I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKICAMISKNAGGIGLNIHRIRATGAYIAGTNGNSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D+YG+EFE YE+YE+ K + I A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADVYGEEFEALYESYEKA-----GKGRKTIKAQKLWYSILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E A CNL SI L N +D+ Sbjct: 405 MLYKDACNKKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ VR L+ +IDIN + +++A++SN HR I +G+ G A L +P+ SPE Sbjct: 465 QKLHEVVQVVVRNLNKIIDINYYPVQEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I A+++SVE+A+E G Y +++GS +G D G+ Sbjct: 525 AKHLNIQIFETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + WD LK+ +K G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --SDLWDWDSLKQSIKQHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS+N+++ +P+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSL 938 + V ++ Sbjct: 755 QEALLVADTNVARERTTKKRT 775 >gi|1143665|emb|CAA53832.1| unnamed protein product [Variola virus] gi|5830619|emb|CAB54658.1| L4L protein [Variola minor virus] Length = 771 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 276/787 (35%), Positives = 438/787 (55%), Gaps = 32/787 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLAYAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAV 926 K V Sbjct: 754 KIKPLVV 760 >gi|149248790|ref|XP_001528782.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces elongisporus NRRL YB-4239] gi|146448736|gb|EDK43124.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces elongisporus NRRL YB-4239] Length = 881 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 277/795 (34%), Positives = 425/795 (53%), Gaps = 35/795 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLDPTHVEPVAITQKVIAGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ P+YA + AR + L ++ + LY Sbjct: 61 AETAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSAVS--------KILYEYINPETKLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L +NG E PQ M Sbjct: 113 SPMISKETYDIIQEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRVNGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ + +E YNL+S +F +P LFN+GT PQ+SSCFL + D + Sbjct: 173 RVAIGIHGRDIPRV---IETYNLMSQRYFTHGSPCLFNAGTPKPQMSSCFLVAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EF+++RKN G + R D+ A WIPDLFMKRV QN WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFEFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D YG+EFE Y Y E + + I A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLADCYGEEFEELYNKYVA-----EGRGRQTIKAQKLWYSILECQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QF 616 + +KD CN +S Q+++G++ SSNLC EI SS EE AVCNL SI L + + + Sbjct: 405 MLYKDACNAKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFIEQDENKIWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +++KL + R L+ VID N + + +A+KSN HR I LG+ G A +L I + S Sbjct: 465 NFEKLHDVTKVVTRNLNRVIDRNYYPVPEAEKSNMRHRPIALGVQGLADAFMVLRIAFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E+ + E I A+ AS+ELAQE GAY +++GS QG+ D Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAQEEGAYETYQGSPASQGLLQFDLWNRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WDELK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDELKAKLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L +W++AM S + ++GSI + IPD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ AS R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A++ + T Sbjct: 695 IDMASDRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFT 754 Query: 916 LKGVDGKLNAVPVTD 930 + + V D Sbjct: 755 IDKKIAEQAGNTVAD 769 >gi|316969123|gb|EFV53282.1| ribonucleoside-diphosphate reductase large subunit [Trichinella spiralis] Length = 833 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 275/774 (35%), Positives = 429/774 (55%), Gaps = 33/774 (4%) Query: 152 GTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 G + + ++ +++ C GL + + ++ + +Y G++ +L+ S T+ Sbjct: 27 GRREAVHFDKITSRIKKLCYGLNMEHIEPILISQKVIAGLYQGVTTVELDNLAAEISATM 86 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 K P+YA + AR + L +E +K + LY + Sbjct: 87 TTKHPDYATLAARIAVSNLHKET--------KKVFSDVIDDLYQWINPNTNKHSPMISPK 138 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ MRVA+G+ Sbjct: 139 VHQIIQANSQRLNSTIVYDRDFSYSYFGFKTLEKSYLLKINGKVAERPQHLLMRVAIGIH 198 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQ 388 + A+E YNL+S F ++PTLFN+GT PQLSSCFL T+ D + GI+ L+ Sbjct: 199 ---EDDIDAAIETYNLMSEKWFTHASPTLFNAGTCRPQLSSCFLITMKSDSIEGIYDTLK 255 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGA 447 E A+++K +GG+G + +R G +I GTNG S G++P L+V N+TA V+QG KR GA Sbjct: 256 ECAIISKSAGGIGLNVHCIRASGTYIAGTNGYSNGLLPMLRVFNNTARYVDQGGNKRPGA 315 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YLE WH D+ +FLD +KNTG + R D+ A WIPDLFMKR+ + W+L P E Sbjct: 316 FAVYLEPWHADIFDFLDAKKNTGVEENRARDLFYALWIPDLFMKRIEADGDWSLMCPHEC 375 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L DL+G EFE YE YE Q K R+I A LW ++ ETG P++ +KD C Sbjct: 376 PGLADLWGDEFEKLYEKYEAQ-----GKHKRRIKAQQLWYAIIESQIETGTPFMVYKDAC 430 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDYDKLASTI 625 N +S QQ++G + SNLCTEI SS +ET+VCNL SI L +FD+ KLA Sbjct: 431 NRKSNQQNLGTIKCSNLCTEIVQYSSPDETSVCNLASIALNKFVNVAKREFDFAKLAEVT 490 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 + L+ +ID N + + A+KSN HR IG+G+ G A L+ P+ S EA + + Sbjct: 491 KVVTVNLNKIIDRNYYPVAVAEKSNKRHRPIGIGVQGLADAFILMRYPFESEEARLLNKK 550 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E I + A+ +S +LA++ G Y +++GS +G+ D + T Sbjct: 551 IFETIYYAALESSCDLAKQFGPYETYQGSPASKGILQYDMWN----------VQPTDLWD 600 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ LK R++ G+RNS +A PTA+ A I G ++S++ N+Y + +SG+F +VN Sbjct: 601 WESLKCRIEKYGLRNSLLLAPMPTASTAQILGNNESVEAYTSNVYTRRVLSGEFQIVNHH 660 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L+ +L + LWDE++ +++ + GSI +IE IP ++++++ T +EI +I+ A+ R Sbjct: 661 LMKDLVELGLWDESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGA 720 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR++ A + + T+ Sbjct: 721 FIDQSQSLNIHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTVDK 774 >gi|94483909|gb|ABF23025.1| ribonucleotide reductase large subunit [Variola virus] gi|94484112|gb|ABF23227.1| ribonucleotide reductase large subunit [Variola virus] gi|94485317|gb|ABF24426.1| ribonucleotide reductase large subunit [Variola virus] gi|94485520|gb|ABF24628.1| ribonucleotide reductase large subunit [Variola virus] gi|94487747|gb|ABF26844.1| ribonucleotide reductase large subunit [Variola virus] gi|94488154|gb|ABF27249.1| ribonucleotide reductase large subunit [Variola virus] gi|94488354|gb|ABF27448.1| ribonucleotide reductase large subunit [Variola virus] gi|109726138|gb|ABG45254.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKQVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|156083304|ref|XP_001609136.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis T2Bo] gi|154796386|gb|EDO05568.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis] Length = 838 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 295/832 (35%), Positives = 432/832 (51%), Gaps = 42/832 (5%) Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKN 188 A + S + ++ G + R+ + + GL V + V Sbjct: 13 DAFEEAHSTELAPKAMFVINRKGESEEVHFDRILERIRKLSFGLHSLVDAPRVTQSVING 72 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 MY G+ S L+ + + P+Y+K+ AR +++ L + L Sbjct: 73 MYSGIRTSQLDELAAQTCAYMAATHPDYSKLAARIVVDNLHKNTLDNYADVITALFK--- 129 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRY 305 Y + A L+ E + DF ++ + ++ Y RDF ++Y GL+ L Y Sbjct: 130 ---YKYIYDSN------ASLISEEVYDFIMANIDRINAEIDYSRDFQYDYFGLKTLERSY 180 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L IN +E PQ MRV+ G+ + E+ ++ Y+L+S +F +TPTLF SGT Sbjct: 181 LLRINDKIVERPQHMLMRVSAGIHTGDIERT---IQTYHLMSQKYFTHATPTLFFSGTPR 237 Query: 366 PQLSSCFLTTVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSCFL + DD GIF L + A ++K +GG+G +R GA+I GTNGKS G+ Sbjct: 238 PQMSSCFLLDMKDDSLAGIFETLTQCAFISKCAGGIGLACHKIRASGAYIRGTNGKSNGL 297 Query: 425 IPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 +P L++ N TA V+QGG KRKG+ YLE WH D+ +FLDLRKN G + R D+ A Sbjct: 298 VPMLRIFNSTARYVDQGGGKRKGSFAIYLEPWHADIMDFLDLRKNHGAEEARARDLFYAL 357 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPDLFMKRV N WTL PDE L+D++G EFE Y YE E + I A Sbjct: 358 WIPDLFMKRVESNGDWTLMCPDECRGLYDVWGDEFEALYTKYEM-----EGLGRKTIPAQ 412 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW +L ETG+P++ +KD CN +S QQ++G + SSNLC EI +S EE AVCNL Sbjct: 413 TLWFAILQSQIETGNPFMLYKDACNAKSNQQNLGTIKSSNLCCEIVQYTSPEEVAVCNLA 472 Query: 604 SINLLAH--FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 SI L + N +D+ KL R L+ VID N + + +AK SNH HR IG+G+ Sbjct: 473 SIALPMYVDKENKTYDFKKLYDVARVITYNLNKVIDRNYYPVPEAKVSNHRHRPIGVGVQ 532 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L+ P+ S EA E+ E I + + S+ LA++ G Y S+ GS QG Sbjct: 533 GLADTFMLMRYPFESEEAKELNRRIFETIYYGCLDESISLAEKYGTYESYPGSPASQGKL 592 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 D G + + WD LK+R+ G+RNS +A PTA+ + I G ++S Sbjct: 593 QFDLWGATVDNK---------LWDWDGLKQRMAKHGLRNSLFLAPMPTASTSQILGNNES 643 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +P N+Y + +SG+F VVN L+ +L LWD+AM L ++GS+ +IE IP + Sbjct: 644 FEPYTSNIYYRRVLSGEFFVVNPHLLRDLVDLGLWDDAMKEKLIAYNGSLRHIEGIPQHI 703 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-T 900 K ++ T +EI +I+ A+ R +IDQ+QSLN+YLD+P+ KL ++ W GLKT T Sbjct: 704 KDLYKTVWEIKQKSIIDMAADRGIFIDQSQSLNIYLDQPTFGKLTSMHFYGWKKGLKTGT 763 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST----HSLGIPSSCTSDT 948 YYLR+++AT K T+ ++ + + T D Sbjct: 764 YYLRTQAATDAIKFTVDTSVSQMAKATSQQQRAKATDGVSTTEGSPVSTEDP 815 >gi|113195253|ref|YP_717383.1| ribonucleotide reductase large subunit [Taterapox virus] gi|90660529|gb|ABD97642.1| ribonucleotide reductase large subunit [Taterapox virus] Length = 771 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 FPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|30519447|emb|CAD90622.1| L4L protein [Cowpox virus] Length = 771 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 278/814 (34%), Positives = 441/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNMDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIESAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L D++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDDVWGDEFERLYTQYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW+E + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|315056831|ref|XP_003177790.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma gypseum CBS 118893] gi|311339636|gb|EFQ98838.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma gypseum CBS 118893] Length = 870 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 275/801 (34%), Positives = 426/801 (53%), Gaps = 33/801 (4%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ V C GL V + + +Y G++ +L+ ++ Sbjct: 4 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + P+YA + AR + L ++ + LY + Sbjct: 64 MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRPAPMISE 115 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 ++ L + + Y+RDF ++Y G + L Y L NG E PQ MRVA+G+ Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387 E ++ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + GI+ L Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR G Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D+YG+EFE YE YE+ + + I A LW +L ETG+P++ +KD Sbjct: 353 APGLADVYGEEFEALYEKYEK-----DGRGRSTIKAQKLWYAILEAQTETGNPFMLYKDS 407 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624 CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + +D+ KL Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ SPEA + Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNI 527 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E + A++AS ELA+ G YSS++GS QG+ D + T Sbjct: 528 QIFETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN Sbjct: 578 DWDSLKSDISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +L LW + M + + GSI N+ IP D+K ++ T +EI +++ A+ R Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNVPNIPADIKALYKTVWEISQRTIVQMAADRG 697 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ K+ Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKI 757 Query: 924 NAVPVTDPNSSTHSLGIPSSC 944 V N+S + Sbjct: 758 VDTNVARTNASARKRVGTAVS 778 >gi|132610|sp|P20503|RIR1_VACCC RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|56404829|sp|Q76RD8|RIR1_VACCA RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|335407|gb|AAA48059.1| putative I4L [Vaccinia virus Copenhagen] gi|2772697|gb|AAB96436.1| ribonucleotide reductase, large subunit [Vaccinia virus] gi|38348940|gb|AAR17916.1| ribonucleotide reductase large subunit [Vaccinia virus] gi|44971425|gb|AAS49775.1| RPXV062 [Rabbitpox virus] gi|47088393|gb|AAT10463.1| ribonucleotide reductase large subunit [Vaccinia virus] gi|56713441|gb|AAW23481.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus] gi|56713725|gb|AAW23763.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus] gi|88900691|gb|ABD57603.1| VACV069 [Vaccinia virus] gi|90819733|gb|ABD98543.1| VACV-DUKE-081 [Vaccinia virus] gi|160857955|emb|CAM58243.1| ribonucleotide reductase large subunit [Vaccinia virus Ankara] gi|167412562|gb|ABZ79996.1| ribonucleotide reductase large subunit [Vaccinia virus GLV-1h68] Length = 771 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|19718013|gb|AAG37538.1| CMP70L [Camelpox virus CMS] Length = 771 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 275/814 (33%), Positives = 439/814 (53%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAIIAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADTFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|109724507|gb|ABG43631.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 278/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHFDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDEEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|88854118|gb|ABD52536.1| ribonucleotide reductase large subunit M1 [Vaccinia virus] Length = 771 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 441/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 ++ W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SNLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|124809244|ref|XP_001348526.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium falciparum 3D7] gi|23497421|gb|AAN36965.1|AE014821_52 ribonucleoside-diphosphate reductase, large subunit [Plasmodium falciparum 3D7] Length = 847 Score = 685 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 290/841 (34%), Positives = 437/841 (51%), Gaps = 47/841 (5%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192 + ++ G + ++ ++ GL + V V MY G Sbjct: 31 KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + +L+ + + P+++ + AR + L + V + + ++ Sbjct: 91 IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVRGR 150 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 P I + V +L L ++ Y RDF ++Y G + L Y L IN Sbjct: 151 P---ASLISKEVYDFILLHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNK 201 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE PQ MRV++G+ + + +K A+E Y+L+S +F +TPTLFNSGT PQ+SSCF Sbjct: 202 IIERPQHLLMRVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L ++ D + GIF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V Sbjct: 259 LLSMKADSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFM Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV +N WTL P+E L + +G+EFE Y YE + + + A LW +L Sbjct: 379 KRVKENKNWTLMCPNECPGLSETWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAIL 433 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL SI L Sbjct: 434 QSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493 Query: 611 F--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +F++ KL + R LD +I+ N + +++AK SN HR IG+G+ G Sbjct: 494 VDLEKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFM 553 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 LL PY S A E+ E + + A+ SVELA G Y S++GS QG+ D Sbjct: 554 LLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNA 613 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + WDELK +++ G+RNS +A PTA+ + I G ++S +P N Sbjct: 614 KVDNK---------YWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F VVN L+ +L R LWDE M L H+GSI I IPDDLK+++ T Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTV 724 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++ Sbjct: 725 WEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784 Query: 908 ATSVEKSTLKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEV 952 AT K T+ K V+ ST S + C +D +C + Sbjct: 785 ATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLM 844 Query: 953 C 953 C Sbjct: 845 C 845 >gi|94485925|gb|ABF25031.1| ribonucleotide reductase large subunit [Variola virus] Length = 771 Score = 685 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 279/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMKDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A A+W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARAVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL SI L + QFD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVIDGQFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW+ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNNEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|62288418|gb|AAX78464.1| unknown [synthetic construct] Length = 797 Score = 685 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 277/824 (33%), Positives = 442/824 (53%), Gaps = 50/824 (6%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDG 192 D ++ ++ +G + ++ + + C GL + + + + +Y+G Sbjct: 17 IDDDDKHMLEMFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNG 76 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+T + T + P+YA + AR + L +E +K M+ L+ Sbjct: 77 VTTVELDTLAAEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLF 128 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + + + +++ L + + YERDF++ Y G + L Y L IN Sbjct: 129 NYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNK 188 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 +E PQ MRVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCF Sbjct: 189 IVERPQHMLMRVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCF 245 Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L + D + GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V Sbjct: 246 LLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVY 305 Query: 432 NDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TA ++QG KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFM Sbjct: 306 NNTARYIDQGGNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFM 365 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV + W+L PDE L +++G EFE Y YER E + I A +W+ ++ Sbjct: 366 KRVKDDGEWSLMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAII 420 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P+I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L Sbjct: 421 ESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMF 480 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + +FD+ KL ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL Sbjct: 481 VIDGRFDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILL 540 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + P+ S EA ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 541 NYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP 600 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y Sbjct: 601 ----------SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 650 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +E Sbjct: 651 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 709 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +I+ A+ R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A+ Sbjct: 710 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 769 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + TL K P C C Sbjct: 770 APIQFTLDKDKIK------------------PPVVCDSEICTSC 795 >gi|18640305|ref|NP_570461.1| CMLV071 [Camelpox virus] gi|18482981|gb|AAL73778.1|AF438165_68 ribonucleotide reductase large subunit [Camelpox virus M-96] Length = 771 Score = 685 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAIIAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----EKRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|302498356|ref|XP_003011176.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371] gi|291174724|gb|EFE30536.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371] Length = 870 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 276/791 (34%), Positives = 426/791 (53%), Gaps = 33/791 (4%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ V C GL V + + +Y G++ +L+ ++ Sbjct: 4 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + P+YA + AR + L ++ ++ LY + Sbjct: 64 MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IEDLYHYVNPKNGRPAPMISE 115 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 ++ L + + Y+RDF ++Y G + L Y L NG E PQ MRVA+G+ Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387 E ++ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + GI+ L Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR G Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D+YG+EFE YE YE+ E + I A LW +L ETG+P++ +KD Sbjct: 353 APGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDS 407 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624 CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + +D+ KL Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ SPEA + Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNT 527 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E + A++AS ELA+ G YSS++GS QG+ D + T Sbjct: 528 QIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN Sbjct: 578 DWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRG 697 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ K+ Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 757 Query: 924 NAVPVTDPNSS 934 V N++ Sbjct: 758 VDTNVARTNAA 768 >gi|51342225|gb|AAU01269.1| MPXV-WRAIR059 [Monkeypox virus] gi|58220529|gb|AAW67817.1| MPXV-SL-059 [Monkeypox virus] gi|59858865|gb|AAX09160.1| MPXV-COP-059 [Monkeypox virus] gi|68448741|gb|AAY96864.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|68449343|gb|AAY97463.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|68449543|gb|AAY97662.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] Length = 771 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG+D RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKCIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS +LA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PQVVCDSEICTSC 769 >gi|68448942|gb|AAY97064.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|68449144|gb|AAY97265.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] gi|300872688|gb|ADK39090.1| ribonucleotide reductase protein large subunit [Monkeypox virus] Length = 771 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 441/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS +LA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PQVVCDSEICTSC 769 >gi|221059988|ref|XP_002260639.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium knowlesi strain H] gi|193810713|emb|CAQ42611.1| ribonucleoside-diphosphate reductase, large subunit, putative [Plasmodium knowlesi strain H] Length = 848 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 282/842 (33%), Positives = 442/842 (52%), Gaps = 48/842 (5%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192 + ++ G + ++ ++ GL + V V MY G Sbjct: 31 KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + +L+ + + P+++ + AR + L + + + + ++ Sbjct: 91 IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAEVAEALYMYKDVRGR 150 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 P I + V ++ L ++ Y RDF ++Y G + L Y L ING Sbjct: 151 P---ASLISKEVYDFMIQHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINGK 201 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE PQ MRV++G+ + + ++A+E Y+L+S +F +TPTLFNSGT PQ+SSCF Sbjct: 202 IIERPQHLLMRVSIGIHIGD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L + D + GIF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V Sbjct: 259 LLCMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFM Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV +N WTL P+E L + +G EFE Y YE E + + A LW +L Sbjct: 379 KRVKENQNWTLMCPNECPGLSESWGAEFEKLYLKYEE-----EGMGKKTVLAQDLWFAIL 433 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL SI L Sbjct: 434 QSQIETGVPYMLYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493 Query: 611 FA--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +F++ KL + R LD +I+ N + +++A++SN HR IG+G+ G Sbjct: 494 VDVDKREFNFKKLYEITKIITRNLDQIIERNYYPVQEAERSNKRHRPIGIGVQGLADTFM 553 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 LL PY S A E+ E + + A+ S+ELAQ G Y +++GS QG+ D + Sbjct: 554 LLRYPYESDSAKELNKRIFETMYYAALEMSMELAQIYGPYETYQGSPASQGILQFDMWNV 613 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + WD+LK+++K G+RNS +A PTA+ + I G ++S +P N Sbjct: 614 KVDNK---------YWDWDKLKEKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP+DLK+++ T Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDLKELYKTV 724 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++ Sbjct: 725 WEIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784 Query: 908 ATSVEKSTLKGVDGK----------------LNAVPVTDPNSSTHSLGIPSSCTSDTECE 951 AT K T+ K ++ ++ ++ T ++ P D +C Sbjct: 785 ATDAIKFTVDTQVAKNAAKMKNEEGVAITREVSRETISTESTVTQNVVCPLRRNKDDQCL 844 Query: 952 VC 953 +C Sbjct: 845 MC 846 >gi|6969720|gb|AAF33932.1| TI4L [Vaccinia virus Tian Tan] Length = 771 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 439/814 (53%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGFRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|323452424|gb|EGB08298.1| hypothetical protein AURANDRAFT_37557 [Aureococcus anophagefferens] Length = 793 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 273/823 (33%), Positives = 429/823 (52%), Gaps = 42/823 (5%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESD 197 ++++ +G + ++ +++ C GL + + + + +YDG++ + Sbjct: 2 SADDDMQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHE 61 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ ++ + + P+++ + AR + L + T +K L+ Sbjct: 62 LDELAAQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK--------LHKHMHP 113 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 + + + + + + YERDF ++Y G + L Y + ++G+ E P Sbjct: 114 KTKKPAALISDETYATVQKHKDAINAAIVYERDFEYDYFGFKTLERSYLMRLDGAIAERP 173 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376 Q MRVA+G+ + A+E Y ++S F +TPTLFN+GT PQLSSCFL + Sbjct: 174 QHMIMRVALGIHGDD---LAAALETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMK 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA Sbjct: 231 EDSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTAR 290 Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGG +RKG+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV Sbjct: 291 YVDQGGGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEA 350 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N W+L P+E L D +G EFE YE YE E + + I A LW +L E Sbjct: 351 NGFWSLMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWFAILDSQVE 405 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--- 612 TG P++ +KD CN +S Q+H+G + SSNLCTEI ++S+E AVC L SINL H Sbjct: 406 TGTPYMLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAG 465 Query: 613 -NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 FD+ KL T + L+ V+D+N + +E+AK SN HR +G+G+ G AL L Sbjct: 466 DAATFDFAKLKRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLR 525 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 PY S +A I + E I F A+ AS++LAQE G Y S+ GS QG+F D Sbjct: 526 HPYESDDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWN---- 581 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + R W+ L+ R+ G RNS +A PTA+ A I G ++S +P N+Y Sbjct: 582 ------VKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYT 635 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + ++G+F VVN +L+ +L LW + + + GS+ + IPDDLK ++ T +EI Sbjct: 636 RRVLAGEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEI 695 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 +++ ++ R +I Q+QSLNL++ +P+ KL ++ AW GLKT YYLR+R Sbjct: 696 KQKCVLDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKAD 755 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ + ++ + EC C Sbjct: 756 AIAFTVDQAMAAKSRGGAALELANGQEAE-------EHECLSC 791 >gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max] Length = 809 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 290/834 (34%), Positives = 448/834 (53%), Gaps = 52/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSTEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + +H + I + Sbjct: 61 AETAAAMTANHPDYASLAARIAVSNLHKNTKKSFSETIKVMYYHFNER--SAMKAPLIAD 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 V ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 119 DVYEIII------KNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + AV Y+++S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIDSAVRTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+ DLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMERVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G+EFE Y YER E K + + A LW ++L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGEEFEKLYTQYER-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L + Sbjct: 405 MLFKDTCNKKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKGVPMES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKL L+ +ID+N + ++ A++SN HR IG+G+ Sbjct: 465 HPSKLVGSRGSKNRYFDFDKLGEVTAIVATNLNKIIDVNYYPVDTARRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL + + SPEA ++ + E I +HA+ S ELA + G Y ++ GS +G+ Sbjct: 525 QGLADTFILLGVAFDSPEAQQLNKDIFETIYYHALKTSSELAAKEGPYETYSGSPISKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G++ +SR WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWGVMP----------SSRWDWDALREMIAKTGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW + +++ Y DGS+ I IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTIKNNIIYEDGSVQKIPEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 695 LKIIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ + + ++ T + S T+ EC C Sbjct: 755 MYYLRSRAAADAIKFTVDTSMLHEKPMAEEEDDN-TKMAQMVCSLTNREECLAC 807 >gi|224096482|ref|XP_002310626.1| predicted protein [Populus trichocarpa] gi|222853529|gb|EEE91076.1| predicted protein [Populus trichocarpa] Length = 812 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 291/836 (34%), Positives = 444/836 (53%), Gaps = 53/836 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSTDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR ++ L + K+ ++ +Y + + + Sbjct: 61 AETAAAMTANHPDYASLAARIVVSNLHKNT--------HKSFSETIKIMYNHFNEKSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 113 APLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIDSALKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADVFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +GKEFE Y YER + K + + A LW ++L ETG P+ Sbjct: 350 LFCPSEAPGLADCWGKEFEELYTRYER-----DGKAKKVVQAQNLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------ 614 + FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPIES 464 Query: 615 --------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 FD++KLA L+ +ID+N + +E A++SN HR IG+G+ Sbjct: 465 HPSKVVGSRGSNRRYFDFEKLAEVTGVVTVNLNKIIDVNYYPVETARRSNFRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A LL + + SPEA ++ + E I +HA+ AS E+A G Y ++ GS +G+ Sbjct: 525 QGLADAFMLLGMAFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYVGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ +S WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWGVTP----------SSLWNWDALREMISKNGVRNSLLLAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW A+ + + Y DGS+ I I DD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQKIPEISDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 695 LKCIYKTVWEIKQKTLVDMAVDRGCFIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRS++A K T+ K + T + S T+ EC C Sbjct: 755 MYYLRSQAAADAIKFTVDTSVFKEKKPELDDDAAADDTKIAQMVCSLTNREECMAC 810 >gi|312212194|emb|CBX92278.1| similar to ribonucleoside-diphosphate reductase subunit large [Leptosphaeria maculans] Length = 903 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 269/802 (33%), Positives = 426/802 (53%), Gaps = 33/802 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ L+ Sbjct: 1 MFVFKRDGRKERVQFDKITARVSRLCYGLDPDHVDPAAITMKVISGVYQGVTTIQLDDLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ LY + + Sbjct: 61 AETAAYMTTTHPDYAILAARIAVSNLHKQTKKQFSAVV--------HDLYSYVNPKNGKS 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF +++ G + L Y L ING E PQ M Sbjct: 113 QPMISDKVYKIVMAHADELNSAVVYDRDFNYQFFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ EK A+E Y+ +S +F ++PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVAVGIHGEDIEK---AIETYDYMSQKYFTHASPTLFNAGTPSPQMSSCFLIDMKEDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNVHRIRATGSYIGGTNGTSNGLIPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV FLDLRKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D+YG EFE YE+YE+ + K + A LW +L ETG+P+ Sbjct: 350 LMCPNECPGLADVYGDEFEALYESYEK-----KGKGRETVRAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--AHFANNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI ++ +E AVCNL S+ L + +FD+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPSFVDYKRGEFDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + R L+ +I++N + +E+A++SN HR IG+G+ G A L +P+ SPE Sbjct: 465 KKLHEVTQVVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A+++S ++A+E G Y ++ GS QG+ D + Sbjct: 525 AKKLNIQIFETIYHAALTSSCDIAKELGPYETYAGSPVSQGILQYDMWNVTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W LK+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWAALKEKIAQYGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW E M + + GSI I IP++ K ++ T +EI +I+ Sbjct: 635 FQVVNPWLLKDLVDMGLWSENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRTIIQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+++ EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLG 939 ++ V Sbjct: 755 QEALQVADTNVARALPKVRKQP 776 >gi|302805775|ref|XP_002984638.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii] gi|300147620|gb|EFJ14283.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii] Length = 803 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 287/831 (34%), Positives = 444/831 (53%), Gaps = 52/831 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ L IV + +Y G++ S L+ Sbjct: 1 MYVIKRDGKQEAVHFDKITARLKKLSYSLNPDYCDPVIVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ P+YA + AR ++ L ++ + + ++ H + + I Sbjct: 61 AETAASMTTSHPDYAILAARIVVSNLHKKTKKSFSETVKEMYSHVDERSGLK--APLIAN 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 V ++ + L +++ Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 119 DVYDIIM------KNAAKLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGRVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ E + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVSVGIH---KEDIEAAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R ++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRATNSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH DV ++LDL+KN G + R D+ WIPDLFM+RV N+ W+ Sbjct: 290 GGKRKGAFAIYLEPWHADVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G+EFE Y YER E + R +SA LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADCWGEEFESLYTRYER-----EGRAKRSLSAQKLWFAILESQMETGNPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---------- 610 + FKD CN +S QQ++G + SNLCTEI +S ETAVCNL SI L Sbjct: 405 MVFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSPSETAVCNLASIALPRFVREQGINSET 464 Query: 611 -------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 N FD+ KLA L+ +IDIN + ++ AK+SN HR IG+G+ G Sbjct: 465 KLVGSKGCKNRVFDFHKLAEVTTVVTENLNKIIDINYYPVDTAKRSNLRHRPIGIGVQGL 524 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 A LL +P+ S EA ++ + E I +HA+ S LA+ G Y ++ GS +GVF Sbjct: 525 ADAFILLGLPFDSEEARDLNKDIFETIYYHAMKTSSILAELYGVYETYPGSPVSKGVFQP 584 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D ++ + R W LK+ V G+RNS +A PTA+ + I G ++ + Sbjct: 585 DMWNVIP----------SGRWDWAALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFE 634 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P N+Y + +SG+F VVN L+N+L +W + + + ++GSI +IE IPDDLK+ Sbjct: 635 PYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQ 694 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902 I+ T +EI +++ A R +IDQ+QSLN+++++P+ KL ++ AW GLKT YY Sbjct: 695 IYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYY 754 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 LRS++A K T+ K T + S + C C Sbjct: 755 LRSQAAADAIKFTVDTASLK----SPTKTTDEELLAQMVCSLENRENCLAC 801 >gi|327301679|ref|XP_003235532.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton rubrum CBS 118892] gi|326462884|gb|EGD88337.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton rubrum CBS 118892] Length = 870 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 276/791 (34%), Positives = 425/791 (53%), Gaps = 33/791 (4%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ V C GL V + + +Y G++ +L+ ++ Sbjct: 4 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQRVISGVYQGVTTVELDNLAAETAAY 63 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + P+YA + AR + L ++ + LY + Sbjct: 64 MTVTHPDYAILAARIAVSNLHKQTKKQFSSV--------IDDLYHYVNPKNGRPAPMISE 115 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 ++ L + + Y+RDF ++Y G + L Y L NG E PQ MRVA+G+ Sbjct: 116 KTREIVMKHAEELNSAIVYDRDFNYQYFGFKTLERSYLLRTNGKVAERPQHMIMRVAVGI 175 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGAL 387 E ++ +E YNL+S +F ++PTLFN+GT PQ++SCFL + D + GI+ L Sbjct: 176 HG---EDVEKVIETYNLMSQKYFTHASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTL 232 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR G Sbjct: 233 KTCALISKTAGGIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPG 292 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WTLF P+E Sbjct: 293 AFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNE 352 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D+YG+EFE YE YE+ E + I A LW +L ETG+P++ +KD Sbjct: 353 APGLADVYGEEFEALYEKYEK-----EGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDS 407 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLAST 624 CN +S Q+++G + SSNLCTEI ++ +E AVCNL SI L + +D+ KL Sbjct: 408 CNRKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEV 467 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR L+ +ID N + +E+A++SN HR I +G+ G A L +P+ SPEA + Sbjct: 468 TQVVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNT 527 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E + A++AS ELA+ G YSS++GS QG+ D + T Sbjct: 528 QIFETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTP----------TDLW 577 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 WD LK + G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN Sbjct: 578 DWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNP 637 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L+ +L LW + M + + GSI NI IP D+K ++ T +EI +++ A+ R Sbjct: 638 WLLKDLVDLGLWSDNMKNRIIADGGSIQNISNIPADIKALYKTVWEISQRTIVQMAADRG 697 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL 923 +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A++ + T+ K+ Sbjct: 698 AFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 757 Query: 924 NAVPVTDPNSS 934 V N++ Sbjct: 758 VDTNVARTNAA 768 >gi|156838441|ref|XP_001642926.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM 70294] gi|156113506|gb|EDO15068.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM 70294] Length = 883 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 278/816 (34%), Positives = 428/816 (52%), Gaps = 37/816 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ + C GL + V +Y+G++ +L+ Sbjct: 1 MYVIKRDGREEPVRFDKITARISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTYELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ K + L+ + Sbjct: 61 AETAAYMTTVHPDYAVLAARLAVSNLHKQT--------TKVFSKVIDELHHYVNPENNKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + L + + Y+RDF + Y G + L Y L + G E PQ M Sbjct: 113 APLISKDVYDTVMANKDELNSAIVYDRDFNYNYFGFKTLERSYLLRMKGKVAERPQHMVM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + K A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAIGIHGND---IKAAIESYNLMSQRYFTHASPTLFNAGTPRPQMSSCFLVAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECAMISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA+ YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +NA WT Sbjct: 290 GNKRPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENADWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L ++YG+EFE Y Y E + + I A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLDEVYGEEFEALYNRYVE-----EGRGKKTIKAQKLWYSILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL------AHFANN 614 + +KD CN++S Q+++G + SSNLC EI S+ +ETAVCNL SI L + Sbjct: 405 MLYKDACNLKSNQRNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEKSKDEKQS 464 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++ KL + R L+ VID N + +++AK SN HR I LG+ G A LL IP+ Sbjct: 465 FYNFKKLHDIAKVVTRNLNRVIDRNYYPVQEAKNSNFRHRPIALGVQGLADAFMLLRIPF 524 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA E+ E + A+ AS ELAQE GAY +FKGS +G+ D Sbjct: 525 ESKEAKELNIHIFETLYHGALEASCELAQEEGAYQTFKGSPASEGILQFDMWNRKP---- 580 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 T WD LK + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 581 ------TDLWDWDTLKSNIIAHGIRNSLVMAPMPTASTSQILGYNECFEPFTSNMYQRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F +VN +L+ +L +W+E+M L +GSI N+ +P +LK ++ T +EI Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWNESMKQHLITDNGSIQNLPNVPQELKDLYKTVWEISQK 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I+ ++ R +IDQ+ S+N+++ P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 695 TIIDMSADRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 T+ + V D + +P + Sbjct: 755 FTIDKKVAEKAGESVADIANLNRPHYVPRKLNISED 790 >gi|323454028|gb|EGB09899.1| hypothetical protein AURANDRAFT_24558 [Aureococcus anophagefferens] Length = 787 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 272/818 (33%), Positives = 429/818 (52%), Gaps = 42/818 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 ++++ +G + ++ +++ C GL + + + + +YDG++ +L+ Sbjct: 1 MQVVKRNGKKETVRYDKITSRIQKLCYGLDAKYIKPNQITQKVIQGVYDGVTTHELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + + P+++ + AR + L + T +K L+ + + Sbjct: 61 AQTTAYMATQHPDFSVLAARISVSNLHKSTDNTFSDVVEK--------LHKHMHPKTKKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + + Y+RDF ++Y G + L Y + ++G+ E PQ M Sbjct: 113 AALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + A E Y ++S F +TPTLFN+GT PQLSSCFL + D + Sbjct: 173 RVALGIHGDD---LAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G +RKG+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV N W+ Sbjct: 290 GGRRKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D +G EFE YE YE E + + I A LW +L ETG P+ Sbjct: 350 LMCPNECPGLADCHGAEFEALYERYEA-----EGRARKAIPAQQLWFAILDSQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQF 616 + +KD CN +S Q+H+G + SSNLCTEI ++S+E AVC L SINL H F Sbjct: 405 MLYKDACNDKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATF 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL T + L+ V+D+N + +E+AK SN HR +G+G+ G AL L PY S Sbjct: 465 DFAKLRRTAYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYES 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A I + E I F A+ AS++LAQE G Y S+ GS QG+F D Sbjct: 525 DDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWN--------- 575 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + + R W+ L+ R+ G RNS +A PTA+ A I G ++S +P N++ + ++ Sbjct: 576 -VKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMFTRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F VVN +L+ +L LW + + + GS+ + IPDDLK ++ T +EI + Sbjct: 635 GEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCV 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 ++ ++ R +I Q+QSLNL++ +P+ KL ++ AW GLKT YYLR+R T Sbjct: 695 LDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFT 754 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + ++ L + EC C Sbjct: 755 VDQAMAAKSRGGAALEPANGQELE-------EHECLSC 785 >gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor] gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor] Length = 815 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 287/839 (34%), Positives = 446/839 (53%), Gaps = 56/839 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + +K+ ++ +Y + R Sbjct: 61 AETAAAMTASHPDYASLAARIAVSNLHKNT--------KKSFSETIKDMYMHFNERSGLM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 113 APLVAEDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E + A+ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KEDIESAIRTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G+EF+ Y+ YE Q K + + A LW +L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGEEFDNLYKKYESQ-----GKAKKVVPAQTLWFDILKAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEFTSPNETAVCNLASIALPRFVREKGVPLES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD++KLA T L+ +IDIN + +E AK+SN HR IG+G+ Sbjct: 465 HPSKLVGSSDSKNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ SPEA ++ + E I +H++ AS ELA + G Y +++GS +G+ Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYEGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W L++ + +G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWDVVPSNR----------WNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + +W + + + Y DGS+ I IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++++ + KL ++ AW GLKT Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAV-----PVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K N T+ + + S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTTLLKENGNVVSNGKPTEEDVEAKMAQMVCSLNNREECMAC 813 >gi|90660311|gb|ABD97425.1| ribonucleotide reductase large subunit [Cowpox virus] Length = 771 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 277/814 (34%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGTSNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L D++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDDVWGDEFERLYTQYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDERFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PLVVCDSEICTSC 769 >gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti] gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti] gi|108873131|gb|EAT37356.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti] Length = 844 Score = 683 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 284/809 (35%), Positives = 429/809 (53%), Gaps = 32/809 (3%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200 K+ + DG + ++ +++ C GL V + + +Y G++ +L+ Sbjct: 6 NKMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYSGVTTQELDN 65 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 ++ T+ + +YA + AR + L +E M LY Sbjct: 66 LAAETAATMTTEHADYAILAARLAVSNLHKETKKHFSDV--------MHDLYMMENEHLK 117 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + H ++ L + + Y+RDF + Y G + L Y L I G +E PQ Sbjct: 118 KRTPMISEFHYKVIMDHADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHM 177 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 MRVA+G+ E A+E YNLLS +F ++PT+F + T PQLSSCFL T+ DD Sbjct: 178 LMRVAIGIHG---EDIDAAIETYNLLSERYFTHASPTMFAAATCRPQLSSCFLLTMSDDS 234 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L++ A+++K +GG+G + +R G +I GTNG S G+IP L+V N+TA V+ Sbjct: 235 IEGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYIAGTNGISNGLIPMLRVYNNTAKYVD 294 Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG KR GA YLE WH DV EFLDL+KNTG + R DM A WIPDLFMKRV N Sbjct: 295 QGGNKRPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANED 354 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L P E L D +G+EFE Y +YE E + RK+ A LW ++ ETG Sbjct: 355 WCLMCPHECPGLSDTWGEEFEKLYTSYEA-----EGRYIRKVKAQDLWFAIIESQVETGV 409 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FD 617 P++ +KD CN +S QQ++G + SNLCTEI SS +E AVCNL SI L ++ +D Sbjct: 410 PYMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKPDKTYD 469 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + KL + A + L+ +IDIN + + +AK+SN HR IG+G+ G A L+ PY S Sbjct: 470 FQKLKEVAKIATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSE 529 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I + A+ AS ELA++ G Y ++ G +GV D Sbjct: 530 EAQKLNQQIFETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYDMWNKEP------- 582 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T W LK+++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 583 ---TDMWDWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSG 639 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F +VN L+ +L + DLWD+ M + + ++GSI NIE IP ++ ++ T +EI I Sbjct: 640 EFQIVNHHLLKDLTELDLWDDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCI 699 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +IDQ+QS N+++ EP+ KL I+ W MGLKT YYLR++ A + + T+ Sbjct: 700 KMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTV 759 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 + + + + + Sbjct: 760 DKTRLNQSNRINNSDTVNGSPSKMNGATS 788 >gi|168022742|ref|XP_001763898.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684903|gb|EDQ71302.1| predicted protein [Physcomitrella patens subsp. patens] Length = 811 Score = 683 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 290/835 (34%), Positives = 446/835 (53%), Gaps = 52/835 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVIKRDGRQEAVHFDKITARLKKLSYGLNPEHCEPVLVAQKVCMGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + +H + + I + Sbjct: 61 AETAAAMTANHPDYAILAARIAVSNLHKNTKKSFSETVKDMYYHVNERSGLK--SPLIAD 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 V ++ + L +++ Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 119 DVYDIII------KNAPRLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ E + ++ Y+++S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVSVGIH---KENIEAVLKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKNDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRTTGSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ E+LDLRKN G + R D+ WIPDLFM+RV N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEWLDLRKNHGKEESRARDLFYGLWIPDLFMQRVQNNGTWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G++FE Y YE E + + + A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADCWGEQFETLYARYE-----LEGRAKKVVQAQKLWFAVLEAQIETGNPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---------- 610 I FKD CN +S QQ++G + SSNLCTEI +S +ETAVCNL S+ L Sbjct: 405 ILFKDACNRKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASLALPRFVREKGVSLES 464 Query: 611 ----------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD++KL R L+ +ID+N + +E A++SN HR IGLG+ Sbjct: 465 HPTKIIGSNGHENRFFDFNKLGEITSLVTRNLNRIIDVNYYPVETARRSNMRHRPIGLGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A LL +P+ S EA ++ + E I +HA+ S ELA E G Y ++ GS +G Sbjct: 525 QGLADAFILLGMPFDSEEAQQLNRDIFETIYYHALKTSCELAAEEGVYETYAGSPISKGA 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D + ++R WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWN----------VKPSTRWDWDSLRQMILNNGVRNSLLLAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+N+L LW + + + YH+GSI I+ IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTNMGLWTHDLKNQVIYHNGSIQQIDVIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LKKI+ T +EI +++ A+ R +IDQ+QSLN+++D+P+ KL ++ W GLKT Sbjct: 695 LKKIYRTVWEIKQRSIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLN-AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ K V N + S + EC C Sbjct: 755 MYYLRSRAAADAIKFTVDQSSIKQETPAAVVSNNLEEKMSQMVCSLENKDECMSC 809 >gi|27261144|gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max] Length = 808 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 294/834 (35%), Positives = 449/834 (53%), Gaps = 53/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVVKRNGRQETVHFDKITARLKKLSYGLSSDHCDAVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + Y ++ Sbjct: 61 AETAAAMTANHPDYACLAARIAVSNLHKNTKKSFSETIKIMY-------YHFNERSGLKA 113 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + A ++E +M + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 114 PLIADDVYEIIMK-NAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGQVLERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + AV+ Y+++S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIDSAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYETLKECAIISKSAGGIGVSIHDIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G++FE Y YER E K + + A +LW ++L ETG P+ Sbjct: 350 LFCPSEAPGLTDCWGEKFEELYLQYER-----EGKAMKVVQAQSLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-------- 612 + FKD CN +S QQ++G + SSNLCTEI SS ETAVCNL SI L + Sbjct: 405 MLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMES 464 Query: 613 ------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA L+ VID+N + +E AK+SN HR IG+G+ Sbjct: 465 HPSKLVGSTCSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL + + SPEA ++ E E I +HA+ S LA + G Y ++ GS +G+ Sbjct: 525 QGLADTFILLGMAFDSPEAQQLNKEIFETIYYHALKTSCGLAAKEGPYETYSGSPISKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G + ++R WD L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWG----------VAPSNRWDWDALREMISKNGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW + + + Y DGS+ I IP D Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPAD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A+ R +IDQ+QSLN+++D+P+ KL + AW GLKT Sbjct: 695 LKNIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLQFYAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ L + + +T + S T+ EC C Sbjct: 755 MYYLRSRAAADAIKFTVDTS--ALREKSNVEDDDNTKMAQMVCSLTNRDECLAC 806 >gi|17974978|ref|NP_536492.1| I4L [Monkeypox virus Zaire-96-I-16] gi|17529845|gb|AAL40523.1|AF380138_65 I4L [Monkeypox virus Zaire-96-I-16] Length = 771 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 440/814 (54%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G +I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGGYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPRLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS +LA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIAQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PQVVCDSEICTSC 769 >gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST] gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST] Length = 809 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 281/826 (34%), Positives = 435/826 (52%), Gaps = 41/826 (4%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200 K+ + DG + ++ +++ C GL V + +Y G++ +L+ Sbjct: 8 NKMYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLRVINGLYSGVTTQELDN 67 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 ++ TL +YA + AR + L +E + M LY Sbjct: 68 LAAETAATLTTDHADYAILAARLAVSNLHKETKKQFSEV--------MHDLYMMENEFLK 119 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + H ++ + L + + Y+RDF + Y G + L Y L I G +E PQ Sbjct: 120 TKSPMISDFHYKVIMDNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHM 179 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379 MRVA+G+ E A+E YNLLS +F ++PT+F + T+ PQLSSCFL T+ D Sbjct: 180 LMRVAIGIHG---EDIDAAIETYNLLSERYFTHASPTMFAAATQRPQLSSCFLLTMSEDS 236 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L++ A+++K +GG+G + +R G +I GTNG S G++P L+V N+TA V+ Sbjct: 237 IEGIYDTLKQCALISKSAGGIGLNVHCIRAKGTYISGTNGISNGLVPMLRVYNNTARYVD 296 Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG KR GA YLE WH D+ EFLDL+KNTG + R DM A WIPDLFM+RV N Sbjct: 297 QGGNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEM 356 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+L P + L D +G+EFE Y YE+ E + R++ A LW ++ ETG Sbjct: 357 WSLMCPHDCPGLSDTWGEEFEKLYTGYEK-----EGRFIRQVKAQDLWFAIIESQVETGV 411 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FD 617 P++ +KD CN +S QQ++G + SNLCTEI SS +E AVCNL SI L ++ +D Sbjct: 412 PYMLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVKQDKTYD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + KL +T R L+ +ID+N + + +AK+SN HR IG+G+ G A L+ PY S Sbjct: 472 FAKLKEVAKTVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYESE 531 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I + A+ AS ELA G Y +++GS +G+ + Sbjct: 532 EAQKLNQQIFETIYYGALEASCELAARDGPYETYEGSPVSKGILQYEMWNKEP------- 584 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 T W ELK+++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG Sbjct: 585 ---TDLWNWAELKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSG 641 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+ +L LWD M +++ ++GSI I IP +++ ++ T +EI I Sbjct: 642 EFQVVNHHLLQDLTNMGLWDLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTCI 701 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +IDQ+QS N+++ EP+ KL I+ W MGLKT YYLR++ A + + T+ Sbjct: 702 KMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTV 761 Query: 917 KGVD---------GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +++ + + + S + EC +C Sbjct: 762 DKTKLQNGNESNVSRMSNENGSFAERNRRMAEMVCSLENKDECMMC 807 >gi|47225021|emb|CAF97436.1| unnamed protein product [Tetraodon nigroviridis] Length = 846 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 279/756 (36%), Positives = 428/756 (56%), Gaps = 31/756 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AEISATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNRCH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ + G + L Y L ING E PQ M Sbjct: 113 SPMVSKETLDIVLQNRDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIHQND---IDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGHSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L++ +G+EFE Y +YE+ E +V R + A +W ++ ETG P+ Sbjct: 350 LMCPDECPGLNECWGEEFEKLYTSYEK-----EGRVKRVVKAQQVWHAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYD 619 + +KD CN +S QQ++G + SSNLCTEI +SS+E AVCNL SI L + FD+ Sbjct: 405 MLYKDACNRKSNQQNLGTIKSSNLCTEIVEYTSSDEVAVCNLASIALNMYVTPECTFDFH 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA+ + VR L+ +IDIN + + +A++SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAAVTKVVVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS +LA E G Y S++GS +GV D G Sbjct: 525 QLLNTQIFETIYYAALEASCQLAAELGPYESYEGSPVSKGVLQYDMWGKTPTEL------ 578 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W +LK+R+ G+RNS +A PTA+ A I G ++SI+ N+Y + +SG+F Sbjct: 579 ----WDWQQLKERIARHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN L+ +L +R LW+E M + L H+GS+ NI+ IP+D+K+++ T +EI +I+ Sbjct: 635 QIVNPHLLKDLTERGLWNEDMKNQLIAHNGSVQNIDGIPNDVKQLYKTVWEISQKTVIKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 A+ R +IDQ+QS+N+++ EP+ KL ++ W Sbjct: 695 AADRGAFIDQSQSMNIHIAEPNYGKLTSMHFYGWKQ 730 >gi|195146786|ref|XP_002014365.1| GL19156 [Drosophila persimilis] gi|194106318|gb|EDW28361.1| GL19156 [Drosophila persimilis] Length = 821 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 291/835 (34%), Positives = 435/835 (52%), Gaps = 51/835 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 KL ++ DG + ++ +++ C L V + + +Y G++ +L+ Sbjct: 11 KLFVVKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVSITLQVINGLYCGVTTQELDNL 70 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 S L +YA + AR + L +E +K + L+ Sbjct: 71 AAEISAGLTCNHADYAILAARIAVSNLHKET--------KKVFSDVFEDLFKNINRETNT 122 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 H +++ + L + + Y+RDF + Y G + L Y L ING E PQ Sbjct: 123 ASPMVSEFHYNIVKNNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKINGKIAERPQHML 182 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380 MRVA+G+ + AVE YNLLS +F ++PTLF + T PQLSSCFL T+ D + Sbjct: 183 MRVALGIHGDD---IDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMNSDSI 239 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF ++++ A+++K +GG+G + +R G I GTNG S G++P L+V N+ A V+Q Sbjct: 240 EGIFKSVEQCALISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQ 299 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA YLE WH DV EFLDL++NTG + R D+ A WIPDLFMKRV N W Sbjct: 300 GGGKRPGAFAIYLEPWHSDVFEFLDLKRNTGKEENRARDLFYALWIPDLFMKRVEANESW 359 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P + L D++G++FE Y YE+ E + R + A ALW ++ ETG+P Sbjct: 360 SLMCPHKCPGLQDVWGEKFEELYVKYEQ-----EGRANRTVEAQALWFAIIESQVETGNP 414 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDY 618 ++ FKD CN +S QQ+VG + SNLCTEI S+ +E AVCNL SI L +D+ Sbjct: 415 YMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNMFVTPEKTYDF 474 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL +T + L+ +IDIN + + +AKKSN HR IG+G+ G AL L+ PY S E Sbjct: 475 KKLKEVTKTVAKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGLADALILMRFPYESEE 534 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I F A+ AS ELA+E G Y +++GS +G+ D Sbjct: 535 AGLLNQQIFETIYFGALEASCELAEEFGVYETYEGSPVSKGILQYDMWDKTP-------- 586 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T+ W LK+ +K G+RNS +A PTA+ A I G ++S +P N+Y + +SG+ Sbjct: 587 --TNLWDWQSLKEDIKKHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGE 644 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN L+ +L + DLWD+ M + + GSI +IE IP ++ ++ T +EI I+ Sbjct: 645 FQVVNHHLLRDLTELDLWDDEMKNKIISSRGSIQDIETIPQKVRDLYKTVWEISVKSTIK 704 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+++ EP+ KL I+ +W GLKT YYLR++ A + + T+ Sbjct: 705 MAADRGAFIDQSQSFNVHVAEPNYGKLTSIHFFSWKAGLKTGMYYLRTKPAANAIQFTVD 764 Query: 918 GV-------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 D N + + H + S + C C Sbjct: 765 KKQAASALNDLNGSFNKSTLLDESTNNSHHIESDRERHMAEMVCSLENKDACLSC 819 >gi|4151066|emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum] Length = 808 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 287/834 (34%), Positives = 446/834 (53%), Gaps = 53/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQEAVHFDKITARLKKLSYGLSPDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + P+K+ ++ +Y R + Sbjct: 61 AETAAAMTANHPDYACLAARIAVSNLHK--------TPKKSFSETIKDMYYHVSERSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L I G +E PQ M Sbjct: 113 APLVSDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ + + ++ Y+L+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVSVGIH---KDDIESVIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YL+ WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLDPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G++FE Y NYE+ E K + + A LW ++L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGEDFEKLYINYEK-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L + Sbjct: 405 MLYKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPAETAVCNLASIALPRYVREKGVPSES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA L+ +ID+N + +E AK+SN HR IG+G+ Sbjct: 465 QPSKLVGSRGSKNRYFDFDKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL + + S EA ++ + E I +HA+ AS ELA + G Y ++ GS +G+ Sbjct: 525 QGLADTFMLLGMAFDSREAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ + + W L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 IQPDMWGVTP----------SDKWDWVALREMITKNGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+ +L + LW A+ + + Y DGS+ I IPD+ Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLYDLTEMGLWSPALKNRIIYEDGSVQKIPEIPDE 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK+I+ +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ W GLKT Sbjct: 695 LKEIYKNVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSRGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ L P T + T + S T+ +C C Sbjct: 755 MYYLRSRAAADAIKFTVD--TAMLKEKPKTAVDDDTKMAQMVCSLTNREDCLSC 806 >gi|1710391|sp|P50648|RIR1_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase R1 subunit gi|497904|gb|AAA50171.1| ribonucleotide reductase large subunit [Plasmodium falciparum] Length = 806 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 290/830 (34%), Positives = 437/830 (52%), Gaps = 47/830 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + ++ ++ GL + V V MY G+ +L+ Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSGIKTCELDELAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + P+++ + AR + L + V + + ++ P I + Sbjct: 61 QTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDVRGRP---ASLISKE 117 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 V +L L ++ Y RDF ++Y G + L Y L IN IE PQ MR Sbjct: 118 VYDFILLHK------DRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMR 171 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 V++G+ + + +K A+E Y+L+S +F +TPTLFNSGT PQ+SSCFL ++ D + G Sbjct: 172 VSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEG 228 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V NDTA V+QGG Sbjct: 229 IFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGG 288 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFMKRV +N WTL Sbjct: 289 GKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTL 348 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L + +G+EFE Y YE + + + A LW +L ETG P++ Sbjct: 349 MCPNECPGLSETWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAILQSQIETGVPYM 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYD 619 +KD CN +S Q+++G + SNLC EI +S +E AVCNL SI L +F++ Sbjct: 404 LYKDSCNAKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFK 463 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + R LD +I+ N + +++AK SN HR IG+G+ G LL PY S A Sbjct: 464 KLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAA 523 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 E+ E + + A+ SVELA G Y S++GS QG+ D + + Sbjct: 524 KELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNK------ 577 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 WDELK +++ G+RNS +A PTA+ + I G ++S +P N+Y + +SG+F Sbjct: 578 ---YWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L R LWDE M L H+GSI I IPDDLK+++ T +EI +I+ Sbjct: 635 FVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++AT K T+ Sbjct: 695 AADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDT 754 Query: 919 VDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEVC 953 K V+ ST S + C +D +C +C Sbjct: 755 HVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804 >gi|156541405|ref|XP_001600772.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 797 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 271/823 (32%), Positives = 429/823 (52%), Gaps = 45/823 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 K+ ++ +G N ++ + + C GL + + +Y G+ +L+ Sbjct: 6 KMHVLKRNGFKQEVNFDKITQRIRKLCHGLNMDYIDPLAITQCVINGLYPGVKTVELDNL 65 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + T+ K P+YA + AR ++ L +E +K M LY E Sbjct: 66 AAEIAATMTTKHPDYAILAARIVISSLHKE--------NRKTFSEVMDDLYKVIDPITKE 117 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + +++ L + + Y+RDF F Y G + L Y ING +E PQ Sbjct: 118 HKPMISEEYNNIIQKHKDRLNSAIDYDRDFVFNYFGFKTLEKSYLFRINGQVVERPQDML 177 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL------SSCFLTT 375 MRVA+ L E ++ +E YN S +F ++PTLF P S CF+ T Sbjct: 178 MRVAVALH---KEDLEKVIETYNYTSERYFTHASPTLFFCMYYTPTNVQVKNTSDCFILT 234 Query: 376 V-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D + GIF L+ A+++K +GG+G +R G I NG + G++P ++V N+T Sbjct: 235 MIEDSIEGIFETLKRCAIISKSAGGIGISVHNIRAKGTAIASNNGFANGLVPMIRVFNNT 294 Query: 435 AVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 ++QG KR GA YLE WH D+ EFLDL+KN G + R ++ A WIPDLFM+RV Sbjct: 295 VRFIDQGGNKRPGAFALYLEPWHADIFEFLDLKKNIGKEEYRARELFYALWIPDLFMQRV 354 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 N W+L P E L D++G EF Y YE E + R+I A LW +L Sbjct: 355 LDNEKWSLMCPHECPGLPDVWGDEFNKLYIKYEE-----EKRYKRQIVARDLWTAILKAQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHF 611 ETG P++ +KD CN +S QQ++G + SSNLCTEI SS E AVCNL SI N+ Sbjct: 410 VETGTPYMLYKDHCNRKSNQQNLGTIKSSNLCTEIIQYSSPNEVAVCNLASIAVNMFVDV 469 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +++ KL ++T + LD +ID+N + + +A+KSN HR +G+G+ G A L+ Sbjct: 470 ETQYYNFLKLKEVVKTVAKNLDKIIDLNHYPLIEAEKSNLMHRPVGIGVQGLADAFLLMR 529 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 P+ S EA ++ + E + F A+ AS ELA+E G YSS+ GS +G+ D + Sbjct: 530 YPFESKEAQQLNIQIFETLYFGALEASCELAKENGPYSSYNGSPVSKGILQYDMWNVTP- 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 T+ W LK ++ G+RNS +A PTA+ A I G ++S++P N+Y Sbjct: 589 ---------TNLWDWAALKLKIAKYGVRNSLLLAPMPTASTAQILGNNESVEPYTSNIYT 639 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F +VN L+N+L +R+LWD+ M +++ ++GSI N+ I DLK+++ T +EI Sbjct: 640 RRVLSGEFIIVNPHLLNDLTKRNLWDDEMKNEIIANNGSIQNVGHITQDLKELYKTVWEI 699 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 +++ A+ R +IDQ+QS+N+++ +P+ +KL ++ W GLKT YYLR++ A + Sbjct: 700 PQKIILKMAADRGAFIDQSQSVNVHMAKPTTEKLTSMHFYGWKAGLKTGMYYLRTKPAAN 759 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + T+ + +A S+T + C +C Sbjct: 760 ALQFTVNKSLLRPHATEEVKEKSNTIMENK------EDACMMC 796 >gi|19115403|ref|NP_594491.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces pombe 972h-] gi|1350600|sp|P36602|RIR1_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase gi|1067207|emb|CAA91952.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces pombe] Length = 811 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 287/835 (34%), Positives = 448/835 (53%), Gaps = 52/835 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L ++ +K +Q L+ + + Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPKTDKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L I+G E PQ M Sbjct: 113 APMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E + A+E YNL+S +F ++PTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVAVGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P ++V N+TA V+QG Sbjct: 230 GIYDTLKMCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA AYLE WH DV +FL+LRK G++ R +M A WIPDLFM+RV +N WT Sbjct: 290 GNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P+E L D++G EF YE YE+ E + R + A +W +L ETG+P+ Sbjct: 350 FFCPNEAPGLADVWGDEFVALYEKYEK-----ENRGRRSLPAQKVWYAILQSQVETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S Q++VG + SNLCTEI SS +E AVCNL S+ L + ++++ K Sbjct: 405 MLYKDSCNRKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ R L+ +ID+N + + +A++SN HR +GLG+ G A L +P+ S A Sbjct: 465 LHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I A+ AS E+AQ G Y S++GS QG+ D +N Sbjct: 525 KLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWN----------VNP 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W ELK+++ G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 575 TDLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +L+ +L +RDLW+E M + L DGSI I IP DLK ++ T +EI +I+ A Sbjct: 635 IVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QSLN++L +PS K+ ++ W GLKT YYLR+ +A++ K T+ V Sbjct: 695 ADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754 Query: 920 ---------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +++A P + + + S + CE+C Sbjct: 755 ALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809 >gi|170088813|ref|XP_001875629.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82] gi|164648889|gb|EDR13131.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82] Length = 881 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 278/798 (34%), Positives = 421/798 (52%), Gaps = 31/798 (3%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +++ C GL + V + +Y G++ +L+ Sbjct: 4 VFKRGARKERVQFDKITARIQKLCYGLNENFVDPIEFTQKVVAGVYHGVTTVELDNLAAE 63 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ L K P+YA + AR + L +E + ++ LY + Sbjct: 64 TAAYLTTKHPDYAVLAARIAVSNLHKETKKNFSQV--------IKDLYEYVNPKNRRPAG 115 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 ++ + L + + Y RDF+F + G + L Y L +NG E PQ MRV Sbjct: 116 MISQEIYEIVRENAEALDSAIIYNRDFSFNFFGFKTLERSYLLRLNGRVAERPQHMIMRV 175 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383 A+G+ ++ ++ VE YNL+S +F ++PTLFN+GT HPQLSSCFL + DD + GI Sbjct: 176 AVGIHGRDIDRV---VETYNLMSERYFTHASPTLFNAGTPHPQLSSCFLVCMKDDSIEGI 232 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442 + L+ AM++K +GG+G +R G++I GTNG S G++P L+ + TA V+QG Sbjct: 233 YDTLKNCAMISKTAGGIGLSIHCIRATGSYIAGTNGYSNGIVPMLRAYDATARYVDQGGN 292 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR GA Y+E WH DV EFLDLRKN G + R D+ A WIPDLFMKRV N W+LF Sbjct: 293 KRPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLF 352 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P+E + L +++ EFE YE YE+ E + + I A LW +L ETG P++ Sbjct: 353 CPNEAAGLGEVHSAEFEALYEKYEK-----EGRARKSIPAQKLWYAILEAQIETGGPFMV 407 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD N +S Q+++G + SSNLCTEI SS EETAVCNL S+ L +N ++D+ KL Sbjct: 408 YKDHANSKSNQKNLGTIKSSNLCTEIIEYSSPEETAVCNLASLALPTFISNGKYDFQKLH 467 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + L+ +ID+N + I +A+ SN HR IG+G+ G L +P+ SP A E+ Sbjct: 468 DVTKVVAYNLNRIIDVNYYPIPEARLSNMRHRPIGVGVQGLADTFMALRMPFDSPAAKEL 527 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I A+ AS ELA+ G Y ++ GS G D G+ T Sbjct: 528 NIQIFETIYHGALEASSELAERDGPYETWMGSPAQLGQLQYDLWGVTP----------TG 577 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W LK+++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F VV Sbjct: 578 LWDWTSLKEKIARTGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVV 637 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 +L+ EL LWD+ M + + H+GS+ NI IPDD+K I+ T +EI +++ A+ Sbjct: 638 CPWLLRELVDLGLWDDNMKNMIIAHNGSVQNIPTIPDDVKAIYKTVWEISQKKVLDLAAD 697 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921 R +I Q+QSLN++L P+ +L ++ W GLKT YYLR+R A S + T+ Sbjct: 698 RGAFICQSQSLNVHLQAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAASAIQFTVDQSLL 757 Query: 922 KLNAVPVTDPNSSTHSLG 939 K TD Sbjct: 758 KEVKQQKTDAAKVKAQAN 775 >gi|126131606|ref|XP_001382328.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces stipitis CBS 6054] gi|126094153|gb|ABN64299.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces stipitis CBS 6054] Length = 861 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 265/807 (32%), Positives = 421/807 (52%), Gaps = 35/807 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V+ C GL V + + +Y G++ +L+ Sbjct: 1 MYVNKRDGRKEPVRFDKITARVQRLCYGLDPNHVDAVAITQRVISGVYHGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ ++ LY + Sbjct: 61 AETAAYMTTIHPDYAILAARIAVSNLHKQTTKQYSSVSKE--------LYDYINPKTGLH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 SPMISKETYDIILKHTDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + EK +E YNL+S F +PTLFN+GT PQ+SSCFL + DD + Sbjct: 173 RVAIGIHGDDIEKV---IESYNLMSQRLFTHGSPTLFNAGTPSPQMSSCFLVAMKDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G +R GA+I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV QNA WT Sbjct: 290 GNKRPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNADWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP+E L D+YG EF + E + I A LW +L ETG P+ Sbjct: 350 LFSPNEAPGLADVYGDEF-----EELYERYERENRGRSTIKAQKLWYSILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQF 616 + +KD CN +S Q+++G++ SSNLC EI SS EE AVCNL SI L ++ + Sbjct: 405 MLYKDACNKKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDDSSLWY 464 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +++KL + + L+ +ID N + + +A++SN +R I LG+ G L +P+ S Sbjct: 465 NFEKLHEVTKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIALGVQGLADTFMALRLPFDS 524 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 +A E+ + E I A+ +S+ELAQ G Y S++GS +G+ D Sbjct: 525 QQARELNIQIFETIYHAAVESSIELAQIEGPYESYEGSPASKGLLQYDLWDRKPTEL--- 581 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD LK+ + G+RNS +A PTA+ + I G ++ +P N+Y + ++ Sbjct: 582 -------WDWDTLKQNLSKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLA 634 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN +L+ +L +W++AM +++ ++GS+ + +PD++K ++ T +EI + Sbjct: 635 GEFQIVNPYLLRDLVDLGIWNDAMKNNIIANNGSVQGLANVPDEIKALYKTVWEISQKHI 694 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 I+ A+ R +IDQ+QSLN+++ +P+ KL ++ W GLKT YYLR+++A + + T Sbjct: 695 IDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAAAAIQFT 754 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + K + I Sbjct: 755 VDKNSAKTAGNTIATLEKLNQRKYIAK 781 >gi|241672125|ref|XP_002411450.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] gi|215504101|gb|EEC13595.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] Length = 779 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 441/814 (54%), Gaps = 42/814 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ G + + ++ +++ C GL V ++ + +Y G++ +L+ Sbjct: 1 IFYIVSGGRRETVHFDKITSRIQKLCYGLNMDFVDPCLITQKVINGLYPGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L +E +K ++ LY + Sbjct: 61 AETAATMTTKHPDYAILAARIAISNLHKET--------KKVFSEVVEDLYNMVSEKTRLR 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + + Y+RDF + + G + L Y L ING +E PQ M Sbjct: 113 TPMISDETYKIVMENAEAFNSAIIYDRDFNYNFFGFKTLERSYLLKINGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + + YNL+S F ++PTLFNSGT PQLSSCFL + DD + Sbjct: 173 RVSVGIHGAD---VESVLNTYNLMSEKWFTHASPTLFNSGTPRPQLSSCFLLQMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVNIHCIRASGSYIAGTNGTSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV +FLDL+KNTG + R D+ A WIPDLFM+RV Q+ W+ Sbjct: 290 GNKRPGAFAMYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVEQDQMWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E LH++YG++FE Y YE GE + R++ A LW +L ETG P+ Sbjct: 350 LMCPHECPGLHEVYGEDFEKLYTKYE-----GEKRYRRQVQAQQLWYAILESQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S Q+++G + SNLCTE+ ++ +E AVCNL SI L FD+ K Sbjct: 405 MLYKDACNSKSNQKNLGTIKCSNLCTEVIEYTAPDEVAVCNLASIALNRFVHEGSFDFQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + + L+ +IDIN + I +A+KSN +HR IG+G+ G LL +P+ +A Sbjct: 465 LREVSQVITKNLNRIIDINFYPIPEAEKSNKSHRPIGIGVQGLADTFILLRLPFDCEKAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E I + A+ AS +LA+E G Y ++ G QG+ D G+ Sbjct: 525 LLNKQIFETIYYGALEASCDLAKELGPYETYPGCPVSQGILQYDMWGVTP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W LK R+ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 575 TDMWDWAALKARIAQYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ +L R LW+E + + L ++GS+ ++ IPDDLK+++ T +EI +++ A Sbjct: 635 VVNQHLLKDLTDRGLWNEDLKNSLIANNGSVQELD-IPDDLKELYRTVWEIPQKNILQMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R ++DQ+QSLN+++ +P+ KL ++ W +GLKT YYLR++ A S + T+ Sbjct: 694 ADRGAFVDQSQSLNVHIAQPNYGKLTSMHFFGWKLGLKTGMYYLRTKPAASAIQFTVDKT 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + S + EC +C Sbjct: 754 ----------ALRKKEQMNAVTCSLKNKDECLMC 777 >gi|255949828|ref|XP_002565681.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592698|emb|CAP99060.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255] Length = 863 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 275/810 (33%), Positives = 427/810 (52%), Gaps = 33/810 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL + + + + +Y G+ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHIDAAAITQKVISGVYQGVGTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSMV--------ISDLYHYVNPKNNKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 H ++ L + + Y+RDF + + G + L Y L ING+ E PQ M Sbjct: 113 APMISKEHYEIVMKHAEELNSAIVYDRDFNYNFFGFKTLERSYLLRINGTVAERPQHLLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA+G+ ++ EK A+E Y+L+S +F ++PTLFN+ T PQL+SCFL + D + Sbjct: 173 RVAVGIHGEDIEK---AIETYHLMSQKYFTHASPTLFNAATPQPQLASCFLVDMSADSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNVHRIRATGSYIGGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH DV EFLDLRKN G + R D+ A W PDLFMKRV N WT Sbjct: 290 GNKRPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG+EF+ Y YE+ E + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGEEFDALYAKYEQ-----EGRGRKTIKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + +KD CN +S Q+++G + SSNLCTEI S+ +E AVCNL S+ L ++D+ Sbjct: 405 MLYKDACNRKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDSARGEYDF 464 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ V L+ +IDIN + + +AKKSN HR I LG+ G A L +P+ SPE Sbjct: 465 GKLHEVVQVLVHNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSPE 524 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A++AS ++A++ G Y ++ GS QG+ D Sbjct: 525 ARQLNIQIFETIYHGALTASSDIAKKLGPYETYPGSPVSQGILQYDMWDRTP-------- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 T W LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 577 --TDLWDWASLKAKIAETGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 634 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+ +L LW + M + + GS+ NI IP D+K ++ T +EI +++ Sbjct: 635 FQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQ 694 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN++L EP+ KL ++ W MGLKT YYLR+ +A++ + T+ Sbjct: 695 MAADRGAYIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVD 754 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 + V G + Sbjct: 755 QEQLLVEDTNVARSKKRVGGTGASAYSAIP 784 >gi|71027825|ref|XP_763556.1| ribonucleotide-diphosphate reductase large subunit [Theileria parva strain Muguga] gi|68350509|gb|EAN31273.1| ribonucleotide-diphosphate reductase large subunit, putative [Theileria parva] Length = 898 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 275/803 (34%), Positives = 429/803 (53%), Gaps = 38/803 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESD 197 + + ++ G + ++ + + GL V + V MY G+ S+ Sbjct: 54 EAESKIMYVINRHGEKEDVSFDKILNRIRKLSLGLHSLVDAPRVTQSVINGMYTGIRTSE 113 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ + + P+Y+++ A ++ L + L + + Y F Sbjct: 114 LDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLNDFSEVIRTLHS------YKHVFN 167 Query: 258 RYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 A L+ + + +F + L ++ Y RDF ++Y G + L Y L NG + Sbjct: 168 TN------ASLISDDVFEFVMANKDRLNAEIDYSRDFQYDYFGFKTLERSYLLKTNGKIV 221 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRV+ G+ + E+ ++ Y+L+S +F +TPTLFN+GTRHPQ+SSCFL Sbjct: 222 ERPQHMIMRVSAGIHCGDLERT---IQTYHLMSQRYFTHATPTLFNAGTRHPQMSSCFLL 278 Query: 375 TVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + DD GIF L + A ++K +GG+G +R G++I GTNG S G++P LK+ N Sbjct: 279 DMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASGSYIRGTNGISNGIVPMLKIFNA 338 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKG+ YLE WH D+ + LDLRKN G + +R D+ A WIPDLFMKR Sbjct: 339 TAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHGAEDQRARDLFYALWIPDLFMKR 398 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N WTL PDE LH+++G EFE Y YE+Q + I A LW +L Sbjct: 399 VEANKNWTLMCPDECRGLHEVWGDEFERLYTQYEQQGL-----GRKTIPAQKLWFAILQS 453 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD CN +S QQ++G + SSNLC EI ++ +E AVCNL S+ L Sbjct: 454 QIETGTPYMLYKDACNAKSNQQNLGTIKSSNLCCEIVQFTNKDEVAVCNLASVALPKFVN 513 Query: 613 NNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 FD+ KL R L+ VID N + +++A+ SN HR +G+G+ G L+ Sbjct: 514 TQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQARVSNFRHRPMGVGVQGLADTFMLM 573 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 P+ S EA E+ E + + +S S++LA++ G Y +++GS +G+ D G Sbjct: 574 RYPFESDEARELNKRIFETMYYACLSESIDLARQLGTYETYEGSPASKGLLQFDLWGAKV 633 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + S WD+LK ++ G+RNS +A PTA+ + I G ++S +P N+Y Sbjct: 634 DN---------SLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIY 684 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VVN L+N+L + LW+E M L ++GS+ +I+ IP +K ++ T +E Sbjct: 685 YRRVLSGEFFVVNPHLLNDLIELGLWNETMKQKLIAYNGSLKHIDEIPQHIKDLYKTVWE 744 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +I+ A+ R +IDQ+QSLN+++++P+ KL ++ W GLKT YYLR++ AT Sbjct: 745 IKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPAT 804 Query: 910 SVEKSTLKGVDGKLNAVPVTDPN 932 K T+ +L + Sbjct: 805 DAIKFTVDASISQLAKNRAKPNS 827 >gi|557803|emb|CAA86157.1| rir3 [Saccharomyces cerevisiae] gi|323304492|gb|EGA58258.1| Rnr3p [Saccharomyces cerevisiae FostersB] Length = 885 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 267/816 (32%), Positives = 421/816 (51%), Gaps = 38/816 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 ++ ++ DG ++ + GL + + V +Y G++ +L+ Sbjct: 16 QMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + + P+YA + AR + L ++ K ++ L+ + Sbjct: 76 AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +++ + L + + Y+RDF + Y G + L Y L +NG E PQ Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+Q Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA +LE WH D+ +F+D+RK G + R D+ A WIPDLFMKRV ++ W Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPW 364 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLFSP L D++G EFE Y YER+ + I A LW +L ETG P Sbjct: 365 TLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTP 418 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------AN 613 ++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI L A Sbjct: 419 FMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKT 478 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 +++++L + L+ VID N + + +A+ SN HR I LG+ G +L +P Sbjct: 479 ASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLP 538 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S EA + + E I + AS ELAQ+ G YS+F+GS +G+ D Sbjct: 539 FESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP--- 595 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 W+ L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 596 -------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRR 648 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F VVN +L+ +L +WD++M L +GSI + +P +LK+++ T +EI Sbjct: 649 VLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQ 708 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT YYLR+++A++ Sbjct: 709 KTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAI 768 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 + T+ A + + + +P Sbjct: 769 QFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSE 804 >gi|225438479|ref|XP_002278202.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296082544|emb|CBI21549.3| unnamed protein product [Vitis vinifera] Length = 808 Score = 680 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 295/834 (35%), Positives = 449/834 (53%), Gaps = 53/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR ++ L + +K+ ++ +Y + R + Sbjct: 61 AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKEMYNHFNERSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L I G +E PQ M Sbjct: 113 APLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KDDIDSAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G+EF Y YER E K + + A LW ++L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGQEFVDLYTQYER-----EGKAKKVVQAQNLWFEVLKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTEI +S++ETAVCNL SI L + Sbjct: 405 MLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVPMES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA L+ +ID+N + +E AK+SN HR IGLG+ Sbjct: 465 NPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYPVETAKRSNLRHRPIGLGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL + + SPEA ++ + E I +HA+ AS ELA G Y ++ G +G+ Sbjct: 525 QGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ +SR WD L+K + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWGVTP----------SSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW + + + Y +GS+ + IP+D Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPED 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 695 LKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ L T + T + S T+ EC C Sbjct: 755 MYYLRSRAAADAIKFTVDTS--ILQERTKTADDDDTKMAQMVCSLTNREECMAC 806 >gi|156836703|ref|XP_001642400.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM 70294] gi|156112918|gb|EDO14542.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM 70294] Length = 874 Score = 680 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 278/815 (34%), Positives = 421/815 (51%), Gaps = 37/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + C GL + V +Y+G++ +L+ Sbjct: 1 MYVYKRDGRKEPVRFDKITARISRLCYGLDPNHIDPVKVTQRIITGVYEGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ K + LY + Sbjct: 61 AETAAYMTTVHPDYATLAARLAISNLHKQT--------TKLFSQVVDDLYHYINPENSKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ L + + Y+RDF F Y G + L Y L + G E PQ M Sbjct: 113 APLVSEEVYNIVMEHKDELNSAIVYDRDFQFNYFGFKTLERSYLLRMKGEVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-Y 381 RVA+G+ E + A+E YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD Sbjct: 173 RVAIGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSLE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIFDTLKECAMISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA+ YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGDWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E L ++YG+EFE Y Y E + + I A LW +L ETG P+ Sbjct: 350 LFSPSEAPGLEEVYGEEFEALYNRYVA-----EGRGRKTIKAQKLWYSILEAQTETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN +S +++G + SSNLC EI S+ +ETAVCNL SI L A + Sbjct: 405 MLYKDACNTKSNHKNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEVSEDGRSQ 464 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++ KL + R L+ VID N + +E+A+ SN HR I LG+ G LL IP+ Sbjct: 465 TYNFKKLHEISKVVTRNLNKVIDRNYYPVEEARNSNFRHRPIALGVQGLADTFMLLRIPF 524 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA E+ E + A+ AS ELA++ G Y S+ S QGV D Sbjct: 525 ESKEAKELNTHIFETMYHAALEASCELAEKEGYYESYPNSPVSQGVLQYDMWNRKP---- 580 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + W LK+++K G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 581 ------SDLWDWATLKEQIKKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRV 634 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F +VN +L+ +L +WDE+M L +GSI N+ IP +LK ++ T +EI Sbjct: 635 LSGEFQIVNPYLLRDLVDLGIWDESMKQHLITDNGSIQNLPNIPQELKDLYKTVWEISQK 694 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I+ A+ R +IDQ+ S+N+++ P+ KL ++ W GLKT YYLR+++A++ + Sbjct: 695 TIIDMATDRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQ 754 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 T+ A D + P Sbjct: 755 FTIDKSVADQAAKSTADLENLKRPTYYPREFIEGD 789 >gi|170579939|ref|XP_001895047.1| ribonucleoside-diphosphate reductase large chain [Brugia malayi] gi|158598142|gb|EDP36102.1| ribonucleoside-diphosphate reductase large chain, putative [Brugia malayi] Length = 1061 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 276/816 (33%), Positives = 439/816 (53%), Gaps = 41/816 (5%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG + + ++ + + C GL V + + +Y G++ +L+ Sbjct: 12 YVVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAA 71 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + +I K P+YA + +R + L ++ + K ++ LY + Sbjct: 72 EIAADMITKHPDYATLASRITVSNLHKKTEKSFSKLSRR--------LYNATHPKSGRHM 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + +ERD+ + Y GL+ L Y L ING E PQ MR Sbjct: 124 PLISKELFDIIQNNANLLDSAIVHERDYLYTYFGLKTLERSYLLQINGELAERPQHMLMR 183 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382 VA+G+ E + A+E YNL+S F +TPTLFNSGT PQ+SSCFL T+ D + G Sbjct: 184 VALGIHG---EDIEAALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFEDSIEG 240 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 IF L++ A+++K +GG+G + +R G+ I GTNG S G++P L+V N+ A V+QG Sbjct: 241 IFETLKKCALISKSAGGIGLNVHCIRASGSAIAGTNGVSNGLVPMLRVFNNAARYVDQGG 300 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH D+ +FL+LRKN GD+ R D+ W+PDLFM+RV + W+L Sbjct: 301 NKRPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIWSL 360 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E L D +G+ FE Y YE E + +++ A LW ++ ETG P++ Sbjct: 361 MCPAECPGLEDSWGEAFEKLYTQYEE-----EGRYRKQVPARKLWETIVFTQIETGMPYM 415 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDK 620 +KD CN ++ QQ++G + SNLCTE+ L SS EE AVCNL SI L + ++D+ Sbjct: 416 VYKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALGRFVTSEMKYDFKM 475 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + V+ L+ VID N + I +A++SN HR IG+G+ G A L+ P+ S +A Sbjct: 476 LHEVTKVVVKNLNKVIDRNYYPIPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKAR 535 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ E I + A+ AS +LA+E+G Y S++GS +G+ D G+ Sbjct: 536 DLNKRIFETIYYAALEASCDLAKEQGPYESYEGSPISKGILQFDMWGVTP---------- 585 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T + W L++++ G+RNS ++ PTA+ A I G ++SI+P N+Y ++ +SG F Sbjct: 586 TDQCDWGTLREKIAKFGIRNSVLLSPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQ 645 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + N L+N+L DLWD+ M ++ + GSI NIERIP +++ ++ T +E+ +I+ A Sbjct: 646 IFNMHLMNDLMHLDLWDDDMKLEIIKNKGSIQNIERIPQEIRDLYRTVWEMSQRDIIDMA 705 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL---------MGLKT-TYYLRSRSATS 910 + R +IDQ+QSLN+++ P+ + ++ W GLKT YYLR+R A Sbjct: 706 ADRGAFIDQSQSLNIFIARPNYGNITSMHFYGWQKVCTAFLMYKGLKTGMYYLRTRPAVD 765 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 + T+ K D NS + S IP++ + Sbjct: 766 AVQFTVDKTRLKEYDSVNGDKNSKSSSSSIPATTSE 801 >gi|6322123|ref|NP_012198.1| Rnr3p [Saccharomyces cerevisiae S288c] gi|730516|sp|P21672|RIR3_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 2; AltName: Full=Ribonucleotide reductase DNA damage-inducible regulatory subunit 2; AltName: Full=Ribonucleotide reductase R1 subunit 2; AltName: Full=Ribonucleotide reductase large subunit 2 gi|151943097|gb|EDN61432.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces cerevisiae YJM789] gi|285812585|tpg|DAA08484.1| TPA: Rnr3p [Saccharomyces cerevisiae S288c] Length = 869 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 267/815 (32%), Positives = 420/815 (51%), Gaps = 38/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ + GL + + V +Y G++ +L+ Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ K ++ L+ + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF + Y G + L Y L +NG E PQ M Sbjct: 113 APMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 173 RVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA +LE WH D+ +F+D+RK G + R D+ A WIPDLFMKRV ++ WT Sbjct: 290 GNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP L D++G EFE Y YER+ + I A LW +L ETG P+ Sbjct: 350 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI L A Sbjct: 404 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++++L + L+ VID N + + +A+ SN HR I LG+ G +L +P+ Sbjct: 464 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I + AS ELAQ+ G YS+F+GS +G+ D Sbjct: 524 ESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 579 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 W+ L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 580 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN +L+ +L +WD++M L +GSI + +P +LK+++ T +EI Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 693 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT YYLR+++A++ + Sbjct: 694 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 T+ A + + + +P Sbjct: 754 FTIDQEVADQAATHIASVSELDRPVYVPKGTKFSE 788 >gi|259147192|emb|CAY80445.1| Rnr3p [Saccharomyces cerevisiae EC1118] Length = 885 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 267/810 (32%), Positives = 421/810 (51%), Gaps = 38/810 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 ++ ++ DG ++ + GL + + V +Y G++ +L+ Sbjct: 16 QMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + + P+YA + AR + L ++ K ++ L+ + Sbjct: 76 AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +++ + L + + Y+RDF + Y G + L Y L +NG E PQ Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+Q Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA +LE WH D+ +F+D+RK G + R D+ A WIPDLFMKRV ++ W Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGSW 364 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLFSP L D++G EFE Y YER+ + I A LW +L ETG P Sbjct: 365 TLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTP 418 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------AN 613 ++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI L A Sbjct: 419 FMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKT 478 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 +++++L + L+ VID N + + +A+ SN HR I LG+ G +L +P Sbjct: 479 ASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLP 538 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S EA + + E I + AS ELAQ+ G YS+F+GS +G+ D Sbjct: 539 FESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP--- 595 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 W+ L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 596 -------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRR 648 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F VVN +L+ +L +WD++M L +GSI + +P +LK+++ T +EI Sbjct: 649 VLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQ 708 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT YYLR+++A++ Sbjct: 709 KTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAI 768 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + T+ A + + + +P Sbjct: 769 QFTIDQEVADQAATHIASVSELDRPVYVPK 798 >gi|4151068|emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum] Length = 808 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 294/834 (35%), Positives = 445/834 (53%), Gaps = 53/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG + + ++ +++ GL + +V + +Y G++ S L+ Sbjct: 1 MYVWKRDGRQETVHFDKITARLKKLSYGLSPEHCDPVLVSQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L P+YA + AR + L + +K+ ++ +Y R + Sbjct: 61 AETAAALTANHPDYASLAARIAVSNLHKNT--------KKSFSETVKDMYNHISERSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L ING+ +E PQ M Sbjct: 113 APLISDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKINGNVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ + + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVSVGIH---KDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +RG G++I GTNG S G+IP L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRGTGSYIRGTNGTSNGIIPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLD+RKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHSDIFEFLDMRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G++FE Y YER E K + + A LW ++L ETG P+ Sbjct: 350 LFCPSEAPGLADCWGEDFEKLYTKYER-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L + Sbjct: 405 MLYKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKEVPDES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+ KLA L+ +ID+N + +E AK+SN HR IGLG+ Sbjct: 465 QPSKLVGSRGSKNRYFDFAKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGLGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL + + SPEA ++ + E I +HA+ AS ELA + G Y ++ GS +G+ Sbjct: 525 QGLADTFILLGMSFDSPEAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ R W L+ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWGVTPSDR----------WDWGVLRGMIAKNGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW + + + Y DGS+ I IP D Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNRIIYDDGSVQKIPEIPQD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 695 LKVIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ L P T + T + S ++ EC C Sbjct: 755 MYYLRSRAAADAIKFTVDTS--MLKEKPQTAVDDDTKMAQMVCSLSNRDECMAC 806 >gi|85001013|ref|XP_955225.1| ribonucleoside-diphosphate reductase large chain [Theileria annulata strain Ankara] gi|65303371|emb|CAI75749.1| ribonucleoside-diphosphate reductase large chain, putative [Theileria annulata] Length = 891 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 278/817 (34%), Positives = 434/817 (53%), Gaps = 38/817 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESD 197 + + ++ G + ++ + + GL V + V MY G+ S+ Sbjct: 54 EAESKIMYVINRHGEKEDVSFDKILNRIRKLSLGLHSLVDAPRVTQSVINGMYTGIRTSE 113 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ + + P+Y+++ A ++ L + L + + Y + Sbjct: 114 LDELAAQTCAYMAVTHPDYSRLAANITIDNLHKNTLNDFSEVIRVLHS------YKHVYN 167 Query: 258 RYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 A L+ + + +F + L ++ Y RDF ++Y G + L Y L NG + Sbjct: 168 TN------ASLISDDVFEFVMENKDRLNAEIDYSRDFQYDYFGFKTLERSYLLKTNGKIV 221 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ MRV+ G+ + E+ ++ Y+L+S +F +TPTLFN+GT+HPQ+SSCFL Sbjct: 222 ERPQHMIMRVSAGIHCGDLERT---IQTYHLMSQRYFTHATPTLFNAGTKHPQMSSCFLL 278 Query: 375 TVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + DD GIF L + A ++K +GG+G +R G++I GTNG S G++P LK+ N Sbjct: 279 DMQDDSLAGIFNTLSQCAFISKSAGGIGLAIHKIRASGSYIRGTNGISNGIVPMLKIFNS 338 Query: 434 TAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QGG KRKG+ YLE WH D+ + LDLRKN G + +R D+ A WIPDLFMKR Sbjct: 339 TAKYVDQGGGKRKGSFAIYLEPWHADIFKLLDLRKNHGSEDQRARDLFYALWIPDLFMKR 398 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N WTL PDE L++++G EFE Y YE+Q + I A LW +L Sbjct: 399 VEANKNWTLMCPDECRGLYEVWGDEFERLYTQYEQQGM-----GRKTIPAQKLWFAILQS 453 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD CN +S QQ++G + SSNLC EI +S +E AVCNL S+ L Sbjct: 454 QIETGTPYMLYKDACNSKSNQQNLGTIKSSNLCCEIVQFTSKDEVAVCNLASVALPKFVN 513 Query: 613 NNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 FD+ KL R L+ VID N + +++A+ SN HR +G+G+ G L+ Sbjct: 514 TQTRTFDFKKLYEICRVITYNLNKVIDRNYYPVKQARASNFRHRPMGVGVQGLADTFMLM 573 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 P+ S EA E+ E + + +S S++LA++ G Y S++GS +G+ D G Sbjct: 574 RYPFESDEARELNKRIFETMYYACLSESIDLARQYGTYESYEGSPASKGLLQFDLWGAKV 633 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + S WD+LK ++ G+RNS +A PTA+ + I G ++S +P N+Y Sbjct: 634 DN---------SLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIY 684 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VVN L+N+L LW+E M L ++GS+ +I+ IP +K+++ T +E Sbjct: 685 YRRVLSGEFFVVNPHLLNDLIDLGLWNETMKQKLIAYNGSLKHIDEIPSHIKELYKTVWE 744 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +I+ A+ R +IDQ+QSLN+++++P+ KL ++ W GLKT YYLR++ AT Sbjct: 745 IKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPAT 804 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 K T+ +L V NS + S + Sbjct: 805 DAIKFTVDASISQLAKSRVKPANSIMSDGNMTSIMSD 841 >gi|323337188|gb|EGA78442.1| Rnr3p [Saccharomyces cerevisiae Vin13] Length = 885 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 266/810 (32%), Positives = 420/810 (51%), Gaps = 38/810 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 ++ ++ DG ++ + GL + + V +Y G++ +L+ Sbjct: 16 QMYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + + P+YA + AR + L ++ K ++ L+ + Sbjct: 76 AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +++ + L + + Y+RDF + Y G + L Y L +NG E PQ Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+Q Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA +LE WH D+ +F+D+RK G + R D+ A WIPDLFMKRV ++ W Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPW 364 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLFSP L D++G EFE Y YER+ + I A LW +L ETG P Sbjct: 365 TLFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTP 418 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------AN 613 ++ +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI L A Sbjct: 419 FMVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKT 478 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 +++++L + L+ VID N + + +A+ SN HR I LG+ G +L +P Sbjct: 479 ASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLP 538 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S A + + E I + AS ELAQ+ G YS+F+GS +G+ D Sbjct: 539 FESEXAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP--- 595 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 W+ L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 596 -------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRR 648 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F VVN +L+ +L +WD++M L +GSI + +P +LK+++ T +EI Sbjct: 649 VLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQ 708 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT YYLR+++A++ Sbjct: 709 KTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAI 768 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + T+ A + + + +P Sbjct: 769 QFTIDQEVADQAATHIASVSELDRPVYVPK 798 >gi|68525530|ref|XP_723625.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii yoelii str. 17XNL] gi|23477980|gb|EAA15190.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii yoelii] Length = 847 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 290/841 (34%), Positives = 438/841 (52%), Gaps = 47/841 (5%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192 + ++ G + ++ ++ GL + V V MY G Sbjct: 31 KRTPSGKPIQTMYVLNRKGEEEDISFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + +L+ + + P+++ + AR + L + + K + ++ Sbjct: 91 IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKNTSDDIAKVAEALYSYKDIRGR 150 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 I + V ++ L ++ Y RDF ++Y G + L Y L IN Sbjct: 151 S---ASLISKEVYDFIM------EHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNK 201 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE PQ MRV++G+ + + ++A+E Y+L+S +F +TPTLFNSGT PQ+SSCF Sbjct: 202 IIERPQHLLMRVSIGIHIDD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L ++ D + GIF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V Sbjct: 259 LLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFM Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV +N WTL P+E L + +G+EFE Y YE + + + A LW +L Sbjct: 379 KRVKENRNWTLMCPNECPGLSESWGEEFEKLYTKYEEENL-----GKKTVLAQDLWFAIL 433 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL SI L Sbjct: 434 QSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493 Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +FD+ KL + R LD +I+ N + I++A+KSN HR IG+G+ G Sbjct: 494 VDREKKEFDFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQGLADTFM 553 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 LL PY S EA E+ E + + A+ SVELAQ G Y S+KGS QG+ D + Sbjct: 554 LLRYPYESDEAKELNKRIFETMYYAALEMSVELAQIHGPYESYKGSPASQGILQFDMWNV 613 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + WD LKK++ G+RNS +A PTA+ + I G ++S +P N Sbjct: 614 KVDNK---------YWDWDLLKKKISMHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP DLK+++ T Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTV 724 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++ Sbjct: 725 WEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784 Query: 908 ATSVEKSTLKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEV 952 AT K T+ K V+ ST S ++C +D C + Sbjct: 785 ATDAIKFTVDTQVAKNAEKLKNADGVAITREVSRETISTESTVTQNACPLRRNNDEPCLM 844 Query: 953 C 953 C Sbjct: 845 C 845 >gi|296421726|ref|XP_002840415.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636631|emb|CAZ84606.1| unnamed protein product [Tuber melanosporum] Length = 884 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 272/808 (33%), Positives = 428/808 (52%), Gaps = 35/808 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ D ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MYVVKRDNRKERVQFDKITARVSRLCYGLDSEHVDAATITQKVISGVYQGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + + LY + Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQFSQV--------ISDLYHYVNPKNGRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + L + + Y++DF + Y G + L Y L ING E PQ M Sbjct: 113 ASMISTETYETVMRHASELDSAIIYDKDFNYNYFGFKTLERSYLLRINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA+G+ E + +E YNL SS +F ++PTLFN+GT PQLSSCFL T+ D + Sbjct: 173 RVAVGIHG---EDVDKVIETYNLTSSKYFTHASPTLFNAGTPSPQLSSCFLVTMKGDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N TA V+QG Sbjct: 230 GIYDTLKTCAMISKTAGGIGLNIHCIRATGSYIAGTNGSSNGIVPMLRVFNHTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA Y+E WH D+ +F+DLRKN G + R D+ A WIPDLFMKRV NA W+ Sbjct: 290 GNKRPGAFAIYMEPWHADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANAEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D++G+EFE Y YE + + I A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVWGEEFEALYNKYE----NTKDLARKTIKAQKLWYHILEAQTETGNPF 405 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDY 618 + +KD CN +S QQ++G + SSNLCTEI S+ +E AVCNL S+ L + + +D+ Sbjct: 406 MLYKDACNRKSNQQNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDVQRGEYDF 465 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + ++ L+ +ID+N + + +A+KSN HR +G+G+ G A L +P+ SP+ Sbjct: 466 AKLHEVTKVVIKNLNKIIDVNFYPVPEARKSNTRHRPVGVGVQGLADAFLALRMPFESPQ 525 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A+ AS ELA+ +G Y +++GS +G D + Sbjct: 526 AKQLNIQIFETIYHAAVEASTELAEIQGPYPTYEGSPASKGQLQYDLWNVTPTEL----- 580 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 WDELK++VK G+RNS +A PTA+ + I G ++ +P N+Y + ++G+ Sbjct: 581 -----WDWDELKEKVKKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGE 635 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F +VN +L+ +L LW + M + + +GSI NI IPDD+K ++ T +EI +IE Sbjct: 636 FQIVNPWLLKDLVDMGLWSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWEISQKKVIE 695 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 +IDQ+QSLN+++ P+ KL ++ W +GLKT YYLR+++A + + T+ Sbjct: 696 VCGA---FIDQSQSLNIHIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAAAAIQFTVD 752 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 K+ V + L + Sbjct: 753 QEALKVADTNVARALPNKKRLPNTGYSS 780 >gi|323098474|gb|ADX22712.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] Length = 771 Score = 678 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 274/814 (33%), Positives = 439/814 (53%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 GKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G + G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GXXRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS +LA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR+ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PQVVCDSEICTSC 769 >gi|190406283|gb|EDV09550.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|256269776|gb|EEU05042.1| Rnr3p [Saccharomyces cerevisiae JAY291] Length = 869 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 266/809 (32%), Positives = 419/809 (51%), Gaps = 38/809 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ + GL + + V +Y G++ +L+ Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ K ++ L+ + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF + Y G + L Y L +NG E PQ M Sbjct: 113 APMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 173 RVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA +LE WH D+ +F+D+RK G + R D+ A WIPDLFMKRV ++ WT Sbjct: 290 GNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP L D++G EFE Y YER+ + I A LW +L ETG P+ Sbjct: 350 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI L A Sbjct: 404 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++++L + L+ VID N + + +A+ SN HR I LG+ G +L +P+ Sbjct: 464 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S A + + E I + AS ELAQ+ G YS+F+GS +G+ D Sbjct: 524 ESEVAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 579 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 W+ L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 580 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN +L+ +L +WD++M L +GSI + +P +LK+++ T +EI Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 693 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT YYLR+++A++ + Sbjct: 694 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 753 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 T+ A + + + +P Sbjct: 754 FTIDQEVADQAATHIASVSELDRPVYVPK 782 >gi|323098671|gb|ADX22908.1| large subunit of ribonucleotide reductase protein [Monkeypox virus] Length = 771 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 273/814 (33%), Positives = 438/814 (53%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAISNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTTRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 GKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G + G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GXXRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ SPEA Sbjct: 465 LKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFXLLNYPFDSPEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I + A+ AS +LA++ G Y ++ GS G+ D ++ Sbjct: 525 DLNKKIFETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A PTA+ A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR+ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 P C C Sbjct: 754 KX------------------XPQVVCDSEICTSC 769 >gi|213409966|ref|XP_002175753.1| ribonucleoside-diphosphate reductase large chain [Schizosaccharomyces japonicus yFS275] gi|212003800|gb|EEB09460.1| ribonucleoside-diphosphate reductase large chain [Schizosaccharomyces japonicus yFS275] Length = 824 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 282/848 (33%), Positives = 438/848 (51%), Gaps = 65/848 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + V +Y G++ +L+ Sbjct: 1 MFVYKRDGRKEKVQFDKITARVSRLCYGLDPEHVDAAAVTQRVISGVYPGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L ++ KA +Q L+ + + Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQT--------DKAFSSVVQKLHDWVNPKTGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + Y G + L Y L I+G E PQ M Sbjct: 113 APMISDEVYEIVMKHKDELDSAIIYDRDFTYNYFGFKTLERSYLLRIDGKVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + E A+E YN +S +F ++PTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVAVGIHHDDIE---AAIETYNYMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYETLKTCAMISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA AYLE WH DV +F++LRK G + R ++ A WIPDLFM+RV +N W+ Sbjct: 290 GNKRPGAFAAYLEPWHPDVLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P+E L D++G+EF + E + R + A +W +++ ETG+P+ Sbjct: 350 FFCPNEAPGLADVWGEEF-----EELYERYEREGRARRVLPAQKVWYEIIRAQSETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S Q+++G + SNLCTEI SS +E AVCNL SI L + ++D+ + Sbjct: 405 MLYKDSCNRKSNQKNLGTIRCSNLCTEIVEYSSPDEVAVCNLASIALPMFIHDGKYDFQQ 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + + R L+ VID+N + + +A++SN HR +GLG+ G A L PY SPEA Sbjct: 465 LHNVAKVVTRNLNRVIDVNYYPVPEARRSNLRHRPVGLGVQGLADAFFKLRYPYESPEAR 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ E I A+ AS ELA E G Y +++GS QG+ D + Sbjct: 525 KLNLLIFETIYHAALEASCELAAEEGPYETYEGSPASQGILQYDMWNVTP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W LK ++ G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 575 TDLWDWASLKAKIAKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +L+ +L LWDE M + L +DGSI I IP DLK ++ T +EI +I+ A Sbjct: 635 IVNPWLLRDLVDLGLWDEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWEISQRTVIDYA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG- 918 + R +IDQ+QSLN+++ +PS K+ ++ W GLKT YYLR+ +A++ K T+ Sbjct: 695 ADRGAFIDQSQSLNIHIKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPL 754 Query: 919 ---------------------------------VDGKLNAVPVTDPNSSTHSLGIPSSCT 945 + + N+ + +S I S Sbjct: 755 SVKQTNSASAPSPAPASIRPKSSASVSAVNKNEKENEQNSSDNQEKVDIYNSKVIACSIK 814 Query: 946 SDTECEVC 953 + CE+C Sbjct: 815 NPEACEMC 822 >gi|50290817|ref|XP_447841.1| hypothetical protein [Candida glabrata CBS 138] gi|49527152|emb|CAG60790.1| unnamed protein product [Candida glabrata] Length = 894 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 282/804 (35%), Positives = 423/804 (52%), Gaps = 37/804 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + + G ++ + C GL + + V +Y+G++ +L+ Sbjct: 1 MYVYKRSGRKEPVKFDKITARISRLCYGLDPRIDAVKVTQRIISGVYEGVTTVELDNLAA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + P+YA + AR + L ++ + LY + Sbjct: 61 ETCAYMTTIHPDYATLAARVAISNLHKQTTKQFSQVVS--------NLYHYINPATGKHA 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + Y+RDF F Y G + L Y L ING E PQ MR Sbjct: 113 PMISDEVYQIVMDNKDELDSAIVYDRDFQFNYFGFKTLERSYLLRINGEVAERPQHLIMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYG 382 VA+G+ ++ + A+E YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + G Sbjct: 173 VALGIHGRD---LEAALETYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLVAMKDDSIEG 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L+E A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 IYDTLKECALISKTAGGIGLHIHNIRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGG 289 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH D+ +F+D+RKN G + R D+ A W+PDLFMKRV QN WTL Sbjct: 290 NKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWVPDLFMKRVEQNGNWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FSP L D YGKEFE YE YER+ + I A LW +L ETG P++ Sbjct: 350 FSPSSAPGLSDCYGKEFEELYERYEREGRG------KTIKAQKLWYSILEAQTETGTPFM 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQ 615 +KD CN +S Q+++GV+ SSNLC EI SS +ETAVCNL SI L A + Sbjct: 404 IYKDACNEKSNQRNLGVIKSSNLCCEIVEYSSPDETAVCNLASIALPAFIETSEDGKTST 463 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +++ KL + R L+ VID N + + +AK SN HR I LG+ G LL +P+ Sbjct: 464 YNFQKLHDIAKVITRNLNKVIDRNYYPVPEAKNSNMRHRPIALGVQGLADTFMLLRLPFD 523 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S A ++ + E I ++ AS ELAQ+ G Y S++GS +GVF D Sbjct: 524 SEGAAKLNIQIFETIYHASLEASCELAQKDGPYQSYQGSPISKGVFQFDMWNAKP----- 578 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WD L+K + G+RNS MA PTA+ + I G ++ +P N+Y + + Sbjct: 579 -----FGMWDWDALRKDILKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVL 633 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +L+ +L +WDE M + +GSI N+ IP +LK ++ T +EI Sbjct: 634 SGEFQVVNPYLLRDLVDLGIWDEGMKQHIITQNGSIQNLPNIPQELKDLYKTVWEISQKT 693 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I A+ R +IDQ+ SLNL+L P+ K+ ++ W GLKT YYLR+++A++ + Sbjct: 694 IINMAADRSVYIDQSHSLNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQF 753 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSL 938 T+ + A + D ++ Sbjct: 754 TIDQSVAQQAANNIADLSNLKRPS 777 >gi|297268640|ref|XP_002799729.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Macaca mulatta] Length = 762 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 285/786 (36%), Positives = 443/786 (56%), Gaps = 31/786 (3%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 + V + + + +Y G++ +L+T ++ TL K P+YA + AR + L +E Sbjct: 1 MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 +K M+ LY + ++ + L + + Y+RDF+ Sbjct: 61 --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + Y G + L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 ++I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ-- 347 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404 Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A S Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++GS +G+ D + T W+ LK+ + G+RNS +A PT Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPT 574 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +G Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947 W GLKT YYLR+R A + + TL + + ++ + S + Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENR 754 Query: 948 TECEVC 953 EC +C Sbjct: 755 DECLMC 760 >gi|255566650|ref|XP_002524309.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] gi|223536400|gb|EEF38049.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] Length = 810 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 289/834 (34%), Positives = 446/834 (53%), Gaps = 51/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + Y G++ + L+ Sbjct: 1 MYVIKRDGHQETVHFDKITARLKKLSYGLNSEYCDPVLVAQKVCSGFYKGVTTTQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + +K+ ++ +Y R ++ Sbjct: 61 AETAAAMTTNHPDYAILAARVAVSNLHKNT--------KKSFSETIKLMYSHINKRSGQK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L I+G +E PQ M Sbjct: 113 ASLIADDVYEIIMKNATRLDSEIIYDRDFDYDYFGFKTLERSYLLKIDGKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + + AV+ Y+L++ F +TPTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAIGIH---KDDVESAVKTYHLMAQRWFTHATPTLFNAGTPQPQLSSCFLGCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L+E A+++K +GG+G VR G+ I GTNG+S G++P L+V NDTA V+QG Sbjct: 230 GIFDTLKECAVISKVAGGIGLSVHNVRATGSFICGTNGESNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + RR D+ A WIPDLFM+RV + W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEERRARDLFYALWIPDLFMERVRGDGSWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G+EFE Y YE + + I A LW ++L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGEEFEKLYTFYEDGD-----RAKKVIPARKLWFEILNSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTE+ +S ETAVCNL SI L Sbjct: 405 MLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASIALPRFVRERGVPIGS 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 FD+ KLA T L+ +IDIN + ++ A++SN HR +G+G+ Sbjct: 465 HSSKLVGSRDSKTRYFDFAKLAEITVTITANLNKIIDINYYPVDTARRSNLRHRPMGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ S EA ++ + E I +HA+ +S ELA G Y ++KGS +G+ Sbjct: 525 QGLADTFILLGMPFDSLEAQQLNKDIFETIYYHALKSSSELAAIDGPYETYKGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 +D G++ R W+ L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQMDMWGVIPSDR----------WDWNVLREMISKNGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW A+ + + Y +GS+ + IP+ Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEIGLWSHALKNKIIYENGSVAKVPEIPEQ 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P KL ++ AW GLKT Sbjct: 695 LKAIYKTVWEIKQKTLVDMAVARGCYIDQSQSLNIHMDQPDLGKLTSLHFYAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K V T+ T + S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTSVLKHENVNSTNDYVDTDMAQMVCSLRNREECMAC 808 >gi|242063422|ref|XP_002453000.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor] gi|241932831|gb|EES05976.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor] Length = 810 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 283/834 (33%), Positives = 442/834 (52%), Gaps = 51/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S + ++ + GL + +V + +Y G++ ++ Sbjct: 1 MYVVKRDGRQESVHFDKITARLTRLSYGLSAEHCDPVLVAQKVCAGVYKGITTGEIGELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + +T+ ++ LY Y R Sbjct: 61 AETAAAMTTSHPDYASLAARIAVSNLHKNTMTSF--------SATVKALYTHYDERSGLM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L ++ Y+RDF ++Y G + L Y L I G E PQ M Sbjct: 113 APLIADDVFTIIMKNTARLECEINYDRDFDYDYFGFKTLQRSYLLKIGGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + A++ Y+++S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KDDIESAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L E A ++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLSECAAISKSAGGIGVSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDL+KN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHPDIFEFLDLKKNHGKEENRARDLFYALWVPDLFMERVQHNEQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G EF+ Y+ YER E K + ++A ALW +L ETG P+ Sbjct: 350 LFCPSEAPGLADCWGDEFQNLYQKYER-----EGKAKKVVAAQALWFDILKAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPSETAVCNLASIALPRFVREKGVPIES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA L+ +IDI+ + IE A++SN HR IG+G+ Sbjct: 465 HPAKLVGSSGSKNRYFDFDKLAEITSIVTCNLNKIIDISYYPIENARRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ SPEA ++ + E I +H++ AS ELA + G Y ++ GS +G+ Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYAGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ +SR W +++ + +G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVVP----------SSRWNWSAIREMISQVGLRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + +W + + + Y DGS+ I +PDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLSEMGVWSPVLKNKIIYEDGSVQKITEVPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI +++ A R +IDQ+QSLN+++++P+ KL ++ W GLKT Sbjct: 695 LKAIYKTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMEQPNSGKLTSLHFHGWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K + ++ + S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTTLLKDKQPTSEEEDAQVKMAQVACSLNNREECLAC 808 >gi|68070011|ref|XP_676917.1| ribonucleoside-diphosphate reductase, large subunit, [Plasmodium berghei strain ANKA] gi|56496825|emb|CAH95342.1| ribonucleoside-diphosphate reductase, large subunit, putative [Plasmodium berghei] Length = 847 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 289/841 (34%), Positives = 437/841 (51%), Gaps = 47/841 (5%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDG 192 + ++ G + ++ ++ GL + V V MY G Sbjct: 31 KRTPSGKPIQTMYVLNRKGEEEDVSFDQILKRIQRLSYGLHELVDPARVTQGVINGMYSG 90 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + +L+ + + P+++ + AR + L + + K + ++ Sbjct: 91 IKTCELDELAAQTCAYMATTHPDFSILAARITTDNLHKSTNDDIGKVAEALYTYKDIRGR 150 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 I + V ++ L ++ Y RDF ++Y G + L Y L IN Sbjct: 151 S---ASLISKEVYDFIM------EHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNK 201 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE PQ MRV++G+ + + ++A+E Y+L+S +F +TPTLFNSGT PQ+SSCF Sbjct: 202 IIERPQHLLMRVSIGIHIDD---LEKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCF 258 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L ++ D + GIF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V Sbjct: 259 LLSMKSDSIEGIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVF 318 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFM Sbjct: 319 NDTARYVDQGGGKRKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFM 378 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 KRV +N WTL P+E L + +G EFE Y YE + + + A LW +L Sbjct: 379 KRVKENKNWTLMCPNECPGLSESWGDEFEKLYTKYEEENL-----GKKTVLAQDLWFAIL 433 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ +KD CN +S Q+++G + SNLC EI +S +E AVCNL SI L Sbjct: 434 QSQIETGVPYMLYKDACNSKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKF 493 Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +F++ KL + R LD +I+ N + I++A+KSN HR IG+G+ G Sbjct: 494 VDREKKEFNFKKLYDITKIITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQGLADTFM 553 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 LL PY S EA E+ E + + A+ SVELAQ G Y S+KGS QG+ D Sbjct: 554 LLRYPYESDEAKELNKRIFETMYYAALEMSVELAQVHGPYESYKGSPASQGILQFDMWNA 613 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + WD LKK++ G+RNS +A PTA+ + I G ++S +P N Sbjct: 614 KVDNK---------YWDWDLLKKKISIHGLRNSLLLAPMPTASTSQILGNNESFEPYTSN 664 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F VVN L+ +L R LWDE M L H+GS+ I IP+DLK+++ T Sbjct: 665 IYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDLKELYKTV 724 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +I+ A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++ Sbjct: 725 WEIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQA 784 Query: 908 ATSVEKSTLKGVDGKLNAV-----------PVTDPNSSTHSLGIPSSC----TSDTECEV 952 AT K T+ K V+ ST S ++C +D C + Sbjct: 785 ATDAIKFTVDTQVAKNAEKLKNAEGATITREVSRETISTESTVTQNACPLRRNNDEPCLM 844 Query: 953 C 953 C Sbjct: 845 C 845 >gi|332211479|ref|XP_003254846.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 2 [Nomascus leucogenys] Length = 762 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 285/786 (36%), Positives = 441/786 (56%), Gaps = 31/786 (3%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 + V + + + +Y G++ +L+T ++ TL K P+YA + AR + L +E Sbjct: 1 MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 +K M+ LY + ++ + L + + Y+RDF+ Sbjct: 61 --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + Y G + L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 ++I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-- 347 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404 Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A S Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++GS +G+ D + T W LK+++ G+RNS +A PT Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPT 574 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +G Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IPDDLK+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947 W GLKT YYLR+R A + + TL V + ++ + S + Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENR 754 Query: 948 TECEVC 953 EC +C Sbjct: 755 DECLMC 760 >gi|332835621|ref|XP_003312921.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Pan troglodytes] Length = 762 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 285/786 (36%), Positives = 442/786 (56%), Gaps = 31/786 (3%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 + V + + + +Y G++ +L+T ++ TL K P+YA + AR + L +E Sbjct: 1 MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 +K M+ LY + ++ + L + + Y+RDF+ Sbjct: 61 --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + Y G + L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 ++I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-- 347 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404 Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A S Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++GS +G+ D + T W LK+++ G+RNS +A PT Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPT 574 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +G Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947 W GLKT YYLR+R A + + TL V + ++ + S + Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENR 754 Query: 948 TECEVC 953 EC +C Sbjct: 755 DECLMC 760 >gi|194388656|dbj|BAG60296.1| unnamed protein product [Homo sapiens] Length = 762 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 285/786 (36%), Positives = 442/786 (56%), Gaps = 31/786 (3%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 + V + + + +Y G++ +L+T ++ TL K P+YA + AR + L +E Sbjct: 1 MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 +K M+ LY + ++ + L + + Y+RDF+ Sbjct: 61 --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + Y G + L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 ++I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-- 347 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 348 ---GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404 Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A S Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLS 464 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYE 524 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++GS +G+ D + T W LK+++ G+RNS +A PT Sbjct: 525 TYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPT 574 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +G Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947 W GLKT YYLR+R A + + TL V + ++ + S + Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENR 754 Query: 948 TECEVC 953 EC +C Sbjct: 755 DECLMC 760 >gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex quinquefasciatus] gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex quinquefasciatus] Length = 838 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 276/799 (34%), Positives = 426/799 (53%), Gaps = 32/799 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG + ++ +++ C GL V + + +Y G++ +L+ Sbjct: 1 MYVFKRDGRKEEVHLDKITSRIQKLCYGLNMDFVDPVAITLKVINGLYTGVTTQELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL + +YA + AR + L +E M LY + Sbjct: 61 AETAATLTTEHADYAILAARLAVSNLHKETKKHFSDV--------MADLYNMENEFLKTK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 H ++ + L + + Y+RDF + Y G + L Y L I G +E PQ M Sbjct: 113 SPMISDEHYKIIMDNADRLNSAIIYDRDFGYNYFGFKTLERSYLLKIKGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ A+E YNLLS +F ++PT+F + TR PQLSSCFL T+ DD + Sbjct: 173 RVAVGIHG---LDIDAAIETYNLLSERYFTHASPTMFAAATRRPQLSSCFLLTMSDDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G +I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVNVHCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDL+KNTG + R DM A WIPDLFMKRV N W Sbjct: 290 GNKRPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWC 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P + L + +G+EFE Y YE E + RK+ A LW ++ ETG P+ Sbjct: 350 LMCPHDCPGLPETWGEEFEKLYTTYEN-----EGRYIRKVKAQDLWFAIIESQVETGVPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYD 619 + +KD CN +S QQ++G + SNLCTEI SS +E AVCNL SI + ++ +D+ Sbjct: 405 MLYKDACNRKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVKPDKSYDFQ 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + + L+ +IDIN + + +AK+SN HR IG+G+ G A L+ PY S EA Sbjct: 465 KLKEVSKIVTKNLNKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ + E I + A+ AS E+A++ G Y ++ G +G+ D Sbjct: 525 QKLNQQIFETIYYGALEASCEIAEKDGTYETYDGCPVSKGILQYDMWNKAP--------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W LK+++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F Sbjct: 576 -SDLWDWAPLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L + +LWD+ M + + +GSI +I+ IP +++++ T +EI I+ Sbjct: 635 QVVNHHLLKDLTELELWDDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QS N+++ EP+ KL I+ W MGLKT YYLR++ A + + T+ Sbjct: 695 AADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDK 754 Query: 919 VDGKLNAVPVTDPNSSTHS 937 V S + S Sbjct: 755 VKLGQTQSAQNGTTSPSKS 773 >gi|332023837|gb|EGI64061.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex echinatior] Length = 854 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 278/827 (33%), Positives = 442/827 (53%), Gaps = 39/827 (4%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYD 191 K+ ++ +G + ++ + + C L V V + + +Y Sbjct: 21 KMPIKESPRGKMHVIKRNGRKEDVHFDKITSRIVKQCYNLDMNYVDPSAVAIQVIRGLYS 80 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 G++ L+ ++ T+ K P+YA + AR + L +E + + M L Sbjct: 81 GVTTVVLDNLAAETAATMATKHPDYAILAARIDVSNLHKETKKSFSEV--------MHDL 132 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 + + +++ + L + + Y+RDF + Y+G + L Y L ING Sbjct: 133 HYAKNPVTNHYNPIISKHYYNIIKNNAEKLDSAIIYDRDFNYNYIGFKTLERSYLLKING 192 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 +E PQ MRVA+G+ + +E YN LS +F ++PTLFN+ T + Q+SSC Sbjct: 193 KIVERPQHMLMRVAVGIHEN---NIDKVIETYNYLSERYFTHASPTLFNACTNNQQMSSC 249 Query: 372 FLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 FL T+ DD + IFG L+ A+++KY+GG+G + +R T ++ G+I LK+ Sbjct: 250 FLLTLEDDSIKSIFGTLKNCALISKYAGGIGLNVHCIRAKNVEDTSTK-RTNGLISILKL 308 Query: 431 ANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 ND A+ V+QG KR GA YLE WH D+ +FL+L++N GD R D+ WIPDLF Sbjct: 309 YNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELKRNIGDGNMRARDLFYGLWIPDLF 368 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+RV + W+L P E L D++G EF+ Y YE+ E + +++ A ++W + Sbjct: 369 MERVYNDEMWSLMCPHESPGLSDVWGDEFKELYTRYEK-----EGRYKKQVEARSVWLAI 423 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NL 607 L ETG P++ +KD CN +S QH+G V SNLCTEI S E AVCNL SI N+ Sbjct: 424 LRSQVETGTPYMLYKDHCNRKSNHQHIGTVKCSNLCTEIIEYSGPGEVAVCNLASIAVNM 483 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + FD+DKL + + R LD VID+N + IE+ + SNH HR IG+G+ G A Sbjct: 484 FVNIDTKIFDFDKLKTVAKIVTRNLDKVIDVNFYPIEETRTSNHRHRPIGIGIQGLADAF 543 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L+ P+ S EA E+ + E + + A+ AS ELA E+G Y +++GS +G+ D Sbjct: 544 LLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYETYQGSPVSKGILQYDMWN 603 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + T+ WDELK ++ G+RNS +A PTA+ A I G ++SI+P Sbjct: 604 ----------VKPTNLWDWDELKAKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTS 653 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 N+YV+ +SG+F +VN L+ +L R LWDE M +++ + GS+ NIERIPDDLK+++ T Sbjct: 654 NIYVRRVLSGEFIIVNPHLLRDLTSRGLWDEDMKNEILANFGSVQNIERIPDDLKELYKT 713 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 +EI ++E A+ R ++DQ+QSLN+++ +P+ +KL ++ W GLKT YYLR++ Sbjct: 714 VWEIPQKVILEMAADRGAFVDQSQSLNVHIGDPTTEKLTSMHFFGWKSGLKTGMYYLRTK 773 Query: 907 SATSVEKSTLKGVDGK-----LNAVPVTDPNSSTHSLGIPSSCTSDT 948 A + + T+ + N + ++ + P+ + D Sbjct: 774 PAANPIQFTVDKSKLQNRDSVSNVSDASTSVVNSTPIQSPNQDSDDD 820 >gi|209878422|ref|XP_002140652.1| ribonucleoside-diphosphate reductase, large subunit [Cryptosporidium muris RN66] gi|209556258|gb|EEA06303.1| ribonucleoside-diphosphate reductase, large subunit, putative [Cryptosporidium muris RN66] Length = 809 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 284/835 (34%), Positives = 453/835 (54%), Gaps = 52/835 (6%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLET 200 A ++ ++ G + ++ + + GL V V MY G+ S+L+ Sbjct: 2 AERMYVINRRGKEEPVSFDQILSRISKLSYGLHPLVDPARVAQAVINGMYSGIKTSELDE 61 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + + P+++K+ AR + L + + +++ + + P Sbjct: 62 LASQTCAYMAASHPDFSKLAARISISNLHKNTHSDIFEVANQLISFKDVHGNP------- 114 Query: 261 EEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 A LL +++ +F + L + + + RDF ++Y + L Y L ++ +E P Sbjct: 115 -----APLLSQTVYEFIIENKDRLNSVIDFSRDFEYDYFAFKTLERSYLLRVDDKIVERP 169 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q MRV+ G+ A+E Y LLS +F +TPTLFN+GT PQ+SSCF+ + Sbjct: 170 QHLLMRVSCGIHYG---NIDAAIETYELLSQKYFTHATPTLFNAGTLRPQMSSCFILKMS 226 Query: 378 DD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DD + GIF L++ A ++K +GGLG + +R G++I GTNG+S G+IP L+V NDTA Sbjct: 227 DDSIDGIFDTLKKCANISKTAGGLGVAISNIRAAGSYIRGTNGRSNGLIPMLRVYNDTAR 286 Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGG KRKGA+ YLE WH D+ EF+++RKN G + R D+ A WIPDLFM+RV + Sbjct: 287 YVDQGGGKRKGALAVYLEPWHADILEFIEIRKNHGKEEMRCRDIFPALWIPDLFMERVEK 346 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +A WTL PDE + D++G +F+ YE+YE+ E + + I A +LW +L E Sbjct: 347 DANWTLMCPDECPGMQDVWGDQFKELYEHYEK-----EGRGRKTIKAQSLWFALLQSQIE 401 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FAN 613 TG P+I +KD N +S QQ++G + SSNLCTEI +SS+E AVCNL SI L N Sbjct: 402 TGTPFICYKDAANRKSNQQNLGTIKSSNLCTEIMEYTSSDEVAVCNLASIGLPRFVDREN 461 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 +FD+ KL ++ A+R L+ VID + I + ++SN HR +GLG+ G +L P Sbjct: 462 KKFDFKKLYEVVKVAIRNLNKVIDRGYYPIPECRRSNLRHRPLGLGVQGLADCFMILRYP 521 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S +A ++ E E I + A+ AS ELA++ G Y +F+GS +G+ D + Sbjct: 522 YESKDARKLNIEIFETIYYAALDASCELAEKYGPYETFQGSPASRGLLQFDLWNV----- 576 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + WD LK+++ G+RNS +A PTA+ + + G ++S +P N+Y + Sbjct: 577 ----QPSSGLWNWDLLKEKIAKYGLRNSLLVAPMPTASTSQLLGNNESFEPFTSNIYHRR 632 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F VVN L+N+L + LWDE + ++ ++GS+ NIE IP D++ ++ T +EI Sbjct: 633 VLSGEFFVVNPHLLNDLLELGLWDERLKQNIIANNGSVQNIESIPRDIRDLYKTVWEIRQ 692 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +I+ A+ R +I Q+QSLN+Y+ + KL ++ W GLKT +YYLR++SA + Sbjct: 693 KAVIDMAADRGPYICQSQSLNIYIANANYAKLSSMHFYGWKKGLKTGSYYLRTQSAANPI 752 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS--------SCTSDT------ECEVC 953 + T+ K A + ++ +L S +C EC +C Sbjct: 753 QFTIDQQLLKSTADKNKEQDAKRPALQNSSQGDGRSVMACPLRPANLQGEECLMC 807 >gi|47497381|dbj|BAD19419.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|125584063|gb|EAZ24994.1| hypothetical protein OsJ_08774 [Oryza sativa Japonica Group] gi|186920366|gb|ACC95436.1| ribonucleotide diphosphate reductase large subunit 2 [Oryza sativa Japonica Group] Length = 810 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 287/834 (34%), Positives = 443/834 (53%), Gaps = 51/834 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ ++ GL + +V + +Y G++ S L Sbjct: 1 MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + + H I + Sbjct: 61 AETAAAMTASHPDYASLAARIAISNLHKTTMKSFSETIKVMYMH--YDERSGLLAPLIAD 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 V ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 119 DVYEIIM------KNTTRLDSEIIYDRDFDYDYFGFKTLERSYLLKVVGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + A++ Y+++S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSIGIH---KDDIESAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMNDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L E A ++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLSECATISKCAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A WIPDLFM+RV N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNENWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EF+ Y+ YER E K + +SA ALW +L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGDEFQNLYKKYER-----EGKAKKVVSAQALWFDILKAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLYKDSCNRKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIGLPRFVREKGVPMES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA R L+ +ID N + +E AK+SN HR IG+G+ Sbjct: 465 HPAKLVGSNGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ S EA ++ + E I +HA+ AS E+A + G Y ++ GS +G+ Sbjct: 525 QGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W +L++ + +G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVVPSDR----------WNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + +W + + + Y DGS+ I IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI +++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 695 LKAIYRTVWEIKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K + + + + S + EC C Sbjct: 755 MYYLRTRAAADAIKFTVDTTLLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 808 >gi|297447|emb|CAA46232.1| ribonucleotide reductase, large subunit [Schizosaccharomyces pombe] Length = 811 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 287/835 (34%), Positives = 446/835 (53%), Gaps = 52/835 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L ++ +K +Q L+ + + Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPKTDKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L I+G E PQ M Sbjct: 113 APMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E + A+E YNL+S +F ++PTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVAVGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +GG+G +R G++I GTNG S G++P ++V N+TA V+QG Sbjct: 230 GIYDTLKMCAMISKTAGGIGIYIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA AYLE WH DV +FL+LRK G++ R M A WIPDLFM+RV +N WT Sbjct: 290 GNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P+E L D++G EF YE YE+ E + R + A +W +L ETG+P+ Sbjct: 350 FFCPNEAPGLADVWGDEFVALYEKYEK-----ENRGRRSLPAQKVWYAILQSQVETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S Q++VG + SSNLCTEI SS +E AVCNL S+ L + ++++ K Sbjct: 405 MLYKDSCNRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ R L+ +ID+N + + +A++SN HR +GLG+ G A L +P+ S A Sbjct: 465 LHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I A+ AS E+AQ G Y S++GS QG+ D +N Sbjct: 525 KLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWN----------VNP 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W E K+++ G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 575 TDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +L+ +L +RDLW+E M + L DGSI I IP DLK ++ T +EI +I+ A Sbjct: 635 IVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QSLN++L +PS K+ ++ W GLKT YYLR+ +A++ K T+ V Sbjct: 695 ADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754 Query: 920 ---------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +++A P + + + S + CE+C Sbjct: 755 ALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809 >gi|194363984|ref|YP_002026594.1| ribonucleoside-diphosphate reductase subunit alpha [Stenotrophomonas maltophilia R551-3] gi|194346788|gb|ACF49911.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas maltophilia R551-3] Length = 803 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 332/841 (39%), Positives = 469/841 (55%), Gaps = 50/841 (5%) Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 E + + + P A + + +GT + ++ V+ + GL V V Sbjct: 4 ESSATIEKESEFLLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVA 63 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 + T +Y+G + +L+ I ++ LI +EP Y ++ AR L + +EV Sbjct: 64 TRTISGLYNGATTRELDELSIRTAALLIGEEPEYGRLAARLLANYIAKEVSGQEI----- 118 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQ 299 F + + G + L+++ +++F + L + + D F+Y GL+ Sbjct: 119 -----------YAFSQSVGRGHEVGLINDRLLNFVQTNARKLNDAIDMSLDLNFDYFGLR 167 Query: 300 ILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 LYDRY L IE PQ FF+R+A L+ E A+ Y + + ++ S+PT Sbjct: 168 TLYDRYLLRHPHTRKVIETPQQFFLRIASALS----EDVPEALALYKRMGNLDYLPSSPT 223 Query: 358 LFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 LFNSGT H QLSSCFL D L I+ + A L+K+SGG+G +T VR G+ I Sbjct: 224 LFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKS 283 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG S G++P+LK + + AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR Sbjct: 284 TNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDESRRA 343 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 H++N ANWIPDLFMKRV + W+LF P V + DL+G+ FE AY E Q K Sbjct: 344 HNLNLANWIPDLFMKRVEADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQ-----GKA 398 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSS 594 R ISA L+ +M+ L ETG+ W+TFKD CN S Q + V+H SNLCTEI +S+ Sbjct: 399 NRTISARKLYSRMMRTLAETGNGWMTFKDKCNRASNQTLRAGNVIHLSNLCTEILEVTSA 458 Query: 595 EETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 EETAVCNLGSINL HF N +FD+DKLA T+R AVR LD VID+N + IE A++ N Sbjct: 459 EETAVCNLGSINLGNHFDGNGEFDFDKLADTVRLAVRQLDRVIDLNFYPIESARRGNLRW 518 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +GLG MG Q +P+ EA ++ + E I FHA+ SVELAQERG + SF Sbjct: 519 RPVGLGCMGLQDVFFRKRLPFDGAEARALSKKIAETIYFHALETSVELAQERGKHPSFAD 578 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + G D+ ++ E WD L++R+K G+RNS +AIAPTATIA Sbjct: 579 TRAASGELQFDAWNVVPED----------AERWDSLRERIKEHGLRNSLMIAIAPTATIA 628 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 +I G + ++P NL+ + +SGDF VN +LVNELK+ W M +K +GSI Sbjct: 629 SIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLGHWTPEMRDAIKLAEGSIQG 688 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 I +IP+ L+ ++ TA+E+ LI+ A+ R +IDQ+ SLNL+++ P+ + +Y AW Sbjct: 689 ITQIPETLRHVYRTAWELPMRSLIDMAADRGAFIDQSASLNLFMESPNIGAMSSMYMYAW 748 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 G+KTTYYLRSR AT + K+T+ +A + I S + CE C Sbjct: 749 KQGIKTTYYLRSRPATKIAKTTVS------HAAGAAPEKVFSPEEAIACSLENPEACEAC 802 Query: 954 Q 954 Q Sbjct: 803 Q 803 Score = 39.4 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 M E F P + V KRNG D +KI RA+ + + EG Sbjct: 1 MTTESSATIEKESEF---LLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQR---SSEGL 54 Query: 61 GASRSIRV 68 A +RV Sbjct: 55 HAVDPMRV 62 >gi|52000447|dbj|BAD44751.1| NSG5 protein [Chlamydomonas reinhardtii] Length = 878 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 284/823 (34%), Positives = 438/823 (53%), Gaps = 49/823 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 + ++ DG ++ + + GL + +V + +Y G++ S+L+ Sbjct: 3 SMYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDEL 62 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ L P+YA + AR + L + +K+ M LY R E Sbjct: 63 AAETAAALTSTHPDYAILAARIAVSNLHKNT--------EKSFSKTMDKLYTYRNPRNGE 114 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 E ++ + L ++++Y+RDF ++Y G + L Y L I+G +E PQ Sbjct: 115 EAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHML 174 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ E + A+ Y+ +S F ++PTLFN GT PQLSSCFL + DD + Sbjct: 175 MRVAVGIH---KEDIEAAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSI 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E A+++K +GG+G +RG G++I GTNG S G++P L+V NDTA V+Q Sbjct: 232 DGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 291 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KRKGA Y+E WH DV +FLDLRKN G + R D+ WIPDLFM+RV + W Sbjct: 292 GGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEW 351 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +LF P+E L D +G+EFE Y YE+ E + R + A LW +L ETG+P Sbjct: 352 SLFCPNEAPGLADCWGEEFERLYLKYEQ-----EGRSRRVVRAQQLWFAILEAQVETGNP 406 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------- 612 ++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL SI L Sbjct: 407 YMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPG 466 Query: 613 -------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 N FD++KLA + R L+ +ID+N + KA++SN HR IGLG Sbjct: 467 WESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHRPIGLG 526 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G LL + + SPEA E+ + E + A+S S ELA+ G Y ++ GS QG Sbjct: 527 VQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVSQG 586 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 V D G+ D R W+EL+ R+ G+RNS +A PTA+ + I G + Sbjct: 587 VLQPDMWGVKPTGVDG-------RCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNN 639 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + +P N+YV+ +SG+FTVVN L+++L + +W + ++L +GS+ + IP+ Sbjct: 640 ECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLEL-EIPE 698 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +LK ++ T +EI L++ A+ R +IDQ+QS N+++ +P+ KL ++ AW GLKT Sbjct: 699 ELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKT 758 Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 YYLR+++A K T+ ++ + + Sbjct: 759 GMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAATAATPQMK 801 >gi|159485006|ref|XP_001700540.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas reinhardtii] gi|158272180|gb|EDO97984.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas reinhardtii] Length = 878 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 284/823 (34%), Positives = 438/823 (53%), Gaps = 49/823 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 + ++ DG ++ + + GL + +V + +Y G++ S+L+ Sbjct: 3 SMYVLKRDGRQEPVMFDKITARIVKLAYGLNPDFCDAVLVAQKVAGGVYKGVTTSELDEL 62 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ L P+YA + AR + L + +K+ M LY R E Sbjct: 63 AAETAAALTSTHPDYAILAARIAVSNLHKNT--------EKSFSKTMDKLYTYRNPRNGE 114 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 E ++ + L ++++Y+RDF ++Y G + L Y L I+G +E PQ Sbjct: 115 EAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFKTLERSYLLRIDGKVVERPQHML 174 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ E + A+ Y+ +S F ++PTLFN GT PQLSSCFL + DD + Sbjct: 175 MRVAVGIH---KEDIESAITTYHAMSERWFTHASPTLFNGGTPRPQLSSCFLLAMRDDSI 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E A+++K +GG+G +RG G++I GTNG S G++P L+V NDTA V+Q Sbjct: 232 DGIYDTLKECAVISKSAGGIGLSIHCIRGTGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 291 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KRKGA Y+E WH DV +FLDLRKN G + R D+ WIPDLFM+RV + W Sbjct: 292 GGGKRKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEW 351 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +LF P+E L D +G+EFE Y YE+ E + R + A LW +L ETG+P Sbjct: 352 SLFCPNEAPGLADCWGEEFERLYLKYEQ-----EGRSRRVVRAQQLWFAILEAQVETGNP 406 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA------- 612 ++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL SI L Sbjct: 407 YMLYKDHCNRKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPG 466 Query: 613 -------------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 N FD++KLA + R L+ +ID+N + KA++SN HR IGLG Sbjct: 467 WESKKLVGSLDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHRPIGLG 526 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G LL + + SPEA E+ + E + A+S S ELA+ G Y ++ GS QG Sbjct: 527 VQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVSQG 586 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 V D G+ D R W+EL+ R+ G+RNS +A PTA+ + I G + Sbjct: 587 VLQPDMWGVKPTGVDG-------RCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNN 639 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 + +P N+YV+ +SG+FTVVN L+++L + +W + ++L +GS+ + IP+ Sbjct: 640 ECFEPYTSNIYVRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLEL-EIPE 698 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 +LK ++ T +EI L++ A+ R +IDQ+QS N+++ +P+ KL ++ AW GLKT Sbjct: 699 ELKGLYKTVWEIKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKT 758 Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 YYLR+++A K T+ ++ + + Sbjct: 759 GMYYLRTKAAADAIKFTVDQQALSKKKTTQGTSAATAATPQMK 801 >gi|298711866|emb|CBJ32887.1| ribonucleotide reductase large chain subunit [Ectocarpus siliculosus] Length = 797 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 269/822 (32%), Positives = 432/822 (52%), Gaps = 40/822 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ + C GL V ++ + +Y G++ S+L+ Sbjct: 1 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+ + + AR + L + T K ++ L+ + E Sbjct: 61 AQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKT--------IEMLHTYVLPQTGER 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + ++ ERDF ++Y G + L Y L NG +E Q M Sbjct: 113 SSLISDEVFRIVMENKEVLDSAIQDERDFEYDYFGFKTLEKSYLLRANGFVVERIQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E Y+L+S F ++PTLFN+GT PQLSSCFL V D + Sbjct: 173 RVAIGIHQ---TDIDSAIESYDLMSQRLFTHASPTLFNAGTPRPQLSSCFLLNVKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A ++K++GG+G +R +++ G+NG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKQCACISKFAGGIGVSIHSIRATDSYVAGSNGSSNGLVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ Y E WH D+ FLDLRKN G++ R D+ A WIPDLFMKRV + W+ Sbjct: 290 GGKRKGSFAMYREPWHADIFAFLDLRKNHGNELERARDLFYALWIPDLFMKRVEADGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D++G EFE Y++YE + R I A LW ++ ETG P+ Sbjct: 350 LFCPNEAPGLPDVFGDEFEALYKSYEA-----KGLARRSIKARQLWVAIMDAQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 + FKD CN +S Q+++G + SSNLCTEI + +E AVCNL SI+L A + Sbjct: 405 MLFKDACNSKSNQKNLGTIKSSNLCTEIIEYTDPDEVAVCNLASISLPAFVSAGEDGQPA 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ +L + R L+ VID+N + +E+AK+SN HR +GLG+ G A ++ P+ Sbjct: 465 FDFHRLYEVTKVVTRNLNRVIDVNFYPVEEAKRSNFRHRPVGLGVQGLADAFIMMRFPFE 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S +A ++ + E I F A+ ASVELA+++G Y +++GS QG+ D G+ R Sbjct: 525 SEKAAKLNRDIFETIYFGAVEASVELAEKQGTYETYEGSPASQGLLQYDMWGVTPSDR-- 582 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W LK ++ G+RNS +A PTA+ A I G ++S++P N+Y + + Sbjct: 583 --------WDWAGLKAKMAQHGLRNSLLLAPMPTASTAQILGNNESVEPFTSNMYNRRVL 634 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +G+F VVN L+ +L R LW ++ + + GS+ ++ IP DLK ++ T +EI Sbjct: 635 AGEFAVVNKHLLRDLTTRGLWTPSVRNQIIADQGSVQRVD-IPQDLKDLYKTVWEIKQKV 693 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ ++ R +I Q+QS+N+++ +P+ KL ++ +W GLKT YYLR++ + Sbjct: 694 VIDMSADRGAFICQSQSMNVHMADPTQGKLTSMHFYSWKKGLKTGMYYLRTKPKAHAIQF 753 Query: 915 TLKGVDGKLNAVPVT---DPNSSTHSLGIPSSCTSDTECEVC 953 T+ + D EC C Sbjct: 754 TVDQESLAAAVREQALLRREGKGGDESAKANEEEDDGECLTC 795 >gi|296217188|ref|XP_002754896.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 2 [Callithrix jacchus] Length = 762 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 286/786 (36%), Positives = 441/786 (56%), Gaps = 31/786 (3%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 + V + + + +Y G++ +L+T ++ TL K P+YA + AR + L +E Sbjct: 1 MDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET 60 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 +K M+ LY + ++ + L + + Y+RDF+ Sbjct: 61 --------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFS 112 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + Y G + L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 113 YNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFT 169 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G Sbjct: 170 HASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATG 229 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 ++I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 230 SYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTG 289 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q Sbjct: 290 KEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR- 348 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 349 ----RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 404 Query: 591 NSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A S Sbjct: 405 YTSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLS 464 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E G Y Sbjct: 465 NKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYE 524 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++GS +G+ D + T W LK+++ G+RNS +A PT Sbjct: 525 TYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPT 574 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +G Sbjct: 575 ASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNG 634 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IPDDLK+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 635 SIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMH 694 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSD 947 W GLKT YYLR+R A + + TL V + ++ + S + Sbjct: 695 FYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMMCSLENR 754 Query: 948 TECEVC 953 EC +C Sbjct: 755 DECLMC 760 >gi|241854846|ref|XP_002415982.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] gi|215510196|gb|EEC19649.1| ribonucleotide reductase, alpha subunit, putative [Ixodes scapularis] Length = 766 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 271/784 (34%), Positives = 438/784 (55%), Gaps = 32/784 (4%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDL 198 + + ++ +G S + ++ + + C GL V ++ + +Y G++ +L Sbjct: 6 LRNSMFVVKRNGRHESIHFDKITSRISKLCYGLNTDFVDPCVITQKVIVGLYPGVTTVEL 65 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + ++ T+ K P+YA + AR + L +E +K M LY Sbjct: 66 DNLAAETAATMTTKHPDYAILAARLAISNLHKET--------KKVFSEVMTDLYHMVNET 117 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 + ++ + +L + + Y+RDF + Y G + L + L ING +E PQ Sbjct: 118 NGKSTPMISEETYKIVMNNADFLNSSIVYDRDFNYNYFGFKTLERAHLLKINGKVVERPQ 177 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 MRV++G+ + A+E YNL+S F ++PTLFN+GT PQLSSCFL + D Sbjct: 178 HMLMRVSIGIHGDD---LSSAIETYNLMSEKWFTQASPTLFNAGTPKPQLSSCFLLQMKD 234 Query: 379 D-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA Sbjct: 235 DSIEGIYDTLKQCALISKSAGGIGINIHNIRASGSYIAGTNGTSNGIVPMLRVYNNTARY 294 Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QG KR GA+ YLE WH DV +FLDL+KNTG + R D+ WIPDLFMKRV ++ Sbjct: 295 VDQGGNKRPGAIAIYLEPWHADVFDFLDLKKNTGKEESRARDLFYGLWIPDLFMKRVEED 354 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+L P E L D+YG++FE Y YE E + R++ A LW ++ ET Sbjct: 355 GIWSLMCPHESPHLQDVYGEDFEKLYVRYE-----TEKRYRRQVRAQQLWSAIIESQTET 409 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 G P++ +KD CN +S Q++VG + SNLCTEI +S +E AVCNL SI L + F Sbjct: 410 GTPYMLYKDACNRKSNQKNVGTIKCSNLCTEIVEYTSVDEVAVCNLASIALNRFVYHGHF 469 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D++KL R R L+ +ID+N + I +AK SN HR IG+G+ G A LL +P+ Sbjct: 470 DFEKLRQVTRVVTRNLNKIIDVNYYPIPEAKLSNMRHRPIGIGVQGLADAFILLRLPFDC 529 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA EI + E I + A+ S EL+++ G Y ++ GS QG+ D + Sbjct: 530 DEACEINKKIFETIYYGALEESCELSKKFGPYETYPGSPVSQGILQYDMWNVTP------ 583 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 ++ W LK+R+K+ G+RNS +A PTA+ A I G +++++P N+Y + +S Sbjct: 584 ----SNLWDWSALKERIKSFGIRNSLLVAPMPTASTAQILGNNEAMEPYTSNVYTRRVLS 639 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G+F +VN L+ +L + LW++ + ++L ++GS+ + IP +LK ++ T +EI + Sbjct: 640 GEFQIVNHHLLKDLTRLGLWNDNLKNELIANNGSVQKL-NIPKELKMLYRTVWEISQKNI 698 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 +E ++ R ++DQ+QSLN+++ +P+ KL ++ W +GLKT YYLR++ A + + T Sbjct: 699 LEMSADRGAFVDQSQSLNIHIAQPTYGKLTSMHFCGWKLGLKTGMYYLRTKPAVNAIQFT 758 Query: 916 LKGV 919 + Sbjct: 759 VDKS 762 >gi|294471317|gb|ADE80903.1| RR1 [Spodoptera litura NPV] Length = 772 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 261/783 (33%), Positives = 427/783 (54%), Gaps = 32/783 (4%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203 + DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + Sbjct: 6 YVTKRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIA 65 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ ++ +Y+ + AR + L +E + + + +Y + Sbjct: 66 ETAASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAAT 117 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ MR Sbjct: 118 PMISDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMR 177 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382 VA+G+ ++ A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + D + G Sbjct: 178 VAIGIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEG 234 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQG Sbjct: 235 IYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGG 294 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W+L Sbjct: 295 NKRPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSL 354 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + L D +G EFE YE YE+Q + +++SA LWR ++ ETG P++ Sbjct: 355 MCPMQSPGLADCHGVEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYM 409 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYD 619 +KD CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D++ Sbjct: 410 LYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFE 469 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +L + R L+ +ID N + +A++SN +R IG+G+ G A + +PY S A Sbjct: 470 RLKEITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAA 529 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 E+ + E I + A+ AS ELA + G Y ++KGS +G D Sbjct: 530 AELNKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------GAT 580 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 ++ W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F Sbjct: 581 PSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEF 640 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I Sbjct: 641 QVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRM 700 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 701 AADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDK 760 Query: 919 VDG 921 Sbjct: 761 TAA 763 >gi|307196361|gb|EFN77956.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos saltator] Length = 849 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 274/824 (33%), Positives = 445/824 (54%), Gaps = 33/824 (4%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMY 190 + + K+ ++ +G + ++ + + C L V V + + +Y Sbjct: 20 AKMPAKEVARGKMHVIKRNGRKEDVHFDKITSRIAKQCYSLNMNYVDPSAVAIQVIRGLY 79 Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 G++ +L+ ++ T+ + P+YA + AR + L +E + + M Sbjct: 80 SGVTTVELDNLAAETAATMATQHPDYAILAARIDVSNLHKETKKSFSEV--------MHD 131 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 L+ E + +++ + L + + Y+RDF + Y+G + L Y L IN Sbjct: 132 LHYARDPITNEPNPVISEHYYNIIKRNAERLDSAIIYDRDFNYNYMGFKTLERSYLLKIN 191 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 G +E PQ MRVA+G+ + + +E Y+ LS +F ++PTLFN+ T++ Q+SS Sbjct: 192 GKIVERPQHMLMRVAVGIH---EDDINKVIETYDYLSERYFTHASPTLFNACTKNQQMSS 248 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL T+ DD + GI+G L++ A+++KY+GG+G + +R + G+I LK Sbjct: 249 CFLLTLNDDSIKGIYGTLKKCALISKYAGGIGINVHCIRAKDTDDTYDTDATNGLISVLK 308 Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + ND A+ V+QG KR GA YLE WH D+ +FL+L++N GD R D+ A W+PDL Sbjct: 309 LYNDIAIYVDQGGNKRPGAFAVYLEPWHADIFDFLELKRNIGDGNLRARDLFYALWVPDL 368 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV + W+L P E L D++G EF Y YE+ E + R++ A +W Sbjct: 369 FMERVFDDEVWSLMCPYESPGLADVWGDEFNELYTRYEK-----EGRYKRQVQARDVWVT 423 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--N 606 +L ETG P++ +KD CN +S QH+G + SNLCTEI SS EE AVCNL SI N Sbjct: 424 ILRSQVETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCTEIVEYSSPEEVAVCNLASIALN 483 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + + FD+DKL + ++ R LD VID+N + I + K+SN HR IG+G+ G A Sbjct: 484 MFVNTNKKTFDFDKLKTVVKIVTRNLDKVIDVNFYPIPETKRSNRRHRPIGIGVQGLADA 543 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L+ P+ S EA E+ + E + + A+ AS ELA E+G Y +++GS +G+ D Sbjct: 544 FLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYETYEGSPVSKGILQYDMW 603 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + T WDELK ++ G+RNS +A PTA+ A I G ++SI+ Sbjct: 604 N----------VKPTDLWDWDELKTKIAKHGVRNSLLIAPMPTASTAQILGNNESIEAYT 653 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 N+YV+ +SG+F ++N L+ +L R LW + M +++ + GS+ NIERIPDDLK+++ Sbjct: 654 SNIYVRRVLSGEFVIINPHLLRDLTVRGLWGKDMQNEILANFGSVQNIERIPDDLKELYK 713 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 T +EI ++E A+ R +IDQ+QSLN+++ +PS +KL ++ W GLKT YYLR+ Sbjct: 714 TVWEISQKVILEMAADRGAFIDQSQSLNIHIADPSTEKLTSMHFFGWRSGLKTGMYYLRT 773 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 + A + + T+ + + + + + P ++E Sbjct: 774 KPAANPIQFTVDKSKLQSRDSLSSSTSDISSPIKSPDKDADNSE 817 >gi|281204858|gb|EFA79053.1| ribonucleotide reductase large subunit [Polysphondylium pallidum PN500] Length = 868 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 282/831 (33%), Positives = 430/831 (51%), Gaps = 39/831 (4%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYK 187 + SK + K+ ++ DGT S ++ ++ C + + V + Sbjct: 9 NTSKEQSTPNSKMYVIKRDGTKASVQYDKITQRLQSLCDLEPKLNGEVIDPSEVTQKVAS 68 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 ++ G+ ++L+ ++ + K P+Y + AR + L ++ ++ + +K Sbjct: 69 GVFPGVKTTELDNLAAETAAYMSTKHPDYGVLAARISVSNLHKQTSSSFLETVEK----- 123 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 + + + +++ L + Y RDF +++ G + L Y Sbjct: 124 ---QHSFTNPKTGQPAPLVSDELYNLVKIHHKRLEEAIDYRRDFEYDFFGFKTLERSYLH 180 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 IN IE PQ MRV++G+ + A+E YNLLS F +TPTLFNSGT PQ Sbjct: 181 RINDIIIERPQQMLMRVSIGIHGDD---IDSAIETYNLLSQRLFTHATPTLFNSGTPSPQ 237 Query: 368 LSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +SSCFL + D + GI+ L++ A+++K +GG+G +R ++I GTNG S G++P Sbjct: 238 MSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAARSYIRGTNGTSNGLVP 297 Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+V NDTA V+QGG KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+ Sbjct: 298 MLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALWV 357 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 DLFM+RV + W LF P+E L D +G EF YE YE R I A L Sbjct: 358 SDLFMERVENDDVWNLFCPNEAPGLADCWGDEFRALYEKYE----NTPGLSRRTIKAQDL 413 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ETG P+ +KD CN +S QQ++G + SNLCTEI +S++E AVCNL SI Sbjct: 414 WFTIIESQIETGTPYFLYKDACNSKSNQQNLGTIQCSNLCTEIIQYTSADEVAVCNLASI 473 Query: 606 NLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 L + N+ FD+ L +T R L+ +ID N + + +A+ SN HR IG+G Sbjct: 474 ALPKYVRENKETGKPEFDHQYLFEVTKTITRNLNKIIDRNYYPVLEARNSNFRHRPIGIG 533 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G L +P+ S A + E E I F A++AS ELA+ G Y SFKGS +G Sbjct: 534 IQGLADVFIRLRLPFESNGAAILNKEIAETIYFAALTASAELAERDGPYESFKGSPASKG 593 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D + R W LK+++ + G+RNS +A PTA+ + I G + Sbjct: 594 TLQQDFWNVTPSPR----------WDWTSLKQKIISTGLRNSLLIAPMPTASTSQILGNN 643 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 ++ +P N+Y + ++G+FTVVN L+ +L DLW M + + H GSI NIE IPD Sbjct: 644 EAFEPYTSNIYSRRVLAGEFTVVNKQLLQDLMDLDLWTPEMKNQIIAHRGSIQNIEDIPD 703 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK+++ T +EI LI+ A+ R +IDQ+QS N+++ EP+ +KL ++ AW GLKT Sbjct: 704 DLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFQKLTSMHFYAWKKGLKT 763 Query: 900 -TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 YYLR+R+A + T+ + ++ PS+ Sbjct: 764 GMYYLRTRAAADAIQFTVDQTMLANKEQKDANATATADGAQPPSTPIRTPT 814 >gi|187903102|ref|YP_001883393.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca domestica salivary gland hypertrophy virus] gi|187384751|gb|ACD03524.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca domestica salivary gland hypertrophy virus] Length = 785 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 275/825 (33%), Positives = 434/825 (52%), Gaps = 55/825 (6%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESD 197 P KL + G + ++ +E C L V ++ + +Y G++ ++ Sbjct: 3 PNNTKLFVTKRGGFVQDIVFDKIRKRIESLCYNLNADYVHPSTIVVKVVAGLYPGVTTAE 62 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+T ++ +++ P+Y + AR + + ++ + + M+ LY Sbjct: 63 LDTLAAETAASMMTLHPDYGVLAARIAISNMHKQTDDSFART--------MKELYAAGLI 114 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 V R L + + DF + Y G++ L Y +HI +E P Sbjct: 115 SMFHYDVVCR---------HGRTLDEAIVHANDFNYSYFGIKTLERSYLMHIKDRLVERP 165 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q MR A+G+ E +E YN +S +F +TPTLF++ T PQLSSC+L T+ Sbjct: 166 QYLLMRCALGIHG---ENIDAVIETYNYMSRHYFTHATPTLFSAATPKPQLSSCYLLTIK 222 Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + GIF + + A ++K +GG+G + +R G+ I GTNGKS G++P L+V N+ A Sbjct: 223 GDSIDGIFRTVADCAAISKTAGGIGLNVHDIRARGSPIDGTNGKSNGLVPMLRVFNNVAR 282 Query: 437 AVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGG KR G+ YLE WH D+ EFLDLRKN G + +R D+ A WIPDLFM+RV Q Sbjct: 283 YVDQGGGKRMGSFAIYLEPWHADIFEFLDLRKNHGIEEQRARDLFYALWIPDLFMRRVEQ 342 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W+L P + L +++G+ FE YE+YER + + R + A ALW ++ E Sbjct: 343 DGDWSLMCPHKCPCLSEVWGESFEHLYEHYER-----KGRAVRTVKARALWHAIIESQVE 397 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----- 610 TG P++ +KD CN +S QQ++G + SNLCTEI ++ +E AVCNL S+ L Sbjct: 398 TGTPYMMYKDACNRKSNQQNLGTIRCSNLCTEIVEYTAPDEIAVCNLASLALPKFVVSGT 457 Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 FD+++L + R L+ +IDIN + + +A++SN HR IG+G+ G L Sbjct: 458 PDRPKHFDFEQLRRIVHVVTRNLNRIIDINYYPVPEARRSNLRHRPIGIGVQGLADTFVL 517 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + +PY S EA E+ E I F A+ S +LA+E G Y SF GS G D Sbjct: 518 MGMPYESDEARELNRRIFETIYFAALETSCQLAKEEGVYDSFLGSPASIGTLQQDMW--- 574 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + ++ WDEL+ ++ G+RNS +A PTA+ A I G ++S +P N+ Sbjct: 575 -----PVDVDDKPMWNWDELRHNIEMNGLRNSLLVAPMPTASTAQILGNTESFEPITSNI 629 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 YV+ +SG+F V+N LV L LW E+M + + GS+ +IE IP ++++++ T + Sbjct: 630 YVRRVLSGEFQVINRHLVQHLIDLGLWSESMRNRIIARRGSVQDIEEIPIEVRRLYKTVW 689 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI +I+ A+ R ++IDQ+QSLN+++ EP+ KL ++ AW GLKT YYLR+++A Sbjct: 690 EISGRRIIDMAADRGRYIDQSQSLNMHVAEPNYAKLSSMHFYAWRAGLKTGMYYLRTKAA 749 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + T+ G ++ T +CT EC C Sbjct: 750 ANAIQFTVDSSSGVSSSASSTQD---------GPACTR--ECLSC 783 >gi|447146|prf||1913428A ribonucleotide reductase:SUBUNIT=large Length = 811 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 286/835 (34%), Positives = 445/835 (53%), Gaps = 52/835 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+ K P+YA + AR + L ++ +K +Q L+ + + Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQT--------EKVFSTVVQQLHDYVNPKTDKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ L + + Y+RDF + + G + L Y L I+G E PQ M Sbjct: 113 APMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ E + A+E YNL+S +F ++PTLFN+GT PQLSSCFL T+ DD + Sbjct: 173 RVAVGIHG---EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ AM++K +G L + +R G++I GTNG S G++P ++V N+TA V+QG Sbjct: 230 GIYDTLKMCAMISKTAGVLVFNIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA AYLE WH DV +FL+LRK G++ R M A WIPDLFM+RV +N WT Sbjct: 290 GNKRPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F P+E L D++G EF YE YE+ E + R + A +W +L ETG+P+ Sbjct: 350 FFCPNEAPGLADVWGDEFVALYEKYEK-----ENRGRRSLPAQKVWYAILQSQVETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S Q++VG + SSNLCTEI SS +E AVCNL S+ L + ++++ K Sbjct: 405 MLYKDSCNRKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ R L+ +ID+N + + +A++SN HR +GLG+ G A L +P+ S A Sbjct: 465 LHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I A+ AS E+AQ G Y S++GS QG+ D +N Sbjct: 525 KLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWN----------VNP 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W E K+++ G+RNS +A PTA+ + I G ++ +P N+Y + +SG+F Sbjct: 575 TDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN +L+ +L +RDLW+E M + L DGSI I IP DLK ++ T +EI +I+ A Sbjct: 635 IVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYA 694 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QSLN++L +PS K+ ++ W GLKT YYLR+ +A++ K T+ V Sbjct: 695 ADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV 754 Query: 920 ---------------------DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +++A P + + + S + CE+C Sbjct: 755 ALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMC 809 >gi|18266787|sp|O61065|RIR1_CRYPV RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase R1 subunit gi|8365757|gb|AAC12280.2| ribonucleotide reductase R1 subunit [Cryptosporidium parvum] gi|32398776|emb|CAD98486.1| ribonucleoside-diphosphate reductase large chain [Cryptosporidium parvum] Length = 803 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 273/827 (33%), Positives = 442/827 (53%), Gaps = 44/827 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + ++ + + GL V V +Y G+ S+L+ Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGLHPLVDPARVTQAVINGLYSGIKTSELDELAS 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + +++K+ AR L + + + + + + P I + Sbjct: 61 QTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYNFKDNQGCP---APLISKP 117 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 V ++ + + + + + +DF ++Y + L Y L I+ +E PQ MR Sbjct: 118 VYDFIM------ENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMR 171 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 V+ G+ + E A+E Y LLS +F +TPTLFNSGT PQ+SSCFL +P D + G Sbjct: 172 VSCGIHCGDIE---AALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSING 228 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF L + A ++K +GGLG + +RG G++I GTNG+S G+IP L+V NDTA ++QGG Sbjct: 229 IFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGG 288 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKGA+ YLE WH+DV EF+++RKN G + R D+ A W+PDLFM+RV ++ WTL Sbjct: 289 GKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTL 348 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 PDE L D++G +F+ YE YE+Q + + + A LW +L ETG P+I Sbjct: 349 MCPDECRGLQDVWGDDFKKLYEEYEKQ-----GRGRKTMKAQKLWFLILQAQIETGTPFI 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYD 619 +KD N +S Q+++G + SSNLCTEI +S++E AVCNL SI L N FD+D Sbjct: 404 CYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTFDFD 463 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + R L+ +ID+ +++++ KKSN HR +G+G+ G +L +PY S A Sbjct: 464 KLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGA 523 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ + E I + A+ AS ELA++ G Y ++ GS +G+ D G+ + Sbjct: 524 KKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD-------- 575 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + WD LK R+ G+RNS ++ PTA+ + I G ++S +P N+Y + +SG+F Sbjct: 576 -SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEF 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+N+L + LWD+ + ++ ++GSI NI IP+D+++++ T +EI +I+ Sbjct: 635 FVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R ++ Q+QSLN++++ + KL ++ W GLKT YYLR++SAT + T+ Sbjct: 695 AADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQ 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSS------------CTSDTECEVC 953 K ++ P + D EC +C Sbjct: 755 QLLKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801 >gi|66475480|ref|XP_627556.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal PFL-like glycyl radical enzymes-like fold [Cryptosporidium parvum Iowa II] gi|46229284|gb|EAK90133.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal PFL-like glycyl radical enzymes-like fold [Cryptosporidium parvum Iowa II] Length = 804 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 273/827 (33%), Positives = 442/827 (53%), Gaps = 44/827 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + ++ + + GL V V +Y G+ S+L+ Sbjct: 2 MYVVNRKGEEEPVSFDQILSRITKLSYGLHPLVDPARVTQAVINGLYSGIKTSELDELAS 61 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + +++K+ AR L + + + + + + P I + Sbjct: 62 QTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYNFKDNQGCP---APLISKP 118 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 V ++ + + + + + +DF ++Y + L Y L I+ +E PQ MR Sbjct: 119 VYDFIM------ENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMR 172 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 V+ G+ + E A+E Y LLS +F +TPTLFNSGT PQ+SSCFL +P D + G Sbjct: 173 VSCGIHCGDIE---AALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSING 229 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF L + A ++K +GGLG + +RG G++I GTNG+S G+IP L+V NDTA ++QGG Sbjct: 230 IFDTLTKCANISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGG 289 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKGA+ YLE WH+DV EF+++RKN G + R D+ A W+PDLFM+RV ++ WTL Sbjct: 290 GKRKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTL 349 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 PDE L D++G +F+ YE YE+Q + + + A LW +L ETG P+I Sbjct: 350 MCPDECRGLQDVWGDDFKKLYEEYEKQ-----GRGRKTMKAQKLWFLILQAQIETGTPFI 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYD 619 +KD N +S Q+++G + SSNLCTEI +S++E AVCNL SI L N FD+D Sbjct: 405 CYKDAANSKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTFDFD 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + R L+ +ID+ +++++ KKSN HR +G+G+ G +L +PY S A Sbjct: 465 KLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ + E I + A+ AS ELA++ G Y ++ GS +G+ D G+ + Sbjct: 525 KKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD-------- 576 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + WD LK R+ G+RNS ++ PTA+ + I G ++S +P N+Y + +SG+F Sbjct: 577 -SGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEF 635 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+N+L + LWD+ + ++ ++GSI NI IP+D+++++ T +EI +I+ Sbjct: 636 FVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDM 695 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R ++ Q+QSLN++++ + KL ++ W GLKT YYLR++SAT + T+ Sbjct: 696 AADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQ 755 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSS------------CTSDTECEVC 953 K ++ P + D EC +C Sbjct: 756 QLLKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 802 >gi|326502586|dbj|BAJ95356.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 812 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 283/836 (33%), Positives = 441/836 (52%), Gaps = 53/836 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQEAVHFDKITARLKKLAYGLSQDHCDPVLVAQKVCAGVYRGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + + +Y + R Sbjct: 61 AETAAAMTASHPDYASLAARIAVSNLHKNTMKSFSETV--------KVMYTHFNERSGLM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF +++ G + L Y L + G +E PQ M Sbjct: 113 APLIADDVYEIIMKNATRLDSEIIYDRDFDYDFFGFKTLERSYLLKVGGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + AV+ Y+++S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KDDIESAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L E A ++K +GG+G VR G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLSECASISKSAGGIGVSIHNVRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A WIPDLFM+RV +N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIYEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQKNEQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G EF+ Y YER E K + +SA +LW ++L ETG P+ Sbjct: 350 LFCPSEAPGLADCWGDEFQNLYNKYER-----EGKAKKIVSAQSLWFEILKAQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + +KD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MLYKDSCNRKSNQQNLGTIKSSNLCTEIVEFTSPTETAVCNLASIALPRFVREKGVPIES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA L+ +IDIN + IE A++SN HR IG+G+ Sbjct: 465 HPAKLVGSIGSKNRYFDFDKLAEITSVVTWNLNKIIDINYYPIETARRSNMRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL +P+ SPEA ++ + E I +HA+ AS E+A + G Y ++ G +G+ Sbjct: 525 QGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYDGCPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D ++ R W ++ + +G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWNVVPSDR----------WDWPAIRGMISKVGLRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + +W + +++ Y DGS+ I IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNNIIYDDGSVQKITEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI +++ A R +IDQ+QSLN+++D+ + KL ++ W GLKT Sbjct: 695 LKAIYKTVWEIKQKTVVDMAVDRGCYIDQSQSLNIHMDQANSGKLTSLHFHTWSKGLKTG 754 Query: 900 TYYLRSRSATSVEKSTLKGV--DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R+A K T+ K A + + + S + +C C Sbjct: 755 MYYLRTRAAADAIKFTVDTSLLKDKKPANAEEEEDLEAKMAQVTCSLNNREDCLAC 810 >gi|294871762|ref|XP_002766029.1| ribonucleoside-diphosphate reductase large chain, putative [Perkinsus marinus ATCC 50983] gi|239866594|gb|EEQ98746.1| ribonucleoside-diphosphate reductase large chain, putative [Perkinsus marinus ATCC 50983] Length = 1504 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 268/791 (33%), Positives = 433/791 (54%), Gaps = 35/791 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 + ++ +G ++ + GL + V + + + +Y G++ ++L++ Sbjct: 2 VMYVIKRNGQKADVQFDKITKRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + + + P+++ + AR + L + + + + + Sbjct: 62 AAETCAYMSQVHPDFSTLAARIAVSNLHKNTHESFSETITELYNITDSRG---------R 112 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319 +++ + L + Y+RDF ++Y G + L Y L + + IE PQ Sbjct: 113 SSPLVSEEVYNIVKMNADKLDKAIDYDRDFDYDYFGFKTLERSYLLKRPSDKTCIERPQH 172 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378 MRVA+G+ + A+E Y L+S+ F +TPTLFNSGT HPQ+SSCFL ++ D Sbjct: 173 MIMRVAVGIHGDD---VDAAIETYALMSTRVFTHATPTLFNSGTPHPQMSSCFLLSIKED 229 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ AM++K +GG+G T +R ++I GTNG S G++P L+V NDTA V Sbjct: 230 SIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTARYV 289 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKG+ YLE WH DV EFLDL+KN G + R D+ A WIPDLFMKRV N Sbjct: 290 DQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANG 349 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTLF P+E L D YG+EFE YE YE+ + + + A +LW K+L ETG Sbjct: 350 DWTLFCPNEAPGLQDTYGEEFEALYEKYEK-----DGIGRKTVKAQSLWFKILESQQETG 404 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615 P++ +KD N +S Q+++G + SNLC EI +SS+E AVCNL SI N+ Sbjct: 405 IPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSSDEVAVCNLASIALNMFVDKKTRT 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +D+D+L + + L+ VID N + + +A+KSN HR IG+G+ G A L+ PY Sbjct: 465 YDFDRLHRVAKVVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRYPYE 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 SPEA+++ ++ E I A AS+ELA+ G Y +F+GS +G+ D ++ + Sbjct: 525 SPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVIPD---- 580 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + R W LK+ +K GMRNS +A PTA+ A I G +++ +P QN+YV+ + Sbjct: 581 -----SGRWDWASLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRVL 635 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +G+F VN LV++L + LW++ + + GS+ +E IP +++ ++ T +EI Sbjct: 636 AGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPSEIQDLYKTVWEIKQKK 695 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +++ A+ R +IDQ+QSLN+++ + KL ++ W +GLKT YYLR+++A + Sbjct: 696 ILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQF 755 Query: 915 TLKGVDGKLNA 925 TL + + Sbjct: 756 TLDAKKVTVES 766 >gi|71422050|ref|XP_812008.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi strain CL Brener] gi|70876737|gb|EAN90157.1| ribonucleoside-diphosphate reductase large chain, putative [Trypanosoma cruzi] Length = 796 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 287/825 (34%), Positives = 433/825 (52%), Gaps = 44/825 (5%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198 +A L + DG+L SF++ +L +E GL V KI+ ++D +S +L Sbjct: 2 LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + + ++ + K P+Y + R + L + +V + L+ Sbjct: 62 DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLET--------FSILHKHKIHD 113 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-----FLHINGSR 313 ++ L + Y+RD FE+ G + L Y Sbjct: 114 TGRAAPLLSDEVWEVVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGEREI 173 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E PQ F+RVA+G+ ++ E+ E Y+ +S F +TPTLFN+GT PQ+SSCFL Sbjct: 174 AERPQQMFLRVALGIHGEDMERV---KETYDHMSLGDFTHATPTLFNAGTPFPQMSSCFL 230 Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + D + GI+ L++ A+++K +GG+G +R G++I GTNG+S G++P L+V N Sbjct: 231 VAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLRVWN 290 Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 +TA V+QGG KRKGA YLE WH D+ FL L+KNTG + R D+ A WIPDLFM+ Sbjct: 291 NTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFME 350 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV WTL P L D YG +F+ YE YER E + + + A +LW +L Sbjct: 351 RVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYER-----ENRGVKTVQAQSLWFAILE 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH- 610 ETG P++ +KD CN +S Q++VGV+ SNLCTEI +S +E AVCNL SI L Sbjct: 406 SQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFV 465 Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +D+ +L + + L+ VID N + + ++++SN +R IG+G+ G L Sbjct: 466 DKERRIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFIL 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + +P+ EA + ++ E I + A+ ASVELA+ G Y+ F GS QG D Sbjct: 526 MRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQK 585 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ R WD LKKR+ GMRNS +A PTA+ + I G ++ +P N+ Sbjct: 586 P---------RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 YV+ +SG+F VVN +LV +L +R LW+E M + + ++GS+ NI IP+DLK+++ + Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI LIE A R K+IDQ+QSLNL+L+ P+ +L ++ AW GLKT YYLRS+ A Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPA 756 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K T+ K + S+ S+ +C C Sbjct: 757 ADAIKFTVDPNTLK-------GLVKEDDRKQVSSATPSNEDCLNC 794 >gi|294941788|ref|XP_002783240.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] gi|239895655|gb|EER15036.1| ribonucleoside-diphosphate reductase, large subunit, putative [Perkinsus marinus ATCC 50983] Length = 792 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 270/819 (32%), Positives = 434/819 (52%), Gaps = 39/819 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 + ++ +G ++ + GL + V + + + +Y G++ ++L++ Sbjct: 2 VMYVIKRNGQKADVQFDKITKRIRPLTRGLNEDYVDVTQITQKVAEGIYPGVTTTELDSL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + + + P+++ + AR + L + + + + + Sbjct: 62 AAETCAYMSQVHPDFSTLAARIAVSNLHKNTHESFSETVTELYNITDSRG---------R 112 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319 +++ + L + Y+RDF ++Y G + L Y L + + IE PQ Sbjct: 113 SSPLVSEEVYNLVLMNADKLDKAIDYDRDFDYDYFGFKTLERSYLLKRPSDKTCIERPQH 172 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PD 378 MRVA+G+ + A+E Y L+S+ F +TPTLFNSGT HPQ+SSCFL ++ D Sbjct: 173 MIMRVAVGIHGDD---VDAAIETYALMSTRVFTHATPTLFNSGTPHPQMSSCFLLSIKED 229 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ AM++K +GG+G T +R ++I GTNG S G++P L+V NDTA V Sbjct: 230 SIEGIYDTLKQCAMISKTAGGIGVAITGIRATESYIRGTNGFSNGIVPMLRVFNDTARYV 289 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKG+ YLE WH DV EFLDL+KN G + R D+ A WIPDLFMKRV N Sbjct: 290 DQGGGKRKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANG 349 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTLF P+E L D YG EFE YE YE+ + + + A +LW K+L ETG Sbjct: 350 DWTLFCPNEAPGLQDTYGDEFEALYEKYEK-----DGIGRKTVKAQSLWFKILESQQETG 404 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQ 615 P++ +KD N +S Q+++G + SNLC EI +S +E AVCNL SI N+ Sbjct: 405 IPYMLYKDSANRKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKKTRT 464 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +D+ +L + + L+ VID N + + +A+KSN HR IG+G+ G A L+ PY Sbjct: 465 YDFGRLHRVAKVVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRFPYE 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 SPEA+++ ++ E I A AS+ELA+ G Y +F+GS +G+ D + + Sbjct: 525 SPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVTPD---- 580 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + R W LK+ VK GMRNS +A PTA+ A I G +++ +P QN+YV+ + Sbjct: 581 -----SGRWDWASLKEEVKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRVL 635 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +G+F VN LV++L + LW++ + + GS+ +E IP +++ ++ T +EI Sbjct: 636 AGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPMEIQALYRTVWEIKQKK 695 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +++ A+ R +IDQ+QSLN+++ + KL ++ W +GLKT YYLR+++A + Sbjct: 696 ILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQF 755 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 TL + + + L + C C Sbjct: 756 TLDAKKVTVE----SPLKPRSSPLKPQYVQEDEETCIAC 790 >gi|328875304|gb|EGG23669.1| ribonucleotide reductase large subunit [Dictyostelium fasciculatum] Length = 942 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 265/834 (31%), Positives = 430/834 (51%), Gaps = 63/834 (7%) Query: 123 EERSDVRAAQSHSKSDAPIAP------KLKIMMDDGTLI------------------SFN 158 + + +S + K+ ++ DGT + Sbjct: 46 AQHTSNDEQKSQKNVVDSKSEITNTPGKMFVVKRDGTRVAVCNRPTSTQLYFYKKEIDVK 105 Query: 159 SKRLEMIVEEACS-----GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 ++ ++ C + + + ++ G+ ++L+ ++ + K Sbjct: 106 YDKITTRLQYLCDLEPKLDTNIIDPSEITQKVASGVFPGVKTTELDNLAAETAAYMSTKH 165 Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P+YA + AR + L ++ + + + + + ++ Sbjct: 166 PDYAVLAARIAVSNLHKQTHESFLETVKL--------QHGYVSPKTGAPAPLVSDEILAL 217 Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKET 333 + + + +KY RDF +++ G + L Y +N IE PQ MRV++G+ + Sbjct: 218 ANKHVDRIEAAIKYTRDFEYDFFGFKTLERSYLHRVNDMIIERPQHLLMRVSLGIHGDD- 276 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAM 392 A++ Y+ LS+ +F +TPTLFN+GT PQ+SSCFL + DD + GI+ L++ A+ Sbjct: 277 --IDAAIDTYDQLSNRYFTHATPTLFNAGTNSPQMSSCFLVQMKDDSIEGIYDTLKQCAL 334 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAY 451 ++K +GG+G +R ++I GTNG S G++P L+V NDTA V+QGG KRKGA Y Sbjct: 335 ISKSAGGIGIAVHKIRAARSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAVY 394 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 LE WH D+ EFLDL+KN G + R D+ A W+ DLFM+RV QNA W+LF P+E L Sbjct: 395 LEPWHSDIFEFLDLKKNHGKEEMRARDLFYALWVSDLFMERVEQNAEWSLFCPNEAPGLA 454 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 D YG +F Y +YE+ + + A LW ++ ETG P+I +KD CN +S Sbjct: 455 DCYGDKFRDLYLSYEQ----TPGLARKVVKAQDLWFAIIDSQIETGTPYILYKDACNEKS 510 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------FDYDKLASTI 625 Q+++G + SNLCTEI +S++E AVCNL SI L + FD++ LA Sbjct: 511 NQKNLGTIQCSNLCTEIIQYTSADEVAVCNLASIALPKFVKRSSPSAVASFDHNHLAEIT 570 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R R L+ +ID N + +E+A++SN HR G+G+ G L +P+ SP A + E Sbjct: 571 RIITRNLNKIIDRNFYPVEEARRSNMRHRPTGIGIQGLADVFIALRMPFDSPAAAVLNKE 630 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E I + ++ AS +LA+ G Y +F GS QG+ D + ++R Sbjct: 631 IAETIYYASLDASCQLAERDGPYETFAGSPASQGILQFDMW----------DVQPSARWD 680 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK+R+ G+RNS +A PTA+ + I G ++ +P N+Y + ++G+FTVVN Sbjct: 681 WAALKQRIVKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRKVLAGEFTVVNKQ 740 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L+ +L LW M + + + GS+ N++ IPDDLK+++ +A+EI LI+ A+ R Sbjct: 741 LLQDLMALGLWTPEMKNQIIANRGSVQNVQGIPDDLKELYKSAWEIRQRTLIDMAADRGA 800 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 +IDQ+QS N+++ EP+ KL ++ AW GLKT YYLR+R+A + T+ Sbjct: 801 FIDQSQSFNVFIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTRAAADAIQFTVDQ 854 >gi|307180389|gb|EFN68415.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus floridanus] Length = 889 Score = 669 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 277/823 (33%), Positives = 440/823 (53%), Gaps = 35/823 (4%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMY 190 S K+ ++ +G + ++ + + C L V V + + +Y Sbjct: 20 SKMPVKEIGRGKMHVIKRNGRKEDVHFDKITSRIAKQCYNLDMNYVDPSAVAIQVIRGLY 79 Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 G++ L+ ++ T+ P+YA + AR + L +E K M Sbjct: 80 SGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKETKKNFSKV--------MHD 131 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 LY + + +++ + L + + Y+RDF++ Y+G + L Y L IN Sbjct: 132 LYHARDSVTNQHTPIINERYYNIIKNNAEKLDSAIIYDRDFSYNYIGFKTLERSYLLKIN 191 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 G +E PQ MRVA+G+ +A+E YN LS +F ++PTLFN+ T + Q+SS Sbjct: 192 GKIVERPQHMLMRVAVGIH---ETDIDKAIETYNYLSERYFTHASPTLFNACTNNQQMSS 248 Query: 371 CFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL T+ D + GIFG L++ A+++KY+GG+G + +R + + G++ LK Sbjct: 249 CFLLTLDNDSIKGIFGTLKKCALISKYAGGIGLNVHCIRAKSTEDNTD--TTNGLVSVLK 306 Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + ND A+ V+QG KR GA YLE WH D+ +FL+LR+N GD R D+ WIPDL Sbjct: 307 LYNDMAIYVDQGGNKRPGAFAIYLEPWHADIFDFLELRRNIGDGNMRARDLFYGLWIPDL 366 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV N W+L P E L D++G EF+ Y YE+ E + +++ A A+W Sbjct: 367 FMERVYNNENWSLMCPHESPGLADVWGDEFKELYIRYEK-----EGRYKKQVEARAVWVA 421 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--N 606 +L ETG P++ +KD CN +S QH+G + SNLCTE+ S E AVCNL SI N Sbjct: 422 ILRSQVETGTPYMLYKDHCNRKSNHQHIGTIKCSNLCTEVIQYSGPGEVAVCNLASIAVN 481 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + + N FD+DKL + + R LD VID+N + I + K SN HR IG+G+ G A Sbjct: 482 MFVNTNNKTFDFDKLKTIAKVVTRNLDKVIDVNFYPIVETKTSNQKHRPIGIGIQGLADA 541 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L+ P+ S EA E+ + E + + A+ AS +LA E+G Y +++GS +G+ D Sbjct: 542 FLLMRYPFESKEAKELNIKIFETLYYGALEASCKLAAEKGTYETYEGSPVSKGILQYDMW 601 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + T+ WD+LK+++ G+RNS +A PTA+ A I G ++SI+P Sbjct: 602 N----------VKPTNLWDWDKLKEKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYT 651 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 N+YV+ +SG+F +VN L+ +L R LWDE M +++ GS+ NI+RIPDDLK ++ Sbjct: 652 SNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEILASFGSVQNIDRIPDDLKVLYK 711 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 T +EI ++E A+ R +IDQ+QSLN+++ +P+ +KL ++ W GLKT YYLR+ Sbjct: 712 TVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEKLTSMHFFGWRSGLKTGMYYLRT 771 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 + A + + T+ + N + + + P+ + Sbjct: 772 KPAANPIQFTVDKSKLRNNDSISSASTVNNTPIQSPNKDDDND 814 >gi|254521985|ref|ZP_05134040.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] gi|219719576|gb|EED38101.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] Length = 800 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 326/841 (38%), Positives = 468/841 (55%), Gaps = 53/841 (6%) Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVL 182 E + + + P A + + +GT + ++ V+ + GL V V Sbjct: 4 ESSATIEKESEFLLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVA 63 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 + T +Y+G + +L+ I ++ LI +EP Y ++ AR L + +EV Sbjct: 64 TRTISGLYNGATTRELDELSIRTAALLIGEEPEYGRLAARLLANYIAKEVSGQEI----- 118 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQ 299 F + + G + L+++ +++F + L + + D F+Y GL+ Sbjct: 119 -----------YAFSQSVSRGHEVGLINDRLLNFVQTNARKLNDAIDGALDLNFDYFGLR 167 Query: 300 ILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 LYDRY L IE PQ FF+R+A L+ E + Y + + ++ S+PT Sbjct: 168 TLYDRYLLRHPHTRKVIETPQQFFLRIASALS----EDVSETLALYKRMGNLDYLPSSPT 223 Query: 358 LFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 LFNSGT H QLSSCFL D L I+ + A L+K+SGG+G +T VR G+ I Sbjct: 224 LFNSGTTHEQLSSCFLLDSPQDSLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKS 283 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 TNG S G++P+LK + + AVNQGGKRKGA C YLETWH DVE+FL+LR NTGD+ RR Sbjct: 284 TNGHSNGIVPWLKTMDSSVAAVNQGGKRKGAACVYLETWHADVEDFLELRDNTGDEARRA 343 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 H++N ANW+PDLFMKRV + W+LF P V + DL+G+ FE AY E Q K Sbjct: 344 HNLNLANWVPDLFMKRVEADQEWSLFDPRVVPEFTDLFGEAFEAAYLQAEAQ-----GKA 398 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSS 594 R ISA L+ +M+ L ETG+ W+TFKD CN S Q + V+H SNLCTEI +S+ Sbjct: 399 NRTISARKLYARMMRTLAETGNGWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSN 458 Query: 595 EETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 +ETAVCNLGSINL HF + FD++KLA T+R AVR LD VID+N + IE A+++N Sbjct: 459 DETAVCNLGSINLGNHFDEHNEFDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRW 518 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +GLG MG Q +P+ S EA ++ + E I FHA+ S ELAQERG + SF Sbjct: 519 RPVGLGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFND 578 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + G D+ ++ E WD L++R+K G+RNS +AIAPTATIA Sbjct: 579 TRAASGELQFDAWNVVPEDTAR----------WDALRERIKEHGLRNSLMIAIAPTATIA 628 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 +I G + ++P NL+ + +SGDF VN +LVNELK+ LW M +K +GSI Sbjct: 629 SIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAG 688 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 + +IP+ L++++ TA+E+ LI+ A+ R +IDQ+ SLNL+++ P+ + +Y AW Sbjct: 689 VAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAW 748 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 G+KTTYYLRSR AT + K+T+ + I S + CE C Sbjct: 749 KQGIKTTYYLRSRPATKIAKTTVS---------TAAPAKVFSPDEAIACSLENPEACEAC 799 Query: 954 Q 954 Q Sbjct: 800 Q 800 Score = 39.8 bits (91), Expect = 2.1, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 + + P + V KRNG D +KI RA+ + + EG A Sbjct: 2 STESSATIEKESEFLLTSPPTANAMSVTKRNGTTELVDLNKIVRAVQR---SSEGLHAVD 58 Query: 65 SIRV 68 +RV Sbjct: 59 PMRV 62 >gi|297797920|ref|XP_002866844.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312680|gb|EFH43103.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 807 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 281/803 (34%), Positives = 433/803 (53%), Gaps = 57/803 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGKQETVHFDKITARLKKLSYGLSIDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + H Sbjct: 61 AETAAAMTANHPDYASLAARIAVSNLHKNTKKSFSETVRDMYSH-----------VNERS 109 Query: 263 GVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 G+ + L+ + + L +++ Y+RDF ++Y G + L Y L + G +E PQ Sbjct: 110 GLASPLIAADVYEIIMKHATRLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGKVVERPQH 169 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 MRV++G+ E A++ Y+L+S F ++PTLFNSGT QLSSCFL + DD Sbjct: 170 MLMRVSVGIH---KEDIDSAIKTYHLMSQRWFTHASPTLFNSGTPRAQLSSCFLICMKDD 226 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V Sbjct: 227 SIEGIYDTLKECAVISKSAGGIGVSIHNIRATGSYIRGTNGASNGIVPMLRVFNDTARYV 286 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH D+ +FL+LRKN G + R D+ WIPDLFM+RV + Sbjct: 287 DQGGGKRKGAFAVYLEPWHADIFDFLELRKNHGKEEHRARDLFYGLWIPDLFMERVQTDG 346 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P+E L D +G EFE Y YE Q K + + A LW ++LT ETG Sbjct: 347 QWSLFCPNEAPGLADCWGAEFERLYTQYENQ-----GKAKKVVQAQQLWYEILTSQVETG 401 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611 P++ FKD CN +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 402 TPYMLFKDSCNSKSNQQNLGTIKSSNLCTEILEYTSPTETAVCNLASIALPRFVRENDIP 461 Query: 612 --------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 N FD+DKLA T L+ +ID+N + +E AK SN HR IG Sbjct: 462 LDSHPSKIVGSLDSKNRYFDFDKLAEVTATVTVNLNKIIDVNHYPVETAKTSNMRHRPIG 521 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G+ G A LL +P+ SPE+ ++ + E I +HA+ +S E+A + G Y +++GS Sbjct: 522 IGVQGLADAFILLGMPFDSPESQQLNKDIFETIYYHALKSSSEIATKEGTYETYQGSPVS 581 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 +G+ D ++ R W L+ + G+RNS +A PTA+ + I G Sbjct: 582 KGILQPDMWNVIPSDR----------WDWAALRDMISKNGIRNSLLVAPMPTASTSQILG 631 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 ++ +P N+Y + +SG+F VVN L+++L LW + + + + +GSI N++ I Sbjct: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWSPTLKNKIIHENGSIVNVKEI 691 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 PDDLK I+ T +EI +++ A+ R +IDQ+QSLN+++++P+ KL ++ AW GL Sbjct: 692 PDDLKAIYRTVWEIKQRTVVDMAADRGCFIDQSQSLNIHMEKPNFAKLTSLHFYAWKKGL 751 Query: 898 KT-TYYLRSRSATSVEKSTLKGV 919 KT YYLRSRSA K T+ Sbjct: 752 KTGMYYLRSRSAADAIKFTVDTA 774 >gi|313117006|ref|YP_004038130.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogeometricum borinquense DSM 11551] gi|312294958|gb|ADQ68994.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogeometricum borinquense DSM 11551] Length = 845 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 388/846 (45%), Positives = 534/846 (63%), Gaps = 47/846 (5%) Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIV----LSETYKNMYDGLSESDLETALIFSSRT 208 + + + + I+ +A +G +DV + V ++ET +N+YDG S ++ AL + Sbjct: 3 STQTTQTNDVRTILNQARTGYEDVLTDEVMDRLVTETERNLYDGASIDEVYEALEGVTTA 62 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 IE++P Y V A + R V ++ + + Y E F +E GV L Sbjct: 63 RIERDPAYKYVAADIHRRRYFRRVTG---EQLSETADDDTATTYRETFAANLERGVDEDL 119 Query: 269 LHESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRV 324 L E ++D FD+ LA+ L ERD F+Y+ + L RYF+ G +E+PQAF+MRV Sbjct: 120 LDERLLDGRFDIDELADALVLERDDKFDYIAMSTLTQRYFIKTEVDGDPLELPQAFWMRV 179 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLA++E + + RA+EFY++LS F STPTLF+SGT HPQLSSC+LTTV DDL IF Sbjct: 180 AMGLAIEEDDPQARALEFYDVLSRLLFTPSTPTLFHSGTTHPQLSSCYLTTVEDDLEHIF 239 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + + +A L+K+SGGLGNDWT +R GA I T +S G +PFLK++ND A+N+ GKR Sbjct: 240 DSYKHHAQLSKWSGGLGNDWTNLRAEGALIESTGVESTGTVPFLKISNDVTAAINRSGKR 299 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA C YLE WH+D FLDLR+NTGD+RRRTHDMNTA W+PDLFM+RV + WTLFSP Sbjct: 300 RGAACGYLEAWHMDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMERVENDETWTLFSP 359 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DEV +LH+ YG+EF Y YE +A+ GE++ + + A LWR MLT LFETGHPWITFK Sbjct: 360 DEVPELHETYGEEFAELYREYEEKAEAGELRQYETVDAADLWRTMLTRLFETGHPWITFK 419 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 DPCN+RSPQ HVG VHSSNLCTEITLN+S+EE AVCNLGS+NL H A+++ D + LA T Sbjct: 420 DPCNVRSPQDHVGTVHSSNLCTEITLNTSAEEHAVCNLGSVNLSNHVADSELDREALADT 479 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I TA R+LDNV+D+ + ++A+ SN HR +GLG+MGF AL + AS EAVE A+ Sbjct: 480 IETATRMLDNVVDLCFYPTDEAEYSNMRHRPVGLGVMGFHDALMQVGTSMASEEAVEAAN 539 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSR 743 EF+S+H I S LA+ERGAY +F+GS WD+G+ P D++ L R E+ +R+ Sbjct: 540 RWQEFVSYHTILNSSRLAKERGAYETFEGSKWDRGILPHDTVDRLEAERGREIPTDRSET 599 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 + WD ++ + GMRNSN MAIAPTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N Sbjct: 600 MDWDRVRDHIAEHGMRNSNTMAIAPTATISTINGTTPSIEPIYSNLYVKSNMSGDFTVIN 659 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 LV++LK LWD+ M+ +K+ DGSI + IP+++++++ +AFEIDP + + R Sbjct: 660 EQLVDDLKAEGLWDDEMVDQIKFFDGSIQEVSAIPEEMRELYRSAFEIDPRHQLRLTAHR 719 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK------ 917 +WIDQ+ S N++ G LD +Y+ AW +G+KTTYYLR+ A+ +EKSTL Sbjct: 720 GQWIDQSISHNVFFPSTDGSLLDDVYKTAWRLGVKTTYYLRTLGASQIEKSTLDMAEYGR 779 Query: 918 -----------------------------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 G+ + + + + + D Sbjct: 780 TQRRNESEATADRDSNDNGGNVTAADGDTDDSGEGDRDAAAGGDKTGEACDTSLARVEDP 839 Query: 949 ECEVCQ 954 C+ CQ Sbjct: 840 TCDACQ 845 >gi|190572322|ref|YP_001970167.1| putative ribonucleoside-diphosphate reductase large subunit [Stenotrophomonas maltophilia K279a] gi|190010244|emb|CAQ43852.1| putative ribonucleoside-diphosphate reductase large subunit [Stenotrophomonas maltophilia K279a] Length = 775 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 322/819 (39%), Positives = 461/819 (56%), Gaps = 53/819 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + +GT + ++ V+ + GL V V + T +Y+G + +L+ I Sbjct: 1 MSVTKRNGTTELVDLNKIVRAVQRSSEGLHAVDPMRVATRTISGLYNGATTRELDELSIR 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y ++ AR L + +EV F + + G Sbjct: 61 TAALLIGEEPEYGRLAARLLANYIAKEVSGQEI----------------YAFSQSVSRGH 104 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQA 319 + L+++ +++F + L + + D F+Y GL+ LYDRY L IE PQ Sbjct: 105 EVGLINDRLLNFVQTNARKLNDAIDISLDLNFDYFGLRTLYDRYLLRHPHTRKVIETPQQ 164 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPD 378 FF+R+A L+ E + Y + + ++ S+PTLFNSGT H QLSSCFL D Sbjct: 165 FFLRIASALS----EDVSETLALYKRMGNLDYLPSSPTLFNSGTTHEQLSSCFLLDSPQD 220 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I+ + A L+K+SGG+G +T VR G+ I TNG S G++P+LK + + AV Sbjct: 221 SLESIYSKYGDIAQLSKFSGGIGVSYTRVRSRGSLIKSTNGHSNGIVPWLKTMDSSVAAV 280 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RR H++N ANW+PDLFMKRV + Sbjct: 281 NQGGKRKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQE 340 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LF P V + DL+G+ FE AY E Q K R ISA L+ +M+ L ETG+ Sbjct: 341 WSLFDPRVVPEFTDLFGEAFEAAYLQAEAQ-----GKANRTISARKLYARMMRTLAETGN 395 Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615 W+TFKD CN S Q + V+H SNLCTEI +S++ETAVCNLGSINL HF + Sbjct: 396 GWMTFKDKCNRASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE 455 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD++KLA T+R AVR LD VID+N + IE A+++N R +GLG MG Q +P+ Sbjct: 456 FDFEKLAETVRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFD 515 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA ++ + E I FHA+ S ELAQERG + SF + G D+ ++ E Sbjct: 516 SAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPEDTAR 575 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WD L+ R+K G+RNS +AIAPTATIA+I G + ++P NL+ + + Sbjct: 576 ----------WDALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETL 625 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SGDF VN +LVNELK+ LW M +K +GSI + +IP+ L++++ TA+E+ Sbjct: 626 SGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRS 685 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LI+ A+ R +IDQ+ SLNL+++ P+ + +Y AW G+KTTYYLRSR AT + K+T Sbjct: 686 LIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKTTYYLRSRPATKIAKTT 745 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + I S + CE CQ Sbjct: 746 VS---------AAAPAKVFSPDEAIACSLENPEACEACQ 775 >gi|330805291|ref|XP_003290618.1| ribonucleotide reductase large subunit [Dictyostelium purpureum] gi|325079257|gb|EGC32866.1| ribonucleotide reductase large subunit [Dictyostelium purpureum] Length = 855 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 263/823 (31%), Positives = 419/823 (50%), Gaps = 44/823 (5%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYKNMYDGLSES 196 K+ ++ DG + ++ + C + V V + ++ G+ + Sbjct: 13 DSKMYVIKRDGQKQNVTFDKITSRIRFLCEMEPRLNEEIVDPAEVAQKVISGVFPGVKTT 72 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L+ ++ + + P+Y + AR + L ++ T++ + + Y Sbjct: 73 ELDNLAAETAAYMSTRHPDYGVLAARISVSNLHKQTSTSLVETV--------KIQYEYIN 124 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 + +++ L + Y+RDF +++ G + L Y IN S +E Sbjct: 125 SKTNLPAPLVSKELYDIVNEHAERLEKAIDYQRDFDYDFFGFKTLERSYLHRINNSIVER 184 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ MRV++G+ + + A+ Y LS F +TPTLFN+GT +PQ+SSCFL + Sbjct: 185 PQHMLMRVSIGIHGNDIDN---AILTYEKLSQKLFTHATPTLFNAGTPYPQMSSCFLVQM 241 Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D + GI+ L++ A+++K +GG+G +R ++I GTNG S G++P L+V NDTA Sbjct: 242 KEDSIDGIYDTLKQCALISKSAGGIGIACHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTA 301 Query: 436 VAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+QGG KRKGA YLE WH D+ EF++L+KN G + R D+ A W+ DLFM+RV Sbjct: 302 RYVDQGGGKRKGAFAVYLEPWHSDIFEFIELKKNHGKEEMRARDLFYALWVSDLFMERVE 361 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 QN W+LF P+E L + + +E Y YE R I A LW ++ Sbjct: 362 QNGDWSLFCPNEAPRLDETHSEEHRELYLKYE----NTPGLARRVIKAQELWFAIMESQV 417 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 ETG P+I +KD CN +S Q+++G + SSNLCTEI +S +E AVCNL SI L Sbjct: 418 ETGTPFILYKDSCNSKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFIRRK 477 Query: 611 -----FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 +FD+ KL + + L+ +ID N + +++AK SN HR IG+G+ G Sbjct: 478 EGSTNPKEKEFDHQKLYEITKIVTKNLNKIIDRNYYPVQEAKTSNLRHRPIGIGIQGLAD 537 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L +P+ A ++ E E I F A++AS EL+ G Y +FKGS QG+ D Sbjct: 538 VFIQLRMPFDGTAAAKLNIEIAETIYFAALTASHELSLIEGPYETFKGSPASQGILQYDF 597 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R W +LK ++ G+RNS +A PTA+ + I G ++ +P Sbjct: 598 WNVTPTNR----------WNWTDLKDKIVNKGGLRNSLLIAPMPTASTSQILGNNECFEP 647 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 N+Y + ++G+FT+VN L+ +L + +W + + + + GSI +I IPDDLK++ Sbjct: 648 YTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPELKNQIVLNRGSIQSIPSIPDDLKEL 707 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903 + T +EI LI+ A+ R +IDQ+QS N+++ EP+ KL ++ +W GLKT YYL Sbjct: 708 YKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYL 767 Query: 904 RSRSATSVEKSTLKGV-DGKLNAVPVTDPNSSTHSLGIPSSCT 945 R+R A + T+ V T + PSS Sbjct: 768 RTRPAADAIQFTVDPTVQQTPKPVEKDQTPLKTPTNKTPSSLN 810 >gi|237841871|ref|XP_002370233.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii ME49] gi|211967897|gb|EEB03093.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii ME49] gi|221482702|gb|EEE21040.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii GT1] gi|221503104|gb|EEE28810.1| ribonucleoside-diphosphate reductase, large subunit, putative [Toxoplasma gondii VEG] Length = 877 Score = 668 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 288/842 (34%), Positives = 439/842 (52%), Gaps = 59/842 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + ++ +E+ GL V V MY G+ S+L+ Sbjct: 60 MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 119 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +S + P+++++ AR ++ L + + Y + E Sbjct: 120 QTSAYMAASHPDFSRLAARIAIDNLHKNTTDNFLTVIDQL---------HGYVDKLGREA 170 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + + L L Y RDF ++Y G + L Y L I+ +E PQ MR Sbjct: 171 KLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMR 230 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 VA G+ + ++A+E Y L+S F +TPTLFN+GT PQ+SSCFL T+ D + G Sbjct: 231 VACGIHCGD---VEKAIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDG 287 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF L++ A+++K +GGLG T +R ++I GTNG S G++P L+V ND A V+QGG Sbjct: 288 IFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGG 347 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG++ YLE WH DV +FLD++KN G + RR D+ A WIPDLFM+RV NAGWTL Sbjct: 348 GKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTL 407 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L +++G EF+ YE YER E + + I A LW +L ETG P++ Sbjct: 408 MCPNECPGLTEVWGDEFKELYERYER-----EGRGRKTIPAQHLWFAILQAQIETGTPYM 462 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619 +KD CN +S Q+++G + SNLCTE+ +S +E AVCNL S++L + FDY+ Sbjct: 463 LYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTFDYE 522 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L ++ R L+ VID N + + +AKKSN HR +GLG+ G A LL P+ SPEA Sbjct: 523 HLKRIVKVMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEA 582 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + E I F A+ AS ELA E G Y++++GS QG+ D G+ Sbjct: 583 RVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTP--------- 633 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + WD L++++K G+RNS ++ PTA+ + I G +++ +P N+Y + +SG+F Sbjct: 634 SSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEF 693 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L +RDLW E + L H+GS+ N++ IPDDLK ++ T +EI +++ Sbjct: 694 FVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDL 753 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A R +IDQ+ SLN+++ P+ KL ++ W GLKT YYLR+++A K T+ Sbjct: 754 AIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDS 813 Query: 919 --------------------VDGKLNAVPVTDPNSSTHSLGIPSSC-------TSDTECE 951 + D + + C + D CE Sbjct: 814 QLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCRWRRTGASPDEPCE 873 Query: 952 VC 953 +C Sbjct: 874 MC 875 >gi|162452148|ref|YP_001614515.1| ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce 56'] gi|161162730|emb|CAN94035.1| Ribonucleoside-diphosphate reductase [Sorangium cellulosum 'So ce 56'] Length = 838 Score = 668 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 322/840 (38%), Positives = 473/840 (56%), Gaps = 56/840 (6%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + P +++ +G+ + ++ V +C+ L DV + V ++T +YDG + Sbjct: 34 AEETPPHTTMRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDALRVATKTISGLYDGATT 93 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +L+ I ++ +LI EP YAK+ AR L + +EV Sbjct: 94 RELDQLSIQTAASLIADEPQYAKLAARLLATYIDKEVRNQEI----------------HA 137 Query: 256 FCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 F + + G + L+++ + F + L + ++ RD EY GL+ LYDRY L + Sbjct: 138 FSQSVAVGRRLGLINDRLHGFVAQNARKLNDAIEPARDHELEYFGLRTLYDRYLLKHPET 197 Query: 313 R--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 R IE PQ FF+R+A L+ + AVE Y L SS ++ S+PT+FNSGT H QLSS Sbjct: 198 RLVIETPQQFFLRIACALSETAAQ----AVELYRLFSSLDYLPSSPTMFNSGTSHEQLSS 253 Query: 371 CFLTTVPD-DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL PD L I+ + AML+K+SGG+G + VR G+ I TNG S G++P+LK Sbjct: 254 CFLLDSPDDHLETIYQRYTDVAMLSKFSGGIGLAYHRVRSRGSLIRATNGHSSGIVPWLK 313 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + AVNQGGKRKGA C YLE WH DVEEFL LR NTGD+ RTH++N A+W+PDLF Sbjct: 314 TLDASVAAVNQGGKRKGACCVYLEPWHADVEEFLSLRDNTGDEAARTHNLNLASWVPDLF 373 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 MKRV + W+LF P + DL DLYG+EFE Y ER + + A L+ +M Sbjct: 374 MKRVEADGDWSLFDPKDARDLPDLYGEEFERRYVEAERAGLA-----KKTMKARELYARM 428 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 + L +TG+ W+TFKD N Q +VH SNLCTEI +S+EE+AVCNLGSINL Sbjct: 429 MRTLAQTGNGWMTFKDKSNRACNQTALPGRIVHLSNLCTEILEVTSNEESAVCNLGSINL 488 Query: 608 LAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 H A FD++KLA T+RTAVR LD VID+N + I ++SN R +GLGLMG Sbjct: 489 ARHTATLADGAVAFDFEKLARTVRTAVRQLDRVIDLNYYPIPSTRRSNLRWRPVGLGLMG 548 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 Q + +P+ +P A E++ E + +HA+S S +LA E+G + +F + +G Sbjct: 549 LQDVFFQMRLPFDAPAARELSRRISEEVYYHALSTSADLAAEKGRHPAFDETRAARGELQ 608 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D+ G + E W+ L+ RV+ G+RNS +AIAPTATIA+I G + I Sbjct: 609 FDAWGAVPEDAAR----------WEALRARVQAEGLRNSLLVAIAPTATIASIAGCYECI 658 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P NL+ + +SGDF +N +LV ELK+ W++A+ + LK +GS+ ++ +P+ ++ Sbjct: 659 EPQVSNLFKRETLSGDFLQMNRYLVAELKRLGAWNDAVRARLKLAEGSVQGMDELPEQIR 718 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 + TA+EI LI+ A+ R +IDQ+QSLNL+++ P+ +L +Y AW GLKTTYY Sbjct: 719 AVFRTAWEIPMRSLIDMAADRGAFIDQSQSLNLFIENPTIGQLSSMYFHAWKKGLKTTYY 778 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNS--------STHSLGIPSSCTSDTECEVCQ 954 LRSR AT + K+T++ + + + + + + CE CQ Sbjct: 779 LRSRPATRIAKATVEAPPDRTPGDDAAPRREGGWVPAPPAKAAADVACALENPEACEACQ 838 Score = 39.8 bits (91), Expect = 2.2, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 15 FPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 S ++V KRNG D +KI RA+ ++ A+ A Sbjct: 29 MTSAGAEETPPHTTMRVKKRNGSSEPVDVNKIVRAVSRSCAALSDVDA 76 >gi|114635719|ref|XP_001159937.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain isoform 3 [Pan troglodytes] Length = 752 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 284/776 (36%), Positives = 439/776 (56%), Gaps = 31/776 (3%) Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 + + +Y G++ +L+T ++ TL K P+YA + AR + L +E +K Sbjct: 1 MKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET--------KK 52 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 M+ LY + ++ + L + + Y+RDF++ Y G + L Sbjct: 53 VFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLE 112 Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 Y L ING E PQ MRV++G+ E A+E YNLLS F ++PTLFN+G Sbjct: 113 RSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAG 169 Query: 363 TRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG S Sbjct: 170 TNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNS 229 Query: 422 QGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ Sbjct: 230 NGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 289 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + + Sbjct: 290 FALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVV 344 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVC Sbjct: 345 KAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVC 404 Query: 601 NLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G Sbjct: 405 NLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIG 464 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G Sbjct: 465 VQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKG 524 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + D + T W LK+++ G+RNS +A PTA+ A I G + Sbjct: 525 ILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNN 574 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 +SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPD Sbjct: 575 ESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPD 634 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 DLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT Sbjct: 635 DLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKT 694 Query: 900 -TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLR+R A + + TL V + ++ + S + EC +C Sbjct: 695 GMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 750 >gi|95007128|emb|CAJ20349.1| ribonucleoside-diphosphate reductase, large chain [Toxoplasma gondii RH] Length = 855 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 288/842 (34%), Positives = 439/842 (52%), Gaps = 59/842 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + ++ +E+ GL V V MY G+ S+L+ Sbjct: 38 MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 97 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +S + P+++++ AR ++ L + + Y + E Sbjct: 98 QTSAYMAASHPDFSRLAARIAIDNLHKNTTDNFLTVIDQL---------HGYVDKLGREA 148 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + + L L Y RDF ++Y G + L Y L I+ +E PQ MR Sbjct: 149 KLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFKTLERSYLLKIHDRIVERPQHMLMR 208 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 VA G+ + ++A+E Y L+S F +TPTLFN+GT PQ+SSCFL T+ D + G Sbjct: 209 VACGIHCGD---VEKAIETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDG 265 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF L++ A+++K +GGLG T +R ++I GTNG S G++P L+V ND A V+QGG Sbjct: 266 IFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGG 325 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG++ YLE WH DV +FLD++KN G + RR D+ A WIPDLFM+RV NAGWTL Sbjct: 326 GKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTL 385 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L +++G EF+ YE YER E + + I A LW +L ETG P++ Sbjct: 386 MCPNECPGLTEVWGDEFKELYERYER-----EGRGRKTIPAQHLWFAILQAQIETGTPYM 440 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619 +KD CN +S Q+++G + SNLCTE+ +S +E AVCNL S++L + FDY+ Sbjct: 441 LYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTFDYE 500 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L ++ R L+ VID N + + +AKKSN HR +GLG+ G A LL P+ SPEA Sbjct: 501 HLKRIVKVMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEA 560 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + E I F A+ AS ELA E G Y++++GS QG+ D G+ Sbjct: 561 RVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTP--------- 611 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + WD L++++K G+RNS ++ PTA+ + I G +++ +P N+Y + +SG+F Sbjct: 612 SSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEF 671 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L +RDLW E + L H+GS+ N++ IPDDLK ++ T +EI +++ Sbjct: 672 FVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDL 731 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A R +IDQ+ SLN+++ P+ KL ++ W GLKT YYLR+++A K T+ Sbjct: 732 AIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDS 791 Query: 919 --------------------VDGKLNAVPVTDPNSSTHSLGIPSSC-------TSDTECE 951 + D + + C + D CE Sbjct: 792 QLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCRWRRTGASPDEPCE 851 Query: 952 VC 953 +C Sbjct: 852 MC 853 >gi|328722843|ref|XP_003247688.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 802 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 271/820 (33%), Positives = 436/820 (53%), Gaps = 32/820 (3%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESD 197 + KL + DG + ++ M +E+ C GL + + ++ G+S Sbjct: 7 KSSDKLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQ 66 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ ++ L K P++A + AR + L +E + LY Sbjct: 67 IDNLAAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDV--------IYDLYNMSNE 118 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 R H ++ L N +K++RD+ + Y G + L Y L ING +E P Sbjct: 119 RNQRRMKIISDFHYGVVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVVERP 178 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q MRV++G+ E A+E Y+L+SS +F ++PT+FN+ T PQLSSCFL Sbjct: 179 QHLLMRVSIGIHG---EDIDAAIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLVANK 235 Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL-GAHIHGTNGKSQGVIPFLKVANDTA 435 D L ++ A +++ SGG+G + +S G++ LKV ND A Sbjct: 236 SDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLNDLA 295 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGGKR GAV Y+E WH DV + +LRKNTG+ +T D+ A WIPD FM+RV Sbjct: 296 QYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEA 355 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N W+L P + L D++G +F Y+ YE E + R++SA LW +++T E Sbjct: 356 NQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITSQIE 410 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 TG P++ +KD CN +S Q+++G + SNLCTEI +SSEE AVCNL SI + N Sbjct: 411 TGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKPNG 470 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 ++D++KL + + L+ VID+N + + +A+ SN HR +G+G+ G L+ P+ Sbjct: 471 EYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPF 530 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPE+ ++ + E + + A+ AS ELA++ G YSS++GS QG+ D Sbjct: 531 GSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWN------- 583 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + T WD LK+++ G+RNS +A PTA+ A I G ++SI+P NLY + Sbjct: 584 ---VKPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRT 640 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F+VVN L+N+L + +LW+E M ++L Y+ GS+ I+ IPD++K+++ T +E+ Sbjct: 641 LSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQK 700 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +++ A+ R +IDQ+QSLN+++++P+ K+ ++ W GLKT YYLR+R A + Sbjct: 701 IILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQ 760 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ N T+ N + + S + C +C Sbjct: 761 FTVNKSTLSSNIAIQTEKNDALSMQELVCSLENKDACTMC 800 >gi|193669060|ref|XP_001942710.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 1 [Acyrthosiphon pisum] gi|328715730|ref|XP_003245707.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 2 [Acyrthosiphon pisum] Length = 802 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 270/820 (32%), Positives = 436/820 (53%), Gaps = 32/820 (3%) Query: 140 PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESD 197 + KL + DG + ++ M +E+ C GL + + ++ G+S Sbjct: 7 KSSDKLFVKKRDGRMEEVMMDKITMRIEQLCEGLNMDFIDPPEITLFVIGDICPGISTVQ 66 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ ++ L K P++A + AR + L +E + LY Sbjct: 67 IDNLAAETAAYLTTKHPDFAVLAARIAISNLYKETKNNFSDV--------IYDLYNMSNE 118 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 R H ++ L N +K++RD+ + Y G + L Y L ING +E P Sbjct: 119 RNQRRMKIISDFHYGVVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKINGKVVERP 178 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 Q MRV++G+ E A+E Y+L+SS +F ++PT+FN+ T PQLSSCFL Sbjct: 179 QHLLMRVSIGIHG---EDIDAAIETYDLMSSKYFTHASPTMFNAATPRPQLSSCFLVANK 235 Query: 378 -DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL-GAHIHGTNGKSQGVIPFLKVANDTA 435 D L ++ A +++ SGG+G + +S G++ LKV ND A Sbjct: 236 SDSLEDFGKTVKTCAKISQSSGGIGIHLHNISAAGTTWTKYPRHESHGLVEPLKVLNDLA 295 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGGKR GAV Y+E WH DV + +LRKNTG+ +T D+ A WIPD FM+RV Sbjct: 296 QYVDQGGKRPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEA 355 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W+L P + L D++G +F Y+ YE E + R++SA LW +++T E Sbjct: 356 DQSWSLMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKRYNRQVSARELWFRIITSQIE 410 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 TG P++ +KD CN +S Q+++G + SNLCTEI +SSEE AVCNL SI + N Sbjct: 411 TGMPYVLYKDACNSKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKPNG 470 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 ++D++KL + + L+ VID+N + + +A+ SN HR +G+G+ G L+ P+ Sbjct: 471 EYDFEKLLKITKIVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPF 530 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPE+ ++ + E + + A+ AS ELA++ G YSS++GS QG+ D Sbjct: 531 GSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWN------- 583 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + T WD LK+++ G+RNS +A PTA+ A I G ++SI+P NLY + Sbjct: 584 ---VKPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRT 640 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F+VVN L+N+L + +LW+E M ++L Y+ GS+ I+ IPD++K+++ T +E+ Sbjct: 641 LSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQK 700 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +++ A+ R +IDQ+QSLN+++++P+ K+ ++ W GLKT YYLR+R A + Sbjct: 701 IILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQ 760 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ N T+ N + + S + C +C Sbjct: 761 FTVNKSTLSSNIAIQTEKNDALSMQELVCSLENKDACTMC 800 >gi|15617495|ref|NP_258291.1| RR1 [Spodoptera litura NPV] gi|15553231|gb|AAL01709.1|AF325155_21 ribonucleotide reductase [Spodoptera litura NPV] Length = 770 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 260/782 (33%), Positives = 422/782 (53%), Gaps = 31/782 (3%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG + +++ +E+ C GL V+ V + +Y G++ ++L+ + Sbjct: 5 HVIKRDGRKEAVFMYKIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIA 64 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ + +Y+ + AR + L +E + + Y + + Sbjct: 65 ETAAAMTIDHSDYSLLAARLAVSNLHKETKDSFFDVIIDM--------YEAIDPKTGVKT 116 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 H +++ + L + + ++RDF ++Y G + + Y ING +E PQ MR Sbjct: 117 PMISNFHYNIIAANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMR 176 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382 VA+G+ E A++ YNL+S+ +F ++PTLF++ T Q+SSCFL T D + G Sbjct: 177 VAIGIHG---EDIDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEG 233 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L++ AM++K GG+G VR G+ + G G S G++P L+V N+TA V+QG Sbjct: 234 IYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGG 293 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV ++ W+L Sbjct: 294 NKRPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSL 353 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + L D YG EF+ Y+ YE E + R++ A +WR ++ ETG P++ Sbjct: 354 MCPMQSPGLADCYGAEFDALYQKYEE-----EGRYVRRVHAQTMWRAIIESQVETGTPYM 408 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDK 620 +KD CN +S Q ++G + SNLCTEI +S +E AVCNL SI + + +D++K Sbjct: 409 LYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVVQSGVYDFEK 468 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ ID N + + +AK SN +R IG+G+ G A ++ +PY S A Sbjct: 469 LKKITKIVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAA 528 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E+ + E I + A+ AS ELA G Y +++GS +GV D + Sbjct: 529 ELNKKIFETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWD---------NVTP 579 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F Sbjct: 580 SDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQ 639 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN LV +L LW++ + + + +++GS+ IE IP ++++++ T +E+ LI A Sbjct: 640 VVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMA 699 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS N+Y+D PS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 700 ADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 759 Query: 920 DG 921 Sbjct: 760 AA 761 >gi|294471329|gb|ADE80913.1| RR1 [Spodoptera litura NPV] Length = 770 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 260/782 (33%), Positives = 422/782 (53%), Gaps = 31/782 (3%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG + +++ +E+ C GL V+ V + +Y G++ ++L+ + Sbjct: 5 HVIKRDGRKEAVFMYKIKCRIEKLCYGLDMNFVNPTSVAVRVDQGIYSGVTTAELDNLIA 64 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ + +Y+ + AR + L +E + + Y + + Sbjct: 65 ETAAAMTIDHSDYSLLAARLAVSNLHKETKDSFFDVIIDM--------YEAIDPKTGVKT 116 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 H +++ + L + + ++RDF ++Y G + + Y ING +E PQ MR Sbjct: 117 PMISNFHYNIIAANAYRLNSAIVHDRDFNYDYFGFKTMQRSYLFKINGVTVERPQYMMMR 176 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382 VA+G+ E A++ YNL+S+ +F ++PTLF++ T Q+SSCFL T D + G Sbjct: 177 VAIGIHG---EDIDAAIDTYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVATKEDSIEG 233 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L++ AM++K GG+G VR G+ + G G S G++P L+V N+TA V+QG Sbjct: 234 IYDTLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVGGASNGLVPMLRVYNNTARYVDQGG 293 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV ++ W+L Sbjct: 294 NKRPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSL 353 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P + L D YG EF+ Y+ YE E + R++ A +WR ++ ETG P++ Sbjct: 354 MCPMQSPGLADCYGAEFDALYQKYEE-----EGRYVRRVHAQTMWRAIIESQVETGTPYM 408 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF-ANNQFDYDK 620 +KD CN +S Q ++G + SNLCTEI +S +E AVCNL SI + + +D++K Sbjct: 409 LYKDSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVLQSGVYDFEK 468 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ ID N + + +AK SN +R IG+G+ G A ++ +PY S A Sbjct: 469 LKKITKIVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAA 528 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E+ + E I + A+ AS ELA G Y +++GS +GV D + Sbjct: 529 ELNKKIFETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWD---------NVTP 579 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F Sbjct: 580 SDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQ 639 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN LV +L LW++ + + + +++GS+ IE IP ++++++ T +E+ LI A Sbjct: 640 VVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMA 699 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS N+Y+D PS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 700 ADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 759 Query: 920 DG 921 Sbjct: 760 AA 761 >gi|193608391|ref|XP_001944671.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 802 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 259/815 (31%), Positives = 432/815 (53%), Gaps = 32/815 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 L + DG L ++ + +E+ C GL + + ++ G++ ++ Sbjct: 12 LFVKKRDGRLEEVLMDKITLRIEQLCDGLNMDFIDPPEITLYVIGDLCPGITTVQIDNLA 71 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L K P++A + AR + L +E + LY R Sbjct: 72 AETAAYLTTKHPDFAVLAARIAISNLYKETKENFSDV--------IYDLYNMSNERNQSR 123 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 H ++ L N +K++RD+ + Y G + L Y L I+G +E PQ M Sbjct: 124 MPIISDFHYGIVMKHADRLNNAIKHDRDYTYSYFGFKTLEKSYLLKIDGKVVERPQHLLM 183 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RV++G+ E A+E Y+L+S +F ++PT+FN+ T PQLSSCFL D+L Sbjct: 184 RVSIGIHG---EDIDAAIETYDLMSLKYFTHASPTMFNASTPRPQLSSCFLVANKSDELE 240 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAH-IHGTNGKSQGVIPFLKVANDTAVAVNQ 440 ++ A +++ +GG+G V G +S G++ LKV ND A ++Q Sbjct: 241 DFGKTVKTCAKISQSAGGIGVHLHNVGAAGTKWTKYPKCESHGLVEPLKVLNDLAQYIDQ 300 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG+R GAV Y+E WH D+ + +LRKNTG+ +T D+ A WIPD FM+RV N W+ Sbjct: 301 GGRRPGAVAVYIEPWHADIYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQSWS 360 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P + L D++G +F Y+ YE E +++ A LW +++T ETG P+ Sbjct: 361 LMCPRKCPGLSDVWGDDFVKLYKKYE-----DEKLYNKQVPARELWFRIITSQIETGMPY 415 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYD 619 + +KD CN +S Q+++G + SNLCTE+ +S EE AVCNL SI + N ++D++ Sbjct: 416 MLYKDACNAKSNQKNLGTIKCSNLCTEVIQYTSEEEVAVCNLASIAVNMFVKPNGEYDFE 475 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + R L+ VID+N + + +A+ SN HR IG+G+ G L+ P+ SPE+ Sbjct: 476 KLLKITKIVTRNLNKVIDVNFYPVIEAETSNKRHRPIGIGIQGLADLFSLMRFPFGSPES 535 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ + E + + A+ AS ELA++ G YSS++GS QG+ + + Sbjct: 536 RKLNIQIFETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYEMWN----------VK 585 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +S W+ LK+++ G+RNS +A PTA+ A I G ++SI+P NLY + +SG+F Sbjct: 586 PSSLWNWEILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSGEF 645 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +V+N L+N+L + +LW+E M + L + GS+ I+ IPD++K+++ T +E+ +++ Sbjct: 646 SVINRHLLNDLIKLNLWNEDMRNKLIFFKGSVQKIKSIPDNIKELYKTNWELSQKIILDM 705 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R +IDQ+QSLN+++++P+ K+ ++ W GLKT YYLR+R A + T+ Sbjct: 706 AADRGAYIDQSQSLNIHIEQPTISKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTVDK 765 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 N T+ N + + + S + C +C Sbjct: 766 STVSNNVAIQTEKNDALNMEQLVCSLENKDACTMC 800 >gi|294471323|gb|ADE80908.1| RR1 [Spodoptera litura NPV] Length = 778 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 261/778 (33%), Positives = 426/778 (54%), Gaps = 32/778 (4%) Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + ++ Sbjct: 4 KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 ++ +Y+ + AR + L +E + + + +Y + Sbjct: 64 ASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ MRVA+ Sbjct: 116 PDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385 G+ ++ A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + D + GI+ Sbjct: 176 GIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQG KR Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W+L P Sbjct: 293 PGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + L D +G EFE YE YE+Q + +++SA LWR ++ ETG P++ +K Sbjct: 353 MQSPGLADCHGVEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYMLYK 407 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622 D CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D+++L Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + R L+ +ID N + +A++SN +R IG+G+ G A + +PY S A E+ Sbjct: 468 EITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAEL 527 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I + A+ AS ELA + G Y ++KGS +G D ++ Sbjct: 528 NKKIFETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWN---------GATPSN 578 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VV Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I A+ Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWNMGLKTGMYYLRTKPAVNAIQFTVDKN 756 >gi|108757444|ref|YP_633212.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus xanthus DK 1622] gi|108461324|gb|ABF86509.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus xanthus DK 1622] Length = 785 Score = 665 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 318/819 (38%), Positives = 468/819 (57%), Gaps = 43/819 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G + + ++ V +C GL V + V ++T +YDG + +L++ I Sbjct: 1 MRVRKRNGGTETVDLNKIVRAVGRSCVGLPRVDAMRVATKTISGLYDGATTRELDSLSIQ 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y +++AR L +++EV F + + G Sbjct: 61 TAAALIVEEPEYGRLSARLLATFIQKEVSNQDI----------------HSFSQSVAAGH 104 Query: 265 KARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQA 319 K L+ + ++ F + L + R+ FEY GL+ +YDRY L +E PQ Sbjct: 105 KHGLIADRLLQFVQANARKLNAAIDPSRNDLFEYFGLRTVYDRYLLKNPQTREVLETPQE 164 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 FF+RVA L+ A+E Y L SS ++ S+PTLFNSGTRH QLSSCFL P D Sbjct: 165 FFLRVASALSGD---NVNEAIELYRLFSSLEYLPSSPTLFNSGTRHEQLSSCFLLDSPAD 221 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I+ + AML+K+SGG+G + VR G+ I TNG S G++P+LK + + AV Sbjct: 222 ELDAIYKKYSDIAMLSKFSGGIGVAYHRVRARGSLIKSTNGHSNGIVPWLKTLDASVAAV 281 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGGKRKGA C YLETWH D+E+FL+LR+NTGDD RRTH++N ANW+PDLFMKRV + Sbjct: 282 NQGGKRKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGD 341 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LF P V DLYG FE AY E RK+ A L+ +M+ L +TG+ Sbjct: 342 WSLFDPKSVPHFTDLYGDAFEQAYAKAEADGLA-----MRKVKARDLYARMMKSLAQTGN 396 Query: 559 PWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 W+TFKD N +S Q + V+H SNLCTEI +S ETAVCNLGS+NL + +F Sbjct: 397 GWMTFKDISNRKSNQTGKAGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRMLVDGKF 456 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+++L + + A+R LD VID+N + I A SN R +GLGLMG Q L + + S Sbjct: 457 DFERLRANAQLAMRQLDRVIDLNYYPIPTAASSNKRWRPVGLGLMGLQDVFFQLKLAFDS 516 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ + E I F A++ S ELA++ GA+ SF + +G D G++ E Sbjct: 517 AEARALSKKISEEIYFAALTTSCELAEQYGAHESFAETRAAKGELQFDHWGVVPEDTAR- 575 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD L++R+ G+RNS +AIAPTATIA+I G + I+P NL+ + +S Sbjct: 576 ---------WDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLS 626 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GDF VN +LV +L+ LW+E + + +K +GS+ +I +P++L+ ++ TA+E+ L Sbjct: 627 GDFLQVNRYLVRDLQALGLWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSL 686 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 ++ + R +IDQ+QSLNL+++ P+ KL +Y AW GLKTTYYLRSR AT + K+T+ Sbjct: 687 LDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKTTYYLRSRPATRIAKATV 746 Query: 917 -KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G + +T + + S + CE CQ Sbjct: 747 GAGGGASVAQAAPAPVAKATEAEAVACSLENPEACEACQ 785 >gi|291244082|ref|XP_002741928.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain-like, partial [Saccoglossus kowalevskii] Length = 759 Score = 665 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 290/783 (37%), Positives = 432/783 (55%), Gaps = 34/783 (4%) Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + +Y G++ +L+T ++ ++ K P+YA + AR + L +E T Sbjct: 1 AAITMRVITGVYPGVTTVELDTLAAETAASMTTKHPDYAVLAARIAVSNLHKETKKTFSA 60 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 M L+ R + ++ + L + + Y+RDF + + G Sbjct: 61 V--------MDDLFNYVNPRNNKPSPMISTKIHDIITNNAERLNSAIIYDRDFNYNFFGF 112 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 + L Y L ING E PQ MRV++G+ + E A+E YNLLS F ++PTL Sbjct: 113 KTLERSYLLKINGKVAERPQHMLMRVSVGIHHNDIE---GAIETYNLLSEKWFTHASPTL 169 Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 FN+GT PQLSSCFL T+ DD + GI+ L++ A+++K +GG+G + +R G++I GT Sbjct: 170 FNAGTCRPQLSSCFLLTMKDDSIEGIYDTLKQCALISKSAGGIGVNVHCIRASGSYIAGT 229 Query: 418 NGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 NG S G++P L+V N+TA V+QG KR GA YLE WH D+ +FLD +KNTG + +R Sbjct: 230 NGSSNGLLPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLDAKKNTGKEEQRA 289 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 D+ A WIPDLFMKRV N WTL P+E LHD++GKEFE YE YER E K Sbjct: 290 RDLFYALWIPDLFMKRVETNQDWTLMCPNECPGLHDVWGKEFEDLYEKYER-----ENKG 344 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 + I A LW ++ ETG P++ +KD CN +S Q++G + SNLCTEI SS +E Sbjct: 345 TKTIKAQLLWYAIIEAQTETGTPYMLYKDACNRKSNHQNLGTIKCSNLCTEIVEFSSPDE 404 Query: 597 TAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 AVCNL SI + ++ +D+ KL VR L+ +ID+N + +E+A+ SN HR Sbjct: 405 VAVCNLASIAVNMFVKPDKTYDFKKLEQVTGVIVRNLNKIIDVNFYPVEEARNSNMRHRP 464 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK--- 712 IG+G+ G A L+ P+ S EA+ + + E I + A+ AS ELA+ GAY S+K Sbjct: 465 IGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDGAYESYKFGD 524 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 G +G+ D + T WD LKK + T G+RNS +A PTA+ Sbjct: 525 GCPVSKGILQYDMWDVTP----------TDLHDWDALKKDIATHGLRNSLLLAPMPTAST 574 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 A I G ++S++P N+Y + +SG+F VVN L+ +L + LW++ M + L ++GSI Sbjct: 575 AQILGNNESVEPYTTNIYSRRVLSGEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSIQ 634 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQA 892 +I+ IPD +KK++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ A Sbjct: 635 SIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFFA 694 Query: 893 WLMGLKT-TYYLRSRSATSVEKSTLKGVDGKL-NAVPVTDPNSSTHSLGIPSSCTSDTEC 950 W GLKT YYLR+R A K T+ K V + + S + +C Sbjct: 695 WKQGLKTGMYYLRTRPAADPIKFTVNKTSLKPTTNVEAAAEKEEENQAAMVCSLQNKDDC 754 Query: 951 EVC 953 +C Sbjct: 755 LMC 757 >gi|73852902|ref|YP_294186.1| putative ribonucleoside-diphosphate reductase protein [Emiliania huxleyi virus 86] gi|72415618|emb|CAI65855.1| putative ribonucleoside-diphosphate reductase protein [Emiliania huxleyi virus 86] Length = 746 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 269/757 (35%), Positives = 407/757 (53%), Gaps = 28/757 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ +GT S ++ ++ GL V +V + + +YDG++ L+ + Sbjct: 1 MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ L P+Y+K+ AR + L + M LY + + Sbjct: 61 TATYLTMTHPDYSKLAARIAVSSLHKMTSNKFSSV--------MDSLYNYVNTKTGKWSP 112 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + + + + YE+D ++ G + + Y ING +E PQ MRV Sbjct: 113 LIADDIIECIRSNAEVFDDVINYEKDLEYDIFGYKTMEKSYLSRINGDIVERPQHMLMRV 172 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383 A+G+ + A+E Y LLS+ F +TPT++N+GTR+PQ+SSCFL + DD + GI Sbjct: 173 AIGIHCPD---VDAAIETYKLLSARVFTHATPTMYNAGTRNPQMSSCFLLKMKDDSIEGI 229 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 F L+ A+++K +GG+G VR ++I GT G S G++P L+V ++TA V+QGG Sbjct: 230 FDTLKNCALISKNAGGIGVSIHNVRAQNSYIRGTGGYSNGLVPMLRVFDNTARYVDQGGG 289 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGA YLE H D+ EFL+LRKNTG + R D+ A W+ D FMKRV W+LF Sbjct: 290 KRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLF 349 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E L D++G ++ YE YE E K + I A LW ++ ETG P++ Sbjct: 350 CPHECPGLSDVWGDDYVALYEKYE-----SEGKARKTIPAQKLWFAIMDSQIETGTPYML 404 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD CN +S QQH+G + SNLCTEI ++ +ETAVCNL SI L A + FD+ L Sbjct: 405 YKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVKDGTFDHQHLY 464 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 A LD VID N + I +A++SN HR IGLG+ G +L + + SP+A + Sbjct: 465 DVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSPDARVL 524 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 E E + F A++AS +LA+ +G YS+++GS QG F D + + Sbjct: 525 NKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSQGKFQFDLWNVTP----------SV 574 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 R WD L+ VK G RNS A PTA+ A I G ++ +P NLY + +SG+F VV Sbjct: 575 RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVV 634 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +L R LW ++M + + +GS+ NI P+DLK I+ T +EI LI+ A+ Sbjct: 635 NKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAAD 694 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 R +I Q+QS N+++ +P+ KL ++ W GLKT Sbjct: 695 RGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731 >gi|257053404|ref|YP_003131237.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus utahensis DSM 12940] gi|256692167|gb|ACV12504.1| ribonucleoside-diphosphate reductase, alpha subunit [Halorhabdus utahensis DSM 12940] Length = 815 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 400/816 (49%), Positives = 520/816 (63%), Gaps = 23/816 (2%) Query: 156 SFNSKRLEMIVEEACSGLQDV---SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212 + R+ I++ A G V + +N Y G +++ A++ + IE Sbjct: 6 PTQTDRIASILDRATDGEPTVTESDRTALRRAIDENCYAGADRAEVYEAILGTLSARIEA 65 Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 +P Y +V AR ++ EV+ + T E+ Y F IE GV LL Sbjct: 66 KPAYKRVAARVFRQRYYHEVIG------EDLTGTELDRAYRTIFRENIERGVATDLLDTR 119 Query: 273 MMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330 ++D FDL LA L ERD FEYL ++ LY RYFL +G +E+PQAF+MRVAMGLA+ Sbjct: 120 LVDRFDLDALAEYLAPERDEHFEYLAMETLYQRYFLRTNDGEHLELPQAFWMRVAMGLAV 179 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 +E + RA EFY++LS F STPTLF+SGT HPQLSSC+LTTVPDDL GIF A + + Sbjct: 180 EEDDPNARAKEFYDVLSKLEFTPSTPTLFHSGTTHPQLSSCYLTTVPDDLEGIFDAYKHH 239 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A L+K+SGGLGNDWTP+R GA I T +S GV+PFL+++ND A+N+ GKR+GA CA Sbjct: 240 AQLSKWSGGLGNDWTPLRAEGALIESTGVESTGVVPFLRISNDVTAAINRSGKRRGAACA 299 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL WH+D F+DL++ TGD+RRRT DMNTA WIPDLFM+RV WTLFSPDEV DL Sbjct: 300 YLAIWHLDFPAFVDLKRATGDERRRTPDMNTAAWIPDLFMERVQAGESWTLFSPDEVGDL 359 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 H+ G+ F Y YE+ A+ G+I+ F + A LWR +LT LFETGHPW+TFKDPCNI Sbjct: 360 HEATGEAFAEKYREYEQAAENGDIENFETVEAAELWRTLLTRLFETGHPWVTFKDPCNIG 419 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 SPQ H G + SSNLCTEITLN+S++E AVCNLGS+N H + + D D L T+ TA+R Sbjct: 420 SPQDHEGTIRSSNLCTEITLNTSTDEHAVCNLGSVNFATHMRDGELDRDYLEDTVETAMR 479 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNV+D+ + E+A+ SN HR +GLG MGF AL + +P S EAVE A+ EF+ Sbjct: 480 MLDNVVDLCFYPTEEAEDSNMRHRPVGLGTMGFHEALMEIGVPMNSNEAVEKANRWQEFV 539 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDEL 749 ++HAI S ELA ERGAY SF+GS WD+ + P D++ LL E R E+ RT L WD + Sbjct: 540 AYHAIRTSSELAGERGAYPSFEGSKWDRDILPQDTVDLLEEERGREIPTERTETLEWDAV 599 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +K + GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFT+VN LV + Sbjct: 600 RKSIAEHGMRNSNTMAIAPTATVSTINGTTASIEPQYSNLYVKSNMSGDFTIVNDHLVAD 659 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L++RDLWD+ M +KYHDGSI IE IP+DL++++ AFEIDP + + RQ WIDQ Sbjct: 660 LRERDLWDDEMRDRIKYHDGSIQEIEAIPEDLRELYRGAFEIDPRHQLRLTAHRQTWIDQ 719 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD--GKLNAVP 927 + S N++ G LD IY AW +GLKTTYYLR+ A+ VEKSTL + + Sbjct: 720 SVSHNVFFPSTDGTLLDDIYTTAWELGLKTTYYLRTLGASQVEKSTLDLSEYGKTQHRDA 779 Query: 928 VTDPNSSTHSLGIPS---------SCTSDTECEVCQ 954 DP T + D C+ CQ Sbjct: 780 SGDPEDGTTRSNETDRDQGGHSDLASVEDPTCDACQ 815 >gi|294471336|gb|ADE80919.1| RR1 [Spodoptera litura NPV] Length = 778 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 261/778 (33%), Positives = 425/778 (54%), Gaps = 32/778 (4%) Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + ++ Sbjct: 4 KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 ++ +Y+ + AR + L E + + + +Y + Sbjct: 64 ASMTIDHSDYSLLAARLAVSNLHNET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ MRVA+ Sbjct: 116 SDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385 G+ ++ A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + D + GI+ Sbjct: 176 GIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQG KR Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W+L P Sbjct: 293 PGAFAVYVEPWHADVSDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + L D +G EFE YE YE+Q + +++SA LWR ++ ETG P++ +K Sbjct: 353 MQSPGLADCHGVEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYMLYK 407 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622 D CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D+++L Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + R L+ +ID N + +A++SN +R IG+G+ G A + +PY S A E+ Sbjct: 468 EITKIVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAEL 527 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I + A+ AS ELA + G Y ++KGS +G D ++ Sbjct: 528 NKKIFETIYYGALEASCELAAKDGPYETYKGSRASRGELQYDMWN---------GATPSN 578 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VV Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I A+ Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNAIQFTVDKN 756 >gi|313768342|ref|YP_004062022.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1] gi|312599038|gb|ADQ91062.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1] Length = 749 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 281/780 (36%), Positives = 432/780 (55%), Gaps = 42/780 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 ++++ G + + ++ GL D S V + + +MYD ++ +++T Sbjct: 1 MRVIKRSGRIEDMKFDNVTNRIKNLTYGLSDKCDSSKVAQQVFSSMYDNITTQEIDTLSA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +I +P+Y + R + +++ + P F + + Sbjct: 61 EICVGMITSDPDYETLATRIVASNIQK--------------------VCPNNFHLAMRKL 100 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 KA ++ + +++ + +K +RDF F Y GL+ L Y ++G IE PQ FMR Sbjct: 101 QKAGIITDEVVE-VAQQVKEHIKSDRDFDFGYFGLKTLEKSYLQRVDGKLIETPQYMFMR 159 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 VA+G+ K+ A++ YN +S F+ +TPTLFN+GT PQ+SSCFL D + G Sbjct: 160 VAIGIHGKD---VPSALDTYNKMSQGLFIHATPTLFNAGTPRPQMSSCFLIANKADSIDG 216 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+G L E A ++K++GG+G +R + I GTNG+S G+IP L+V N TA VNQ G Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDIRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKG++ YLE WH D+ +FL+LR N GD+ R D+ +A WIPDLFMKRV + W+LF Sbjct: 277 RRKGSIAVYLEPWHSDIMDFLELRLNQGDEEARCRDLFSAMWIPDLFMKRVEEGGNWSLF 336 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 PD+ L D+YG+EFE Y YE + + A +W+ +L ETG P++ Sbjct: 337 CPDKAKGLSDVYGQEFEDLYTKYEEEGLANA-----TVPAADVWKAILKSQTETGTPYML 391 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620 +KD CN +S Q+++GV+ SSNLCTEI + +ET+VCNL SI L + FDYDK Sbjct: 392 YKDACNSKSNQKNLGVIKSSNLCTEILEYTDKDETSVCNLASIALPKYVNKETKTFDYDK 451 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L +T + L+ VID N + +E A++SN HR IGLG+ G L +P+ E+ Sbjct: 452 LHEITKTVTKNLNRVIDRNFYPVETARRSNMKHRPIGLGVQGLADVFILCGLPFDCEESR 511 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E + A+ AS ELA+ G+Y SFKGS +GV D Sbjct: 512 LMNAHIFETMYHAALEASSELAEVEGSYESFKGSPAAEGVLQPDMWDG--------ETKF 563 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R WD +++RVKT G+RNS MA PTA+ A I G ++ +P N+Y++ ++G+F Sbjct: 564 SGRYDWDAMRERVKTKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 623 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN LV++LK+ LW + M + GSI NI IPDD+K ++ T +EI +I+ A Sbjct: 624 VVNKHLVDDLKKVGLWSKEMKDLMVKAGGSIQNIVDIPDDIKNLYKTVWEISQKCIIDMA 683 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R ++IDQ+QS+NL+++ P+ KL ++ AW GLKT YYLRS++ + +L+ Sbjct: 684 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKAGLKTGMYYLRSKAKARPIQFSLEPD 743 >gi|283481642|emb|CAZ69758.1| putative ribonucleoside-diphosphate reductase protein [Emiliania huxleyi virus 99B1] Length = 746 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 265/757 (35%), Positives = 404/757 (53%), Gaps = 28/757 (3%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ +GT S ++ ++ GL V +V + + +YDG++ L+ + Sbjct: 1 MEVIKRNGTSESVQLDKIMKRLKNLSYGLDHVDPAVVSIKVVQGLYDGVTTVQLDNLAVE 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ L P+Y+K+ AR + L + M LY + + Sbjct: 61 TATYLTMTHPDYSKLAARIAVSSLHKMTSNKFSSV--------MDSLYNYVNTKTGQWSP 112 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + + + + YE+D ++ G + + Y ING +E PQ MRV Sbjct: 113 LIADDIIECIRSNADVFDDVINYEKDLEYDIFGYKTMEKSYLSRINGDIVERPQHMLMRV 172 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383 A+G+ + A+E Y LLS F +TPT++N+GT++PQ+SSCFL + DD + GI Sbjct: 173 AIGIHCPD---VDAAIETYKLLSQKKFTHATPTMYNAGTKNPQMSSCFLLKMKDDSIEGI 229 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 F ++ A+++K +GG+G VR ++I GT G S G++P L+V + TA V+QGG Sbjct: 230 FDTIKNCALISKNAGGIGVSIHNVRAQNSYISGTGGYSNGLVPMLRVFDSTARYVDQGGG 289 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKGA YLE H D+ EFL+LRKNTG + R D+ A W+ D FMKRV W+LF Sbjct: 290 RRKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLF 349 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E L D++G ++ YE YE E K + I A LW ++ ETG P++ Sbjct: 350 CPHECPGLSDVWGDDYVALYEKYE-----SEGKARKTIPAQKLWFAIMDSQIETGTPYML 404 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD CN +S QQH+G + SNLCTEI ++ +ETAVCNL SI L + + FD+ L Sbjct: 405 YKDSCNRKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPSFVKDGSFDHQHLY 464 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 A LD VID N + I +A++SN HR IGLG+ G +L I + SP+A + Sbjct: 465 DVTYHATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKISFDSPDARVL 524 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 E E + F A++AS +LA+ +G YS+++GS G F D + + Sbjct: 525 NKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLSNGKFQFDMWNVTP----------SV 574 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 R WD L+ VK G RNS A PTA+ A I G ++ +P NLY + +SG+F VV Sbjct: 575 RWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVV 634 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N +LV +L R LW ++M + + +GS+ NI P+DLK I+ T +EI LI+ A+ Sbjct: 635 NKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAAD 694 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 R +I Q+QS N+++ +P+ KL ++ W GLKT Sbjct: 695 RGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKT 731 >gi|323308679|gb|EGA61920.1| Rnr3p [Saccharomyces cerevisiae FostersO] Length = 887 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 263/818 (32%), Positives = 415/818 (50%), Gaps = 40/818 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 ++ ++ DG ++ + GL + + V +Y G++ +L+ Sbjct: 16 QMYVIKRDGXKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNL 75 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + + P+YA + AR + L ++ K ++ L+ + Sbjct: 76 AAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGK 127 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +++ + L + + Y+RDF + Y G + L Y L +NG E PQ Sbjct: 128 HAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLV 187 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + E ++ YNL+S +F ++PTLFN+GT HPQ+SSCFL + DD + Sbjct: 188 MRVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSI 244 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+E AM++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+Q Sbjct: 245 EGIYDTLKECAMISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQ 304 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA +LE WH D+ +F+D+RK G + R D+ A WIPDLFMKRV ++ W Sbjct: 305 GGNKRPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPW 364 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLFSP L D++G EFE Y YER+ + I A LW +L ETG+ Sbjct: 365 TLFSPSXAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGNT 418 Query: 560 WITFKDPCNIR--SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ 611 + F + QQ++G + SSNLC EI SS +ETAVCNL SI L A Sbjct: 419 FPWFYKDACKQEGQNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDG 478 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +++++L + L+ VID N + + +A+ SN HR I LG+ G +L Sbjct: 479 KTASYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTXMMLR 538 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +P+ S EA + + E I + AS ELAQ+ G YS+F+GS +G+ D Sbjct: 539 LPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP- 597 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K + G+RNS MA PTA+ + I G ++ +P N+Y Sbjct: 598 ---------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYS 648 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + +SG+F VVN +L+ +L +WD++M L +GSI + +P +LK+++ T +EI Sbjct: 649 RRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEI 708 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT YYLR+++A++ Sbjct: 709 SQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASA 768 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 + T+ A + + + +P Sbjct: 769 AIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSE 806 >gi|325114109|emb|CBZ49667.1| putative ribonucleoside-diphosphate reductase, large subunit [Neospora caninum Liverpool] Length = 886 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 290/850 (34%), Positives = 439/850 (51%), Gaps = 67/850 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + ++ +E+ GL V V MY G+ S+L+ Sbjct: 61 MYVVNRRGEEEPVSFDQILKRIEKLSFGLHPLVDPARVAQAVINGMYAGIRTSELDDLAA 120 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +S + P+++K+ AR ++ L + ++ Y + E Sbjct: 121 QTSAYMAASHPDFSKLAARIAIDNLHKNTTDNFLTVIEQL---------HGYVDKLGREA 171 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + + L L Y RDF ++Y G + L Y L I+ +E PQ MR Sbjct: 172 KLVSTEVYEFVKANEKALNEALNYSRDFEYDYFGFKTLERSYLLKIHDRIVERPQHMLMR 231 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 VA G+ E+ AVE Y L+S F +TPTLFN+GT PQ+SSCFL T+ D + G Sbjct: 232 VACGIHCGNVER---AVETYELMSQKFFTHATPTLFNAGTPRPQMSSCFLLTMQEDSIDG 288 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF L++ A+++K +GGLG T +R ++I GTNG S G++P L+V ND A V+QGG Sbjct: 289 IFSTLKQCALISKTAGGLGLAVTDIRATNSYIRGTNGYSNGLLPMLRVFNDAARYVDQGG 348 Query: 443 -KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KRKG++ YLE WH DV +FLD++KN G + RR D+ A WIPDLFM+RV NAGWTL Sbjct: 349 GKRKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTL 408 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L +++G+EF+ YE YER E + + I A LW +L ETG P++ Sbjct: 409 MCPNECPGLTEVWGEEFKELYERYER-----EGRGRKTIPAQHLWFAILQAQIETGTPYM 463 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619 +KD CN +S Q+++G + SNLCTE+ +S +E AVCNL S++L FDY+ Sbjct: 464 LYKDACNRKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRETRTFDYE 523 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L ++ R L+ VID N + + +AK SN HR +GLG+ G A LL P+ SPEA Sbjct: 524 HLKKIVKVMTRNLNRVIDRNYYPVPEAKNSNLRHRPVGLGVQGLADAFMLLRYPFDSPEA 583 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + E I + A+ AS ELA E G Y++++GS QG+ D G+ Sbjct: 584 RLLNRNIFECIYYAALEASCELAAEEGPYATYEGSPMSQGILQFDMWGVTP--------- 634 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W L++++K G+RNS ++ PTA+ + I G +++ +P N+Y + +SG+F Sbjct: 635 SSGLCDWSALREKIKKHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEF 694 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VVN L+ +L +RDLW E + L H+G + N++ IPDDLK ++ T +EI +++ Sbjct: 695 FVVNPHLLRDLLERDLWSEDVKQQLIAHNGCVLNMDVIPDDLKALYKTVWEIKQRVVLDL 754 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK- 917 A R +IDQ+ SLN+++ P+ KL ++ W GLKT YYLR+++A K T+ Sbjct: 755 AIDRSPYIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDS 814 Query: 918 ---------------------------GVDGKLNAVPVTDPNSSTHSLGIPSSC------ 944 + K V DP + + C Sbjct: 815 QLAMSAKAKLSGSTFSGVLTTTTSSAADEETKRQDVGSADPVETARTEASGPVCRWRPKG 874 Query: 945 -TSDTECEVC 953 + D CE+C Sbjct: 875 ASPDEPCEMC 884 >gi|335682|gb|AAA48274.1| Vaccinia virus matrix 1 protein Length = 771 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 276/814 (33%), Positives = 438/814 (53%), Gaps = 50/814 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + ++ + + C GL + + + + +Y+G++ +L+T Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + T + P+YA + AR + L +E +K M+ L+ + + Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKET--------KKLFSEVMEDLFNYVNPKNGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + + YERDF++ Y G + L Y L IN +E PQ M Sbjct: 113 SPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ A+E YNLLS F ++PTLFN+GT Q+SSCFL + D + Sbjct: 173 RVAVGIHQ---WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA ++QG Sbjct: 230 GIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR G + YLE WH D+ FLDL+KNTG++ RT D+ A WIPDLFMKRV + W+ Sbjct: 290 GNKRPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L PDE L +++G EFE Y YER E + I A +W+ ++ ETG P+ Sbjct: 350 LMCPDECPGLDNVWGDEFERLYTLYER-----ERRYKSIIKARVVWKAIIESQIETGTPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S QQ++G + SNLCTEI + + E AVCNLGS+ L + +FD+ K Sbjct: 405 ILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLGSVALNMFVIDGRFDFLK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++ VR L+ +IDIN + I +A+ SN HR IG+G+ G A LL+ P+ S EA Sbjct: 465 LKVVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQ 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 +I + E I + A+ AS ELA++ G Y ++ GS G+ D ++ Sbjct: 525 DINKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVP---------- 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W+ LK +++T G+RNS +A P A I G ++S++P N+Y + +SG+F Sbjct: 575 SDLWNWEPLKDKIRTYGLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIYTRRVLSGEFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ L +R LW++ + + + GSI N +P+D+K+++ T +EI +I+ A Sbjct: 635 VVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+N+++ +PS KL ++ W +GLKT YYLR++ A++ + TL Sbjct: 694 ADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKD 753 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K P C C Sbjct: 754 KIK------------------PPVVCDSEICTSC 769 >gi|312599278|gb|ADQ91301.1| hypothetical protein BpV2_134c [Bathycoccus sp. RCC1105 virus BpV2] Length = 748 Score = 660 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 264/780 (33%), Positives = 419/780 (53%), Gaps = 43/780 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 +++ G + + + + GL + V + + + ++YDG+ +++T Sbjct: 1 MRVTKRSGRVEDVKFDNVTNRISKLTEGLSETVDVTKIAQQVFSSIYDGIKTPEIDTLSA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +I +P+Y + R +++ + +K + +++ Sbjct: 61 EICIGMITSDPDYEILATRITASNIQKRAANNFHIAMRKLHKAGIVTHEVLEVSSKVKDD 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 +K ERDF F Y GL+ L Y I+G IE PQ +MR Sbjct: 121 ---------------------IKPERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYMYMR 159 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382 VA+G+ + +E Y LS F+ +TPTLFN+GT PQ+SSCFL + D + G Sbjct: 160 VAIGIHGHD---IDHVLETYEALSKGLFIHATPTLFNAGTPRPQMSSCFLISNKEDSIDG 216 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++E A ++K++GG+G VR +HI GTNG S G+IP L+V N TA VNQ G Sbjct: 217 IYDTVKECARISKWAGGIGLHIHDVRANKSHIRGTNGTSDGIIPMLRVYNTTARYVNQAG 276 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKG++ YLE WH D+ +FL++R N GD+ R D+ +A WIPDLFMKRV W+LF Sbjct: 277 RRKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESGGNWSLF 336 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 PD L D+YGKEFE YE YE + + + A +W+ ++ ETG P++ Sbjct: 337 CPDVARGLSDVYGKEFEELYEKYEA-----DGIATKVVPASEVWKAIIKSQSETGTPYML 391 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620 +KD CN +S +H+G + SSNLCTEI + +ETAVCNL SI L + +F++++ Sbjct: 392 YKDACNEKSNHKHIGTIKSSNLCTEIVEYTDKDETAVCNLASIALPKYVDVEKKEFNHEE 451 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ VID N + E K+SN HR IG+G+ G +L + + S E+ Sbjct: 452 LHRVTKMVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESR 511 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I ++ +S ELA+ G Y SFKGS + +G+ D + Sbjct: 512 KLNIDIFETIYHASLESSCELAEMYGPYESFKGSPFSKGILQFDMWDRDPKFSG------ 565 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 R W+ +++ VK G NS +A PTA+ + I G ++ +P N+Y++ ++G+F Sbjct: 566 --RYDWNAMRELVKK-GTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFV 622 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN LVN+LK+R LW + M + +GS+ NI IPDDLK+++ T +E+ +I+ A Sbjct: 623 VVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMA 682 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+NL+++ P+ KL ++ AW GLKT YYLRS++ + + +L+ Sbjct: 683 ADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLEAE 742 >gi|66810005|ref|XP_638726.1| ribonucleotide reductase large subunit [Dictyostelium discoideum AX4] gi|74854399|sp|Q54Q71|RIR1_DICDI RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|60467345|gb|EAL65376.1| ribonucleotide reductase large subunit [Dictyostelium discoideum AX4] Length = 870 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 266/808 (32%), Positives = 416/808 (51%), Gaps = 43/808 (5%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACS-----GLQDVSSKIVLSETYK 187 + K+ ++ DGT + + ++ + C V V + Sbjct: 4 NSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVS 63 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 ++ G+ ++L+ ++ + + P+Y + AR + L ++ + + +K +E Sbjct: 64 GVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKK--QYE 121 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 + + + ++ L + + Y RDF +++ G + L Y Sbjct: 122 FINPKSNLLAPLVSKELYEIVMKHG------ERLESVIDYYRDFDYDFFGFKTLERSYLH 175 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 ING +E PQ MRV++G+ E + A+ Y LS F +TPTLFN+GT PQ Sbjct: 176 RINGKIVERPQHMLMRVSIGIHG---EDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQ 232 Query: 368 LSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +SSCFL + D + GI+ L++ A+++K +GG+G +R ++I GTNG S G++P Sbjct: 233 MSSCFLVQMKEDSIDGIYDTLKQCALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVP 292 Query: 427 FLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+V NDTA V+QGG KRKGA YLE WH DV EF+DL+KNTG + R D+ A W+ Sbjct: 293 MLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWV 352 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D+FM+RV QN W LF P+E L + + +E Y YE D R I A L Sbjct: 353 SDIFMERVEQNGDWALFCPNEAPGLAETHSEEHRALYLKYEATPDLPR----RVIKAQEL 408 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ETG P+I +KD CN +S Q+++G + SSNLCTEI +S +E AVCNL SI Sbjct: 409 WFAIMESQVETGTPFILYKDACNAKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASI 468 Query: 606 NLLAH---------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 L +FD+ L + L+ +ID N + + +AK SN HR I Sbjct: 469 ALPKFVRQKVGSTDPKEKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPI 528 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G+ G + +P+ S A ++ E E I F A++AS ELA G Y SFKGS Sbjct: 529 GIGIQGLADVFIKMRMPFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPA 588 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV-KTIGMRNSNCMAIAPTATIANI 775 +G+ D + +SR W ELK + G+RNS +A PTA+ + I Sbjct: 589 SKGILQFDMWNVTP----------SSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQI 638 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G ++ +P N+Y + ++G+FT+VN L+ +L + +W M + + GSI +I Sbjct: 639 LGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIG 698 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 IPDDLK+++ T +EI LI+ A+ R +IDQ+QS N+++ EP+ KL ++ +W Sbjct: 699 GIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKK 758 Query: 896 GLKT-TYYLRSRSATSVEKSTLKGVDGK 922 GLKT YYLR+R A + T+ + + Sbjct: 759 GLKTGMYYLRTRPAADAIQFTVDPIVSQ 786 >gi|313233631|emb|CBY09802.1| unnamed protein product [Oikopleura dioica] gi|313245650|emb|CBY40318.1| unnamed protein product [Oikopleura dioica] Length = 832 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 286/856 (33%), Positives = 438/856 (51%), Gaps = 74/856 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 LK+ DG L ++ +++ C L +S V + +YDG++ +L+ Sbjct: 3 DLKVKKRDGRLEEVFFDKITSRIKKLCYNLDMNILSPLSVTRKVIDGIYDGVTTVELDNL 62 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ + P+YA + AR + L +E + + + E + Sbjct: 63 AAETAAQMSVNHPDYAILAARISVSNLHKETKKLFTEVIEDLRNVEGY---------NGK 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + ++ + L + + ++RD+ + Y G + L Y + I+G IE PQ Sbjct: 114 KKPLISEKTYKIVVANKDKLNSAVIHDRDYEYNYFGFKTLERSYLMKIDGKTIERPQHML 173 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRV++G+ E A+E YN +S +F ++PTLFNSGT PQ+SSCFL + DD + Sbjct: 174 MRVSVGIHG---EDIDAALETYNFMSLKYFTHASPTLFNSGTPRPQMSSCFLVAMQDDSI 230 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA V+Q Sbjct: 231 EGIYDTLKTCALISKNAGGIGVNVHNIRARGSYIGGTNGHSNGLIPMLRVYNNTARYVDQ 290 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 G KR GA YLE WH D+ EFLD +KNTG + R D+ A WIPDLFMKRV N W Sbjct: 291 GGNKRPGAFAVYLEPWHADIFEFLDAKKNTGSEETRARDLFYALWIPDLFMKRVESNGDW 350 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLF PDE LH+ +G+EFE +E YE+ E + I A ALW K++ E G P Sbjct: 351 TLFCPDEAPGLHECWGEEFEALFEKYEK-----EGRGKETIKAQALWYKIIEAQIEVGVP 405 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ---- 615 ++ +KD CN +S QQ++G + SNLCTEI SS +E AVCNL S++L A N Sbjct: 406 YMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYSSKDEVAVCNLASLSLPAFIRKNDQGFS 465 Query: 616 -FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +D+ L + R L+ VIDIN + +E+A+ SN HR IG+G+ G +L + + Sbjct: 466 VYDFQDLYDKTKIVTRNLNKVIDINFYPVEQARFSNMQHRPIGIGVQGLADTFCMLKLAF 525 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAY------------SSFKGSLWDQGVFP 722 S EA + + E I F A+ AS ELA++ G Y S QG F Sbjct: 526 ESDEAKLLNKQIFETIYFAAVEASCELAEKEGPYLSFRAHTHPITGQKNPDSPMAQGKFQ 585 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D G+ T WD L+++V G+RNS ++ PTA+ A I G ++SI Sbjct: 586 FDLWGVTP----------TDLWDWDSLREKVTRHGVRNSLLVSPMPTASTAQILGNNESI 635 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P N+Y + +SG+F VVN L+ EL + + WD+ + + +GSI N++ IP D+K Sbjct: 636 EPFTNNIYTRRVLSGEFQVVNPHLLRELTEINYWDDEIRQQIVQDNGSIQNLD-IPADIK 694 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TY 901 + + T +EI +++ A+ R +IDQ+QSLN+++ +P L ++ W MGLKT Y Sbjct: 695 ERYRTVWEIKQKNVLQMAADRGPFIDQSQSLNIHVAQPKYGTLTSMHFTGWKMGLKTGMY 754 Query: 902 YLRSRSATSVEKSTLKGVDGKLNAV------------------------PVTDPNSSTHS 937 YLR++ A + K T+ K+ P D + Sbjct: 755 YLRTKPAAAAIKFTVDKSKVKVEEKENVEVKIEAATKSPVKAVSSLKEGPSEDDIRRLNE 814 Query: 938 LGIPSSCTSDTECEVC 953 + S + C +C Sbjct: 815 AALVCSLENKEACMMC 830 >gi|131840167|ref|YP_001096176.1| ORF141 [Cyprinid herpesvirus 3] gi|84181499|gb|ABC55102.1| hypothetical protein [Cyprinid herpesvirus 3] gi|109706742|gb|ABG42968.1| ORF141 [Cyprinid herpesvirus 3] gi|129560660|dbj|BAF48955.1| ribonucleotide reductase large subunit [Cyprinid herpesvirus 3] Length = 806 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 271/829 (32%), Positives = 430/829 (51%), Gaps = 43/829 (5%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 + + DGT + ++ + E + V +++ + + +G S+++ Sbjct: 2 EDTIYVTKRDGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDEL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 L ++ + P+Y+K+ AR + L + + ++ +F + Sbjct: 62 LAHTASNMTTTHPDYSKLAARIAVTNLHKLTSPKFSEVCKRL-----------WFNVNPD 110 Query: 262 EGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 G++A L+ + + L +++ DF + Y G + L Y L IE PQ Sbjct: 111 TGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQ 170 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 MR A+ + ++ Y LSS +F ++PTLFNS + PQLSSCFL + Sbjct: 171 HTLMRCALQIHGD---NIDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKS 227 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI ++ A+++K++GGLG + +RG GA+I GTNG S G++P L++ N Sbjct: 228 DSMEGIADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERM 287 Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QG KR GA+ Y+E WH+DV +FL+LRKNTG D +RT D+ A WIPDLFM+RV Sbjct: 288 VDQGGNKRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDG 347 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+L P L +++G EFE Y YE E K R + A LW +L ET Sbjct: 348 GEWSLMCPASCPGLDEVWGPEFEALYTRYEA-----EGKARRTVKARDLWNSVLVAQLET 402 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612 G P++ +KD CN +S QH+G + SNLCTEI ++SEE AVCNL S+ L Sbjct: 403 GGPFMLYKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIA 462 Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 ++D+ LA +R R L+ VID N + + +A +SN HR IG+G+ G ++ Sbjct: 463 EDPYEYDFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMM 522 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 IP+ +A ++ E I + A+ S +LAQ G Y +++GS +G+ D GL Sbjct: 523 GIPFTCGKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKR 582 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E + + W+EL+ R++ G+RNS ++ PTA+ A I G ++SI+P NLY Sbjct: 583 E-------DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLY 635 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VVN LV L++ LW++ M + L H GS+ NIE P+ LK I+ TA+E Sbjct: 636 QRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYE 695 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL----DEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 I LI A+ R ++DQ+QSLNL+L + KKL ++ AW GLKT YYLR+ Sbjct: 696 ISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRT 755 Query: 906 RSATSVEKSTLKGV-DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++A + + ++ + + + S+ ++ C +C Sbjct: 756 KAAVAPVQFSVAPEVSAEASRKRRAEDGSAFSKQPKLEVVCNEEVCTMC 804 >gi|68629683|gb|AAY99446.1| ribonucleotide reductase [Cyprinid herpesvirus 3] Length = 806 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 271/829 (32%), Positives = 430/829 (51%), Gaps = 43/829 (5%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 + + DGT + ++ + E + V +++ + + +G S+++ Sbjct: 2 EDTIYVTKRDGTKEPLDMAKVVERINECGFRSESVDPQLLAQKIEPGIGNGCKTSEIDEL 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 L ++ + P+Y+K+ AR + L + + ++ +F + Sbjct: 62 LAHTASNMTTTHPDYSKLAARIAVTNLHKLTSPKFSEVCKRL-----------WFNVNPD 110 Query: 262 EGVKARLLHESMMD---FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 G++A L+ + + L +++ DF + Y G + L Y L IE PQ Sbjct: 111 TGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFKTLERSYMLKGPEGPIETPQ 170 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 MR A+ + ++ Y LSS +F ++PTLFNS + PQLSSCFL + Sbjct: 171 HTLMRCALQIHGD---NXDALLQTYGFLSSRYFTHASPTLFNSCSPKPQLSSCFLLNMKS 227 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI ++ A+++K++GGLG + +RG GA+I GTNG S G++P L++ N Sbjct: 228 DSMEGIADTIKSCALISKHAGGLGMSISNLRGKGAYIKGTNGHSNGIVPTLRIFNALERM 287 Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QG KR GA+ Y+E WH+DV +FL+LRKNTG D +RT D+ A WIPDLFM+RV Sbjct: 288 VDQGGNKRPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDG 347 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+L P L +++G EFE Y YE E K R + A LW +L ET Sbjct: 348 GEWSLMCPASCPGLDEVWGPEFEALYTRYEA-----EGKARRTVKARDLWNSVLVAQLET 402 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA---- 612 G P++ +KD CN +S QH+G + SNLCTEI ++SEE AVCNL S+ L Sbjct: 403 GGPFMLYKDACNAKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIA 462 Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 ++D+ LA +R R L+ VID N + + +A +SN HR IG+G+ G ++ Sbjct: 463 EDPYEYDFQLLADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMM 522 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 IP+ +A ++ E I + A+ S +LAQ G Y +++GS +G+ D GL Sbjct: 523 GIPFTCGKARDMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKR 582 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E + + W+EL+ R++ G+RNS ++ PTA+ A I G ++SI+P NLY Sbjct: 583 E-------DLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLY 635 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VVN LV L++ LW++ M + L H GS+ NIE P+ LK I+ TA+E Sbjct: 636 QRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYE 695 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL----DEPSGKKLDFIYRQAWLMGLKT-TYYLRS 905 I LI A+ R ++DQ+QSLNL+L + KKL ++ AW GLKT YYLR+ Sbjct: 696 ISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRT 755 Query: 906 RSATSVEKSTLKGV-DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++A + + ++ + + + S+ ++ C +C Sbjct: 756 KAAVAPVQFSVAPEVSAEASRKRRAEDGSAFSKQPKLEVVCNEEVCTMC 804 >gi|50549777|ref|XP_502360.1| YALI0D03333p [Yarrowia lipolytica] gi|49648228|emb|CAG80548.1| YALI0D03333p [Yarrowia lipolytica] Length = 849 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 257/812 (31%), Positives = 416/812 (51%), Gaps = 35/812 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + + + C L V S+ + +T +DG+S +L Sbjct: 1 MHVVKRGGQREPMDMAKFTRRLTALCFNLSSVVSATEIAQKTVDGAFDGVSTVELNNLAS 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ L+ + P+Y + AR + L ++ Q+ ++ + E Sbjct: 61 ETAAALMTRHPDYGVLAARLSVSNLHKQTSDKFVNVMQQLYDNKDETG---------EHA 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 L L + Y RD + Y G + L Y L + G+ +E PQ MR Sbjct: 112 PLVTLALLERAQNHGETLELAISYYRDMTYSYFGFKTLEKSYLLRVGGNVVERPQHMLMR 171 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 VA+G+ + K E Y LS F ++PTLFN+GT QLSSCFL + D + G Sbjct: 172 VALGIHGDDIFKV---RETYQALSLRKFTHASPTLFNAGTPQGQLSSCFLVAMAADSIDG 228 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I+ L+ A ++K +GG+G +R GA I G+ G+S G++P L+V N+TA V+QG Sbjct: 229 IYDTLKTCAQISKTAGGIGLHIHNIRAKGALITGSQGRSSGIVPMLRVFNNTARYVDQGG 288 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA YLE WH D+ +FL+LRKN G + R D+ A W+PDLFM++V W+L Sbjct: 289 NKRPGAFAVYLEPWHADILDFLNLRKNHGAEENRARDLFYALWVPDLFMRKVENGEKWSL 348 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + L D++G+EF+ YE+YE + +I A L++ +LT ETG P++ Sbjct: 349 FCPRKAPGLADVWGEEFDRKYEDYE-----SKGLYNSQIDAQELFKAILTSQIETGGPFM 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF----ANNQFD 617 +KD CN +S Q+++G + SSNLCTEI SS +E AVCNL S+ L ++ ++ Sbjct: 404 LYKDSCNAKSNQKNLGTIKSSNLCTEIVQYSSPDEVAVCNLASVALPEFVQLKGSSGSYN 463 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + +L T++ R L+ +I+ NC+ +++A+ SN HR I +G+ G L +P+ SP Sbjct: 464 FGELHETVKHMTRNLNCIIEANCYPVKEAETSNKRHRPIAVGVQGLADVFMKLRMPFDSP 523 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA E+ E I A AS+ELA E G Y +++GS QG D Sbjct: 524 EAAELNVLIFETIYHAACEASIELAAELGPYETYEGSPASQGKLQFDLWNKTP------- 576 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W LK ++ GMRNS +A PTA+ + I G ++ +P N+Y++ +G Sbjct: 577 ---SDLWDWARLKTKLAKHGMRNSLLVAPMPTASTSQILGHNECFEPYTSNIYLRRVQAG 633 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN +L+ +L + +W E M + + + +GSI +I +IP+ ++ ++ TA+EI +I Sbjct: 634 EFLVVNQWLMKDLIKLGMWTEEMKNRIIHDNGSIQSITQIPEHIRAVYRTAWEIKARNII 693 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A+ R +IDQ+QSLN+++ E + K+ ++ W GLKT YYLR+ A + T+ Sbjct: 694 DMAAARAPYIDQSQSLNIFMPEITHGKITAMHFHGWKAGLKTGMYYLRTPPAAHAIQFTV 753 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 + PV + + + + Sbjct: 754 DKTLLQNIQDPVGEVDPVVYEPPSMPWASESP 785 >gi|327287998|ref|XP_003228715.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Anolis carolinensis] Length = 745 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 270/818 (33%), Positives = 419/818 (51%), Gaps = 84/818 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVVKRDGRHERVMFDKITSRIQKLCYGLNVDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYTYVNPHNSKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L IN E PQ M Sbjct: 113 SPMIAKETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIHKND---IDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKHCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHFDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V R + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRRVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + +KD CN +S QQ++G + SNLCTEI +S++E V Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSNDEAEV--------------------- 443 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 SN HR IG+G+ G A L+ P+ SPEA Sbjct: 444 ----------------------------SNKRHRPIGIGVQGLADAFILMRFPFESPEAQ 475 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E I + A+ AS LA+E G Y +++G +G+ D ++ Sbjct: 476 LLNQQIFETIYYAALEASCNLAKECGPYETYEGCPLSKGILQYDMWNVVP---------- 525 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F Sbjct: 526 TDLWDWKALKEKIAKHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQ 585 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN L+ +L +R LW+E M + + +GSI I IPDDLK ++ T +EI +++ A Sbjct: 586 IVNPHLLKDLTERGLWNEEMKNQIIACNGSIQTIPEIPDDLKLLYKTVWEISQKTVLKMA 645 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR++ A + + TL Sbjct: 646 ADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKE 705 Query: 920 DGKLNAVPVTDPNSST----HSLGIPSSCTSDTECEVC 953 + + + + S + EC +C Sbjct: 706 KLNKEKSSIGEEEEEAKKERNKAAMVCSLENRDECLMC 743 >gi|289582311|ref|YP_003480777.1| ribonucleoside-diphosphate reductase, subunit alpha [Natrialba magadii ATCC 43099] gi|289531864|gb|ADD06215.1| ribonucleoside-diphosphate reductase, alpha subunit [Natrialba magadii ATCC 43099] Length = 836 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 405/828 (48%), Positives = 542/828 (65%), Gaps = 41/828 (4%) Query: 162 LEMIVEEACSGLQDV----SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYA 217 +E +++ A +G ++V + +E +N+YDG S + A++ + IE+EP Y Sbjct: 15 IESVLDRAQTGTEEVLSPAERDQLATEIERNLYDGASPDECYQAILQALTARIEREPTYK 74 Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-F 276 ++ A ++ R VL + T ++ Y + F +E V+ LL E +++ F Sbjct: 75 QLAAAVFRQRYYRTVLG------EDLTGAALETAYRDTFVTNLERAVELDLLDERLLERF 128 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETE 334 DL LA L+ ERD FEY+ ++ L RYFL NG +E+PQAF+MRVAMGLAL+E + Sbjct: 129 DLEKLAAALELERDEQFEYMAMETLTQRYFLKTEENGEHLELPQAFWMRVAMGLALEEDD 188 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 ++RA+EFY++LS+ F STPTLF+SG+ HPQLSSC+LTTV D L IF + + +A L+ Sbjct: 189 PQQRALEFYDVLSALEFTPSTPTLFHSGSTHPQLSSCYLTTVQDSLENIFDSYKHHAQLS 248 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K+SGGLGNDWT +R GA I T +S GV+PFL+++ND A+N+ GKR+GA CAYL Sbjct: 249 KWSGGLGNDWTNLRSAGALIESTGVESTGVVPFLRISNDVTSAINRSGKRRGAACAYLAC 308 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH+D F DL++NTGD+RRRT DMNTA WIPDLFMKRV + WTLFSPDEV +LHDL Sbjct: 309 WHLDFPAFTDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEADEEWTLFSPDEVPELHDLS 368 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+ FE Y YERQAD GE++ + ++ A LWR MLT LFETGHPW+TFKDPCN+RSPQ Sbjct: 369 GEAFEERYCEYERQADNGELRQYERVDAAELWRTMLTRLFETGHPWLTFKDPCNVRSPQD 428 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 HVG VHSSNLCTEITLN+S++E AVCNLGS+NL H ++ + D + LA TI TA+R+LDN Sbjct: 429 HVGTVHSSNLCTEITLNTSADEHAVCNLGSVNLATHVSDGELDREHLADTIETAMRMLDN 488 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+D+ + E+AK+SN HR +GLG MGF AL L IP S +AVE A+ EF+S+HA Sbjct: 489 VVDLCFYPTEEAKRSNMRHRPVGLGTMGFHDALMELGIPMDSEDAVEAANRWQEFVSYHA 548 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753 I S +LA ERGAY S++GS WD+G+ P D++ LL + RD E+ +R L W +++ V Sbjct: 549 ILNSSKLAGERGAYPSYEGSKWDRGLLPQDTVDLLEDERDREIPTDREETLEWATVREHV 608 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSGDFTV+N LV +LK R Sbjct: 609 AEHGMRNSNTMAIAPTATVSTINGTTPSIEPIYSNLYVKSNMSGDFTVINDKLVADLKAR 668 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 D WD+ M+ LK+HDGS+ I+ +PDDL++++ AFEIDP + + RQ WIDQ+ S Sbjct: 669 DRWDDEMVDRLKFHDGSVQEIDTVPDDLQELYRGAFEIDPRHQLRLTAHRQTWIDQSVSH 728 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK----------GVDGKL 923 N++ G LD +YR AW +GLKTTYYLR+ A+ +EKSTL D Sbjct: 729 NVFFPSTDGSLLDDVYRTAWELGLKTTYYLRTLGASQIEKSTLDMGEYGKTQHRDSDSAA 788 Query: 924 NAVPVTDPNSSTHSLGIPS-----------------SCTSDTECEVCQ 954 D +++T S P D CE CQ Sbjct: 789 RFDGDDDDSTNTDSDPDPGSGSDTDSDSDPGSGDELCRVDDPTCEACQ 836 >gi|313768128|ref|YP_004061559.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599735|gb|ADQ91756.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1] Length = 748 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 268/780 (34%), Positives = 421/780 (53%), Gaps = 43/780 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 +++ G + + + + GL + V + + + ++YDG+ +++T Sbjct: 1 MRVTKRSGRVEDVKFDNVTNRISKLTEGLSETVDVTKIAQQVFSSIYDGIKTPEIDTLSA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +I +P+Y + R +++ + +K + +++ Sbjct: 61 EICIGMITSDPDYEILATRITASNIQKRAANNFHIAMRKLHKAGIVTHEVLEVSSKVKDD 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 +K ERDF F Y GL+ L Y I+G IE PQ +MR Sbjct: 121 ---------------------IKPERDFEFGYFGLKTLEKGYLQKIDGEIIETPQYLYMR 159 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382 VA+G+ + +E Y LS F+ +TPTLFN+GT PQ+SSCFL D + G Sbjct: 160 VAIGIHGHD---IDHVLETYEALSKGLFIHATPTLFNAGTPRPQMSSCFLIANKEDSIDG 216 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++E A ++K++GG+G VR +HI GTNG S G+IP L+V N TA VNQ G Sbjct: 217 IYDTVKECARISKWAGGIGLHVHDVRANKSHIRGTNGTSDGIIPMLRVYNSTARYVNQAG 276 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKG++ YLE WH D+ +FL++R N GD+ R D+ +A WIPDLFMKRV + W+LF Sbjct: 277 RRKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESDGNWSLF 336 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 PD+ L D+YGKEFE YE YE E + + A +W+ ++ ETG P++ Sbjct: 337 CPDQAKGLSDVYGKEFEDLYEKYE-----SEGIATKVVPASEIWKAIIKSQSETGTPYML 391 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDYDK 620 +KD CN +S +HVG + SSNLCTEI + EETAVCNL SI L + N+F++++ Sbjct: 392 YKDACNEKSNHKHVGTIKSSNLCTEILEFTDKEETAVCNLASIALPKYVDVEKNEFNHEE 451 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + R L+ VID N + E K+SN HR IG+G+ G +L + + S E+ Sbjct: 452 LHRVTKMVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESR 511 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 ++ + E I ++ +S ELA+ G Y +FKGS + +G+ D + Sbjct: 512 KLNIDIFETIYHASLESSCELAEMYGPYETFKGSPFSKGILQFDMWDRDPKFSG------ 565 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 R W+ ++K VK G NS +A PTA+ + I G ++ +P N+Y++ ++G+F Sbjct: 566 --RYDWNAMRKLVKK-GTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFV 622 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN LVN+LK+R LW + M + +GS+ NI IPDDLK+++ T +E+ +I+ A Sbjct: 623 VVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMA 682 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+QS+NL+++ P+ KL ++ AW GLKT YYLRS++ + + +L+ Sbjct: 683 ADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLEAE 742 >gi|269963258|ref|ZP_06177591.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832006|gb|EEZ86132.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 752 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 279/812 (34%), Positives = 440/812 (54%), Gaps = 65/812 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ DG + ++ E GL+ V V +YDG+ ++++ L Sbjct: 1 MDVIKRDGRKEKASLDKVTRRAEALADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAE 59 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ +L + P+YAK+ AR ++ L++E + + + Y ++ + Sbjct: 60 TAASLATEHPDYAKLAARVMVSSLQKETSGYATATRELSEIGILSDTYVDFAAK------ 113 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + L + Y+RD+ F+Y G + L Y L + G +E PQ FMRV Sbjct: 114 ------------NQFALEEMIDYKRDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRV 161 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383 A+ +A + + E Y+LLS ++ +TPTLFN+G + QLSSCFL + D + GI Sbjct: 162 AVAVAGDD---LEEIRELYDLLSHGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGI 218 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 + L++ A+++K +GG+G +R GA I GTNG S G++P LKV N+TA V+QGG Sbjct: 219 YDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGG 278 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKG+ YLE WH D+E FLDLRKN G + R D+ A W+PDLFM+RV +A WTLF Sbjct: 279 KRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLF 338 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP L DLYG EF Y+ YER + I A L +++ ETG P++ Sbjct: 339 SPHNTKGLSDLYGAEFTQKYQEYERMGL-----GVKTIKARQLMTQIIESQAETGTPYML 393 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD CN +S Q+++G + SSNLC EI S+ +ETA CNL S+ L ++ FD+DKL Sbjct: 394 YKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVTDSGFDFDKLH 453 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + A++ LD VID+N H +K +KSNH HR +GLG+ G +H+P+ S EA+++ Sbjct: 454 QVTKVAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQL 513 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E + ++ AS E+A ++GAYSS+ GS G F D +S Sbjct: 514 NRDIAETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWDEQP----------SS 563 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 R W +LK+++ G+RNS +A PTA+ A I G +++ + N+Y + +SG+F ++ Sbjct: 564 RWDWSQLKRQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIII 623 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LV++L+QR LW + + ++GS+ I+ IPDDL+ ++ T +EI +I+ ++ Sbjct: 624 NKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAA 683 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921 R ++ Q+QSLNL+L P+ +++ ++ AW GLKT YYLRS+ +T+ K T+ Sbjct: 684 RAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTVGQQ-- 741 Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + D +C C Sbjct: 742 -----------------------SEDEDCLNC 750 >gi|117928931|ref|YP_873482.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus cellulolyticus 11B] gi|117649394|gb|ABK53496.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus cellulolyticus 11B] Length = 781 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 320/815 (39%), Positives = 465/815 (57%), Gaps = 39/815 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ +G + ++ VE L DV V ++T +YDG + ++L+ I Sbjct: 1 MRVRKRNGDTEPVDVNKIVRAVERWADDLTDVDPLRVATKTISGLYDGATTAELDRLSIQ 60 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y+K+ AR L + +EV + + + + + E Sbjct: 61 TAAELIAEEPQYSKLAARLLAAYIEKEV----HNQGIASFSQSIALGHAEGL-------- 108 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322 + + + + D FEY GL+ +YDRY L SR IE PQ F + Sbjct: 109 -IGDETARFVKDNARKFDFAIDPKGDQRFEYFGLRTVYDRYLLRHPTSRLVIETPQYFLL 167 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA GLA E A+EFY L+S ++ S+ TLFNSGTRHPQ+SSC+L P D+L Sbjct: 168 RVACGLARTPAE----AIEFYRLMSELAYLPSSATLFNSGTRHPQMSSCYLVDSPRDELD 223 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ + A L+K++GG+G ++ VR GA I GTNG S G++PFLK + + AVNQG Sbjct: 224 SIYARYHQVARLSKFAGGIGIGFSRVRSRGALIRGTNGHSNGIVPFLKTLDASVAAVNQG 283 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+RKGA C YLE WH D+EEFL+LR NTG+D RRT+++N ANWIPD FM+RV + W+L Sbjct: 284 GRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADELWSL 343 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 PD+ +L DL+G +F+ AY E E + R++ A L+ KM+ L ETG+ W+ Sbjct: 344 IDPDQAPELVDLWGADFDAAYRRAEA-----EGRYVRQVRARDLYAKMMRTLAETGNGWM 398 Query: 562 TFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 TFKD CN + Q + VVH SNLCTEI + +E AVCNLGSINL H + D+D Sbjct: 399 TFKDACNAKCNQTGRPGNVVHLSNLCTEIVEVNRDDEIAVCNLGSINLARHVRDGAVDWD 458 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +L T++ AV +LD V+DIN + +A +SN R IGLG+MG Q L +P+ S EA Sbjct: 459 RLRRTVQIAVPLLDRVVDINFYPTPEAARSNEKWRPIGLGVMGLQDVFFALRLPFDSGEA 518 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 +E++ E I A+ S ELA E G + +F + G D G+ Sbjct: 519 LELSTRIAEEIYLTALEVSAELAAEYGPHPAFPETRAAAGYLQPDLWGVTP--------- 569 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T + + +K+R+ +G+RNS +AIAPTATIA+I G +SI+P NL+ + +SG+F Sbjct: 570 -TQQERYAAIKERIAAVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRETLSGEF 628 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VN+ LVNELK R LW + + +K DGS+ + +P++++++ TA+E+ LI+ Sbjct: 629 LQVNTALVNELKTRGLWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQKALIDL 688 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+ R +IDQ+QSLNL++ P+ KL +YR AW GLKTTYYLRSR AT ++++T+ Sbjct: 689 AAARGPYIDQSQSLNLFMAAPTISKLSSMYRYAWASGLKTTYYLRSRPATRIQQATVTVT 748 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + V N ST S + CEVCQ Sbjct: 749 SS--DDVRDVMANPSTSKPATSCSLENPETCEVCQ 781 Score = 39.1 bits (89), Expect = 3.5, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMK 52 ++V KRNG D +KI RA+ + Sbjct: 1 MRVRKRNGDTEPVDVNKIVRAVER 24 >gi|115378662|ref|ZP_01465812.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella aurantiaca DW4/3-1] gi|115364328|gb|EAU63413.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella aurantiaca DW4/3-1] Length = 800 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 320/835 (38%), Positives = 475/835 (56%), Gaps = 59/835 (7%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++ +G+ + ++ V C+GL V + V ++T +YDG + +L++ I Sbjct: 1 MMRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSI 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +EP YA+++AR L +++EV F + + G Sbjct: 61 QTAAALIVEEPEYARLSARLLDTFIQKEVSNQEI----------------HSFSQSVAAG 104 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318 K L+ + ++ F + L + R+ FEY GL+ +YDRY L IE PQ Sbjct: 105 HKHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQ 164 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 FF+RVA L + A+E Y L SS ++ S+PTLFN+GTRH QLSSCFL P Sbjct: 165 DFFLRVACALTDTAKD----AIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPS 220 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I+ + AML+K+SGG+G + VR G+ I TNG S G++P+LK + + A Sbjct: 221 DELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAA 280 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV + Sbjct: 281 VNQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQ 340 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P V L DLYG+ FE AY E Q RK+ A L+ +M+ L +TG Sbjct: 341 EWSLFDPKTVPHLTDLYGEAFERAYAAAEAQGLA-----ARKVKARDLYARMMKTLAQTG 395 Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 + W+TFKD N +S Q + V+H SNLCTEI +++ ETAVCNLGS+NL ++ + Sbjct: 396 NGWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGK 455 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+++L ++ A+R LD VID+N + I A SN R +GLGLMG Q L +P+ Sbjct: 456 FDFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFD 515 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 +PEA ++ + E I F A++ S +LA++ G + +F + G D+ G++ E Sbjct: 516 APEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPEDTAR 575 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W L++R++ G+RNS +AIAPTATIA+I G + I+P NL+ + + Sbjct: 576 ----------WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETL 625 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SGDF VN +LV EL+ LW++AM S LK +GS+ ++ +P +LK I+ TA+E+ Sbjct: 626 SGDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRS 685 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LI+ A+ R +IDQ+QSLNL+++ P+ K+ +Y AW GLKTTYY+RSR AT + K+T Sbjct: 686 LIDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTT 745 Query: 916 LKGVDGKLNAVPVT----------------DPNSSTHSLGIPSSCTSDTECEVCQ 954 + G+ +V T + + S + CE CQ Sbjct: 746 VDTSHGQNASVAPNMPVASAAPAAPAPTVTAEPKYTEAEALACSLENPEMCEACQ 800 >gi|310823069|ref|YP_003955427.1| ribonucleoside-diphosphate reductase [Stigmatella aurantiaca DW4/3-1] gi|309396141|gb|ADO73600.1| Ribonucleoside-diphosphate reductase [Stigmatella aurantiaca DW4/3-1] Length = 841 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 320/835 (38%), Positives = 475/835 (56%), Gaps = 59/835 (7%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++ +G+ + ++ V C+GL V + V ++T +YDG + +L++ I Sbjct: 42 MMRVRKRNGSSEPVDLNKIVRAVGRCCAGLTRVDALRVSTKTISGLYDGATTRELDSLSI 101 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +EP YA+++AR L +++EV F + + G Sbjct: 102 QTAAALIVEEPEYARLSARLLDTFIQKEVSNQEI----------------HSFSQSVAAG 145 Query: 264 VKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318 K L+ + ++ F + L + R+ FEY GL+ +YDRY L IE PQ Sbjct: 146 HKHGLIADRLLQFVQANARKLNAAVDASRNDLFEYFGLRTVYDRYLLKNPQTREVIETPQ 205 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 FF+RVA L + A+E Y L SS ++ S+PTLFN+GTRH QLSSCFL P Sbjct: 206 DFFLRVACALTDTAKD----AIELYRLFSSLEYLPSSPTLFNAGTRHEQLSSCFLLDSPS 261 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I+ + AML+K+SGG+G + VR G+ I TNG S G++P+LK + + A Sbjct: 262 DELESIYRKYTDIAMLSKFSGGIGVAYHRVRARGSLIRSTNGHSNGIVPWLKTLDASVAA 321 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGGKRKGA C YLETWH D+E+FL+LR NTGD+ RRTH++N ANW+ DLFM+RV + Sbjct: 322 VNQGGKRKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQ 381 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P V L DLYG+ FE AY E Q RK+ A L+ +M+ L +TG Sbjct: 382 EWSLFDPKTVPHLTDLYGEAFERAYAAAEAQGLA-----ARKVKARDLYARMMKTLAQTG 436 Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 + W+TFKD N +S Q + V+H SNLCTEI +++ ETAVCNLGS+NL ++ + Sbjct: 437 NGWMTFKDISNRKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRMLSDGK 496 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+++L ++ A+R LD VID+N + I A SN R +GLGLMG Q L +P+ Sbjct: 497 FDFERLRVNVQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFD 556 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 +PEA ++ + E I F A++ S +LA++ G + +F + G D+ G++ E Sbjct: 557 APEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPEDTAR 616 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W L++R++ G+RNS +AIAPTATIA+I G + I+P NL+ + + Sbjct: 617 ----------WAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETL 666 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SGDF VN +LV EL+ LW++AM S LK +GS+ ++ +P +LK I+ TA+E+ Sbjct: 667 SGDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRS 726 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LI+ A+ R +IDQ+QSLNL+++ P+ K+ +Y AW GLKTTYY+RSR AT + K+T Sbjct: 727 LIDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKTTYYMRSRPATRITKTT 786 Query: 916 LKGVDGKLNAVPVT----------------DPNSSTHSLGIPSSCTSDTECEVCQ 954 + G+ +V T + + S + CE CQ Sbjct: 787 VDTSHGQNASVAPNMPVASAAPAAPAPTVTAEPKYTEAEALACSLENPEMCEACQ 841 Score = 43.7 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52 + + S + ++V KRNG D +KI RA+ + Sbjct: 18 TPMKSPATPPLAMSAVTASEQGPTMMRVRKRNGSSEPVDLNKIVRAVGR 66 >gi|261334781|emb|CBH17775.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma brucei gambiense DAL972] Length = 838 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 283/801 (35%), Positives = 424/801 (52%), Gaps = 29/801 (3%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204 + DG++ ++ K + + SG+ + + + +G+S S L+ L Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y + R + L + +V + L+ Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDS--------FRVLHEHVSQATKRHAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319 + + L + YERDF FEY G + L Y L ++ R +E PQ Sbjct: 120 LISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVDKGRGVMEVVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 F+RVA+G+ ++ E+ E Y+ +S F +TPTLFN+GT PQ+SSCFL + D Sbjct: 180 MFLRVALGIHGEDLERV---KETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH D+ FL L+KNTG + +R D+ WIPDLFM+RV + Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D YG+EF YE YER E + R I A LW +L ETG Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYER-----EGRGVRTIQAQELWFLILESQVETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P++ +KD CN +S Q+++G + SNLCTEI +S +E AVCNL SI L + FD Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y L + R L+ VID N + + +A+ SN HR +G+G+ G A LL +P+A P Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHP 531 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I F A+ AS ELA++ G Y +FKGS +G D +R Sbjct: 532 EAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591 Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + WD LK+RV +GMRNS +A PTA+ + I G ++ I+P N+YV+ Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRV 651 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN LV EL + LW++ M + +GS+ I+ IP+ +++++ +EI Sbjct: 652 LSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 LI+ A+ R ++IDQ+QSLNL+L P+ +L ++ +W GLKT YYLRS+ A K Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771 Query: 914 STLKGVDGKLNAVPVTDPNSS 934 TL K P Sbjct: 772 FTLDPKAMKELPKPDKQSKEE 792 >gi|302793891|ref|XP_002978710.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii] gi|300153519|gb|EFJ20157.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii] Length = 786 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 267/787 (33%), Positives = 426/787 (54%), Gaps = 45/787 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ L IV + +Y G++ S L+ Sbjct: 1 MYVIKRDGKQEAVHFDKITARLKKLSYSLNPDYCDPVIVAQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ P+YA + AR ++ L ++ + + ++ H + + I Sbjct: 61 AETAASMTTSHPDYAILAARIVVSNLHKKTKKSFSETVKEMYSHVDERSGLK--APLIAN 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 V ++ + L +++ Y+RDF ++Y G + L Y L +NG +E PQ M Sbjct: 119 DVYDIIM------KNAAKLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGRVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RV++G+ E + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + D + Sbjct: 173 RVSVGIH---KEDIEAAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLLCMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R ++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGLSVHNIRATNSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G ++ DV ++LDL+KN G + R D+ WIPDLFM+RV N+ W+L Sbjct: 290 GGKRK-----------DVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWSL 338 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P+E L D +G+EFE Y YER E + R +SA LW +L ETG+P++ Sbjct: 339 FCPNEAPGLADCWGEEFESLYTRYER-----EGRAKRSLSAQKLWFAILESQMETGNPYM 393 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD-- 619 FKD CN +S QQ++G + SNLCTEI +S ETAVCNL SI L + + Sbjct: 394 VFKDTCNRKSNQQNLGTIKCSNLCTEIVEYTSPSETAVCNLASIALPRFVREQGINSETK 453 Query: 620 --KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 L+ +IDIN + ++ AK+SN HR IG+G+ G A LL +P+ S Sbjct: 454 LVDCFQVTTVVTENLNKIIDINYYPVDTAKRSNLRHRPIGIGVQGLADAFILLGLPFDSE 513 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I +HA+ S LA+ G Y ++ GS +GVF D ++ Sbjct: 514 EARDLNKDIFETIYYHAMKTSSVLAELYGVYETYPGSPVSKGVFQPDMWNVIP------- 566 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + R W LK+ V G+RNS +A PTA+ + I G ++ +P N+Y + +SG Sbjct: 567 ---SGRWDWPALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSG 623 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F VVN L+N+L +W + + + ++GSI +IE IPDDLK+I+ T +EI ++ Sbjct: 624 EFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWEIKQRTIV 683 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + A R +IDQ+QSLN+++++P+ KL ++ AW GLKT YYLRS++A K T+ Sbjct: 684 DMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTV 743 Query: 917 KGVDGKL 923 K+ Sbjct: 744 DTASLKV 750 >gi|2244677|emb|CAA67423.1| ribonucleotide reductase [Spodoptera littoralis NPV] Length = 781 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 257/778 (33%), Positives = 425/778 (54%), Gaps = 32/778 (4%) Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 DG + ++++ +E+ C GL V+ + + +Y G++ +L+ + ++ Sbjct: 4 KRDGRKEDVSVRKIKYRIEKQCYGLDMYFVNPASLTRRVVQGIYPGVTTVELDNLIAETA 63 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 ++ +Y+ + AR + L +E + + + +Y + Sbjct: 64 ASMTIDHSDYSLLAARLAVSNLHKET--------KDLFFNVIVDMYEAIDQKTGAATPMI 115 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 H ++ + L + + ++RDF ++Y G + + Y ING +E PQ MRVA+ Sbjct: 116 SDFHYGIIAANADRLNSAIMHDRDFNYDYFGFKTMQRSYLFKINGITVERPQYMMMRVAI 175 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFG 385 G+ ++ A+E YNL+S+ +F ++PTLF++ T Q+SSCFL + D + GI+ Sbjct: 176 GIHGRD---IDAAIETYNLMSNGYFTHASPTLFSAATPKAQMSSCFLVAIKEDSIEGIYD 232 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 L++ AM++K GG+G VR G+ + G +G + G++P L+V N+TA VNQG KR Sbjct: 233 TLKQCAMISKSGGGIGFHVHNVRAKGSSVAGVDGAANGLVPMLRVYNNTARYVNQGGNKR 292 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 GA Y+E WH DV +FLDL+KNTG + R ++ A WIPDLFM+RV +A W+L P Sbjct: 293 PGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMCP 352 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + L + EFE YE YE+Q + +++SA LWR ++ ETG P++ +K Sbjct: 353 MQSPGLAIVTVFEFEALYEKYEKQ-----GRYVKRVSAQTLWRAIIEAQVETGTPYMLYK 407 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622 D CN +S Q ++G + SNLCTEI +S +E AVCNL SI + A +D+++L Sbjct: 408 DSCNRKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLK 467 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++ R L+ +ID N + +A++SN +R IG+G+ G A + +P+ S A E+ Sbjct: 468 EITKSCDRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPFESDAAAEL 527 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I + A+ A+ ELA + G Y ++KGS +G D ++ Sbjct: 528 NKKIFETIFYGALEANCELAAKDGPYETYKGSPASRGELQYDMWN---------GATPSN 578 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W LK ++ G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VV Sbjct: 579 LWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVV 638 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LV +L LW++ M + + Y++GS+ NIE IP ++++++ T +E+ +I A+ Sbjct: 639 NRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAAD 698 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 R +IDQ+QS N+Y+ EPS KL I+ AW MGLKT YYLR++ A + + T+ Sbjct: 699 RGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNSIQFTVDKN 756 >gi|225873705|ref|YP_002755164.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225791715|gb|ACO31805.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 792 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 331/826 (40%), Positives = 478/826 (57%), Gaps = 57/826 (6%) Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P + + +G L + ++ V+ +GL V + V S+T +YDG + Sbjct: 16 PAKEEIPVMHVRKRNGELEPVDVNKIVRAVQRCSAGLSQVDAIRVASKTIGGLYDGATTR 75 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L+ I ++ +LI +EP Y+K+ AR LL + +EV F Sbjct: 76 ELDAISIDTAASLIAEEPQYSKLAARLLLGTILKEVAGQNL----------------HSF 119 Query: 257 CRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--G 311 + IE + +++ + +F L + + FE+ GL+ +YDRY L Sbjct: 120 SQSIEYAHQEGVVNAATAEFVRTHARKLNYAIDEQLSDRFEFFGLRTVYDRYLLRDPLSR 179 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 IE PQ FF+RVA GLA A+EFY L++S +M S+PTLFNSGT+HPQ+SSC Sbjct: 180 KVIETPQYFFLRVACGLAGTP----HEAIEFYRLIASHDYMPSSPTLFNSGTKHPQMSSC 235 Query: 372 F-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 + + D L I+ ++ A+L+K+SGG+G + VR G+ I TNG S G++P+L+ Sbjct: 236 YLHDSPSDSLESIYDTYKDVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRT 295 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + + AVNQGGKRKGA C YLE WH DVE+FL+LR+NTGD RRT+++N ANWIPDLFM Sbjct: 296 LDSSVAAVNQGGKRKGACCVYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFM 355 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV ++ W+LF P V L DLYG EF+ AYE E E R+I A L+ +M+ Sbjct: 356 RRVEEDGMWSLFDPKVVPQLPDLYGVEFDAAYEKAEA-----EQLYARQIKARDLYARMM 410 Query: 551 TMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 L ETG+ W+TFKD CN++ Q + VVH SNLCTEIT +S +ETAVCNLGSINL Sbjct: 411 RSLAETGNGWMTFKDACNLKCNQTGKPGNVVHLSNLCTEITEVTSRDETAVCNLGSINLA 470 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H AN FD++KLA T+R AV +LD VIDIN + + +A +N R +GLGLMG Q Sbjct: 471 RHVANGAFDFEKLAETVRVAVPMLDRVIDINYYPVHQAASANSRWRPVGLGLMGLQDVFF 530 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +P+ SPEA +++ E I +HA++AS ELA+++GA+ +F + G D G+ Sbjct: 531 QLRMPFDSPEAQQLSTHIQEEIYYHALAASCELAEKQGAHPAFAETRLAAGQLQFDLWGV 590 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 W+ L+ R++ G+RNS +AIAPTATIA+I G + +P N Sbjct: 591 KPADEAR----------WNTLRARIQQHGVRNSLLIAIAPTATIASIVGCYECTEPQVSN 640 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L+ + +SG+F VN +LV +LK+R LW+E + LK +GS+ I+ IPDDLK+I+ T Sbjct: 641 LFKRETLSGEFLQVNRYLVTDLKERGLWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTV 700 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 +E+ +I+ A R +IDQ+QSLNL+ + P+ +L +Y AW GLKTTYYLRSR A Sbjct: 701 WELPMRAIIDLARERSPFIDQSQSLNLFAESPNIGRLSSMYMYAWKSGLKTTYYLRSRPA 760 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 T + K+T+ ++ + + S + CE CQ Sbjct: 761 TRIAKTTV--------------ASAKNATAAVACSLENPGSCEACQ 792 Score = 41.8 bits (96), Expect = 0.68, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52 +P E+I + V KRNG + D +KI RA+ + Sbjct: 14 GFPAKEEIPVMHVRKRNGELEPVDVNKIVRAVQR 47 >gi|163801386|ref|ZP_02195285.1| hypothetical protein 1103602000598_AND4_10974 [Vibrio sp. AND4] gi|159174875|gb|EDP59675.1| hypothetical protein AND4_10974 [Vibrio sp. AND4] Length = 752 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 280/812 (34%), Positives = 437/812 (53%), Gaps = 65/812 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ DG + ++ E GL+ V V +YDG+ ++++ L Sbjct: 1 MDVIKRDGRKEKASLDKVTRRAEMLADGLK-VEPIAVAQRVVSGLYDGIKATEIDVFLAE 59 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ +L + P+YAK+ AR ++ L++E + + + Y + R Sbjct: 60 TAASLATEHPDYAKLAARVMVSSLQKETNGYAAATSELSEIGILSDAYVNFVARNQLA-- 117 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 L + + Y+RD+ F+Y G + L Y L + G+ +E PQ FMRV Sbjct: 118 ----------------LEDMIDYKRDYQFDYFGYKTLERSYLLKVKGAVVERPQDMFMRV 161 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383 A+ +A + + E Y+LLS ++ +TPTLFN+G + QLSSCFL + D + GI Sbjct: 162 AVVVAGDD---LEEIRELYDLLSLGYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSIDGI 218 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 + L++ A+++K +GG+G +R GA I GTNG S G+IP LKV N+TA V+QGG Sbjct: 219 YDTLKDCALISKSAGGIGLHIHNIRATGAPIIGTNGVSNGIIPMLKVFNETARYVDQGGG 278 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKG+ YLE WH D+E FLDLRKN G + R D+ A W+PDLFM+RV +A WTLF Sbjct: 279 KRKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMQRVENDAEWTLF 338 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP DL +LYG EF Y+ YER + I A L K++ ETG P++ Sbjct: 339 SPHNTKDLSELYGSEFNRKYQEYERIGL-----GVKTIKARQLMTKIIESQTETGTPYML 393 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD CN +S Q+++G + SSNLC EI S+ +ETA CNL S+ L + FD++KL Sbjct: 394 YKDACNEKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASVALPKFVTDTGFDFEKLH 453 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + A++ LD VID+N H K +KSNH HR +GLG+ G +H+P+ S EA+ + Sbjct: 454 QVTKVAIKNLDRVIDVNYHPTNKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSKEALHL 513 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E + ++ AS E+A+++G YSS+ GS QG+F D G +S Sbjct: 514 NRDIAETMYHASLEASCEIAKQKGTYSSYDGSPISQGLFQFDLWGKQP----------SS 563 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 R W +LK ++ G+RNS +A PTA+ A I G +++ + NLY + +SG+F ++ Sbjct: 564 RWDWSQLKLKIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNLYKRQTLSGEFIIL 623 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N LV +L++ LW + + ++GS+ I+ IPDDL+ ++ T +EI +I+ ++ Sbjct: 624 NKHLVRDLEKNGLWTSKIRDAILLNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAE 683 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921 R ++ Q+QSLNL+L P+ +++ ++ AW GLKT YYLRS+ + + K T+ Sbjct: 684 RAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSANAVKVTVGQQ-- 741 Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + D +C C Sbjct: 742 -----------------------SEDEDCLNC 750 >gi|71755889|ref|XP_828859.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma brucei] gi|70834245|gb|EAN79747.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma brucei] Length = 838 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 282/801 (35%), Positives = 423/801 (52%), Gaps = 29/801 (3%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204 + DG++ ++ K + + SG+ + + + +G+S S L+ L Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y + R + L + +V + L+ Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDS--------FRVLHEHVSQATRRHAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319 + + L + YERDF FEY G + L Y L ++ R +E PQ Sbjct: 120 LISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVDKGRGVMEVVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 F+RVA+G+ ++ E+ E Y+ +S F +TPTLFN+GT PQ+SSCFL + D Sbjct: 180 MFLRVALGIHGEDLERV---KETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH D+ FL L+KNTG + +R D+ WIPDLFM+RV + Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D YG+EF YE YER E + R I A LW +L ETG Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYER-----EGRGVRTIQAQELWFLILESQVETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P++ +KD CN +S Q+++G + SNLCTEI +S +E AVCNL SI L + FD Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y L + R L+ VID N + + +A+ SN HR +G+G+ G LL +P+A P Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVREARYSNLRHRPVGIGVQGLADTFALLSLPFAHP 531 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I F A+ AS ELA++ G Y +FKGS +G D +R Sbjct: 532 EAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591 Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + WD LK+RV +GMRNS +A PTA+ + I G ++ I+P N+YV+ Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLVAPMPTASTSQILGNNECIEPFTSNIYVRRV 651 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN LV EL + LW++ M + +GS+ I+ IP+ +++++ +EI Sbjct: 652 LSGEFPVVNKHLVKELIRLQLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 LI+ A+ R ++IDQ+QSLNL+L P+ +L ++ +W GLKT YYLRS+ A K Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLGTPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771 Query: 914 STLKGVDGKLNAVPVTDPNSS 934 TL K P Sbjct: 772 FTLDPKAMKELPKPDKQSKEE 792 >gi|42523461|ref|NP_968841.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio bacteriovorus HD100] gi|39575667|emb|CAE79834.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio bacteriovorus HD100] Length = 801 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 328/834 (39%), Positives = 482/834 (57%), Gaps = 53/834 (6%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 A +++ DGTL + ++ V + C GL V V ++ +YDG S +L Sbjct: 3 ETTAHIMRVKKRDGTLEPVDVTKIVERVTKNCQGLTQVDPLRVATKAISGLYDGASTKEL 62 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + I ++ LI ++P Y+++ AR L + EV + + F Sbjct: 63 DNLCIQTASLLIGEDPEYSRLAARLLSTYIDEEVRSQKI----------------QSFAD 106 Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313 + G +A LL E F + L ++ R FEY GL+ +YDRY L +R Sbjct: 107 SVSFGYQAGLLAEHTYKFVETNKAALCAAIEPYRTDRFEYFGLRTVYDRYLLKNPTTRQV 166 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E PQ FFMRVA GLA + A+EFY L+SS +M STPTLFNSGT PQ+SSC+L Sbjct: 167 FETPQYFFMRVACGLAQS----VEEAIEFYRLISSHDYMPSTPTLFNSGTMRPQMSSCYL 222 Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P DDL I+ + A+L+K++GG+G ++ VR G+ I GTNG S G+IP+LK + Sbjct: 223 LDSPSDDLSAIYQKYTDIALLSKFAGGIGVAYSRVRSRGSLIKGTNGHSNGIIPWLKTMD 282 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + AVNQGGKRKGA C YLETWH D+EEFL+LR NTGD+ +R H++N ANW+PDLFMKR Sbjct: 283 SSVAAVNQGGKRKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKR 342 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +A W+LF P V D YG+EFE AY E + +++ A L+ +M+ Sbjct: 343 VEADAMWSLFDPKVVPHFVDTYGEEFEKAYVEAEE-----KKLYIKQLKARDLYSRMMKT 397 Query: 553 LFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 L +TG+ W+TFKD N+++ Q V+H SNLCTEI +S +ETAVCNLGS+NL H Sbjct: 398 LAQTGNGWMTFKDHANLKANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLARH 457 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N QF+++KLA ++RTAV+ LD V+DIN + I A+ SNH R +GLG+MG Q AL L+ Sbjct: 458 VENGQFNFEKLARSVRTAVKYLDRVVDINFYPIPTAQDSNHKWRPVGLGVMGLQDALFLM 517 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +P+ S A +++ + E I ++A+ S EL+++ G + +F+ + +G+ D G+ Sbjct: 518 KLPFDSAAARDLSAKVQEEIYYNALVTSCELSEKHGPHGAFEQTKAAKGLLQYDLWGVTP 577 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + +LK+++K G+RNS +AIAPTATIA+I G ++I+P NL+ Sbjct: 578 SQPERFE----------KLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLF 627 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F +N +LV++LK +W E + +++K DGSI ++ IP +K+++ T +E Sbjct: 628 KRETLSGEFMQINKYLVSDLKAMGIWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWE 687 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 I L++ A+ R +IDQAQSLNL+ + P+ KL +Y AW G+KTTYYLRSR AT Sbjct: 688 IPMKSLVDMAADRGAYIDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKTTYYLRSRPATK 747 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG----------IPSSCTSDTECEVCQ 954 + K+T+K N + + I S + CE CQ Sbjct: 748 IAKTTVKASSNSANPTASESMMDAAPAQEAKKSYSDAEVIACSLENPEACEACQ 801 >gi|147775539|emb|CAN71697.1| hypothetical protein VITISV_003192 [Vitis vinifera] Length = 791 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 284/834 (34%), Positives = 434/834 (52%), Gaps = 70/834 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG S + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQESVHFDKITARLKKLSYGLSIDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR ++ L + +K+ ++ +Y + R + Sbjct: 61 AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKEMYNHFNERSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L +++ Y+RDF ++Y G + L Y L I G +E PQ M Sbjct: 113 APLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKIQGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + A++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KDDIDSAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E L D +G+EF Y YER E K + + A LW ++L ETG P+ Sbjct: 350 LFCPXEAPGLADCWGQEFVDLYTQYER-----EGKAKKVVQAQNLWFEVLKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD CN +S QQ++G + SSNLCTEI +S++ETAVCNL SI L + Sbjct: 405 MLFKDSCNKKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVPMES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA L+ +ID+N + Sbjct: 465 NPSKLVGSRGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYP-----------------F 507 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G LL + + SPEA ++ + E I +HA+ AS ELA G Y ++ G +G+ Sbjct: 508 QGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVSKGI 567 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ +SR WD L+K + G+RNS +A PTA+ + I G ++ Sbjct: 568 LQPDMWGVTP----------SSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNE 617 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW + + + Y +GS+ + IP+D Sbjct: 618 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPED 677 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT- 899 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT Sbjct: 678 LKVIYRTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTG 737 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YYLRSR+A K T+ L T + T + S T+ EC C Sbjct: 738 MYYLRSRAAADAIKFTVDTS--ILQERTKTADDDDTKMAQMVCSLTNREECMAC 789 >gi|3914639|sp|O15909|RIR1_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase R1 subunit gi|2411477|gb|AAB70704.1| ribonucleotide reductase large subunit [Trypanosoma brucei] Length = 838 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 282/801 (35%), Positives = 423/801 (52%), Gaps = 29/801 (3%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALIF 204 + DG++ ++ K + + SG+ + + + +G+S S L+ L Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y + R + L + +V + L+ Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDS--------FRVLHEHVSQATKRHAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMPQA 319 + + L + YERDF FEY G + L Y L ++ R +E PQ Sbjct: 120 LISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 F+RVA+G+ ++ E+ E Y+ +S F +TPTLFN+GT PQ+SSCFL + D Sbjct: 180 MFLRVALGIHGEDLERV---KETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMRED 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L++ A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH D+ FL L+KNTG + +R D+ WIPDLFM+RV + Sbjct: 297 DQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D YG+EF YE YER E + R I A LW +L ETG Sbjct: 357 TWTLMDPNTAPFLSDCYGQEFTDLYERYER-----EGRGVRTIQAQELWFLILESQVETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P++ +KD CN +S Q+++G + SNLCTEI +S +E AVCNL SI L + FD Sbjct: 412 VPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y L + R L+ VID N + + +A+ SN HR +G+G+ G A LL +P+A P Sbjct: 472 YVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHP 531 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA ++ + E I A+ AS ELA++ G Y +FKGS +G D +R Sbjct: 532 EAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNE 591 Query: 738 ---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + WD LK+RV +GMRNS +A PTA+ + I G ++ I+P N+YV+ Sbjct: 592 DSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRV 651 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN LV EL + LW++ M + +GS+ I+ IP+ +++++ +EI Sbjct: 652 LSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQK 711 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 LI+ A+ R ++IDQ+QSLNL+L P+ +L ++ +W GLKT YYLRS+ A K Sbjct: 712 DLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIK 771 Query: 914 STLKGVDGKLNAVPVTDPNSS 934 TL K P Sbjct: 772 FTLDPKAMKELPKPDKQSKEE 792 >gi|154340341|ref|XP_001566127.1| ribonucleoside-diphosphate reductase large chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063446|emb|CAM39626.1| putative ribonucleoside-diphosphate reductase large chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 799 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 286/819 (34%), Positives = 435/819 (53%), Gaps = 41/819 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204 I+ +G ++++ ++ E GL + ++ + + D + L+ + Sbjct: 8 IIKRNGEAQTYDASKIRRRFERVMEGLDSDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y ++ R L ++ ++ + + L+ + Sbjct: 68 TAAYSVTKHPDYGRMGGRLCTTSLHKQTSESLLET--------FRLLHDHVTVQTHRPAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319 +M L + + Y RD FE+ G + L Y L I +E PQ Sbjct: 120 LVADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FMRVA+G+ ++ E YNL+S F +TPTLFN+GT PQ+SSCFL DD Sbjct: 180 MFMRVALGIHGRDLNNV---RETYNLMSMGFFTHATPTLFNAGTPKPQMSSCFLVASKDD 236 Query: 380 -LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH DV FL L++NTG D +R D+ A WIPDLFMKRV Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMKRVKSEG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D +G+ FE YE YE E + + I A +W +L ETG Sbjct: 357 RWTLMDPNTCPGLSDCHGEAFERLYERYEA-----EGRGVKTIQAQEVWFAILESQIETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615 P+I +KD CN +S Q+++G + SNLCTEI +S EETAVCNL SI L + Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPEETAVCNLASIALPRFVDVEKRE 471 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++ L + + R L+ VID N + +E A++SN +R IGLG+ G L+ +P+ Sbjct: 472 FNHQLLYAVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADTFILMRLPFV 531 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + E E I F A+ +S+ELA+E G Y +FKGS +G+ D Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKN------- 584 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A + R W LK++V +G+RNS ++ PTA+ + I G ++ +P N+YV+ + Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGIRNSLLVSPMPTASTSQILGNNECFEPFTSNIYVRRVL 643 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +LV +L R LW+E M +++ ++GSI NI+ IPDDLK+++ T +EI Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNEQMRNEIISYNGSILNIDGIPDDLKELYRTVWEIPQRK 703 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A R ++IDQ+QSLNL+L P+ ++ + W GLKT YYLR+++A K Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYGWEAGLKTGVYYLRTKAAADAIKF 763 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ K + + SS ++ + EC C Sbjct: 764 TVDAKRLK----EIQERESSQQTMSSHRV-SQPEECLNC 797 >gi|313844113|ref|YP_004061776.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1] gi|312599498|gb|ADQ91520.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1] Length = 747 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 275/780 (35%), Positives = 418/780 (53%), Gaps = 44/780 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALI 203 ++++ G + + ++ GL + S V + ++YDG++ +++T Sbjct: 1 MRVVKRSGRIEDMKFDNITNRIKNLTYGLSEKCDSSKVAQQVASSLYDGITAQEIDTLSA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +I +P+Y + R +++ + +K + + + Sbjct: 61 EICVGMITSDPDYETLATRITASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAGRVRDD 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + +RD+ F Y GL+ L Y ++G +E PQ FMR Sbjct: 121 ---------------------IDTKRDYDFGYFGLKTLEKSYLQRLDGVLMETPQYMFMR 159 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382 VA+G+ E +E Y+ +S F+ +TPTLFN+GT PQ+SSCFL D + G Sbjct: 160 VAIGIHG---EDIDSVLETYDKMSRGMFIHATPTLFNAGTPRPQMSSCFLIANKEDSING 216 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+G L E A ++K++GG+G VR + I GTNG+S G+IP L+V N TA VNQ G Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKG++ YLE WH D+ EFL+LR N GD+ R D+ +A WIPDLFMKRV ++ W+LF Sbjct: 277 RRKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEESGNWSLF 336 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 PD+ L D G+EFE Y YE E + + A +W+ +L ETG P++ Sbjct: 337 CPDKAPGLSDAVGEEFEALYTKYEE-----ESRATATVPAADVWKAILKSQTETGTPYML 391 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620 +KD CN +S Q+++GV+ SSNLCTEI + +ETAVCNL SI L + FDY+K Sbjct: 392 YKDACNQKSNQKNLGVIKSSNLCTEILEFTDKDETAVCNLASIALPKYVDPETKTFDYEK 451 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L +T + L+ VID N + +E A+KSN HR IGLG+ G L + S EA Sbjct: 452 LHEVTKTVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRHAFDSDEAK 511 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 EI E + A+ AS ELA+ G Y +F+GS QGV D + Sbjct: 512 EINARIFETMYHAALEASSELAEVDGPYETFEGSPASQGVLQFDMWEGETK--------- 562 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 WD LK+R+K G+RNS MA PTA+ A I G ++ +P N+Y++ ++G+F Sbjct: 563 -LHYDWDALKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN LV++LK+ LW + M + GSI NI IPD++KK++ T +EI +I+ A Sbjct: 622 IVNKHLVDDLKEIGLWSKDMKDLMVKAGGSIQNIVDIPDEIKKLYRTVWEIKMKDVIDMA 681 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R ++IDQ+QS+NL+++ P+ KL ++ +W GLKT YYLRS++ + +L+ Sbjct: 682 ADRGRFIDQSQSMNLFMESPTMSKLSSMHMYSWKKGLKTGMYYLRSKAKARPIQFSLEPE 741 >gi|330467633|ref|YP_004405376.1| ribonucleoside-diphosphate reductase subunit alpha [Verrucosispora maris AB-18-032] gi|328810604|gb|AEB44776.1| ribonucleoside-diphosphate reductase, alpha subunit [Verrucosispora maris AB-18-032] Length = 791 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 313/827 (37%), Positives = 456/827 (55%), Gaps = 45/827 (5%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +++ +G + ++ VE + L ++ V ++T +YDG Sbjct: 5 RAQAGPEQRRHVMQVRKRNGDTEPVDVNKIVKAVERWVTDLDEIDPLRVATKTISGLYDG 64 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + ++L+ I ++ LI +EP Y+++ AR L + +EV + Y Sbjct: 65 ATTAELDKLSIQTAAELIGEEPQYSRLAARLLAAFVDKEVRGQ------QVASFSQSIRY 118 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + + + L + + D FEY GL+ + DRY L + Sbjct: 119 AHGLGLI-------GDATAAFVARNARKLDDAVDPAGDLRFEYFGLRTVADRYLLRHPQT 171 Query: 313 R--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 R +E PQ + +RVA GL+ E A+ FY L+SS ++ S+PTLFNSGTRH Q+SS Sbjct: 172 RQVVETPQYWLLRVACGLSQTPGE----AIGFYRLMSSLAYLPSSPTLFNSGTRHTQMSS 227 Query: 371 CFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL P D+L I+ + A L+K+SGG+G WT VRG GA I GTNG+S G++PFLK Sbjct: 228 CFLVDSPRDELDSIYERYHQVAKLSKFSGGIGISWTRVRGRGALIRGTNGRSNGIVPFLK 287 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + AVNQGG+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANWIPD F Sbjct: 288 TLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEF 347 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+RV + W+L P + +L DLYG+ F+ AY E K R + A L+ +M Sbjct: 348 MRRVEADGDWSLIDPSDAPELPDLYGEAFDEAYR-------AAEKKAVRTVKARDLYGRM 400 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 + L +TG+ W+TFKD N S Q +H SNLCTEI ++ ETAVCNLGSINL Sbjct: 401 MRTLAQTGNGWMTFKDAANRLSNQTGAPGNTIHLSNLCTEILEVNNDTETAVCNLGSINL 460 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 AH + D++KL +T+RTAV LD VIDIN + ++A SN R +GLGLMG Q A Sbjct: 461 AAHLTADGIDWEKLRATVRTAVLFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAF 520 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L +P+ S A E++ E I A+ S +LAQ+ G + ++ + +G D G Sbjct: 521 FTLRMPFDSTPARELSSRVQEEILLTALETSAQLAQQFGPHPAYDDTRAARGELHPDLWG 580 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + T W L++ + G+RNS +AIAPTATIA+I G + I+P Sbjct: 581 A----------DLTQAQRWAALRETIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVS 630 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NL+ + MSG+F +N++LV ELK R LW ++ +K +GS+ I +P+D++++ T Sbjct: 631 NLFKRETMSGEFLQINTYLVRELKARGLWTASIREQIKRAEGSVQGIAELPEDVRQLFRT 690 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 A+E+ LI+ A+ R +IDQ+QSLNL++ P+ KL +Y AW GLKTTYYLRSR Sbjct: 691 AWELPQRALIDLAAARAPFIDQSQSLNLFISAPTIGKLSSMYLYAWKSGLKTTYYLRSRP 750 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 AT ++++T+ V V D + + S + CE CQ Sbjct: 751 ATRIQQATVAVTPAAPAIVAVGDDEA------LACSLENPESCEACQ 791 >gi|163955126|ref|YP_001648230.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5] gi|163638575|gb|ABY27934.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5] Length = 747 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 267/780 (34%), Positives = 416/780 (53%), Gaps = 44/780 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++++ G + + ++ GL ++ S V + ++YDG++ +++T Sbjct: 1 MRVVKRSGRIEDMKFDNITNRIKNLTYGLSKNCDSSKVAQQVASSLYDGIAAQEIDTLSA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +I +P+Y + R + +++ + +K + + + Sbjct: 61 EVCVGMITSDPDYEILATRIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAVRVRDD 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + +RD+ F Y GL+ L Y ++G +E PQ FMR Sbjct: 121 ---------------------IVTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 V++G+ E +E Y+ +S F+ +TPTLFN+GT PQ+SSCFL D + G Sbjct: 160 VSIGIHG---EDIPAVLETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKGDSIDG 216 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+G+L E A ++K++GG+G VR + I GTNG+S G+IP L+V N TA VNQ G Sbjct: 217 IYGSLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKG++ YLE WH D+ +FL+LR N GD+ R D+ +A WIPDLFMKRV + W+LF Sbjct: 277 RRKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLF 336 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 PD+ L + G+EFE Y YE E + + A +W+ +L ETG P++ Sbjct: 337 CPDKAPGLSEAVGEEFEALYTKYEE-----EGRANATVPAADVWKAILKSQTETGTPYML 391 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620 +KD CN +S Q+++G + SSNLCTEI + +ET+VCNL SI L + FDY+K Sbjct: 392 YKDACNTKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEK 451 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + + L+ VID N + +E A+KSN HR IGLG+ G L + + S EA Sbjct: 452 LHEITKVVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAK 511 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E + A+ AS ELA+ G Y +F+GS QG+ D + Sbjct: 512 AMNARIFETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWQGETK--------- 562 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 WD LK+R++ G+RNS MA PTA+ A I G ++ +P N+Y++ ++G+F Sbjct: 563 -LNYDWDALKERIREKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN LV +LK+ LW + M + GSI NI IPDD+K ++ T +EI +I+ A Sbjct: 622 VVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMA 681 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R ++IDQ+QS+NL+++ P+ KL ++ AW GLKT YYLRS++ + +L+ Sbjct: 682 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLEPE 741 >gi|322368526|ref|ZP_08043094.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus paucihalophilus DX253] gi|320551810|gb|EFW93456.1| ribonucleoside-diphosphate reductase, alpha subunit [Haladaptatus paucihalophilus DX253] Length = 815 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 384/819 (46%), Positives = 523/819 (63%), Gaps = 23/819 (2%) Query: 153 TLISFNSKRLEMIVEEACSG----LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + + I++ A +G + + + SE + +YDG S ++ A+ + Sbjct: 3 QRTPTTTIDVRSILDRARTGYETAFPEDECETLASEIERTLYDGASTDEVYQAVTQAFSA 62 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +E+EP + ++ A + EV+ + +E+ Y F +E V+ Sbjct: 63 RVEREPAFKRIAAAAFRQGYYHEVIG------ENLRGYELDREYRATFIENLERAVEIGR 116 Query: 269 LHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVA 325 L E + + FDL LA+ L+ +RD FEY+ ++ L RYFL NG R+E+PQAF+MRVA Sbjct: 117 LDERLPERFDLDDLASYLEPDRDERFEYMAMETLAQRYFLKTEENGERLELPQAFWMRVA 176 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 MGLA++E + ++RA EFY++LS F STPTLF+SG+ HPQLSSC+LTTV DDL IF Sbjct: 177 MGLAVEEDDPQRRAKEFYDVLSKLEFTPSTPTLFHSGSTHPQLSSCYLTTVSDDLEHIFD 236 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + +A L+K+SGGLGNDWT +R GA I T +S GV+PFL+++ND A+N+ GKR+ Sbjct: 237 SYNHHAHLSKWSGGLGNDWTNLRASGALIESTGVESTGVVPFLRISNDVTAAINRSGKRR 296 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA CAYL WH+D F+DL++NTGD+RRRT DMNTA WIPDLFMKRV WTLFSPD Sbjct: 297 GAACAYLACWHLDFPAFIDLKRNTGDERRRTPDMNTAAWIPDLFMKRVEAGEEWTLFSPD 356 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 EV DLHDL G+ F Y YE+QA+ GE + + ++ A LWRK LT LFETGHPW+TFKD Sbjct: 357 EVPDLHDLSGEAFAEKYREYEKQAEAGEFRQYERVDAEELWRKTLTRLFETGHPWLTFKD 416 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 PCN+RSPQ H G VHSSNLCTEITLN+S +E AVCNLGS+N H + + ++D LA TI Sbjct: 417 PCNVRSPQDHAGTVHSSNLCTEITLNTSEDEHAVCNLGSVNFATHVSGGELNHDHLAETI 476 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 TA+R+LDNV+D+ + ++A+ SN HR +GLG MGF AL L IP S +A+E A+ Sbjct: 477 ETAMRMLDNVVDLCFYPTDEAEHSNMQHRPVGLGTMGFHDALMELGIPMDSEDAIEKANR 536 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRL 744 EF+S+HAI S +LA ERG Y S++GS WD+G+ P D++ L R E+ R L Sbjct: 537 WQEFVSYHAIHNSSKLAAERGTYPSYEGSKWDRGMLPQDTVDTLEAERGREIPTEREETL 596 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W +++ V+ GMRNSN MAIAPTAT++ I G + SI+P Y NLYVKSNMSG+FTVVN Sbjct: 597 DWYVVREHVEEHGMRNSNTMAIAPTATVSTINGTTPSIEPMYSNLYVKSNMSGEFTVVND 656 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 LV++LK +LWDE M+ +KYHDG+I I+ +PDDLK+++ AFEIDP + + RQ Sbjct: 657 HLVDDLKALELWDEEMVDRIKYHDGTIQEIDAVPDDLKELYRGAFEIDPRHQLRLTAHRQ 716 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG--- 921 WIDQ+ S N++ G LD +Y+ AW +GLKTTYYLR+ A+ +EKSTL + Sbjct: 717 TWIDQSVSHNVFFPSTDGTLLDDVYKTAWRLGLKTTYYLRTLGASGIEKSTLDMAEYGKS 776 Query: 922 ------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ++ D C+ CQ Sbjct: 777 QHRDGFGTDPDDDGSGDADDGDGETDLCTVEDPTCDACQ 815 >gi|15791174|ref|NP_280998.1| ribonucleotide-diphosphate reductase alpha subunit [Halobacterium sp. NRC-1] gi|169236930|ref|YP_001690130.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium salinarum R1] gi|10581792|gb|AAG20478.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1] gi|167727996|emb|CAP14784.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium salinarum R1] Length = 804 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 383/797 (48%), Positives = 519/797 (65%), Gaps = 12/797 (1%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L+ + + + + +L+E +N YD + + AL+ + I++ P Y V Sbjct: 16 LDRALTDHEDDIDSDARDRILTEATRNAYDDATTDERYDALLGALTGRIDRHPAYKTVAG 75 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R + + F I+ G+ A LL E M D+DL L Sbjct: 76 -------RVLRERLERRLVDDYDPATRDAATRQAFRDGIQRGLDADLLDERMGDYDLNRL 128 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKR 338 A+ + RD +Y+ + L RYFL + E+PQ F+MRVAMG+AL+E +E+ Sbjct: 129 ADAITPARDDRLDYMAMDTLRQRYFLREPDADPFELPQPFWMRVAMGVALREDPADREEY 188 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A+EFY+ LS+ F+ STPTLF++GT H QLSSC+LTTVPDDL GIF A +E+A L+K+SG Sbjct: 189 AIEFYDALSTLRFVHSTPTLFHAGTTHAQLSSCYLTTVPDDLDGIFDAYKEHAKLSKWSG 248 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 GLGNDWTP+R G+ I T +S G +PFLK++ND A+N+ GKR+GA AYL WH+D Sbjct: 249 GLGNDWTPLRAAGSLIESTGVESTGTVPFLKISNDVTAAINRSGKRRGAAAAYLACWHLD 308 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 F DLR+NTGD+RRRTHDMNTA WIPDLFM+RV + WTLFSP E DL++LYG +F Sbjct: 309 FPAFCDLRRNTGDERRRTHDMNTAAWIPDLFMERVRADKQWTLFSPKETGDLYELYGSDF 368 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 Y YE AD G+I+ F ++ A LWR MLT LFETGHPW+TFKDPCN+RSPQ H G Sbjct: 369 AERYREYEAMADDGDIQRFERVDATDLWRTMLTRLFETGHPWLTFKDPCNVRSPQDHAGT 428 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 V SSNLCTEITLN+S EETAVCNLGS+NL H + D ++L+ T+ TA+R+LDNV+D+ Sbjct: 429 VRSSNLCTEITLNTSEEETAVCNLGSVNLARHLDDGDIDREQLSETVETAMRMLDNVVDL 488 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + E A++SN HR +GLG+MGF AL + +P AS +A++ AD E++++HAI AS Sbjct: 489 NFYPTENAERSNMRHRPVGLGVMGFHDALQQMRVPMASDDALDRADALQEYVAYHAIGAS 548 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIG 757 +LA ERG Y S++GS WD+ VFP D++ L R E+ + R RL W ++++RV T G Sbjct: 549 ADLAAERGTYESYEGSKWDRDVFPQDTVDRLESERGREIPVPREERLDWSDVRQRVATHG 608 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRNSN MA+APTATI+ I G + SI+P Y NLYVKSNMSGDFTVVN LV +L++RDLW Sbjct: 609 MRNSNTMAVAPTATISTIAGTTPSIEPVYSNLYVKSNMSGDFTVVNDRLVADLEERDLWT 668 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E + L YHDGS+ ++ +P+D+++++ TAFEIDP + A+RR WIDQ+QS+N++ Sbjct: 669 EELRDKLTYHDGSVQELDAVPEDVQELYRTAFEIDPRHQLRLAARRGVWIDQSQSVNVFF 728 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 E G KL +Y+ AW +GLKTTYYLR+ A+ +EK+TL +D + D + Sbjct: 729 PETDGSKLSEVYQTAWELGLKTTYYLRTLGASQIEKTTLD-MDEYDDTQFRGDDDGEDAD 787 Query: 938 LGIPSSCTSDTECEVCQ 954 D CEVCQ Sbjct: 788 GDGDLPSVEDPTCEVCQ 804 >gi|290343605|ref|YP_003494972.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1] gi|260161020|emb|CAY39721.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1] Length = 747 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 266/780 (34%), Positives = 418/780 (53%), Gaps = 44/780 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++++ G + + ++ GL ++ S V + ++YDG++ +++T Sbjct: 1 MRVVKRSGRIEDMKFDNITNRIKNLTYGLSKNCDSSKVAQQVASSLYDGIAAQEIDTLSA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +I +P+Y + R + +++ + +K + + + Sbjct: 61 EVCVGMITSDPDYEILATRIVASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAGRVRDD 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + +RD+ F Y GL+ L Y ++G +E PQ FMR Sbjct: 121 ---------------------IVTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYG 382 V++G+ ++ +E Y+ +S F+ +TPTLFN+GT PQ+SSCFL D + G Sbjct: 160 VSIGIHGEDIPSV---LETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKGDSIDG 216 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+G+L E A ++K++GG+G VR + I GTNG+S G+IP L+V N TA VNQ G Sbjct: 217 IYGSLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKG++ YLE WH D+ +FL+LR N GD+ R D+ +A WIPDLFMKRV + W+LF Sbjct: 277 RRKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLF 336 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 PD+ L + G+EFE Y YE E + + A +W+ +L ETG P++ Sbjct: 337 CPDKAPGLSEAVGEEFEALYTKYEE-----EGRANATVPAADVWKAILKSQTETGTPYML 391 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620 +KD CN +S Q+++G + SSNLCTEI + +ET+VCNL SI L + FDY+K Sbjct: 392 YKDACNTKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEK 451 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + + L+ VID N + +E A+KSN HR IGLG+ G L + + S EA Sbjct: 452 LHEITKVVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAK 511 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + E + A+ AS ELA+ G Y +F+GS QG+ D + Sbjct: 512 AMNARIFETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWEGETK--------- 562 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 WD LK+R++ +G+RNS MA PTA+ A I G ++ +P N+Y++ ++G+F Sbjct: 563 -LNYDWDALKERIRGVGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN LV +LK+ LW + M + GSI NI IPDD+K ++ T +EI +I+ A Sbjct: 622 VVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMA 681 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R ++IDQ+QS+NL+++ P+ KL ++ AW GLKT YYLRS++ + +L+ Sbjct: 682 ADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLEPE 741 >gi|18640128|ref|NP_570202.1| SPV042 ribonucleotide reductase large chain [Swinepox virus] gi|18448535|gb|AAL69781.1| SPV042 ribonucleotide reductase large chain [Swinepox virus] Length = 757 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 262/778 (33%), Positives = 429/778 (55%), Gaps = 32/778 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ G + +++ ++ C L + + + +E K +Y+ + D++T Sbjct: 1 MYVIKRSGKKELLSIEKITKRIDNLCYDLDKNFIDANYLANEIIKGLYNNIRTKDIDTFA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I + +Y + +R ++ KL +E + + LY Sbjct: 61 SELIAGFITRHYDYDTLASRIVVSKLHKETTESFSDV--------IHTLYNYINPNNGNH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + N + Y+RD+++ Y G++ L Y L N IE PQ M Sbjct: 113 LPMVSEYLYQQVNKHRDIIDNVIAYDRDYSYSYFGIKTLEKSYLLKQNNKIIERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + +E YN LS F+ ++PTLFN+GT PQ+SSCF+ + DD + Sbjct: 173 RVSLGIHGGDIDDV---IETYNYLSEKWFIHASPTLFNAGTPLPQMSSCFILPIKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L++ A+++K++GG+G + +R G +I G NGKS G++P L++ N+T +NQG Sbjct: 230 GIFDTLKQCALISKHAGGIGLSISNIRAKGTYISGINGKSNGIVPMLRIYNNTVRYINQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA+ Y+E WH D+ +FL LRKN G++ RT D+ TA W+PDLFM+RV ++ W+ Sbjct: 290 GDKRPGAMSIYIEPWHADIFDFLSLRKNVGNEEYRTKDLFTALWVPDLFMERVEKDEEWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P E L D++G +F Y YE + I R LW+ ++ E G P+ Sbjct: 350 LMCPCECPGLCDVWGNDFNKLYIEYETKKKIKAIVKARS-----LWKSIIEAQIEQGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I +KD CN +S Q ++G + SSNLCTEI S+ +E AVCNLGSI+L NN F +DK Sbjct: 405 ILYKDSCNKKSNQSNLGTIRSSNLCTEIIQFSNEDEVAVCNLGSISLSKFVNNNVFMFDK 464 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + V+ L+ +IDIN + + ++ +SN HR IG+G+ G LL + S EA Sbjct: 465 LRIITKILVKNLNKIIDINYYPVIESSRSNKKHRPIGIGVQGLADVFILLGYAFDSEEAK 524 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E I + A+ +S ELA+ G Y ++ S +G+ D N Sbjct: 525 ILNIQIFETIYYAALESSCELAKIYGPYETYNDSPASKGILQYDMW----------LKNP 574 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W+ELKKR+ T G+RNS +A PTA+ + I ++SI+P N+Y + +SGDF Sbjct: 575 TDLWDWNELKKRINTHGLRNSLLIAPMPTASTSQILSNNESIEPYTSNIYTRRVLSGDFQ 634 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VVN L+ EL R++W+ + + + H+GSI +++ +PD++K+I+ T +EI ++E A Sbjct: 635 VVNPHLLRELISRNMWNNDIKNTIVLHNGSIQHLD-LPDNIKQIYKTVWEISQKCILEMA 693 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 + R +IDQ+QS+ +Y+D P+ KL ++ W +GLKT YY+R++SA++ K T++ Sbjct: 694 ADRGAFIDQSQSMTIYIDNPTYAKLTSMHFYGWRLGLKTGMYYMRTKSASNPIKFTVE 751 >gi|322493171|emb|CBZ28456.1| ribonucleoside-diphosphate reductase large chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 799 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 280/819 (34%), Positives = 429/819 (52%), Gaps = 41/819 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204 I+ +G +++ ++ E GL + ++ + + D + L+ + Sbjct: 8 IIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y ++ R L ++ ++ + + L+ + Sbjct: 68 TAAYSVTKHPDYGRMGGRLCTTSLHKQTNASLLET--------FRLLHDHVTVQTNRPAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319 +M L + Y RD +FE+ G + L Y L I +E PQ Sbjct: 120 LIAGDVWEVMQQHHKELQGMIDYSRDLSFEFFGYKTLERSYLLRIESGRGEMRIVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378 FMRVA+G+ + + E Y+L+S F +TPTLFN+GT PQ+SSCFL + D Sbjct: 180 MFMRVALGIHGTDLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH D+ FL L++NTG D +R D+ A WIPDLFM+RV Sbjct: 297 DQGGGKRKGAFAVYLEPWHADIFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D YG+EFE YE YE E + + I A +W +L ETG Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615 P+I +KD CN +S Q+++G + SNLCTEI +S +ETAVCNL SI L + Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKRE 471 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++ L + + R L+ VID N + +E A+ SN +R IGLG+ G A L+ +P+ Sbjct: 472 FNHQLLYTVTKQITRNLNRVIDRNYYPVETARHSNMRNRPIGLGVQGLADAFILMRLPFV 531 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + E E I F A+ +S+ELA+E G Y +FKGS +G+ D Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKNPR----- 586 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + R W LK++V +G+RNS +A PTA+ + I G ++ +P N+YV+ + Sbjct: 587 ---PNSGRWDWASLKEKVMQVGLRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +LV +L R LW+E+M +++ ++GSI I IPDDL++++ T +EI Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGIPDDLRELYRTVWEIPQRK 703 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A R ++IDQ+QSLNL+L P+ ++ + W GLKT YYLR+++A K Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGLYYLRTKAAADAIKF 763 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ K ++ + EC C Sbjct: 764 TVDAKRMK-----EIQERENSQQTMSSRRASQPEECLNC 797 Score = 40.2 bits (92), Expect = 1.9, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 8/58 (13%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +IKRNG +D SKI + F V R + LTE L + Sbjct: 8 IIKRNGEAQPYDASKI----RRRFERVMEGLD----RDHLDVDMLTENVTRGLTDQIR 57 >gi|195119233|ref|XP_002004136.1| GI18284 [Drosophila mojavensis] gi|193914711|gb|EDW13578.1| GI18284 [Drosophila mojavensis] Length = 771 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 286/793 (36%), Positives = 417/793 (52%), Gaps = 46/793 (5%) Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 + + +Y G+S +L+ + +L +YA + AR + L +E Sbjct: 3 ITLKVINGLYCGVSTQELDNLAAEIAASLTTLHADYALLAARIAVSNLHKET-------- 54 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 +K + L+ H +++ + L + + Y+RDF + Y G + Sbjct: 55 KKVFSDVFEDLFKHVNKETNLPSPLVSEYHYNIVKNNSDRLNSAIIYDRDFGYNYFGFKT 114 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L Y L ING E PQ MRVA+G+ E AVE YNLLS F ++PTLF Sbjct: 115 LERSYLLKINGKIAERPQHLLMRVAIGIHG---EDIDSAVETYNLLSERFFTHASPTLFA 171 Query: 361 SGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 + T PQLSSCFL T V D + GIF ++++ AM++K +GG+G + +R G I GTNG Sbjct: 172 AATNRPQLSSCFLLTIVSDSIEGIFKSVEQCAMISKSAGGIGLNVHCIRAKGTSICGTNG 231 Query: 420 KSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S G++P L+V N+ A V+QGG KR GA YLE WH DV EFLDL+KNTG + R D Sbjct: 232 TSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARD 291 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + A WIPDLFMKRV N W+L P + L D++G++FE Y YER E + R Sbjct: 292 LFFALWIPDLFMKRVEANEDWSLMCPHKCPGLPDVWGEDFENLYIKYER-----EGRANR 346 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I A +LW ++ ETG P++ FKD CN +S QQ+VG + SNLCTEI S+ +E A Sbjct: 347 VIKAQSLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIKCSNLCTEIVEYSAPDEIA 406 Query: 599 VCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 VCNL SI L + +D+ KL + + L+ +IDIN + + +AKKSN HR IG Sbjct: 407 VCNLASIALNMFVTQEKSYDFKKLKDVTKIVTKNLNKIIDINYYPLPEAKKSNLRHRPIG 466 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G+ GF AL L+ Y S EA + + E I + A+ AS ELAQ G Y ++ GS Sbjct: 467 IGVQGFADALILMRYSYESREAFLLNQQIFETIYYGALEASCELAQRDGPYETYVGSPVS 526 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 +G+ D T W+ LKK + G+RNS +A PTA+ A I G Sbjct: 527 KGILQYDMWNKSP----------TDLWDWNALKKSIAQHGVRNSLLIAPMPTASTAQILG 576 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 ++S +P N+Y + +SG+F VVN L+ +L + DLWD+ M + + GSI NIE I Sbjct: 577 NNESFEPYTSNIYTRRVLSGEFQVVNHHLLRDLTELDLWDDEMKNQIISSRGSIQNIESI 636 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P +++ ++ T +EI I+ A+ R +IDQ+QS N+++ EP+ KL I+ +W GL Sbjct: 637 PKEIRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGL 696 Query: 898 KT-TYYLRSRSATSVEKSTLKG----------------VDGKLNAVPVTDPNSSTHSLGI 940 KT YYLR++ A + + T+ +++ +D + Sbjct: 697 KTGMYYLRTKPAANAIQFTVNKNISVLESNGHSSFEKNTSLEVDNPSESDIERERRMADM 756 Query: 941 PSSCTSDTECEVC 953 S + C C Sbjct: 757 ICSLENKDACLSC 769 >gi|314055218|ref|YP_004063556.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus tauri virus 2] gi|313575109|emb|CBI70122.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus tauri virus 2] Length = 747 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 273/780 (35%), Positives = 418/780 (53%), Gaps = 44/780 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++++ G + + ++ GL ++ S V + ++YDG++ +++T Sbjct: 1 MRVVKRSGRIEDMKFDNITNRIKNLTYGLSENCDSSKVAQQVASSLYDGITVQEIDTLSA 60 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 LI +P+Y + R +++ + +K + + + Sbjct: 61 EVCIGLITSDPDYEILATRITASNIQKVCPNNFHIAMKKLAKAGIVTEEVARIAGRVRDD 120 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + +RD+ F Y GL+ L Y ++G +E PQ FMR Sbjct: 121 ---------------------IDTKRDYDFGYFGLKTLEKSYLQRLDGILMETPQYMFMR 159 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPDDLYG 382 VA+G+ E +E Y+ +S F+ +TPTLFN+GT PQ+SSCFL D + G Sbjct: 160 VAIGIHG---EDIDSVLETYDKMSQGMFIHATPTLFNAGTPRPQMSSCFLIANKEDSING 216 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+G L E A ++K++GG+G VR + I GTNG+S G+IP L+V N TA VNQ G Sbjct: 217 IYGTLTECAQISKWAGGIGMHIHDVRANKSRIRGTNGQSDGIIPMLRVFNATARYVNQAG 276 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +RKG++ YLE WH D+ EFL+LR N GD+ R D+ ++ WIPDLFMKRV + W+LF Sbjct: 277 RRKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSSLWIPDLFMKRVEEGGQWSLF 336 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 PD+ L D G+EFE Y YE + I + A +W+ +L ETG P++ Sbjct: 337 CPDKAPGLSDAVGEEFEALYTKYEAEGRANAI-----VPAADVWKAILKSQTETGTPYML 391 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDK 620 +KD CN +S Q+++G + SSNLCTEI + +ETAVCNL SI L + FDY+K Sbjct: 392 YKDACNKKSNQKNLGTIKSSNLCTEILEYTDKDETAVCNLASIALPKYVNEETRTFDYEK 451 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + + L+ VID N + +E A+KSN HR IGLG+ G L + S EA Sbjct: 452 LHEITKIVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRYAFDSDEAK 511 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E+ E + ++ AS ELA+ +G+Y +F+GS QGV D + Sbjct: 512 EMNARIFETMYHASLEASCELAEAQGSYETFEGSPTSQGVLQFDMWEGETK--------- 562 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 WD LK+R+K G+RNS MA PTA+ A I G ++ +P N+Y++ ++G+F Sbjct: 563 -LNYDWDVLKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFV 621 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 +VN LVN+LK+ LW + M + GSI NI IPDD+K ++ T +EI +I+ A Sbjct: 622 IVNKHLVNDLKKIGLWSKDMKDLMVKAGGSIQNISDIPDDIKNLYRTVWEIKMKDVIDMA 681 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 ++R ++IDQ+QS+NL+++ P+ KL ++ AW GLKT YYLRS++ + +L+ Sbjct: 682 AQRGRFIDQSQSMNLFMESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLEPE 741 >gi|47222551|emb|CAG02916.1| unnamed protein product [Tetraodon nigroviridis] Length = 898 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 300/922 (32%), Positives = 451/922 (48%), Gaps = 145/922 (15%) Query: 151 DGTLISFNSKRLEMIVEEACSGLQD--VSS------------------------------ 178 DG + + ++ V++ C GL V Sbjct: 1 DGRQEAVSFDKITSRVQKLCYGLNSEFVDPVSTNRQCGPVGQTGPLCVLVPVTRLLWLCQ 60 Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 + + + +Y G++ ++L+T ++ TL K P+YA + AR + L +E Sbjct: 61 AQITLKVIQGLYSGVTTAELDTLAAETAATLTTKHPDYAILAARIAVSNLHKET------ 114 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 +K M+ LY ++ + L + + Y+RDF++ + G Sbjct: 115 --KKVFSDVMEDLYNYVNPLNKLHSPMISKETLHIIRENKARLNSAIIYDRDFSYNFFGF 172 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 + L Y L ING E PQ MRVA+G+ + E A+E YNLLS F ++PTL Sbjct: 173 KTLERSYLLKINGKVAERPQHMLMRVAVGIHQADME---AAIETYNLLSERWFTHASPTL 229 Query: 359 FNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 FN+GT QLSSCFL T+ DD + GI+ L++ A+++K +GG+G + +R G++I GT Sbjct: 230 FNAGTNRSQLSSCFLLTMKDDSIEGIYDTLKQCALVSKSAGGIGLAVSCIRATGSYIAGT 289 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGK-----------------------------RKGAV 448 NGKS G++P L+V N+TA V+QGG R GA Sbjct: 290 NGKSNGLVPMLRVYNNTARYVDQGGNKVRMKVGEQTASRLRNIRDVIQVWLFLGQRPGAF 349 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YLE WH DV +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+L P E Sbjct: 350 AVYLEPWHSDVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMCPSECP 409 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L D +G+EFE Y YE+ E + R + A LW ++ ETG P++ +KD CN Sbjct: 410 GLTDCWGEEFEELYTRYEK-----EGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 464 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRT 627 +S QQ++G + SNLCTEI +S +E AVCNL SI L + + +D+ KLAS +T Sbjct: 465 RKSNQQNLGTIRCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTPQRTYDFHKLASVTKT 524 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 V+ L+ +IDIN + + +AK+SN HR IG+G+ G A L+ PY SPEA + + Sbjct: 525 IVKNLNKIIDINYYPVPEAKRSNLRHRPIGIGVQGLADAFILMRHPYESPEAQLLNTQIF 584 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I A+ AS ELA E G Y ++ GS +GV D G T W Sbjct: 585 ETIYHAALEASCELAAEFGPYQTYAGSPVSRGVLQYDMWGKTP----------TDLWDWT 634 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV------ 801 LK+++ G+RNS +A PTA+ A I G ++S + N+Y + +SG+F V Sbjct: 635 ALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEAYTSNIYTRRVLSGEFQVCTRAFR 694 Query: 802 -------------------VNSFLVNELKQRDLWDEAMISDLKYHDGSI----------- 831 VN L+ +L +R LW + M + L H+GSI Sbjct: 695 PSLTAAGKAERKIWPRLQIVNPHLLKDLTERGLWSDGMKNQLIAHNGSIQVERRICCISS 754 Query: 832 ------------------GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 NI IPDDLK+++ T +EI +++ A+ R +IDQ+QSL Sbjct: 755 TISLWQKPIFYKYFFNGQQNIPEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSL 814 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDP 931 N+++ EP+ KL ++ W +GLKT YYLR++ A + + TL + A + Sbjct: 815 NIHIAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKETLKEAQAARSEEE 874 Query: 932 NSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 875 SKERNAAAVVCSLANKDECMMC 896 >gi|308798579|ref|XP_003074069.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS) [Ostreococcus tauri] gi|116000241|emb|CAL49921.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS) [Ostreococcus tauri] Length = 840 Score = 649 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 269/869 (30%), Positives = 417/869 (47%), Gaps = 94/869 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV----------------SSKIVLSETYKN 188 L ++ DG ++ +++ GL S IV + Sbjct: 4 LYVVKRDGREEPVAFDKITARIKKLAYGLSQEFCDPVRTDHGRLHLPHSQVIVAQKVCMG 63 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 ++ G++ +L+ ++ ++ K P+YA + AR + L + + + + M Sbjct: 64 VFAGVTTKELDELAAETAASMTSKHPDYALLAARISVSNLHKTTVKSFSET--------M 115 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 + +Y R + ++ + L +L Y+RDF ++Y G + L Y L Sbjct: 116 KVMYEHVNKRNGKWSPLLADDVYEIIMANAEKLDAELVYDRDFDYDYFGFKTLERSYLLR 175 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 I+G +E PQ MRV++G+ ++A++ Y++LS ++PTLFN+GT PQL Sbjct: 176 IDGKVVERPQHLLMRVSIGIH---KTDIEKAIDTYHMLSERWMTHASPTLFNAGTPRPQL 232 Query: 369 SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SSCFL + D + GI+ L+E A ++K +GG+ + S + Sbjct: 233 SSCFLICMKEDSIEGIYDTLKECACISKSAGGIALTFEAPTERRTASFRCCVCSTTRLAT 292 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +A V YLE WH D+ ++LDLRKN G + R D+ W D Sbjct: 293 WTKVVVSAR----------NVRIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTND 342 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 LFMKRV N WTL P+E L D +G+EFE YE YE E K + I A LW Sbjct: 343 LFMKRVEANGEWTLMCPNECPGLSDCWGEEFETLYEKYEA-----EGKGKKTIKAQQLWF 397 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 +L ETG+P++ FKD CN +S QQ++G + SSNLCTEI +S +ETAVCNL SI L Sbjct: 398 AILESQVETGNPYMLFKDACNRKSNQQNLGTIKSSNLCTEIVEYTSPDETAVCNLASIAL 457 Query: 608 LAHF-----------------------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 FD+ KL R R L+ +ID+N + +E Sbjct: 458 PRFVIENNPSSPTGRTETKKLVGSLKSKERFFDHSKLFEITRKVTRNLNRIIDVNYYPVE 517 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 AK SN HR IGLG+ G LL +P+ SPEA ++ E E I F A++ S LA Sbjct: 518 AAKNSNMRHRPIGLGVQGLADVFILLGLPFDSPEAQKLNAEIFETIYFAALTESNALAVA 577 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G YS+++GS +GV D GL M +R W L+ + G+RNS + Sbjct: 578 EGPYSTYEGSPVSKGVLQPDMWGLT-------EMPGGNRHDWAGLRASIAQHGVRNSLLV 630 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A PTA+ + I G ++ +P N+Y + +SG+FTVVN L+++L + LWD + ++L Sbjct: 631 APMPTASTSQILGNNECFEPYTSNIYARRVLSGEFTVVNQHLLSDLTELGLWDPELKNEL 690 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 ++GS+ +++ IPD+LK I+ T +EI L++ A+ R +IDQ+QS N+++ +P+ K Sbjct: 691 ISNNGSVQDLD-IPDNLKNIYKTVWEIKQRVLVDMAADRGAFIDQSQSFNVHMSDPNSGK 749 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH------- 936 L ++ AW GLKT YYLRSR+A K T+ K + +S Sbjct: 750 LTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTVDATKTKSKVNKENEAPASPRKPTKADL 809 Query: 937 ------------SLGIPSSCTSDTECEVC 953 + + S + +C +C Sbjct: 810 EKMTDEEKEAYLAAKLQCSLQNRDDCVMC 838 >gi|207345939|gb|EDZ72594.1| YER070Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 732 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 266/759 (35%), Positives = 399/759 (52%), Gaps = 37/759 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ + C GL + + V +Y+G++ +L+ Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ K + LY + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVE--------DLYRYVNAATGKP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L + + Y+RDF + Y G + L Y L ING E PQ M Sbjct: 113 APMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ ++ E A+E YNL+S +F ++PTLFN+GT PQ+SSCFL + D + Sbjct: 173 RVALGIHGRDIE---AALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G+IP ++V N+TA V+QG Sbjct: 230 GIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +F+D+RKN G + R D+ A WIPDLFMKRV +N WT Sbjct: 290 GNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP L D YG EFE Y YE++ + I A LW +L ETG P+ Sbjct: 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG------KTIKAQKLWYSILEAQTETGTPF 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN +S Q+++GV+ SSNLC EI S+ +ETAVCNL S+ L A + Sbjct: 404 VVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTS 463 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++ KL + R L+ VID N + +E+A+KSN HR I LG+ G LL +P+ Sbjct: 464 TYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPF 523 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I ++ AS ELAQ+ G Y +F+GS QG+ D Sbjct: 524 DSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP---- 579 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 WD L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 580 ------YGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 633 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN +L+ +L +WDE M L +GSI + +P +LK ++ T +EI Sbjct: 634 LSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQK 693 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 +I A+ R +IDQ+ SLNL+L P+ KL ++ W Sbjct: 694 TIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGW 732 >gi|170782701|ref|YP_001711035.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter michiganensis subsp. sepedonicus] gi|169157271|emb|CAQ02456.1| ribonucleoside-diphosphate reductase alpha subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 834 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 307/784 (39%), Positives = 466/784 (59%), Gaps = 13/784 (1%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201 + ++ DG+ +++ R+ + +E+A GL + + SE ++DG++ L+ A Sbjct: 2 SITVVKRDGSKEPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEA 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 +I + ++ +P + V AR LL+ + + VL + E++ L+ E+F R I+ Sbjct: 62 VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYS------SPEELKRLHAEHFARNIQ 115 Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 GV LL ++ FDL LA L+ D +Y+G+ L +RY + NG +E+PQ Sbjct: 116 RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+MR+AMGL L E + A+ FY +S ++ + TL N+GT +PQL++CF+ + DD Sbjct: 176 FWMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I ++ L K +GG+G + +R G+ I N S G IPF+ + AV+ Sbjct: 236 IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVS 295 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 +GGK+ GA+C Y+E WH+D EFLDLR+N+GD RRT NTA WI D FMKRV + W Sbjct: 296 RGGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDW 355 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 LF P EVSDL++LYGK F Y Y +A+ G I++F++I+A ++ +L L T HP Sbjct: 356 YLFDPLEVSDLNELYGKAFSERYAFYVGEAEAGRIRMFKRINAREQFKSILISLQTTSHP 415 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 W+T+KD N R+ + G +H SNLCTEITL + +VCNL SINL HFA+ + D+ Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFA 475 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 K+ + R AVR LDN+IDI ++++A SN +RA+GLG+MGF + L Y S E+ Sbjct: 476 KIEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGFSYESEES 535 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 ++ DE ME +S+ AI S +LA+ERGAY +F+GS W +G+ P+DSI L+ R + + Sbjct: 536 YDLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKV 595 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 NRT+RL WD L+ +V GMRN+ MAIAPTA+I + G + +DP + ++ +S SG Sbjct: 596 NRTTRLDWDALRAKV-KGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGK 654 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VN LV +L++ +W E + ++ G I NI IPD +K + T+F++ P +E Sbjct: 655 FLEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLE 713 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 A+R QKWIDQA S N+YL+ + IY W G+KTTYYL + + E+ST+K Sbjct: 714 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVKV 773 Query: 919 VDGK 922 + Sbjct: 774 DKSQ 777 Score = 38.3 bits (87), Expect = 6.4, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53 V+KR+G +D ++I+ AI A Sbjct: 5 VVKRDGSKEPYDANRINLAIEDA 27 >gi|148273613|ref|YP_001223174.1| ribonucleotide-diphosphate reductase subunit alpha [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831543|emb|CAN02510.1| putative ribonucleoside-diphosphate reductase alpha subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 834 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 308/784 (39%), Positives = 465/784 (59%), Gaps = 13/784 (1%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201 + ++ DGT +++ R+ + +E+A GL + + SE ++DG++ L+ A Sbjct: 2 SITVVKRDGTREPYDANRINLAIEDATQGLDENIGWVTQIASELEITLFDGITTQQLDEA 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 +I + ++ +P + V AR LL+ + + VL + E++ L+ E+F R I+ Sbjct: 62 VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYS------SPEELKRLHAEHFARNIQ 115 Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 GV LL ++ FDL LA L+ D +Y+G+ L +RY + NG +E+PQ Sbjct: 116 RGVDEMLLDSRLVQLFDLERLAQALEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+MR+AMGL L E + A+ FY +S ++ + TL N+GT +PQL++CF+ + DD Sbjct: 176 FWMRIAMGLTLNEQNPTETAIAFYEKMSKLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I ++ L K +GG+G + +R G+ I N S G IPF+ + AV+ Sbjct: 236 IEHIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVS 295 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 +GGK+ GA+C Y+E WH+D EFLDLR+N+GD RRT NTA WI D FMKRV + W Sbjct: 296 RGGKKFGALCFYMENWHLDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDDDW 355 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 LF P EVSDL++LYGK F Y Y +A+ G I++F++I A ++ +L L T HP Sbjct: 356 FLFDPLEVSDLNELYGKAFSERYAFYVAEAEAGRIRMFKRIKAREQFKSILISLQTTSHP 415 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 W+T+KD N R+ + G +H SNLCTEITL + +VCNL SINL HFA+ + D+ Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSQHFADGKVDFA 475 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 K+ + R AVR LDN+IDI ++++A SN +RA+GLG+MGF + L Y S E+ Sbjct: 476 KIEQSARLAVRQLDNLIDITRSSVKEADFSNQQNRAVGLGVMGFTDIVEKLGYSYESEES 535 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAM 738 ++ DE ME +S+ AI S +LA+ERGAY +F+GS W +G+ P+DSI L+ R + + Sbjct: 536 YDLIDEIMEHVSYAAIDESADLAKERGAYPNFEGSRWSEGLVPLDSIALMEADRGVPVKV 595 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 NRT+RL WD L+ +V GMRN+ MAIAPTA+I + G + +DP + ++ +S SG Sbjct: 596 NRTTRLDWDALRAKV-KGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGK 654 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VN LV +L++ +W E + ++ G I NI IPD +K + T+F++ P +E Sbjct: 655 FLEVNRNLVKDLQELGIW-ETVRENILRSQGDIQNIAAIPDHVKATYRTSFQLSPYAFLE 713 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 A+R QKWIDQA S N+YL+ + IY W G+KTTYYL + + E+ST+K Sbjct: 714 VAARAQKWIDQAISRNMYLETRDLGDMMDIYFAGWERGVKTTYYLHMKPRHTAEQSTVKV 773 Query: 919 VDGK 922 + Sbjct: 774 DKSQ 777 Score = 38.7 bits (88), Expect = 4.9, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 15/23 (65%) Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53 V+KR+G +D ++I+ AI A Sbjct: 5 VVKRDGTREPYDANRINLAIEDA 27 >gi|300709534|ref|YP_003735348.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus jeotgali B3] gi|299123217|gb|ADJ13556.1| ribonucleoside-diphosphate reductase alpha subunit [Halalkalicoccus jeotgali B3] Length = 797 Score = 648 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 399/799 (49%), Positives = 524/799 (65%), Gaps = 12/799 (1%) Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 +E I+E+A + S + ++ Y+G S ++ A+I + I++ P Y Sbjct: 8 PDGIEAILEQAWDDRAEGSPDDIARAARRDCYEGASREEVYEAIIGALTARIDRVPEYRT 67 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 V AR + E + + + Y + F IE GV+A LL E M ++DL Sbjct: 68 VAARVFRRRYFEERVG--------VAPDDHEAAYRDSFVASIERGVEADLLDERMGEYDL 119 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKE 336 LA L+ RD +Y+ ++ L RYFL IE+PQ F+MRVAMG+AL+E E+E Sbjct: 120 SRLAEALEPTRDDRLDYMAMETLSQRYFLREGDEPIELPQTFWMRVAMGIALREAPEERE 179 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 K A EFY+LLS+ F+ STPTLF++GT HPQLSSC+LTTVPDDL GIF A +E+A L+K+ Sbjct: 180 KYAKEFYDLLSTLRFVHSTPTLFHAGTTHPQLSSCYLTTVPDDLEGIFDAYKEHAKLSKW 239 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 SGGLGNDWTP+R GA I T +S G +PFLK+AND A+N+ GKR+GA CAYLE WH Sbjct: 240 SGGLGNDWTPLRASGARISSTGVESTGTVPFLKIANDVTGAINRSGKRRGAACAYLEAWH 299 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 +D FLDLR+NTGD+RRRTHDMNTA W+PDLFMKRV + W LFSP+EV DLH YG+ Sbjct: 300 MDFPAFLDLRRNTGDERRRTHDMNTAAWVPDLFMKRVQNDEKWMLFSPEEVPDLHGTYGR 359 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE YE YER+A+ GE+ + + A LWR+ LT LFETGHPWITFKDPCN+RSPQ H Sbjct: 360 EFEERYEEYERRAEAGELDQYERCEAAELWRRTLTRLFETGHPWITFKDPCNVRSPQDHA 419 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 GV++SSNLCTEITLN+S EETAVCNLGS+NL H + D + LA T+ TA+R+LDNV+ Sbjct: 420 GVINSSNLCTEITLNTSEEETAVCNLGSVNLSRHVIEDGLDREALAETVNTAMRMLDNVV 479 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + EKA++SN HR +GLG MGF AL IP S +AVE AD + E +S+HAI Sbjct: 480 DLNFYPTEKAERSNMRHRPVGLGTMGFHDALLEQDIPMNSEKAVEFADRTQELVSYHAIL 539 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKT 755 S ELA ERGAY S++GS WD+ +FP D++ +L E R E+ ++ RL W +++ V Sbjct: 540 GSSELAAERGAYGSYEGSKWDRDLFPQDTVSILEEERGREIPIDVEERLDWGRVREHVSE 599 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 GMRNSN MA+APTATI+ I G + SI+P Y NLYVKSNMSGDFTV+N LV++L++R L Sbjct: 600 HGMRNSNTMAVAPTATISTIAGTTPSIEPIYSNLYVKSNMSGDFTVINDHLVSDLRERGL 659 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W + + + YHDGSI I+ IP+D+ ++H AFEIDP + ++ R WIDQ QS N+ Sbjct: 660 WTDEIRDRITYHDGSIQEIDAIPEDVTELHRGAFEIDPRHQLRLSAERATWIDQGQSHNV 719 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + G L +Y AW +GLKTTYYLR+ A+ VEK+TL + + + Sbjct: 720 FFPSTDGSLLAGVYETAWELGLKTTYYLRTLGASQVEKTTLD-MREYDDTQFRDSDDDDD 778 Query: 936 HSLGIPSSCTSDTECEVCQ 954 G D CE CQ Sbjct: 779 EDEGNGLPSVEDPTCEACQ 797 >gi|164659252|ref|XP_001730750.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966] gi|159104648|gb|EDP43536.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966] Length = 850 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 264/752 (35%), Positives = 406/752 (53%), Gaps = 33/752 (4%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 V + + +Y+G++ +L+ ++ P+YA + AR + L +E + Sbjct: 4 VDPIEITRKVIDGIYEGVTTVELDNLAAETAAYKTTTHPDYAVLAARIAISNLHKETKKS 63 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295 + +Q L+ + + + L + + YERDF + + Sbjct: 64 FSQV--------IQDLHDYVNPKTGRPSSMISEETFNTVMKHRELLDSAIIYERDFHYNF 115 Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 G + L Y L ING E PQ MRVA+G+ E + A+E YN +S F ++ Sbjct: 116 FGFKTLERSYLLRINGKVAERPQHMLMRVAVGIHG---EDIESAIETYNYMSEKAFTHAS 172 Query: 356 PTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PTLFN+GT +PQ+SSCFL ++ D + GI+ L+ AM++K +GG+G + +RG G++I Sbjct: 173 PTLFNAGTPNPQMSSCFLVSMKEDSIEGIYDTLKTCAMISKTAGGIGLNIHNIRGTGSYI 232 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 GTNG S G++P L+V N+TA V+QG KR GA YLE WH DV EF+DLRKN G D Sbjct: 233 AGTNGVSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHPDVFEFVDLRKNHGKDE 292 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R D+ A W+PDLFMKRV +N W+L P E L D YG+EF + E Sbjct: 293 VRARDLFLAMWVPDLFMKRVEKNEDWSLMCPAEAPGLADCYGEEF-----EELYERYERE 347 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 + R + A LW +L ETG+P++ +KD N +S Q+++G + SSNLCTEI SS Sbjct: 348 GRAKRSVKAQKLWYAILEAQIETGNPFMLYKDAANRKSNQKNLGTIKSSNLCTEIMEYSS 407 Query: 594 SEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 EETAVCNL SI L + +++ +L + + L+ +IDIN + + A++S Sbjct: 408 PEETAVCNLASIALPTFIEGTGASKIYNFQRLHDVAKVVCKNLNRIIDINYYPVPSARRS 467 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR IG+G+ G A ++ P+ S EA + + E I A+ S ELA++ G Y Sbjct: 468 NMRHRPIGIGVQGLADAFMIMGYPFDSQEARRLNLQIFETIYHAALERSCELAEQYGTYE 527 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++GS QG+ D T W LK ++ G+RNS +A PT Sbjct: 528 TYQGSPASQGILQYDMWNRTP----------TDLWDWASLKAKIAQHGLRNSLLLAPMPT 577 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ + I G ++ +P N+Y++ ++G+F VVN +L+ EL + LW+++M + H G Sbjct: 578 ASTSQILGFNECFEPYTNNIYMRRVLAGEFQVVNPWLLRELVELGLWNDSMKQKIIAHGG 637 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI NI IPD +K ++ T +EI +I+ A+ R ++ Q+QSLN++L PS +L ++ Sbjct: 638 SIQNIPGIPDHIKALYKTVWEISQKVIIDMAADRGAFVCQSQSLNIHLSAPSFGQLTSMH 697 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 W GLKT +YYLR+R A S + T+ + Sbjct: 698 FYGWKKGLKTGSYYLRTRPAASAIQFTVSNEE 729 >gi|146091813|ref|XP_001470128.1| ribonucleoside-diphosphate reductase large chain [Leishmania infantum] gi|134084922|emb|CAM69320.1| putative ribonucleoside-diphosphate reductase large chain [Leishmania infantum JPCM5] Length = 799 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 282/819 (34%), Positives = 435/819 (53%), Gaps = 41/819 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204 I+ +G +++ ++ E GL + ++ + + D + L+ + Sbjct: 8 IIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y ++ R L ++ ++ + + L+ + Sbjct: 68 TAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLET--------FRLLHDHVTVQTNRPAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319 +M L + + Y RD FE+ G + L Y L I +E PQ Sbjct: 120 LIADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378 FMRVA+G+ + + E Y+L+S F +TPTLFN+GT PQ+SSCFL + D Sbjct: 180 MFMRVALGIHGADLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH DV FL L++NTG D +R D+ A WIPDLFM+RV Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D YG+EFE YE YE E + + I A +W +L ETG Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615 P+I +KD CN +S Q+++G + SNLCTEI +S +ETAVCNL SI L + Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKRE 471 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++ L + + R L+ VID N + +E A++SN +R IGLG+ G A L+ +P+ Sbjct: 472 FNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFV 531 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + E E I F A+ +S+ELA+E G Y +F GS +G+ D Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKN------- 584 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A + R W LK++V +GMRNS +A PTA+ + I G ++ +P N+YV+ + Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +LV +L R LW+E+M +++ ++GSI I +PDDL++++ T +EI Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRK 703 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A R ++IDQ+QSLNL+L P+ ++ + W GLKT YYLR+++A K Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKF 763 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ K + + +S ++ + + EC C Sbjct: 764 TVDAKRMK----EIQERENSQQTMSSHRA-SQPEECLNC 797 >gi|159040365|ref|YP_001539618.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora arenicola CNS-205] gi|157919200|gb|ABW00628.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora arenicola CNS-205] Length = 821 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 321/856 (37%), Positives = 461/856 (53%), Gaps = 65/856 (7%) Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET 185 + RA + + +++ +G + ++ VE + L +V V ++T Sbjct: 4 TRERATPGQAGQEQRRQ-VMEVRKRNGDTEPVDVNKIVKAVERWVADLDEVDPLRVATKT 62 Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245 +YDG + ++L+ I ++ LI +EP Y+K+ AR L + +EV Sbjct: 63 ISGLYDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQQVAS------ 116 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILY 302 F + I L+ + F + L + + D FEY GL+ + Sbjct: 117 ----------FSQSIRYAHGLGLISDDTAAFVSRNARKLDDAVDPAGDLRFEYFGLRTVA 166 Query: 303 DRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 DRY L SR +E PQ + +RVA G++ E A+ FY L+SS ++ S+PTLFN Sbjct: 167 DRYLLRHPQSRLVVETPQYWLLRVACGMSRTPAE----AIGFYQLMSSLAYLPSSPTLFN 222 Query: 361 SGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 SGTRH Q+SSCFL P D+L I+ + A L+K+SGG+G W+ VRG GA I GTNG Sbjct: 223 SGTRHTQMSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNG 282 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 +S G++PFLK + AVNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++ Sbjct: 283 RSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNL 342 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 N ANW+PD FM+RV + W+L P + +L DLYG EF+ AY E+ K R Sbjct: 343 NLANWLPDEFMRRVEADGDWSLIDPSDAPELPDLYGDEFDAAYRVAEK-------KAVRT 395 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEET 597 + A L+ +M+ L +TG+ W+TFKD N S Q Q +H SNLCTEI ++ ET Sbjct: 396 VKARDLYGRMMRTLAQTGNGWMTFKDRSNTLSNQTGQPANTIHLSNLCTEILEVNNDTET 455 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 AVCNLGS+NL AH + D++KL +T+RTAV LD VIDIN + E+A SN R +G Sbjct: 456 AVCNLGSVNLGAHVTVDGVDWEKLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVG 515 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LGLMG Q A L +P+ S EA E++ E I A+ S LA+ G + ++ + Sbjct: 516 LGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAETRAA 575 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 +G D G T W LK R+ G+RNS +AIAPTATIA+I G Sbjct: 576 RGDLHPDLWGATP----------TQTRRWAGLKARIAEHGLRNSLLVAIAPTATIASIAG 625 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P NL+ + MSG+F VN++LV ELK R LW + ++ +GS+ + + Sbjct: 626 CYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARGLWTAQIRDQIRRAEGSVQGLGEL 685 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P +++++ TA+E+ LI+ A+ R +IDQ+QSLNL+L P+ KL +Y AW GL Sbjct: 686 PAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGL 745 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS-------------------THSL 938 KTTYYLRSR AT ++++T+ V T + Sbjct: 746 KTTYYLRSRPATRIQQATVAVTPTVPPGVADASSAQPGVAPGLSGAAASSASGVAGTDAE 805 Query: 939 GIPSSCTSDTECEVCQ 954 + S + CE CQ Sbjct: 806 ALACSLENPESCEACQ 821 >gi|157871642|ref|XP_001684370.1| ribonucleoside-diphosphate reductase large chain [Leishmania major strain Friedlin] gi|68127439|emb|CAJ05210.1| putative ribonucleoside-diphosphate reductase large chain [Leishmania major strain Friedlin] Length = 799 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 281/819 (34%), Positives = 430/819 (52%), Gaps = 41/819 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204 I+ +G +++ ++ E GL + ++ + + D + L+ + Sbjct: 8 IIKRNGEAQPYDASKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y ++ R L ++ ++ + + L+ + Sbjct: 68 TAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLET--------FRLLHSHVTVQTNRPAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319 +M L + Y RD FE+ G + L Y L I +E PQ Sbjct: 120 LIADDVWEVMKQHHAELQGMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378 FMRVA+G+ + + E Y+L+S F +TPTLFN+GT PQ+SSCFL + D Sbjct: 180 MFMRVALGIHGADLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH DV FL L++NTG D +R D+ A WIPDLFM+RV Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D YG+EFE YE YE E + + I A +W +L ETG Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF- 616 P+I +KD CN +S Q+++G + SNLCTEI +SS+ETAVCNL SI L + Sbjct: 412 GPFILYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSSQETAVCNLASIALPRFVEVEKRE 471 Query: 617 -DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 ++ L + + R L+ VID N + +E A++SN +R IGLG+ G A L+ +P+ Sbjct: 472 LNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFV 531 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + E E I F A+ +S+ELA+E G Y +F GS +G+ D Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFAGSPASEGILQFDMWKN------- 584 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A + R W LK++V +GMRNS +A PTA+ + I G ++ +P N+YV+ + Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +LV +L R LW+E+M +++ ++GSI I +PDDL++++ T +EI Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILAINGMPDDLRELYRTVWEIPQRK 703 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A R ++IDQ+QSLNL+L P+ ++ + +W GLKT YYLR+++A K Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYSWEAGLKTGVYYLRTKAAADAIKF 763 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ K ++ + EC C Sbjct: 764 TVDAKRMK-----EIQERETSQQTMSSHRASQPEECLNC 797 Score = 39.8 bits (91), Expect = 2.1, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 8/58 (13%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +IKRNG +D SKI + F V R + LTE L + Sbjct: 8 IIKRNGEAQPYDASKI----RRRFERVMEGLD----RDHLDVDMLTENVTRGLTDQIR 57 >gi|322500426|emb|CBZ35503.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 799 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 281/819 (34%), Positives = 435/819 (53%), Gaps = 41/819 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIF 204 I+ +G +++ ++ E GL + ++ + + D + L+ + Sbjct: 8 IIKRNGEAQPYDACKIRRRFERVMEGLDRDHLDVDMLTENVTRGLTDQIRYDKLDELVAQ 67 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ + K P+Y ++ R L ++ ++ + + L+ + Sbjct: 68 TAAYSVTKHPDYGRMGGRLCTTSLHKQTNESLLET--------FRLLHDHVTVQTNRPAP 119 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQA 319 +M L + + Y RD FE+ G + L Y L I +E PQ Sbjct: 120 LIADDVWEVMQQHHKELQSMIDYSRDLNFEFFGYKTLERSYLLRIETGRGEMRIVERPQQ 179 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT-TVPD 378 FMRVA+G+ + + E Y+L+S F +TPTLFN+GT PQ+SSCFL + D Sbjct: 180 MFMRVALGIHGADLKNV---RETYDLMSKGFFTHATPTLFNAGTPKPQMSSCFLVASKED 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V N+TA V Sbjct: 237 SIDGIYDTLKECAVISKAAGGIGLHVHNIRAAGSYIAGTNGTSNGLVPMLRVFNNTARYV 296 Query: 439 NQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG KRKGA YLE WH DV FL L++NTG D +R D+ A WIPDLFM+RV Sbjct: 297 DQGGGKRKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEG 356 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 WTL P+ L D YG+EFE YE YE E + + I A +W +L ETG Sbjct: 357 KWTLMDPNTCPGLSDCYGEEFERLYERYE-----SEGRGVKTIQAQEVWFAILESQIETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQ 615 P++ +KD CN +S Q+++G + SNLCTEI +S +ETAVCNL SI L + Sbjct: 412 GPFVLYKDACNSKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKRE 471 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++ L + + R L+ VID N + +E A++SN +R IGLG+ G A L+ +P+ Sbjct: 472 FNHQLLYTVTKQITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFV 531 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + E E I F A+ +S+ELA+E G Y +F GS +G+ D Sbjct: 532 SAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKN------- 584 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A + R W LK++V +GMRNS +A PTA+ + I G ++ +P N+YV+ + Sbjct: 585 -ARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVL 643 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +LV +L R LW+E+M +++ ++GSI I +PDDL++++ T +EI Sbjct: 644 SGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRK 703 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A R ++IDQ+QSLNL+L P+ ++ + W GLKT YYLR+++A K Sbjct: 704 LIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKF 763 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+ K + + +S ++ + + EC C Sbjct: 764 TVDAKRMK----EIQERENSQQTMSSHRA-SQPEECLNC 797 >gi|224001624|ref|XP_002290484.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335] gi|220973906|gb|EED92236.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335] Length = 811 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 255/840 (30%), Positives = 421/840 (50%), Gaps = 62/840 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG L + ++ ++ + L +S + + Y L +++T Sbjct: 1 MYVTKKDGRLELLDKNKILQRLQSLSTNLSTPYLSLPTLATSILHGTYPNLPTREIDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ ++ + P+Y ++ AR + + K E ++ Sbjct: 61 SETAASMSTQHPDYGRLAARICASANHKSTPDSFSKAMLLLN-EEGGGFVNNEIADLVKR 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 + + +K+ERDF Y G + L Y L + +E Q + Sbjct: 120 RG--------------KEIDDRIKHERDFEMTYFGYKTLERSYLLKLNEDTIVERIQYLW 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + A E Y+L+S +F ++PTLF++GT HPQLSSCFL + DD + Sbjct: 166 MRVALGIHC--YANLQAAFETYDLMSRGYFTHASPTLFHAGTTHPQLSSCFLVQMSDDSI 223 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L+ A+++K +GG+G +R G I GT G S G++P L+V + T+ V+Q Sbjct: 224 NGIYDTLKRCAVISKAAGGIGLCVHKIRARGTFIKGTRGVSNGLVPMLRVFDVTSHYVDQ 283 Query: 441 GG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 GG KR GA YLE WH D+ + L+L+KN G + +R ++ W+PDLFMKRV ++ W Sbjct: 284 GGGKRPGAFAIYLEPWHADIFDVLNLKKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVW 343 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 +L P L + +G++FE Y YE + + R++ A LW +L ETG P Sbjct: 344 SLMCPHRCPGLSECHGEKFEELYAKYE-----SDGRYTRQVRARELWAAILEAQIETGTP 398 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----- 614 ++ +KD N +S QQ++G + SNLCTEI ++ EE AVCNL SI L ++ Sbjct: 399 YLLYKDAANKKSNQQNLGTIQCSNLCTEIIQYTNEEEVAVCNLASICLPKFVVSDRGNFG 458 Query: 615 -------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 FD+++L + + LD VID+N + IE AKKSN +HR +G+G+ G Sbjct: 459 STEGSGAYFDHEQLHKVAKIVTKNLDKVIDVNQYPIEGAKKSNRSHRPVGIGVSGLADTF 518 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L +P+AS EA + + E I ++ AS E+A+E+G+Y +F GS +G + G Sbjct: 519 LRLGLPFASEEAKTLNEAIFETIYHASLEASNEIAREKGSYETFAGSPASEGKLQFNLWG 578 Query: 728 LLAEVRDELAMNRTS-------------RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + ++++ W+ L++ + G+RNS +A PTA+ + Sbjct: 579 VDDVETPSHRKDQSALAFQKYSTQVNGGGYDWETLRQNIIEGGLRNSLLVAPMPTASTSQ 638 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I GV++ +P NLYV+ +G+F +VN L+ +L LW++++ + L GS+ I Sbjct: 639 ILGVNECFEPFASNLYVRRVKAGEFIIVNPHLIQDLTDLGLWNQSVRNQLMRDGGSVAKI 698 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 E +PD LK ++ T +E+ +I+ A+ R K+IDQ+QSLNL++ +P+ KL ++ AW Sbjct: 699 ECVPDRLKGLYKTVWEMKMKDVIDMAADRGKFIDQSQSLNLFIADPTVDKLTAMHFYAWK 758 Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 GLKT YYLR+R A + + T++ P + C C Sbjct: 759 KGLKTGIYYLRTRPAVNAIQYTVEKD---------ALPEVDASPQQNIPTLDDSETCLSC 809 >gi|145596897|ref|YP_001161194.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora tropica CNB-440] gi|145306234|gb|ABP56816.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora tropica CNB-440] Length = 909 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 323/849 (38%), Positives = 463/849 (54%), Gaps = 58/849 (6%) Query: 126 SDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSET 185 + RA + ++ + + +G + ++ VE + L +V V ++T Sbjct: 99 TRERATNGPAGAEQRRQ-VMGVRKRNGDTEPVDVNKIVRAVERWVADLDEVDPLRVATKT 157 Query: 186 YKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245 +YDG + ++L+ I ++ LI +EP Y+K+ AR L + +EV Sbjct: 158 ISGLYDGATTAELDRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQQVAS------ 211 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILY 302 F + I L+ + F + L + + D FEY GL+ + Sbjct: 212 ----------FSQSIRYAHGLGLISDETAAFVSRNARKLDDAVDPAGDLRFEYFGLRTVA 261 Query: 303 DRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 DRY L SR +E PQ + +RVA GL+ E A+ FY L+SS ++ S+PTLFN Sbjct: 262 DRYLLRHPQSRLVVETPQYWLLRVACGLSGTPAE----AIGFYRLMSSLAYLPSSPTLFN 317 Query: 361 SGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 SGTRH Q+SSCFL P D+L I+ + A L+K+SGG+G W+ VRG GA I GTNG Sbjct: 318 SGTRHTQMSSCFLVDSPRDELDSIYQRYHQVAKLSKFSGGIGIAWSRVRGRGALIRGTNG 377 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 +S G++PFLK + AVNQGG+RKGA C YLE WH D+EEFL+LR NTG+D RRTH++ Sbjct: 378 RSNGIVPFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNL 437 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 N ANW+PD FM+RV + W+L P E +L DLYG+EF+ AY E+ K R Sbjct: 438 NLANWLPDEFMRRVEADGDWSLIDPSEAPELPDLYGEEFDAAYRVAEK-------KAVRT 490 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEET 597 + A L+ +M+ L +TG+ W+TFKD N S Q +H SNLCTEI ++ ET Sbjct: 491 VKARDLYGRMMRTLAQTGNGWMTFKDRSNTLSNQTGEPGNTIHLSNLCTEILEVNNDAET 550 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 AVCNLGS+NL AH + D++KL T+RTAV LD VIDIN + E+A SN R +G Sbjct: 551 AVCNLGSVNLGAHVTADGVDWEKLRDTVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVG 610 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LGLMG Q A L +P+ S EA E++ E I A+ S LA+ G + ++ + Sbjct: 611 LGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAQTRAA 670 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 +G + G + + W LK RV G+RNS +AIAPTATIA+I G Sbjct: 671 RGDLHPELWGAVP----------SQPQRWAGLKARVGEHGLRNSLLVAIAPTATIASIAG 720 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P NL+ + MSG+F VN++LV ELK R LW ++ +K +GS+ + + Sbjct: 721 CYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARGLWTASIRDQIKRAEGSVQGLAEL 780 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGL 897 P +++++ TA+E+ LI+ A+ R +IDQ+QSLNL+L P+ KL +Y AW GL Sbjct: 781 PAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGL 840 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS------------THSLGIPSSCT 945 KTTYYLRSR AT ++++T+ V V T + + S Sbjct: 841 KTTYYLRSRPATRIQQATVAVTSTAQPGVAVASSAQPGGAASSISGFAGTDAEALACSLE 900 Query: 946 SDTECEVCQ 954 + CE CQ Sbjct: 901 NPESCEACQ 909 Score = 38.3 bits (87), Expect = 7.0, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%) Query: 11 DEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52 + + ++ + + V KRNG D +KI RA+ + Sbjct: 99 TRERATNGPAGAEQRRQVMGVRKRNGDTEPVDVNKIVRAVER 140 >gi|126327914|ref|XP_001363871.1| PREDICTED: similar to LOC505537 protein [Monodelphis domestica] Length = 804 Score = 646 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 282/836 (33%), Positives = 442/836 (52%), Gaps = 61/836 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL + V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMEFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY + Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPYNSKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDVVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---KDDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+DV EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L D++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDDVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVTLEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I + A+ AS ELA+E G Y +++GS +G+ D + Sbjct: 525 QLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWN----------VA 574 Query: 740 RTSRLPWDELKKRVKTI---GMRNSNCMAI----APTATIANICGV-------------- 778 T W LK+++ G+RN + T T++ + Sbjct: 575 PTDLWDWKVLKEKIAKYLDGGIRNELLITAGHYKPSTNTLSFLSNSEFLSPKLGSLGLSY 634 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + S + +V +VN L+ +L +R LW+E M + + +GSI +I IP Sbjct: 635 TCSFYCFISHHFV--------QIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIP 686 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 +DLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLK Sbjct: 687 EDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLK 746 Query: 899 T-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T YYLR+R A + + TL K + D ++ + S + EC +C Sbjct: 747 TGMYYLRTRPAANPIQFTLNKEKLKEKEKVLKDEEKERNTAAMVCSLENRDECLMC 802 >gi|312385901|gb|EFR30291.1| hypothetical protein AND_00204 [Anopheles darlingi] Length = 775 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 280/768 (36%), Positives = 417/768 (54%), Gaps = 29/768 (3%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 + V + + +Y G++ +L+ ++ T+ +YA + AR + L +E Sbjct: 1 MDFVDPVAITLKVINGLYSGVTTQELDNLAAETAATMTTDHADYAILAARLAVSNLHKET 60 Query: 233 LTTVYKKP-------QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 K Q++ M LY + H ++ + L + + Sbjct: 61 KKQFSGKRMTPLVIRQESLEKVMHDLYMMENEFLKTKSPMISNTHYKLIMENADRLNSAI 120 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 Y+RDF + Y G + L Y L I G +E PQ MRVA+G+ E A+E YNL Sbjct: 121 IYDRDFGYNYFGFKTLERSYLLKIKGKIVERPQHMLMRVAIGIHG---EDIDSAIETYNL 177 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDW 404 LS +F ++PT+F + T+ PQLSSCFL T+ DD + GI+ L++ A+++K +GG+G + Sbjct: 178 LSERYFTHASPTMFAAATQRPQLSSCFLLTMSDDSIEGIYDTLKQCALISKSAGGIGLNV 237 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFL 463 +R G +I GTNG S G++P L+V N+TA V+QG KR GA YLE WH DV EFL Sbjct: 238 HCIRAKGTYIAGTNGISNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHGDVFEFL 297 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 DL+KNTG + R DM A WIPDLFM+RV N W+L P + L + +G+EFE Y Sbjct: 298 DLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMCPHDCPGLSETWGEEFEKLYT 357 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 YER E + R++ A LW ++ ETG P++ +KD CN +S QQ++G + SN Sbjct: 358 GYER-----EGRFTRQVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQNIGTIKCSN 412 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHT 642 LCTEI SS +E AVCNL SI L ++ +D+ KL +T + L+ +IDIN + Sbjct: 413 LCTEIVEYSSKDEIAVCNLASIALNMFVKPDRTYDFAKLKEVAKTVTKNLNKIIDINYYP 472 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + +AK+SN HR IG+G+ G A L+ PY S EA + + E I F A+ AS ELA Sbjct: 473 VPEAKRSNMRHRPIGIGVQGMADAFILMRHPYESEEAQLLNQQMFETIYFGALEASCELA 532 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 + G Y S+ GS +G+ D T W ELK+ + T G+RNS Sbjct: 533 AQDGPYESYDGSPVSKGILQYDMWEKKP----------TELWDWAELKRNIVTHGVRNSL 582 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A PTA+ A I G ++S +P N+Y + +SG+F VVN L+ +L + +LWD+ M + Sbjct: 583 LLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELWDDEMKN 642 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 + +GSI IE IP ++ ++ T +EI I+ A+ R +IDQ+QS N+++ EP+ Sbjct: 643 KILAQNGSIQKIEEIPQHIRNLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIHVAEPNY 702 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 KL I+ W MGLKT YYLR++ A + + T+ + A Sbjct: 703 GKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKSKLQNGATESN 750 >gi|320107275|ref|YP_004182865.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus saanensis SP1PR4] gi|319925796|gb|ADV82871.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus saanensis SP1PR4] Length = 815 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 329/824 (39%), Positives = 473/824 (57%), Gaps = 39/824 (4%) Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 P + + +G L + ++ V+ GL V + + S+T +YDG + Sbjct: 23 PAREEMPTMGVRKRNGALEPVDVNKIVRAVQRNAHGLGQVDAIRIASKTIGGLYDGATTR 82 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L++ I ++ +LI +EP Y+K+ AR LL + +EV+ + + Y E Sbjct: 83 ELDSISIDTAASLIAEEPQYSKLAARLLLGTIMKEVVGQ----NLHSFSQSISYGYQEGV 138 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRI 314 + + L + + E FEY GL+ +YDRY L I Sbjct: 139 VS---------KATAEFVQTHMRKLNHAINDELSDRFEYFGLRTVYDRYLLRDPISRKVI 189 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF-L 373 E PQ FF+RVA GLA A+EFYNL++S +M S+PTLFNSGT+H Q+SSC+ Sbjct: 190 ETPQHFFLRVACGLAGTP----HEAIEFYNLIASHDYMPSSPTLFNSGTKHAQMSSCYLH 245 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D L I+ + A+L+K+SGG+G + VR G+ I TNG S G++P+L+ + Sbjct: 246 DSPLDSLDSIYDTYKNVALLSKFSGGIGLAFHRVRSEGSLIRATNGLSNGIVPWLRTLDS 305 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + AVNQGGKRKGA C YLE WH D+E FL+LR+NTGD RRT+++N ANWIPDLFM+RV Sbjct: 306 SVAAVNQGGKRKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMQRV 365 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ W+LF P EV DLYGKEFE AY E + K R+I A L+ +M+ L Sbjct: 366 DEDGIWSLFDPKEVPTFPDLYGKEFEEAYIQAE-----TDKKYHRQIKARDLYMRMMRSL 420 Query: 554 FETGHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG+ W+TFKD CNI++ Q + VVH SNLCTEIT +S +ETAVCNLGS+NL H Sbjct: 421 AETGNGWMTFKDACNIKNNQTGKPGNVVHLSNLCTEITEVTSKDETAVCNLGSVNLARHV 480 Query: 612 ANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +FD++KLA+T+R AV +LD VIDIN + + +A +N R +GLG+MG Q + Sbjct: 481 TPEGKFDFEKLANTVRIAVPMLDRVIDINYYPVPQAASANARWRPVGLGVMGLQDVFFQM 540 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 IP+ SPEA+ I+ + E I ++A+ ASVELA+ G + SF + +G F D Sbjct: 541 RIPFDSPEALAISTKIQEEIYYYAVLASVELAEREGKHPSFDETRLAKGEFQFDLWN--- 597 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + WD L++R+ G+RNS +AIAPTATIA+I G + I+P NL+ Sbjct: 598 -------VKPADPERWDALRQRILKSGIRNSLLIAIAPTATIASIVGCYECIEPQISNLF 650 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VN +L+ ELKQR +W E M +K +GS+ +E +P+DL+ ++ T +E Sbjct: 651 KRETLSGEFLQVNRYLIEELKQRGMWTEEMRVRMKMSEGSVQAMEDLPEDLRAVYRTVWE 710 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + LI+ A R +IDQ+QSLNL+ + P+ +L +Y AW GLKTTYYLRSR AT Sbjct: 711 VPMRSLIDMARDRNAFIDQSQSLNLFAESPNIGRLSSMYMHAWKSGLKTTYYLRSRPATK 770 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSS-THSLGIPSSCTSDTECEVC 953 + K+T+ A+ T + I S + CE C Sbjct: 771 ISKTTVSKAAAASAALADTASRPKVADAEAIACSLENPESCEAC 814 Score = 41.4 bits (95), Expect = 0.76, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFP--EKIKGVQVIKRNGGVTSFDPSKISRAIMK 52 M + + + + L FP E++ + V KRNG + D +KI RA+ + Sbjct: 1 MAATTTNHNQIQTSLSDLTPSFPAREEMPTMGVRKRNGALEPVDVNKIVRAVQR 54 >gi|50955340|ref|YP_062628.1| ribonucleotide-diphosphate reductase subunit alpha [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951822|gb|AAT89523.1| ribonucleoside-diphosphate reductase, alpha chain [Leifsonia xyli subsp. xyli str. CTCB07] Length = 896 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 320/829 (38%), Positives = 469/829 (56%), Gaps = 24/829 (2%) Query: 115 TREYVLY--REERSDVRAAQS--------HSKSDAPIAPKLKIMMDDGTLISFNSKRLEM 164 Y++ R+ R+ R A++ S + + ++ +G +++ ++ + Sbjct: 22 APRYIVVERRDARTCPRGAEAVSHDFAARPSGTHRGENVAITVVKRNGEREPYDANKINL 81 Query: 165 IVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTAR 222 +E A +GL + + SE ++DG++ L+ A+I + ++ +P + V AR Sbjct: 82 AIEHAAAGLDENITWVTQIASELELTLFDGITTQQLDEAVIQVALQNVKDDPAFDIVAAR 141 Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYL 281 LL+ + + VL + E+ L+ +F YIE GV LL FDL L Sbjct: 142 LLLKIIYKRVLGDYA-SGTDGDNAELVELHARHFRGYIERGVSETLLDSRFTGLFDLDRL 200 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 A L RD +Y+G+ L +RY + NG +E+PQ F+MR+AMGL+L ET+ A+ Sbjct: 201 AGHLDPSRDELLKYIGVVTLNNRYGIKARNGDSLEVPQYFWMRIAMGLSLNETDPTSHAI 260 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 FY+ +S ++ + TL N+GT +PQLS+CF+ + DD+ I ++++ L K +GG+ Sbjct: 261 AFYHKMSKLEYLAAGSTLVNAGTAYPQLSNCFVMEMQDDIEHIAKSVRDVMWLTKGTGGI 320 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G T +R G+ I N S G IPF+ + AV++GGK+ GA+C Y+E WH+D Sbjct: 321 GLSVTKLRSQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALCFYMENWHLDFP 380 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLDLR+N+GD RRT NTA W D FMKRV + W LF P EV+DL++LYGK F Sbjct: 381 EFLDLRQNSGDPYRRTRTANTAVWTSDEFMKRVQNDQDWYLFDPLEVADLNELYGKAFSE 440 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 Y Y A+ GE+++F+KISA A ++ +L L T HPW+T+KD N R+ + G +H Sbjct: 441 RYAEYAVMAEAGELRMFKKISARAQFKDILMSLQTTSHPWLTWKDTINNRALNNNTGAIH 500 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANN------QFDYDKLASTIRTAVRVLDN 634 SNLCTEITL + +VCNL SINL H + + D+ +L + R AVR LDN Sbjct: 501 LSNLCTEITLPQDRDNVSVCNLASINLSRHLVDGERANGLEMDWARLEESARQAVRQLDN 560 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 +IDI ++ +A SN +RAIGLG+MGF + L Y S EA + DE ME +S+ A Sbjct: 561 LIDITVSSVPEADFSNQQNRAIGLGVMGFTDVVERLGFSYESEEAYALIDEIMEHVSYAA 620 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRV 753 I S +LAQERGAY +F+GS W QG+ P DSI L R + ++RT RL WD L+++V Sbjct: 621 IDESADLAQERGAYPNFEGSRWSQGLVPYDSIALAEADRGIPITVDRTIRLDWDRLREKV 680 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 GMRN+ MAIAPTA+I + G + DP + ++ +S SG F VN LV L++R Sbjct: 681 -KGGMRNATLMAIAPTASIGLVAGTTPGFDPQFSQIFSRSTSSGKFLEVNRNLVEALQER 739 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW E + G I I IPD++K T+F++ P IE A+R QKWIDQA S Sbjct: 740 GLW-EETRESILRSQGDIQGIAAIPDEIKAAFKTSFQLSPHAFIEVAARAQKWIDQAISR 798 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 N+YL+ + IY AW G+KTTYYL + E+ST+K + Sbjct: 799 NMYLETRDIGDMMDIYAAAWEKGVKTTYYLHMKPRHQAEQSTVKVNKSE 847 Score = 43.3 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 13/107 (12%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKG----VQVIKRNGGVTSFDPSKISRAIMKAFMAV 57 ++ +G E A +G + V+KRNG +D +KI+ AI A + Sbjct: 31 RDARTCPRGAEAVSHDFAARPSGTHRGENVAITVVKRNGEREPYDANKINLAIEHAAAGL 90 Query: 58 EGKGASRSIRVQD---------IIKNLTEQTVTRLLQHNKSALIVHI 95 + + + + L E + LQ+ K I Sbjct: 91 DENITWVTQIASELELTLFDGITTQQLDEAVIQVALQNVKDDPAFDI 137 >gi|302867101|ref|YP_003835738.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora aurantiaca ATCC 27029] gi|302569960|gb|ADL46162.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora aurantiaca ATCC 27029] Length = 798 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 315/821 (38%), Positives = 451/821 (54%), Gaps = 43/821 (5%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 P +++ DG + ++ VE + L +V V ++T +YDG + ++L Sbjct: 16 ETRRPAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAEL 75 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + I ++ LI +EP Y+K+ AR L + +EV Y Sbjct: 76 DRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQ------GVASFSQSIAYAHGLGL 129 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEM 316 + L + + + D FEY GL+ + DRY L SR +E Sbjct: 130 I-------GDETAGFVARHARKLDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLVVET 182 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ + +RVA GL+ E FY L+SS ++ S+PTLFNSGTRH Q+SSCFL Sbjct: 183 PQYWLLRVACGLSRTPGEAVG----FYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFLVDS 238 Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 P D+L I+ + A L+K+SGG+G W+ VRG GA I GTNG+S G++PFLK + Sbjct: 239 PRDELDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLDAGV 298 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 AVNQGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV Sbjct: 299 AAVNQGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEA 358 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W+L P + +L DLYG+ F+ AY E+ A R + A L+ +M+ L + Sbjct: 359 DGEWSLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRTLAQ 411 Query: 556 TGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG+ W+TFKD N S Q V+H SNLCTEI + ETAVCNLGS+NL AH Sbjct: 412 TGNGWMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVTA 471 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + D+++L +T+RTAV LD VIDIN + E+A SN R +GLGLMG Q A L +P Sbjct: 472 DGVDWERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLP 531 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S +A E++ E I A+ S LA+ G + ++ + +G D G Sbjct: 532 FDSAQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEPAQA 591 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 W L++R+ G+RNS +AIAPTATIA+I G + ++P NL+ + Sbjct: 592 GR----------WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRE 641 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 MSG+F VN++LV ELK R LW + +K +GS+ +I +P ++++ TA+E+ Sbjct: 642 TMSGEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQ 701 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 LI+ A+ R +IDQ+QSLNL+L P+ KL +Y AW GLKTTYYLRSR AT +++ Sbjct: 702 RALIDLAAARAPFIDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQ 761 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +T+ V ++ V + + S + CE CQ Sbjct: 762 ATVAPVLAPVSGVVSA----VSDDEALACSLENPESCEACQ 798 Score = 43.7 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52 +++ PS + ++V KR+G D KI RA+ + Sbjct: 5 QESPPSGTGGSETRRPAMRVRKRDGDTEPVDVGKIVRAVER 45 >gi|145497945|ref|XP_001434961.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124402089|emb|CAK67564.1| unnamed protein product [Paramecium tetraurelia] Length = 840 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 266/824 (32%), Positives = 439/824 (53%), Gaps = 41/824 (4%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 H + A ++ DG + + +++ ++ S LQ ++ +++ + + MY+G Sbjct: 10 EHLQELAKQKNISYVLKRDGGKQNIDIQKIAERLQNLASNLQHININLIMWKVIQGMYEG 69 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ L+ + + P Y+ + AR + L +E + + K Sbjct: 70 ITTVQLDNLAAETCAYMNLVHPQYSLLAARIAVNNLHKETSESFSEVATKLHSFT----- 124 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 +Y ++ + + N++ Y+RD+ +++ G + L Y L Sbjct: 125 ----DKYGRPAPLIADDVYKIIMENKDIIQNEINYDRDYQYDFFGFKTLERSYLLKEGKK 180 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 IE PQ MRV++G+ E + A + Y+L+S +F +TPTLFNSGT +PQ+SSCF Sbjct: 181 PIERPQQLLMRVSIGIH---KEDLQSAFQTYHLMSQKYFTHATPTLFNSGTPYPQMSSCF 237 Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L + D + GI+ L+ A+++K +GG+G + +R ++I GTNG S G++P LKV Sbjct: 238 LLDMVDDSIEGIYETLKRCALISKSAGGIGLSASKIRSQDSYIRGTNGISNGLVPMLKVF 297 Query: 432 NDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 NDTA V+QGG KRKG+ YLE WH D+ FL LRKN G + +R D+ WIPDLFM Sbjct: 298 NDTARYVDQGGGKRKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFM 357 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV ++ WTL P+E L D YG+EF Y +YE + +V + A LW++++ Sbjct: 358 QRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYTDYESKNM---GRV--TMKARQLWQEII 412 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 TG P++ +KD CN +S Q+++G + SSNLCTEI +S +E AVCNL SINL Sbjct: 413 DAQISTGLPYMLYKDACNSKSNQKNLGTIKSSNLCTEIIQYTSPDEIAVCNLASINLQKL 472 Query: 611 FANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 ++ FD+DKL + L+ VID+N + +++A+ SN +R IG+G+ GF AL Sbjct: 473 IKEDKTFDFDKLLEITKIITINLNIVIDLNFYPVKQAEYSNKRNRPIGIGVQGFADALQR 532 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + IP+ S +A+E+ + E I + A S+ELAQ+ G Y +F GS QG+ D G+ Sbjct: 533 MKIPFDSEDALELNAKIFETIYYGACQTSLELAQKLGPYETFTGSPASQGILQFDMWGVS 592 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ LK+ + GMRNS +A PTA+ + I ++S +P N+ Sbjct: 593 PK-----------LYDWNTLKQNIAKHGMRNSLLIAPMPTASTSQILQNNESFEPYTTNI 641 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + ++G+F +N LV++L + +LW + + L ++GS+ NIE IP+++K ++ T + Sbjct: 642 YTRRVLAGEFVCINPHLVDDLIELNLWTPQIKNKLIMNNGSVQNIEEIPNNIKSLYKTVW 701 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMG----------LKT 899 EI ++ A+ R +IDQ+QSLN+++ EP+ K+ ++ A G +K Sbjct: 702 EISQKAILNLATSRAPFIDQSQSLNIHMAEPTMSKVTSMHFYAGRKGVKNRYILYITIKG 761 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 YYLR+R A K T+ + +S + +S Sbjct: 762 MYYLRTRPAADPIKFTVDVEALLKEGGQIKIQSSKQELIDESAS 805 >gi|315506489|ref|YP_004085376.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. L5] gi|315413108|gb|ADU11225.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. L5] Length = 798 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 316/824 (38%), Positives = 456/824 (55%), Gaps = 49/824 (5%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 P +++ DG + ++ VE + L +V V ++T +YDG + ++L Sbjct: 16 ETRRPAMRVRKRDGDTEPVDVGKIVRAVERWVADLDEVDPLRVATKTISGLYDGATTAEL 75 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + I ++ LI +EP Y+K+ AR L + +EV F + Sbjct: 76 DRLSIQTAAELIGEEPQYSKLAARLLAAYVDKEVRGQGVAS----------------FSQ 119 Query: 259 YIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313 I L+ + F L + + + D FEY GL+ + DRY L SR Sbjct: 120 SIAYAHGLGLIGDETAAFVARHARKLDDAVDPDGDLRFEYFGLRTVADRYLLRHPQSRLV 179 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +E PQ + +RVA GL+ E FY L+SS ++ S+PTLFNSGTRH Q+SSCFL Sbjct: 180 VETPQYWLLRVACGLSRTPGEAVG----FYRLMSSLAYLPSSPTLFNSGTRHTQMSSCFL 235 Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P D+L I+ + A L+K+SGG+G W+ VRG GA I GTNG+S G++PFLK + Sbjct: 236 VDSPRDELDSIYERYHQVAKLSKFSGGIGISWSRVRGRGALIRGTNGRSNGIVPFLKTLD 295 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 AVNQGG+RKGA C YLE WH DVEEFL+LR NTG++ RRTH++N ANW+PD FM+R Sbjct: 296 AGVAAVNQGGRRKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRR 355 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + W+L P + +L DLYG+ F+ AY E+ A R + A L+ +M+ Sbjct: 356 VEADGEWSLVDPSDAPELPDLYGEAFDAAYRAAEKNA-------VRTVRARDLYGRMMRT 408 Query: 553 LFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 L +TG+ W+TFKD N S Q V+H SNLCTEI + ETAVCNLGS+NL AH Sbjct: 409 LAQTGNGWMTFKDAANRLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAH 468 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+++L +T+RTAV LD VIDIN + E+A SN R +GLGLMG Q A L Sbjct: 469 VTADGVDWERLRATVRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTL 528 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +P+ S +A E++ E I A+ S LA+ G + ++ + +G D G Sbjct: 529 RLPFDSAQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEP 588 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 W L++R+ G+RNS +AIAPTATIA+I G + ++P NL+ Sbjct: 589 AQAGR----------WAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLF 638 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + MSG+F VN++LV ELK R LW + +K +GS+ +I +P ++++ TA+E Sbjct: 639 KRETMSGEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWE 698 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + LI+ A+ R ++DQ+QSLNL+L P+ KL +Y AW GLKTTYYLRSR AT Sbjct: 699 LPQRALIDLAAARAPFVDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKTTYYLRSRPATR 758 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 ++++T+ V ++ V + + S + CE CQ Sbjct: 759 IQQATVAPVLAPVSGVVSA----VSDDEALACSLENPESCEACQ 798 Score = 43.7 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 20/41 (48%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMK 52 +++ PS + ++V KR+G D KI RA+ + Sbjct: 5 QESPPSGTGGSETRRPAMRVRKRDGDTEPVDVGKIVRAVER 45 >gi|195456500|ref|XP_002075166.1| GK23355 [Drosophila willistoni] gi|194171251|gb|EDW86152.1| GK23355 [Drosophila willistoni] Length = 768 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 277/787 (35%), Positives = 414/787 (52%), Gaps = 36/787 (4%) Query: 162 LEMIVEEACSGLQ------DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215 + + + G+ V + + +Y G++ +L+ + L + Sbjct: 8 IRCVAFRSSRGIDIGFSAIPVLEVSITLQVINGLYCGVTTQELDNLAAEIAAGLTCNHAD 67 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 YA + AR + L +E +K + LY H +++ Sbjct: 68 YAILAARIAVSNLHKET--------KKVFSEVFEELYHHVNKETNNPSPMVSSYHYNIVK 119 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK 335 + L + + Y+RDF + Y G + L Y L ING E PQ MRVA+G+ E Sbjct: 120 NNADRLNSAMIYDRDFGYNYFGFKTLERSYLLKINGKVAERPQHMLMRVAIGIHG---ED 176 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 AVE YNLLS +F ++PTLF + T PQLSSCFL T+ D + GIF +++ AM++ Sbjct: 177 IDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTSDSIEGIFKTVEQCAMIS 236 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLE 453 K +GG+G + +R G I GTNG S G++P L+V N+ A V+QGG KR GA YLE Sbjct: 237 KSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIYLE 296 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+ EFLDL++NTG + R D+ A WIPDLFMKRV N W+L P + L D+ Sbjct: 297 PWHSDIFEFLDLKRNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMCPHKCPGLEDV 356 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G +FE Y YE++ I + A +LW ++ ETG+P++ FKD CN +S Q Sbjct: 357 WGDKFEELYVKYEKEGLANRI-----VKAQSLWFAIIESQVETGNPYMLFKDSCNKKSNQ 411 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVL 632 Q+VG + SNLCTE+ S+ +E AVCNL SI L + +D+ KL + + L Sbjct: 412 QNVGTIKCSNLCTEVVEYSAPDEIAVCNLASIALNMFVTTDKTYDFKKLKEVTKIVAKNL 471 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +ID+N + + +AKKSN HR IG+G+ G AL L+ +PY S +A + + E I F Sbjct: 472 NKIIDVNYYPLPEAKKSNLKHRPIGIGVQGLADALILMRLPYESKQACLLNQQIFETIYF 531 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ AS ELAQ G Y +FKGS +G+ D + W++LK Sbjct: 532 GALEASCELAQMYGPYETFKGSPASRGILQYDMWNKKP----------SDLWDWNKLKAA 581 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 +K G+RNS +A PTA+ A I G ++S +P N+Y + +SG+F VVN L+ +L + Sbjct: 582 IKEHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTE 641 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 DLWD+ M + + GSI NIE IP +++ ++ T +EI I+ A+ R +IDQ+QS Sbjct: 642 LDLWDDDMKNKIVSSRGSIQNIEVIPQNVRDLYKTVWEISVKSTIKMAADRGAFIDQSQS 701 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 N+++ EP+ KL I+ +W GLKT YYLR++ A + T+ Sbjct: 702 FNIHVAEPNYGKLTSIHFYSWKSGLKTGMYYLRTKPAAHAIQFTVDKNASATIISSQNGS 761 Query: 932 NSSTHSL 938 + Sbjct: 762 IKAEKKC 768 >gi|290984045|ref|XP_002674738.1| ribonucleotide reductase [Naegleria gruberi] gi|284088330|gb|EFC41994.1| ribonucleotide reductase [Naegleria gruberi] Length = 812 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 276/824 (33%), Positives = 444/824 (53%), Gaps = 34/824 (4%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I+ G F+S+++ + +++ L ++ ++ + +++ ++ L+ + Sbjct: 4 IVKKSGEKELFSSEKIRIRLQDHTKDLYHINIDSIIEKLQLEIHNDITTEKLDNLIAECI 63 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 + P+Y K+ R + L + + + + R Sbjct: 64 AYMAYSHPDYLKLAGRVKVSTLHKHTKSKFSEVVHDLRNF--------IHPRTNLPSPLI 115 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 +++ ++ L +K ERDF F+Y G + L Y L + E PQ FMRV+ Sbjct: 116 SEEVFNVVAANVDVLDQAIKSERDFQFDYFGYKTLERSYLLKLADSRIAERPQHMFMRVS 175 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384 +G+ + E+ A++ Y+LLSS F+ ++PTLFN+GT PQ+SSCFL ++ DD ++GI+ Sbjct: 176 LGIHGGDIER---AIQTYDLLSSGMFIHASPTLFNAGTPIPQMSSCFLVSMKDDSIHGIY 232 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443 L+ A+++K +GG+G +R G++I GTNG S G+IP L+V NDTA V+QGG K Sbjct: 233 DTLKTCALISKSAGGIGLSVHNIRASGSYIRGTNGTSNGLIPMLRVFNDTARYVDQGGGK 292 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGA YLE WH D+ +FLDLRKN G + R D+ W+ DLFM+RV +A W+LF Sbjct: 293 RKGAFAIYLEPWHSDIFDFLDLRKNHGKEEIRARDLFLGLWVNDLFMQRVKDDAEWSLFC 352 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+E L D++G+EF Y YER E K R I A LW ++ ETG P++ + Sbjct: 353 PNEAQGLADVWGEEFNQLYTKYER-----EGKAKRTIKAQELWFAIIEAQIETGVPYMLY 407 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKL 621 KD CN +S QQ++G + SSNLCTEI ++ +E AVCNL SI L + +D+ KL Sbjct: 408 KDSCNRKSNQQNLGTIKSSNLCTEIIEFTAPDEVAVCNLASIALPKYVNEETQTYDHQKL 467 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 ++ A L+ +ID N + +E+AKKSN HR IGLG+ G A + +P+ S EA Sbjct: 468 YEVVKIATYNLNKIIDKNYYPVEEAKKSNFRHRPIGLGVQGLADAFIKMRLPFESEEAKN 527 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E I F A++ S+ELA+ G Y +++GS +G+F + E + + + Sbjct: 528 LNREIFETIYFAAMTCSMELAKVEGTYETYEGSPISKGIFQHEFWTREGEPFEGKTI-TS 586 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R W+ L+++V G+RNS +A PTA+ + I G ++ +P N+Y + +SG++ V Sbjct: 587 GRWDWEGLRQQVLQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNVYTRRVLSGEYPV 646 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +N LV +L + D+W+ +++ + + GSI NI+ IPDD+K+++ T +EI L++ A Sbjct: 647 INRHLVADLIKIDMWNPTIVNQIIGNRGSIQNIQGIPDDIKELYKTVWEIKQRSLLDLAI 706 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLN+++ PS K+ ++ AW GLKT YYLR++ A + T+ Sbjct: 707 ERSPFIDQSQSLNVFISIPSVSKMSSMHFYAWSKGLKTGMYYLRTQPAADAIQFTVDPNM 766 Query: 921 GKLNAVPVTDPNSSTHSL-----------GIPSSCTSDTECEVC 953 K + P + EC VC Sbjct: 767 MKQSVSTSQAEEPKQEEEVIVCKRKKRGQAPPEGEEDEEECLVC 810 >gi|320581724|gb|EFW95943.1| ribonucleotide reductase large subunit Rnr1 [Pichia angusta DL-1] Length = 816 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 284/839 (33%), Positives = 433/839 (51%), Gaps = 52/839 (6%) Query: 141 IAPKLKIMMDD--GTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSES 196 A I+ D G F+ L + GL + VS ++L + + + L+ Sbjct: 2 TADTKTIVKDSKSGKESVFSRDILRNHLLSLAQGLNTEFVSIDVILDKVVSGLPESLTVQ 61 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L S +L +++ + AR L+ L+++V + + + + F Sbjct: 62 ELLDLTAEVSASLTTVHYDHSYLAARVLVRHLQKQVCGSFSENVNRMRQYRPSQY--RSF 119 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 I V +++ L + ++RD +Y G + + Y L ++G E Sbjct: 120 KSLIAADVH------EIVNKHADVLNKAIDFDRDLELDYFGFRTMERSYLLKMDGRPCET 173 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 PQ FMRVA+G+ E+ +E Y L+S +F+ ++PTLFN+GT P LSSCFL + Sbjct: 174 PQYLFMRVAVGIHKGNIERV---LETYRLMSQKYFIHASPTLFNAGTETPNLSSCFLLAM 230 Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D + GIF + ++A+++K +GG+G + +R G++I GTNG S G++P ++V N TA Sbjct: 231 DGDSINGIFRTIHKSALISKAAGGIGIHVSNIRAAGSYISGTNGTSNGLVPMVQVFNSTA 290 Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+QG KR GA C YLE WH DV EFLDLRKN G + R D+ A WIPDLFM++V Sbjct: 291 KYVDQGGNKRPGAFCMYLEPWHADVFEFLDLRKNHGKEETRARDLFYALWIPDLFMEKVE 350 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LFS D+ L D YG EF Y YER E + RK+ A LW +L Sbjct: 351 KDQEWCLFSEDQSPGLSDSYGDEFVKLYNRYER-----EGRYIRKVRAQKLWHAILVAQT 405 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETG+P++ +KD CN +S QQ++G + SSNLC EI SS+EETAVCNLGS+ L + +N Sbjct: 406 ETGNPFLLYKDACNKKSNQQNLGTIKSSNLCCEIVEYSSNEETAVCNLGSLALPSFVHDN 465 Query: 615 Q----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + FD+ L +T R LD VID+ + + +A+ SN HR I +G+ G L Sbjct: 466 KGERKFDFKFLHDVCKTLARNLDTVIDVGSYPLPEAEVSNKRHRPIAIGVQGLADVFFKL 525 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +P+ SPE+ ++ E I A+ S ELA+ G Y S+ GS +GV D Sbjct: 526 RMPFGSPESRKLNILIFETIYHAALETSAELAEIYGPYDSYAGSPISKGVLQYDFWNAKP 585 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + W+ LK ++ G+RNS +A+ PTA+ + I G ++ +P N+Y Sbjct: 586 ----------SDMWDWEGLKAKIHRNGVRNSLLVALMPTASTSQIFGFTECFEPITSNMY 635 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VVN +L+++L LW M +++ +GS+ IE IP D K+I+ T +E Sbjct: 636 SRRVLSGEFQVVNRYLIDDLVDLGLWGPEMKNEILRMEGSVQAIESIPADTKEIYKTVWE 695 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I LI+ A+ R +IDQ+QS+NL++ P+ KL ++ AW GLKT YYLR+++A Sbjct: 696 IQQRALIDMAADRAPFIDQSQSMNLFMRNPTMSKLTSMHFYAWKKGLKTGIYYLRTQAAA 755 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI---------------PSSCTSDTECEVC 953 S K T+ K + D S G C+ C Sbjct: 756 SAIKFTVTPSRFKRSISESRDTTKRRKSNGNEVTEGYNIYDKDNVLACKVGDPETCDAC 814 >gi|238061573|ref|ZP_04606282.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. ATCC 39149] gi|237883384|gb|EEP72212.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora sp. ATCC 39149] Length = 792 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 317/831 (38%), Positives = 458/831 (55%), Gaps = 49/831 (5%) Query: 129 RAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN 188 R Q+ + +++ +G + ++ VE + L +V V ++T Sbjct: 6 RQEQTAAHQPEQRRQVMQVRRRNGDAEPVDVNKIVKAVERWVADLDEVDPLRVATKTISG 65 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +YDG + ++L+ I ++ LI +EP Y+K+ AR L + +EV + Sbjct: 66 LYDGATTAELDKLSIQTAAELISEEPQYSKLAARLLAAYVDKEVRGQ------QVASFSQ 119 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Y ++ + + + L + + D FEY GL+ + DRY L Sbjct: 120 SVRYAHGLGLIGDD-------TAAFVARNARKLDDAVDPAGDLRFEYFGLRTVADRYLLR 172 Query: 309 INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 SR +E PQ + +RVA GL+ E A+ FY L+SS ++ S+PTLFNSGTRH Sbjct: 173 QPESRLVVETPQYWLLRVACGLSETPAE----AIGFYRLMSSLAYLPSSPTLFNSGTRHT 228 Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 Q+SSCFL P D+L I+ + A L+K+SGG+G W+ VRG GA I GTNG+S G++ Sbjct: 229 QMSSCFLVDSPRDELDSIYERYHQVAKLSKFSGGIGIAWSRVRGRGALIRGTNGRSNGIV 288 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 PFLK + AVNQGG+RKGA C YLE WH D+EEFL+LR NTG++ RRTH++N ANWI Sbjct: 289 PFLKTLDAGVAAVNQGGRRKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWI 348 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PD FM+RV + W+L P + +L DLYG+EF+ AY E+ K R + A L Sbjct: 349 PDEFMRRVEADGDWSLIDPSDAPELPDLYGEEFDAAYRIAEK-------KAIRTVKARDL 401 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLG 603 + +M+ L +TG+ W+TFKDP N S Q +H SNLCTEI +S ETAVCNLG Sbjct: 402 YGRMMRTLAQTGNGWMTFKDPSNRLSNQTGVPGNTIHLSNLCTEILEVNSDTETAVCNLG 461 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL AH + D+ KL ST+RTAV LD VIDIN + +A SN R +GLGLMG Sbjct: 462 SINLGAHVTVDGVDWVKLRSTVRTAVVFLDRVIDINYYPATQAAASNPRWRPVGLGLMGL 521 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q A L +P+ S A E++ E I A+ S L++ G + ++ + +G Sbjct: 522 QDAFFTLRLPFDSAAARELSTRVQEEIFLTALETSAGLSERFGPHPAYAETRAARGELHP 581 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D G+ T W L+ + G+RNS +AIAPTATIA+I G + I+ Sbjct: 582 DLWGVEP----------TQTERWAALRATIAAHGLRNSLLVAIAPTATIASIAGCYECIE 631 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P NL+ + MSG+F +N++LV ELK LW + +K +GS+ I+ +P D+++ Sbjct: 632 PQVSNLFKRETMSGEFLQINTYLVRELKAHGLWTPQIRDQIKRAEGSVQGIDDLPADVRE 691 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYL 903 + TA+E+ LI+ A+ R +IDQ+QSLNL+L P+ KL +Y AW GLKTTYYL Sbjct: 692 LFRTAWELPQRTLIDLAAARAPYIDQSQSLNLFLSAPTIGKLSSMYLYAWKSGLKTTYYL 751 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 RSR AT ++++T+ V + + + + S + CE CQ Sbjct: 752 RSRPATRIQQATV----------AVKPVVAVSDTEALACSLENPESCEACQ 792 >gi|255587584|ref|XP_002534320.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] gi|223525502|gb|EEF28063.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] Length = 776 Score = 641 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 275/779 (35%), Positives = 425/779 (54%), Gaps = 51/779 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ +++ GL +V + +Y G++ S L+ Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSMDHCDPVLVSQKVCAGVYKGVTTSQLDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR ++ L + +K+ ++ +Y + R + Sbjct: 61 AETAAAMTANHPDYASLAARIVVSNLHKNT--------KKSFSETIKVMYNHFNERSGLK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 113 APLIADDVYNIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + ++ Y+L+S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVAVGIH---KDDIDSVIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E A+++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLKECAVISKSAGGIGVSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A W+PDLFM+RV N W+ Sbjct: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 +F P+E L D +G+EFE Y YER E K + + A LW ++L ETG P+ Sbjct: 350 VFCPNEAPGLADCWGEEFERLYTQYER-----EGKAKKVVQAQNLWFEILKSQIETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--------- 611 + FKD N +S QQ++G + SSNLCTEI +S ETAVCNL SI L Sbjct: 405 MVFKDTSNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPMES 464 Query: 612 -----------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 N FD+DKLA L+ +ID+N + +E AK+SN HR IG+G+ Sbjct: 465 HPSKVVGSRGSKNRYFDFDKLAEVTEVVTCNLNKIIDVNYYPVENAKRSNFRHRPIGIGV 524 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G A LL + + SPEA ++ E E I +HA+ AS E+A G Y ++ GS +G+ Sbjct: 525 QGLADAFILLGMAFDSPEAQQLNKEIFETIYYHALKASSEIAGRDGPYETYDGSPVSKGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D G+ +SR W+ L++ + G+RNS +A PTA+ + I G ++ Sbjct: 585 LQPDMWGVTP----------SSRWSWNALREMIFKNGVRNSLLVAPMPTASTSQILGNNE 634 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 +P N+Y + +SG+F VVN L+++L + LW + + + Y DGS+ I IPDD Sbjct: 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPDD 694 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW-LMGLK 898 LK I+ T +EI L++ A R +IDQ+QSLN+++D+P+ KL ++ AW + LK Sbjct: 695 LKLIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKLFLK 753 >gi|118346189|ref|XP_976850.1| Ribonucleotide reductase, barrel domain containing protein [Tetrahymena thermophila] gi|89288340|gb|EAR86328.1| Ribonucleotide reductase, barrel domain containing protein [Tetrahymena thermophila SB210] Length = 2928 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 275/823 (33%), Positives = 430/823 (52%), Gaps = 32/823 (3%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMY 190 A I+ ++ + R++ +E L V+ +++ + MY Sbjct: 2074 EELTELAKSKGIHHIINRKNEKMNLDLIRIKERLEALTFNLDRNFVNMDLIIQKVVNGMY 2133 Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 DG+ ++L+ ++ + P+Y+ AR + L +E ++ ++ Sbjct: 2134 DGIHTTELDELAAETAAYMTIIHPHYSLFAARIAVSNLHKETSSSFFETISALY------ 2187 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 Y + + ++ + + + Y+RD+ +++ G + L Y L I+ Sbjct: 2188 ---NYVDKSGRQAGLIAKDVYEIVKENAEAIEKVINYDRDYTYDFFGFKTLERSYLLKIH 2244 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 G E PQ MRV++G+ + A YNL+S F +TPTLFNSGT PQ+SS Sbjct: 2245 GKIAERPQHMLMRVSIGIH---KRDLESAFRTYNLMSEKWFTHATPTLFNSGTPKPQMSS 2301 Query: 371 CFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL + D + GI+ L+++A+++K +GG+G +R ++I GTNG S G++P L+ Sbjct: 2302 CFLLQMKGDSIEGIYDTLKQSALISKSAGGIGISVHNIRARDSYIRGTNGISNGLVPMLR 2361 Query: 430 VANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 V NDTA V+QGG KRKG+ YLE WH D+ EFL L+KN G + +R D+ A WIPDL Sbjct: 2362 VFNDTARYVDQGGGKRKGSFAIYLEPWHSDIFEFLQLKKNHGKEEQRARDLFYALWIPDL 2421 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV + WTL P+E L D++G EFE Y YE E K + I+A LW+ Sbjct: 2422 FMKRVISDGTWTLMCPNECPGLPDVWGDEFEALYTKYEN-----EGKGRKTINARELWQD 2476 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 ++ ETG P++ +KD CN +S QQ++G + SSNLCTEI +S +E AVCNL SI+L+ Sbjct: 2477 IVDSQIETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIIEYTSPDEVAVCNLASISLV 2536 Query: 609 AHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 N ++DY KL + L+ VID N + + +AK SN HR IG+G+ G A Sbjct: 2537 KFVKENGEYDYQKLYEISKVVTFNLNKVIDENYYPVIEAKNSNMRHRPIGIGVQGLADAF 2596 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + I + S EA + ++ E I F A AS+E+A + G Y +FKGS +G D Sbjct: 2597 IKMRISFESDEAQIVNEKIFETIYFGACEASMEIAIKEGPYETFKGSPASKGQLQFDLWN 2656 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + WD LK+++ GMRNS ++ PTA+ + I G +S +P Sbjct: 2657 YKPHLCGY---------DWDGLKQKIVEHGMRNSLLISPMPTASTSQILGNCESFEPYTS 2707 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 NLY + ++G+F +N LV +L +R+LW+ ++ + L +GS+ + IPDD+K+++ T Sbjct: 2708 NLYTRRVLAGEFVCINPHLVQDLIERNLWNPSIKNQLLAFNGSVSQVPDIPDDIKQLYKT 2767 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 +E+ +I A R +IDQ+QSLN+++ +PS K+ ++ AW GLKT YYLRSR Sbjct: 2768 VWEVSQKAIINLAVGRSPFIDQSQSLNIHISDPSYSKITSMHFYAWEKGLKTGMYYLRSR 2827 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 A K TL A + N + + E Sbjct: 2828 PAADPIKFTLDVESLLREAGSINVQNINGKRKQDDLQELENPE 2870 >gi|269105082|ref|ZP_06157777.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268160717|gb|EEZ39215.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 729 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 276/788 (35%), Positives = 430/788 (54%), Gaps = 65/788 (8%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228 GL+ V V +YDG+ ++++ L ++ +L + P+YAK+ AR ++ L Sbjct: 2 LADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSL 60 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 ++E + + + Y ++ + + L + + Y+ Sbjct: 61 QKETSGYATATRELSEIGILSSAYVDFVAK------------------NQFALEDMIDYK 102 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD+ F+Y G + L Y L + G +E PQ FMRVA+ +A + + E Y+LLS Sbjct: 103 RDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDD---LEEIRELYDLLSL 159 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 ++ +TPTLFN+G + QLSSCFL + D + GI+ L++ A+++K +GG+G + Sbjct: 160 CYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNI 219 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R GA I GTNG S G++P LKV N+TA V+QGG KRKG+ YLE WH D+E FLDLR Sbjct: 220 RATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLR 279 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KN G + R D+ A W+PDLFM+RV +A WTLFSP L DLYG EF Y+ YE Sbjct: 280 KNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYE 339 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 R + I A L +++ ETG P++ +KD CN +S Q+++G + SSNLC Sbjct: 340 RMGL-----GVKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCA 394 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 EI S+ +ETA CNL S+ L N FD+DKL + A++ LD VID+N H +K Sbjct: 395 EIMEVSTPDETAACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKI 454 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 +KSNH HR +GLG+ G +H+P+ S EA+ + + E + ++ AS E+A+++G Sbjct: 455 EKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKG 514 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 YSS+ GS G F D +SR W +LK ++ G+RNS +A Sbjct: 515 TYSSYDGSPISHGQFQFDLWCEQP----------SSRWDWSQLKHQIAEHGVRNSLLIAQ 564 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTA+ A I G +++ + N+Y + +SG+F ++N +LV++L+QR LW + + Sbjct: 565 MPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIIL 624 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 ++GS+ I+ IPDDL+ ++ T +EI +I+ ++ R ++ Q+QSLNL+L P+ +++ Sbjct: 625 NNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQIN 684 Query: 887 FIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 ++ AW GLKT YYLRS+ +T+ K T+ + Sbjct: 685 AMHFYAWKRGLKTGMYYLRSKPSTNAVKVTVGQQ-------------------------S 719 Query: 946 SDTECEVC 953 D +C C Sbjct: 720 EDEDCLNC 727 >gi|299472902|emb|CBN80471.1| EsV-1-180 [Ectocarpus siliculosus] Length = 766 Score = 635 bits (1638), Expect = e-179, Method: Composition-based stats. Identities = 255/794 (32%), Positives = 412/794 (51%), Gaps = 41/794 (5%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200 + I DG + ++ +++ C GL V + + +Y G++ ++L+T Sbjct: 2 ESMYITKRDGRKENVLFDKISARIKKLCYGLDSRYVDHVAIAQKVISGVYAGVTTTELDT 61 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 ++ + P+Y+ + R + L +E + + + M + Sbjct: 62 LAAETAAYMAISHPDYSLLAGRIAVSSLHKETKESFVETMADLHDYGM-----------V 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + V A + + L + Y +D +++ + L Y L I+G+ +E Q Sbjct: 111 ADDVHAAI------QDNAHLLDGAIDYGKDLEYDFFAFKTLEKSYLLKIDGNIVERIQHM 164 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 MRVA+G+ + + ++ Y LS +TPTLFN+GT + QLSSCFL + DD Sbjct: 165 LMRVAVGIH---KDDIESVLDTYTELSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDS 221 Query: 381 -YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 GI+ L++ A ++K++GG+G + +R G++I GTNG S G++P L+ TA +N Sbjct: 222 VDGIYDTLKQTAKISKFAGGIGLSVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFIN 281 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G+RKG+ YLE WH D+ EFLDL+KN G++ R D+ W+ DLFM RV + W Sbjct: 282 QAGRRKGSFAMYLEMWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMHRVKADGDW 341 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TL SP + DL DL+G +F+ AYE YE + + I A L+ K++ ETG P Sbjct: 342 TLLSPSDAPDLIDLHGADFDRAYEKYESDG------IGKTIKARTLFAKVVESQIETGGP 395 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDY 618 + FKD CN +S QQH+G + SSNLC E+ SS EE AVCNL SINL+ H ++ FD+ Sbjct: 396 YYLFKDSCNAKSNQQHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVKPDKTFDF 455 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L T + A++ L+ VID N + +E+ SN HR GLG+ ++ P+ S E Sbjct: 456 ERLHKTAKQAIKNLNKVIDANFYPLEECSLSNMKHRPCGLGVQALHDVFMVMGFPFESEE 515 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I ++ AS+E A+ G Y SF+GS G D G + Sbjct: 516 AATLNKQIFETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWGHEVDD------ 569 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-ANICGVSQSIDPSYQNLYVKSNMSG 797 SR W +++ +KT GMRNS A+ PTA+ + G +++ + S LY + +SG Sbjct: 570 ---SRHDWTKIRGDLKTYGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSG 626 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F +VN +L+ EL + LWD M + + GS+ IE IP+ + + +E+ +I Sbjct: 627 EFPIVNKYLIRELIKLGLWDGEMKNAIIRGGGSVQGIESIPEKTRMLFKNVWEVSQKAVI 686 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 E A+ R +IDQ+QS+N++ + P+ K+ W +GLKT +YY+RSR + T+ Sbjct: 687 EQAAARGPYIDQSQSMNIFFERPTVAKISSALFYGWKLGLKTASYYVRSRPVADPVQFTV 746 Query: 917 KGVDGKLNAVPVTD 930 + + + Sbjct: 747 SPEEPVGDEEDDKE 760 >gi|171399|gb|AAA34569.1| ribonucleotide reductase DNA damage-inducible regulatory subunit [Saccharomyces cerevisiae] Length = 756 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 253/785 (32%), Positives = 402/785 (51%), Gaps = 40/785 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ + GL + + V +Y G++ +L+ Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+YA + AR + L ++ K ++ L+ + Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKV--------IEDLHDWINPATGKH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 +++ + YL + + Y+RDF + Y G + L Y L +NG E PQ M Sbjct: 113 APMISDEIYNIV-METRYLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVM 171 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + E ++ YNL+S +F ++PTLFN+GT PQ+SSCFL + DD + Sbjct: 172 RVALGIHGSDIESV---LKTYNLMSLRYFTHASPTLFNAGTPLPQMSSCFLIAMKDDSIE 228 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+E AM++K +G L +R G++I GTNG S G+IP ++V N+TA V + Sbjct: 229 GIYDTLKECAMISKTAGVLS-HINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVTRV 287 Query: 442 GKRKGAVCAYLETWHIDVEEF-LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 R + + + + + D+RK G + R D+ A WIPDLFMKRV ++ WT Sbjct: 288 VTRDLVLSPFSWSHGMQISSTKFDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWT 347 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP L D++G EFE Y YER+ + I A LW +L ETG P+ Sbjct: 348 LFSPSAAPGLDDVWGDEFEELYTRYEREGRG------KTIKAQKLWYAILQAQTETGTPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF------ANN 614 + +KD CN ++ QQ++G + SSNLC EI SS +ETAVCNL SI L A Sbjct: 402 MVYKDACNRKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTA 461 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +++++L + L+ VID N + + +A+ SN HR I LG+ G +L +P+ Sbjct: 462 SYNFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPF 521 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I + AS ELAQ+ G YS+F+GS +G+ D Sbjct: 522 ESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKP---- 577 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 W+ L+K + G+RNS MA PTA+ + I G ++ +P N+Y + Sbjct: 578 ------FGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRV 631 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VVN +L+ +L +WD++M L +GSI + +P +LK+++ T +EI Sbjct: 632 LSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQK 691 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +I A+ R +IDQ+ SLNL+L PS K+ ++ W GLKT YYLR+++A++ + Sbjct: 692 TIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQ 751 Query: 914 STLKG 918 T+ Sbjct: 752 FTIDP 756 >gi|1710392|sp|P50647|RIR1_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase R1 subunit gi|349792|gb|AAA29755.1| ribonucleotide reductase large subunit [Plasmodium falciparum] Length = 804 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 278/831 (33%), Positives = 427/831 (51%), Gaps = 51/831 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETAL 202 + ++ G + ++ ++ GL + V MY + +L+ Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+++ + AR + L + V + + ++ P I + Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYTYKDGRGRP---ASLISK 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 V +L + L ++ Y F ++Y G + L Y L IN IE PQ M Sbjct: 118 EVYDFILLHKV------RLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLM 171 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RV++G+ + + +K A+E Y+L+S +F +TPTLFNSGT PQ+SSCFL ++ D + Sbjct: 172 RVSIGIHIDDIDK---ALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIE 228 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L++ A+++K +GG+G +RG ++I GTNG S G++P L+V NDTA V+QG Sbjct: 229 GIFETLKQCALISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQG 288 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKG+ Y+E WH D+ EFLDLRKN G + R D+ A W+PDLFMKRV +N WT Sbjct: 289 GGKRKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L + +G+EFE Y YE + + + A LW +L ETG P Sbjct: 349 LMCPNECPGLSETWGEEFEKLYTKYEEENM-----GKKTVLAQDLWFAILQSQIETGVPI 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQFDY 618 +KD CN + + ++G + SNLC EI +S +E AVCNL SI L +F++ Sbjct: 404 YLYKDSCNAKPIK-NLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNF 462 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL + R LD +I+ N + +++AK SN HR IG+G+ G LL Y S Sbjct: 463 KKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYESDA 522 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A E+ E + + A+ SV+ Q G Y S++GS QG+ D + + Sbjct: 523 AKELNKRIYETMYYAALEMSVDWLQ-SGPYESYQGSPGSQGILQFDMWNAKVDNK----- 576 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 WDELK ++ G+RN +A PTA+ + I G ++S +P N+Y + +SG+ Sbjct: 577 ----YWDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGE 632 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN L+ +L R LWDE M L H+GSI I IPDDLK+++ T +EI +I+ Sbjct: 633 FFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIID 692 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLN+Y+ +P+ KL ++ W GLKT YYLR+++AT K T+ Sbjct: 693 MAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVD 752 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPS---------------SCTSDTECEVC 953 K NAV + + + + + +D +C +C Sbjct: 753 THVAK-NAVKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQCLMC 802 >gi|197322445|ref|YP_002154718.1| putative ribonucleotide reductase large subunit [Feldmannia species virus] gi|197130512|gb|ACH46848.1| putative ribonucleotide reductase large subunit [Feldmannia species virus] Length = 773 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 261/794 (32%), Positives = 411/794 (51%), Gaps = 38/794 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ + ++ V + C GL V V + +Y G++ +L+ Sbjct: 1 MYVIKRSQRRENVMFDKITTRVRKLCEGLDSDFVDPVEVTMRVNQGIYAGVTTVELDLLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+Y+ + AR L L +E + QK + Sbjct: 61 AETCAFMSTNHPDYSILAARICLSNLYKETESCYKTLVQKMR--------EYVNPETSQH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 S++ + + L + ++Y + L Y L ++G E P M Sbjct: 113 APLVSEELASVVANNSKVIQEALDEVLE-NYDYFAFKTLEKSYLLKMDGRVSERPHQLLM 171 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA+G+ + + + + + +TPTLFN+GT PQ+SSCFL T D + Sbjct: 172 RVAIGIHGHDMPNV---LRAFRDMRDKRYTMATPTLFNAGTPVPQMSSCFLMTNKADSIS 228 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF +L++ A ++KY+GG+G VR G++I GTNG S G++P L+V N+ A V+QG Sbjct: 229 GIFDSLKDCATISKYAGGIGISVHDVRARGSYIRGTNGTSNGLVPMLRVFNNAARYVDQG 288 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G +RKG+ YLE WH DV+ F+DLRKN G+D R D+ A W+PDLFMKRV +N+ W+ Sbjct: 289 GGRRKGSFAVYLEPWHADVQAFIDLRKNHGNDLERARDLFYALWVPDLFMKRVEKNSAWS 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+ G FE Y YE Q K + + A LW +++ + ETG P+ Sbjct: 349 LFCPNECPGLSDVCGSRFEDLYARYESQ-----GKARKVMDARKLWDQIVDVQVETGTPY 403 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615 I FKD N +S QQH+GV+ SSNLCTEI +S +E AVCNLGSINL + Sbjct: 404 ILFKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLGSINLSTFVRDAYTSTAS 463 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD ++L + V L+ VID N + + +A+ SN HR IG+G+ GF AL ++ +PY Sbjct: 464 FDLEELVNFAGRMVLNLNRVIDKNFYPVPEAENSNLKHRPIGIGVQGFADALVMMRLPYD 523 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S +A + E I + A+ SV LA+ G + SF+GS +QG+F D G Sbjct: 524 SVDAAGLNLNIFESIYYGAMKQSVHLARSDGGPHESFRGSPLEQGIFQFDLWG------- 576 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + + W+ L+ V G++N+ +A PTA+ A I G ++S +P N+Y + Sbjct: 577 ---VKPSGLYDWEALRADVIKHGVKNALLVAPMPTASTAQILGNNESFEPFTSNVYNRRV 633 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 ++G+F V+N L+ +L +W + + + L +GS+ NI +IP+D+K ++ T +EI Sbjct: 634 LAGEFPVINKHLLRDLTSLGVWGDKVKNQLLRANGSVQNIPQIPEDIKALYKTVWEIPQR 693 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +++ A+ R +I Q+QS+N+++ EPS K+ + W GLKT YYLR+R + Sbjct: 694 VILDHAAARGPFICQSQSMNIHMAEPSRGKITSMLFYGWRKGLKTGMYYLRTRPKADSIQ 753 Query: 914 STLKGVDGKLNAVP 927 L+ Sbjct: 754 FALEKSVKNHEEDT 767 >gi|38683667|gb|AAR26844.1| FirrV-1-A20 [Feldmannia irregularis virus a] Length = 766 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 274/785 (34%), Positives = 413/785 (52%), Gaps = 36/785 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ G + ++ V + GL V V + + +Y G++ +L+ Sbjct: 1 MYVIKRSGLRENIKFDKVTARVRKLTDGLDLKYVDPIEVTMKVNQGIYSGVTTRELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P+Y+ + AR + L +E + ++ E Sbjct: 61 AETCAYMSINHPDYSVLAARICVSNLYKETESCYSTLVKQLR--------DYVNPETGEW 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + L + ++Y + L Y L +NG E P M Sbjct: 113 APLVSAELVKVVTENREQVQEALDGFAE-TYDYFAYKTLEKSYLLKMNGKIAERPHQLLM 171 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ + A++ Y + S + +TPTLFN+GT PQ+SSCFL T DD + Sbjct: 172 RVAIGIHGDD---ITSALQTYRDMGSKRYTMATPTLFNAGTPTPQMSSCFLMTCKDDSIS 228 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L+ A ++KY+GGLG VRG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 229 GIFDTLKNCACISKYAGGLGVSIHDVRGRGSYIRGTNGVSNGLVPMLRVFNNTARYVDQG 288 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G +RKG++ YLE WH D+E FLDL+KN G++ R D+ A W+PDLFM+RV +N W+ Sbjct: 289 GGRRKGSIAIYLEPWHADIESFLDLKKNQGNELERARDLFYALWVPDLFMRRVEKNQKWS 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++GKEF+ YE YE KV + A LW +L + ETG P+ Sbjct: 349 LMCPNECPGLANVWGKEFDALYEKYEA----SPNKVRATLDARKLWNHILDVQVETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF---- 616 I +KD N +S QQH+GV+ SSNLCTEI +S +E AVCNL SINL + + Sbjct: 405 ILYKDSVNAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLASINLSSVIRHPYTAEAY 464 Query: 617 -DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 DY L + VR L+ VID N + + +A+ SN HR +G+G+ GF AL +L PY Sbjct: 465 VDYTALVGLAGSLVRNLNRVIDKNYYPVPEARASNMKHRPVGIGVQGFADALIMLRKPYD 524 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 SPEA I E I + A+ AS++ AQ G + SF GS QG F D G Sbjct: 525 SPEAAAINVNLFESIYYGALKASLQEAQLYGRHESFPGSPLSQGRFQFDLWG-------- 576 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + T W+ L+ + G+RNS A PTA+ A I G ++S +P N+Y + + Sbjct: 577 --VQPTDTYDWNTLRASIVEHGVRNSLLCAPMPTASTAQILGNNESFEPFTTNVYNRRVL 634 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +G+F VVN L+ +L DLWD+ M + L H+GS+ NI RIP +K ++ T +EI Sbjct: 635 AGEFPVVNKHLLKDLTSLDLWDDEMKNQLLLHNGSVQNIARIPRWVKDLYKTVWEIPQRV 694 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +++ A+ R ++ Q+QS+N+++ EP+ KL + W GLKT YYLR+R + Sbjct: 695 ILDHAADRGPYVCQSQSMNIHMAEPTRAKLTSMLFHGWKRGLKTGMYYLRTRPRADSIQF 754 Query: 915 TLKGV 919 + G Sbjct: 755 GVDGA 759 >gi|168702495|ref|ZP_02734772.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemmata obscuriglobus UQM 2246] Length = 797 Score = 633 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 315/815 (38%), Positives = 453/815 (55%), Gaps = 49/815 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G L N ++ V+ GL V V +T +YDG + ++L+ I Sbjct: 27 MQVRKRSGALEDVNVNKIVRAVQRCSGGLPGVDPMRVAVKTIGGLYDGATTAELDRLSIQ 86 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ LI +EP Y+++ AR L + +EV + + Y Sbjct: 87 TAAGLISEEPEYSRLAARLLATYVDKEVANQDV----HSFSQSIAAGYRHGLVAGG---- 138 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFM 322 + + + L FEY GL+ +YDRY L +R IE P FF+ Sbjct: 139 -----TMAFVAANARKLNAAAAEPAPDLFEYFGLRTVYDRYLLRHPDTRHVIETPAFFFL 193 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA GLA + A+E Y L+S+ ++ STPTLFNSGT PQ+SSC+L P D L Sbjct: 194 RVACGLAESAAD----AIELYRLMSAHRYLPSTPTLFNSGTARPQMSSCYLLDSPADALE 249 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I+ + A L+K++GG+G + +R G+ I GTNG S G++P+LK + + AVNQG Sbjct: 250 AIYDRYADVAKLSKFAGGIGLAYHRIRSRGSLIRGTNGHSNGIVPWLKTLDSSVAAVNQG 309 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA C YLETWH DVEEFL+LR NTGD RRT+++N ANW+PDLFM+RV W+L Sbjct: 310 GKRKGACCVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLFMRRVEAGEPWSL 369 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P V L DL+G F+ AY + E + + + A L+ +M+ L ETG+ W+ Sbjct: 370 FDPKAVPHLTDLFGAAFDAAYTDAEA-----KGLAVKSVPARDLYARMMKTLAETGNGWM 424 Query: 562 TFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 TFKD CN Q VVHSSNLCTEI +S+ ETAVCNLGS+NL H + FD+ Sbjct: 425 TFKDACNRACNQTAEPGAVVHSSNLCTEIVEVTSAGETAVCNLGSVNLARHVTRDGFDFA 484 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 LA T+RTAVR LD V+D+N + +A SN R +GLG+MG Q L +P+ +P A Sbjct: 485 ALAETVRTAVRFLDRVVDVNFYPTPEAAASNARWRPVGLGVMGLQDVFFKLKLPFDAPAA 544 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 E++ E I +HA++ S ELA RG + SF + GV D G+ Sbjct: 545 RELSRRIQEEIYYHALATSCELAAARGPHPSFASTRAAAGVLQFDLWGVEPTDPAR---- 600 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 W L++RV+T G+RNS +AIAPTATIA+I G + ++P NL+ + +SG+F Sbjct: 601 ------WAALRERVRTTGLRNSLLVAIAPTATIASIVGAYECVEPQVSNLFKRETLSGEF 654 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VN +LV++LK LW +A+ + +K DGS+ ++ +P L+ ++ TA+E+ LI+ Sbjct: 655 LQVNRYLVDDLKALGLWTDAVRTKIKLADGSVQSLSELPAGLRAVYRTAWEVPQRGLIDM 714 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 A+ R +IDQ+QSLNL+L+ P+ K+ +Y AW GLKTTYYLRSR AT++ K+T+ Sbjct: 715 AAERGPFIDQSQSLNLFLESPTIGKMSSMYMHAWKKGLKTTYYLRSRPATAIAKTTVTPT 774 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + S + CE CQ Sbjct: 775 ------------AAPADTSAVSCSLENPGACEACQ 797 >gi|314924365|gb|EFS88196.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL001PA1] Length = 856 Score = 633 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 315/856 (36%), Positives = 475/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNARDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|313813766|gb|EFS51480.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL025PA1] Length = 856 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 314/856 (36%), Positives = 475/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL H Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLATHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|50843559|ref|YP_056786.1| ribonucleotide-diphosphate reductase subunit alpha [Propionibacterium acnes KPA171202] gi|282854886|ref|ZP_06264220.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J139] gi|50841161|gb|AAT83828.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium acnes KPA171202] gi|282582032|gb|EFB87415.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J139] gi|314965891|gb|EFT09990.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL082PA2] gi|314981612|gb|EFT25705.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA3] gi|315092252|gb|EFT64228.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA4] gi|315104691|gb|EFT76667.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL050PA2] gi|315107753|gb|EFT79729.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL030PA1] gi|327328670|gb|EGE70430.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL103PA1] Length = 856 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 315/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|88856485|ref|ZP_01131143.1| ribonucleotide-diphosphate reductase alpha subunit [marine actinobacterium PHSC20C1] gi|88814352|gb|EAR24216.1| ribonucleotide-diphosphate reductase alpha subunit [marine actinobacterium PHSC20C1] Length = 813 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 309/785 (39%), Positives = 463/785 (58%), Gaps = 14/785 (1%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVS--SKIVLSETYKNMYDGLSESDLETA 201 + ++ +GT +++ ++ + +E+A +GL D + SE ++DG++ L+ A Sbjct: 2 AITVVKRNGTREPYDANKINLAIEDAATGLDDNITWVTQIASELELTLFDGITTQQLDEA 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 +I + ++ +P + V AR LL+ + + VL +++ L+ E+F + Sbjct: 62 VIQVALQNVKDDPAFDTVAARLLLKTIYKRVLGDYTDA------ADLKKLHKEHFGPNVI 115 Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 GV+ LL + + FDL LA L+ D +Y+G+ L +RY + NG +E+PQ Sbjct: 116 RGVEEGLLDPRLTEMFDLDALAEHLEPAHDELLKYIGVVTLNNRYGIKGRNGDALEVPQY 175 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+MR+AMGL+L E + A++FY +SS ++ + TL N+GT +PQL++CF+ + DD Sbjct: 176 FWMRIAMGLSLNEANPNEAALKFYEKMSSLEYLAAGSTLVNAGTIYPQLANCFVMEMQDD 235 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I ++ L K +GG+G T +R G+ I N S G IPF+ + AV+ Sbjct: 236 MEHIAKTTRDVMWLTKGTGGIGLSVTKLRAQGSPIRSNNTTSTGPIPFMHTIDSILRAVS 295 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 +GGK+ GA+C Y+E WH+D EFL+LR N+GD RRT NTA WI D FMKRV + W Sbjct: 296 RGGKKFGALCFYMENWHMDFPEFLELRSNSGDPYRRTRTANTAVWISDEFMKRVQNDDSW 355 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 LF P EV+DL++LYGK F Y Y AD GE+ +F+KI A ++ +L L + HP Sbjct: 356 YLFDPLEVTDLNELYGKAFSKRYNEYVAMADAGEMHMFKKIGAREQFKSILISLQTSSHP 415 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDY 618 W+T+KD N R+ + G +H SNLCTEITL + +VCNL SINL H D+ Sbjct: 416 WLTWKDTINNRALNNNTGTIHLSNLCTEITLPQDEDNVSVCNLASINLSRHLLPEGGVDF 475 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 K+ + R AVR LDN+IDI ++++A SN +RA+GLG+MGF + L Y S E Sbjct: 476 AKIEESARLAVRQLDNLIDITRSSVKEADFSNEQNRAVGLGVMGFTDIIEKLGFSYESEE 535 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELA 737 A ++ DE ME +S+ AI AS ELA+ERGAY++F+GS W +G+ P+DSI L E R E+ Sbjct: 536 AYDLIDEIMEHVSYAAIDASTELAKERGAYTNFEGSRWSEGLVPLDSIALTEEDRGMEIK 595 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 +NR +RL WD ++++V GMRN+ MAIAPTA+I + G + +DP + ++ +S +G Sbjct: 596 VNRKTRLDWDAMREKV-KGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSNG 654 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F VN LV L+Q LW E + G I N+E IPDD+K + T+F++ P + Sbjct: 655 KFLEVNRNLVETLQQHGLW-EKNREAILRSQGDIQNVEGIPDDIKAVFKTSFQLSPYAFL 713 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 E A+R QKWIDQA S N+YL+ + IY AW G+KTTYYL + E+ST+K Sbjct: 714 EVAARAQKWIDQAISRNMYLETRDLGDMMDIYFDAWSRGVKTTYYLHMKPRHQAEQSTVK 773 Query: 918 GVDGK 922 + Sbjct: 774 VNKSE 778 Score = 41.0 bits (94), Expect = 0.95, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 31 VIKRNGGVTSFDPSKISRAIMKA 53 V+KRNG +D +KI+ AI A Sbjct: 5 VVKRNGTREPYDANKINLAIEDA 27 >gi|289426031|ref|ZP_06427778.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK187] gi|289153574|gb|EFD02288.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK187] gi|313763765|gb|EFS35129.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL013PA1] gi|313793688|gb|EFS41719.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA1] gi|313802999|gb|EFS44207.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL110PA2] gi|313816917|gb|EFS54631.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL059PA1] gi|313829719|gb|EFS67433.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL063PA2] gi|313839373|gb|EFS77087.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL086PA1] gi|314916475|gb|EFS80306.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA4] gi|314918861|gb|EFS82692.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL050PA1] gi|314921070|gb|EFS84901.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL050PA3] gi|314932315|gb|EFS96146.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL067PA1] gi|314956589|gb|EFT00841.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL027PA1] gi|314959471|gb|EFT03573.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL002PA1] gi|314964863|gb|EFT08963.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL082PA1] gi|314968631|gb|EFT12729.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL037PA1] gi|315079175|gb|EFT51178.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL053PA2] gi|315100240|gb|EFT72216.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL059PA2] gi|315102564|gb|EFT74540.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL046PA1] gi|315109518|gb|EFT81494.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL030PA2] gi|327455889|gb|EGF02544.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL087PA3] gi|327456019|gb|EGF02674.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL092PA1] gi|327458041|gb|EGF04696.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL083PA2] gi|328757203|gb|EGF70819.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL087PA1] gi|328757584|gb|EGF71200.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL025PA2] Length = 856 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 314/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL ++ G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTEITGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|91080435|ref|XP_968743.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum] gi|270005755|gb|EFA02203.1| hypothetical protein TcasGA2_TC007860 [Tribolium castaneum] Length = 798 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 248/816 (30%), Positives = 407/816 (49%), Gaps = 34/816 (4%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG + ++ +++ C L V + + +Y G++ +L+T Sbjct: 7 YVLKRDGRKEEVHFDKITSRIQKLCYRLNMDIVDPVSITLKVIGGLYPGVTTVELDTLAA 66 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ + P+YA + AR + L+++ + LY + E+ Sbjct: 67 ETAIVMGADHPDYATLAARIAVSNLQKQTKKHFSDV--------ISDLYHAVDPQTGEKT 118 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 H ++ + L + + Y+RDF++ Y ++L Y ING +E PQ MR Sbjct: 119 PLISDQHYEIIMKNASRLNSCIVYDRDFSYNYFAFKLLERSYLFKINGKTVERPQHMLMR 178 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-YG 382 VA+G+ E A+E YN +S +F+ S+ TL +GT +P L S + +PDD G Sbjct: 179 VAVGIHG---EDIDSAIETYNYMSEGYFIHSSATLLTAGTPYPYLPSTYSIAMPDDSLEG 235 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ + ++ +G + +R G I GTNG S G++P L+V N++A Q Sbjct: 236 IYECISNCIKISNTTGRISVHIQNIRAKGTEIAGTNGVSNGLVPMLRVFNNSAWLNRQSE 295 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 + +LE WH D+ +FL+L++ TG D R D+ A W+PDLFM RV + W+L Sbjct: 296 NQPSNQAIFLEPWHADILDFLNLKRTTGKDEYRARDLQYALWVPDLFMHRVKNDEKWSLM 355 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + L + +G+EFE YE YE E + ++I A +WR + ETG P+I Sbjct: 356 CPHQAQGLPNCWGQEFEKLYEKYE-----SEGRFVKQIPARDVWRAICVSQMETGSPYIL 410 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDK 620 +KD CN +S QQ++G + SS+L TE SSS+E A C S+ N+ + N +D++K Sbjct: 411 YKDACNKKSNQQNLGTIKSSSLSTESIQYSSSDEIAACITASVALNMFVNPERNGYDFEK 470 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L ++T + L+ ID++ + +A+ SN HR IG+G+ G LL +P+ SPEA Sbjct: 471 LKQVVKTLTKNLNKAIDVSAYPSPEARTSNLRHRPIGIGVQGLADTFILLRMPFESPEAR 530 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + + E + + A+ AS E+A+ G YS++ GS QG D G+ Sbjct: 531 SLNVQIFETLYYAALEASSEIAERDGPYSTYDGSPLSQGRLQYDMWGVEP---------- 580 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 T W LK+R+ G+RNS +A+ PT + A I G +QSI+P N+ V+ S +F Sbjct: 581 TKLWDWVALKQRIAKHGVRNSLLVALIPTISTAQILGNNQSIEPYLSNVQVRRVNSSEFR 640 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VN L+ +L +R LW + ++ +GS+ NI IPDDLK I+ T +EI +IE A Sbjct: 641 DVNQHLLKDLTERGLWTSDLKQEVIERNGSVQNIAGIPDDLKCIYKTVWEIPQKIVIEMA 700 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 + R +IDQ+Q++N+++ PS + ++ W GLKT Y LR+ + V+ V Sbjct: 701 ADRGAFIDQSQAMNVHIGAPSYAVMSSMHFYGWQKGLKTGMYNLRTNPVSVVQNGNRSKV 760 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCT--SDTECEVC 953 +D + C+ + CE+C Sbjct: 761 SVVQENGEKSDDMKKSPEEDAALQCSLQNPGACEMC 796 >gi|13242650|ref|NP_077665.1| EsV-1-180 [Ectocarpus siliculosus virus 1] gi|13177450|gb|AAK14594.1|AF204951_179 EsV-1-180 [Ectocarpus siliculosus virus 1] Length = 765 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 250/793 (31%), Positives = 407/793 (51%), Gaps = 41/793 (5%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200 + I DG + ++ +++ C GL+ V + + +Y G++ ++L+T Sbjct: 2 ESMYITKRDGRKENVLFDKISARIKKLCYGLEPNFVDHVAIAQKVISGVYTGVTTTELDT 61 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 ++ + P+Y+ + R + +L +E + + + M Sbjct: 62 LAAETAAYMAIAHPDYSLLAGRIAVSRLHKETKESFVETMADLHAYGMVA---------- 111 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 +++ + L + Y +D +++ + L Y L I+G +E Q Sbjct: 112 -------DDVHTVIQDNAHLLDGAIDYGKDLEYDFFAFKTLEKSYLLKIDGKIVERIQHM 164 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 MRVA+G+ + + +E Y +S +TPTLFN+GT + QLSSCFL + DD Sbjct: 165 LMRVAVGIH---KDDIESVLETYTGMSERWMTHATPTLFNAGTVNNQLSSCFLLAMQDDS 221 Query: 381 -YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 GI+ L++ A ++K++GG+G + +R G++I GTNG S G++P L+ TA +N Sbjct: 222 VDGIYDTLKQTAKISKFAGGIGLSVSNIRAKGSYIKGTNGVSDGIVPLLRCFESTARFIN 281 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G+RKG+ YLE WH D+ EFLDL+KN G++ R D+ W+ DLFM+RV + W Sbjct: 282 QAGRRKGSFAMYLEVWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMRRVKADGDW 341 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TL SP + DL DL+G +F+ AY+ YE + + I A L+ K++ ETG P Sbjct: 342 TLLSPSDAPDLIDLHGADFDQAYKKYESNG------IGKTIKARTLFAKVVESQIETGGP 395 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDY 618 + FKD CN +S Q+H+G + SSNLC E+ SS EE AVCNL SINL+ H + FD+ Sbjct: 396 YYLFKDACNAKSNQRHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVRADRTFDF 455 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L T + A++ L+ VID+N + +E+ + SN HR GLG+ ++ P+ S E Sbjct: 456 ERLHRTAKQAIKNLNKVIDVNFYPLEECRLSNMKHRPCGLGVQALHDVYMVMGFPFESEE 515 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I ++ AS+E A+ G Y SF+GS G D G + Sbjct: 516 AATLNKQIFETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWGHEVDD------ 569 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI-ANICGVSQSIDPSYQNLYVKSNMSG 797 SR W + K ++ GMRNS A+ PTA+ + G +++ + S LY + +SG Sbjct: 570 ---SRHDWTKTKADLQKYGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSG 626 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F +VN +L+ EL LWD M + + GS+ IE IP+ + + +E+ +I Sbjct: 627 EFPIVNKYLIKELINLGLWDGEMKNAIIRGGGSVQGIESIPEKTRTLFKNVWEVSQKAII 686 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 E A+ R +IDQ+QS+N++ + P+ K+ W +GLKT +YY+RSR + T+ Sbjct: 687 EQAAARGPYIDQSQSMNIFFERPTMAKISSALYYGWELGLKTASYYVRSRPVADPVQFTV 746 Query: 917 KGVDGKLNAVPVT 929 Sbjct: 747 SSEKSVNEEDAKE 759 >gi|315094825|gb|EFT66801.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL060PA1] Length = 856 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 316/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A ++I DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRIRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|28493650|ref|NP_787811.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma whipplei str. Twist] gi|28572843|ref|NP_789623.1| ribonucleotide-diphosphate reductase subunit alpha [Tropheryma whipplei TW08/27] gi|28410976|emb|CAD67361.1| ribonucleotide-diphosphate reductase large chain [Tropheryma whipplei TW08/27] gi|28476692|gb|AAO44780.1| ribonucleotide reductase alpha chain [Tropheryma whipplei str. Twist] Length = 792 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 307/780 (39%), Positives = 467/780 (59%), Gaps = 11/780 (1%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L ++ DG ++S+++ +EEA SG D ++ + SE ++DG++ S L+ +LI Sbjct: 2 SLTVVKRDGRKQQYDSRKVCAAIEEALSGSSDAITEQLSSELELTLFDGITTSQLDESLI 61 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + ++ +P Y +V R LL+ + R VL +++ L+ ++F +IE+G Sbjct: 62 QVALQNVKDDPVYDRVATRLLLKSIYRSVLGEYKNCC------QLRDLHVKHFRGFIEKG 115 Query: 264 VKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 V+ +L + FD L+ L +RD F+Y+GL L +RY + +G +E+PQ + Sbjct: 116 VEEGILDRRLDGRFDYDRLSRALDPQRDTLFKYIGLVTLNNRYGIRARSGKNLEVPQYLW 175 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 MR++MGL++ E + A++FY +S ++ + TL N+GT PQLS+CF+ + DD+ Sbjct: 176 MRISMGLSVLEKDPTGSALKFYEKMSKLEYLAAGSTLVNAGTCTPQLSNCFVMEMQDDIE 235 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I ++ +L K +GG+G T +R G+ I N +S G IPF+ + AV++G Sbjct: 236 HIAKTTRDVMLLTKGTGGIGLSVTKLRAQGSPIRSNNTRSTGPIPFMHTIDSVLRAVSRG 295 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GK+ GA+C Y+E WH+D EF+DLR+N+GD RRT NTA WI D FMKRV + W L Sbjct: 296 GKKFGALCFYMENWHMDFPEFIDLRQNSGDPYRRTRTANTAVWISDEFMKRVINDREWYL 355 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P E DL++LYG EF YE Y QA+ G + +F+K+ A +R +L L T HPWI Sbjct: 356 FDPLETPDLNELYGAEFSKRYEYYVNQAEAGRLSMFKKLGAREQFRAILMSLQTTSHPWI 415 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 TFKD N+R+ + G +H SNLCTEI L E +VCNL SINL H + + D+ L Sbjct: 416 TFKDTINLRALNNNTGTIHLSNLCTEICLPQDRENVSVCNLASINLSRHLIDGEIDWQLL 475 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + R AVR LDN+IDI C +++++ SN+ +RAIGLG+MGF + + L Y S +A + Sbjct: 476 EESTRLAVRQLDNLIDITCSSVKESDNSNNLNRAIGLGIMGFTNLIERLGYSYESEQAFD 535 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNR 740 + D ME ISF AI S LA+ERG Y +F GS W +G+ PIDSI ++++ R +++N Sbjct: 536 LIDRLMEQISFVAIDESCNLAEERGPYKNFHGSRWSKGMLPIDSIKIVSQNRGVPVSVNT 595 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + RL WD L+KRV G+RN+ +AIAPTA+I + G + +DP + ++ +S G F Sbjct: 596 SYRLDWDSLRKRV-RNGIRNATLLAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSFGKFL 654 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VN LV +LK+R LW E + D+ G+I I+ IP ++K + T+F++ P ++ A Sbjct: 655 EVNENLVLDLKRRGLW-ERVREDILRSQGNIQQIDAIPGEIKANYKTSFQLSPYAFVQVA 713 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 +R QKW+DQA S N+YL+ + +Y AW MGLKTTYYL + E+ST+K Sbjct: 714 ARAQKWVDQAISRNMYLESRDISDMVSVYTTAWEMGLKTTYYLHMKPRHQAEQSTVKVNK 773 >gi|315087307|gb|EFT59283.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL002PA3] Length = 856 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 314/856 (36%), Positives = 475/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RR +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRPRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|289427883|ref|ZP_06429587.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J165] gi|289158766|gb|EFD06966.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes J165] gi|313808409|gb|EFS46876.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL087PA2] gi|313818170|gb|EFS55884.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL046PA2] gi|313821028|gb|EFS58742.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL036PA1] gi|313823900|gb|EFS61614.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL036PA2] gi|313827160|gb|EFS64874.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL063PA1] gi|314927053|gb|EFS90884.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL036PA3] gi|314961873|gb|EFT05974.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL002PA2] gi|314979602|gb|EFT23696.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL072PA2] gi|314988337|gb|EFT32428.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA2] gi|314990427|gb|EFT34518.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA3] gi|315082360|gb|EFT54336.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL078PA1] gi|315083810|gb|EFT55786.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL027PA2] gi|315089725|gb|EFT61701.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL072PA1] gi|327326612|gb|EGE68400.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL096PA3] gi|327449569|gb|EGE96223.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL013PA2] gi|332676501|gb|AEE73317.1| ribonucleoside-diphosphate reductase subunit alpha [Propionibacterium acnes 266] Length = 856 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 315/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|295131637|ref|YP_003582300.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK137] gi|291377353|gb|ADE01208.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes SK137] gi|313771781|gb|EFS37747.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL074PA1] gi|313810604|gb|EFS48318.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL083PA1] gi|313831645|gb|EFS69359.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL007PA1] gi|313834799|gb|EFS72513.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL056PA1] gi|314974995|gb|EFT19090.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL053PA1] gi|314977909|gb|EFT22003.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL045PA1] gi|314984683|gb|EFT28775.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL005PA1] gi|315095600|gb|EFT67576.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL038PA1] gi|327332876|gb|EGE74608.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL096PA2] gi|327447703|gb|EGE94357.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL043PA2] gi|327448578|gb|EGE95232.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL043PA1] gi|328762001|gb|EGF75507.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL099PA1] Length = 856 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 315/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLINGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|327335277|gb|EGE76987.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL097PA1] Length = 856 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 314/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVNLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 ++PM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLNPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|68490738|ref|XP_710811.1| hypothetical protein CaO19.13267 [Candida albicans SC5314] gi|68490761|ref|XP_710800.1| hypothetical protein CaO19.5845 [Candida albicans SC5314] gi|46432045|gb|EAK91552.1| hypothetical protein CaO19.5845 [Candida albicans SC5314] gi|46432057|gb|EAK91563.1| hypothetical protein CaO19.13267 [Candida albicans SC5314] Length = 816 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 270/804 (33%), Positives = 427/804 (53%), Gaps = 35/804 (4%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 KI + G F+S ++ ++EE L D+ ++ + + L+ +L T + Sbjct: 3 KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + P+YA + R KL +V + + ++ +Y R Sbjct: 63 IASRVIYHPDYAILAGRIETRKLYLKVPYSFSENVERLR---------KYRPRKSNSYSP 113 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 ++ +L + RD+ Y G++ L Y L I+G E+PQ FMRVA Sbjct: 114 ISSAFYKVVKKHGEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVA 173 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384 +G+ + E Y+L+S +F+ ++PTL+N+G+ LSSCFL + DD + GIF Sbjct: 174 IGIHQND---INAIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIF 230 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443 L E A+++K SGG+G +R G++I TNG S G++P L+V N+TA V+QGG K Sbjct: 231 KTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGK 290 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA Y+E WH D+ + L++RKN G++ RT D+ WIPDLFMKRV +N+ WTLFS Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+E L D+YG+EFE Y YE + + +SA LW +L ETG P++ + Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEGFGTK------VSAHKLWLAILHSQTETGGPYMLY 404 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYD 619 KD CN +S Q+++G + SSNLC EI SS +ETAVCNL S+ L + + FD++ Sbjct: 405 KDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL S + R L+ VID+ + +E A+ SN HR I LG+ G L +P+ S A Sbjct: 465 KLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I A+ ASVELA + G Y +F+GS +G+ D Sbjct: 525 KTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFDMWK----------HK 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W LK ++ G+RNS +A PTA+ + I G ++ +P NLY + ++G++ Sbjct: 575 PSPMYDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEY 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN +L+ +L +WD AM + + +GSI NI IPD++K+++ T +E+ +I+ Sbjct: 635 QIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTVWELSQKVIIDM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R K++DQ+QS+N++L P+ KL + AW GLKT YYLR+++A+ + T+ Sbjct: 695 AADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTVDA 754 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPS 942 + + V + P Sbjct: 755 KEAEKVGTKVPQKSLKRKKYMEPQ 778 >gi|165969145|ref|YP_001651045.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV] gi|164663641|gb|ABY65861.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV] Length = 761 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 268/784 (34%), Positives = 419/784 (53%), Gaps = 39/784 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196 A KL ++ DG+ + ++ + GL + + + K +Y G++ + Sbjct: 3 AARENKLYVIKRDGSKQTVLLDKITSKLNRLSYGLNKQFIDPAAITIQVVKTIYAGVTTT 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L+ + + +YA + R +++ + V + + K H + L Sbjct: 63 ELDQHAAKETANMAYIHDDYALLAGRIMVDDNHKHVPDSFVRVVAKLYKHNLVSL----- 117 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 + + L + Y+RD+ ++Y + L + Y ING E Sbjct: 118 ------------ALFEVASANADALEAQIDYKRDYEYKYFAYKTLENGYLKRINGRVAER 165 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q MRVA+G+ ++ A+E YNL ++ F ++PTLF +G PQLSSCFL T+ Sbjct: 166 IQHMLMRVAIGIHGRD---IDAAIETYNLTANKMFTHASPTLFAAGCPQPQLSSCFLLTL 222 Query: 377 -PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D + G++ L + A ++KY GGLG + R G+ I GTNG + GV P L+V N+ Sbjct: 223 KEDSIKGMYETLADCAQISKYGGGLGVNVHKARARGSAIRGTNGTASGVEPLLRVYNNCV 282 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGGKRKGA+ YLE WH D+ +FL+L++N G + ++ D+ A W+PDLFMKRV Q Sbjct: 283 RHVDQGGKRKGAMAVYLEPWHADIYDFLNLKRNMGAEDKKARDLLYALWVPDLFMKRVQQ 342 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N W+L PD L D+Y EFE YE YE E + ++ A +L+R ++ E Sbjct: 343 NEMWSLMCPDRCPGLSDVYSLEFEKLYEQYE-----SENRFTCQVEARSLFRTIIETQVE 397 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TG P+I +KD CNI+S Q+++G + SNLC EI SSSEE AVCNL S+ + + Sbjct: 398 TGTPYILYKDACNIKSNQKNLGTIRCSNLCAEIVQYSSSEEIAVCNLASVCVNRFIKSGV 457 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ L S + V+ L+ +IDIN + +E AK+SN HR +G+G+ G A +L +PY Sbjct: 458 FDFVALKSVTKIVVKNLNKIIDINYYPLEAAKESNLKHRPVGVGIQGLADAFCILGLPYE 517 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S +A + + E + + A+ AS +LA+ G YSS+ S GV D Sbjct: 518 SDKAKMLNKQIAETVYYAALEASCDLAKLNGPYSSYSDSPASLGVLQYDMWN-------- 569 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + T+ W +LK R+ G+RNS +A PTAT A I G ++S +P NLYV+ + Sbjct: 570 --VQPTNLWNWADLKLRIAKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNLYVRRVL 627 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +GDF V+N LV +L + +L+D+ M + + GS+ I+RIPDD+K ++ T +E+ Sbjct: 628 AGDFQVINQHLVEDLCRLNLYDDHMRNSIIAAGGSVQKIDRIPDDIKAVYKTVWEMSSKN 687 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A+ R +IDQ+QS N+++ +PS L ++ W GLKT YYLR++ A Sbjct: 688 LIDMAADRGAFIDQSQSFNVFIAQPSFALLTSVHMHTWKRGLKTGMYYLRTKPAADAIAF 747 Query: 915 TLKG 918 T+ Sbjct: 748 TVDK 751 >gi|328757394|gb|EGF71010.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL020PA1] Length = 856 Score = 628 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 314/856 (36%), Positives = 476/856 (55%), Gaps = 42/856 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + +Q L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGDTHDDLGDVDPERVQDLHRNYF 122 Query: 257 CRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + DFDL LA L RD ++G++ + +RY L + + Sbjct: 123 PRTIAKLVADGHLDERLGRDFDLETLAAALDPTRDDLIGFMGVRTMINRYLLRTPDKQAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL+L E + A+ Y+ +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSLTEDDPTSSALALYDSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D+L I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDNLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTFDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHMDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G +F Y Y QA+ G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETQDLTELTGSDFSKRYAQYVEQAEAGKIKRFRRTTAREQFRAILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + TAVCNL S++L AH Sbjct: 423 TTSHPWLTWKDSINTRALNSNTGTIHSSNLCTEICLPQDRDHTAVCNLASVDLAAHLAGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLDWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SP+A EI D +EFIS+HAI S +LA ERGAY F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPDACEIVDRVVEFISWHAIDTSADLAAERGAYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T GMRN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GMRNATLMAIAPTASIGLIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LW E + +L G IE IP L++++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLW-ETIREELLRRQGDPSEIEAIPAPLRRLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DPM + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPMAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKST--LKGVDGKLNAVPVTDPNSSTHSLGIP-------------------------S 942 + E+ST + G+ N + + G + Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATAVRRASGAATIRKPVTETLNASVEPVVSLDLIDGA 840 Query: 943 SCTSDT----ECEVCQ 954 SC D +CE CQ Sbjct: 841 SCPVDPQERQQCESCQ 856 >gi|241958750|ref|XP_002422094.1| ribonucleoside-diphosphate reductase, large subunit, putative [Candida dubliniensis CD36] gi|223645439|emb|CAX40095.1| ribonucleoside-diphosphate reductase, large subunit, putative [Candida dubliniensis CD36] Length = 816 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 277/839 (33%), Positives = 434/839 (51%), Gaps = 59/839 (7%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 KI + G F+S ++ ++EEA L D+ ++ + + L+ +L T + Sbjct: 3 KIKVLSGEEEEFDSVKIHKLLEEASFNLGDLDLDQLVESVQRGLPSTLTIEELYTFIAEV 62 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + PNYA + R KL +V + + ++ +Y R + Sbjct: 63 IASRVIYHPNYAILAGRIETRKLYLKVPYSFSENVERLR---------KYRPRESKSYSP 113 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 ++ + + RD + Y G++ L Y L + G E+PQ FMRVA Sbjct: 114 ISSAFYKVVKKHGEFFDKVIDKTRDSSLTYFGIKTLESSYLLKMGGEVAELPQYLFMRVA 173 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIF 384 +G+ + VE Y+L+S +F+ ++PTL+N+G+ LSSCFL + D + GIF Sbjct: 174 IGIHQND---LNAIVETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKEDSIDGIF 230 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443 L E A+++K SGG+G +R GA+I GTNG S G++P L+V N+TA V+QGG K Sbjct: 231 KTLNEAALISKASGGIGIHVHNIRSNGAYIAGTNGSSNGLVPMLRVYNNTARYVDQGGGK 290 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA Y+E WH D+ + L++RKN G++ RT D+ WIPDLFMKRV N+ WTLFS Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKDNSDWTLFS 350 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+E L D+YG+EFE Y YE + + +SA LW +L ETG P++ + Sbjct: 351 PNEALGLSDVYGEEFEKLYCKYESEGFGTK------VSAHKLWLAILQSQTETGGPYMLY 404 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYD 619 KD CN +S Q+++G + SSNLC EI SS EETAVCNL S+ L + + FD++ Sbjct: 405 KDACNTKSNQKNIGTIKSSNLCCEIVEYSSPEETAVCNLASLALPTYLKTTEDAIAFDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL S + R L+ VID+ + ++ A+ SN HR I LG+ G L +P+ S A Sbjct: 465 KLHSVTKVLTRNLNKVIDVTKYPVKTAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + E I A+ ASVELA + G Y +F+GS G+ D Sbjct: 525 KTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASNGILQFDMWN----------HK 574 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W+ LK ++ G+RNS +A PTA+ + I G ++ +P NLY + ++G++ Sbjct: 575 PSPMYDWNALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEY 634 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +VN +L+ +L +WD AM + + +GSI I IPD++K+++ T +E+ +I+ Sbjct: 635 QIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQKIPNIPDEIKQLYKTVWELSQKVIIDM 694 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKG 918 A+ R K++DQ+QS+N++L P+ KL + AW GLKT YYLR+++A+ + T+ Sbjct: 695 AADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTVDA 754 Query: 919 VDGKL--NAVPVTDPNSSTHSLGIPS---------------------SCTSDTECEVCQ 954 + + N VP + P +C + E CQ Sbjct: 755 SEAEKAGNKVPQKSLKRKKYMEPQPRKKTAYSTPDSELYDIHDSTPITCNIEDS-ESCQ 812 >gi|155371048|ref|YP_001426582.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella virus 1] gi|155124368|gb|ABT16235.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella virus 1] Length = 763 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 257/788 (32%), Positives = 412/788 (52%), Gaps = 54/788 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC--------------SGLQDVSSKIVLSETYKNM 189 ++ ++ DG+ + + ++ + C +GL +V +++ ++ Sbjct: 6 RMNVIKRDGSSEAVSFDKIMTRIGRLCWAENAKPNHSGRVQNGL-EVDISRIVASICSSV 64 Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 D ++ L+ + +++ P+Y + AR + L ++ +V Sbjct: 65 VDNITTVQLDDLTADKAASMVTNHPDYGILAARIAVSNLHKQSSDSVVDT---------- 114 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y + ++ +KY+RD+ F+Y G + Y + Sbjct: 115 ---------YTKMSSMLSDEFMQVVRAHEQEFQALVKYDRDYDFDYFGFSTMKRLYLTKV 165 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 +G +E PQ ++RVA+ L ++ K E Y+ LS F ++PTLFN+G R+ L+ Sbjct: 166 DGKVVERPQHTYLRVAIALWGEDIAKV---KETYDALSKRKFTHASPTLFNAGFRNANLA 222 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D L IF +L + A L+K+ GG+G + +RG G+ I GTNG+S G++P LK Sbjct: 223 SCFLVHVDDSLTNIFKSLGDVAQLSKFGGGIGLHLSDIRGRGSKIQGTNGESDGIVPMLK 282 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 V + T+ NQGG+RKG+ YLE H D+ +FL LR+N G++ +R ++ A W+ DLF Sbjct: 283 VYDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLF 342 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 MKRV + W+LF P E L D +GKE+E Y YE E + + + A +W M Sbjct: 343 MKRVEADVAWSLFDPKECPGLTDAFGKEYEDLYLRYE-----SEGRAKKVVKARDVWNAM 397 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 + ETG P++ KD N+++ Q + G + SNLC EI +S++ETAVC +GSI L Sbjct: 398 IITQIETGMPYVLNKDSVNVKNMQSNAGTITGSNLCAEIVEYTSTDETAVCVIGSIVLQN 457 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + N +D++ L ++ + LD ID+ + I +AK SN R IG+G+ G Q Sbjct: 458 YVKNGAYDFEDLRKHVKILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFK 517 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +P+ S A + E E I F A+ AS ELA+E G + +F+GS +GV G Sbjct: 518 LRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTE 577 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +RL W L++RVK G+RNS A+ PTA+ A ICG ++++P NL Sbjct: 578 P----------VTRLDWKTLEERVKK-GVRNSLTTALMPTASTAQICGSVEAMEPITSNL 626 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + ++G+F VVN++LV +L R W EAM + + + GSI + I +LK I+ TA+ Sbjct: 627 YSRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAW 686 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 E+ +I+ A+ R ++DQ QS+NL++ PS K + + AW GLKT YY RS+ A Sbjct: 687 ELSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPA 746 Query: 909 TSVEKSTL 916 + T+ Sbjct: 747 ANAIAVTV 754 >gi|331235025|ref|XP_003330173.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309163|gb|EFP85754.1| ribonucleoside-diphosphate reductase large chain [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 805 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 266/733 (36%), Positives = 404/733 (55%), Gaps = 29/733 (3%) Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 + + P+YA + AR + L +E +K ++ LY Sbjct: 1 MTTRHPDYAVLAARIAISNLHKET--------KKLFSQVIEDLYTYVNPINGRPSSMISQ 52 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 + + L + + Y+RDF + Y G + L Y L I G E PQ MRVA+G+ Sbjct: 53 ETYEAVQANAEALNSAVIYDRDFNYNYFGFKTLERSYLLRIKGKVAERPQHMLMRVAVGI 112 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGAL 387 ++A+ YNL+S +F ++PTLFN+GT HPQLSSCFL D + GI+ L Sbjct: 113 HG---MDVEKAIRTYNLMSEKYFTHASPTLFNAGTPHPQLSSCFLVASKSDSIDGIYDTL 169 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKG 446 + AM++K +GG+G +R G++I GTNG S G++P L+V N+TA V+QG KR G Sbjct: 170 KTCAMISKSAGGIGLHINNIRATGSYISGTNGYSNGIVPMLRVFNNTARYVDQGGNKRPG 229 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLE WH DV ++LDLRKN G + R D+ A WIPDLFM RV +N W LF P E Sbjct: 230 AFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMSRVEKNQDWPLFCPAE 289 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D+YG+EFE + YE+ E + + + A LW +L ETG+P++ +KD Sbjct: 290 APGLADVYGEEFEALFAKYEK-----ENRAKKTVKAQKLWYAILEAQTETGNPFMLYKDA 344 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N +S Q+++G + SSNLCTEI S+ +E AVCNL SI L + + ++D++KL + Sbjct: 345 ANKKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIVDGKYDFNKLHEVTK 404 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 L+ +ID+N + + +AKKSN HR IG+G+ G A +L +P+ SPEA ++ + Sbjct: 405 EVTYNLNKIIDVNYYPVPEAKKSNMRHRPIGIGVQGLADAFQILKLPFESPEAKKLNTQI 464 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E + ++ AS ELA + G Y +F GS QG+ D + + W Sbjct: 465 FETLYHASLEASNELAIKEGPYETFPGSPASQGILQFDMWN----------VKPSDLWEW 514 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D LK++VKT G+RNS +A PTA+ + I G ++ +P N+Y + ++G+F +VN +L Sbjct: 515 DSLKEKVKTTGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVNPWL 574 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + EL + LWD+ M + + H GSI NI IP ++K ++ T +EI +++ A+ R + Sbjct: 575 LKELVEMGLWDDEMKNRIIAHQGSIQNIPNIPTEMKAVYKTVWEISQKIILDMAADRGAF 634 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNA 925 IDQ+QSLN++L P+ +L ++ AW GLKT YYLR+R+A + + T+ Sbjct: 635 IDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDKKLQDEAK 694 Query: 926 VPVTDPNSSTHSL 938 + S Sbjct: 695 AANKAATLVSSSA 707 >gi|311743884|ref|ZP_07717690.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium marinum DSM 15272] gi|311313014|gb|EFQ82925.1| ribonucleotide-diphosphate reductase alpha subunit [Aeromicrobium marinum DSM 15272] Length = 828 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 303/836 (36%), Positives = 475/836 (56%), Gaps = 34/836 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK--IVLSETYKNMYDGLSESDLETA 201 + ++ DGT ++ + +EEA +GL D ++ + SE ++DG++ L+ A Sbjct: 2 TITVIKRDGTRAPYDGYEIARSIEEAATGLPDQVARVTQLQSELEITLFDGITSEQLDEA 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ + ++ +P + + +R L++ L ++V + T E+ + F + Sbjct: 62 VVGVALQNVKDDPAFDTIASRLLVKTLYKKVFG------EGVTRDEVDAFHGPAFVASVV 115 Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQA 319 GV+ LL + + +DL L L RD Y+G+Q + RY + +G+ +E+PQ Sbjct: 116 RGVELGLLDHRLAERYDLEVLGAALDPARDDLLRYIGVQTMRTRYMLVEPDGTPLEVPQF 175 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 F+MRV+MGLAL E + A+ FY+ +S ++ + TL N+GT + QLS+CF+ + DD Sbjct: 176 FWMRVSMGLALDEADPTAAALAFYDKMSRLEYLAAGSTLVNAGTGYAQLSNCFVMQMEDD 235 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I ++++ L K +GG+G + +R G+ I + S G IPF+ + T A++ Sbjct: 236 IEHIAKSVRDVMWLTKGTGGIGLSVSKLRSEGSPIRSNHTTSTGPIPFMHTIDSTLRAIS 295 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 +GGK+ GA+C Y+E WH+D +FLDLR N+GD RRT NTA WI D FMKRV + W Sbjct: 296 RGGKKFGALCFYMENWHLDFAQFLDLRANSGDPYRRTRTANTAVWISDEFMKRVADDLDW 355 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 LF P +V DL +L+G F Y Y +AD G ++ +K+ A +R +L L + HP Sbjct: 356 YLFDPLDVPDLTELFGAAFSARYAEYVAEADAGRLR-HKKLRAREQFRAILVSLQASSHP 414 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQ 615 W+T+KD N R+ + G +H SNLCTEITL + AVCNL SINL H ++ Sbjct: 415 WLTWKDTINTRALNHNTGTIHLSNLCTEITLPQDRDNVAVCNLASINLSRHLVGRRSDAH 474 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+D+LA + R AVR LDN+IDI ++ ++++SN +RA+GLG+MGF + Y Sbjct: 475 IDWDRLAGSTRLAVRQLDNLIDITISSVPESERSNEQNRALGLGVMGFTDVVERFGWSYE 534 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD- 734 S +A ++ DE MEF+S+HAI AS +LA+ERGAY +F+GS W QG+ PIDS+ LLA R Sbjct: 535 SEQAYDLIDEVMEFVSWHAIDASADLARERGAYPNFEGSRWSQGLVPIDSLDLLAADRGV 594 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + ++RT+RL WD L+ +V G+RNS MA+APTA+I + G + +DP + ++ ++ Sbjct: 595 PVEVDRTTRLDWDALRAKVAG-GVRNSTLMAVAPTASIGLVAGTTPGLDPQFSQIFSRAT 653 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 SG F VN LV +L+ LW E + DL H G + ++ +P +L++I+ T+F++ P Sbjct: 654 SSGKFLEVNRNLVEDLQALGLW-ETVREDLLRHQGDLSKVDGVPAELQEIYRTSFQLSPY 712 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + A+R QKWIDQA S N+YL ++ +Y AW MG+KTTYYL + E+S Sbjct: 713 AFLHVAARAQKWIDQAISRNIYLQSRDVGEMAELYAAAWRMGVKTTYYLHMMPRHTAEQS 772 Query: 915 TLKGVDGKLN------------AVPVTDPNSSTHSLGIPSSCTSDTE----CEVCQ 954 T+K + AV + ++C D C+ CQ Sbjct: 773 TVKVNKAASSTPAGGAARRGFGAVATAPVEVQELEVVDGAACPVDPAERLQCDSCQ 828 >gi|314928744|gb|EFS92575.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL044PA1] Length = 854 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 306/854 (35%), Positives = 469/854 (54%), Gaps = 40/854 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + ++ L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYF 122 Query: 257 CRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + F+L LA L RD + G++ + +RY L + + Sbjct: 123 PRTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL++ E + A+ YN +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 DDL I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G F Y Y QA G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + T+VCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + ++D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SPEA EI D +EFIS+HAI S +LA ERG+Y F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T G+RN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LWD +L G I+ IP L+ ++ T+F Sbjct: 662 FSRTTSAGKFLEVNRNLVADLKDLGLWDST-REELLRRQGDPSEIDAIPASLRHLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DP+ + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKSTLKGVDG-------------------------KLNAVPVTDPNSSTHSLGIPSSC 944 + E+ST+ K + + +L ++C Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATTVRRSSRTATIEKPVIEEFDEVKPVSLNLIDGTTC 840 Query: 945 TSDT----ECEVCQ 954 D +CE CQ Sbjct: 841 PVDPQERQQCESCQ 854 >gi|313836279|gb|EFS73993.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL037PA2] gi|314971219|gb|EFT15317.1| ribonucleoside-diphosphate reductase, alpha subunit [Propionibacterium acnes HL037PA3] gi|328906507|gb|EGG26282.1| ribonucleotide-diphosphate reductase subunit alpha [Propionibacterium sp. P08] Length = 854 Score = 623 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 306/854 (35%), Positives = 469/854 (54%), Gaps = 40/854 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI--VLSETYKNMYDGLSES 196 A +++ DG+L ++ + + ++ GL D ++ + +E ++DG++ Sbjct: 3 ADPISTIRVRKRDGSLAPYDGNEVAASIIDSARGLDDAVARATLLQAEVEITLFDGITTD 62 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 L+ A+I + + +P + + +R ++KL +EV + ++ L+ YF Sbjct: 63 ALDEAVIQVALGNAKDDPAFDTIASRIAVKKLYKEVFGNTHDSLGDVDPEQVHDLHRSYF 122 Query: 257 CRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 R I + V L E + F+L LA L RD + G++ + +RY L + + Sbjct: 123 PRTIAKLVADGYLDERLERIFNLEALAAALDPTRDDLIGFTGVRTMINRYLLRTPDKKAL 182 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E+PQ F+MRVAMGL++ E + A+ YN +S+ + + TL N+GT QLS+CF+ Sbjct: 183 EVPQYFWMRVAMGLSITEDDPTSSALTLYNSMSNLRHLAAGSTLVNAGTPSAQLSNCFVM 242 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 DDL I +++ + K +GG+G + +R G+ I N S G IPF+ + T Sbjct: 243 RTEDDLEHIAQTIRDVMWITKGTGGIGLSMSDLRCEGSPIRSDNTASTGPIPFIHTIDST 302 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV++GGK+ GA+C YLE WH+D +FLDLR+N+GD RRT +TA WI D FMKRV Sbjct: 303 LRAVSRGGKKLGALCFYLENWHLDFPQFLDLRQNSGDPYRRTRTADTAVWISDEFMKRVA 362 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 ++ W LF P E DL +L G F Y Y QA G+IK FR+ +A +R +L L Sbjct: 363 KDEDWYLFDPAETPDLTELTGAAFSKRYAYYVAQAQAGKIKRFRRTTAREQFRTILVSLQ 422 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH---- 610 T HPW+T+KD N R+ + G +HSSNLCTEI L + T+VCNL S+NL AH Sbjct: 423 TTSHPWLTWKDSVNTRALNNNTGTIHSSNLCTEICLPQDRDHTSVCNLASVNLAAHLVGP 482 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + ++D+LA+T R AVR LDN++DI + +A++SN +RAIGLG+MG L + Sbjct: 483 RGKRRLNWDQLAATTRLAVRHLDNLVDITASAVPQAQRSNEENRAIGLGVMGLTDMLEQI 542 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 +PY SPEA EI D +EFIS+HAI S +LA ERG+Y F+GS W +G+ P+D++ +L Sbjct: 543 RVPYDSPEACEIVDRVVEFISWHAIDTSSDLATERGSYPMFEGSGWSRGMVPVDTLAVLE 602 Query: 731 EVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R + ++RT+R+ WD L+ +V+T G+RN+ MAIAPTA+I I G + +DP + + Sbjct: 603 RDRGIPVDVDRTTRMDWDALRAKVRT-GIRNATLMAIAPTASIGFIAGTTPGLDPQFSQM 661 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + ++ +G F VN LV +LK LWD +L G I+ IP L+ ++ T+F Sbjct: 662 FSRATSAGKFLEVNRNLVADLKDLGLWDST-REELLRRQGDPSEIDAIPASLRHLYRTSF 720 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DP+ + A+R QKW+DQA S N+YL S ++ +Y AW MG+KTTYYL Sbjct: 721 TLDPIAYLNVAARAQKWVDQAISRNIYLASRSVGDMEDLYTAAWRMGVKTTYYLHMLPRH 780 Query: 910 SVEKSTLKGVDG-------------------------KLNAVPVTDPNSSTHSLGIPSSC 944 + E+ST+ K + + +L ++C Sbjct: 781 TAEQSTVAVNKAAGRRNGPRRGFATTVRRSSRTATIEKPVIEEFDEVKPVSLNLIDGTTC 840 Query: 945 TSDT----ECEVCQ 954 D +CE CQ Sbjct: 841 PVDPQERQQCESCQ 854 >gi|297268644|ref|XP_002799731.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Macaca mulatta] Length = 695 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 269/711 (37%), Positives = 411/711 (57%), Gaps = 23/711 (3%) Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M+ LY + ++ + L + + Y+RDF++ Y G + L Y L Sbjct: 1 MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 ING E PQ MRV++G+ E A+E YNLLS F ++PTLFN+GT PQ Sbjct: 61 KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117 Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVP 177 Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WI Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q +V + + A L Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQL 292 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + T W+ LK+ + G+RNS +A PTA+ A I G ++SI+P Sbjct: 473 MWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK++ Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903 + T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYL Sbjct: 583 YKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642 Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 R+R A + + TL + + ++ + S + EC +C Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENRDECLMC 693 >gi|194382560|dbj|BAG64450.1| unnamed protein product [Homo sapiens] Length = 695 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 268/711 (37%), Positives = 409/711 (57%), Gaps = 23/711 (3%) Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M+ LY + ++ + L + + Y+RDF++ Y G + L Y L Sbjct: 1 MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 ING E PQ MRV++G+ E A+E YNLLS F ++PTLFN+GT PQ Sbjct: 61 KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117 Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG G++P Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNPNGLVP 177 Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WI Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + + A L Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQL 292 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + T W LK+++ G+RNS +A PTA+ A I G ++SI+P Sbjct: 473 MWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK++ Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903 + T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYL Sbjct: 583 YKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642 Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 R+R A + + TL V + ++ + S + EC +C Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693 >gi|157953938|ref|YP_001498829.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella virus AR158] gi|156068586|gb|ABU44293.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella virus AR158] Length = 767 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 260/796 (32%), Positives = 424/796 (53%), Gaps = 53/796 (6%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--------------VSSKIVLSE 184 P+ + ++ DG+ + + ++ ++ C + V +++ Sbjct: 4 RPMNRLMVVLKRDGSKENISFDKILQRIQRLCWPIDSKPVYKGSRAMTGLSVDVSKIVAS 63 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 ++ DG+S L+ S ++ + P+Y + AR + L+++ + Sbjct: 64 VCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDA----- 118 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 + E+ L + F IE+ + + Y+RD+ F+Y G + + Sbjct: 119 YAEIAHLLSDDFKENIEKH--------------ADEYQSFIDYDRDYDFDYFGFKTMERL 164 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 Y +N +E PQ ++RVA+GL + + E Y+ LS F ++PTLFN+G + Sbjct: 165 YLTKVNNKIVERPQHVYLRVAIGLWGSDIARV---KETYDALSCRKFTHASPTLFNAGFK 221 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 QL+SCFL TV D L I+ L + A L+K+ GGLG + + +RG G+ I+GTNG+S G+ Sbjct: 222 KAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINISEIRGRGSRINGTNGESDGI 281 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +P LKV + T+ NQGG+RKG+ YLE H DV +FL +++N G++ R ++ A W Sbjct: 282 VPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVW 341 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + DLFMKRV +A W+LF P E L D +G E+ YE YE E K + A Sbjct: 342 LNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYERYEA-----EGKAKNVVKARD 396 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W M+T + ETG P+++ KD N ++ Q + G + SNLC EI +S EETAVC +GS Sbjct: 397 VWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNLCNEIVEYTSKEETAVCVIGS 456 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 + L + N++FD+D L ++ + LD ID+ + I++A+ SN R IG+G+ G Q Sbjct: 457 VVLKNYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQ 516 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L +P+ S EA ++ E E I + A+ AS+ELA+ G Y +F+GS +G+ Sbjct: 517 DVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEIHGPYPTFEGSPASKGILQYH 576 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + S L W L++RVK G+RNS A+ PTA+ A ICG ++ +P Sbjct: 577 LWDVTPK----------SNLDWRGLEERVKK-GVRNSLVTALMPTASTAQICGSIEAFEP 625 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 NLY + ++G+F VVNS+LV EL +R W E+M + + + GSI + I +K + Sbjct: 626 ITSNLYSRRTLAGEFPVVNSYLVRELIERGTWSESMKNQIIANGGSIQKVIGIHPSVKAV 685 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYL 903 + TA+++ +I+ A+ R ++DQ QS+NL+L +P+ K + + W GLKT YYL Sbjct: 686 YKTAWDLSMKSVIDMAADRGPFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYL 745 Query: 904 RSRSATSVEKSTLKGV 919 RS+ ++S T+ Sbjct: 746 RSKPSSSAIAVTIDND 761 >gi|332211481|ref|XP_003254847.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 3 [Nomascus leucogenys] Length = 695 Score = 622 bits (1603), Expect = e-175, Method: Composition-based stats. Identities = 269/711 (37%), Positives = 409/711 (57%), Gaps = 23/711 (3%) Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M+ LY + ++ + L + + Y+RDF++ Y G + L Y L Sbjct: 1 MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 ING E PQ MRV++G+ E A+E YNLLS F ++PTLFN+GT PQ Sbjct: 61 KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117 Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVP 177 Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WI Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + + A L Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQL 292 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + T W LK+++ G+RNS +A PTA+ A I G ++SI+P Sbjct: 473 MWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK++ Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903 + T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYL Sbjct: 583 YKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642 Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 R+R A + + TL V + ++ + S + EC +C Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693 >gi|114635721|ref|XP_001159888.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 2 [Pan troglodytes] Length = 695 Score = 622 bits (1603), Expect = e-175, Method: Composition-based stats. Identities = 269/711 (37%), Positives = 410/711 (57%), Gaps = 23/711 (3%) Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M+ LY + ++ + L + + Y+RDF++ Y G + L Y L Sbjct: 1 MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 ING E PQ MRV++G+ E A+E YNLLS F ++PTLFN+GT PQ Sbjct: 61 KINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQ 117 Query: 368 LSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P Sbjct: 118 LSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVP 177 Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WI Sbjct: 178 MLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWI 237 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 PDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q +V + + A L Sbjct: 238 PDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQL 292 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ Sbjct: 293 WYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASL 352 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G Sbjct: 353 ALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLA 412 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 A L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D Sbjct: 413 DAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYD 472 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + T W LK+++ G+RNS +A PTA+ A I G ++SI+P Sbjct: 473 MWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEP 522 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 N+Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK++ Sbjct: 523 YTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL 582 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYL 903 + T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYL Sbjct: 583 YKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYL 642 Query: 904 RSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 R+R A + + TL V + ++ + S + EC +C Sbjct: 643 RTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 693 >gi|209171046|ref|YP_002268193.1| agip163 [Agrotis ipsilon multiple nucleopolyhedrovirus] gi|208436637|gb|ACI28864.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus] Length = 772 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 270/817 (33%), Positives = 423/817 (51%), Gaps = 53/817 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETA 201 KL ++ DG+ + +V+ C GL + V V + K + G+S +L Sbjct: 2 KLYVVKRDGSHQEVRLDEITALVQSLCYGLNAEYVDPAAVTVKVVKGVRPGVSTEELNAY 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + ++ +YA + R L++ L + + ++ + + H + Sbjct: 62 AADVAASMTYIHYDYALLAGRILVDNLHKRLDSSFSEIIKNLHGHGLVS----------- 110 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + + L + +E DF ++Y G + L + Y L I+ E PQ Sbjct: 111 ------DDLLRISETHAATLDAAIAHELDFEYKYFGYKTLENGYLLKIDNRVAERPQHML 164 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-L 380 MRVA+G+ + E A+E Y ++S F ++PTLF++GTR PQ+ SCFL V DD + Sbjct: 165 MRVALGIHGDDIED---AIETYRMMSQKLFTHASPTLFSAGTRIPQMCSCFLLGVRDDSI 221 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L + A ++KY GG+G + VR G+ I+ TNG + G+ P ++V N+ V+Q Sbjct: 222 DGIYRTLGDCAAISKYGGGIGVNVHQVRARGSKINSTNGTASGLEPMVRVFNNMVRHVDQ 281 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKRKGA+ Y+E WH D+ L+L++N G + + D+ A W+PDLFM+RV + W+ Sbjct: 282 GGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMRRVNADDMWS 341 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P + L D YG EFE YE YE E + +++ A L R ++ ETG P+ Sbjct: 342 LMCPHQCPGLADCYGDEFERLYERYE-----SEGRYRQRVRAQDLHRFIVETQVETGGPY 396 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA--NNQFDY 618 + FKD CN +S QQ++GV+ SNLC EI S +EETAVCNL SI + +D+ Sbjct: 397 MLFKDACNRKSNQQNLGVIKCSNLCAEIVQYSDAEETAVCNLASIAVNRCVRVDEMTYDF 456 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL + + VR L+ +ID N + I A++SN HR IG+G+ G A LL +PY S E Sbjct: 457 EKLKAITKVVVRNLNKIIDRNHYPIASARRSNEKHRPIGVGIQGLADAFVLLRMPYESEE 516 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I + A+ AS ELAQ G+YS+F GS +GV D Sbjct: 517 AAVLNKQIAETIYYGALEASCELAQRDGSYSTFAGSPASRGVLQYDMWNATP-------- 568 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 ++ W LK ++ G+RNS +A PTAT A I G ++S +P N+Y++ ++G+ Sbjct: 569 --SALWDWQALKDDIRAHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGE 626 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+++L + +++ + + + H GSI NIE IPD +K ++ TA+E+ +IE Sbjct: 627 FQVVNQYLIDDLIKLNVYTPEIRNAIFAHKGSIQNIEGIPDSVKNLYKTAWEMKAKRMIE 686 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS NL++ +P+ + I+ +W GLKT YYLR++ A Sbjct: 687 MAADRNAFIDQSQSFNLFVAQPTYAVMTSIHNYSWRCGLKTGMYYLRTKPAAHT------ 740 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V + D C CQ Sbjct: 741 ------QQFTVEQQQQPQCKRKRHNDKEDDDVCFSCQ 771 >gi|62084010|emb|CAI72629.1| ribonucleotide reductase, large subunit [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 769 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 254/793 (32%), Positives = 425/793 (53%), Gaps = 39/793 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196 + + KL + +G + + ++ ++ L + + + K +Y G+S Sbjct: 2 SSVGNKLYVTKRNGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTE 61 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L+ + + +YA + R +++ L + V + + ++ H + Sbjct: 62 ELDMHAARETANMAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNLVS------ 115 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 S++ + + L + + + D+ ++Y G + L + Y I E Sbjct: 116 -----------DELLSIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKIAER 164 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q MRVA+G+ ++ E A E Y+L+S F ++PTLF +GT+ PQLSSCFL T+ Sbjct: 165 IQHMLMRVAIGVHGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTL 221 Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D + GI+ L++ A+++K+ GG+G + VRG G+ I T+G + G+ L+V N+ Sbjct: 222 REDSITGIYETLRDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAV 281 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGGKRKGA+ YLE WH+DV +FL+L++N G + ++ D+ A W+PDLFM+RV Sbjct: 282 RHVDQGGKRKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKD 341 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W+L PD L D+YG +F+ Y YER E K ++ A L++ ++ E Sbjct: 342 DGVWSLMCPDRCPGLSDVYGNQFDELYAQYER-----EGKQVSQVPARDLFKFIIETQVE 396 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TG P++ +KD CN ++ Q ++G + SNLC+EI S +++ AVCNL SI + N Sbjct: 397 TGTPYMLYKDACNRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGA 456 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++ L +T V+ L+ +ID+N + +E+A+ SN HR +G+G+ G A +L +PY Sbjct: 457 FNFQTLKRITKTVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYE 516 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + E I + A+ AS ELA+ GAY S+ GS +G+ D Sbjct: 517 SDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----- 571 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 T+ W LK+R+ T G+RNS +A PTAT A I G ++S +P NLYV+ + Sbjct: 572 -----TNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVL 626 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +GDF V+N LV++L +L+DE M +++ GS+ I IP+ +K+++ T +E+ Sbjct: 627 AGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKR 686 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LIE A R + DQ+QS N+++ EP+ ++ I+ AW GLKT YYLR++ A + Sbjct: 687 LIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQF 746 Query: 915 TLKGVDGKLNAVP 927 T+ + Sbjct: 747 TVDKSKLRRRQKA 759 >gi|228861716|ref|YP_002854736.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus] gi|226425164|gb|ACO53576.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 769 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 254/793 (32%), Positives = 425/793 (53%), Gaps = 39/793 (4%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSES 196 + + KL + +G + + ++ ++ L + + + K +Y G+S Sbjct: 2 SSVGNKLYVTKRNGKKEALHLDKITSKLQRLSYNLNSEYIDPASITLQVVKTIYPGVSTE 61 Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L+ + + +YA + R +++ L + V + + ++ H + Sbjct: 62 ELDMHAARETANMAYVHHDYALLAGRIMVDNLHKNVEASFERVVERLHRHNLVS------ 115 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEM 316 S++ + + L + + + D+ ++Y G + L + Y I E Sbjct: 116 -----------DELLSIVQDNAITLESRINHSLDYEYKYFGYKTLENGYLKKIEEKVAER 164 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 Q MRVA+G+ ++ E A E Y+L+S F ++PTLF +GT+ PQLSSCFL T+ Sbjct: 165 IQHMLMRVAIGVHGRDIEN---ATETYDLMSQKFFTHASPTLFAAGTKLPQLSSCFLLTL 221 Query: 377 P-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D + GI+ L++ A+++K+ GG+G + VRG G+ I T+G + G+ L+V N+ Sbjct: 222 REDSITGIYETLRDCALISKFGGGIGVNVHDVRGRGSRIRSTDGIASGLESMLRVYNNAV 281 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QGGKRKGA+ YLE WH+DV +FL+L++N G + ++ D+ A W+PDLFM+RV Sbjct: 282 RHVDQGGKRKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKD 341 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + W+L PD L D+YG +F+ Y YER E K ++ A L++ ++ E Sbjct: 342 DGVWSLMCPDRCPGLSDVYGNQFDELYAQYER-----EGKQVSQVPARDLFKFIIETQVE 396 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TG P++ +KD CN ++ Q ++G + SNLC+EI S +++ AVCNL SI + N Sbjct: 397 TGTPYMLYKDACNRKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVENGA 456 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++ L +T V+ L+ +ID+N + +E+A+ SN HR +G+G+ G A +L +PY Sbjct: 457 FNFQTLKRITKTVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYE 516 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + E I + A+ AS ELA+ GAY S+ GS +G+ D Sbjct: 517 SDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATP----- 571 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 T+ W LK+R+ T G+RNS +A PTAT A I G ++S +P NLYV+ + Sbjct: 572 -----TNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVL 626 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +GDF V+N LV++L +L+DE M +++ GS+ I IP+ +K+++ T +E+ Sbjct: 627 AGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKR 686 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LIE A R + DQ+QS N+++ EP+ ++ I+ AW GLKT YYLR++ A + Sbjct: 687 LIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQF 746 Query: 915 TLKGVDGKLNAVP 927 T+ + Sbjct: 747 TVDKSKLRRRQKA 759 >gi|90592870|ref|YP_529823.1| RR1 [Agrotis segetum nucleopolyhedrovirus] gi|71559320|gb|AAZ38319.1| RR1 [Agrotis segetum nucleopolyhedrovirus] Length = 779 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 263/817 (32%), Positives = 424/817 (51%), Gaps = 46/817 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 +L ++ DG+ + ++ +E C L V++ +V K + G++ +L Sbjct: 2 QLHVIRRDGSRKEVHLHDIKAGIETLCFNLNKQYVNAAVVALNIMKGIRPGITTEELNVY 61 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++ ++A + R L++ L ++ + + H++ Sbjct: 62 AADVVASMTYIHHDFAVLAGRILVDDLHNKIDASFSEVVFNLHRHKLVS----------- 110 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 S+++ + + + D+ +++ G + L + Y L I+ E PQ Sbjct: 111 ------DELASVVESHGDEINEAIDHAVDYTYKFFGYKTLENGYLLKIDNQVAERPQHML 164 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380 MRVA+G+ + + A+E Y ++S F ++PTLF++GT Q+ SCFL + D + Sbjct: 165 MRVALGIHGDDIQD---AIETYRMMSRKMFTHASPTLFSAGTPMAQMCSCFLLGIRSDSI 221 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ L + A ++KY GGLG + VR G I+ TNG + GV P ++V N+ V+Q Sbjct: 222 DGIYETLGDCAAISKYGGGLGVNVHCVRSRGTRINSTNGVASGVEPMVRVFNNMVRHVDQ 281 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKRKGA+ Y+E WH D+ L+L++N G + + D+ A W+PDLFM+RV N W+ Sbjct: 282 GGKRKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMERVNANGVWS 341 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P++ L D YG FE Y YE E + +++ A L R ++ ETG P+ Sbjct: 342 LMCPNKCPGLSDCYGSAFEELYRKYEE-----EGRYQQQVRAQDLHRFIVETQVETGGPY 396 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDY 618 + +KD CN +S QQ++G + SNLC EI S +EETAVCNL SI N +FD+ Sbjct: 397 MLYKDACNRKSNQQNLGTIKCSNLCAEIVQYSDAEETAVCNLASIAVNSCVVVDEARFDF 456 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +KL + VR L+ +ID N + IE A+ SN HR IG+G+ G A LL +PY S E Sbjct: 457 EKLRHITKVVVRNLNKIIDRNRYPIESARMSNMKHRPIGVGIQGLADAFVLLRMPYESDE 516 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A+ + + E I F A+ AS ELA+ G+YSSF+GS +G+ D + Sbjct: 517 AMLLNRQIAETIYFGALEASCELAKTWGSYSSFQGSPASEGILQYDMW----------DV 566 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 TS W LK+ +K G+RNS +A PTAT A I G ++S +P N+Y++ ++G+ Sbjct: 567 RPTSLWDWGTLKEDIKKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGE 626 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VVN +L+++L + L+ M + + H GSI I+ IPD +K+++ TA+E+ +IE Sbjct: 627 FQVVNQYLIDDLIKLKLYTSEMRNAIFAHKGSIQAIDGIPDHIKRLYKTAWEMKCKRMIE 686 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QSLNL++ EP+ + I+ W GLKT YYLR++ A ++ T++ Sbjct: 687 MAADRNAFIDQSQSLNLFVAEPTYALMTSIHDYTWRSGLKTGMYYLRTKPAAHTQQFTVE 746 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + C C+ Sbjct: 747 QQFTVERGDVCKKRKINNYDEDAAQ-----NVCASCE 778 >gi|255721743|ref|XP_002545806.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] gi|240136295|gb|EER35848.1| ribonucleoside-diphosphate reductase large chain [Candida tropicalis MYA-3404] Length = 818 Score = 618 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 273/843 (32%), Positives = 436/843 (51%), Gaps = 61/843 (7%) Query: 144 KLKIMMDDGTLI-SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+ + G F+ ++ +++E L+++ VL K + ++ L T + Sbjct: 1 MVKVKVLFGETEQDFDESKVLKLLQELSFNLENLQLDDVLESVQKGLPATVTVYQLYTFI 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + I P+YA + R L KL +V ++ +++ + Sbjct: 61 AEVIASRIIYNPDYAILAGRVELRKLYLKVPYNFSDNVERLRNYKSHGA---------KS 111 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + + RD F Y G++ L + Y L I+ E+PQ F+ Sbjct: 112 YSPISSKFYEVVKKHKEFFDGLIDKSRDDEFTYFGIKTLENSYLLKIDSEPAELPQFLFL 171 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RVA+G+ L E E Y+L+S +F+ ++PTL+N+G LSSCFL + DD + Sbjct: 172 RVAIGIHL---EDLGSVAETYDLMSKKYFIHASPTLYNAGGEFNYLSSCFLIAMKDDSID 228 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L E+A+++K SGG+G VR G++I GTNG + G++P L+V N+TA V+QG Sbjct: 229 GIYKTLHESALISKASGGIGIHVHEVRSNGSYIAGTNGIANGLVPMLRVFNNTARYVDQG 288 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KR GA Y+E WH D+ + L++RKN G + RT D+ WIPDLFM+RV + WT Sbjct: 289 GGKRPGAFAIYIEPWHGDIFDILEMRKNHGSEELRTRDLFYGLWIPDLFMQRVKADEYWT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L SP E L D+YG +F+ YE YE+Q +I+ A LW +L ETG P+ Sbjct: 349 LMSPSEAPGLSDVYGDDFKELYEKYEKQGLGTKIR------AHKLWLAILESQTETGGPY 402 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 + +KD CN +S Q+++G + SSNLC EI SS EETAVCNLGS+ L + + Sbjct: 403 MLYKDACNEKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLGSLALPTYLKTSDDEVIE 462 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD++KL S + + L+ VID+ + +E A+ SN +R I LG+ G L +P+ Sbjct: 463 FDFEKLHSVTKVLAKNLNKVIDVTLYPVETAEYSNKRNRPIALGVQGLADLFAELRLPFE 522 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S A ++ + E I A+ ASVEL+ + G Y +F+GS +G+ D Sbjct: 523 SEAARKLNIQIFETIYHAALEASVELSIQDGPYETFQGSPASEGILQFDMWNHTP----- 577 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + W++LK+ ++ G+RNS +A PTA+ + I G ++ +P NLY + + Sbjct: 578 -----SKMYDWNKLKESIQKFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVL 632 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +L+ +L +W+ AM + + +GSI NI+ IP D+K+++ T +EI Sbjct: 633 SGEFQVVNKYLIKDLMDLGIWNSAMRNKIMMENGSIQNIQSIPKDIKELYKTVWEISQKV 692 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 +I+ A+ R K+IDQ+QS+N++L EP+ KL + AW GLKT YYLR+++A+ + Sbjct: 693 IIDMAADRGKFIDQSQSMNIHLREPTFGKLTSCHFYAWKQGLKTGMYYLRTQAASRAIQF 752 Query: 915 TLKGVDGKLNAVPVTDPNSSTHS-----------------------LGIPSSCTSDTECE 951 T+ + + A + P +C + E Sbjct: 753 TVDATEAEKAANEKPRGSLKRKKYLETPPRKKTVYSTPDSEVYDIHDSTPITCNIEDS-E 811 Query: 952 VCQ 954 CQ Sbjct: 812 SCQ 814 >gi|322792463|gb|EFZ16447.1| hypothetical protein SINV_80023 [Solenopsis invicta] Length = 802 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 264/758 (34%), Positives = 413/758 (54%), Gaps = 43/758 (5%) Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 V + + +Y G++ L+ ++ T+ P+YA + AR + L +E + + Sbjct: 1 SAVAIQVIRGLYSGVTTVILDNLAAETAATMATNHPDYAILAARIDVSNLHKETKKSFSE 60 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 M LY + + +++ + L + + Y+RDF++ Y+G Sbjct: 61 V--------MHDLYYARNSITNQHTPIISEHYYNIIKNNADRLDSAIIYDRDFSYNYIGF 112 Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 + L Y L ING +E PQ MRVA+G+ + +K +E YN LS +F ++PTL Sbjct: 113 KTLERSYLLKINGKIVERPQHMLMRVAVGIHENDIDKV---IETYNYLSERYFTHASPTL 169 Query: 359 FNSGTRHPQLSS---------CFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 FN+ T + Q+SS CFL T+ D + GI+ L++ ++++KY+GG+G + +R Sbjct: 170 FNACTNNQQMSSLRLISEALLCFLLTLENDSIKGIYSMLKKCSLISKYAGGIGINVHCIR 229 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRK 467 + G++ LK+ N+ AV V+QG KR GA YLE WH D+ EFL+L++ Sbjct: 230 AKS---AEDTNTTNGLVSVLKLYNEIAVYVDQGGNKRPGAFAIYLEPWHADIFEFLELKR 286 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 N GD R D+ WIPDLFM+RV + W+L P E L D++G EF+ Y YE+ Sbjct: 287 NIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMCPYESPGLADVWGDEFKELYIRYEK 346 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E + +++ A +W +L ETG P++ +KD CN +S QH+G + SNLCTE Sbjct: 347 -----EGRYRKQVEARTVWLAILRSQGETGTPYMLYKDHCNRKSNHQHLGTIKCSNLCTE 401 Query: 588 ITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 I S E AVCNL SI N+ + FD+DKL + + R LD VID+N + I + Sbjct: 402 IVEYSGPGEVAVCNLASIAVNMFVNTDTKTFDFDKLKTVAKIVTRNLDKVIDVNFYPIPE 461 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K SN HR IG+G+ G A L+ + S EA E+ + E + + A+ S ELA E+ Sbjct: 462 TKASNQKHRPIGIGIQGLADAFLLMRYSFDSKEAKELNIKIFETLYYGALECSCELAAEK 521 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y +++GS +G+ D + T WDELK ++ G+RNS +A Sbjct: 522 GTYETYQGSPVSKGILQYDMWN----------VKPTDLWNWDELKAKIAEHGVRNSLLIA 571 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PTA+ A I G ++SI+P N+YV+ +SG+F +VN L+ +L R LWDE M +++ Sbjct: 572 PMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEIL 631 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 + GS+ NIERIPDDLK ++ T +EI ++E A+ R +IDQ+QSLN+++ +P+ +KL Sbjct: 632 ANFGSVQNIERIPDDLKMLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEKL 691 Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922 ++ W GLKT YYLR++ A + + T+ + Sbjct: 692 TSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDQSKLQ 729 >gi|45185841|ref|NP_983557.1| ACR155Wp [Ashbya gossypii ATCC 10895] gi|44981631|gb|AAS51381.1| ACR155Wp [Ashbya gossypii ATCC 10895] Length = 864 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 276/821 (33%), Positives = 432/821 (52%), Gaps = 31/821 (3%) Query: 144 KLKIMMDD-GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLET 200 K+ I+ DD G +F+ ++L + + GL+ D + + + +S+L Sbjct: 6 KIFIISDDSGLTEAFDERKLLESLRKLQFGLKINDADIDKAVKRIAAGIGGDIRDSELVA 65 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA------THHEMQCLYPE 254 + + ++I + P+++ + AR ++ L + +L + + Sbjct: 66 YIGETLASMITRHPDFSLLAARVEIKVLHKRLLGLGFTGNLAVLCESGDSPEGHATKRKR 125 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 V+ L ++ ++ + + DF F Y G + L Y L G Sbjct: 126 AMSPCTRGPVRRELYDLAVQHRNI--IDQAIDDTLDFTFTYFGWKTLCKSYLLKHQGRVH 183 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E PQ FMRVA+ L + R +E Y L+++ +F+ ++PTLFN+GT LSSCFL Sbjct: 184 ETPQYMFMRVALALHGP-SGDIDRVLETYRLMANKYFIHASPTLFNAGTTSQFLSSCFLL 242 Query: 375 TVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D + GI+ AL + A+++K SGG+G + +R G++I GTNG S G++P L V N Sbjct: 243 GIHEDSIDGIYNALHKAALISKASGGIGIHVSDIRANGSYISGTNGTSNGLVPMLSVFNS 302 Query: 434 TAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+QG KR GA C YLE WH DV +FL LR+N G + R D+ WIPDLFMKR Sbjct: 303 TARYVDQGGNKRPGAFCIYLEPWHADVFDFLRLRRNHGKEEMRARDLFYGLWIPDLFMKR 362 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+LFSP+E L D YG+ FE Y YER E++ +R++ A LWR++L Sbjct: 363 VENNGEWSLFSPNEAVGLSDCYGEAFEQLYVRYER-----ELEPYRRVKAQELWREILLS 417 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF- 611 ETG P++ +KD CN +S Q+++G + SSNLC EI SS +E AVCNL S+ L Sbjct: 418 QTETGGPFMLYKDACNSKSNQKNLGTIKSSNLCCEIVEYSSRDEVAVCNLASVALPTFVS 477 Query: 612 ---ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 FDY +L S ++ R LD IDI + + +A++SN HR + LG+ G Sbjct: 478 VTSDAITFDYARLHSVVKVMTRNLDKAIDIGDYPVPEAERSNKKHRPLALGVQGLADVFM 537 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L+ P+ EA ++ E E I A+ S+ELA E G Y+SF GS +G D G Sbjct: 538 LMRFPFNGEEAAQMNREIFETIYHAAVETSIELAAEYGVYASFVGSPASKGELQFDLWGR 597 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + L WDELK+++K+ G+RNS + PTA+ + I G ++S +P Sbjct: 598 NKDNYQFLY------DDWDELKEKIKSGPGLRNSLLVGPMPTASTSQILGFTESFEPMTS 651 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +Y + +SG++T+VN ++V + +W E + + + GSI I+ IP DLK ++ T Sbjct: 652 MIYTRRVLSGEYTLVNKYMVQDFCDLGIWSEELKNRIIKDGGSIQGIDGIPPDLKDLYKT 711 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSR 906 +E+ LI+ ++ R ++DQ+QSLNL+L EP+ KL ++ AW GLKT YYLR++ Sbjct: 712 VWELPQRKLIDLSADRAPFVDQSQSLNLFLKEPTMGKLTSMHFYAWKKGLKTGMYYLRTQ 771 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 +A + + TL + V + + + S + + Sbjct: 772 AAANAIQFTLTDENTLSGPVKLREGAAVAQSPRHARYPSEE 812 >gi|229597646|pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg. gi|229597647|pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg Length = 676 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 267/695 (38%), Positives = 405/695 (58%), Gaps = 30/695 (4%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 A + AR + L +E +K M+ LY + ++ Sbjct: 2 AILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLA 53 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + L + + Y+RDF++ Y G + L Y L ING E PQ MRV++G+ E Sbjct: 54 NKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDI 110 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAK 395 A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K Sbjct: 111 DAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISK 170 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLET 454 +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR GA YLE Sbjct: 171 SAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEP 230 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++ Sbjct: 231 WHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVW 290 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EFE Y +YE+Q +V + + A LW ++ ETG P++ +KD CN +S QQ Sbjct: 291 GEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQ 345 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLD 633 ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ Sbjct: 346 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLN 405 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 +IDIN + + +A SN HR IG+G+ G A L+ P+ S EA + + E I + Sbjct: 406 KIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYG 465 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A+ AS +LA+E+G Y +++GS +G+ D + T W LK+++ Sbjct: 466 ALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKI 515 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R Sbjct: 516 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTER 575 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 LW E M + + +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSL Sbjct: 576 GLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSL 635 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 N+++ EP+ KL ++ W GLKT YYLR+R+ Sbjct: 636 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRA 670 >gi|9632159|ref|NP_048985.1| hypothetical protein PBCV1_A629R [Paramecium bursaria Chlorella virus 1] gi|2447101|gb|AAC96959.1| similar to Schizosaccharomyces ribonucleotide reductase M1 chain, corresponds to Swiss-Prot Accession Number P36602 [Paramecium bursaria Chlorella virus 1] Length = 771 Score = 616 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 263/792 (33%), Positives = 422/792 (53%), Gaps = 55/792 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188 + ++ DG+ + + ++ ++ C +GL +V +++ + Sbjct: 13 TMVVLKRDGSKENISFDKILQRIQRLCWPVNSKPVYKGSRAMTGL-NVDVSKIVASVCAS 71 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 + DG+S L+ S ++ + P+Y + AR + L+++ + + E+ Sbjct: 72 IVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDA-----YAEI 126 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 L E F +E+ + Y+RD+ F+Y G + + Y Sbjct: 127 AHLLNEDFKENLEKH--------------ADEYQAFVDYDRDYDFDYFGFKTMERLYLTK 172 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 + +E PQ ++RVA+GL + K E Y+ LS F ++PTLFNSG + QL Sbjct: 173 VGDKIVERPQHVYLRVAIGLWGSDIAKV---KETYDALSCRKFTHASPTLFNSGFKKAQL 229 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 +SCFL TV D L I+ AL + A L+K+ GGLG + + +RG GA I+GTNG+S G++P L Sbjct: 230 ASCFLMTVEDSLADIYKALGDCAQLSKHGGGLGINISDIRGRGAMINGTNGESDGIVPML 289 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + T+ NQGG+RKG+ YLE H D+ +FL +++N G++ R ++ A W+ DL Sbjct: 290 KVFDTTSAYANQGGRRKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDL 349 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV +A W+LF P E L D +G E+ Y YE E K + A +W Sbjct: 350 FMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYTRYEA-----EGKAKNVVKARDVWNT 404 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 M+T + ETG P++ KD N ++ Q + G + SNLC EI +S EETAVC +GS+ L Sbjct: 405 MVTTIIETGQPYVANKDTVNKKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLK 464 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + N++FD+D L ++ + LD ID+ + I++A+ SN R IG+G+ G Q Sbjct: 465 NYVKNDKFDFDDLRKNVKILAKNLDRSIDVMSYPIKEAETSNKRRRPIGVGVQGLQDVFF 524 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +P+ SPEA ++ E E I + A+ ASVELA+ G + +F+GS +G+ + Sbjct: 525 KLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHMWDV 584 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + S L W L++RVK G+RNS A+ PTA+ A ICG ++ +P N Sbjct: 585 TPK----------SNLDWRGLEERVKK-GVRNSLLTALMPTASTAQICGSVEAFEPITSN 633 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 LY + ++G+F VVNS+LV EL +R W E M + + + GSI + I +K ++ TA Sbjct: 634 LYSRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTA 693 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907 +++ +I+ A+ R ++DQ QS+NL+L +P+ K + + W GLK+ YYLRS+ Sbjct: 694 WDLSMKSVIDMAADRGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKP 753 Query: 908 ATSVEKSTLKGV 919 A+S T+ Sbjct: 754 ASSAIAVTVDTE 765 >gi|22788802|ref|NP_690514.1| Rr1 [Heliothis zea virus 1] gi|22671562|gb|AAN04389.1|AF451898_94 Rr1 [Heliothis zea virus 1] Length = 939 Score = 614 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 252/789 (31%), Positives = 418/789 (52%), Gaps = 51/789 (6%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD-------VSSKIVLSETYKNMYDGLSESDLE 199 I+ +G++ F+ +L +E C + + ++ ++++ K +YD +S +L+ Sbjct: 8 IVKRNGSVERFDPSKLYARIER-CMTMSEPRLTTAFINIAGIVADVEKGLYDRVSTLELD 66 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 T L + ++ P+++ + AR ++ L + + + + + Y Sbjct: 67 TLLSETCASMSTAHPDHSILAARIAMQALHKRTRSKFSETIRDLYEANIVPQYYF----- 121 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLH-INGSRIEMP 317 ++ L + + +RDF Y + L Y + +G E Sbjct: 122 ------------DLVQEHADTLDSAIVDDRDFQSLTYFAYKTLERTYLIKLADGKICERV 169 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV- 376 Q +MR A+G+ ++ E +E YNLLS+ +++ STPTL ++ T +SC+L + Sbjct: 170 QHMYMRTALGIHGRDIESV---IETYNLLSNRYYVHSTPTLCHAATNRSNYASCYLLELK 226 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + G+ L++ A ++K+ GG+G +R + IH TNG + G++P L++ N + Sbjct: 227 EDSIGGVMDTLKDAATISKHCGGVGLHVHKLRCKNSTIHSTNGNASGLVPMLRMYNAMSR 286 Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V QG KR GA+ YLE WH DV +F+++RKN+G + R D+ A W+PDLFMKRV Sbjct: 287 YVTQGGNKRPGAIAVYLEPWHADVFDFIEMRKNSGFEEARARDLFYALWVPDLFMKRVND 346 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 W+L PD L D +G+EFE Y YE+ E + R++ A LW+ ++T E Sbjct: 347 GGYWSLMCPDSSPGLSDCWGEEFEAKYTAYEQ-----EGRYVRRVDARELWKAIVTAQVE 401 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TG P+I +KD N S Q+H+G + SNLCTEI +S +ETAVC L S+NL Sbjct: 402 TGTPYILYKDTVNRNSNQRHLGTIKGSNLCTEIVEYASPDETAVCVLASVNLPKFVEGKV 461 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F+ + LA T+R R L+ +ID + I A KSN HR IG+G+ G+ AL ++ I Y Sbjct: 462 FNLNLLAKTVRLVTRNLNKIIDNALYPIPSAAKSNFKHRPIGIGVQGYADALAMMGIAYE 521 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 +++++ + E I A++ S +LA+ G Y S+ GS +G D + Sbjct: 522 --DSMQLNRDIFETIYHAALTESCQLARVHGVYESYHGSPTSRGELHFDRYSVH------ 573 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + + W L+K + G+RNS +A PTAT + + G ++S +P N+Y + Sbjct: 574 -----SQKCDWSSLRKDIARYGLRNSLLVAPMPTATTSQVFGNAESFEPFTSNMYQRRTQ 628 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F + N LV +L++ +LW++ M + Y++GSI NI IP++L++I+ T +EI Sbjct: 629 SGEFQLTNVHLVRDLERLNLWNDDMAQLIMYNNGSIQNITIIPEELRRIYKTVWEIPTKT 688 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A+ R +IDQ+QS NLY+ EP+ ++ I+ AW GLKT YYLR++SAT+ Sbjct: 689 LIDMAADRGAYIDQSQSFNLYVAEPTYSRMTSIHFYAWNKGLKTGMYYLRTKSATNAIPF 748 Query: 915 TLKGVDGKL 923 T+ L Sbjct: 749 TVDVNRCAL 757 Score = 39.1 bits (89), Expect = 3.6, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 13/75 (17%) Query: 31 VIKRNGGVTSFDPSK----ISRAIMK-------AFMAVEGKGASRSIRVQDIIKNLTEQT 79 ++KRNG V FDPSK I R + AF+ + G A + D + L + Sbjct: 8 IVKRNGSVERFDPSKLYARIERCMTMSEPRLTTAFINIAGIVADVEKGLYDRVSTL--EL 65 Query: 80 VTRLLQHNKSALIVH 94 T L + S H Sbjct: 66 DTLLSETCASMSTAH 80 >gi|256825984|ref|YP_003149944.1| ribonucleoside-diphosphate reductase subunit alpha [Kytococcus sedentarius DSM 20547] gi|256689377|gb|ACV07179.1| ribonucleoside-diphosphate reductase, alpha subunit [Kytococcus sedentarius DSM 20547] Length = 875 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 320/886 (36%), Positives = 465/886 (52%), Gaps = 100/886 (11%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193 P ++++ G + ++ VE C GL +V V ++T +YDG Sbjct: 25 EGVPTTPARTTMRVVKRSGEHEQVDVTKIVAAVERCCDGLPEVDPLRVATKTISGLYDGA 84 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 + ++L+ I ++ + EP Y+++ R L + +EV Sbjct: 85 TTAELDKLAIATAAEMTATEPQYSRLAGRLLAGVIDKEVRGQGIGS-------------- 130 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLV---YLANDLKYER----DFAFEYLGLQILYDRYF 306 F + G + L+ + F L + + + D+ F+Y GL+ +YDRY Sbjct: 131 --FSAAVRTGHEQGLIGDETAAFVAEHASRLDDAVYRAQAAHADWRFDYFGLRTVYDRYL 188 Query: 307 LHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L + +E PQ + MRV+ GL+ E AVEF+ LLSS ++ S+PTLFNSGTR Sbjct: 189 LRHPLTRAVVESPQYWLMRVSAGLSHTGEE----AVEFFELLSSLAYLPSSPTLFNSGTR 244 Query: 365 HPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 H Q+SSC+L DDL I+ + A L+K++GG+G ++ +R GA I GTNG S G Sbjct: 245 HTQMSSCYLIDSPQDDLDSIYERYHQVAKLSKFAGGIGLAFSRIRSRGALIRGTNGHSNG 304 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 ++P+L+ + + AVNQGG+RKGA C YLE WH DVEEFL+LR NTG+D RRTH++N A+ Sbjct: 305 IVPWLRTLDASVAAVNQGGRRKGAACIYLEPWHPDVEEFLELRDNTGEDARRTHNLNLAH 364 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 WIPD FM+RV + W+L PD V +L DL+G F+ AY E + D V R +SA Sbjct: 365 WIPDEFMRRVEADGQWSLIDPDAVPELPDLWGPAFDAAYRAAEERGD-----VVRTVSAR 419 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQ---------------QHVGVVHSSNLCTEI 588 L+ +M+ L +TG W+TFKD N Q Q VVH SNLCTEI Sbjct: 420 YLYGRMMRTLAQTGQGWMTFKDASNRACNQTSDDQTPRVAADGTVQPAPVVHLSNLCTEI 479 Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ----------------FDYDKLASTIRTAVRVL 632 +S++ETAVCNLGS+NL AH + D D+L ST+R AV L Sbjct: 480 IEVTSNDETAVCNLGSVNLAAHLQWSDGTTGVRPTDPAARATGIDTDRLRSTVRLAVTYL 539 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D VIDIN + E+A SN R IGLG MG Q L +P+ +PEA E++ E I Sbjct: 540 DRVIDINYYPSEQAAASNPRWRPIGLGSMGLQDVFFALRMPFDAPEAKELSTRIAEEIQL 599 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ S ELA++ GA+ +F + +G D G+ T W +++R Sbjct: 600 SALERSAELAEQFGAHPAFAETRAARGQLQHDLQGVEP----------TQTERWAAVRQR 649 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +AIAPTATIA+I G + I+P NL+ + +SG+F VN+ LV ELK Sbjct: 650 IADHGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFMQVNTALVGELKS 709 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 LW EA+ LK +GS+ I +P++ +++ TA+E+ LIE A+ RQ ++DQ+QS Sbjct: 710 LGLWTEAVREKLKADNGSVAGIADLPEETRRLFRTAWELPQKALIEMAAARQAYVDQSQS 769 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN-------- 924 LNL+++ P+ KL +Y AW GLKTTYYLRSR AT ++++T+ GV + Sbjct: 770 LNLFMESPNIGKLSSMYLYAWKAGLKTTYYLRSRPATRIQQATVAGVRAGASWGAATGAP 829 Query: 925 ----------------AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + T + S + CE C+ Sbjct: 830 GASQPTAPGSPGVVGGLTASEPVRTFTDEEALACSLENPEACEACE 875 >gi|294660114|ref|XP_462554.2| DEHA2G23276p [Debaryomyces hansenii CBS767] gi|199434472|emb|CAG91065.2| DEHA2G23276p [Debaryomyces hansenii] Length = 861 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 276/799 (34%), Positives = 427/799 (53%), Gaps = 39/799 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETA 201 +KI +F+ +L +E L +S + ++++ + D +S DL Sbjct: 6 VIKIKDKTEQYENFSKTKLLHFLENLAFELDTEYISLEEIVNKVIDGLPDLISVKDLLEL 65 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE---MQCLYPEYFCR 258 L S T I P+++ + R L++ T + +++ Y Sbjct: 66 LAESIATKIIYHPDHSILAGRVEAVNLQKMTDYTFSSNVIRLRNYKSNKTGRSYGVVSDE 125 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 Y + ++ + + L + + RD Y G++ L + Y L ++ E PQ Sbjct: 126 YFKTVMEHKHV-----------LDSIIDSRRDLELTYFGIKTLQNSYLLKLDNVVSETPQ 174 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+RVA+G+ + + +E Y L+S +F+ ++PTLFNSGT + LSSCFL + D Sbjct: 175 FMFLRVAIGIHGDDIDSV---IETYELMSQKYFIHASPTLFNSGTEYNYLSSCFLLAMED 231 Query: 379 D-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L ++A+++K SGG+G +RG G++I +NG S G++P L+V N+TA Sbjct: 232 DSIDGIYKTLHKSALISKASGGIGLHVHNIRGSGSYIASSNGTSSGLVPMLRVFNNTARY 291 Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QG KR GA Y+E WH D+ LDL+KN G + R D+ WIPDLFM+RV Q+ Sbjct: 292 VDQGGNKRPGAFAIYIEPWHCDIISILDLKKNHGKEEMRARDLFYGLWIPDLFMERVKQD 351 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+LFSPD L D YG F+ YE YE K R I A LWR +L ET Sbjct: 352 LDWSLFSPDITPGLSDCYGDAFKTLYEKYEES-----GKAIRTIKAQKLWRAILECQTET 406 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615 G P++ FKD CN +S Q+++G + SSNLC EI SS EETAVCNLGS+ L + N+ Sbjct: 407 GGPYMLFKDACNSKSNQRNLGTIKSSNLCCEIIEYSSPEETAVCNLGSLALPSFIKNSNE 466 Query: 616 --FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 +D+DKL + + + L+ +IDI + IE AK SN +R I +G+ G L +P Sbjct: 467 LEYDFDKLHTVTKVLAKNLNKIIDITKYPIESAKFSNMRNRPIAVGVQGLADLFLELRLP 526 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S +A + + E I A+ S+ELA + G Y +FKGS +G+F D Sbjct: 527 FDSNQAKVLNTQIFETIYHAAVEVSIELAIKDGPYDTFKGSPISEGLFQFDLWNHKPSQ- 585 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 WDELK + KT+G+RNS +A PTA+ + I G ++ +P N+Y + Sbjct: 586 --------LYSDWDELKLKAKTLGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYNRR 637 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 +SG+F VVN +L+ +L +W+ +M + + +GSI NI IP +LK+++ T +EI Sbjct: 638 VLSGEFQVVNKYLMKDLIDLGIWNSSMKNKIILENGSIQNIPSIPKELKQLYKTVWEISQ 697 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 +IE A+ R K+IDQ+QS+N++L +P+ KL + AW GLKT YYLR+++AT Sbjct: 698 KVIIELAADRGKFIDQSQSMNIHLQDPTFGKLTSSHFYAWEKGLKTGMYYLRTQAATRAI 757 Query: 913 KSTLKGVDGKLNAVPVTDP 931 + T+ + + V Sbjct: 758 QFTVDLAESRKLDVQPEAD 776 >gi|312066374|ref|XP_003136240.1| ribonucleoside-diphosphate reductase large subunit [Loa loa] gi|307768605|gb|EFO27839.1| ribonucleoside-diphosphate reductase large subunit [Loa loa] Length = 1038 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 256/831 (30%), Positives = 405/831 (48%), Gaps = 105/831 (12%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG + + ++ + + C GL V + + +Y G++ +L+ Sbjct: 12 YVVKRDGRHEAVSFDKIARRIMKLCYGLSQDRVDHIEISQKVIAGLYKGVTTVELDNLAA 71 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + +I K P+YA + +R + L ++ +K + LY + Sbjct: 72 EIAADMITKHPDYATLASRIAVSNLHKKT--------EKLFSKVSKRLYNATHPKSGRHM 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 ++ + L + + +ERDF + Y GL+ L Y L ING E PQ MR Sbjct: 124 PLISKNIFDIIQNNADILDSAIIHERDFCYTYFGLKTLERSYLLQINGELAERPQHMLMR 183 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382 VA+G+ + A+E YNL+S F +TPTLFNSGT PQ+SSCFL T+ D + G Sbjct: 184 VALGIHGD---NIEAALETYNLMSERWFTHATPTLFNSGTCTPQMSSCFLLTMFDDSIEG 240 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF L++ A+++K +GG+G + +R G+ I GTNG S G++P L+V N+ A Sbjct: 241 IFETLKKCALISKSAGGIGLNVHCIRATGSAIAGTNGVSNGLVPMLRVFNNAAR------ 294 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KN GD+ R D+ W+PDLFM+RV + W+L Sbjct: 295 ------------------------KNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLM 330 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P E L D +G+ FE Y YE E + +++ A LW +++ ETG P++ Sbjct: 331 CPAECPGLEDSWGEAFEKLYMQYEE-----EGRYRKQVPARKLWETIVSTQIETGMPYMV 385 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKL 621 +KD CN ++ QQ++G + SNLCTE+ L SS EE AVCNL SI L + FD+ L Sbjct: 386 YKDTCNRKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALSRFVSSEMTFDFKML 445 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + VR L+ VID N + + +A++SN HR IG+G+ G A L+ P+ S +A + Sbjct: 446 REITKVVVRNLNKVIDRNYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKARD 505 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E + + A+ AS ELA E+G Y S++ S + D G+ T Sbjct: 506 LNKRIFETMYYAALEASCELAMEQGPYESYERSP----ILQFDMWGVTP----------T 551 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W+ L+K++ G+RNS +A PTA+ A I G ++SI+P N+Y ++ +SG F V Sbjct: 552 NQWDWETLRKKIAMYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQV 611 Query: 802 V----------------------------------------NSFLVNELKQRDLWDEAMI 821 N L+N+L + DLWD+ M Sbjct: 612 KFHDTLLIRFERITSEITFLQSFLLIAFLCLEDYVISLKVFNMHLMNDLMRLDLWDDDMK 671 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS 881 ++ + GSI NIERIP +++ ++ T +E+ +I+ A R +ID +QSLN+++ P+ Sbjct: 672 LEIIKNKGSIRNIERIPQEIRDLYKTVWEMSQRDIIDMAVDRGAFIDHSQSLNIFIARPN 731 Query: 882 GKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 + ++ W GLKT YYLR+R A + T+ K A D Sbjct: 732 YGNITSMHFYGWQKGLKTGMYYLRTRPAVDAVQFTVDKTRLKDYANANADD 782 >gi|190347674|gb|EDK39996.2| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC 6260] Length = 814 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 260/798 (32%), Positives = 406/798 (50%), Gaps = 43/798 (5%) Query: 157 FNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP 214 F+ KRL +++ L + V+ + ++ DL S + P Sbjct: 27 FDPKRLRSLLDTLSYELDIEHLDLDDVVDSVAAGLPATITVDDLLLLTAESLASRTTSYP 86 Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y + R + K+++ + K L + + Sbjct: 87 DYGVLAGRVEMTKIQKSAENSFSANIAKIAKIAPNTLSSQLVS---------------VA 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 + + + + + RD+ Y ++ L Y L + E PQ FMRV++G+ ++ Sbjct: 132 EKNAEKIDGAIDHRRDYELSYFAVKTLQKSYLLVGS----ETPQYMFMRVSLGIHGQD-- 185 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAML 393 A+E Y +S +F+ ++PTLFNSGT + LSSCFL + D + GI+ L E A++ Sbjct: 186 -VNSAIETYTYMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALI 244 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452 +K SGG+G +R G+ I ++G S G++P L+V N+TA V+QG KR GA YL Sbjct: 245 SKASGGIGLHVHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYL 304 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH D+ E LDL+KN G + R D+ A WIPDLFM+RV + W+ FSPD+ L + Sbjct: 305 EPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLEN 364 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG+EF+ YE+YE + + + A LW +L ETG P++ +KD CN +S Sbjct: 365 CYGEEFKRLYESYEA-----KGLAMKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSN 419 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 Q+++G + SSNLC E+ SS +E AVCNLGS+ L N+ FD L + V L Sbjct: 420 QKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNL 479 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VID+ + +E A+ SN HR I +G+ G L +P+ SP A E+ + E I Sbjct: 480 NKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYH 539 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ ASVELA + G Y +F GS +G+ D WDELK++ Sbjct: 540 AAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSD---------LYTDWDELKQK 590 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V GMRNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +LV +L + Sbjct: 591 VVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTE 650 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +LW++ M + GS+ NI+ IP ++ + T ++I +I+ A R K+IDQ+QS Sbjct: 651 LNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDISQRTIIDMAVDRAKFIDQSQS 710 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 LN+++ P+ KL + AW GLKT YYLR++SA+ + T+ G+ A P+ Sbjct: 711 LNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSSA--ATPLKRK 768 Query: 932 NSSTHSLGIPSSCTSDTE 949 + P + E Sbjct: 769 IDEVYESSFPGTGELTPE 786 >gi|150864273|ref|XP_001383025.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces stipitis CBS 6054] gi|149385529|gb|ABN64996.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces stipitis CBS 6054] Length = 891 Score = 609 bits (1569), Expect = e-171, Method: Composition-based stats. Identities = 273/834 (32%), Positives = 421/834 (50%), Gaps = 36/834 (4%) Query: 133 SHSKSDAPIAPKLKIMMDDGT---LISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYK 187 S D K+ D + F+ KRL + + + L + ++S Sbjct: 11 QSSDGDGNSDSKVNQHKSDDSFTKREDFDIKRLSRFLLKLTTNLDVKHLDLDSIVSTVEV 70 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 + ++ +L + + + P+YA + R ++++ V T+ K +H Sbjct: 71 GLPAKVTLDELYGLVSETLASRTIYHPDYALLAGRVAARRIQKHVSTSFSGAVIKLWNHR 130 Query: 248 MQCLYPEYF-CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 + ++ + + ++ +RDF Y ++ L Y Sbjct: 131 SSVTNNRSNGNKTSRTYSIVSESLYKIVMQHRHFFDSLIEKDRDFDLTYFAIKTLERSYL 190 Query: 307 LHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 L IN E PQ F+RVA+G+ + VE Y L+SS +F+ ++PTLFN+G+ + Sbjct: 191 LKINDEMAETPQYMFLRVAIGIHGNNLDDV---VETYELMSSRYFIHASPTLFNAGSEYN 247 Query: 367 QLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 LSSCFL + DD + GI+ L + A+++K SGG+G + +R G+ I TNG S G++ Sbjct: 248 YLSSCFLVDMEDDSIDGIYKTLHKTALISKASGGIGLNVHNIRASGSLIASTNGTSSGLV 307 Query: 426 PFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 P L+V NDTA V+QG KR GA Y+E WH D+ LD++KN G + R D+ A W Sbjct: 308 PMLRVFNDTARYVDQGGNKRPGAFAIYIEPWHADIFSVLDMKKNHGKEELRARDLFFALW 367 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFM++V + W LFSPDE L D YG EF Y YE E + + A Sbjct: 368 IPDLFMQKVKDDEDWCLFSPDEAPGLADCYGDEFVDLYNQYEA-----EGRARTVVKAHK 422 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LW +L ETG P++ +KD CN +S Q+++G + SSNLC EI SSEETAVCNLGS Sbjct: 423 LWLAILESQTETGGPYMLYKDSCNRKSNQKNLGTIKSSNLCCEIVEYCSSEETAVCNLGS 482 Query: 605 INLLAHFANN----------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + L A + +FD++KL S + R L+ VID+ + +E K SN HR Sbjct: 483 LALPAFIKSVSIDNSDEEVLEFDFEKLHSITKVLTRNLNKVIDVTLYPVESTKVSNMKHR 542 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 I LG+ G L +P++S EA ++ + E I A+ ASVELA G Y+SF+GS Sbjct: 543 PIALGVQGLADVFLELRLPFSSDEAKKLNIQIFETIYHAAVEASVELAMSEGPYNSFEGS 602 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +G+ D WD LK+ VKT G+RNS +A PTA+ + Sbjct: 603 PASKGILQFDLWDHKPSELYN---------DWDSLKESVKTHGLRNSLLVAPMPTASTSQ 653 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G ++ +P NLY + ++G++ V N +LV +L LW+ A+ + + +GSI NI Sbjct: 654 ILGYNECFEPYTSNLYTRRVLAGEYQVANKYLVKDLIDLGLWNSAVRNKIIVDNGSIQNI 713 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWL 894 IP +LK+++ T +EI +I+ A+ R K+IDQ+QS+N++L P+ KL + W Sbjct: 714 SSIPQELKELYKTVWEISQKVIIDMAADRGKFIDQSQSMNIHLQNPTFGKLTSCHFYGWQ 773 Query: 895 MGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 GLKT YYLR+++A+ + T+ + + S H + + Sbjct: 774 KGLKTGMYYLRTQAASRAIQFTVNNEEIENMDTAPGATIKSLHRKRYKQVDSVE 827 >gi|254584212|ref|XP_002497674.1| ZYRO0F10956p [Zygosaccharomyces rouxii] gi|238940567|emb|CAR28741.1| ZYRO0F10956p [Zygosaccharomyces rouxii] Length = 875 Score = 608 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 281/806 (34%), Positives = 434/806 (53%), Gaps = 34/806 (4%) Query: 156 SFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 +N + + E GL + ++ + + D + + + +L Sbjct: 16 EYNPPLMRQKLRELSFGLNLDYLDFDKIVQKISSGVPDDVEGWQVIRHAAETVASLTSIH 75 Query: 214 PNYAKVTARFLLEKLRREVLT-TVYKKPQKATH--------HEMQCLYPEYFCRYIEEGV 264 P+++ + AR +++L + + T + ++ + R ++GV Sbjct: 76 PDHSILAARLEIDELHKSLRGITFTENLKQLRSSTRVTSEGDNRVPSKRQKVMRAPKKGV 135 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323 + + + ++ L + + +ERDF F Y G + L Y + N E PQ FMR Sbjct: 136 ISEEFLQMALKYE-KKLNDAIVHERDFNFTYFGWKTLCQSYLIKKNADQIHETPQFLFMR 194 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYG 382 VA+ + +E Y L+S +F+ ++PTLFN+GT + LSSCFL + D + G Sbjct: 195 VALAIHGPFE-DIDSVIETYELMSRKYFIHASPTLFNAGTVNQYLSSCFLVGMKEDSIEG 253 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 IF L++ A+++K SGG+G + +R GAH+ G+NG S G++P L+V N+TA V+QG Sbjct: 254 IFKTLEDTALISKASGGIGIHVSNIRASGAHVSGSNGTSNGIVPMLRVFNNTARYVDQGG 313 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 KR GA C YLE WH DV +FL LRKN G D R D+ A WIPDLFMKRV N W+L Sbjct: 314 NKRPGAYCIYLEPWHSDVFDFLQLRKNHGKDELRARDLFFALWIPDLFMKRVQCNGEWSL 373 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FSPDE L D+YGKEFE YE YE A +++ A LW ++L ETG P++ Sbjct: 374 FSPDEAPGLSDVYGKEFEELYEQYEATAL-----PMKRVKAQKLWSEILQAQVETGGPFM 428 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----FANNQF 616 +KD CN++S Q+++G + SSNLC EI SS +ETAVCNL S+ L + F Sbjct: 429 LYKDSCNLKSNQKNLGTIKSSNLCCEIVEYSSKDETAVCNLASVALPTFVVQVTNKGSIF 488 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ KL + ++T R LD VID+ + I +A+ SN +R +G+ G +L IPY S Sbjct: 489 DFVKLHAVVKTITRNLDRVIDVCKYPIPQAQYSNLRNRPEAIGVQGLADVFLMLRIPYES 548 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + + E I A+ S+ELA+E GAY +F+GS QG+ D GL + D L Sbjct: 549 QEARILNTQIFETIYHAAVETSIELAEEYGAYETFQGSPASQGLLQFDLWGLNEDNYDFL 608 Query: 737 AMNRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W ELK R++ G+RNS + PTA+ + I G ++S +P N+Y + + Sbjct: 609 Y------RDWGELKHRIQNGRGLRNSLLLGPMPTASTSQILGYTESFEPMTSNVYARRVL 662 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VN ++V+ Q +W+E + + + +GS+ NI+ +PD +KKI+ T +EI Sbjct: 663 SGEFINVNQYMVDHFCQLGIWNEKLKNRIIADNGSVQNIQGLPDWIKKIYRTVWEIPQRP 722 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI+ A R +IDQ+QSLNL++ P+ KL ++ AW GLKT YYLR+++A++ + Sbjct: 723 LIDMARDRSPFIDQSQSLNLFMKTPTMGKLTSMHFHAWRHGLKTGMYYLRTQAASAAIQF 782 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGI 940 T+ + +V + + I Sbjct: 783 TVNDENTLTGSVELNGSDEEESKTPI 808 >gi|282174153|ref|YP_003358255.1| ORF116 [Anguillid herpesvirus 1] gi|281308996|gb|ADA57879.1| ORF116 [Anguillid herpesvirus 1] Length = 833 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 247/812 (30%), Positives = 392/812 (48%), Gaps = 65/812 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200 + G +++K++ +E GL V +++ T +YDG++ +L+ Sbjct: 2 DNFSVRKHSGRTEMWSTKKMLSKLESLSYGLNTDFVDLDRLVTATMDGLYDGITTKELDD 61 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + ++ +Y+ + R ++ + + + + M P + Sbjct: 62 VMARTAAGFTSYHFDYSLLAGRIVVNSIHKYTVGNFLQGAVLL--QNMDETKPHVTDELV 119 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 K + + Y RD+ F + ++ L Y L +N +E PQ Sbjct: 120 AVARKYE-----------NQIQGAIDYSRDYTFNFFAIRTLERAYLLKVNERVMERPQHL 168 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDD 379 FMR+A+G+ + +E Y LS F ++PTLF++GT +L+SC+L T+ D Sbjct: 169 FMRIAIGIHG---FDLESVLETYRCLSEKRFSHASPTLFHAGTNFAKLASCYLVTLADDS 225 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ LQE A +AK SGG+G + VR G+ I+ TNG + G++P L+V N V+ Sbjct: 226 IAGIYSTLQECAQIAKCSGGIGAAISNVRAEGSAINSTNGTANGLVPMLRVFNAMTRMVD 285 Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG KR GA+ +LE WH D+ +LDL+KN GDD R D+ WI DLFM+RV + Sbjct: 286 QGGNKRPGAMAVWLEPWHADIAAWLDLKKNLGDDGIRARDLFYGLWISDLFMERVKDDQM 345 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+L P + L D+YG +F Y YE Q +++ A LW +L E G Sbjct: 346 WSLMCPKKCPGLMDVYGSDFVALYTKYESQGM-----YVKQVEARELWTHILRSQMENGM 400 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--- 615 P++ +KD CN +S QQHVGVV NLCTEI S AVCNL ++ L A Sbjct: 401 PFMMYKDSCNRKSNQQHVGVVKCGNLCTEIVEVSEPHRPAVCNLAAVCLPTCVACECGIR 460 Query: 616 --------------------------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 FD+ +L V+ L+ VID + + + A Sbjct: 461 QASRTEVASSASSAVQACEDPTCRKSFDFGELGRLTEVLVKNLNRVIDKSDYAFDGANHR 520 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N R +G+G+ G +L + + EA + + E + +HA++AS +LA+E Y Sbjct: 521 NSQDRPLGIGVQGLADVFAMLGLAFDGTEAARLNVQIFETMYYHAMAASCKLAEEDQPYP 580 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 ++KGS QG+F D G + ++ W LK+RV+ G+RNS +A PT Sbjct: 581 TYKGSPVSQGIFQFDMWG----------VKPSAMHDWTSLKRRVQKYGVRNSLLLAPMPT 630 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ A I G +++ +P NL+ + +SGDF ++N LV EL + +W E L +G Sbjct: 631 ASTAQIFGNNEAFEPFTNNLFTRGVLSGDFQIINPHLVRELIRLGMWGEETRMRLMADNG 690 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI E +P + + T +EI +I A+ R +IDQ+QSLN+++ +P+ KL ++ Sbjct: 691 SIRTWEDVPQHTRDVFKTVWEISQKTIINMAADRAPFIDQSQSLNIHMADPNVSKLSSMH 750 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 W GLKT YYLRSR A + + T+ Sbjct: 751 MYGWQKGLKTGMYYLRSRPAVNAIQFTVDKTK 782 >gi|17158276|ref|NP_477694.1| wsv172 [Shrimp white spot syndrome virus] gi|6165659|gb|AAF04636.1|AF099142_4 large subunit of ribonucleotide reductase [shrimp white spot syndrome virus] gi|15021484|gb|AAK77761.1|AF369029_92 ORF92, putative ribonucleotide reductase large subunit (RR1) [shrimp white spot syndrome virus] gi|17016570|gb|AAL33176.1| wsv172 [shrimp white spot syndrome virus] gi|19481820|gb|AAL89096.1| WSSV228 [shrimp white spot syndrome virus] Length = 848 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 261/852 (30%), Positives = 418/852 (49%), Gaps = 60/852 (7%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACS---------GLQDVSSKIVLSETYKNMYDGLSESD 197 I +GT + +++ +E AC ++ + + S + +S + Sbjct: 10 ISKRNGTKQEISLEKIIKRIENACLPVNQYVPKLDKNAINPQELASHIMDRLPATISFQE 69 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ L ++T I P++ K+ RF+ + + Q L Sbjct: 70 MDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKNTKEWNS------FSATTQKLRHAIHP 123 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-----INGS 312 + + + + L + Y+ D+ F GL+ L Y + Sbjct: 124 GTGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKIGSPTDRKK 183 Query: 313 RI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 RI E PQ MRVA+G+ + + +E Y+L+S +F ++PTLFN GT PQLSS Sbjct: 184 RILVERPQDMIMRVAVGIHGSDIKSV---IETYDLMSRHYFTHASPTLFNCGTVTPQLSS 240 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL + DD + GI+ L+E A+++K +GGLG + +R G+ I +G G++ FL+ Sbjct: 241 CFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTHPGLMAFLQ 300 Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + N + V+QG KR+GA Y+ WH+DV++F+D RKN G++ RT D+ A W+ DL Sbjct: 301 IFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLFPAIWVSDL 360 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV W+L P E L D++G+EF+ YE YE E K + A AL+ + Sbjct: 361 FMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEA-----EGKGKEVVKARALFDQ 415 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 + + ETG P++ FKD N +S Q++VG++ SSNLCTEI S SEETAVCNL SI + Sbjct: 416 INSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLASIAVN 475 Query: 609 AHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 DY ++ ++ R LD VID+N + ++K + SN R +GLG+ Sbjct: 476 KFVKYSPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPMGLGVQ 535 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720 G L IP+ S EA I E I + A+ AS E+A+E+ Y F+GS +G+ Sbjct: 536 GLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGI 595 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 F D + RD + N W++L++ + G+ NS +A PTA+ A I G S+ Sbjct: 596 FQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSE 654 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S +P N+Y ++ +SG F VVN +++ EL + W+ + GSI + IP Sbjct: 655 SFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKS 714 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 K++ T +EI+P ++ A +R ++DQAQSLNL+++EP K+ + AW G+KT Sbjct: 715 TKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKTL 774 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIP 941 YYLR++ A + T+ + P + + + Sbjct: 775 YYLRTKGAARAVQFTVDKNVLQEVKKEAPSPVAAFSAPVREEEEEKKSSIVVPDPAAALL 834 Query: 942 SSCTSDTECEVC 953 S + CE+C Sbjct: 835 CSINNPGACEMC 846 >gi|14581686|gb|AAK69359.1|AF132669_1 ribonucleotide reductase large subunit RR1 [shrimp white spot syndrome virus] Length = 848 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 261/852 (30%), Positives = 418/852 (49%), Gaps = 60/852 (7%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACS---------GLQDVSSKIVLSETYKNMYDGLSESD 197 I +GT + +++ +E AC ++ + + S + +S + Sbjct: 10 ISKRNGTKQEISLEKIIKRIENACLPVNQYVPKLDKNAINPQELASHIMDRLPATISFQE 69 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ L ++T I P++ K+ RF+ + + Q L Sbjct: 70 MDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKNTKEWNS------FSATTQKLRHAIHP 123 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-----INGS 312 + + + + L + Y+ D+ F GL+ L Y + Sbjct: 124 GTGKPASVVNDTYYENVMANAEILDAVIDYKMDYLFTCFGLRTLEYSYLIKIGSPTDRKK 183 Query: 313 RI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 RI E PQ MRVA+G+ + + +E Y+L+S +F ++PTLFN GT PQLSS Sbjct: 184 RILVERPQDMIMRVAVGIHGSDIKSV---IETYDLMSRHYFTHASPTLFNCGTVTPQLSS 240 Query: 371 CFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 CFL + DD + GI+ L+E A+++K +GGLG + +R G+ I +G G++ FL+ Sbjct: 241 CFLLGLQDDSIEGIYDTLKEAAIISKTAGGLGIHFHDLRAKGSPISSWSGTHPGLMAFLQ 300 Query: 430 VANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + N + V+QG KR+GA Y+ WH+DV++F+D RKN G++ RT D+ A W+ DL Sbjct: 301 IFNVSVKKVSQGGDKRRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLLPAIWVSDL 360 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FM+RV W+L P E L D++G+EF+ YE YE E K + A AL+ + Sbjct: 361 FMERVKAGKNWSLMCPHECPGLSDVHGEEFKALYEKYEA-----EGKGKEVVKARALFDQ 415 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 + + ETG P++ FKD N +S Q++VG++ SSNLCTEI S SEETAVCNL SI + Sbjct: 416 INSARIETGTPYVCFKDTINRKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLASIAVN 475 Query: 609 AHFANN-------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 DY ++ ++ R LD VID+N + ++K + SN R +GLG+ Sbjct: 476 KFVKYFPIPSLRPYVDYREMKRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPMGLGVQ 535 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720 G L IP+ S EA I E I + A+ AS E+A+E+ Y F+GS +G+ Sbjct: 536 GLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGI 595 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 F D + RD + N W++L++ + G+ NS +A PTA+ A I G S+ Sbjct: 596 FQFDMGKENIKNRD-IYFNSLPIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSE 654 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S +P N+Y ++ +SG F VVN +++ EL + W+ + GSI + IP Sbjct: 655 SFEPLTSNMYNRNVLSGSFQVVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKS 714 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900 K++ T +EI+P ++ A +R ++DQAQSLNL+++EP K+ + AW G+KT Sbjct: 715 TKELFKTVWEINPRTTLDMAIQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKTL 774 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS-------------------STHSLGIP 941 YYLR++ A + T+ + P + + + Sbjct: 775 YYLRTKGAARAVQFTVDKNVLQEVKKEAPSPVAAFSAPVREEEEEKKSSIVVPDPAAALL 834 Query: 942 SSCTSDTECEVC 953 S + CE+C Sbjct: 835 CSINNPGACEMC 846 >gi|300706935|ref|XP_002995698.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01] gi|239604894|gb|EEQ82027.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01] Length = 738 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 256/784 (32%), Positives = 421/784 (53%), Gaps = 53/784 (6%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 LQ+V + + Y + +S ++ T + ++ +++ P Y K++AR L+ L Sbjct: 3 LQNVDKNYFIDKVYNGWCEDMSSFEMITFVSETAASMMTINPEYGKLSARILICHLHEIT 62 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 T +K Y + + I + ++ + + + + Y +D+ Sbjct: 63 FNTFSEKII----------YLQKYRNIINPEIYEIVV------KNREIIDDIIDYTKDYD 106 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + + L Y +N IE PQ FMRVA+ + ++ E Y+L+S+ +F Sbjct: 107 LTFFSITSLMKSYLFRVNDEVIERPQDIFMRVALQIHRD---NWEKVKETYDLMSNHYFT 163 Query: 353 CSTPTLFNSGTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL+NS T QL+SCFL + D + GI+ L++ A+++K+SGG+G + +R G Sbjct: 164 HATPTLYNSCTIRSQLASCFLLSPINDSIEGIYDTLKQCAVISKHSGGIGLNLHSIRCNG 223 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA-VCAYLETWHIDVEEFLDLRKNTG 470 + + T GKS+G+IP ++V N T +NQGG R+ + + YLE WH D+ +FLDLRKNTG Sbjct: 224 SDLVSTGGKSRGIIPLIQVINSTKKYINQGGNRRSSSMAIYLEPWHKDIFDFLDLRKNTG 283 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + R D+ TA WI DLFM+RV +N W+LF P+E L D++G++F Y YER Sbjct: 284 SEDIRARDIFTALWINDLFMERVDKNEEWSLFCPNEAKGLDDVWGEDFNKLYTKYER--- 340 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 K + A LW+ ++ ETG P++ +KD CN S QQ++G++ SSNLC EI Sbjct: 341 ---TKNRTVVKARKLWKAIIEAQIETGTPYMLYKDTCNRLSNQQNLGIIKSSNLCAEIIE 397 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 S E AVCNL S+ L +FD+++L+ ++ R L+N ID + +E+ K+SN Sbjct: 398 YSDKNEIAVCNLASVCLSRFVREGKFDFEELSKIVKVITRNLNNCIDSTFYPVEECKRSN 457 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A L+ P+ S A ++ + E I + A+ SVELA+E G Y + Sbjct: 458 FRHRPIGIGVQGLADAFVLMRYPFDSQNARDLNFKIFETIYYSALEESVELAKEYGPYET 517 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F GS +G+F + ++ W+ L++++K G+RNS ++ PTA Sbjct: 518 FAGSPLSKGIFHFELCKKKVPNLEK----------WNLLREKIKKHGVRNSLLVSPMPTA 567 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + + I ++ +P N+Y + +G+F +VN +L+ +L +LW M + + ++GS Sbjct: 568 STSQIFNNNECFEPFTSNIYTRRTHAGEFQIVNQYLLKDLINLNLWSHEMKNLIIEYEGS 627 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I NI+ IP D+K ++ TA+E+ +I+ A+ RQ +IDQ+QSLNL++ +P+ KL ++ Sbjct: 628 IQNIKSIPQDIKDLYKTAWELKMKHVIDLAADRQLFIDQSQSLNLFVAQPTYSKLSSMHF 687 Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 A+ GLKT YYLR+R TS K T+ + S +D Sbjct: 688 YAFKSGLKTGMYYLRTRPITSAIKFTVD---------------QKLLEKTMSSINDNDEV 732 Query: 950 CEVC 953 C+ C Sbjct: 733 CDAC 736 >gi|155370864|ref|YP_001426398.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella virus FR483] gi|155124184|gb|ABT16051.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella virus FR483] Length = 765 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 255/791 (32%), Positives = 405/791 (51%), Gaps = 55/791 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188 ++ ++ DG+ + + ++ + C +GL V +++ + Sbjct: 8 RMNVIKRDGSTEAVSFDKIMTRISRLCWPENGKPTHKGSRAQNGLA-VDISRIVASICAS 66 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 + D ++ L+ + +L P+Y + AR + L+++ ++ T+ ++ Sbjct: 67 IVDNITTVQLDDLTADKAASLTTLNPDYGILAARIAISNLQKQTSDSIVD-----TYTKL 121 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 + L + F + F F+Y G + Y Sbjct: 122 EHLLSDEFMNLVRTYGDQYQGFIDYDRD--------------FDFDYFGFSTMQRLYLTK 167 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 + IE PQ ++RVA+ L + E+ E Y+ LS F ++PTLFN+G + L Sbjct: 168 VGSKIIERPQHTYLRVAIALWGSDIERV---KETYDALSRRKFTHASPTLFNAGFKKANL 224 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 +SCFL D L IF L + A L+KY GG+G + +RG GA I GTNG+S G++P L Sbjct: 225 ASCFLVHCNDSLSDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESDGIVPML 284 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + T+ NQGG+RKG+ YLE H D+ +FL LR+N G++ R ++ A W+ DL Sbjct: 285 KVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDL 344 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV +A W+L P E L D+YGKE+E Y YE E K R + A +W Sbjct: 345 FMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYE-----SEGKAKRVVKARDVWNT 399 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 M+T ETG P++ KD N ++ Q + G + SNLC EI +S EETAVC +GSI L Sbjct: 400 MVTTQIETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLK 459 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + N+ FD++ L ++ + LD ID+ + + +A+ SN R +G+G+ G Q Sbjct: 460 NYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFF 519 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +P+ S +A ++ E E I F A+ AS EL+ E G + +F+GS +G+ G+ Sbjct: 520 QLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGV 579 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + L W L+ RVK G+RNS A+ PTA+ A ICG ++ +P N Sbjct: 580 TPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAAEPITSN 628 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + ++G+F VVNS+LV EL R W E M + + + GSI + I D+K ++ T+ Sbjct: 629 IYSRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVKAVYKTS 688 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907 +EI +I+ A+ R ++DQ QS+NL+L P+ K + + AW GLKT YY+RS+ Sbjct: 689 WEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKP 748 Query: 908 ATSVEKSTLKG 918 A + T+ Sbjct: 749 AANAIAVTVDE 759 >gi|322815075|gb|EFZ23824.1| ribonucleoside-diphosphate reductase large chain, putative [Trypanosoma cruzi] Length = 731 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 265/747 (35%), Positives = 402/747 (53%), Gaps = 36/747 (4%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198 +A L + DG+L SF++ +L +E GL V KI+ ++D +S +L Sbjct: 2 LATDLTVRKRDGSLQSFDANKLFARIERVSHGLDPNYVDVKILTEIVVGGVHDEISTVEL 61 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + + ++ + K P+Y + R + L + +V + L+ Sbjct: 62 DKLIAETAAYSVTKHPDYGLMGGRLCVTALHKTTSASVLET--------FSILHKHKIHD 113 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-----FLHINGSR 313 ++ L + Y+RD FE+ G + L Y Sbjct: 114 TGRAAPLLSDEVWEIVQRHHEQLQRMVNYDRDMRFEFFGYKTLERSYLLRVDRGRGEREI 173 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E PQ F+RVA+G+ ++ E+ E Y+ +S +F +TPTLFN+GT PQ+SSCFL Sbjct: 174 AERPQQMFLRVALGIHGEDMERV---KETYDHMSLGYFTHATPTLFNAGTPFPQMSSCFL 230 Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + D + GI+ L++ A+++K +GG+G +R G++I GTNG+S G++P L+V N Sbjct: 231 VAMREDSIEGIYDTLKQCAVISKSAGGIGVHVHNIRCSGSYIAGTNGQSNGLVPMLRVWN 290 Query: 433 DTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 +TA V+QGG KRKGA YLE WH D+ FL L+KNTG + R D+ A WIPDLFM+ Sbjct: 291 NTARYVDQGGGKRKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFME 350 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV WTL P L D YG +F+ YE YER E + + + A +LW +L Sbjct: 351 RVKSGGKWTLMDPHTAPGLSDCYGDDFKKLYEGYER-----ENRGVKTVQAQSLWFAILE 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH- 610 + ETG P++ +KD CN +S Q++VGV+ SNLCTEI +S +E AVCNL SI L Sbjct: 406 LQMETGVPFMLYKDACNRKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFV 465 Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +D+ +L + + L+ VID N + + ++++SN +R IG+G+ G L Sbjct: 466 DKERKIYDHQRLYEVTKIVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFIL 525 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + +P+ EA + ++ E I + A+ ASVELA+ G Y+ F GS QG D Sbjct: 526 MRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQK 585 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ R WD LKKR+ GMRNS +A PTA+ + I G ++ +P N+ Sbjct: 586 P---------RSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 YV+ +SG+F VVN +LV +L +R LW+E M + + ++GS+ NI IP+DLK+++ + Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLY 876 EI LIE A R K+IDQ+QSLNL+ Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLF 723 >gi|155122463|gb|ABT14331.1| hypothetical protein MT325_M777L [Paramecium bursaria chlorella virus MT325] Length = 765 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 251/791 (31%), Positives = 400/791 (50%), Gaps = 55/791 (6%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLSETYKN 188 ++ ++ +G+ + + ++ + C +GL V +++ + Sbjct: 8 RMNVIKRNGSSEAVSFDKIMTRISRLCWPENGKPTHRGSRAQNGLA-VDISRIVANICAS 66 Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 + D ++ L+ + +L P+Y + AR + L+++ ++ T+ ++ Sbjct: 67 IVDNITTVQLDDLTADKAASLTTLNPDYGILAARIAISNLQKQTSDSIVD-----TYSKL 121 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 + L + F + + Y Sbjct: 122 EHLLSDEFMNLVRTHGDQYQAFIDYDRDFDFDYFGF--------------ATMQRLYLTK 167 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 + IE PQ ++RVA+ L + E+ E Y+ LS F ++PTLFN+G + L Sbjct: 168 VGSKIIERPQHTYLRVAIALWGSDIERV---KETYDALSRRKFTHASPTLFNAGFKKANL 224 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 +SCFL D L IF L + A L+KY GG+G + +RG GA I GTNG+S G++P L Sbjct: 225 ASCFLVHCNDSLTDIFKCLGDVAQLSKYGGGIGLHMSDIRGRGAEIRGTNGESDGIVPML 284 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + T+ NQGG+RKG+ YLE H D+ +FL LR+N G++ R ++ A W+ DL Sbjct: 285 KVFDTTSAYANQGGRRKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDL 344 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV +A W+L P E L D+YGKE+E Y YE E K R + A +W Sbjct: 345 FMKRVETDAQWSLLDPHECPGLSDVYGKEYEELYTKYE-----SEGKAKRVVKARDVWNT 399 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 M+T ETG P++ KD N ++ Q + G + SNLC EI +S EETAVC +GSI L Sbjct: 400 MVTTQMETGMPYVLNKDSVNAKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLK 459 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + N+ FD++ L ++ + LD ID+ + + +A+ SN R +G+G+ G Q Sbjct: 460 NYVKNDAFDFEDLRKHVKVLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFF 519 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +P+ S +A ++ E E I F A+ AS EL+ E G + +F+GS +G+ G+ Sbjct: 520 QLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGV 579 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + L W L+ RVK G+RNS A+ PTA+ A ICG ++ +P N Sbjct: 580 TPQ----------TALDWAGLESRVKK-GVRNSLTTALMPTASTAQICGSVEAAEPITSN 628 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + ++G+F VVNS+LV EL R W EAM + + + GSI + I D+K ++ T+ Sbjct: 629 IYSRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTS 688 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRS 907 +EI +I+ A+ R ++DQ QS+NL+L P+ K + + AW GLKT YY RS+ Sbjct: 689 WEISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKP 748 Query: 908 ATSVEKSTLKG 918 A + T+ Sbjct: 749 AANAIAVTVDE 759 >gi|146414790|ref|XP_001483365.1| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC 6260] Length = 814 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 260/822 (31%), Positives = 403/822 (49%), Gaps = 61/822 (7%) Query: 157 FNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP 214 F+ KRL +++ L + V+ + ++ DL S + P Sbjct: 27 FDPKRLRSLLDTLSYELDIEHLDLDDVVDSVAAGLPATITVDDLLLLTAESLASRTTSYP 86 Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 +Y + R + K+++ K L + + Sbjct: 87 DYGVLAGRVEMTKIQKLAENLFSANIAKIAKIAPNTLSSQLVS---------------VA 131 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 + + + + + RD+ Y ++ L Y L + E PQ FMRV++G+ ++ Sbjct: 132 EKNAEKIDGAIDHRRDYELSYFAVKTLQKSYLLVGS----ETPQYMFMRVSLGIHGQD-- 185 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAML 393 A+E Y +S +F+ ++PTLFNSGT + LSSCFL + D + GI+ L E A++ Sbjct: 186 -VNSAIETYTYMSQKYFIHASPTLFNSGTNYNHLSSCFLLAMKEDSIDGIYKTLHETALI 244 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYL 452 +K SGG+G +R G+ I ++G S G++P L+V N+TA V+QG KR GA YL Sbjct: 245 SKASGGIGLHVHNIRASGSRIASSSGTSSGLVPMLRVFNNTARYVDQGGNKRPGAFAIYL 304 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 E WH D+ E LDL+KN G + R D+ A WIPDLFM+RV + W+ FSPD+ L + Sbjct: 305 EPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFSPDQAPGLEN 364 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG+EF+ YE+YE + + + A LW +L ETG P++ +KD CN +S Sbjct: 365 CYGEEFKRLYESYEA-----KGLAMKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSN 419 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 Q+++G + SSNLC E+ SS +E AVCNLGS+ L N+ FD L + V L Sbjct: 420 QKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVKNDNFDSQLLHKVTKVLVNNL 479 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + VID+ + +E A+ SN HR I +G+ G L +P+ SP A E+ + E I Sbjct: 480 NKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYH 539 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A+ ASVELA + G Y +F GS +G+ D WDELK++ Sbjct: 540 AAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSD---------LYTDWDELKQK 590 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V GMRNS +A PTA+ + I G ++ +P N+Y + ++G+F VVN +LV +L + Sbjct: 591 VVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTE 650 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +LW++ M + GS+ NI+ IP ++ + T ++I +I+ A R K+IDQ QS Sbjct: 651 LNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDILQRTIIDMAVDRAKFIDQLQS 710 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 LN+++ P+ KL + AW GLKT YYLR++SA+ + T+ G+ + Sbjct: 711 LNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTVSGLSSAATPLKRKID 770 Query: 932 NSST-----------------HSLGIPSSCTSDTE---CEVC 953 SC + C C Sbjct: 771 EVYELSFPGTGELTPESQGYSPGEEKRDSCNYTPDEIACSSC 812 >gi|255713718|ref|XP_002553141.1| KLTH0D09922p [Lachancea thermotolerans] gi|238934521|emb|CAR22703.1| KLTH0D09922p [Lachancea thermotolerans] Length = 867 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 272/796 (34%), Positives = 423/796 (53%), Gaps = 27/796 (3%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + +G S+ L +++ GL +D V + + S + Sbjct: 7 VSDRNGEANKLTSQALAQSLKQLAGGLQIEDADFDAVSRRILDAVPPSATHSSVVQFGGE 66 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + P++A + AR+ + +L +++ + + R+ Sbjct: 67 VLAAMSTTHPDFANLAARWEISELHKKLQGLSFTENLALLQKLRSSSKAPTVKRHKTSTS 126 Query: 265 KARLLHESMMDFDLV-----YLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQ 318 S +++ L ++ +RDF F Y G + L Y N E PQ Sbjct: 127 HNDKNLISAAFYEMALRYQTTLDAAIQPDRDFDFSYFGWKTLSKSYLIKRKNEETHETPQ 186 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377 FMRVA+ + +E Y+L+S F+ ++PTLFN+GT + LSSCFL + Sbjct: 187 FLFMRVALAIHGP-RGDIDAVLETYDLMSRKFFIHASPTLFNAGTVNQYLSSCFLVAMIE 245 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L + AM++K SGG+G + VRG GA+I G+NG S G++P L+V N+TA Sbjct: 246 DSIDGIYRTLHKTAMISKASGGVGVHVSNVRGTGAYISGSNGTSNGLVPMLRVFNNTARY 305 Query: 438 VNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QG KR GA C YLE WH DV +FL LRKN G + R D+ A WIPDLFM+RV QN Sbjct: 306 VDQGGNKRPGAFCIYLEPWHSDVLDFLQLRKNQGKEELRARDLFLALWIPDLFMERVEQN 365 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W LFSPDE L + +G+EF+ YE YE+ + +K+ A LW ++L ET Sbjct: 366 GSWCLFSPDEAPGLQECFGEEFKKLYETYEK-----TLAPAKKMPAQKLWSEILQSQVET 420 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615 G P++ +KD CN +S Q+++G + SSNLC EI SS ETAVCNL S+ L + + Sbjct: 421 GGPFMLYKDSCNNKSNQKNLGTIKSSNLCCEIVQYSSPSETAVCNLASVALPSFVKLQRE 480 Query: 616 ---FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 FD++ L ++ + LD+VIDI + +E AK SN +R I +G+ G AL +L I Sbjct: 481 QAIFDFESLHKIVKVLTKNLDSVIDICDYPVEDAKFSNEKNRPIAIGVQGLADALMILRI 540 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 P+ S A + + E I A+ S+E +++ G Y SF S +G F D GL + Sbjct: 541 PFHSESARVLNKQIFETIYHAAVETSIERSKKLGPYPSFDNSPVSRGEFQFDLWGLNDDN 600 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W E++++VK G+RNS + PTA+ + I G ++S +P N+Y + Sbjct: 601 YEFLF------SDWKEMREKVKQHGIRNSLLVGPMPTASTSQILGFTESFEPMTSNIYTR 654 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 +SG+FTV+N ++V++ + +W+E + + + +GSI IE IP +LK+++ T +EI Sbjct: 655 RVLSGEFTVINKYMVDDFCRLGIWNEKLKNRIIEQNGSIQGIEGIPSNLKELYRTVWEIP 714 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +I+ ++ R +IDQ+QSLNL+L EP+ KL ++ W GLKT YYLR+++A+ Sbjct: 715 QRVMIDLSADRGPFIDQSQSLNLFLREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASGA 774 Query: 912 EKSTLKGVDGKLNAVP 927 K T+ + AV Sbjct: 775 IKFTINQENTLRGAVS 790 >gi|149238952|ref|XP_001525352.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces elongisporus NRRL YB-4239] gi|146450845|gb|EDK45101.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces elongisporus NRRL YB-4239] Length = 862 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 271/781 (34%), Positives = 412/781 (52%), Gaps = 35/781 (4%) Query: 152 GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 GT + + L ++ GL + + + + D L+ + T + + Sbjct: 14 GTSHKISREGLLDLLRSLSKGLDATHLRLEEAIDAIMSGLPDTLTTKEFYTYVSETVAAR 73 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 + P+Y+ + R + L+ +V + ++ +Y R + Sbjct: 74 VIYHPDYSILAGRVEAKFLQLQVPYRFSENVERL---------KQYSPRKGKSFSPISED 124 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 ++ +K +RD+ Y G++ L + Y L I+G E PQ F+RV++G+ Sbjct: 125 FYKVVMEHKDVFDKMIKSDRDYDLTYFGIKTLENSYLLRIDGEVAETPQQMFLRVSIGIH 184 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQ 388 T E YNL+S +F+ + PTL+N+G++ LSSCFL + DD + GI+ L Sbjct: 185 ---THSVSHVEETYNLMSQKYFIHALPTLYNAGSKFNYLSSCFLMAMKDDSIDGIYKTLH 241 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGA 447 E A+++K SGG+G +R G++I TNG S G++P L+V N+TA V+QGG KR GA Sbjct: 242 ETALISKASGGVGIHVHDIRANGSYIASTNGLSNGLVPMLRVFNNTARFVDQGGGKRPGA 301 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YLE WH DV + LD+RKN G++ RT D+ WIPDLFM+RV N W+LFSPDE Sbjct: 302 FAIYLEPWHADVFDILDMRKNHGNEEHRTRDLFYGLWIPDLFMERVKTNGQWSLFSPDEA 361 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L D+YG +F+ YE YE+ E R I+A LW +L ETG P++ +KD C Sbjct: 362 PGLSDVYGDDFKELYERYEK-----EKLATRTINAQKLWLAILESQTETGGPYMLYKDAC 416 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL----LAHFANNQFDYDKLAS 623 N +S Q+++G + SSNLC EI SS ETAVCNL S+ L + +FD+ KL Sbjct: 417 NRKSNQKNLGTIKSSNLCCEIIEYSSPTETAVCNLASLALPSFLEVSEDDIKFDFLKLHE 476 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + L+ VID+ + +E AK SN HR I LG+ G L +P+ S A + Sbjct: 477 VTKVVTKNLNKVIDVTMYPVESAKNSNKKHRPIALGVQGLADLFLELRLPFDSSAAKNLN 536 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 + E + AI AS+EL+ G Y+SF+GS +G D + Sbjct: 537 IQIFETVYHAAIEASMELSIVEGPYASFQGSPASKGKLQFDLWNHKPSDLYD-------- 588 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 WD LK +V G+RNS +A PTA+ + I G ++ +P NLY + +SG+F VVN Sbjct: 589 -DWDILKSKVMKYGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVN 647 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L+ +L LW+ AM + L GS+ NI+ +P +LK ++ T +E+ +I+ A+ R Sbjct: 648 KYLIKDLIDLGLWNSAMRNKLMMDGGSVQNIDILPKELKTLYRTVWELKQKDIIDMAADR 707 Query: 864 QKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922 K+IDQ QS+N+YL P+ KL + AW MGLKT YYLR+++AT + T+ + Sbjct: 708 AKFIDQLQSMNIYLQNPTIGKLTSCHFHAWEMGLKTGMYYLRTQAATRAIQFTIDANEAN 767 Query: 923 L 923 L Sbjct: 768 L 768 >gi|254567974|ref|XP_002491097.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|238030894|emb|CAY68817.1| One of two large regulatory subunits of ribonucleotide-diphosphate reductase [Pichia pastoris GS115] gi|328352376|emb|CCA38775.1| ribonucleoside-diphosphate reductase subunit M1 [Pichia pastoris CBS 7435] Length = 774 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 259/812 (31%), Positives = 419/812 (51%), Gaps = 50/812 (6%) Query: 150 DDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ISF+ RL+ + + GL + V +V+ + + + L DL Sbjct: 3 KSKEAISFDEARLKRSLLKLSFGLNLKFVDIALVVEKVSLAIIENLHLQDLLNLTSEILA 62 Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 +L + +Y+ + AR L LR+ + + + ++ H Sbjct: 63 SLSTRHYDYSNLAARLLSNHLRKRLGDSFFANCERLAEHGFVD----------------- 105 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 ++ + L +K ERDF F+Y G L Y L + +E PQ FMRVA+G Sbjct: 106 KGLLTIARSNSEQLDGSIKPERDFDFDYFGYMTLQSIYLLKKDDLILETPQFLFMRVALG 165 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD-DLYGIFGA 386 + E A++ Y+L+S +F+ ++PTLF++GT P LSSCFL + D D+ ++ + Sbjct: 166 IHG---EDLSSAIQTYDLMSQGYFIHASPTLFHAGTPTPYLSSCFLMGLQDADVNSVYQS 222 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRK 445 L + AM++ +GG+G + + ++G++P +KV N+TA V QG KR Sbjct: 223 LHKIAMISNAAGGIGINVHDIPAED-------ACNRGIVPLIKVLNETARYVQQGSNKRP 275 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 A YLE WH +V + L+LRKN G + R D+ A WIPDLFM++V +N W LF+P Sbjct: 276 SAFAIYLEPWHEEVFDLLNLRKNHGKEEIRARDLFYALWIPDLFMEKVEKNEDWCLFNPL 335 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 L+D+YG++F + Y YE++ RKI A LW ++ ETG P++ +KD Sbjct: 336 HAKGLNDVYGEQFNLLYAEYEKKGM-----YVRKIPAQQLWNAIVDAQIETGTPFMLYKD 390 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 CN +S Q ++G + SNLC EI SS ++ AVCNL SI L + + +FD++ L +++ Sbjct: 391 SCNRKSNQSNLGTIQCSNLCCEIVEYSSRDQIAVCNLASIGLPKYVVDGKFDFESLKNSV 450 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R L+ VIDI+ + + +A SN R + +G+ G LL IPY S EA + + Sbjct: 451 RIVTENLNKVIDISKYPVPEASYSNDLTRPMAIGVQGLWDTFMLLKIPYDSEEAAALNSQ 510 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E I + A+ S+ +A++ G Y SF+GS +G+ +D + E L Sbjct: 511 IFETIYYSALETSMNIAKKDGPYKSFQGSPASKGLLQMDLWNVKEED---------LTLD 561 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L+ + G+RNS + PTA+ + I G +S +P N Y + SG++ VVN + Sbjct: 562 WKSLRSDIVKHGLRNSLLVGPMPTASTSQILGFCESFEPLSYNFYTRRVSSGEYQVVNKY 621 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L+++L LW +++ ++ +DGSI I+ IP ++K ++ T +EI I A+ R + Sbjct: 622 LIDDLINLGLWTDSLRQEIIGNDGSIQEIDEIPQEVKSLYKTVWEISQRITINMAADRGR 681 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLN 924 +IDQ+QS+NLYL +P+ KL ++ AW GLKT YYLR+++A+S K ++ K + Sbjct: 682 FIDQSQSMNLYLAKPNRGKLTAMHFYAWKKGLKTGMYYLRTKAASSAIKFSIDISKRKRD 741 Query: 925 A---VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 P + +L SC + CE C Sbjct: 742 GTYNTPTKRQAVQSEALETTPSCQLN-NCESC 772 >gi|297268642|ref|XP_002799730.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Macaca mulatta] Length = 711 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 260/665 (39%), Positives = 392/665 (58%), Gaps = 23/665 (3%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 L+ L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 63 TAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTH 119 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G+ Sbjct: 120 ASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 179 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 180 YIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 239 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q Sbjct: 240 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQ--- 296 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 297 --GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEY 354 Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN Sbjct: 355 TSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSN 414 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y + Sbjct: 415 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYET 474 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++GS +G+ D + T W+ LK+ + G+RNS +A PTA Sbjct: 475 YEGSPVSKGILQYDMWNVTP----------TDLWDWNLLKENIAKYGIRNSLLIAPMPTA 524 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GS Sbjct: 525 STAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGS 584 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 585 IQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHF 644 Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GLKT YYLR+R A + + TL + + ++ + S + Sbjct: 645 YGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKISKEEEEKERNTAAMVCSLENRD 704 Query: 949 ECEVC 953 EC +C Sbjct: 705 ECLMC 709 Score = 83.7 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNY-----AKVTAR---FLLEK---LRREVLTTVYKKPQKATHHEMQCL 251 ++ TL E +Y KV R L+ + +E + + + Sbjct: 61 AETAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHA 120 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287 P F + SM D + + + LK Sbjct: 121 SPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQ 156 >gi|50310227|ref|XP_455133.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644269|emb|CAG97840.1| KLLA0F01188p [Kluyveromyces lactis] Length = 855 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 269/799 (33%), Positives = 419/799 (52%), Gaps = 29/799 (3%) Query: 154 LISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSE-SDLETALIFSSRTLI 210 +FN +L+ ++ L + + ++ + + + +E S + + + Sbjct: 15 KETFNKDKLKKFLQTLTFSLNAEYIELDTLVEKILVGIPNEPTERSKFVSYVAETVAGST 74 Query: 211 EKEPNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 P+Y+ + AR + +L R + T + K + R I + L+ Sbjct: 75 SAHPDYSILAARVEIRELHRIIGDATFTENLAKLRKISREVTEDATKRRKITRDLSKNLI 134 Query: 270 HESMMDFDL---VYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVA 325 + + L + + RD+ F Y G + L Y + N E PQ FMRVA Sbjct: 135 SDEFYQYALKFKDKIDQAIDKSRDYNFTYFGWKTLCKSYLMKRNNEQTHETPQFMFMRVA 194 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384 + + +E + L+S +F+ ++PTL NSGT + LSSCFL + DD + GI+ Sbjct: 195 LAIHGPFD-DIDSVLETFELMSQKYFIHASPTLCNSGTVNQYLSSCFLVGMEDDSIDGIY 253 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GK 443 L + A+++K SGG+G + +R GA+I G+NG S G++P L+V N+TA V+QG K Sbjct: 254 KTLHKTALISKASGGVGIHVSNIRANGAYISGSNGTSNGLVPMLRVFNNTARYVDQGGNK 313 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA C YLE WH D+ +FL LRKN G + R D+ A WIPDLFMKRV N W++FS Sbjct: 314 RPGAFCIYLEPWHADIIDFLQLRKNHGKEEMRARDLFYALWIPDLFMKRVENNEDWSIFS 373 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 PDE L D YG EF+ YE YE+ E+ +K+ A +W ++L ETG P++ + Sbjct: 374 PDEAPGLTDCYGDEFDKLYERYEK-----ELIPRKKMKAQQIWSEILQSQTETGVPFMLY 428 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDY 618 KD CN +S Q+++GV+ SSNLC EI SS EE AVCNL S+ L + FD+ Sbjct: 429 KDACNKKSNQKNLGVIKSSNLCCEIVEYSSPEEVAVCNLASVALPTYVNLSSDGPPVFDF 488 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL ++ V+ LD ID+ + + +A+ N +R + +G+ G L P+ S + Sbjct: 489 VKLHHVVKVLVKNLDRTIDVGKYPVPEARNGNIRNRPLAIGVQGLADTFMLCRTPFESVD 548 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + + E I AI AS ELA+ G Y SF GS +G D L + L Sbjct: 549 AATLNKQIFETIYHAAIEASTELAELFGHYESFPGSPASEGQLQFDLWSLNKDNYKFLF- 607 Query: 739 NRTSRLPWDELKKRVKT-IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 WD LK R+ G+RNS + PTA+ + I G ++S +P N+Y + +SG Sbjct: 608 -----DDWDSLKSRITKGKGLRNSLLVGPMPTASTSQILGFTESFEPMTSNIYSRRVLSG 662 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +FT++N ++V++ Q +W+E + + + +GSI IE IP+++K ++ T +E +I Sbjct: 663 EFTIINQYMVDDFCQLGIWNEKLKNRILRDNGSIQTIEGIPEEVKNLYKTVWETSQRKMI 722 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTL 916 + +S R +IDQ+QSLNLYL EP+ KL ++ W GLKT YYLR+++A+ + TL Sbjct: 723 DLSSDRAPFIDQSQSLNLYLREPTMGKLTAMHFYTWKKGLKTGMYYLRTQAASRAIQFTL 782 Query: 917 KGVDGKLNAVPVTDPNSST 935 + L+ V +S Sbjct: 783 NDENTLLDKVTTKVKDSRP 801 >gi|19074701|ref|NP_586207.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi GB-M1] gi|51701818|sp|Q8SR37|RIR1_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase large chain; AltName: Full=Ribonucleotide reductase gi|19069343|emb|CAD25811.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi GB-M1] Length = 768 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 248/787 (31%), Positives = 418/787 (53%), Gaps = 40/787 (5%) Query: 153 TLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 + +E L+ V ++ + ++ + ++ ++I Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 K P Y ++++R ++ + + + +K + Y + + E + +L Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIK----------YIQKHRGMVSEEMYGIIL- 119 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 + + YE DF F Y G+ L Y + + IE PQ FMRVA+ + Sbjct: 120 -----EHGETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIH- 173 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQE 389 ++ E YNLLS +F +TPTL+NS ++PQL+SCFL T D + G++ + + Sbjct: 174 --KTDFEKVREVYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQ 231 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAV 448 A++ KYSGG+G + +R G+ + T G+S G+IP ++V N T +NQG +R+ G++ Sbjct: 232 AAIITKYSGGIGLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSI 291 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 +LE WH+++ +FL+LRKNTG + R D+ TA WI DLFM+RV N W+LF P + Sbjct: 292 AIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAV 351 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L D++G+EF Y YE+ R + A LW+ ++ ETG P++ +KD CN Sbjct: 352 GLSDVWGEEFNALYCKYEKTISRT------VVPAQKLWKAIIEAQIETGTPYMCYKDACN 405 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 S QQH+G + SSNLC EI SS EET+VCNL SI L + FD++ ++ Sbjct: 406 RLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKIL 465 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L+ VID N + +E+A++SN +R IG+G+ G +L + + S A + + E Sbjct: 466 TVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFE 525 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + + A+ AS ELA++ G + S++GS +G+F + G A + W+ Sbjct: 526 AMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKA----------SGNWDWEG 575 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++R++ G+RNS +A+ PTA + I G +++ +P N+Y + +G+F +VN LVN Sbjct: 576 LRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVN 635 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L + LW M + + ++GSI NI IP ++++I+ TA+EI +I+ A+ RQ ++D Sbjct: 636 DLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVD 695 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927 Q+QSLN+++ +P+ +L ++ + GLKT YYLR+R TS K T+ + Sbjct: 696 QSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755 Query: 928 VTDPNSS 934 + D + Sbjct: 756 MNDTDDP 762 >gi|20070048|ref|NP_613252.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata NPV-A] gi|20043442|gb|AAM09277.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata NPV-A] gi|33331880|gb|AAQ11188.1| putative ribonucletide reductase large subunit-like protein [Mamestra configurata NPV-A] Length = 761 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 261/820 (31%), Positives = 426/820 (51%), Gaps = 70/820 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG L + +L + C L V + V + K++ D + D++ Sbjct: 1 MYVVKRDGRLEQVSPSKLHNRIHRLCHDLNSQFVHPRAVSLKVIKSLSDHTTTEDIDIYA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + TL K +Y + R L+ + + V + K Q+ H + E I+ Sbjct: 61 ASVAATLTYKHYDYDMLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS--DELLLVTIKH 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + ++ + D + Y G Q L + Y + IN E Q M Sbjct: 119 S---------------KIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 R+A+G+ + + A++ Y LS+ + ++PT+F +GT PQ+SSCFL T+ D + Sbjct: 164 RIALGIFGDDIDN---AIKSYKFLSTKMYTHASPTMFAAGTPTPQMSSCFLLTMESDSIR 220 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L + AM++K+ GG+G + VRG + I TNG + G++P L+V N+ VNQG Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVNQG 280 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA Y+E WH D+ + L +R+N G + + D+ A W+PD+FM+RV +N W+L Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMRRVQENGRWSL 340 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E +L++ +G EFE Y++YE + + ++ AV L R ++ + ETG P++ Sbjct: 341 MCPNECPELNNTFGDEFEYWYKHYE-----DKGQFRDQMPAVTLMRTIIEIQAETGTPYM 395 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD CN +S Q + G++ SNLC EI + +ETAVCNL SI + + N FD+ L Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIINGTFDFQLL 455 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 S ++ V L+ +ID N + +E AKKSN HR IG+G+ G A +L IPY S AV Sbjct: 456 HSVVKHVVISLNKIIDRNFYPVEAAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E + A+ AS++LA + YS+F GS QG+ D + T Sbjct: 516 LNKQISETVYHAALDASLKLASDSEPYSTFAGSKASQGILQYDLWNAIP----------T 565 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S W +LK ++ G+RNS +A PTAT A I ++S +P + NL+++ +SG+F V Sbjct: 566 SLWDWSQLKMNIQKHGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL----- 856 VN +LV++L +L+ +M + + GSI +I+ IPD++KK++ T +E W Sbjct: 626 VNRYLVDDLIALNLYTSSMRKRIMANRGSIASIDEIPDNIKKLYMTIWE---CWHNNGKF 682 Query: 857 -IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 I+ A+ R +IDQ+QS N+Y+ +P+ K+ ++ W GLKT YY R+ A + ++ Sbjct: 683 MIDMAADRGAFIDQSQSFNVYMADPTLAKMASVHMYGWQRGLKTGMYYFRTLPAANSQQF 742 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 T+ CT +++C CQ Sbjct: 743 TVAPNLE----------------------CTKNSDCASCQ 760 >gi|215401394|ref|YP_002332698.1| ribonucleotide reductase large subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] gi|198448894|gb|ACH88684.1| ribonucleotide reductase large subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] Length = 761 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 264/817 (32%), Positives = 424/817 (51%), Gaps = 64/817 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG L +S +L + C L V + V + K + D + D++ Sbjct: 1 MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + L K +Y + R L+ + + V + K Q+ H + E I+ Sbjct: 61 ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS--DELLSVTIKH 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + ++ + D + Y G Q L + Y + IN E Q M Sbjct: 119 S---------------KIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 R+A+G+ + A++ Y LS + ++PT+F +GT PQ+SSCFL T+ D + Sbjct: 164 RIALGIFGDD---IDSAIKSYKFLSRKMYTHASPTMFAAGTLTPQMSSCFLLTMESDSIR 220 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L + A+++K+ GG+G + VRG + I TNG + G++P L+V N+ V+QG Sbjct: 221 GIYNTLNDCAIISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA Y+E WH D+ + L +R+N G + + D+ A W+PD+FMKRV +N W+L Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L+D YG +FE Y++YE + E ++ AV L R ++ + ETG P++ Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRNIIEIQAETGTPYM 395 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD CN +S Q + G++ SNLC EI + +ETAVCNL SI + + N+ FD+ L Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + ++ V L+ +ID N + IE AKKSN HR IG+G+ G A +L IPY S AV Sbjct: 456 HTVVKHVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E + A+ AS ELA YS+F GS +G+ D + T Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S W +LK ++ G+RNS +A PTAT A I ++S +P + NL+++ +SG+F V Sbjct: 566 SLWDWSQLKMNIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858 VN +LV++L + +L+ +M + + GSI +I +IPD+LKK++ T +EI + ++IE Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+Y+ P+ K+ ++ W GLKT YY R+ A + ++ T+ Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTVS 745 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 CT +++C CQ Sbjct: 746 PNLE----------------------CTKNSDCASCQ 760 >gi|118197505|ref|YP_874319.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV] gi|37039662|gb|AAQ88175.1| ribonucleotide reductase large subunit [Ecotropis obliqua NPV] Length = 760 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 251/794 (31%), Positives = 409/794 (51%), Gaps = 43/794 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETA 201 + D F+ K++ ++ L + + ++++ K + +S S L Sbjct: 1 MFSVTKRDNAKQCFDQKKIVKTLQNLSVDLNKNLIDCEALVAQLKKTLVSNVSTSQLCVL 60 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM--QCLYPEYFCRY 259 L S ++ YA + R ++ ++V + + Y Sbjct: 61 LARESASMAYIHDEYAMLAGRLMVIDNHKQVSDDYAVVVDNLYNQNLVSAQFYKSAIA-- 118 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 ++ + L Y D+ ++Y G + L + Y I G E Q Sbjct: 119 -----------------NMHTINATLNYNLDYDYKYFGFKTLENGYLKTIEGKVAERIQH 161 Query: 320 FFMRVAMGLALKETEKEKR-AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377 +MRVA+ + +T+ E YNL++ + ++PTLF SG+ + QL+SCFL + Sbjct: 162 MYMRVALTIHGNDTDDCIENVFETYNLMAHKMYTHASPTLFASGSCYAQLASCFLLNIKE 221 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L++ A+++K+ GG+G VR G+ I TNG + G+ L+V N+ Sbjct: 222 DSIVGIYETLRDCALISKFGGGIGLSVHNVRARGSFIESTNGTANGLEAMLRVYNNAVRH 281 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+QGGKRKGA+ Y+E WH D+ +FL+L++N G + R+ D+ A W+PDLFMKRV + Sbjct: 282 VDQGGKRKGAMAIYVEPWHADIYDFLELKRNMGAEDRKARDLLYALWVPDLFMKRVEADG 341 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+L P E L ++G EFE Y YE+ K R+I A L+R ++ ETG Sbjct: 342 MWSLMCPRESPLLDTVHGSEFEQLYVAYEKC-----GKFVRQIKARDLFRTIVETQVETG 396 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--Q 615 P++ +KD CN++S Q+H+G + +SNLC EI S E+AVCNL SI + + + Sbjct: 397 TPYMMYKDACNMKSNQKHLGTIKNSNLCAEIVEYSDKNESAVCNLASICVNQFVDIDVGE 456 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 ++++ L + V+ L+ +IDIN + + A+KSN HR IG+G+ G +L +PY Sbjct: 457 YNFEMLKYVTKIVVKNLNKIIDINYYPLLSAQKSNRKHRPIGVGIQGLADTFAMLRMPYE 516 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S +A + + E I F A+ AS ELA+ G + S+ S G+ D Sbjct: 517 SDQAKVLNTKIAETIYFGALEASCELAKAYGVHDSYFSSPASLGILQYDLWNHTP----- 571 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 TS W +LKK +K G+RNS C+A PTAT A I G ++S +P N+YV+ + Sbjct: 572 -----TSMWDWTQLKKDIKQHGLRNSLCVAYMPTATTAQILGNNESFEPFTNNIYVRRVL 626 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 +GDF V+N +L ++L + +L++E M + + ++GS+ NIE IP +++++ T +E+ Sbjct: 627 AGDFQVINKYLTDDLIKLNLYNEQMRNKIIANNGSVQNIEEIPKHVRELYKTVWEMKVKN 686 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 LI A+ R +IDQ+QS N++L +P+ L I+ W GLKT YYLR++ A K Sbjct: 687 LIGMAADRGPFIDQSQSFNIFLSQPTYALLTTIHMHTWKSGLKTGMYYLRTKPAADAIKF 746 Query: 915 TLKGVDGKLNAVPV 928 T+ NA Sbjct: 747 TVDKSQIVCNACSS 760 >gi|22549569|ref|NP_689342.1| putative ribonucletide reductase large subunit-like protein [Mamestra configurata NPV-B] gi|22476748|gb|AAM95154.1| putative ribonucletide reductase large subunit-like protein [Mamestra configurata NPV-B] Length = 761 Score = 592 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 264/817 (32%), Positives = 424/817 (51%), Gaps = 64/817 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG L +S +L + C L V + V + K + D + D++ Sbjct: 1 MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHPRAVSLKVIKGLSDNTTTEDIDIYA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + L K +Y + R L+ + + V + K Q+ H + E I+ Sbjct: 61 ASVAAALTYKHYDYDTLAGRLLVTNMHKYVDESFTKVVQRLHKHNLVS--DELLSVTIKH 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + ++ + D + Y G Q L + Y + IN E Q M Sbjct: 119 S---------------KIIEENIDMKLDLDYNYFGYQTLKNGYLIKINEKVAERIQHMHM 163 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 R+A+G+ + A++ Y LS + ++PT+F +G+ PQ+SSCFL T+ D + Sbjct: 164 RIALGIFGDD---IDSAIKSYKFLSRKMYTHASPTMFAAGSLTPQMSSCFLLTMESDSIR 220 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L + AM++K+ GG+G + VRG + I TNG + G++P L+V N+ V+QG Sbjct: 221 GIYNTLNDCAMISKHGGGIGLNVNSVRGRNSKIKSTNGTASGLLPMLRVFNNMVRHVDQG 280 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 GKRKGA Y+E WH D+ + L +R+N G + + D+ A W+PD+FMKRV +N W+L Sbjct: 281 GKRKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSL 340 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P+E L+D YG +FE Y++YE + E ++ AV L R ++ + ETG P++ Sbjct: 341 MCPNECPKLNDTYGDDFEYWYKHYEDKGQFRE-----QMPAVTLMRNIIEIQAETGTPYM 395 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 +KD CN +S Q + G++ SNLC EI + +ETAVCNL SI + + N+ FD+ L Sbjct: 396 LYKDACNRKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYINNDTFDFQLL 455 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + ++ V L+ +ID N + IE AKKSN HR IG+G+ G A +L IPY S AV Sbjct: 456 HTVVKHVVDSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVL 515 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E + A+ AS ELA YS+F GS +G+ D + T Sbjct: 516 LNKQIAETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVP----------T 565 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S W +LK ++ G+RNS +A PTAT A I ++S +P + NL+++ +SG+F V Sbjct: 566 SLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQV 625 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DPMWLIE 858 VN +LV++L + +L+ +M + + GSI +I +IPD+LKK++ T +EI + ++IE Sbjct: 626 VNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIE 685 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R +IDQ+QS N+Y+ P+ K+ ++ W GLKT YY R+ A + ++ T+ Sbjct: 686 MAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTVS 745 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 CT +++C CQ Sbjct: 746 PNLE----------------------CTKNSDCASCQ 760 >gi|86261680|emb|CAC17629.2| class I ribonucleotide-diphosphate reductase large subunit chain [Streptomyces jumonjinensis] Length = 811 Score = 592 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 301/802 (37%), Positives = 434/802 (54%), Gaps = 44/802 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + + L D V + + + G ++L ++ LI ++P Y+++ A Sbjct: 45 LLRTLTDLTADLPDTDPGRVAAAALRGRHAGSDAAELRGLATDAAAGLISEDPAYSRLAA 104 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L + E F + G L+ + F Sbjct: 105 RLLTRTIADEAEGQGAVS----------------FSASVAVGFAEGLIADRTAAFVTLHA 148 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + D F Y GL+ LY RY L IE PQ F +RVA GLA ++ + Sbjct: 149 ARLDALIDPAADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSTRA 208 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+ Sbjct: 209 LDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLS 268 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ VR G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 269 KHAGGIGLSYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 328 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+ Sbjct: 329 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFSPSDVPELVDLW 388 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G +F+ AY E + + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 389 GDDFDTAYRRAEAAGLA-----RKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 443 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VHSSNLCTEI + ETAVCNLGS+NL A + D+++L +T+RTAV L Sbjct: 444 ALPGRTVHSSNLCTEILEVTDDAETAVCNLGSVNLAAFVTQDDIDWERLDATVRTAVTFL 503 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D V+DIN + E+A +SN+ R +GLG MG Q L +P+ SP A ++ E I Sbjct: 504 DRVVDINFYPTEQAGRSNNRWRPVGLGAMGLQDVFFQLKLPFDSPAARTLSTRIAERIML 563 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS +LA+ G ++ + GV D D W+ L++R Sbjct: 564 AAYEASADLAERHGPLPAWNETRTAHGVLHPDHYNTTPHWPDR----------WNALRER 613 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LV ELK Sbjct: 614 IAATGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVQELKN 673 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +WD L+ +GSI N ++P D+++++ TA+EI LI+ A+ R ++DQ+QS Sbjct: 674 LGVWDATTREALRDANGSIQNFTQVPADVRELYRTAWEIPQRGLIDMAAARTPYLDQSQS 733 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 LNL+L+ P+ KL +Y AW G+KTTYYLRSR AT + ++ G VP Sbjct: 734 LNLFLETPTIGKLSSMYAYAWKQGIKTTYYLRSRPATRIARAASNTNAGATVPVPA---- 789 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 +T + S + CE CQ Sbjct: 790 QTTPEDAVACSLENPESCEACQ 811 >gi|239982207|ref|ZP_04704731.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces albus J1074] gi|291454053|ref|ZP_06593443.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces albus J1074] gi|291357002|gb|EFE83904.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces albus J1074] Length = 791 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 298/826 (36%), Positives = 440/826 (53%), Gaps = 51/826 (6%) Query: 145 LKIMMDDGTLISFNSKRLE-------MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197 + I D + ++ ++ + + + L D V + + E++ Sbjct: 1 MTIAPADPSTADVRAEEIQGPGGALLRTLTDLTADLPDTDPGRVAAAALRGRNAASDEAE 60 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L + ++ LI ++P Y+++ AR L + E F Sbjct: 61 LRSLATEAAAGLISEDPAYSRLAARLLTRTIAEEAAGQGVTT----------------FT 104 Query: 258 RYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR- 313 + G + L+ + F L + D F Y GL+ ++ RY L +R Sbjct: 105 ESVATGHREGLIADRTAAFVTAHAERLDALVDPAADDRFGYFGLRTVHSRYLLRHPHTRQ 164 Query: 314 -IEMPQAFFMRVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 IE PQ F +RVA GLA ++ + Y L+S+ ++ S+PTLFNSGTRHPQ+SSC Sbjct: 165 VIETPQHFMLRVACGLAEDDSARALDEVASLYRLMSALSYLPSSPTLFNSGTRHPQMSSC 224 Query: 372 FLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 +L P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PFL Sbjct: 225 YLLDSPKDELESIYDRYHQVARLSKHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLNT 284 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + + AVNQGG+RKGA YLETWH DVEEFL+LR NTG++ RRTH++N A+WIPD FM Sbjct: 285 LDASVAAVNQGGRRKGAAAVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFM 344 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV +A W+LFSP +V +L DL+G F+ AY E + R I A L+ +M+ Sbjct: 345 RRVDADADWSLFSPSDVPELTDLWGDAFDAAYRAAEARGLA-----RRTIPARELYGRMM 399 Query: 551 TMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 L +TG+ W+TFKD N + Q VHSSNLCTEI + ETAVCNLGS+NL Sbjct: 400 RTLAQTGNGWMTFKDASNRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLG 459 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 A D+++L +RTAV LD V+DIN + E+A++SN R +GLG MG Q Sbjct: 460 AFVDGGAIDWERLDEAVRTAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFF 519 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +P+ SPEA ++ E I A S +LA++ G ++ + QGV D Sbjct: 520 QLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPDHY-- 577 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + W+ L+ RV GMRN+ +AIAPTATIA+I GV + I+P N Sbjct: 578 --------DTDLAWPERWEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSN 629 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L+ + +SG+F VNS+LV +LK+ +WD L+ GS+ IP++L+ ++ TA Sbjct: 630 LFKRETLSGEFLQVNSYLVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTA 689 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 +E+ LI+ A+ R ++DQ+QSLNL+++ P+ KL +Y AW GLKTTYYLRSR A Sbjct: 690 WELPQRGLIDMAAARTPFLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKTTYYLRSRPA 749 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 T + + G A ++ + I S + CE CQ Sbjct: 750 TRI----ARAAGGSAPATATVPAQAAPDAEAIACSLENPESCEACQ 791 >gi|260945435|ref|XP_002617015.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720] gi|238848869|gb|EEQ38333.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720] Length = 878 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 279/804 (34%), Positives = 425/804 (52%), Gaps = 34/804 (4%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK-IVLSETYKN-MYDGLSESDLETALIF 204 + +G+ F RL ++E L SS+ + + +N + L+ + L + Sbjct: 5 VYEINGSN-PFQIGRLRKTLDELNRELDISSSELELSMKAIENSLPASLTVNQLLELVAE 63 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + + + P++A + R +++R V++ + + + + + Sbjct: 64 TLAQRVVQNPDFALLAGRVEAYRVQRLVVSPFSTNFSRLENGSKTESKIKMDLGLVSKD- 122 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + + YL ++ ERD F Y G++ L YFL I+ E PQ F+RV Sbjct: 123 -----AAEFVARNSDYLDKLVRPERDMNFTYFGMRTLCKSYFLQIDNVVAETPQYLFLRV 177 Query: 325 AMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 A+GL K + +R E Y+L+S + + S+PTLF++GT + LSSCFL + D + Sbjct: 178 AIGLHGKLDDKNALQRVSEIYDLMSEKYLIFSSPTLFSAGTNNNFLSSCFLMGIKEDSID 237 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L A+++K SGGLG +R G+ I +NG S G++P LKV N+TA V+QG Sbjct: 238 GIFKTLHSAALISKGSGGLGIHVHNIRSNGSAISSSNGTSNGLVPMLKVFNNTARYVDQG 297 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA Y+E WH D+ E L+LRKN G D R D+ A WIPDLFMKRV N W+ Sbjct: 298 GNKRPGAFAIYIEPWHGDIMEVLELRKNHGPDELRARDLFFALWIPDLFMKRVKNNGKWS 357 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP + L D+YG+EFE Y+ YE + I A LW +L ETG P+ Sbjct: 358 LFSPSKAPGLSDVYGEEFESLYQKYEEEDLA-----CTTIEARKLWMHILQAQTETGMPF 412 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----- 615 + +KD CN +S Q ++G + SSNLC EI SS EETAVCNL S+ L N+ Sbjct: 413 MLYKDACNRKSNQMNLGTIKSSNLCCEIVEYSSPEETAVCNLASLGLPTFVTANENGNVA 472 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ KL + R LD VID+ + I+ AK SN HR I +G+ G L +P+ Sbjct: 473 FDFKKLHKVTKILARSLDRVIDVTKYPIKSAKVSNLKHRPIAIGVQGLADTFLELRLPFD 532 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EA + + E I AI +S+EL++E+G Y SF+GS +G D + D Sbjct: 533 SAEAATLNSQIFETIYHAAIESSMELSKEKGYYESFEGSPASKGKLQFDLWNYKPDFFD- 591 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WDELK++VK G+RNS +A PTA+ + I G ++ +P N+Y + + Sbjct: 592 ---------DWDELKEQVKKYGLRNSLLVAAMPTASTSQILGFNECFEPFTSNIYNRRVL 642 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VVN +LV +L+ +W++A+ + ++GS+ NI+ IP LKK++ T +EI Sbjct: 643 SGEFQVVNKYLVKDLRALGIWNKAVKDMIIMNNGSVQNIDIIPQKLKKLYKTVWEISQKH 702 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKS 914 ++ A+ R ++IDQ+QS+N++L P+ L + AW GLKT YYLR+++A + Sbjct: 703 IVRLAAERGRFIDQSQSMNIHLMNPTFGTLTSCHFFAWEQGLKTGMYYLRTQAAARAIQF 762 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSL 938 T+ + + + P ST Sbjct: 763 TVDKQEIEAKLKSMVVPEVSTLPK 786 >gi|302542645|ref|ZP_07294987.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces hygroscopicus ATCC 53653] gi|302460263|gb|EFL23356.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces himastatinicus ATCC 53653] Length = 804 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 302/802 (37%), Positives = 441/802 (54%), Gaps = 32/802 (3%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L V + + + G E++L + ++ LI +EP Y+K+ A Sbjct: 26 LLRTLTGLTADLPATDPGKVAAAALRGRHPGSDEAELRSLATEAAAGLIGEEPEYSKLAA 85 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E + + + E A + D + Sbjct: 86 RLLTRAIADEAAGQGAD----SFSASVAVGHREGLIA----DSTAEFVTAHTARLDA-LV 136 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EKR 338 L D F Y GL+ L+ RY L IE PQ F +RVA GLA +E+ Sbjct: 137 DRALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALDD 196 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 E Y + S+ ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++ Sbjct: 197 VAELYRMTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHA 256 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ +R G+ I GTNG S G++PFL+ + + AVNQGG+RKGA C YLETWH Sbjct: 257 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHA 316 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV + W+LFSP + +L DL+G+E Sbjct: 317 DIEEFLELRDNTGEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFSPVDAPELVDLWGEE 376 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-- 575 F+ AY E E + +++ A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 377 FDAAYRKAEA-----EGRALKQVPARQLYSRMMRTLAQTGNGWMTFKDAANRTANQTAEA 431 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDN 634 VVHSSNLCTEI + ETAVCNLGS+NL + + D+++L T+RTAV LD Sbjct: 432 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLSAHLGEDGEMDWERLDRTVRTAVTFLDR 491 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+DIN + E+A SN R +GLGLMG Q L +P+ SPEA ++ E I A Sbjct: 492 VVDINFYPTEEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQALSTRISERIMLAA 551 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 AS +LA+ G + ++ + +GV D W+ L+ R+ Sbjct: 552 YEASCDLAERHGPHPAWAETRTARGVLHPDH---------YTGAQAAWPERWEALRTRMA 602 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 T GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LVN+LK+ Sbjct: 603 TTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNNYLVNDLKKLG 662 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +WD L+ +GS+ ++ +P D++ ++ TA+EI LI+ A+ R ++DQ+QSLN Sbjct: 663 VWDTQTRDALREANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAAARTPYLDQSQSLN 722 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 L++ P+ KL +Y AW G+KTTYYLRSR AT + +S G VP P Sbjct: 723 LFMAAPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGAATATTPVPAPVPAQQ 782 Query: 935 THSLGIPSSCT--SDTECEVCQ 954 T +C+ + CE CQ Sbjct: 783 TPDEADAVACSLENPESCEACQ 804 >gi|296217190|ref|XP_002754897.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform 3 [Callithrix jacchus] Length = 711 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 261/665 (39%), Positives = 390/665 (58%), Gaps = 23/665 (3%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 L+ L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 63 TAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTH 119 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G+ Sbjct: 120 ASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 179 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 180 YIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 239 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE+Q Sbjct: 240 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYEKQR-- 297 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 298 ---RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEY 354 Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN Sbjct: 355 TSKDEVAVCNLASLALNMYVTSEHTYDFQKLAEVTKVIVRNLNKIIDINYYPVPEACLSN 414 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E G Y + Sbjct: 415 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEHGPYET 474 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++GS +G+ D + T W LK+++ G+RNS +A PTA Sbjct: 475 YEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIAPMPTA 524 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GS Sbjct: 525 STAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGS 584 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I +I IPDDLK+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 585 IQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHF 644 Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GLKT YYLR+R A + + TL V + ++ + S + Sbjct: 645 YGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMMCSLENRD 704 Query: 949 ECEVC 953 EC +C Sbjct: 705 ECLMC 709 Score = 83.4 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNY-----AKVTAR---FLLEK---LRREVLTTVYKKPQKATHHEMQCL 251 ++ TL E +Y KV R L+ + +E + + + Sbjct: 61 AETAATLKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHA 120 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287 P F + SM D + + + LK Sbjct: 121 SPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQ 156 >gi|303391084|ref|XP_003073772.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis ATCC 50506] gi|303302920|gb|ADM12412.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis ATCC 50506] Length = 768 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 254/806 (31%), Positives = 426/806 (52%), Gaps = 55/806 (6%) Query: 153 TLISFNSKRLEMIVEEACS--GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 + +EE + LQ V+ ++ + + ++ ++ ++ ++I Sbjct: 11 KSEKLKIDMVRGQIEEYTNLLKLQHVNVDELMEKIASGWCEDMTRKEIVDYCSETAASMI 70 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 K P Y +++R ++ + + + +K + Y + + I E + ++ Sbjct: 71 TKHPEYGWISSRIIVSYIHDITMDSFVEKIK----------YIQKYQGTISEEMYKIIV- 119 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 + + + + YE+DF F Y G+ L Y + + +E PQ FMR A+ + Sbjct: 120 -----ENAEIIDSIIDYEKDFLFNYFGILTLMKSYLIKVGEEIVERPQDVFMRTALQVH- 173 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQE 389 + E Y +LS +F +TPTL+NS + QL+SCFL T D + G++ + + Sbjct: 174 --KSDFGKVKETYEMLSRHYFTHATPTLYNSCLKEAQLASCFLITPREDSIEGVYHMINQ 231 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK-GAV 448 A++ KYSGG+G + +R G+ + T GKS G+IP ++V N T +NQG +R+ G++ Sbjct: 232 TAIITKYSGGIGLNLHGIRSKGSPLKRTGGKSNGIIPLIQVLNATKRYINQGAERRPGSI 291 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YLE WH+++ +FLDLRKNTG + R D+ A WI DLFM+RV N W+LF P + Sbjct: 292 AIYLEPWHMEIFDFLDLRKNTGPEEFRARDIFIALWINDLFMERVKNNEEWSLFCPSQAV 351 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 L++ +G+EF Y YE+ R + A LW+ ++ ETG P++ +KD CN Sbjct: 352 GLNETWGEEFNALYCKYEKTISRT------VVPAQKLWKAIIEAQIETGTPYMCYKDACN 405 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 S QQH+G + SSNLC EI SS EET+VCNLGSI+L N +FD++ L +R Sbjct: 406 RLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLGSISLPMFVKNKKFDFESLKDVVRIL 465 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L+ VID N + +E++K+SN HR IG+G+ G +L +P+ S EA + + E Sbjct: 466 TINLNKVIDFNYYPVEESKRSNMKHRPIGIGVQGLADLFAILRLPFDSDEARNLNKDIFE 525 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + + A+ S +LA++ G + S++GS +G+F + G A ++ W+ Sbjct: 526 TMYYSALETSCKLAEKEGPFESYEGSPISKGIFHFELAGKKA----------SNNWDWEG 575 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L++R+K G RNS +A+ PTA + I G +++ +P N+Y + +G+F +VN L+N Sbjct: 576 LRERIKKYGTRNSLLIALMPTAGTSQIFGNNETFEPFISNIYTRRTHAGEFQIVNKHLIN 635 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +L + LW M + + ++GSI NI IP ++ I+ TA+EI +I+ A+ RQ ++D Sbjct: 636 DLSELGLWSYEMKNLIIENEGSIQNITTIPKKIRDIYKTAWEIKMKAVIDLAADRQVFVD 695 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVP 927 Q+QSLN+++ +P+ +L ++ + GLKT YYLR+R TS K T+ + Sbjct: 696 QSQSLNVFVAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVC 953 + D D C +C Sbjct: 756 MNDT---------------DEPCSMC 766 >gi|297192179|ref|ZP_06909577.1| class Ia ribonucleotide-diphosphate reductase large subunit protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151244|gb|EDY64084.2| class Ia ribonucleotide-diphosphate reductase large subunit protein [Streptomyces pristinaespiralis ATCC 25486] Length = 800 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 302/802 (37%), Positives = 438/802 (54%), Gaps = 49/802 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + + L D V + + G ++L + ++ LI ++P Y+++ A Sbjct: 39 LLRTLTDLTADLPDTDPGKVAAAALRGRNAGSDAAELHSLATEAAAGLISEDPAYSRLAA 98 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L + E F + G + L+ + F Sbjct: 99 RLLTRTIAEEAAGQGASS----------------FTASVATGHREGLIADRTAAFVALHA 142 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + D F Y GL+ LY RY L IE PQ F +RVA GLA ++ + Sbjct: 143 ARLDALIDLGADDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFMLRVACGLAEDDSPRA 202 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 + Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+G + A L+ Sbjct: 203 LEEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYGRYHQVARLS 262 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 263 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 322 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V +L DL+ Sbjct: 323 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPVDVPELVDLW 382 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G++F+ AY E R +SA L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 383 GEDFDAAYRRAEAAGLA-----RRTVSARDLYGRMMRTLAQTGNGWMTFKDASNRTANQT 437 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VVHSSNLCTEI + ETAVCNLGS+NL A + + D+++L +T+RTAV L Sbjct: 438 AEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGDGIDWERLDATVRTAVTFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D V+DIN + E+A +SN R +GLG MG Q L +P+ S EA ++ E I Sbjct: 498 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAEARALSTRIAERIML 557 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS +LA+ G ++ + +GV D W+ L+ R Sbjct: 558 AAYEASCDLAERNGPLPAWAETRTARGVLHPDHYDTT----------LNWPERWEALRAR 607 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V +GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++LK+ Sbjct: 608 VAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKR 667 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +WD L+ GS+ +P++++ ++ TA+EI LI+ A+ R ++DQ+QS Sbjct: 668 LGVWDAQTREALREASGSVQGFTWVPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQSQS 727 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 LNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + + + V P Sbjct: 728 LNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI---------ARAASAAVPVPA 778 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 T + S + CE CQ Sbjct: 779 QVTPEDAVACSLENPESCEACQ 800 >gi|300707604|ref|XP_002996003.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01] gi|239605258|gb|EEQ82332.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01] Length = 800 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 248/797 (31%), Positives = 412/797 (51%), Gaps = 45/797 (5%) Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219 + + + + S + + + + D ++ + + ++ ++ K +Y + Sbjct: 44 NKFKKYISDLDSRFIAIDEYFL--KIESGLCDDITVEEFISFAAETADSMTTKHYDYGRF 101 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 +A+ L+E L+ L + + K ++ Y E F + + + Sbjct: 102 SAKILMEYLKENTLDSFFAKVD--YIYKNGDFYSEKFYNIVLD--------------NKK 145 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 +L + Y +D ++ Y + L Y L ++G IE PQ +RVA+ L E Sbjct: 146 FLDELVDYSKDDSWTYFAILTLKRAYLLTLDGQTIERPQDMLLRVAVQLHGDNLENV--- 202 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSG 398 E Y LLS+ + +PT+FNSG++ QL+SCFL T + + + G+F ++ ++K G Sbjct: 203 KETYELLSNNMYTHGSPTIFNSGSKKSQLASCFLLTPIEETVEGLFETVKRCVQISKSGG 262 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ-GGKRKGAVCAYLETWHI 457 G+ D + G I T G S+G+IP+++V N + + Q G +R G YLE WH Sbjct: 263 GVALDLHDMAAKGTSIRKTGGISKGIIPYIQVLNWSLKYIGQAGSRRSGCPAIYLEPWHK 322 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ +FLDLRK+ G D R D+ T WI DLFMKRV N W+LF P V L + YGKE Sbjct: 323 DIFDFLDLRKSIGKDELRARDVFTGMWINDLFMKRVEANEDWSLFCPKSVPGLSNAYGKE 382 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 FE Y YE++ D + A +W+ ++ ETG P++ +KD N S Q+++G Sbjct: 383 FEDMYLEYEKKVDCV------VVPAQKVWKAIIESQIETGTPYMLYKDTINNLSNQKNIG 436 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + SNLCTEI +S +E AVCNL SI L N +FD++ S ++ + + VID Sbjct: 437 TIRCSNLCTEIVQYTSPDEVAVCNLASICLPKFVINGEFDFNLFKSVVKIVTKNANIVID 496 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 N + +++A+KSN HR IGLG+ G +L +PY S A ++ E E + F A+ + Sbjct: 497 CNFYPLKEAEKSNKKHRPIGLGVQGLADVFLMLRLPYESEGARKLNKEIFETLYFGALES 556 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S E A++ G Y S+ GS +G+F + + T R W+EL+K++ G Sbjct: 557 SCEEAEKYGPYESYNGSPISKGIFHWEMAN----------SSTTGRWNWEELRKKILKYG 606 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNS +A PTA + I +++ +P N+Y + G+F +VN +L+N+L + ++W Sbjct: 607 VRNSLLIAPMPTAGTSQIFNNNEAFEPFTSNIYTRRTACGEFQMVNRYLMNDLIKLNMWS 666 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + + +GSI NI IP+++K+++ T +EI +I+ A+ RQ ++DQ QSLNL++ Sbjct: 667 PEIKNYIVEQEGSIQNISGIPEEIKELYKTVWEIKMKCVIDLAADRQAFVDQTQSLNLFV 726 Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 +P+ L ++ W GLKT YYLR+R TS K T+ L+ + + N +T+ Sbjct: 727 AKPTYPILSSMHFYGWKRGLKTGMYYLRTRPITSAIKFTVD-----LDMLKKVEKNEATN 781 Query: 937 SLGIPSSCTSDTECEVC 953 + CE C Sbjct: 782 EELKENEINKSDICESC 798 >gi|294631327|ref|ZP_06709887.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. e14] gi|292834660|gb|EFF93009.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. e14] Length = 798 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 302/832 (36%), Positives = 440/832 (52%), Gaps = 46/832 (5%) Query: 132 QSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD 191 + + A ++ T L + E + L D V + + Sbjct: 4 EGEPQVTIAPADPASVVDRLETDGP--GAALLRTLTELTADLPDADPGRVAAAALRGRSA 61 Query: 192 GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 E++L +S LI ++P Y+++ AR L +R E + + Sbjct: 62 RADEAELRELATEASAGLISEDPAYSRLAARLLTLTIRAEAASQGVTR------------ 109 Query: 252 YPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 F + G + L+ + +F L + D F Y GL+ L+ RY L Sbjct: 110 ----FTESVAVGHREGLIADRTAEFVRLHAERLDAAVDPAADDRFGYFGLRTLHSRYLLR 165 Query: 309 I--NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 IE PQ F +RVA GLA Y L+S ++ S+PTLFNSGTRH Sbjct: 166 HPITRKVIETPQHFMLRVASGLAQDATDHAVDEVTALYGLMSRLDYLPSSPTLFNSGTRH 225 Query: 366 PQLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 PQ+SSC+L D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G+ Sbjct: 226 PQMSSCYLLDSPQDELDSIYDRYHQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGI 285 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 +PFLK + + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D RRTH++N A+W Sbjct: 286 VPFLKTLDASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHW 345 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 +PD FM+RV + W+LFSP +V +L DL+G EF+ AY E + + + A Sbjct: 346 VPDEFMRRVNADGQWSLFSPSDVPELVDLWGAEFDAAYRAAEERGLA-----RKTMPARE 400 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNL 602 L+ +M+ L +TG+ W+TFKD N + Q V+HSSNLCTEI + ETAVCNL Sbjct: 401 LYGRMMRTLAQTGNGWMTFKDAANRTANQTAEPGHVIHSSNLCTEILEVTDDGETAVCNL 460 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL A + D+++L T+RTAV LD V+DIN + E+A +SN R +GLG MG Sbjct: 461 GSVNLGAFVRDGDIDWERLDETVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMG 520 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 Q L +P+ S A ++ E I A AS +LA+ G +++ + +GV Sbjct: 521 LQDVFFKLRLPFDSAGARALSTRIAERIMLAAYEASADLAERHGPLPAWEKTRAARGVLH 580 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 D ++ T W L++R+ +GMRNS +AIAPTATIA+I GV + I Sbjct: 581 PDHY----------DVSLTWPERWTALRERIAAVGMRNSLLLAIAPTATIASIAGVYECI 630 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P NL+ + +SG+F VNS+LVN+LK +WD L+ +GS+ + IP D++ Sbjct: 631 EPQVSNLFKRETLSGEFLQVNSYLVNDLKALGVWDARTREALRDSNGSVQDFAWIPADVR 690 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYY 902 ++ TA+EI LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYY Sbjct: 691 ALYRTAWEIPQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYY 750 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 LRSR AT + + G+ A + + S + CE CQ Sbjct: 751 LRSRPATRI----ARAAQGRTPAEAALPAQQTADPDAVACSLENPESCEACQ 798 >gi|311977696|ref|YP_003986816.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba polyphaga mimivirus] gi|81990393|sp|Q7T6Y8|RIR1_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|55664860|gb|AAQ09572.2| ribonucleotide reductase large subunit [Acanthamoeba polyphaga mimivirus] gi|308204750|gb|ADO18551.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba polyphaga mimivirus] Length = 881 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 253/849 (29%), Positives = 418/849 (49%), Gaps = 48/849 (5%) Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYK 187 A+ S + + + +G++ S+ + VE+ ++ + + + Sbjct: 54 KAKKSSNILLEVPKETIYLDHNGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFP 113 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 + + D++ +I ++ ++ +Y K+ L+ L + +K +++ Sbjct: 114 KLKSINTIKDIDNQIISTASEMVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNK 173 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 + + + + + + ++Y+RD+ G + L Y Sbjct: 174 SESN---------KNAPIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFRTLEKSYLK 224 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 IN +E PQ FMRVA+ L + R E Y LS +F +TPTLFN+GT H Q Sbjct: 225 RINKKIVERPQHLFMRVAITLHYR-KNDLDRIFETYKYLSKGYFTHATPTLFNAGTTHEQ 283 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCFL + D L I +E A+++K++GG+G T +R GA+I T G++ G+ Sbjct: 284 LSSCFLLGIGDSLEEISECWKECALISKHAGGIGIHMTNIRVEGAYIASTQGEAGGL-RV 342 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 L + ND + NQGGKR G+ ++E WH D+ FLDL+KNTG + R D+ I D Sbjct: 343 LTIFNDISRYANQGGKRPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMIND 402 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 +FM+RV ++ W+L P + +L + YG EF Y YE E ++I A+ LW Sbjct: 403 IFMERVYKDDVWSLMCPSQCPNLLNKYGDEFTKEYLKYE-----SEGIYLKQIRAIDLWF 457 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 K++ ETG P++ FKD N +S Q ++GVV+ SNLC EI S +VCNL SI L Sbjct: 458 KIMESQIETGVPYVMFKDAINDKSNQINIGVVNGSNLCCEIVEVSDKNNFSVCNLSSICL 517 Query: 608 LAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 F+Y KL R R L+N+IDIN + ++K + +N R IG+G+ G Sbjct: 518 PRFVKIIDEVPTFNYQKLFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGL 577 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + P+ S A ++ + E I + A++ S +LA+E G Y +++GS QG F Sbjct: 578 ADVFAMFKTPFDSEIARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQF 637 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + W+ L++ + G+RNS PTA+ + I G ++ I+ Sbjct: 638 DLWNFDKSQL-------SGMWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIE 690 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +N+Y +S M+G++ V+N L+ +L + +W+ M+ +KY+ GS+ NI IPD++K Sbjct: 691 PYTENIYSRSTMAGEYFVINKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKA 750 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYY 902 I+ T +EI +IE A+ R ++DQ QS+NLY+D+PS +L+ AW GLKT YY Sbjct: 751 IYRTVWEIPQKSIIEMAADRAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYY 810 Query: 903 LRSRSATSVEKSTLK-----------GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT--- 948 LRS+ A+S + + G+ + + +TD ++ + C Sbjct: 811 LRSKPASSANQFGIDIDKIKEIESKNGIKKQEDTFDLTDLTNTINQQVSGMVCRFVPAHL 870 Query: 949 ----ECEVC 953 EC C Sbjct: 871 RKPGECLSC 879 >gi|29829568|ref|NP_824202.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces avermitilis MA-4680] gi|29606676|dbj|BAC70737.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptomyces avermitilis MA-4680] Length = 793 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 305/802 (38%), Positives = 433/802 (53%), Gaps = 44/802 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + + L D V + + E++L ++ LI ++P Y+++ A Sbjct: 27 LLRTLTDLTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAA 86 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L + E + F I G + L+ + DF Sbjct: 87 RLLTISIAEEAASQGVTS----------------FSASITVGHREGLVADRTADFVRLHT 130 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + D F Y GL+ L+ RY L IE PQ F +RVA GLA +T Sbjct: 131 ARLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRRVIETPQHFMLRVASGLAEDDTSHA 190 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+ Sbjct: 191 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARLS 250 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 251 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +N W+LFSP +V +L DL+ Sbjct: 311 WHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNENGVWSLFSPADVPELVDLW 370 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EF+ AY E + I A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 371 GDEFDAAYRKAEEAGLA-----KKTIPARDLYGRMMRTLAQTGNGWMTFKDAANRTANQT 425 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VVHSSNLCTEI + ETAVCNLGS+NL A D+++L +T+RTAV L Sbjct: 426 AEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGRDIDWERLDATVRTAVTFL 485 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 486 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEAQALSTRIAERIML 545 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS +LA+ G +++ + +GV D + T W L++R Sbjct: 546 AAYEASADLAERNGPLPAWEKTRTARGVLHPDH----------FDVELTWPERWAALRER 595 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + +GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV+ELKQ Sbjct: 596 IAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKQ 655 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +WD L+ GS+ +P D++ ++ TA+EI LI+ A+ R ++DQAQS Sbjct: 656 LGVWDAQTREALRESGGSVQGFTWVPQDVRDLYRTAWEIPQRGLIDMAAARTPFLDQAQS 715 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 LNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + + + Sbjct: 716 LNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRI----ARAAQAQAQPEKTIPVQ 771 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + + S + CE CQ Sbjct: 772 QVSEPDAVACSLENPESCEACQ 793 >gi|295836583|ref|ZP_06823516.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB74] gi|197697283|gb|EDY44216.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB74] Length = 790 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 300/810 (37%), Positives = 433/810 (53%), Gaps = 43/810 (5%) Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 L + E + L D V + + E++L ++ LI ++ Sbjct: 15 EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74 Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P Y+++ AR L + E F + G + L+ + Sbjct: 75 PAYSRLAARLLAIGIVAEAAGQGAS----------------GFAASVAVGHREGLIGDRT 118 Query: 274 MDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGL 328 +F L + E D F Y GL+ LY RY L IE PQ F +RVA GL Sbjct: 119 AEFVATHAARLDALIDPEGDDRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVAAGL 178 Query: 329 ALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386 A ++ Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKG Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV + W+LFSP + Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFSPAD 358 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V +L DL+G+EFE AY E + + + A L+ +M+ L +TG W+TFKD Sbjct: 359 VPELTDLWGEEFEAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDH 413 Query: 567 CNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 N + Q VVHSSNLCTEI + ETAVCNLGSINL A N + D+++L T Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVENGEIDWERLDET 473 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +RTAV LD V+DIN + +A SN R +GLG MG Q L +P+ S A ++ Sbjct: 474 VRTAVTFLDRVVDINFYPTGQAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAAAKAVST 533 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E I A AS +LA++ G +++ + +GV D + RT Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDH----------FDVERTWPE 583 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ R+ GMRNS +AIAPTATIA+I GV + ++P NL+ + +SG+F VN Sbjct: 584 RWEALRARIAKTGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK+ +WD L+ +GS+ IP+D++ ++ TA+E+ LI+ A+ R Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERT 703 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++DQ+QSLNL+++ P+ KL +Y AW GLKTTYYLRSR AT + Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGSSAAA 760 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + P+ + + I S + CE CQ Sbjct: 761 SAPIPVQQAVPDADAIACSLENPESCEACQ 790 >gi|239929011|ref|ZP_04685964.1| ribonucleotide-diphosphate reductase large chain [Streptomyces ghanaensis ATCC 14672] gi|291437352|ref|ZP_06576742.1| class Ia ribonucleotide-diphosphate reductase large subunit chain [Streptomyces ghanaensis ATCC 14672] gi|291340247|gb|EFE67203.1| class Ia ribonucleotide-diphosphate reductase large subunit chain [Streptomyces ghanaensis ATCC 14672] Length = 793 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 299/804 (37%), Positives = 440/804 (54%), Gaps = 46/804 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + E + L D V + + E++L ++ LI ++P Y+++ A Sbjct: 25 LLRTLTELTADLPDADPGRVAAAALRGRSARADETELRELATEAAAGLISEDPAYSRLAA 84 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L +R E + F + G + L+ + F Sbjct: 85 RLLAIGIRAEAASQGVTS----------------FTGSVATGHREGLIADRTAAFVRLHA 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + D F Y GL+ L+ RY L +E PQ F +RVA GLA ++ + Sbjct: 129 DRLDALIDTGADDRFGYFGLRTLHSRYLLRHPITRKVVETPQHFLLRVAAGLAEDDSVRS 188 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+ Sbjct: 189 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 248 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 249 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 308 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV + W+LFSP +V +L DL+ Sbjct: 309 WHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFSPADVPELVDLW 368 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ Y E + + + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 369 GEEFDAVYRAAEE-----KGLARKTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQT 423 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVR 630 V+HSSNLCTEI + ETAVCNLGS+NL A D+++L T+RTAV Sbjct: 424 ATPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDRTVRTAVT 483 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 484 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEARTLSTRIAERI 543 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A AS +LA+++G +++ + +GV D ++ T W L+ Sbjct: 544 MLAAYEASADLAEDKGPLPAWEKTRTARGVLHPDHY----------DVDLTWPERWVALR 593 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R+ + G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++L Sbjct: 594 GRIASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVSDL 653 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WDE L+ GS+ IPDD+++++ TA+EI LI++A+ R ++DQA Sbjct: 654 KRLGVWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAARTPFLDQA 713 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+++ P+ KL +Y AW GLKTTYYLRSR AT + + + A Sbjct: 714 QSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI----ARAAQAQPQAQTTVP 769 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 T + S + CE CQ Sbjct: 770 VQQPTPDEAVACSLENPESCEACQ 793 >gi|328884924|emb|CCA58163.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit [Streptomyces venezuelae ATCC 10712] Length = 792 Score = 584 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 296/802 (36%), Positives = 435/802 (54%), Gaps = 43/802 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + + L D V + + E++L ++ LI ++P Y+++ A Sbjct: 25 LLRTLTDLTADLPDTDPGKVAAAALRGRSAAADEAELRELATEAAAGLIAEDPAYSRLAA 84 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L + E F + G + L+ + +F Sbjct: 85 RLLTVTIADEAAGQG----------------AFSFSASVAVGHREGLIADRTAEFVALHA 128 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + D F Y GL+ LY RY L IE PQ F +RVA GLA ++ + Sbjct: 129 DRLDATIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLRVACGLAEDDSVRA 188 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L D+L I+ + A L+ Sbjct: 189 LDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLS 248 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 249 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 308 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V +L DL+ Sbjct: 309 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLW 368 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ AY E + + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 369 GEEFDAAYRKAEAAGLA-----RKTMPARDLYGRMMRTLAQTGNGWMTFKDASNRTANQT 423 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VHSSNLCTEI + ETAVCNLGS+NL A + D+++L +T+RTAV L Sbjct: 424 AEPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGSDIDWERLDATVRTAVTFL 483 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D V+DIN + E+A +SN R +GLG MG Q L +P+ S EA ++ E I Sbjct: 484 DRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRIAERIML 543 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS +LA+ G +++ + +GV D + W L++R Sbjct: 544 AAYEASADLAERNGPLPAWEKTRTARGVLHPDHY----------DVELNWPERWAALRER 593 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + +GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV+ELK+ Sbjct: 594 IAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKK 653 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +WD L+ +GS+ +P ++++++ TA+EI LI+ A+ R ++DQ+QS Sbjct: 654 LGVWDAQTREALRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQS 713 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 LNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + A + Sbjct: 714 LNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIA---RAAQAAAPAAATIPVQQ 770 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 ++ + + S + CE CQ Sbjct: 771 ATPDADALACSLENPESCEACQ 792 >gi|194389080|dbj|BAG61557.1| unnamed protein product [Homo sapiens] Length = 683 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 255/633 (40%), Positives = 380/633 (60%), Gaps = 22/633 (3%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 + L Y L ING E PQ MRV++G+ E A+E YNLLS F Sbjct: 63 TAATFKTLERSYLLKINGKVAERPQHMLMRVSVGIH---KEDIDAAIETYNLLSERWFTH 119 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTLFN+GT PQLSSCFL ++ DD + GI+ L++ A+++K +GG+G + +R G+ Sbjct: 120 ASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGS 179 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G++P L+V N+TA V+QG KR GA YLE WH+D+ EFLDL+KNTG Sbjct: 180 YIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 239 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE Y +YE+Q Sbjct: 240 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ--- 296 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCTEI Sbjct: 297 --GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEY 354 Query: 592 SSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + +A SN Sbjct: 355 TSKDEVAVCNLASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSN 414 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A L+ P+ S EA + + E I + A+ AS +LA+E+G Y + Sbjct: 415 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYET 474 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++GS +G+ D + T W LK+++ G+RNS +A PTA Sbjct: 475 YEGSPVSKGILQYDMWNVTP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTA 524 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW E M + + +GS Sbjct: 525 STAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGS 584 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 585 IQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHF 644 Query: 891 QAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922 W GLKT YYLR+R A + + TL K Sbjct: 645 YGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLK 677 Score = 81.8 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 13/156 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNY-----AKVTAR---FLLEK---LRREVLTTVYKKPQKATHHEMQCL 251 ++ T E +Y KV R L+ + +E + + + Sbjct: 61 AETAATFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHA 120 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKY 287 P F + SM D + + + LK Sbjct: 121 SPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQ 156 >gi|302554046|ref|ZP_07306388.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces viridochromogenes DSM 40736] gi|302471664|gb|EFL34757.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces viridochromogenes DSM 40736] Length = 793 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 306/804 (38%), Positives = 439/804 (54%), Gaps = 52/804 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + E + L D V + + E++L ++ LI ++P Y+++ A Sbjct: 31 LLRTLTELTADLPDTDPGRVAAAALRGRSARADEAELRDLATEAAAGLISEDPAYSRLAA 90 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L +R E + F + G + L+ + +F Sbjct: 91 RLLTIGIRAEAASQGVTS----------------FTESVVVGHREGLIADRTAEFVRLHA 134 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + D F Y GL+ L+ RY L +E PQ F +RVA GLA T + Sbjct: 135 ARLDALIDPAADDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVAAGLAEDHTARS 194 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+ Sbjct: 195 VDEVAALYELMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 254 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 255 KHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 314 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DVEEFL+LR NTG+D RRTH++N A+W+PD FM+RV +A W+LFSP +V +L DL+ Sbjct: 315 WHSDVEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFSPSDVPELVDLW 374 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ AY E + R + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 375 GEEFDTAYRAAEA-----KGLAKRTLPARELYGRMMRTLAQTGNGWMTFKDAANRTANQT 429 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--YDKLASTIRTAVR 630 VVHSSNLCTEI +S ETAVCNLGS+NL A + D +D+L +T+RTAV Sbjct: 430 AEPGHVVHSSNLCTEILEVTSDGETAVCNLGSVNLGAFVDTSTGDLDWDRLDATVRTAVT 489 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 490 FLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRLPFDSPEAKALSTRIAERI 549 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A AS +LA+ G +++ + +GV D + T W L+ Sbjct: 550 MLAAYEASADLAERSGPLPAWEKTRTARGVLHPDHY----------DVELTWPERWAALR 599 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +R+ GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV+EL Sbjct: 600 ERIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDEL 659 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WD L+ GS+ + IP+D++ ++ TA+EI LI+ A+ R ++DQ+ Sbjct: 660 KRLGVWDARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQS 719 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + A Sbjct: 720 QSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRI----------ARAAQATVP 769 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 ++ + S + CE CQ Sbjct: 770 AQATPDPEAVACSLENPESCEACQ 793 >gi|224097022|ref|XP_002189376.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain [Taeniopygia guttata] Length = 847 Score = 582 bits (1500), Expect = e-163, Method: Composition-based stats. Identities = 267/844 (31%), Positives = 405/844 (47%), Gaps = 84/844 (9%) Query: 151 DGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 DG ++ +++ C GL V V Sbjct: 45 DGRQERVMFDKITSRIQKLCYGLNADFVDPLCVS-------------------------- 78 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLT-TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 + A+FLL L V + T M+ LY + Sbjct: 79 --------SFPGAQFLLWDLDLLVPEASQASSNPPKTCDVMEDLYTYINPHNGKHSPMIS 130 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG 327 ++ + L + + Y+RDF++ Y G + L Y L IN E PQ MRV++G Sbjct: 131 KETLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVSVG 190 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGA 386 + A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ Sbjct: 191 IH---KADIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDT 247 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRK 445 L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG KR Sbjct: 248 LKQCALISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRP 307 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P+ Sbjct: 308 GAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPN 367 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 E L D++G+EFE YE+YERQ +V R + A LW ++ ETG P++ +KD Sbjct: 368 ECPGLDDVWGEEFEKLYESYERQ-----GRVRRVVKAQQLWYAIIESQTETGTPYMLYKD 422 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAST 624 CN +S QQ++G + SNLCTEI +S EE AVCNL SI L + +D+ KLA Sbjct: 423 SCNRKSNQQNLGTIKCSNLCTEIVEYTSREEVAVCNLASIALNMYVTPEHSYDFKKLAEV 482 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI-GLGLMGFQSALHLL------------- 670 + VR L+ +IDIN + + + R L ++ L Sbjct: 483 TKVIVRNLNKIIDINYYPVPEDLNRAQFVRGAPHAELSSEETWLPQTPRSPEALPGFWGS 542 Query: 671 -------HIPYASPEAVEIADESMEFIS------------FHAISASVELAQERGAYSSF 711 Y V ++ + + S + + Sbjct: 543 GLTGLRVRCSYERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTI 602 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 K S + S + + D + + W LK+++ G+RNS ++ PTA+ Sbjct: 603 KCSNLCTEIVEYTSREEILQY-DMWNVTPSDLWDWKALKEKIAKYGVRNSLLISPMPTAS 661 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 A I G ++SI+P N+Y + +SG+F VVN L+ +L +R LW+E M + + H+GSI Sbjct: 662 TAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSI 721 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 NI IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ Sbjct: 722 QNIPEIPDDLKQLYKTVWEISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFY 781 Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 W GLKT YYLR++ A + + TL + + + + S + E Sbjct: 782 GWKQGLKTGMYYLRTKPAANPIQFTLNKEKLREREKASREEEEKERNKAAMVCSLENREE 841 Query: 950 CEVC 953 C +C Sbjct: 842 CLMC 845 >gi|290957505|ref|YP_003488687.1| ribonucleotide-diphosphate reductase large chain [Streptomyces scabiei 87.22] gi|260647031|emb|CBG70130.1| ribonucleotide-diphosphate reductase large chain [Streptomyces scabiei 87.22] Length = 802 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 304/808 (37%), Positives = 435/808 (53%), Gaps = 49/808 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD----LETALIFSSRTLIEKEPNYA 217 L + E L D V + + + ++ L ++ LI ++P Y+ Sbjct: 29 LLRTLTELTVDLPDADPGRVAAAALRGRSSRAATAEMVAELRELATEAAAGLISEDPAYS 88 Query: 218 KVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF- 276 K+ AR L +R E + F I G + L+ + +F Sbjct: 89 KLAARLLAIGIRAEAASQGVTT----------------FTESIAVGHREGLVADRTAEFV 132 Query: 277 --DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKE 332 L + D F Y GL+ L+ RY L +E PQ F +RVA GLA + Sbjct: 133 RVHGARLDALVDPAGDDRFGYFGLRTLHSRYLLRHPLTRKVVETPQHFMLRVASGLAEDD 192 Query: 333 TEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQEN 390 T + Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + Sbjct: 193 TPRAVDEVSALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQV 252 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA Sbjct: 253 ARLSKHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAV 312 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLETWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L Sbjct: 313 YLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFSPADVPEL 372 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 DL+G+EFE AY E + I+A L+ +M+ L +TG+ W+TFKD N Sbjct: 373 VDLWGEEFEAAYRKAEANGLA-----RKTIAARDLYGRMMRTLAQTGNGWMTFKDAANRT 427 Query: 571 SPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIR 626 + Q VVHSSNLCTEI + ETAVCNLGS+NL A D+++L T+R Sbjct: 428 ANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDLDWERLDETVR 487 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TAV LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ Sbjct: 488 TAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRI 547 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E I A AS +LA+ G +++ + +GV D G+ W Sbjct: 548 AERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHYGVEP----------AWSERW 597 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L++RV GMRN+ +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+L Sbjct: 598 AALRERVAATGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYL 657 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V +LK+ +WD L+ +GS+ + IP D++ ++ TA+EI LI+ A+ R + Sbjct: 658 VRDLKELGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPY 717 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 +DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + ++ Sbjct: 718 LDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIARA---AQGQARQPE 774 Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +T + S + CE CQ Sbjct: 775 TTVPVQQATSEEALACSLENPESCEACQ 802 >gi|297157410|gb|ADI07122.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces bingchenggensis BCW-1] Length = 799 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 301/800 (37%), Positives = 438/800 (54%), Gaps = 33/800 (4%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + + L V + + + G ++L T ++ LI +EP Y+K+ A Sbjct: 26 LLRTLTKLTADLPATDPGKVAAAALRGRHPGSDAAELRTLATEAAAGLIAEEPEYSKLAA 85 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E + + + E A + D + Sbjct: 86 RLLTLAIAEEAAGQGAV----SFSSSVAVGHREGLIA----DGTAEFVTSHAARLDA-LV 136 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EKR 338 L D F Y GL+ L+ RY L IE PQ F +RVA GLA +++ Sbjct: 137 DKALADGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFLLRVACGLAEDHSQRALDD 196 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 E Y L S+ ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++ Sbjct: 197 VAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKHA 256 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ +R G+ I GTNG S G++PFL+ + + AVNQGG+RKGA C YLETWH Sbjct: 257 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWHA 316 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV +A W+LFSP + L DL+G+E Sbjct: 317 DIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGEE 376 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575 F+ AY E E + + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 377 FDAAYTKAEA-----EGLAVKTVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAEP 431 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDN 634 VVHSSNLCTEI + ETAVCNLGS+NL AH + Q D+ +L +T+RTAV LD Sbjct: 432 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLGEDGQMDWARLDATVRTAVTFLDR 491 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+DIN + ++A SN R +GLGLMG Q L +P+ SPEA +++ + E I A Sbjct: 492 VVDINFYPTQEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQQLSTQISERIMLAA 551 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 AS LA+ G + ++ + +GV D T W L++R+ Sbjct: 552 YEASCALAERHGPHPAWSATRTARGVLHPDH---------YTDAVATWPERWAALRERMA 602 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LVN+LK+ Sbjct: 603 KSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKKLG 662 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +WD L+ +GS+ + +P ++++++ TA+E+ LI+ A+ R ++DQ+QSLN Sbjct: 663 VWDAQSREALRESNGSVQDFSWVPKEVRELYRTAWEVPQRALIDMAAARTPYLDQSQSLN 722 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 L++ P+ KL +Y AW G+KTTYYLRSR AT + VP+ + Sbjct: 723 LFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIA---QSARAAAPATVPIPTQQAP 779 Query: 935 THSLGIPSSCTSDTECEVCQ 954 I S + CE CQ Sbjct: 780 VDPEVIACSLENPESCEACQ 799 >gi|239944173|ref|ZP_04696110.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces roseosporus NRRL 15998] gi|239990629|ref|ZP_04711293.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces roseosporus NRRL 11379] gi|291447644|ref|ZP_06587034.1| ribonucleotide-diphosphate reductase large chain [Streptomyces roseosporus NRRL 15998] gi|291350591|gb|EFE77495.1| ribonucleotide-diphosphate reductase large chain [Streptomyces roseosporus NRRL 15998] Length = 807 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 306/799 (38%), Positives = 434/799 (54%), Gaps = 32/799 (4%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L D V + + E++L + ++ LI ++P Y+++ A Sbjct: 35 LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 94 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E + + + E + LH +D + Sbjct: 95 RLLTLSIADEAAGQGAT----SFSASVAVGHREGLIA--DRTAAFVELHAKALDELVER- 147 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EKR 338 L D F Y GL+ L+ RY L IE PQ F +RVA GLA E+ + Sbjct: 148 --TLAEGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALDE 205 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++ Sbjct: 206 VAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 265 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH Sbjct: 266 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 325 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+G Sbjct: 326 DIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGDA 385 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575 F+ AY E + + + A L+ +M+ L +TG W+TFKD N + Q Sbjct: 386 FDAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 440 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 VVHSSNLCTEI ++ ETAVCNLGS+NL A AN D+D+L ST+RTAV LD V Sbjct: 441 GRVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVANGSIDWDRLDSTVRTAVTFLDRV 500 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +DIN + E+A SN R +GLG MG Q L +P+ SPEA ++ + E I A Sbjct: 501 VDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAY 560 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+ G ++ + +GV D WD L+ RV Sbjct: 561 EASCDLAERSGPLPAWSETRAARGVLHPDHY----------DTELNWPERWDALRARVAK 610 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LV+ELK+ + Sbjct: 611 TGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLGV 670 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 WD L+ GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQ+QSLNL Sbjct: 671 WDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNL 730 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 +L+ P+ KL +Y AW GLKTTYYLRSR AT + + A S+ Sbjct: 731 FLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI--ARAASGQASAAAPIPVQQASAP 788 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + I S + CE CQ Sbjct: 789 DADAIACSLENPESCEACQ 807 >gi|299471069|emb|CBN78928.1| ribonucleotide reductase large chain subunit [Ectocarpus siliculosus] Length = 653 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 251/663 (37%), Positives = 380/663 (57%), Gaps = 29/663 (4%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 Y L +G +E PQ MRV++G+ + +K +E Y+L+S F +TPTLFN+G Sbjct: 6 RSYLLKADGKVVERPQHMIMRVSVGIHKDDIDKV---IETYDLMSQRLFTHATPTLFNAG 62 Query: 363 TRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T PQ+SSCFL T+ D + GI+ L++ A ++K++GG+G VR ++I GTNG S Sbjct: 63 TPKPQMSSCFLLTMKEDSINGIYDTLKQCAQISKHAGGIGLSIHHVRAANSYIRGTNGSS 122 Query: 422 QGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 G++P L+V N+TA V+QGG KRKG++ YLE WH D+ FLDL+KN G++ R D+ Sbjct: 123 NGIVPMLRVFNNTARYVDQGGGKRKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLF 182 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 A WIPDLFM+RV + W LF P+E L D + +EF+ YE YE + E R + Sbjct: 183 YAMWIPDLFMQRVEADGDWNLFCPNEAPGLSDTHSEEFKELYEQYEAK----EGLSRRTM 238 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW +L ETG P++ +KD CN +S Q+++G + SSNLCTEI ++ +E AVC Sbjct: 239 KARLLWDAILESQVETGTPYMLYKDACNFKSNQKNLGTIKSSNLCTEIVEYTAPDEVAVC 298 Query: 601 NLGSINLLAH-------FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 NL SINL A +D++KL R L+ VID N + IE+A+ SN H Sbjct: 299 NLASINLSALVIPPTAETTKATYDFEKLQHISEVVTRNLNRVIDANYYPIEEARNSNMRH 358 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IG+G+ G A + +P+ S EA ++ + E I F A++ASVELA+E G Y ++ G Sbjct: 359 RPIGIGVQGLADAFIKMRLPFESEEACKLNRDIFETIYFGAVNASVELAKELGPYETYAG 418 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S +G+ D G + T R W LK R+ G+RNS +A PTA+ A Sbjct: 419 SPASEGLLQFDLWG----------VKPTGRHDWAALKARMAEHGLRNSLLVAPMPTASTA 468 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G ++S++P N+Y + ++G+FTVVN +L+ +L +R LW + + + GS+ N Sbjct: 469 QILGNNESVEPFTSNMYNRRVLAGEFTVVNKYLLRDLTERGLWTPEVRNQIIADQGSVQN 528 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAW 893 + +IP +LK ++ T +EI +++ A+ R +I Q+QS+N+++ E S KL ++ AW Sbjct: 529 VRQIPQELKDLYKTVWEIKQKFILNQAADRGAYICQSQSMNVHMAEASFGKLSSMHFYAW 588 Query: 894 LMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC--TSDTEC 950 GLKT YYLR+R + T+ K++ + + + G + + EC Sbjct: 589 KKGLKTGMYYLRTRPKADAIQFTVDQSSLKVSREEAAKSGAKSGAEGGSAGLEVEEEPEC 648 Query: 951 EVC 953 C Sbjct: 649 LSC 651 >gi|239502692|ref|ZP_04662002.1| ribonucleotide-diphosphate reductase subunit alpha [Acinetobacter baumannii AB900] Length = 790 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 344/838 (41%), Positives = 480/838 (57%), Gaps = 76/838 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + +G F+ ++E V A G V S+ V+ + +YDG+ SD++ ALI Sbjct: 1 MNVTKRNGATEPFSPSKIEKAVNWAVDG-TSVESQEVIDKAILLIYDGIKTSDIQQALIK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + L+ + + + V+AR LL L + V K + + Y+E+G Sbjct: 60 GAAKLVSATKADASLVSARLLLLDLYKTVCGVNGKVSGGGFQY-------PHIKDYLEKG 112 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN------------- 310 V +LL ++++DL + +K ERD +F YLGL L DRYF+ N Sbjct: 113 VSLKLLDPELLNYDLERINAAIKPERDLSFHYLGLDTLADRYFIRANRDIRLEKETGNMS 172 Query: 311 GSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 G+ IE+PQ F+MRVAMG+ALKE + A+ +Y L S ++ STPTLFN+GT HPQL Sbjct: 173 GNIIELPQHFWMRVAMGVALKEKPEIRTSVALAYYELYSKLEYVSSTPTLFNAGTLHPQL 232 Query: 369 SSCFLTTVPD---------DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 SSC+L V D IFGA++E A+L+K++GG+G DWTPVRG I GTNG Sbjct: 233 SSCYLNQVSDTIAADEGDNRFASIFGAIEETALLSKFAGGIGTDWTPVRGENELIFGTNG 292 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 S GV+P++KV N+TAVAVNQGGKRKG+V YLE WH D F +L++ +GDDRRR HD+ Sbjct: 293 ISSGVVPYIKVQNNTAVAVNQGGKRKGSVAPYLEAWHPDFMAFCELKRESGDDRRRAHDV 352 Query: 480 NTANWIPDLFMKRVTQNA-GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 A W+PDL ++R W+ FSP +LH+LYG++F YE E + Sbjct: 353 FPAAWVPDLLIERKEDPNAMWSFFSPKRFPELHELYGEDFVKRYEELEAA-----GEYDF 407 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 ++ A+ +WR +LT LFETGHPWIT+KD CN R+PQQH GV+H SNLCTEITLN+S +ETA Sbjct: 408 QLPAIQVWRHLLTNLFETGHPWITYKDECNRRNPQQHAGVIHHSNLCTEITLNTSKDETA 467 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNLGSINL + ++L IR A+R LD+VID+N + ++A SN HR IGL Sbjct: 468 VCNLGSINLSQVMSAPNP-LERLREVIRLAIRNLDSVIDVNYYPSDRASNSNFKHRPIGL 526 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G+MG+ L + + S E ++ AD E IS+ AI AS +LAQERG+Y SF+GS W + Sbjct: 527 GVMGYYEWLVKQGVDFESEEHLKQADALFEAISYFAIEASADLAQERGSYPSFEGSNWSK 586 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G+ PID+ L+ + + R R W+ L+++VK GMRNSN MAIAPTATI+NI G Sbjct: 587 GILPIDNAKLMEDGKPFFDQPR--RFDWEALREKVKK-GMRNSNVMAIAPTATISNIAGT 643 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 +Q +P + Y KSN+ G + VV+ H G Sbjct: 644 TQCTEPPFLLEYFKSNLGGTYQVVDPA-------------------IAHVG--------- 675 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 D + ++ +D +++I++A+ RQKWIDQ+QS NL+ +G+ LD Y A +GL Sbjct: 676 -DKYHLLKESYYVDQLYIIKAAAVRQKWIDQSQSTNLFAKQGTTGRDLDLWYTTAKKLGL 734 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 KTTYYLR++S EKS S + P C+ D +CE CQ Sbjct: 735 KTTYYLRNQS--DAEKSASMRTKVIAELANAALGKLSEPTESAPKMCSILDPDCESCQ 790 Score = 45.6 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79 + V KRNG F PSKI +A+ AV+G + I + + Sbjct: 1 MNVTKRNGATEPFSPSKIEKAVN---WAVDGTSVESQEVIDKAILLIYDGI 48 >gi|38344004|emb|CAC17631.2| class I ribonucleotide-diphosphate reductase large chain [Streptomyces microflavus] Length = 793 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 301/804 (37%), Positives = 433/804 (53%), Gaps = 49/804 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L I+ E + L D V + + + G ++L ++ LI ++P Y+++ A Sbjct: 28 LLRILTELTADLPDTDPGRVAAAALRGRHPGSDTAELRELATEAAAGLIAEDPAYSRLAA 87 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L + E F + G + L+ E +F Sbjct: 88 RLLTLTIAEEAAGQGAVS----------------FSESVATGHREGLIAERTAEFAALHA 131 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + + D F Y GL+ LY RY L IE PQ F + VA GLA ++ + Sbjct: 132 DRLDSAIDPAGDDRFGYFGLRTLYSRYLLRHPITRKVIETPQHFMLGVAAGLAEDDSVRA 191 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+ Sbjct: 192 LDEVTALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLS 251 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 252 KHAGGIGLAYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 311 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V +L DLY Sbjct: 312 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPELVDLY 371 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EF+ AY E + + + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 372 GAEFDAAYVAAEA-----KGLARKTMPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 426 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVR 630 VVHSSNLCTEI + ETAVCNLGS+ L A D+++L +T+RTAV Sbjct: 427 AEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSVKLGAFVDTASGELDWERLDATVRTAVT 486 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L +P+ S EA ++ E I Sbjct: 487 FLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLKLPFDSAEARALSTRISERI 546 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A AS +LA+ G ++ + +GV D + T W L+ Sbjct: 547 MLAAYEASADLAERNGPLPAWDKTRTARGVLHHDHY----------DVELTWPERWAALR 596 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R+ +GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LV+EL Sbjct: 597 ARIAEVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDEL 656 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WD L+ GS+ + +P + + ++ TA+EI LI+ A+ R ++DQA Sbjct: 657 KRLGVWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAARTPFLDQA 716 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+++ P+ KL +Y AW GLKTTYYLRSR + A PV Sbjct: 717 QSLNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSR-------PATRIARAARAAAPVPA 769 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 + + + I S + CE CQ Sbjct: 770 QSQAPDADAIACSLENPESCEACQ 793 >gi|182436092|ref|YP_001823811.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464608|dbj|BAG19128.1| putative ribonucleoside-diphosphate reductase large subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 804 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 306/800 (38%), Positives = 432/800 (54%), Gaps = 34/800 (4%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L D V + + E++L + ++ LI ++P Y+++ A Sbjct: 32 LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E + + + E ++ L L Sbjct: 92 RLLTRTIADEAAGQGAT----SFSASVAVGHREGLIA------DRTAAFVALHATALDQL 141 Query: 282 -ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337 L D F Y GL+ L+ RY L IE PQ F +RVA GLA E+ + Sbjct: 142 VGQALTDGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALD 201 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K+ Sbjct: 202 EVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKH 261 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 +GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH Sbjct: 262 AGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWH 321 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+G Sbjct: 322 ADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGD 381 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574 F+ AY E + + + A L+ +M+ L +TG W+TFKD N + Q Sbjct: 382 AFDAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAE 436 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 VVHSSNLCTEI + ETAVCNLGS+NL A AN D+D+L ST+RTAV LD Sbjct: 437 PGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLDSTVRTAVTFLDR 496 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+DIN + E+A SN R +GLG MG Q L +P+ SPEA ++ + E I A Sbjct: 497 VVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAA 556 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 AS +LA+ G ++ + +GV D D WD L+ RV Sbjct: 557 YEASCDLAERSGPLPAWSKTRAARGVLHPDHYATELNWPDR----------WDALRARVA 606 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LV+ELK+ Sbjct: 607 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLG 666 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +WD L+ GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQ+QSLN Sbjct: 667 VWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 726 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 L+L+ P+ KL +Y AW GLKTTYYLRSR AT + + A S+ Sbjct: 727 LFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI--ARAASGQASAAAPLPVQQASA 784 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + I S + CE CQ Sbjct: 785 PDADAIACSLENPESCEACQ 804 >gi|307328556|ref|ZP_07607730.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces violaceusniger Tu 4113] gi|306885824|gb|EFN16836.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces violaceusniger Tu 4113] Length = 804 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 307/803 (38%), Positives = 441/803 (54%), Gaps = 34/803 (4%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L V + + + G E++L I ++ LI +EP Y+++ A Sbjct: 26 LLRTLTGLTADLPATDPGKVAAAALRGRHPGSDEAELRGLAIEAAAGLIAEEPEYSRLAA 85 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E + +Q + E + + L L Sbjct: 86 RLLALTITEEAAGQGAV----SFSTSVQVGHREGLLA------DSTAEFAAAHAARLDAL 135 Query: 282 -ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337 L D F Y GL+ LY RY L IE PQ F +RVA GLA +E+ Sbjct: 136 VERALADGADKRFGYFGLRTLYSRYLLRHPITRQVIETPQHFLLRVACGLAEDLSERALD 195 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396 E Y L S+ ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K+ Sbjct: 196 DVAELYRLTSTLSYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYNRYHQVARLSKH 255 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 +GG+G ++ +R G+ I GTNG S G++PFL+ + + AVNQGG+RKGA C YLETWH Sbjct: 256 AGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLRTLDASVAAVNQGGRRKGAACVYLETWH 315 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV +A W+LFSP + L DL+G Sbjct: 316 ADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFSPVDAPALVDLWGD 375 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574 EF+ AY E E + +++ A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 376 EFDAAYRKAEA-----EGRAVKQVPARQLYARMMRTLAQTGNGWMTFKDAANRTANQTAE 430 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLD 633 VVHSSNLCTEI ++ ETAVCNLGS+NL AH + Q D+++L +T+ TAV LD Sbjct: 431 PGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLDEDGQVDWERLDATVHTAVTFLD 490 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V+DIN + ++A SN R +GLGLMG Q L +P+ SPEA ++ E I Sbjct: 491 RVVDINFYPTDEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKALSTRISERIMLA 550 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A AS ELA+ G + ++ + +GV D T W+ L+ R+ Sbjct: 551 AYEASCELAERHGPHPAWSETRTARGVLHPDH---------YTDAVATWPERWEALRTRM 601 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++LK+ Sbjct: 602 AKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKKL 661 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +WD L+ +GS+ +P D++ ++ TA+EI LIE A+ R ++DQ+QSL Sbjct: 662 GVWDAHTREALRESNGSVQEFSWVPADVRDLYRTAWEIPQRALIEMAAARTPYLDQSQSL 721 Query: 874 NLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 NL++ P+ KL +Y AW G+KTTYYLRSR AT + +S G P P Sbjct: 722 NLFMASPTIGKLSSMYAYAWKRGIKTTYYLRSRPATRIAQSARGGGAAATAPAPALIPVQ 781 Query: 934 STHSLGIPSSCT--SDTECEVCQ 954 + +C+ + CE CQ Sbjct: 782 QAPAEADAIACSLENPESCEACQ 804 >gi|326776717|ref|ZP_08235982.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces cf. griseus XylebKG-1] gi|326657050|gb|EGE41896.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces cf. griseus XylebKG-1] Length = 804 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 305/800 (38%), Positives = 432/800 (54%), Gaps = 34/800 (4%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L D V + + E++L + ++ LI ++P Y+++ A Sbjct: 32 LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E + + + E ++ L L Sbjct: 92 RLLTRTIADEAAGQGAT----SFSASVAVGHREGLIA------DRTAAFVALHATALDQL 141 Query: 282 -ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337 L D F Y GL+ L+ RY L IE PQ F +RVA GLA E+ + Sbjct: 142 VGQALTDGADDRFGYFGLRTLHSRYLLRHPITRQVIETPQHFMLRVAAGLAEDESVRALD 201 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K+ Sbjct: 202 EVAALYGLMSKLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKH 261 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 +GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH Sbjct: 262 AGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWH 321 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+G Sbjct: 322 ADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELVDLWGD 381 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574 F+ AY E + + + A L+ +M+ L +TG W+TFKD N + Q Sbjct: 382 AFDAAYRAAEA-----KGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAE 436 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 VVHSSNLCTEI + ETAVCNLGS+NL A AN D+D+L +T+RTAV LD Sbjct: 437 PGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVANGSIDWDRLDATVRTAVTFLDR 496 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+DIN + E+A SN R +GLG MG Q L +P+ SPEA ++ + E I A Sbjct: 497 VVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAA 556 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 AS +LA+ G ++ + +GV D D WD L+ RV Sbjct: 557 YEASCDLAERSGPLPAWSRTRAARGVLHPDHYATELNWPDR----------WDALRARVA 606 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN++LV+ELK+ Sbjct: 607 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLG 666 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +WD L+ GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQ+QSLN Sbjct: 667 VWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 726 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 L+L+ P+ KL +Y AW GLKTTYYLRSR AT + + A S+ Sbjct: 727 LFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRI--ARAASGQASAAAPLPVQQASA 784 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + I S + CE CQ Sbjct: 785 PDADAIACSLENPESCEACQ 804 >gi|256391239|ref|YP_003112803.1| ribonucleoside-diphosphate reductase, subunit alpha [Catenulispora acidiphila DSM 44928] gi|256357465|gb|ACU70962.1| ribonucleoside-diphosphate reductase, alpha subunit [Catenulispora acidiphila DSM 44928] Length = 841 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 307/800 (38%), Positives = 435/800 (54%), Gaps = 53/800 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L D+ V+ +T+ + G + + S+ LI +EP Y+K+ A Sbjct: 88 LAREIAACSADLPDIDVNRVVRKTFAGLPPGAGADQVADLAVQSAAELIGEEPQYSKLAA 147 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + RE + + + E + E+++ Sbjct: 148 RLLSGVIAREAAGQGAT----SFSASVAVGHREGL---------IGDVTEALITGAAARF 194 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 + D FEY GL+ +YDRY L IE PQ F +RVA GL+ + A Sbjct: 195 DAAIDPAGDLRFEYFGLRTVYDRYLLRHPVTRRVIETPQHFLLRVAAGLSQ----DPQEA 250 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSG 398 V FY L+SS ++ S+PTLFNSGTRH Q+SSC+L P D+L I+ + A L+K++G Sbjct: 251 VGFYRLMSSLAYLPSSPTLFNSGTRHTQMSSCYLVDSPLDELDSIYDRYHQVARLSKFAG 310 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G ++ VR GA I TNG+S G++PFL+ + + AVNQGG+RKGA C YLE WH D Sbjct: 311 GIGIGFSRVRSRGALIRSTNGRSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLEPWHPD 370 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 +EEFL LR NTG+D RRTH++N ANWIPD FM+RV + W+L PD+V +L DL+G EF Sbjct: 371 IEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMDPDQVPELPDLWGAEF 430 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--HV 576 + AY E E + R++SA L+ KM+ L +TG+ W+TFKD N Q Sbjct: 431 DAAYRKAEA-----EGRYSRQVSARELYGKMMRTLAQTGNGWMTFKDASNQLCNQTGVPG 485 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDN 634 VH SNLCTEI SS ETAVCNLGSINL AH + D+D+L +T+RTAV LD Sbjct: 486 NTVHLSNLCTEIIEVSSDTETAVCNLGSINLAAHLTPARDAVDWDRLRATVRTAVVFLDR 545 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 VIDIN + E+ SN R +GLGLMG Q L +P+ A E++ E I A Sbjct: 546 VIDINYYPSEQTAASNPRWRPVGLGLMGLQDVFFALRLPFDDERARELSTRISEEIYLTA 605 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 + S LA+E GA+ +F + +G D +A + W+ ++ RV Sbjct: 606 LETSAGLAEEFGAHPAFADTRAAKGDLQPDLWN--------VATSPELATRWNAVRGRVA 657 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS +AIAPTATIA+I G + I+P NL+ + +SG+F +NS LV ELK Sbjct: 658 ATGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFLQINSALVGELKALG 717 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 LW A+ +K +GS+ +E +P +++ ++ TA+E+ LI+ A+ R +IDQ+QSLN Sbjct: 718 LWTPAVREAIKRAEGSVQGVEALPAEVRALYRTAWELPQRALIDLAAARGPFIDQSQSLN 777 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 L+L P+ KL +Y AW GLK+TYYLRSR AT +++ + Sbjct: 778 LFLAAPTIGKLSSMYMYAWKAGLKSTYYLRSRPATRIQQ----------------ATVAV 821 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + S + CE CQ Sbjct: 822 AAEEAVACSLENPESCEACQ 841 >gi|301629347|ref|XP_002943804.1| PREDICTED: ribonucleoside-diphosphate reductase subunit alpha-like [Xenopus (Silurana) tropicalis] Length = 1234 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 344/613 (56%), Positives = 430/613 (70%), Gaps = 16/613 (2%) Query: 5 KDVNKGDEDAFPSLAYPF--PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA 62 + P+ A + Q+++RNG V +F+P KI+ A+MKAF+AV G Sbjct: 7 TPSSTHANPVLPAFAATARAQSALAHYQILRRNGSVAAFEPQKIAVALMKAFLAVHGTQG 66 Query: 63 SRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 + S V++++ LT V L + HIED+QDQVE LM+ GHH++ R YVLY Sbjct: 67 AASASVREVVDELTHTVVRALARSRPGGGTFHIEDVQDQVELGLMRGGHHEVARAYVLY- 125 Query: 123 EERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIV 181 + P AP + ++ D+G + + RL +V ACSGL +V + + Sbjct: 126 -RERRAQERAQQQAQLLPQAPAIHVV-DNGQRVLLDPLRLRALVASACSGLSSEVQPEPI 183 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET +N+YDG+ ++ A I ++RTLIEK+P+Y TAR LL + REVL Sbjct: 184 VAETLRNLYDGIPMDEVYKASILAARTLIEKDPDYTYATARLLLHTIVREVLGQ------ 237 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 M Y F + I++GV LL ++ FDL LA L+ +RD F+YLGLQ L Sbjct: 238 DVAPAAMGEAYANSFPQCIQKGVDNELLDPQLLQFDLPRLAKALQAQRDLQFDYLGLQTL 297 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETE----KEKRAVEFYNLLSSFHFMCSTPT 357 YDRYFLH+ +RIE+PQ+FFMRVAMGLAL+E + +RA+EFY +LSSF FM STPT Sbjct: 298 YDRYFLHVRKARIELPQSFFMRVAMGLALREGDLQTTGTERAIEFYEVLSSFDFMSSTPT 357 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 LFNSGT QLSSC+LTTVPD+L GI+ A++ENA+L+K++GGLGNDWT VR LG+HI GT Sbjct: 358 LFNSGTLRSQLSSCYLTTVPDNLEGIYEAIKENALLSKFAGGLGNDWTRVRALGSHIKGT 417 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 NG+SQGV+PFLKV NDTAVAVNQGGKRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTH Sbjct: 418 NGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTH 477 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 DMNTANWIPDLFMKRV WTLFSP E DLHDLYG+ FE AY YE ADRGE+ +F Sbjct: 478 DMNTANWIPDLFMKRVMDKGQWTLFSPSETPDLHDLYGQAFERAYCAYEAMADRGELTLF 537 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 ++++AV LWRKML+MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN+S ET Sbjct: 538 KRVAAVDLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTSETET 597 Query: 598 AVCNLGSINLLAH 610 AVCNLGS+NLL H Sbjct: 598 AVCNLGSVNLLRH 610 Score = 326 bits (836), Expect = 1e-86, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 228/353 (64%), Gaps = 19/353 (5%) Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKK--SNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +K+ ++ + + +++ ++ +L+ L IPYAS Sbjct: 884 EKIYKLVQISTCFFRMNNQPSKYSLPDIREVWXXXXXXXXXXXXXXXXXSLYELRIPYAS 943 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DE 735 AV ADESME I ++A AS ELA+ERG Y+S++GSLW++G+ P+D++ LL + R Sbjct: 944 DAAVAFADESMEAICYYAYWASTELAKERGQYASYRGSLWERGILPLDTLNLLQQARDGH 1003 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + ++R++RL WD L+K++ GMRN+NC+AIAPTATI+NI GV SI+PS+ NL VKSN+ Sbjct: 1004 VQVDRSTRLDWDALRKKIAQDGMRNANCVAIAPTATISNIVGVDASIEPSFGNLSVKSNL 1063 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+FTVVN++LV +LK+ LWD+ M+ DLK+ GS+ I+R P DLK ++ATAFE++P W Sbjct: 1064 SGEFTVVNAYLVRDLKRLGLWDDVMVMDLKHFKGSLQPIDRAPQDLKALYATAFEVEPRW 1123 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 L+E+ASRRQKWIDQAQSLN+Y+ SGKKLD Y+ AW+ GLKTTYYLR++SAT VE ST Sbjct: 1124 LVEAASRRQKWIDQAQSLNIYMGGASGKKLDETYKLAWVRGLKTTYYLRTQSATHVEMST 1183 Query: 916 LKGVDGKLNAVPVTDPNS--------------STHSLGIPSSCTSDTECEVCQ 954 + +LNAV P+ +T + + D CE CQ Sbjct: 1184 VNKR--QLNAVASHGPDDALEAAAAAAQAQMNATPATDVKFCALDDPGCEACQ 1234 >gi|68304287|ref|YP_249755.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973116|gb|AAY84082.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 780 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 266/819 (32%), Positives = 424/819 (51%), Gaps = 55/819 (6%) Query: 146 KIMMDDGTL-ISFNSKRLEMIVEEACSGLQD----VSSKIVLSETYKNMYDGLSESDLET 200 ++++ +G I N ++ + L+ + + + + +YD + E + E Sbjct: 6 QMILRNGRESIKVNMDYIKTYLYTRSGDLKKNKEYIDFNYIADKIFCGIYDNIHEDEFEE 65 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + K Y+ + + KL + K + + + L ++ I Sbjct: 66 YSANVCASQTYKHYVYSDLAVVIAVNKLHAKTEDDYSKVVEILWKNGI--LCDSFYSIVI 123 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQA 319 + L + + Y+ D + Y GL L +Y + ++ +E PQ Sbjct: 124 KH---------------LDSINASISYDFDKHYTYFGLMTLIEGKYLMRVDNIVVERPQH 168 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-D 378 MRVA+ + + E A+E Y L+ + F ++PTLF+SG + PQ+SSC+L + D Sbjct: 169 MLMRVALQIHGDDIE---SAIESYRLMRAKLFTHASPTLFSSGMKMPQMSSCYLLNIQED 225 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + GI+ L + AM++K+ GG+G + T +R + I TNG + G+ P L+V N V Sbjct: 226 SINGIYKTLNDCAMISKHGGGIGLNVTQIRATNSKIESTNGTAAGLGPALRVFNSMLRHV 285 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGGKRKGA+ Y+E WH DV FLDL++N G + + D+ A W PDLFMKRV Sbjct: 286 DQGGKRKGAMTVYIEPWHADVFTFLDLKRNMGAEDMKARDLLFAMWTPDLFMKRVKTGGK 345 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+L PDE L+D YG+EFE YENYE E K ++ISA+ L RK++ ETG Sbjct: 346 WSLMCPDECPGLNDCYGQEFEDLYENYEA-----EGKFKKQISALDLHRKIIETQVETGA 400 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQF 616 P++ FKD N ++ Q++ GV+ +SNLC EI S + ETAVCNL SI N A+ F Sbjct: 401 PYMMFKDHVNNKNNQKNEGVIRNSNLCAEIVQYSDNRETAVCNLASIAVNNFANKQFKSF 460 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ L + R L+ +ID+N + + A+ SN HR IG+G+ G +L +PY S Sbjct: 461 DFKSLYNVSRVVTNNLNKIIDLNFYPLASAQASNFRHRPIGIGIQGLADTFAILDMPYDS 520 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ + E I + A+S S+ELA+ G Y S+ GS G+ D + Sbjct: 521 QEARDLNKKISETIYYGALSQSIELAKLHGTYDSYDGSPASCGLLQFDLWNINQSN---- 576 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WDELK+ + G+RNS +A PTAT A I G ++S +P NLYV+ +S Sbjct: 577 -----DLWNWDELKREMAMHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLS 631 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G++ VVN LV++L +++ ++ + ++GS+ NI+ IP ++K + TA+EI + Sbjct: 632 GEYQVVNQHLVDKLVDTNVYSTDIMIKIIKNNGSVQNIDEIPHNIKALFKTAWEIKQKVV 691 Query: 857 IESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 ++ A+ R +IDQ+QSLNL++ P+ K L I+ +W GLKT YYLR++ A + + T Sbjct: 692 LDMAAERGPYIDQSQSLNLFVANPTYKVLSSIHDYSWEKGLKTGMYYLRTKPAANTIQFT 751 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + N + + + +C CE CQ Sbjct: 752 V---------PSSSAINRANNEPDVVDACYI--GCESCQ 779 >gi|74229829|ref|YP_309033.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV] gi|72259743|gb|AAZ67514.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV] Length = 772 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 262/814 (32%), Positives = 417/814 (51%), Gaps = 55/814 (6%) Query: 150 DDGTLISFNSKRLEMIV----EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 +G + ++ + + + + + + +YD + + + E Sbjct: 4 RNGQSAVVDFDSIKSYLYCRSGDLTKNKEHIDFDHIADKIINGIYDNIDQDEFEDYSARV 63 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + K Y+ + A + KL + + Y + GV Sbjct: 64 CASQTYKHYVYSDLAAMIAINKLHAKT----------------EDDYSKVVDILWRNGVL 107 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL-YDRYFLHINGSRIEMPQAFFMRV 324 + + + + + Y+ D + Y GL + Y + +N +E PQ MRV Sbjct: 108 CDSFYWIAVK-NANVINAAISYDFDKQYTYFGLMTMIEGGYLMRVNNVTVERPQHMLMRV 166 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGI 383 A+ + E + A+E Y L+ S F ++PTLF+SG + PQ+SSC+L + D + GI Sbjct: 167 ALQIHG---EDIESAIESYRLMRSKLFTHASPTLFSSGMKMPQMSSCYLLNIQEDSINGI 223 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + L + AM++K+ GG+G + + +R + I TNG + G+ P L+V N V+QGGK Sbjct: 224 YKTLNDCAMISKHGGGIGLNVSQIRAANSKIKSTNGTAAGLGPALRVFNSMLRHVDQGGK 283 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKGA+ Y+E WH D+ FLDL++N G + + D+ A W P LFMKRV+ W+L Sbjct: 284 RKGALAVYIEPWHADIFTFLDLKRNMGAEDMKARDLFFAMWTPSLFMKRVSAGEKWSLMC 343 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 PDE L+D YG+EFE YE+YE Q K +I A+ L RK++ + ETG P++ Sbjct: 344 PDECPGLNDCYGEEFERLYESYETQ-----GKFKEQILALDLHRKIIEIQVETGGPYMLH 398 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKL 621 KD N ++ Q+++GV+ +SNLC EI S ++ETAVCNL SI N A+ FD++ L Sbjct: 399 KDNVNEKNNQKNLGVIRNSNLCAEIVQYSDNKETAVCNLASIAVNCFANKRTKNFDFESL 458 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 R L+ +ID N + + A+ SN HR IG+G+ G A +L++PY S +A E Sbjct: 459 YKVARVVTNNLNKIIDKNFYPLTSAQVSNFKHRPIGIGIQGLADAFAILNLPYDSQQARE 518 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + E I + A+S S+ELA+ GAY S+ GS G D + Sbjct: 519 LNRKISETIYYGALSQSIELAKLHGAYDSYNGSPASSGHLQFDLWNISQSN--------- 569 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 WDELK+++ G+RNS +A PTAT A I G ++S +P NLYV+ +SG++ + Sbjct: 570 DLWNWDELKRQMAIHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQI 629 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 VN LV++L +++ ++ + ++GS+ NI+ IP D+K + TA+EI L+ A+ Sbjct: 630 VNQHLVDKLVDCNVYSTELMMKIIKNNGSVQNIDDIPHDVKALFKTAWEIKQKVLLNMAA 689 Query: 862 RRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 R +IDQ+QSLNL++ PS K L I+ +W GLKT YYLR++ A + + T+ Sbjct: 690 DRGPYIDQSQSLNLFVANPSYKILSSIHNYSWEKGLKTGMYYLRTKPAANTIQFTV---- 745 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 P + P + + +C CE CQ Sbjct: 746 ------PSSSPFTKPSTDDAELTCYV--GCESCQ 771 >gi|21223594|ref|NP_629373.1| ribonucleotide-diphosphate reductase large chain [Streptomyces coelicolor A3(2)] gi|8546892|emb|CAB94611.1| ribonucleotide-diphosphate reductase large chain [Streptomyces coelicolor A3(2)] Length = 791 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L V + + E++L ++ LI ++P Y+++ A Sbjct: 27 LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 86 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L +R E + F + G + L+ + F Sbjct: 87 RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 130 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + D F Y GL+ LY RY L +E PQ F +RVA GLA +T + Sbjct: 131 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTVRA 190 Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 V Y L+S ++ S+PTLFNSGTRH Q+SSC+L P D+L ++ L + A L+ Sbjct: 191 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 250 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ VR G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 251 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+ Sbjct: 311 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 370 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ AY E R + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 371 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 425 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630 VVHSSNLCTEI + ETAVCNLGS+NL A D+++L +T+RTAV Sbjct: 426 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 485 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 486 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 545 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A S +LA+ G +++ + +GV D G+ W L+ Sbjct: 546 MLAAYETSADLAERNGPLPAWEKTRTARGVLHPDHYGVEP----------AWPERWAALR 595 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R+ T G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++L Sbjct: 596 ARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 655 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WD L+ +GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQA Sbjct: 656 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 715 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR A + Sbjct: 716 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 767 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 ++ + S + CE CQ Sbjct: 768 VQAAPDPEAVACSLENPESCEACQ 791 >gi|7328344|emb|CAB82485.1| class I ribonucleotide-diphosphate reductase large subunit chain [Streptomyces coelicolor A3(2)] Length = 791 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L V + + E++L ++ LI ++P Y+++ A Sbjct: 27 LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 86 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L +R E + F + G + L+ + F Sbjct: 87 RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 130 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + D F Y GL+ LY RY L +E PQ F +RVA GLA +T + Sbjct: 131 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTVRA 190 Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 V Y L+S ++ S+PTLFNSGTRH Q+SSC+L P D+L ++ L + A L+ Sbjct: 191 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 250 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ VR G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 251 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+ Sbjct: 311 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 370 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ AY E R + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 371 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 425 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630 VVHSSNLCTEI + ETAVCNLGS+NL A D+++L +T+RTAV Sbjct: 426 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 485 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 486 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 545 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A S +LA+ G +++ + +GV D G+ W L+ Sbjct: 546 MLAAYETSADLAERNGPLPAWEKTRTARGVLHPDHYGVEP----------AWPERWAALR 595 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R+ T G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++L Sbjct: 596 ARMATTGLRNSMLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 655 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WD L+ +GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQA Sbjct: 656 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 715 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR A + Sbjct: 716 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 767 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 ++ + S + CE CQ Sbjct: 768 VQAAPDPEAVACSLENPESCEACQ 791 >gi|256785294|ref|ZP_05523725.1| ribonucleotide-diphosphate reductase large chain [Streptomyces lividans TK24] Length = 791 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L V + + E++L ++ LI ++P Y+++ A Sbjct: 27 LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 86 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L +R E + F + G + L+ + F Sbjct: 87 RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 130 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + D F Y GL+ LY RY L +E PQ F +RVA GLA +T + Sbjct: 131 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTLRA 190 Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 V Y L+S ++ S+PTLFNSGTRH Q+SSC+L P D+L ++ L + A L+ Sbjct: 191 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 250 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ VR G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 251 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 310 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+ Sbjct: 311 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 370 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ AY E R + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 371 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 425 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630 VVHSSNLCTEI + ETAVCNLGS+NL A D+++L +T+RTAV Sbjct: 426 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 485 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 486 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 545 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A S +LA+ G +++ + +GV D G+ W L+ Sbjct: 546 MLAAYETSADLAERNGPLPAWEKTRTAKGVLHPDHYGVEP----------AWPERWAALR 595 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R+ T G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++L Sbjct: 596 ARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 655 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WD L+ +GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQA Sbjct: 656 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 715 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR A + Sbjct: 716 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 767 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 ++ + S + CE CQ Sbjct: 768 VQAAPDPEAVACSLENPESCEACQ 791 >gi|289769188|ref|ZP_06528566.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces lividans TK24] gi|289699387|gb|EFD66816.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces lividans TK24] Length = 794 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 301/804 (37%), Positives = 432/804 (53%), Gaps = 50/804 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L V + + E++L ++ LI ++P Y+++ A Sbjct: 30 LLRTLTGLTADLPGADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPVYSRLAA 89 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L +R E + F + G + L+ + F Sbjct: 90 RLLTIGIRAEAASQGVVT----------------FTDSVATGHREGLIADRTAAFVRLHA 133 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE 336 L + + D F Y GL+ LY RY L +E PQ F +RVA GLA +T + Sbjct: 134 DRLDALIDQDADDRFGYFGLRTLYSRYLLRHPITRKAVETPQHFLLRVAAGLAEDDTLRA 193 Query: 337 KRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLA 394 V Y L+S ++ S+PTLFNSGTRH Q+SSC+L P D+L ++ L + A L+ Sbjct: 194 ADEVAALYGLMSRLDYLPSSPTLFNSGTRHAQMSSCYLLDSPKDELDSLYDRLHQVARLS 253 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ VR G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 254 KHAGGIGIAYSRVRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 313 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH DVEEFL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+ Sbjct: 314 WHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFSPADVPELTDLW 373 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ AY E R + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 374 GEEFDAAYRRAEEAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 428 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVR 630 VVHSSNLCTEI + ETAVCNLGS+NL A D+++L +T+RTAV Sbjct: 429 ATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDATVRTAVT 488 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ E I Sbjct: 489 FLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALSTRIAERI 548 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A S +LA+ G +++ + +GV D G+ W L+ Sbjct: 549 MLAAYETSADLAERNGPLPAWEKTRTAKGVLHPDHYGVEP----------AWPERWAALR 598 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R+ T G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV++L Sbjct: 599 ARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDL 658 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WD L+ +GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQA Sbjct: 659 KRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQA 718 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR A + Sbjct: 719 QSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPA--------TRIARAAARATTVP 770 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 ++ + S + CE CQ Sbjct: 771 VQAAPDPEAVACSLENPESCEACQ 794 >gi|149916692|ref|ZP_01905194.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis pacifica SIR-1] gi|149822409|gb|EDM81798.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis pacifica SIR-1] Length = 792 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 308/808 (38%), Positives = 435/808 (53%), Gaps = 61/808 (7%) Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 E +GL V + + ++T + L+ L ++ I +EP+Y+K+ AR Sbjct: 29 ARAEGWTAGLDGVELERLFAQTRERAPADADRETLDELLARTAVGWIVEEPDYSKLAARI 88 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVY 280 L + RE + F +E + L + ++F Sbjct: 89 LAGAIAREAASQGVTS----------------FLNSVETLHRLGLGNARALNFARAHAAT 132 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKR 338 L L E D FEY GL+ ++DRY + +R +E PQ FFMRVA LA+ E Sbjct: 133 LEAALDREGDRRFEYFGLRTVFDRYLMRHPKTRRVLETPQHFFMRVAAALAVDPDE---- 188 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 AV Y L S ++ S+PTLFN+GT QLSSCFL P D L I+ + A L+K+S Sbjct: 189 AVALYGLFSRLDYLPSSPTLFNAGTHREQLSSCFLLDSPADHLVDIYERYTDVAKLSKFS 248 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G + VR G+ I TNG S G++P+LK + + AVNQGG+RKGA C YLETWH Sbjct: 249 GGIGLAYHRVRSRGSLIGDTNGHSNGIVPWLKTLDASVAAVNQGGRRKGACCVYLETWHA 308 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ EFL+LR NTG++ R H++N ANWIPD FM+RV + GW+LF P V DLYG+ Sbjct: 309 DLPEFLELRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFDPKTVRHFPDLYGEA 368 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QH 575 F AY ER + A L+ +M+ L +TG+ W+ FKD CN Q + Sbjct: 369 FTRAYVEAERAGLA-----VATLPARELYARMMRTLAQTGNGWMCFKDRCNSTCNQTARP 423 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---------NQFDYDKLASTIR 626 VH SNLCTEI +S EETAVCNLGSINL H + D+ KL ++ Sbjct: 424 GRTVHLSNLCTEIVEVTSPEETAVCNLGSINLGHHLRPIDGGGTQADWEVDWAKLGRSVT 483 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 AVR LD VID+N + +E A KSN R +GLG MG L L + + SP A E+A Sbjct: 484 LAVRALDRVIDLNFYPLETAAKSNARWRPVGLGTMGLHDLLLRLGLDFDSPAARELARRV 543 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E + FHA+ S +LA++ G + +F + G D G+ LPW Sbjct: 544 AEHVYFHALRTSCDLARQHGPHPAFPETRAADGQLQFDLWGVEPGE----------DLPW 593 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 D L++ V + G+RNS +A+APTATIA+I G + I+P+ NL + +SG+F VN +L Sbjct: 594 DTLRRDVASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLVKRETLSGEFIQVNRYL 653 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 ++EL++ LWDEAM + LK +GS+ I R+P+ L++ TA+E+ LI+ A+ R + Sbjct: 654 IDELRRLGLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWELPMRALIDMAAARGPF 713 Query: 867 IDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 IDQ+QSLNL+++ P +L +Y AW GLKTTYYLRSR A+ + K+T+ + K Sbjct: 714 IDQSQSLNLFVESPDLTRLSAMYFYAWKAGLKTTYYLRSRPASGIAKATVDPANAKP--- 770 Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + S + CE CQ Sbjct: 771 ------KQRSAEALACSLENPEACEACQ 792 >gi|302536806|ref|ZP_07289148.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. C] gi|302445701|gb|EFL17517.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. C] Length = 798 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 306/806 (37%), Positives = 438/806 (54%), Gaps = 45/806 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + E + L D V + + E++L ++ LI ++P Y+++ A Sbjct: 25 LLRTLTELTADLPDTDPGRVAAAALRGRSASADEAELRGLATEAAAGLISEDPAYSRLAA 84 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E F + G + L+ + +F + Sbjct: 85 RLLTLAVADEAAGQGATS----------------FAESVAVGHREGLIADRTAEFVAAHA 128 Query: 282 A-------NDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKE 332 A + L D F + GL+ L+ RY L IE PQ F +RVA GLA + Sbjct: 129 ARLDALVEHALAEGADDRFGFFGLRTLHSRYLLRHPITRQVIETPQYFMLRVACGLAEDD 188 Query: 333 TEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQEN 390 + + V Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + Sbjct: 189 SVQAVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQV 248 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA Sbjct: 249 ARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAV 308 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV +A W+LFSP +V +L Sbjct: 309 YLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVNADADWSLFSPADVPEL 368 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 DLYG EF+ AY E + + A L+ +M+ L +TG W+TFKD N Sbjct: 369 VDLYGDEFDAAYVKAEAAGLA-----KKTMPARDLYGRMMRTLAQTGQGWMTFKDASNRT 423 Query: 571 SPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 + Q VVHSSNLCTEI ++ ETAVCNLGS+NL A A+ + D+ +L T+RTA Sbjct: 424 ANQTALPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVADGEMDWARLDETVRTA 483 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 V LD V+DIN + E+A +SN R +GLG MG Q L +P+ S EA ++ + E Sbjct: 484 VTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKALSTKISE 543 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A AS +LA+ G ++ + QGV D R WD Sbjct: 544 RIMLAAYEASCDLAERSGPLPAWAETRTAQGVLHPDHY----------ETERHWPERWDA 593 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+ R+ GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN +LV Sbjct: 594 LRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVE 653 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 +LKQ +WD L+ GS+ IP ++++++ TA+EI LI+ A+ R ++D Sbjct: 654 DLKQLGVWDAQTREALRESSGSVQGFGWIPAEIRELYRTAWEIPQRGLIDMAAARTPYLD 713 Query: 869 QAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 Q+QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + ++ A P Sbjct: 714 QSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATKIARAASGAAAVPAAATPA 773 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 P + + + S + CE CQ Sbjct: 774 QLP-QALDAEALACSLENPESCEACQ 798 >gi|282861025|ref|ZP_06270090.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. ACTE] gi|282563683|gb|EFB69220.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. ACTE] Length = 803 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 300/799 (37%), Positives = 432/799 (54%), Gaps = 33/799 (4%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + L D V + + E++L + ++ LI ++P Y+++ A Sbjct: 32 LLRTLTDLTVDLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLISEDPAYSRLAA 91 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + E + + + E + H ++D + Sbjct: 92 RLLTLTIADEAAGQGAT----SFSASVAVGHREGLIA--DRTAAFVEQHAQVLD---ALV 142 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEK-EKR 338 L D F Y GL+ L+ RY L +R IE PQ F +RVA GLA E+ + Sbjct: 143 ERTLADGADDRFGYFGLRTLHSRYLLRHPHTRQVIETPQHFMLRVAAGLAEDESVRARDE 202 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++ Sbjct: 203 VAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYDRYHQVARLSKHA 262 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH Sbjct: 263 GGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLETWHA 322 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+G Sbjct: 323 DIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFSPADVPELTDLWGDA 382 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575 F+ AY E + + + A L+ +M+ L +TG W+TFKD N + Q Sbjct: 383 FDAAYRAAEARGLA-----RKTMPARELYGRMMRTLAQTGQGWMTFKDASNRTANQTAEP 437 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 VVHSSNLCTEI + ETAVCNLGS+NL A + D+++L +T+RTAV LD V Sbjct: 438 GRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGSIDWERLDATVRTAVTFLDRV 497 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +DIN + E+A SN R +GLG MG Q L +P+ SPEA ++ E I A Sbjct: 498 VDINFYPTEQAGTSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARALSTRISERIMLAAY 557 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS +LA+ G ++ + +GV D WD L+ R+ Sbjct: 558 EASCDLAERSGPLPAWSETRAARGVLHPDHYATE----------LNWPERWDALRARIAK 607 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN +LV ELK+ + Sbjct: 608 TGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEELKKLGV 667 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 WD L+ GS+ IP+D++ ++ TA+EI LI+ A+ R ++DQ+QSLNL Sbjct: 668 WDARTREALREASGSVQGFGWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLNL 727 Query: 876 YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 +L+ P+ KL +Y AW GLKTTYYLRSR AT + ++ +A + Sbjct: 728 FLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARA---ASGRTASAALPAQQAQAP 784 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + I S + CE CQ Sbjct: 785 DADAIACSLENPESCEACQ 803 >gi|254388986|ref|ZP_05004217.1| ribonucleotide-diphosphate reductase large chain [Streptomyces clavuligerus ATCC 27064] gi|294814922|ref|ZP_06773565.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] gi|326443294|ref|ZP_08218028.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces clavuligerus ATCC 27064] gi|197702704|gb|EDY48516.1| ribonucleotide-diphosphate reductase large chain [Streptomyces clavuligerus ATCC 27064] gi|218078698|emb|CAB90707.4| class Ia ribonucleotide-diphosphate reductase large subunit chain [Streptomyces clavuligerus ATCC 27064] gi|294327521|gb|EFG09164.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] Length = 810 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 305/802 (38%), Positives = 437/802 (54%), Gaps = 44/802 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + + + L D V + + + G ++L ++ LI ++P Y+++ A Sbjct: 44 LLRTLTDLTADLPDTDPGRVAAAALRGRHPGSDAAELRGLATDAAAGLIAEDPAYSRLAA 103 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L + E + F + G L+ + F Sbjct: 104 RLLTLTIGDEARSQGAVS----------------FSASVAVGHTEGLIADRTAAFVALHS 147 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + + D F Y GL+ LY RY L +E PQ F +RVA GLA +TE+ Sbjct: 148 ARLDALIDLDADDRFGYFGLRTLYSRYLLRHPITRKVVETPQHFMLRVACGLAEDDTERA 207 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L D+L I+G + A L+ Sbjct: 208 LDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYGRYHQVARLS 267 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 268 KHAGGIGLSYSRIRSRGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 327 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV + W+LFSP +V +L DL+ Sbjct: 328 WHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFSPADVPELVDLW 387 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G EF+ AY E R + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 388 GDEFDAAYRKAEAAGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDASNRTANQT 442 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VHSSNLCTEI + ETAVCNLGS+NL A + D+++L +T+RTAV L Sbjct: 443 ALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGDIDWERLDATVRTAVTFL 502 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D V+DIN + E+A +SN R +GLG MG Q L +P+ S EA ++ E I Sbjct: 503 DRVVDINFYPTEQAGRSNTKWRPVGLGAMGLQDVFFQLRLPFDSAEARALSTRIAERIML 562 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A AS +LA+ G +++ + +GV D G + + W L++R Sbjct: 563 AAYEASADLAERHGPLPAWEKTRTARGVLHPDHYG----------VEQHWPERWAALRER 612 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V T GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VNS+LV ELK+ Sbjct: 613 VATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELKR 672 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 +WD L+ GSI +PD++++++ TA+EI LI+ A+ R +IDQ+QS Sbjct: 673 LGVWDAQTREALRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAARTPYIDQSQS 732 Query: 873 LNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 LNL+++ P+ KL +Y AW GLKTTYYLRSR AT + ++ VPV Sbjct: 733 LNLFMETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIARAASGTAAAAPATVPV---- 788 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + S + CE CQ Sbjct: 789 QQVPQDAVACSLENPESCEACQ 810 >gi|297202282|ref|ZP_06919679.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sviceus ATCC 29083] gi|197710198|gb|EDY54232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sviceus ATCC 29083] Length = 796 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 305/826 (36%), Positives = 430/826 (52%), Gaps = 66/826 (7%) Query: 154 LISFNSK----RLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSES---DLETALIFS 205 + L + + L D V + + G S +L + Sbjct: 12 TTPVDEDGPGAALLRTLTALTADLPDADPGRVAAAALRGRSARGASAEMIAELRELATEA 71 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + LI ++P Y+++ AR L + E + F + G + Sbjct: 72 AAGLISEDPAYSRLAARLLTVSIAAEAASQGVTS----------------FTGSVAVGHR 115 Query: 266 ARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAF 320 L+ + +F L + E D F Y GL+ LY RY L IE PQ F Sbjct: 116 EGLIADRTAEFVRVHAERLDALVDTEADDRFGYFGLRTLYSRYLLRHPITRKVIETPQHF 175 Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +RVA GLA Y L+S ++ S+PTLFNSGTRHPQ+SSC+L Sbjct: 176 MLRVASGLADDTVLDSETGAHALDEVAALYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYL 235 Query: 374 TTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 P D+L I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + Sbjct: 236 LDSPKDELDSIYDRYHQVANLSKHAGGIGISYSRIRSRGSLIRGTNGHSNGIVPFLKTLD 295 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + AVNQGG+RKGA YLETWH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+R Sbjct: 296 ASVAAVNQGGRRKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRR 355 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +A W+LFSP +V +L DL+G+EF+ AY E E R I A L+ +M+ Sbjct: 356 VNADAEWSLFSPADVPELVDLWGEEFDAAYRKAEA-----EGLARRTIPARDLYGRMMRT 410 Query: 553 LFETGHPWITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 L +TG+ W+TFKD N + Q VHSSNLCTEI + ETAVCNLGS+NL A Sbjct: 411 LAQTGNGWMTFKDAANRTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAF 470 Query: 611 FANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D+++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q Sbjct: 471 VDTTSGDIDWERLDATVRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFF 530 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L +P+ SPEA ++ E I A AS +LA+ G +++ + QGV D Sbjct: 531 KLRLPFDSPEARALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTAQGVLHPDHYAT 590 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + W L++R+ G+RNS +AIAPTATIA+I GV + I+P N Sbjct: 591 ----------DLAWPERWAALRERMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSN 640 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L+ + +SG+F VNS+LV ELK+ +WD L+ +GS+ IP+D++ ++ TA Sbjct: 641 LFKRETLSGEFLQVNSYLVAELKKLGVWDARTREALREANGSVQGFAWIPEDVRALYRTA 700 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 +EI LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLRSR A Sbjct: 701 WEIPQRGLIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPA 760 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 T + A + S + CE CQ Sbjct: 761 TRI----------ARAAQATVPVQQPAPEDAVACSLENPESCEACQ 796 >gi|254384640|ref|ZP_04999979.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp. Mg1] gi|194343524|gb|EDX24490.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp. Mg1] Length = 797 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 301/805 (37%), Positives = 437/805 (54%), Gaps = 47/805 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + E + L D V + + E++L + ++ LI ++P Y+++ A Sbjct: 28 LLRTLTELTADLPDTDPGRVAAAALRGRSAAADEAELRSLATEAAAGLISEDPAYSRLAA 87 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L +R E + + + E + ++ L Sbjct: 88 RLLTLAVRDEAAGQGAT----SFSASVAVGHREGLIA---------DRTAAFVEAHAARL 134 Query: 282 ANDLKYER----DFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK 335 ++Y D F + GL+ L+ RY L +E PQ F +RVA GLA E+ + Sbjct: 135 DALVEYTLAEGADDRFGFFGLRTLHSRYLLRHPITRQVVETPQHFMLRVACGLAADESVQ 194 Query: 336 EKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAML 393 V Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L Sbjct: 195 AVEEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPLDELDSIYDRYHQVARL 254 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLE Sbjct: 255 SKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLE 314 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 TWH D+EEFL+LR NTG+D+RRTH++N A+W+PD FM+RV +A W+LFSP +V +L DL Sbjct: 315 TWHADIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFMRRVNADADWSLFSPADVPELVDL 374 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 +G +F+ AY E + + A L+ +M+ L +TG W+TFKD N + Q Sbjct: 375 WGDDFDAAYRKAEADGLA-----RKTMPARDLYGRMMRTLAQTGQGWMTFKDASNRTANQ 429 Query: 574 Q--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYDKLASTIRTAV 629 VVHSSNLCTEI ++ ETAVCNLGS+NL A + D+++L T+RTAV Sbjct: 430 TAEPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVLTETGEIDWERLDETVRTAV 489 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPEA ++ + E Sbjct: 490 TFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLKLPFDSPEAKALSTKLSER 549 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A AS +LA+ G +++ + +GV D WD L Sbjct: 550 IMLAAYEASCDLAERSGPLPAWEQTRTARGVLHPDHY----------DTELNWPERWDAL 599 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + RV GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN +LV E Sbjct: 600 RARVAESGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEE 659 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 LK+ +WD L+ GS+ IP ++++++ TA+EI LI+ A+ R ++DQ Sbjct: 660 LKKLGVWDAQSREALREASGSVQGFGWIPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQ 719 Query: 870 AQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 +QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + A PV Sbjct: 720 SQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATKI-------ARAAQAATPVA 772 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 P + + + S + CE CQ Sbjct: 773 LPQAVVDAEALACSLENPESCEACQ 797 >gi|302558497|ref|ZP_07310839.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces griseoflavus Tu4000] gi|302476115|gb|EFL39208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces griseoflavus Tu4000] Length = 796 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 300/804 (37%), Positives = 429/804 (53%), Gaps = 51/804 (6%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + E + L D V + + E++L ++ LI ++P Y+++ A Sbjct: 33 LLRTLTELTADLPDADPGRVAAAALRGRSARADEAELRELATEAAAGLISEDPAYSRLAA 92 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DL 278 R L +R E + F + G + L+ + F Sbjct: 93 RLLTIGIRAEAASQGVTS----------------FTGSVATGHREGLIADRTAAFVRLHA 136 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK- 335 L + D F Y GL+ L+ RY L +E PQ F +RVA GLA + + Sbjct: 137 ERLDALVDTRADDRFGYFGLRTLHSRYLLRHPVTRKVVETPQHFLLRVAAGLAEDDGARS 196 Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT-VPDDLYGIFGALQENAMLA 394 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L D+L I+ + A L+ Sbjct: 197 VDEVAALYGLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPQDELDSIYDRYHQVARLS 256 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLET Sbjct: 257 KHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQGGRRKGAAAVYLET 316 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 WH D+EEFL+LR NTG+D RRTH++N A+W+PD FM+RV +A W+LFSP +V L DL+ Sbjct: 317 WHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFSPADVPGLVDLW 376 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 G+EF+ AY E Q R + A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 377 GEEFDAAYRAAEAQGLA-----RRTLPARELYGRMMRTLAQTGNGWMTFKDTANRTANQT 431 Query: 575 --HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVR 630 VVHSSNLCTEI + ETAVCNLGS+NL A D+++L T+RTAV Sbjct: 432 AEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQAAGDLDWERLDETVRTAVT 491 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD V+DIN + E+A +SN R +GLG MG Q L L +P+ SPEA ++ E I Sbjct: 492 FLDRVVDINYYPTEQAGRSNARWRPVGLGAMGLQDVLFRLRLPFDSPEAKALSTRIAERI 551 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A S +LA+ G +++ + +GV D T W L+ Sbjct: 552 MLAAYETSADLAERSGPLPAWEKTRTARGVLHPDHY----------DTELTWPERWAALR 601 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 R+ +GMRNS +AIAPTATIA+I G + I+P NL+ + +SG+F VNS+LV +L Sbjct: 602 ARIAAVGMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQVNSYLVEDL 661 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ +WD L+ GS+ + IP+D+++++ TA+EI LI+ A+ R ++DQA Sbjct: 662 KRLGVWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQA 721 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR A + A Sbjct: 722 QSLNLFLETPTIGKLSSMYVHAWKQGLKTTYYLRSRPA---------TRIARAAARTTVP 772 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 + + S + CE CQ Sbjct: 773 VQAGPDPEAVACSLENPESCEACQ 796 >gi|257792031|ref|YP_003182637.1| ribonucleotide-diphosphate reductase subunit alpha [Eggerthella lenta DSM 2243] gi|257475928|gb|ACV56248.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella lenta DSM 2243] Length = 845 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 272/915 (29%), Positives = 426/915 (46%), Gaps = 117/915 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87 +Q+ KRNG V +++ KI RA+ AF +V + L + + Sbjct: 1 MQISKRNGTVEAYEAGKIKRAMGAAFASVGKVL------DDEEADRLIARIERAMASAEQ 54 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 V +ED+QD VE +LM++ H++ + Y+LYRE+R+ R A+ + P P L Sbjct: 55 GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRVARERLCAQLPSVPALPG 114 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ++ + L +S+K ++ L L+ ++ Sbjct: 115 VLASVQKEFPGEE----------YELAHLSAKFQSFAK-----PDAADGQLLAMLVKAAV 159 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L +E P + + AR L+ + R + + + + ++ L EEG+ Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETFAQKVAFL--------TEEGLYG 211 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 + + +L A + R+ F Y GLQ+L DRY + G+ +E PQ F+ +A Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271 Query: 326 MGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 + LA++E E+ FY++LS+ +TPTL N+ QLSSCF+ TVPD L GI Sbjct: 272 LHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++KY GG+G + VR G+ I G +G + GVI ++++ANDTAVAV+Q G Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F ++ N W L Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG+E+ Y A + R I + R ++ ET Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARIKK----RAIPIKDVIRLIIKSAVET 507 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596 G P+ +D N +P +H G+++ SNLCTEI N + E Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567 Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNL S++L + D +LA +AVR LDNVID+N + A+ +N + Sbjct: 568 PGAFVVCNLASLSLGHI---DMDDPHELAHVTESAVRALDNVIDLNFFPVPYAEINNRQY 624 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G+ L I + S E + A+ + + A+ AS +A+E+GAY F+G Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G + D R W EL + V G+RN +A+APT++ + Sbjct: 685 SGWQTGEYFRD--------RGLTDGR------WAELARDVAEHGLRNGYLLAVAPTSSTS 730 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP +++ +G V EL W Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + A ID W + + RQ+ IDQAQS+NLY+ +E + +++ +Y A Sbjct: 770 ----------YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 820 WEEGVKTIYYVRSKS 834 >gi|320008646|gb|ADW03496.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces flavogriseus ATCC 33331] Length = 797 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 305/816 (37%), Positives = 436/816 (53%), Gaps = 47/816 (5%) Query: 152 GTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE 211 G L + + L D V + + E++L + ++ LI Sbjct: 16 GRTTDAPGTALLRTLTGLTADLPDTDPGRVAAAALRGRNARSDEAELRSLATEAAAGLIS 75 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 ++P+Y+++ AR L + E F + G + L+ + Sbjct: 76 EDPSYSRLAARLLTRAVADEAAGQGAVS----------------FSASVAVGHREGLIAD 119 Query: 272 SMMDFD------LVYL-ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322 +F L L L D F Y GL+ L+ RY L E PQ F + Sbjct: 120 RTAEFVTLHAAALDALVDRALADGADDRFGYFGLRTLHSRYLLRHPLTRQVTETPQHFML 179 Query: 323 RVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDL 380 RVA GLA +E+ + Y L++ ++ S+PTLFNSGTRHPQ+SSC+L P D+L Sbjct: 180 RVAAGLAEDTSERALEEVAALYGLMNRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPMDEL 239 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I+ + A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQ Sbjct: 240 DSIYDRYHQVARLSKHAGGIGLSYSRIRARGSLIRGTNGHSNGIVPFLKTLDASVAAVNQ 299 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG+RKGA YLETWH D+EEFL+LR NTG+D+RRTH++N A+WIPD FM+RV + W+ Sbjct: 300 GGRRKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTQWS 359 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP + +L DL+G EF+ AY E + R + A L+ +M+ L +TG W Sbjct: 360 LFSPADAPELVDLWGDEFDAAYRAAEA-----KGLARRTLPARELYGRMMRTLAQTGQGW 414 Query: 561 ITFKDPCNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 +TFKD N + Q VVHSSNLCTEI + ETAVCNLGS+NL A A D+ Sbjct: 415 MTFKDASNRTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVAEGTIDW 474 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L +T+RTAV LD V+DIN + E+A +SN R +GLG MG Q L +P+ SPE Sbjct: 475 ERLDATVRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPE 534 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A ++ + E I A AS +LA+ G ++ + +GV D Sbjct: 535 ARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHY----------DT 584 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 WD L+ RV GMRNS +AIAPTATIA+I GV + I+P NL+ + +SG+ Sbjct: 585 ELHWPERWDALRARVARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGE 644 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F VN++LV+ELK+ +WD L+ GS+ IP+D++ ++ TA+EI LI+ Sbjct: 645 FLQVNAYLVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLID 704 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 A+ R ++DQ+QSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT + Sbjct: 705 MAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKTTYYLRSRPATRIA---RAA 761 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 A V S+ + + S + CE CQ Sbjct: 762 SGQAPAAATVPVQASAPDADALACSLENPESCEACQ 797 >gi|269860694|ref|XP_002650066.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] gi|220066497|gb|EED43976.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] Length = 778 Score = 572 bits (1474), Expect = e-160, Method: Composition-based stats. Identities = 250/790 (31%), Positives = 415/790 (52%), Gaps = 43/790 (5%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREV 232 ++ ++ + + + ++ +++ + T+I P+Y K+ A L++ L Sbjct: 21 IEGLNLPLFFDKVSSGLALDMTPTEMTKYCSEIAATMITIHPSYNKLAAIILIKHLHENT 80 Query: 233 LTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA 292 T K +Y + ++ + +++ ++ + +KYERD+ Sbjct: 81 FNTFSDKM----------MYIQQEKNIFDDHIMELIIN------NMNVYNSIVKYERDYN 124 Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 F+Y L L Y + +N + IE PQ +MRVA+ L + + + Y+LLS ++ Sbjct: 125 FDYFALISLQKSYQIQVNNTVIERPQDIYMRVAIELHGDDFNNVQ---KTYDLLSQQYYT 181 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL+NS + QL+SCFL + D + GIF ++E A+ +K SGG+G + +R Sbjct: 182 HATPTLYNSCFKKNQLASCFLLGMKSDTIAGIFDTIKEAAIYSKLSGGVGLHISNLRCDK 241 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC-AYLETWHIDVEEFLDLRKNTG 470 + + T G S+G+IP +K+ ND+ +NQGG R+ A C YLE WH D+ +FLDLRKNTG Sbjct: 242 SQLVTTGGYSKGIIPIVKLINDSMKYINQGGARRCATCAFYLEPWHKDILKFLDLRKNTG 301 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + R D TA WI DLFM+RV +N W+LF P+ L D++G +F Y YE + Sbjct: 302 IEEERARDSFTALWINDLFMERVEKNEMWSLFDPNIAKGLQDVWGDQFNKLYAYYEETIE 361 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 R I A LW++++ ETG P++ +KD CN S Q ++G + SSNLC EI Sbjct: 362 RT------TIPAQKLWKEIICSQIETGTPYMCYKDTCNRYSNQNNIGTIKSSNLCAEIIQ 415 Query: 591 NSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 S S+ TAVCNL SI L + N FD+ +L + ++ ++ +ID + E Sbjct: 416 YSDSDITAVCNLASICLPKYVKINSTTSNYYFDFQELYTVVKIVTYNMNKMIDKSAFPTE 475 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 ++KK N R IG+G+ G L+ + S EA ++ E + F A+ AS ELAQ+ Sbjct: 476 ESKKGNSLFRPIGIGVQGLADVFFLMGYSFESKEARDLNKMIFETLYFGALEASCELAQK 535 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G YS ++GS++ QG+F + +E+ + W+EL+ ++KT G+RNS + Sbjct: 536 HGPYSYYQGSMYSQGIFHFEKFCEGRINVNEIL---SGMWNWEELRIKMKTYGVRNSLTL 592 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 A+ PTA+ + ICG S+ I+P N++ + +G+F +VN +L+ +L + LW+ + + Sbjct: 593 ALMPTASTSQICGNSECIEPIQSNIFTRRTFAGEFQIVNKYLMKDLIKLGLWNNEIKQLI 652 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 ++GSI I IP +K ++ T +E+ +++ A RQ ++DQ+QSLNL++ EP+ Sbjct: 653 IEYEGSIQKIPIIPQHVKDLYKTVWELKMKSVLDMAIDRQAFVDQSQSLNLFVKEPTYGI 712 Query: 885 LDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 L ++ W LKT YYLR+ K T+ + + +S S Sbjct: 713 LSSMHFYGWKNKLKTGMYYLRTCPLAKAIKFTVDKE------LILKTLSSFKDSENDKKL 766 Query: 944 CTSDTECEVC 953 + CE C Sbjct: 767 NKENDYCEGC 776 >gi|313903042|ref|ZP_07836437.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermaerobacter subterraneus DSM 13965] gi|313466766|gb|EFR62285.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermaerobacter subterraneus DSM 13965] Length = 930 Score = 571 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 313/752 (41%), Positives = 451/752 (59%), Gaps = 20/752 (2%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 LE L+ ++ + ++P + +V R L +L R+VL P++ Y F Sbjct: 83 LEELLVQAATQNLHRDPEFERVAVRARLRQLYRQVLGEPVPGPER---------YRAAFP 133 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 YI GV L E ++ FDL LA L+ ERD + ++GL L DRY + SR +E Sbjct: 134 AYIRRGVACGALDERLLAFDLDELAGALRPERDESLPFIGLVTLADRYLVREPESRRLLE 193 Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ FMRVAMGLAL E + A+ FY +S+F ++ STPTLFN+GT H QLSSC+L Sbjct: 194 TPQYLFMRVAMGLALAEEPARRVHWALRFYEFMSTFRYLPSTPTLFNAGTPHHQLSSCYL 253 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + I A + LAKY+GG+G T +R G+ + G NG+S GVIPF+ + Sbjct: 254 ADVHDSMDHILEAAGDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFIHYYDA 313 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 AVNQGG+R+G + YLE WH+++E FLDL++N+GD R H +NTA WIPD F++RV Sbjct: 314 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 373 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLT 551 W LF P V +L + +G F AY RQA+ GE+ + ++++ A L+R++L Sbjct: 374 EAGEPWYLFDPAYVPELPERFGAAFRDAYAARIRQAEAGELPARAWKRVDARQLFREILA 433 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 L ET HPW+ FKD N+RS GV+HSSNLCTEI L ++++E AVCNL S+NL H Sbjct: 434 TLQETSHPWLVFKDAGNVRSLLP--GVIHSSNLCTEIFLPTTADEVAVCNLASVNLARHL 491 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D++ LA+T+ A+R LDNVID+N + IEKA++SN HR +GLG+MGF A++ L Sbjct: 492 GPAGIDWEALAATVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 551 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + YA PEA ++AD +EFIS+HAI AS LA ERG++ SF S W +G P+D++ L E Sbjct: 552 LGYADPEAADLADRVLEFISYHAILASHRLAGERGSFPSFAESGWARGKVPLDTLADLEE 611 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++R++RL W+ ++ RV+ GMRN +A+APTATI+ I G + S+DP Y N++ Sbjct: 612 ERGRPVTVDRSARLDWEGVRARVRQ-GMRNGAVLAVAPTATISLIAGTTPSLDPPYSNVF 670 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG F VN LV EL+QR LW E + + G + I +P D++ + TA++ Sbjct: 671 SRQTLSGKFLEVNRVLVEELRQRGLW-EQVRDRIVEERGDLQPIAELPADIRHRYPTAYQ 729 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + P +E A+R QKW+D S NL+L + ++ +YR+AW GLK+TYYL Sbjct: 730 VPPEAYLEIAARAQKWVDMGISRNLFLADRDLGAMERVYREAWRRGLKSTYYLFMAPRMY 789 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 E ST++ + D + S Sbjct: 790 AEPSTVRVNKARRKLRWNLDEPAPAGSSAGAR 821 >gi|311898298|dbj|BAJ30706.1| putative ribonucleoside-diphosphate reductase subunit alpha [Kitasatospora setae KM-6054] Length = 804 Score = 571 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 305/807 (37%), Positives = 442/807 (54%), Gaps = 41/807 (5%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L ++ + + L V V + + + G ++L + ++ ++I ++P Y+K+ A Sbjct: 25 LLRLLTDRSTDLPQVDPGHVAAAALRGRHAGSDFAELRGLAVEAAASMIAEDPQYSKLAA 84 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L ++R E T + + + E + + Sbjct: 85 RLLALEIRDEAATQ----QVTSFSSSVAVGHAEGL---------IGDATAAFVAAHADLF 131 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLA-LKETEKEKR 338 + + D FEY GL+ + RY L +E PQ F +RVA GLA E + Sbjct: 132 DSLVDEAGDDRFEYFGLRTVQSRYLLRHPITRKVVETPQHFLLRVAAGLAVGTSEESVRE 191 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYS 397 E Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K++ Sbjct: 192 VAELYTLMSRLEYLTSSPTLFNSGTRHPQMSSCYLLDSPLDNLDSIYNRYAQIARLSKHA 251 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G ++ +R G+ I GTNG+S G++PFL+ + + AVNQGG+RKGA C YLETWH Sbjct: 252 GGIGLSYSRIRSRGSLIRGTNGQSNGIVPFLRTLDSSVAAVNQGGRRKGAACVYLETWHA 311 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EEFL+LR NTG++ RRTH++N A+WIPD FM+RV NA W+LFSP +V +L DL+G + Sbjct: 312 DIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFSPADVPELVDLWGAD 371 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ--H 575 F+ AY E K R I A L+ +M+ L +TG+ W+TFKD N + Q Sbjct: 372 FDEAYVKAELA-----GKAVRTIPAQTLYARMMRTLAQTGNGWMTFKDASNRAANQTALP 426 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--------NQFDYDKLASTIRT 627 VHSSNLCTEI + ETAVCNLGS+NL AH A N D+D+L +T+RT Sbjct: 427 GRTVHSSNLCTEILEVTDDSETAVCNLGSVNLGAHVAPGATAADLLNAMDWDRLDATVRT 486 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AV LD VIDIN + +A SN R +GLG+MG Q L I + S EAV ++ Sbjct: 487 AVTFLDRVIDINFYPTTEAGTSNSRWRPVGLGVMGLQDVFFQLRIDFDSAEAVALSTLIA 546 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 E I A S +LA+ G + ++ + +G +D G A N WD Sbjct: 547 ERIMLTAYERSADLAERFGRHEAYGETRAARGQLHVDHFG---------AANPQWTERWD 597 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ R+ +G+RNS +AIAPTATIA+I GV + I+P NL+ + +SG+F VN +LV Sbjct: 598 ALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNPYLV 657 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 ELK+ +WD+ L+ +GSI +P +++ ++ TA+E+ LI+ A+ RQ +I Sbjct: 658 RELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRSLYRTAWELPQRALIDLAAARQPYI 717 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 DQ+QSLNL++ P+ KL +Y AW +GLKTTYYLRSR AT + ++ Sbjct: 718 DQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKTTYYLRSRPATRIAQAAPGAARTAAPVPV 777 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 T S I S + CE CQ Sbjct: 778 QTPTLSQAEQDAIACSLENPESCEACQ 804 >gi|302521844|ref|ZP_07274186.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB78] gi|302430739|gb|EFL02555.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SPB78] Length = 790 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 302/810 (37%), Positives = 434/810 (53%), Gaps = 43/810 (5%) Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 L + E + L D V + + E++L ++ LI ++ Sbjct: 15 EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74 Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P Y+++ AR L + E F + G + L+ + Sbjct: 75 PAYSRLAARLLALAIVEEAAGQGAS----------------GFAASVAVGHREGLIGDRT 118 Query: 274 MDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGL 328 +F L + D F Y GL+ LY RY L +E PQ F +RVA GL Sbjct: 119 AEFVAAHAARLDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGL 178 Query: 329 ALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386 A ++ Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKG Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV +A W+LFSP + Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPAD 358 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V +L DL+G+EFE AY E + + I A L+ +M+ L +TG W+TFKD Sbjct: 359 VPELTDLWGEEFEAAYRAAEA-----KGLARKTIPARELYGRMMRTLAQTGQGWMTFKDH 413 Query: 567 CNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 N + Q VVHSSNLCTEI + ETAVCNLGSINL A N D+++L T Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDET 473 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +RTAV LD V+DIN + ++A SN R +GLG MG Q L +P+ S EA ++ Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E I A AS +LA++ G +++ + +GV D + RT Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPE 583 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ R+ GMRNS +AIAPTATIA+I GV + ++P NL+ + +SG+F VN Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK+ +WD L+ +GS+ IP++++ ++ TA+E+ LI+ A+ R Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++DQ+QSLNL+++ P+ KL +Y AW GLKTTYYLRSR AT + Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGSPAAE 760 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 A P+ S + I S + CE CQ Sbjct: 761 AAPIPVQQSVPDAEAIACSLENPESCEACQ 790 >gi|291303012|ref|YP_003514290.1| ribonucleoside-diphosphate reductase subunit alpha [Stackebrandtia nassauensis DSM 44728] gi|290572232|gb|ADD45197.1| ribonucleoside-diphosphate reductase, alpha subunit [Stackebrandtia nassauensis DSM 44728] Length = 771 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 311/804 (38%), Positives = 448/804 (55%), Gaps = 53/804 (6%) Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAK 218 + +V SGL DV ++ V + G +E++L + + +L+ EP Y++ Sbjct: 13 IDHVVQVVRRLASGLADVEAETVSGPVVAGNWPGATEAELRLRAVEVAASLVATEPGYSR 72 Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-- 276 + AR L E + EV + M Y A L+ + + +F Sbjct: 73 LAARLLSEHIGDEVRLSDVGC----FSEAMSAGYR------------AGLISDGLWEFVS 116 Query: 277 -DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKET 333 + L + D FEY G++ +YDRY L +R+ E PQ FFMRVA GL+ Sbjct: 117 SNAPKLDALVDDGADDRFEYFGIRTVYDRYLLRHPETRLVLETPQHFFMRVACGLSET-- 174 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAM 392 E Y LLS+ ++ S+PTLFN+GTR QLSSCFL P D+L I+ + A Sbjct: 175 --VSDVTELYGLLSTLSYLPSSPTLFNAGTRRSQLSSCFLLDSPRDELESIYDRYSQAAR 232 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+KY+GG+G W+ +R G+ I GTNG S G++P+L+ + + AVNQGG+RKGA C YL Sbjct: 233 LSKYAGGIGMAWSRIRSRGSLIRGTNGHSNGIVPWLRTLDSSVAAVNQGGRRKGAACVYL 292 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 TWH D+EEFL+LR NTG + RRTH++N ANWIPD FM+RV + W+LF P +V +L D Sbjct: 293 ATWHADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFDPKDVPELVD 352 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 L+G+EFE AY + E K R +SA L+ +M+ L +TG+ W+TF D N Sbjct: 353 LWGEEFEKAYRDAEAA-----GKAARVVSARDLYGRMMRTLAQTGNGWMTFADISNRTCN 407 Query: 573 QQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 Q VVH SNLCTEI +S ETAVCNLGS+NL AH + FD+++LA ++RTAV Sbjct: 408 QTAVPGNVVHLSNLCTEILEVTSDAETAVCNLGSVNLAAHCVDGGFDFERLARSVRTAVT 467 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD ID+ + +A+K+N R IGLGLMG L +P+ S EA E+++ E I Sbjct: 468 FLDRSIDLTYYPTAEAEKANRRWRPIGLGLMGMADVFFKLRMPFDSAEARELSNRISETI 527 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 + A S +LA GA+ S+ + +GV +D T W ++ Sbjct: 528 ALAAYETSADLAARLGAHPSYDDTRAARGVLHVDHF---------ADAAVTDPDAWQRVR 578 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + V G+RNS +AIAPTATIA I G S+ +P N++ + +SG+F VN +L+ +L Sbjct: 579 ELVAANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFIQVNKYLIADL 638 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 KQR LW+E + + +GSI +I IP +L++++ TA+E+ LI+ A+ R +IDQ+ Sbjct: 639 KQRGLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLAAGRTPFIDQS 698 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 QSLNL++ P+ KL +Y AW GLKTTYYLRSR AT + ++T+ + Sbjct: 699 QSLNLFMAAPTIGKLSSMYAYAWRSGLKTTYYLRSRPATRINQTTV-----------ASA 747 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 P + I S + CE CQ Sbjct: 748 PEVDAEAEAIACSLENPETCEACQ 771 >gi|253567023|ref|ZP_04844474.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_2_5] gi|251944147|gb|EES84656.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_2_5] Length = 839 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 274/916 (29%), Positives = 435/916 (47%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F + + + +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + ++ + ++ Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 D T ++ L C + S+ ALI + Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ ++ + +++ L EEG+ Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323 + + ++ A + +RD F Y GL +L RY + E Q ++ Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E E+ +FY+LLS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMVKEDLNQPWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + + R IS + R +L E Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N ++ E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D +++ + T VR LDNVID+N + + A+ +N Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Y F+ Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W+ L RV GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAARVAENGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L + W Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ +Y Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTVYYVRSKS 828 >gi|318060205|ref|ZP_07978928.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SA3_actG] gi|318077112|ref|ZP_07984444.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. SA3_actF] Length = 767 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 301/800 (37%), Positives = 433/800 (54%), Gaps = 43/800 (5%) Query: 164 MIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARF 223 + E + L D V + + E++L ++ LI ++P Y+++ AR Sbjct: 2 RTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISEDPAYSRLAARL 61 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVY 280 L + E F + G + L+ + +F Sbjct: 62 LALAIVEEAAGQGAS----------------GFAASVAVGHREGLIGDRTAEFVAAHAAR 105 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEK-EK 337 L + D F Y GL+ LY RY L +E PQ F +RVA GLA ++ Sbjct: 106 LDALIDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGLAADDSLPAVD 165 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKY 396 Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ + A L+K+ Sbjct: 166 EVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYERYLQVARLSKH 225 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 +GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKGA YLETWH Sbjct: 226 AGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKGAAAVYLETWH 285 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV +A W+LFSP +V +L DL+G+ Sbjct: 286 SDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPADVPELTDLWGE 345 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ-- 574 EFE AY E + + I A L+ +M+ L +TG W+TFKD N + Q Sbjct: 346 EFEAAYRAAEA-----KGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSNRTANQTAE 400 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 VVHSSNLCTEI + ETAVCNLGSINL A N D+++L T+RTAV LD Sbjct: 401 PGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDETVRTAVTFLDR 460 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 V+DIN + ++A SN R +GLG MG Q L +P+ S EA ++ E I A Sbjct: 461 VVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAA 520 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 AS +LA++ G +++ + +GV D + RT W+ L+ R+ Sbjct: 521 YEASADLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPERWEALRARIA 570 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 GMRNS +AIAPTATIA+I GV + ++P NL+ + +SG+F VN +LV +LK+ Sbjct: 571 RSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLG 630 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +WD L+ +GS+ IP++++ ++ TA+E+ LI+ A+ R ++DQ+QSLN Sbjct: 631 VWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLN 690 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 L+++ P+ KL +Y AW GLKTTYYLRSR AT + A P+ S Sbjct: 691 LFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGSPAAEAAPIPVQQSV 747 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + I S + CE CQ Sbjct: 748 PDAEAIACSLENPESCEACQ 767 >gi|333024514|ref|ZP_08452578.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. Tu6071] gi|332744366|gb|EGJ74807.1| putative ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces sp. Tu6071] Length = 790 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 303/810 (37%), Positives = 435/810 (53%), Gaps = 43/810 (5%) Query: 154 LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 L + E + L D V + + E++L ++ LI ++ Sbjct: 15 EQDLPGTALLRTLTELTADLPDTDPGRVAAAALRGRSAHADEAELRELATEAAAGLISED 74 Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P Y+++ AR L + E F + G + L+ + Sbjct: 75 PAYSRLAARLLALAIVEEAAGQGAS----------------GFAASVAVGHREGLIGDRT 118 Query: 274 MDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGL 328 +F L + D F Y GL+ LY RY L +E PQ F +RVA GL Sbjct: 119 AEFVAAHAARLDALVDTGGDDRFGYFGLRTLYSRYLLRHPITRKVVETPQYFLLRVAAGL 178 Query: 329 ALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGA 386 A ++ Y L+S ++ S+PTLFNSGTRHPQ+SSC+L P D+L I+ Sbjct: 179 AADDSLPAVDEVASLYRLMSRLDYLPSSPTLFNSGTRHPQMSSCYLLDSPKDELDSIYER 238 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A L+K++GG+G ++ +R G+ I GTNG S G++PFLK + + AVNQGG+RKG Sbjct: 239 YLQVARLSKHAGGIGIAYSRIRSRGSLIRGTNGHSNGIVPFLKTLDSSVAAVNQGGRRKG 298 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A YLETWH D+EEFL+LR NTG+D+RRTH +N A+WIPD FM+RV +A W+LFSP + Sbjct: 299 AAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFSPAD 358 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 V +L DL+G+EFE AY E + + I A L+ +M+ L +TG W+TFKD Sbjct: 359 VPELTDLWGEEFEAAYRAAEA-----KGLARKTIPARELYGRMMRTLAQTGQGWMTFKDH 413 Query: 567 CNIRSPQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 N + Q VVHSSNLCTEI + ETAVCNLGSINL A N D+++L T Sbjct: 414 SNRTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVDNGTIDWERLDET 473 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +RTAV LD V+DIN + ++A SN R +GLG MG Q L +P+ S EA ++ Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E I A ASV+LA++ G +++ + +GV D + RT Sbjct: 534 RIAERIMLAAYEASVDLAEKHGPVPAWEKTRTARGVLHPDHY----------DVERTWPE 583 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W+ L+ R+ GMRNS +AIAPTATIA+I GV + ++P NL+ + +SG+F VN Sbjct: 584 RWEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNG 643 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +LV +LK+ +WD L+ +GS+ IP++++ ++ TA+E+ LI+ A+ R Sbjct: 644 YLVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERT 703 Query: 865 KWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++DQ+QSLNL+++ P+ KL +Y AW GLKTTYYLRSR AT + Sbjct: 704 AFLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKTTYYLRSRPATRIA---RAAGAPAAE 760 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 A P+ S + I S + CE CQ Sbjct: 761 AAPIPVQQSVPDAEAIACSLENPESCEACQ 790 >gi|265764335|ref|ZP_06092903.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides sp. 2_1_16] gi|263256943|gb|EEZ28289.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides sp. 2_1_16] Length = 839 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 272/916 (29%), Positives = 434/916 (47%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F + + + +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + ++ + ++ Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 D T ++ L C + S+ ALI + Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ ++ + +++ L EEG+ Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323 + + ++ A + +RD F Y GL +L RY + E Q ++ Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E E+ +FY+LLS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K + N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + + R IS + R +L E Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N ++ E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D +++ + T VR LDNVID+N + + A+ +N Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Y F+ Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASTDLAKEKGRYEYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W+ L +V GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L + W Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ +Y Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTVYYVRSKS 828 >gi|53713985|ref|YP_099977.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis YCH46] gi|60682186|ref|YP_212330.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis NCTC 9343] gi|52216850|dbj|BAD49443.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides fragilis YCH46] gi|60493620|emb|CAH08409.1| putative ribonucleoside-diphosphate reductase alpha chain [Bacteroides fragilis NCTC 9343] Length = 839 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 272/916 (29%), Positives = 434/916 (47%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F + + + +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + ++ + ++ Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 D T ++ L C + S+ ALI + Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ ++ + +++ L EEG+ Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323 + + ++ A + +RD F Y GL +L RY + E Q ++ Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E E+ +FY+LLS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K + N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + + R IS + R +L E Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N ++ E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D +++ + T VR LDNVID+N + + A+ +N Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Y F+ Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W+ L +V GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L + W Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ +Y Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTVYYVRSKS 828 >gi|15290502|gb|AAK92209.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides fragilis 638R] gi|301163664|emb|CBW23218.1| putative ribonucleoside-diphosphate reductase alpha chain [Bacteroides fragilis 638R] Length = 839 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 271/916 (29%), Positives = 434/916 (47%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F + + + +II ++ E+ + K Sbjct: 1 MEITKRNGTTEPYDREKIAVAIRKSFASTGQEVS------NEIIYSVVEEVENFV---GK 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD+VE SLM+ G + + Y+LYR +R++ R A + ++ + ++ Sbjct: 52 DTANRSVEQIQDKVEQSLMEHGFYAEAKNYILYRWQRTERRKALNSIINELGDGTVMDVL 111 Query: 149 M---DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 D T ++ L C + S+ ALI + Sbjct: 112 KEIQKDFTTHEYSLVVLYEKFSGFCK-------------------QEMPHSERLAALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ ++ + +++ L EEG+ Sbjct: 153 AVELTTQEAPDWEFIAARLLNFQLSKKLEKQAASAGIRSFYDKLRYL--------TEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMR 323 + + ++ A + +RD F Y GL +L RY + E Q ++ Sbjct: 205 YGSYILAAYSQQEIEEAAGFICPDRDKLFNYSGLDLLVKRYLIRTRLHEPAESVQEMYLG 264 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E E+ +FY+LLS +TPTL N+ + QLSSCF+ T+PD L G Sbjct: 265 IALHLAMPEQKERMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSSCFIDTIPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K + N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPSVCYPDLFWKMAKEDLNQPWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + + R IS + R +L E Sbjct: 445 LFCPNEIMTIKGYCLEDYYGEEWEKRYHDCVNDTRLSK----RSISIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N ++ E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMAAIETVSTEIRTEEGDTVVVKTV 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D +++ + T VR LDNVID+N + + A+ +N Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEEQIKEKVSTVVRALDNVIDLNFYPLPFAQITNQR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + +I + S E + D E I++ AI AS +LA+E+G Y F+ Sbjct: 618 YRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKGRYEYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W+ L +V GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFGKRGYTSPEWNRLAAKVAENGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L + W Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAP----ALSDKTFW---------------- 763 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A+ +D W I +A RQ IDQ+QSLNLY+ +E + +++ +Y Sbjct: 764 -----------LYKDAYTLDQKWSIRAAGTRQLHIDQSQSLNLYITNEFTMRQVLDLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTVYYVRSKS 828 >gi|288800287|ref|ZP_06405745.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332500|gb|EFC70980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 839 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 280/916 (30%), Positives = 444/916 (48%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRNG V +D +KI+ AI K+F +V + +I + + + H+ Sbjct: 1 MEIIKRNGNVEQYDKNKIAVAIQKSFASVGTEVNIV------LINEMVDAVERFIETHSD 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS---KSDAPIAPKL 145 + ++E IQDQVE +LMQ+G + + Y+L+R +R++ R A ++ D + P L Sbjct: 55 ---MRNVESIQDQVEKTLMQNGFYDEAKSYILFRFQRTERRNAINNIVADAEDEDLKPIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + D T + ++ L + C D + ++D +AL+ + Sbjct: 112 RKISSDYTSVEYSLLLLSDKFKSFCK-------------------DDMKQADKLSALVKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + + +E PN+ + AR L KL R + + + +++ L +E + Sbjct: 153 AVEMTTQEAPNWEFIAARLLSYKLNRSIAAFEDSVGVHSFYDKLRYL--------TDERL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + S ++ A +K ER+ Y GL +L RY + N IE Q ++ Sbjct: 205 YGDYILASYSPEEIAQAATFIKEERNDLLNYSGLDLLMKRYLIRTYNNKPIESIQEMYLG 264 Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E ++ +FY++LS +TPTL N+ QLSSCF+ TVPD L G Sbjct: 265 IALHLAINEKEDRMLWVNKFYDILSKLEVTMATPTLSNARKPFHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L A ++K+ GG+G + VR G I G G + GV+ ++K+ NDTAVAV+Q G Sbjct: 325 IYRSLDNFAQVSKFGGGMGMYFGKVRAAGGKIRGFKGAAGGVVRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQEDINQPWH 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + A R +S + R +L E Sbjct: 445 LFCPNEILSIKGYCLEDYYGEEWEKRYIDCVSDARLTR----RTLSVKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 501 TGTPFTFNRDHVNKANPNGHKGMIYCSNLCTEIAQNMSEIESVSTEVKTDDGDTVVVRAS 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L + +L +RT +R LDNVIDIN + + A+ +N Sbjct: 561 KPGDFVVCNLASLSLGHL---PLENESELTDVVRTVIRALDNVIDINFYPLPYAQITNQR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R++GLG+ G+ AL + I + S E ++ D+ E I+ A+ AS ++A+++G+Y F+ Sbjct: 618 YRSLGLGVSGYHHALAVRGIKWESQEHLDFVDKVFETINRAAVEASSDIAKQKGSYKYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + + W L +VK GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------EYFTKRGYTSPEWTALAAKVKEQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP Q +++ V EL R W Sbjct: 724 SIIAGTTAGTDPVMQRFFLEEKKGAMLPRVAP----ELSDRTFW---------------- 763 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ +A+ ID W + +A RQ+ IDQAQS NLY+ ++ S ++L +Y Sbjct: 764 -----------VYKSAYNIDQQWTVRAAGVRQRHIDQAQSQNLYITNDFSMRQLLELYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWRSGVKTIYYVRSKS 828 >gi|257456710|ref|ZP_05621900.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii ATCC 35580] gi|257445903|gb|EEV20956.1| ribonucleoside-diphosphate reductase subunit A [Treponema vincentii ATCC 35580] Length = 849 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 274/914 (29%), Positives = 447/914 (48%), Gaps = 111/914 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR-SIRVQDIIKNLTEQTVTRLLQHN 87 + +IKRNG +++ KI+ A+ AF +V G A + + +++ +T + + + + Sbjct: 1 MDIIKRNGEREAYNAEKITLAMQAAFNSVTGAEAQQKNSDTGALLRQMTAEIEADIYELS 60 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 K+ V +E IQD VE +L++ + + ++LYR E++ R A+ + + L + Sbjct: 61 KNGSPVQVETIQDLVEKTLIEHNRYAEVKNFILYRVEQTKKRDARRAIAAHFTLIDILPV 120 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 + + L ++ + E+++ ++E++L T LI ++ Sbjct: 121 LTRIQQDFPDDQYSLTLLFHK--------------FESFRK--PDMTEAELLTLLIKAAV 164 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L +E P + + ARFL+ ++ T + K+ ++ + ++ L E+G+ Sbjct: 165 ELTAQEAPRWEFIAARFLMLDFSGKLKTELEKRNIRSFYDKLTYLE--------EKGLYG 216 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325 + +L + ++ F Y GL +L RY + G +E PQ F+ +A Sbjct: 217 AYIRAGYSKEELEQAYAYIDNSKNDLFTYSGLDLLLRRYVISTRGHIPLETPQEMFLGIA 276 Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 + LAL E ++ + FY +LSS +TPTL N+ + QLSSCF+ TVPD L GI+ Sbjct: 277 LHLALHEQKDRMEWVRRFYLMLSSLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIY 336 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ A ++K+ GG+G + VR +GA I G G + GVI ++K+ANDTAVAV+Q G R Sbjct: 337 RSIDNFAKISKFGGGMGLYFGKVRAVGAPIRGFQGAAGGVIRWIKLANDTAVAVDQLGVR 396 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLF 502 +G+V YL+ WH DV EFL LR N GDDR + HD+ A PDLF + V ++ A W L Sbjct: 397 QGSVAVYLDVWHKDVPEFLQLRTNNGDDRMKAHDVFPAVCCPDLFWRTVDEDIGASWYLM 456 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P E+ L D YG+E+E Y++ + R+I L R +L ETG Sbjct: 457 CPHEILTVKGYALEDFYGEEWEKRYKDCINDNRISK----REIPVKELVRLILKSAVETG 512 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------- 596 P+I +D N +P H G+++SSNLCTEI N S Sbjct: 513 TPFIFNRDHANRANPNGHKGMIYSSNLCTEIAQNMSPIHAVNTEIQTQDGETVVVTVTKP 572 Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VCNL S+ L + + +L I AVR LDNVID+N + + AK +N +R Sbjct: 573 GDFVVCNLASLVLGNIDTD---NDAELEGIIEAAVRALDNVIDLNFYPVPYAKITNEQYR 629 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 AIGLG+ G+ L HI + S +++ADE E I+++A+ AS+++AQE+GAY F+ S Sbjct: 630 AIGLGVSGYHHLLAKKHIAWESDAHLKLADELFEKINYYAVQASMQIAQEKGAYRLFEDS 689 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W G R W+ L++ V G+RN +A+APT++ + Sbjct: 690 DWQTG--------------AYFEKRRYQSERWNALREEVARHGIRNGYLLAVAPTSSTSI 735 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + IDP + +++ V L Sbjct: 736 VAGTTAGIDPIMKRYFLEEKKGSLVPRVAPAL---------------------------- 767 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 D ++ A ID +W I + RQ+ IDQ QS+N Y+ ++ S +++ +Y +AW Sbjct: 768 ---SLDTYWLYKNAHTIDQLWSIRACGLRQRHIDQGQSMNFYITNDYSFRQVLNLYVEAW 824 Query: 894 LMGLKTTYYLRSRS 907 G+K+ YY+RSRS Sbjct: 825 KNGIKSVYYVRSRS 838 >gi|319902177|ref|YP_004161905.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides helcogenes P 36-108] gi|319417208|gb|ADV44319.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides helcogenes P 36-108] Length = 839 Score = 566 bits (1457), Expect = e-158, Method: Composition-based stats. Identities = 274/914 (29%), Positives = 438/914 (47%), Gaps = 121/914 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +D KI+ AI K+F++ K + I L + + + + Sbjct: 1 MEITKRNGTREPYDKEKIATAIRKSFISTGQKV------TDETIYILVREVENFVDGNME 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + ++E IQD+VE LM+ G + + Y+LYR +R++ R A ++ ++ + I+ Sbjct: 55 NR---NVERIQDEVERCLMEHGFYTEAKNYILYRWQRTERRKALNNIVNEVGDTTLMDIL 111 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207 + + C + S I+L+E + + Y ++ + TAL+ ++ Sbjct: 112 KS-------------IQQDFTC----NEYSLIMLAEKFSSFYKPEMASKERLTALVKAAI 154 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L +E P++ + AR L +L +E+ + + ++ L E Sbjct: 155 ELTTQEAPDWEFIAARILNFQLSKELKEQEGVAGIHSFYEKLCFLTNEGL--------YG 206 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVA 325 + + ++ L ERD Y GL +L RY + + IE Q ++ +A Sbjct: 207 DYILAAYSPQEIEEAEGFLCSERDKLLNYSGLDLLAKRYLIRTRSHQLIESVQEMYLGIA 266 Query: 326 MGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 + LA+ E + + Y+LLS +TPT+ N+ + QLSSCF+ TVPD L GI+ Sbjct: 267 LHLAMPENKNRMSWVKKIYDLLSCLEATMATPTMANARKPYHQLSSCFIDTVPDSLEGIY 326 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G R Sbjct: 327 RSIDNFAMVSKFGGGMGLYFGKVRASGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLGMR 386 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502 +GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + N W +F Sbjct: 387 QGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQVWYMF 446 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P+E+ L D YGKE+E Y + + + R IS + R +L ETG Sbjct: 447 CPNEIMTVKGYCLEDFYGKEWECRYLECVKDSRLSK----RSISIKDIIRLVLRSAVETG 502 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------- 596 P+ +D N +P H G+++ SNLCTEI N S+ E Sbjct: 503 TPFTFNRDTVNYANPNTHKGIIYCSNLCTEIAQNMSAIENISTDIKTKEGDTVVVKTVRP 562 Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VCNL S++L D +++ + T VR LDNVID+N + + A+ +NH +R Sbjct: 563 GDFVVCNLASLSLGHL---PLEDEEQMRDKVATIVRALDNVIDLNFYPVPFARITNHRYR 619 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +IGLG+ G+ AL L I + S E + D+ E I++ AI AS +LA+E+G Y+ F+GS Sbjct: 620 SIGLGVSGYHHALALRGIHWESDEHLHFMDKVFERINYAAIQASADLAKEKGKYAYFEGS 679 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W G + + W L K+V GMRN+ +AIAPT++ Sbjct: 680 DWQTG--------------AYFSKRGYTSSAWQRLAKKVSEYGMRNAYLLAIAPTSSTGI 725 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 I G + DP + +++ V Sbjct: 726 IAGTTAGTDPVMKRFFLEEKKGAMLPRVAP------------------------------ 755 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 + D I+ A+ ID W I +A RQ+ +DQAQSLNLY+ +E + +++ +Y AW Sbjct: 756 -GLSDKTYWIYKGAYLIDQQWSIRAAGIRQRHLDQAQSLNLYITNEFTMRQVLRLYLLAW 814 Query: 894 LMGLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 815 ECGVKTLYYVRSKS 828 >gi|332022563|gb|EGI62865.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex echinatior] Length = 748 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 231/756 (30%), Positives = 389/756 (51%), Gaps = 32/756 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + ++ +E C GL V + N+ G++ S+L+ Sbjct: 8 MHVLKRDGHKEPVHFDKITGRIEALCYGLDMNYVDPSAIALRVITNLCSGVTTSELDNLA 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ T+I + P+YA + +R + L +E +K + LY E Sbjct: 68 AETAATMINQHPDYATLASRIAISNLHKET--------KKVFSEVIANLYYAKSSITNEH 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + ++ + L + + Y+RDF + Y ++L + L +NG +E PQ M Sbjct: 120 LPIISEKYYQIIQNNADKLNSAILYDRDFNYSYATFKMLESDHLLKLNGKVVERPQHMLM 179 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 R+A+ + ++ +K +E YN +S +F+ + T+ + T Q++S FL T+ D + Sbjct: 180 RIAVAIHGEDIDKV---IETYNFMSKQYFIYAAQTIDTACTITQQMASTFLLTMSGDSID 236 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI L+ +L Y+G +G + +R I GT G S G++P LK + + V++ Sbjct: 237 GILDTLERFTILCDYNGEIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKTYDTSIGTVSKN 296 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 K +G + YLE WH D+ EFLDL+++ G+++ R M W P+LFMKRV + W+L Sbjct: 297 DKNEGPITVYLEPWHSDIFEFLDLKRSIGEEQLRAKGMCYGLWTPNLFMKRVFDDDVWSL 356 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E L + +G EFE Y YE+ E + R+I A LW ++ + ETG P+I Sbjct: 357 MCPHECPGLIEAWGDEFETLYTKYEQ-----EGRFRRQIKARELWLLIIQIQCETGVPYI 411 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYD 619 FKD CN +S QH+G + S+ TE+ SSS+E A+CN SI N+ + FD+ Sbjct: 412 IFKDHCNYKSNHQHLGTIKCSSFSTEVVQYSSSDEVAMCNTASIAVNMFVNSTKKVFDFY 471 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL + LD +ID+N + + +AK S HR+IG+G+ G A L+ P+ S EA Sbjct: 472 KLKEIAKIVTHNLDKMIDVNVYPLPEAKLSCDKHRSIGIGVQGLADAFILMRYPFESKEA 531 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 E+ + E + + A+ AS E+A E+G Y S+K S +G+ D + Sbjct: 532 NELNVQIFETLYYGALEASCEIATEKGPYESYKDSPISEGILQFDMWH----------VK 581 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T+ WD LK ++ G+RNS +A A +A + + SI+P N+Y +S + Sbjct: 582 PTNLWDWDILKAKIAKHGLRNSLLIAQMSDAFMAQMLENNMSIEPYMSNIYTIHALSKQY 641 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +++ L+ +L ++ LWDE M + + ++ GSI NIE IP+DLK ++ T +E+ + E Sbjct: 642 SIIKPHLLRDLIEKGLWDENMCNKIIFNGGSIQNIEEIPEDLKLLYKTVWEMPQKTIFEM 701 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLM 895 A+ R +IDQ+Q LN+++ +P +KL ++ AW Sbjct: 702 AASRGPFIDQSQCLNVHMIDP-LEKLTSMHFFAWES 736 >gi|317122810|ref|YP_004102813.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermaerobacter marianensis DSM 12885] gi|315592790|gb|ADU52086.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermaerobacter marianensis DSM 12885] Length = 855 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 318/795 (40%), Positives = 454/795 (57%), Gaps = 51/795 (6%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 LE L+ ++ + +EP +V R L +L R VL P Y F Sbjct: 74 LEELLVQAATQHLHREPRMERVAVRARLRQLYRCVLNDEAPSP---------AAYRAAFP 124 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 YI +GV L E ++ FDL LA L+ ERD ++GL L DRY + SR +E Sbjct: 125 AYIRKGVACGALDERLLAFDLDELAASLRPERDETLPFIGLVTLMDRYLVREPESRQWLE 184 Query: 316 MPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ FMRVAMGLAL E + A FY+ +S+F ++ STPTLFN+GT H QLSSC+L Sbjct: 185 TPQFLFMRVAMGLALAEEPGHRGAWARRFYHAMSTFRYLPSTPTLFNAGTPHHQLSSCYL 244 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + I A ++ LAKY+GG+G T +R G+ + G NG+S GVIPF+ + Sbjct: 245 ADVHDSMDHILDAARDFGRLAKYAGGIGASVTRLRAAGSPVRGINGESSGVIPFVHFYDA 304 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 AVNQGG+R+G + YLE WH+++E FLDL++N+GD R H +NTA WIPD F++RV Sbjct: 305 LIKAVNQGGRRRGTLAVYLEPWHLEIEAFLDLKRNSGDPYLRAHSVNTALWIPDEFLRRV 364 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI--KVFRKISAVALWRKMLT 551 W LF P V +L + G++F AY RQA+ G + + ++++ A L+R++L Sbjct: 365 EAGEPWYLFDPAYVPELPEKVGRDFAAAYAERIRQAEAGALPARAWKRVDARQLFREILA 424 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 L ET HPW+ FKD N+RS GV+HSSNLCTE+ L ++++E AVCNL S+NL H Sbjct: 425 TLQETSHPWLVFKDAGNLRSLLP--GVIHSSNLCTEVFLPTTADEVAVCNLASVNLARHL 482 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+D LA T+ A+R LDNVID+N + IEKA++SN HR +GLG+MGF A++ L Sbjct: 483 GPQGIDWDALAETVAVAMRGLDNVIDLNLYPIEKARRSNLRHRPVGLGVMGFAEAVNRLG 542 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 YA PEA ++ D +EFIS+HAI AS LA+ERG++ +F S W QG PID++ L Sbjct: 543 WGYADPEAADLVDRVLEFISYHAILASHRLAEERGSFPAFAESGWAQGRVPIDTLADLEA 602 Query: 732 VRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++RT+RL W+ ++ +V+ GMRN MAIAPTATI+ I G + S+DP Y N++ Sbjct: 603 ERGEPVTVDRTARLDWESVRAQVRR-GMRNGTVMAIAPTATISLIAGTTPSLDPPYANVF 661 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG F +N LV EL++R LW EA+ + G + I +P D++ + TA++ Sbjct: 662 SRQTLSGKFLEINRVLVEELERRGLW-EAVRDRIVEERGDLQPIAELPSDIRHRYPTAYQ 720 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + P +E A+R QKW+D S NL+L + ++ +Y +AW GLK+TYYL Sbjct: 721 VPPEAYLEVAARAQKWVDMGISRNLFLADRDLGTMERVYVEAWRRGLKSTYYLFMAPRMY 780 Query: 911 VEKSTLKGVDGKLN--------------------------AVPVTDPNSSTHSLGIPSSC 944 E ST++ + S+T +L + C Sbjct: 781 AEPSTVRVNKARRKLRWNLDDGTVAATVAAPAKAAVTAGPGDQARPGASATGALEAAAVC 840 Query: 945 TSDTE-----CEVCQ 954 + CE CQ Sbjct: 841 RVRPDDPDLVCEACQ 855 >gi|313115921|ref|ZP_07801348.1| ribonucleoside-diphosphate reductase, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310621685|gb|EFQ05213.1| ribonucleoside-diphosphate reductase, alpha subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 847 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 271/925 (29%), Positives = 429/925 (46%), Gaps = 126/925 (13%) Query: 20 YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79 ++ +++ KRNG F KI A+ KAF +G+G R D + Sbjct: 1 MTGEDERIEMEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMD-------EI 50 Query: 80 VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSK 136 + +L + + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS VR + + Sbjct: 51 LATVLNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTV 110 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 D + L+ + D T ++ L+M E C G++E Sbjct: 111 GDDSLDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTED 151 Query: 197 DLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 + AL ++ L E P + + AR L R + Q+ + LY + Sbjct: 152 ERAEALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK- 203 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RI 314 ++G+ + ++ + L ERD F Y GL +L RY + + Sbjct: 204 LRYLTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRVPL 263 Query: 315 EMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E PQ F+ +A+ LA+ E +++ FY++LS +TPT+ N+ + QLSSCF+ Sbjct: 264 ETPQEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFV 323 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD L GI+ +L A ++K+ GG+G + VR G+ I G G + GVI ++++ ND Sbjct: 324 DTVPDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVND 383 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Sbjct: 384 TAVAVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLA 443 Query: 494 TQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 +N W L P E+ L D +G E+E Y + + R ++ + Sbjct: 444 EENIDAPWHLMCPHEILTVKGYALEDYWGTEWEKRYLDCVNDPRIEK----RSVTVKDIV 499 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-------- 598 R +L ETG P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 500 RLVLRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTEN 559 Query: 599 ---------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 VCNL S++L D + T+ TA+R LDNVID+N + + Sbjct: 560 GDTIVVTATRPGEFVVCNLASLSLGNLPVE---DEAYMERTVETAIRALDNVIDLNFYPL 616 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E A+ +N +R+IGLG+ G+ L I + S E + D E I++ A+ A LA+ Sbjct: 617 EYARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAR 676 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G Y+ F+GS W G + W L K V GMRN+ Sbjct: 677 EKGRYALFEGSDWQTG--------------AYFEKRGYTSEKWRALAKTVAVQGMRNAYL 722 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +A+APT++ + + G S IDP + +++ V Sbjct: 723 LAVAPTSSTSILSGTSAGIDPIMKKFFLEEKKGSMLPRVAP------------------- 763 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 + D + A ID W + +A RQ+ IDQAQS+NLY+ ++ S Sbjct: 764 ------------ELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSM 811 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y +AW G+KT YY+RS++ Sbjct: 812 RQVLRLYLEAWRAGVKTIYYVRSKA 836 >gi|160942849|ref|ZP_02090089.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii M21/2] gi|158445901|gb|EDP22904.1| hypothetical protein FAEPRAM212_00326 [Faecalibacterium prausnitzii M21/2] Length = 847 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 271/925 (29%), Positives = 429/925 (46%), Gaps = 126/925 (13%) Query: 20 YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79 ++ +++ KRNG F KI A+ KAF +G+G R D + Sbjct: 1 MTGEDERIEMEIRKRNGESVPFQQEKIFNAMKKAF---DGQGKEIGSREMD-------EI 50 Query: 80 VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERS---DVRAAQSHSK 136 + +L + + + +E +QD+VE +LM+ GH+++ + Y+LYRE+RS VR + + Sbjct: 51 LATVLNNLSVTVPLTVERVQDEVERTLMERGHYEVAKAYILYREKRSALRRVRHTIARTV 110 Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 D + L+ + D T ++ L+M E C G++E Sbjct: 111 GDDSLDEVLRRIQMDFTEEVYSLAALQMKFESFCRL-------------------GMTED 151 Query: 197 DLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 + AL ++ L E P + + AR L R + Q+ + LY + Sbjct: 152 ERAEALTKAAVELTTAEAPKWEFIAARLLNHSFR-------CRNAQEWEGRGVGDLYGK- 203 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RI 314 ++G+ + ++ + L ERD F Y GL +L RY + + Sbjct: 204 LRYLTDKGLYGDYILAHYTHEEIAMAEDFLCPERDELFTYSGLDLLLKRYVIQSRSRAPL 263 Query: 315 EMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 E PQ F+ +A+ LA+ E +++ FY++LS +TPT+ N+ + QLSSCF+ Sbjct: 264 ETPQEMFLGIALHLAMNEGSDRMGWVKRFYDMLSRMEVTMATPTMSNARKPYHQLSSCFV 323 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD L GI+ +L A ++K+ GG+G + VR G+ I G G + GVI ++++ ND Sbjct: 324 DTVPDSLDGIYRSLDNFAKVSKFGGGMGMYFGKVRAAGSTIRGFQGAAGGVIRWIRLVND 383 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Sbjct: 384 TAVAVDQLGMRQGAVAVYLDAWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWRLA 443 Query: 494 TQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 +N W L P E+ L D +G E+E Y + + R ++ + Sbjct: 444 EENIDAPWHLMCPHEILTVKGYALEDYWGTEWEKRYLDCVNDPRIEK----RSVTVKDIV 499 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA-------- 598 R +L ETG P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 500 RLVLRSAVETGTPFAFNRDSVNHMNPNGHTGMIYCSNLCTEIAQNMAPIEHISTEVHTEN 559 Query: 599 ---------------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 VCNL S++L D + T+ TA+R LDNVID+N + + Sbjct: 560 GDTIVVTATRPGEFVVCNLASLSLGNLPVE---DEAYMERTVETAIRALDNVIDLNFYPL 616 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 E A+ +N +R+IGLG+ G+ L I + S E + D E I++ A+ A LA+ Sbjct: 617 EYARLTNQKYRSIGLGVSGYHHMLAKRGIHWESDEHLAFTDAVFELINYAAVKADTALAR 676 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G Y+ F+GS W G + W L K V GMRN+ Sbjct: 677 EKGRYALFEGSDWQTG--------------AYFEKRGYTSEKWRALAKTVAVQGMRNAYL 722 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +A+APT++ + + G S IDP + +++ V Sbjct: 723 LAVAPTSSTSILSGTSAGIDPIMKKFFLEEKKGSMLPRVAP------------------- 763 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 + D + A ID W + +A RQ+ IDQAQS+NLY+ ++ S Sbjct: 764 ------------ELSMDTWWYYKAAHLIDQSWSVRAAGLRQRHIDQAQSMNLYITNDYSM 811 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 +++ +Y +AW G+KT YY+RS++ Sbjct: 812 RQVLRLYLEAWRAGVKTIYYVRSKA 836 >gi|289450489|ref|YP_003474450.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185036|gb|ADC91461.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 844 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 269/919 (29%), Positives = 435/919 (47%), Gaps = 126/919 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG + +F +KI+ A+ KAF +G + D + LTE+ + Sbjct: 1 MKIEKRNGQIETFRSAKITAAMAKAF---DGLNVPIN---DDQLLKLTEKVEKLINTEVA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD---APIAPKL 145 + ++ +E +QD VE LMQ G++++ + Y+LYR ER+ R + + L Sbjct: 55 NGYVLKVERVQDLVEKILMQEGYYEVAKSYILYRSERAQKRTMRRQLTELVKFQGLDETL 114 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIF 204 + + D +++ +L + + Y + + LI Sbjct: 115 RSIQKDYKSDNYSLD--------------------LLLAKFNSFYKLDMPFQEAMRMLIK 154 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ L +E P + + AR ++ ++ ++ + +++ LY + EG Sbjct: 155 AAVELTTQEAPAWEFIAARLMMLQINEQI-------GEVCKQFKLRNLYDK-ISYLENEG 206 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 + R + +S ++ + + ER+ Y GL +L RY +H IE PQ F+ Sbjct: 207 LYGRYILQSYSKEEIATAESFIVEERNKLLNYSGLDLLCKRYVIHNYRHQIIETPQEMFL 266 Query: 323 RVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 +A+ LA+ E + +FY++LS +TPTL N+ + QLSSCF+ TVPD Sbjct: 267 GIALHLAMHEKNGDERMGWVRKFYDMLSQLQVTMATPTLSNARKPYHQLSSCFIDTVPDS 326 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L GI+ ++ A ++K+ GG+G + VR +G+ I G G + GVI ++K+ANDTAVAV+ Sbjct: 327 LEGIYRSITNFAQVSKFGGGMGLYFGKVRAIGSSIRGFQGVAGGVIRWVKLANDTAVAVD 386 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG- 498 Q G R+G+V YL+ WH DV EFL +R N GDDR + HD+ A PDLF ++V N Sbjct: 387 QLGMRQGSVACYLDIWHKDVPEFLQVRTNNGDDRMKAHDIFPAICYPDLFWRQVRDNINS 446 Query: 499 -WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W L P EV L D YG+E+E Y + R + R+I L R +L Sbjct: 447 SWYLLCPHEVLTVKGYALEDYYGEEWEKRYLDCVRDNRISK----REIPLKELVRLILKS 502 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG P+ +D N +P +H G+++ SNLCTEI N S Sbjct: 503 CVETGTPFTFNRDIVNRNNPNKHKGIIYCSNLCTEICQNMSEIKQVSLELKDENGDTVVV 562 Query: 596 ------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 + VCNL S+ L ++L S + T VR LDNVID+N + + AK + Sbjct: 563 ETTKPGDFVVCNLASLALGRIDMKRP---EELESIVGTVVRALDNVIDLNFYPLPYAKHT 619 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N +R++GLG+ G+ L I + S E ++ D+ E I++ AI S+ELA+E+G Y Sbjct: 620 NKAYRSLGLGISGYHHMLAKNGIAWESEEHLQFVDKIFERINYAAIKTSMELAKEKGKYK 679 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 F+GS W G + + + W L V G+RN+ +AIAPT Sbjct: 680 YFEGSDWATG--------------EYFTLRNYTDEKWQSLASAVAKNGLRNAYLIAIAPT 725 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 ++ + I G + +DP + +++ V+ + EL W Sbjct: 726 SSTSIIAGTTAGLDPVMKRYFLEEKKG----VIMPRVAPELSLNTYW------------- 768 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888 ++ A ID W + +A RQ+ IDQAQSLNLY+ + +++ Sbjct: 769 --------------LYKEAHLIDQEWTVRAAGVRQRHIDQAQSLNLYVTQNLTFRQILGY 814 Query: 889 YRQAWLMGLKTTYYLRSRS 907 + +AW G+KT YY RS + Sbjct: 815 FIKAWENGVKTIYYCRSLA 833 >gi|269859792|ref|XP_002649620.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] gi|220066983|gb|EED44452.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon bieneusi H348] Length = 769 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 242/787 (30%), Positives = 403/787 (51%), Gaps = 36/787 (4%) Query: 161 RLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVT 220 R++ VEE + + K + + ++ ++ + ++I PNY K+ Sbjct: 15 RIKAFVEEF--NITSIDLKNYFKQVSSGLAMEMTCEEMSKYCSEVAASMITLHPNYNKLA 72 Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 + L++ L ++ + E+ V+ LH D Sbjct: 73 SVILIKYLHCSTHENFSERFLLLHSE---------LNIFDEDIVQLVKLHRKYYD----- 118 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 + + D+ F+Y GL L+ Y IN S +E PQ +M+VA+ L + Sbjct: 119 --DIIDSTNDYLFDYFGLITLFKTYLNKINNSIVERPQDIYMKVAIQLHRSNFDDV---K 173 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-YGIFGALQENAMLAKYSGG 399 Y LLS+F++ TPTL+NS + PQ++SCFL + DD GIF +++ A + K++GG Sbjct: 174 TTYELLSNFYYTHGTPTLYNSCLKKPQMASCFLLAMKDDSVEGIFETIKDCASIRKFNGG 233 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC-AYLETWHID 458 +G T +R + I+ T G+++G+IP +++ ++T N+ ++ C YLE WH D Sbjct: 234 IGMYLTNIRPNKSKINSTGGEAKGIIPVIRLISETIKYFNKNETKRSTSCAFYLEPWHPD 293 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + +FL+LRKNTG + R D +I D+FM+RV N W+LF P + L + +G EF Sbjct: 294 IFDFLNLRKNTGPEDMRARDAFIGLFINDIFMERVQNNENWSLFDPSIATGLINAWGDEF 353 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 YE YE+ + I A LW++++ ETG P++ +KD CN S Q ++G Sbjct: 354 NKLYEYYEKTIPKI------TIPAQKLWKEIICAQIETGTPYLVYKDSCNRNSNQNNLGT 407 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVID 637 + SSNLC EI S + T VCNL SI L N NQFD+ +L ++ L+ +ID Sbjct: 408 IKSSNLCAEIIEYSDANITGVCNLASICLPKFINNANQFDFKQLYQVMKKVTINLNKLID 467 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 I+ + ++AK SN R IG+G+ G AL + IP+ S +A E+ E + + + Sbjct: 468 ISFYPTKEAKYSNEATRPIGIGVQGLADALCKMRIPFESSQAKELNRMIFETMYYSVMET 527 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+ G Y S++ +G+F + L + D L + W++L+++++ G Sbjct: 528 SMELAKTYGPYPLITNSMYSKGIFHFEKY-LKNKNIDIL----SGLWDWEDLREKIRLYG 582 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNS ++I PTAT A ICG S+ ++P N+Y + G+F +VN +L+N+L + LW Sbjct: 583 VRNSLTLSIMPTATTAQICGNSECVEPITSNIYTRRTFVGEFQIVNKYLMNDLIKLGLWS 642 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 M + ++GSI NI IP ++K ++ T +EI +++ A RQ ++DQ+QSLNL++ Sbjct: 643 NEMKQLIIEYNGSIQNIPTIPSNIKNLYKTVWEIKMKCILDMAHERQAFVDQSQSLNLFI 702 Query: 878 DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 +P+ L ++ W +GLKT YYLR+ S K T+ + + Sbjct: 703 SQPTYAILSSMHFYGWKLGLKTGIYYLRTSPIASAIKFTIDKELIIRTLSSMKNDECEPP 762 Query: 937 SLGIPSS 943 + S Sbjct: 763 NCKECSC 769 >gi|9634360|ref|NP_037899.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera exigua MNPV] gi|6960598|gb|AAF33668.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera exigua MNPV] Length = 770 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 255/827 (30%), Positives = 404/827 (48%), Gaps = 71/827 (8%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGL 193 +++ I K KI+ + + L +++ C + V ++ + D + Sbjct: 4 ENNFEIDSKFKIIPSNNVSEN-----LTLLLNSLCKNIDTRYVDVPKLVHKVVAESGD-I 57 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 ++ + ++ +YA + R L+E L +V + + Sbjct: 58 GFDKIKLYCADVAASMTYVHYDYALLAGRILVEDLHSKVSSCFVTIANDLFSRNVLS--- 114 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 + F + +++ L N++K+ERD+ ++Y G + L + Y L I+ Sbjct: 115 DEFNQLVKKHGAI--------------LNNEIKHERDYNYKYFGFKTLTNGYLLKIDDVI 160 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +E PQ MRVA+ + + K +E Y L+S F ++PTLF++GTR Q+ SCFL Sbjct: 161 MERPQHMLMRVALAIHGDD---VKSVIETYQLMSLGTFTHASPTLFSAGTRRQQMCSCFL 217 Query: 374 TTVPDDL-YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 ++ DD GI+ L E+A+++ GGLG G G++ L+V N Sbjct: 218 QSIKDDSVDGIYKTLHESALISNLGGGLGLSAQNSGG------------SGLVNMLRVFN 265 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V+QGGKRKGA+ AY+E WH ++ EFL+LR+N G + + D+ WIPDLFMKR Sbjct: 266 NMVRHVDQGGKRKGALAAYIEPWHPEIYEFLNLRRNMGSEDTKARDLMLGLWIPDLFMKR 325 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V N W+LFS DL D YG +FE+ Y +YE R++ A L+R ++ Sbjct: 326 VKNNQMWSLFSHKTCPDLADKYGFDFEMRYCDYENAQV-----YERQVKARDLFRFIVET 380 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ETG P++ +KD CN S Q+++G + SNLC EI ETAVCNL SI + Sbjct: 381 NVETGGPYMLYKDHCNNFSNQKNLGTIKCSNLCAEIVQYCDENETAVCNLASIAVNKCVD 440 Query: 613 NN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + FDY L + VR L+ +ID+N + ++++SN HR IG+G+ G A LL Sbjct: 441 VDAKTFDYVLLKHLTKIIVRNLNKIIDVNHYPTAESERSNKKHRPIGVGIQGLADAFVLL 500 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 I Y S +A + E I F A+ AS ELA+ G Y S+ S +G+ + Sbjct: 501 DIAYDSDDARFVNYSIAETIYFAALEASCELAKINGPYESYTDSPVSRGILHFHNYD--- 557 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + N W+EL+ + G+RNS +A PTAT A I G ++S +P N+Y Sbjct: 558 DENGVYHSNN--LWDWNELQCNINKYGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVY 615 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 ++ ++G+F VVN +LV L D++ + + + +GS+ NI+ IP +K + TA+E Sbjct: 616 LRRVLAGEFQVVNQYLVKALIDLDIYTPELRNKILAENGSVQNIDEIPQHVKNLFKTAWE 675 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +I A+ R +IDQ+QSLNL++ EP+ + I+ AW LKT YYLR++ A Sbjct: 676 IKSKCIINMAADRAPFIDQSQSLNLFVAEPTYSVVSSIHFYAWEKKLKTGMYYLRTKPAA 735 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE---CEVC 953 K T+ + S D + C C Sbjct: 736 QATKFTVD--------------VETVASCSKKRKMNDDDDNVVCVSC 768 >gi|307169039|gb|EFN61884.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus floridanus] Length = 744 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 237/760 (31%), Positives = 395/760 (51%), Gaps = 34/760 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ C L V I+ ++Y G++ +L+ Sbjct: 1 MHVLKRDGRKEPVHFDEITARIKTLCYDLDMNYVDPSIIALRVITDLYSGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + ++I + P+YA + AR + L +E T + + LY + Sbjct: 61 SEIAASMINQHPDYAILAARIAISNLHKETKKTFSEV--------IADLYDAKNSITNKR 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + ++ + L + + Y+RDF + Y ++L + L +NG +E PQ M Sbjct: 113 LPIISEKYYKIIQSNADKLNSAIIYDRDFNYSYTTYKMLETNHLLKLNGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA+ + + +A+E YN LS +F+ TL + T Q++S FL T+ D + Sbjct: 173 RVAIAIH---DDDIDKAIETYNFLSKQYFIYPAQTLDTACTVTQQMASSFLLTMSGDSID 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI L+ +A+L Y+G +G + +R I GT G S G++P LK N + V++ Sbjct: 230 GILDTLERSAVLCHYNGDIGFNVHCIRAKNTPIRGTGGVSNGLVPMLKAYNTSIATVSRK 289 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 + V YLE WH D+ EFLDL+KN G+++ R DM A W PDLFM+R+ + W+L Sbjct: 290 NTEQ--VTVYLEPWHADIFEFLDLKKNIGEEKLRAKDMFYALWTPDLFMQRIFNDDVWSL 347 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E DL + YG+EFE+ Y YE+ E + ++I A LW ++ FETG P+I Sbjct: 348 MCPHECPDLIEAYGEEFELLYTRYEK-----EGRFRKQIKARDLWLLIIQTQFETGTPYI 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYD 619 +KD CN ++ Q++G + S TEI SSS+E A+CN SI N+ FD++ Sbjct: 403 VYKDHCNRKTNHQNLGTIKCSGFSTEIIQYSSSDEIAMCNTASIAVNMFVDPIKKTFDFN 462 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL ++ LD +ID N + + + K S HR+IG+G+ G A L+ P+ S EA Sbjct: 463 KLKEIVKIVTYNLDKMIDANFYPLPEIKLSCEKHRSIGIGVQGLADAFILMRYPFESQEA 522 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 ++ + E + + A+ AS E+A ++G+Y S+KGS +G+ D Sbjct: 523 RKLNIQIFETLYYGALEASCEIAIKKGSYVSYKGSPISKGMLQYDMWNAKP--------- 573 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 T W+ LKK+++ G+RNS +A A +A + + S++P N+YV +S F Sbjct: 574 -TDLWDWNTLKKKIEEHGVRNSLLIAQMSDAFMAQMLENNVSVEPYTSNIYVIHALSKQF 632 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +V L+ +L ++ LWDE + + + +DGSI NIE IP++LK ++ TA+E+ + + Sbjct: 633 RIVKPRLLRDLIEKKLWDENICNKIINNDGSIQNIEDIPNELKLLYKTAWEMPQKTIFDM 692 Query: 860 ASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 A+ R +IDQ+Q LN+++ +P +KL ++ AW GLK+ Sbjct: 693 AACRGPFIDQSQCLNVHMIDP-LEKLTSMHFYAWENGLKS 731 >gi|237726930|ref|ZP_04557411.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. D4] gi|229433786|gb|EEO43863.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides dorei 5_1_36/D4] Length = 839 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 284/916 (31%), Positives = 442/916 (48%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + + + + + ++ L Q+ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145 + +E IQD+VE SLM+ G + + Y+LYR +R++ R A S + D I+ L Sbjct: 55 NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D + ++ L C ++ + AL+ + Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ + + +++ L +EG+ Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323 + S ++ A + ERD F Y GL +L RY + IE Q ++ Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264 Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + + +FY++LS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Q N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YGK++E Y + + + R +S + R +L E Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKKWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N SS E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D ++ + T VR LDNVI++N + I A+ +NH Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA+E+G+Y F+ Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W L +V T GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D I+ +A+ ID W I +A RQ IDQAQSLNLY+ +E + +++ +Y Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTIYYVRSKS 828 >gi|265756567|ref|ZP_06090773.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_1_33FAA] gi|263233755|gb|EEZ19370.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 3_1_33FAA] Length = 839 Score = 562 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 286/916 (31%), Positives = 443/916 (48%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + + + + + ++ L Q+ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145 + +E IQD+VE SLM+ G + + Y+LYR +R++ R A S + D I+ L Sbjct: 55 NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D + ++ L C ++ + AL+ + Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ + + +++ L +EG+ Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323 + S ++ A + ERD F Y GL +L RY + IE Q ++ Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264 Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + + +FY++LS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Q N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YGKE+E Y + + + R +S + R +L E Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N SS E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D ++ + T VR LDNVI++N + I A+ +NH Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATLVRALDNVIELNFYPIPFAQITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA+E+G+Y F+ Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W GV + W L +V T GMRN+ +AIAPT++ Sbjct: 678 GSDWQTGV--------------YFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D I+ +A+ ID W I +A RQ IDQAQSLNLY+ +E + +++ +Y Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTIYYVRSKS 828 >gi|42525857|ref|NP_970955.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema denticola ATCC 35405] gi|41815907|gb|AAS10836.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema denticola ATCC 35405] Length = 845 Score = 562 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 277/917 (30%), Positives = 454/917 (49%), Gaps = 121/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG +++P KI AI AF +VE + II L ++ +L+ K Sbjct: 1 MQIIKRNGETKNYEPEKIEGAIRSAFKSVENSPH---TDLDTIIPPLVKEIEEDILELTK 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +V +E IQD VE +L++ ++ + ++LYR R+ R ++ Sbjct: 58 NGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMISR----------- 106 Query: 149 MDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 F++ ++ ++ E + + S ++ + + +SE++ LI +S Sbjct: 107 -------FFDTIEIQSVLTEIQNDFTSDEYSLNLLAHKFLSFRKENMSETESLAMLIKAS 159 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 L ++ P++ + AR L+ + + ++ T + K+ + + +++ L E Sbjct: 160 VELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGL--------Y 211 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 + E+ +L A+ + ER+ F Y L +L RY +H + +E PQ F+ + Sbjct: 212 GTYICEAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIHTHSNIVLESPQEMFLGI 271 Query: 325 AMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 A+ LA+KE ++ + FY++ S+ +TPTL N+ + QLSSCF+ TVPD L GI Sbjct: 272 ALHLAMKEKLKRLEWVRRFYDMTSTLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 331 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++K+ GG+G + VR +G+ I G G + G+I ++K+ANDTAVAV+Q G Sbjct: 332 YRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVAVDQLGV 391 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTL 501 R+G+V YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V + W L Sbjct: 392 RQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDINSSWHL 451 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG+E+E Y++ + + R+I L R +L ET Sbjct: 452 MCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKELVRLILKSAVET 507 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593 G P+ +D N + H G+++ SNLCTEI+ N S Sbjct: 508 GTPFAFNRDHANKTNTNPHKGMIYCSNLCTEISQNMSGIKHKNIEIKTEDGDTVVATTTI 567 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+ L N D ++ + + +AVR LDNVID+N + I A+ +N + Sbjct: 568 PGDFVVCNLASLVLGNIDVN---DEQEIDTIVSSAVRALDNVIDLNFYPIPYAQITNSRY 624 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ AL I + S E + AD+ E I++ AI AS ++A+E+G+YS F+G Sbjct: 625 RSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGSYSYFEG 684 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G + W L + VK+ GMRN+ +A+APT++ + Sbjct: 685 SDWQTG--------------EYFKKRNYVDENWKALTEEVKSNGMRNAYLLAVAPTSSTS 730 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP +N + + E K GS+ Sbjct: 731 IIAGTTAGVDPI----------------MNKYFLEEKK-----------------GSLMP 757 Query: 834 --IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 + + ++ A I+ W I +A RQ+ IDQAQS+NLY+ +E + K+ +Y Sbjct: 758 RVAPSLSPETYWLYKNAHHIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTFSKVLSLYV 817 Query: 891 QAWLMGLKTTYYLRSRS 907 +AW GLK+ YY+RSRS Sbjct: 818 KAWEEGLKSIYYVRSRS 834 >gi|212693365|ref|ZP_03301493.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855] gi|212664009|gb|EEB24583.1| hypothetical protein BACDOR_02878 [Bacteroides dorei DSM 17855] Length = 839 Score = 562 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 284/916 (31%), Positives = 442/916 (48%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + + + + + ++ L Q+ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145 + +E IQD+VE SLM+ G + + Y+LYR +R++ R A S + D I+ L Sbjct: 55 NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D + ++ L C ++ + AL+ + Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ + + +++ L +EG+ Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLAEQAEAAGIFSFYDKLRYL--------TDEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323 + S ++ A + ERD F Y GL +L RY + IE Q ++ Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264 Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + + +FY++LS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L AM++K+ GG+G + +R G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKIRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Q N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YGKE+E Y + + + R +S + R +L E Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N SS E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D ++ + T VR LDNVI++N + I A+ +NH Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA+E+G+Y F+ Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W L +V T GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D I+ +A+ ID W I +A RQ IDQAQSLNLY+ +E + +++ +Y Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTIYYVRSKS 828 >gi|325478799|gb|EGC81909.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 842 Score = 561 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 278/913 (30%), Positives = 437/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKR+G F+ KI RAI KAF +V+ S + ++ ++E+ + Q Sbjct: 1 MQIIKRDGNKVDFEKIKIERAISKAFFSVD------SSITEKDLRKMSEKIEQTIKQKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 I +E++QD VE +L+ +++ + ++LYR + + R + L I Sbjct: 55 KDHIPTVEEVQDLVELTLIDENYYREVKSFILYRAKHNMDRKVLADFSRYIEDKKVLNI- 113 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + + EE + + S + E++ + ++E D+ AL ++ Sbjct: 114 -------------ITEVQEEFDNQRYPIESLLFKFESF--LKPNMTEEDMLKALTRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARFL+ ++ E+ + + +++ L E+G+ Sbjct: 159 LTSKESPDWEIIAARFLMYQIDLEIEKSEERYELFDFKSKIEFL--------TEKGLYGA 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326 + E+ ++ L + Y R+ F Y GL +L RY + G IE Q FM +AM Sbjct: 211 YILENYSSEEIDELEKYMDYSRNNIFTYSGLDLLRKRYLITNHKGDLIERVQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIPEADKVAFAKRLYDILSNLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+G Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ +PDLF K R NA W +F P Sbjct: 391 AVAVYLDIWHKDIPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKLTRDDINADWHMFDP 450 Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE Y + + R +S + R ++ ETG P Sbjct: 451 HEVEKKYGKALEDTYGEEFEEFY----HKLVADKDISRRTMSVKDMVRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 +I +D N +P +H G+++SSNLCTEI N S E Sbjct: 507 FIFNRDIVNKANPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N+ D ++ T+RT VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGKVDVNDPTDLEE---TVRTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + + D E I+++AI S+E+A+E+G+YS F+GS Sbjct: 624 GLGTSGYHHMLVKNDIRWQDEKAHEDFVDRVYEDINYYAIKESMEIAKEKGSYSCFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 WD G W+ELK+ VK+ G+RN MA+APT + + I Sbjct: 684 WDTG--------------AYFDQRDYKSERWEELKEEVKSNGLRNGYLMAVAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ V L + Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A +ID + A RQ+ IDQAQS+N+Y+ E + +++ +Y AW Sbjct: 767 --------LYENAHDIDQNISMRMAGVRQRHIDQAQSVNIYITTEYTMRQILNVYITAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+R +S Sbjct: 819 SGVKSIYYVRGKS 831 >gi|320538425|ref|ZP_08038293.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema phagedenis F0421] gi|320144720|gb|EFW36468.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema phagedenis F0421] Length = 845 Score = 561 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 274/921 (29%), Positives = 440/921 (47%), Gaps = 113/921 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRNG ++ KI RAI AF +V AS + I+ +LT + + +K Sbjct: 1 MEIIKRNGERRPYEAEKIGRAIRAAFDSV---PASPHTDIGKIVDSLTMEIEGDIKDLSK 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +V +E IQD VE +L++ ++ + ++LYR +R+ R A+ + P ++ Sbjct: 58 NGNLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVDRTKKRDARKTIEQSFPTIDVRSVL 117 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + ++ E L +S K + + +SE + LI ++ Sbjct: 118 L-----------EVQNDFTEDEYNLNLLSHKFHSFKK-----NDMSERECLNLLIKAAVE 161 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L +E P + + +R L+ E+ + K+ + + ++ L E G+ Sbjct: 162 LTAQEAPRWELIASRLLMLSFTEELSVELEKRNIHSFYEKISYLE--------ENGLYGD 213 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAM 326 + + +L + + ER+ Y L +L RY + G +E PQ F+ +A+ Sbjct: 214 YIRKHYTKEELETAFSYIDTERNKLLTYSSLDMLLRRYVIRTRGHIPLETPQEMFLGIAL 273 Query: 327 GLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+ E E + +FY++LS +TPT+ N+ + QLSSCF+ TVPD L GI+ Sbjct: 274 HLAMLEKEKRMYWVKQFYDMLSKLQVTMATPTISNARKPYHQLSSCFIDTVPDSLDGIYR 333 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR +G+ I G G + G+I ++K+ANDTAVAV+Q G R+ Sbjct: 334 SIDNFAKISKFGGGMGLYFGKVRAVGSPIRGFQGAAGGIIRWIKLANDTAVAVDQLGVRQ 393 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503 G+V YL+ WH DV EFL LR N GDDR + HD+ A PDLF K V + W L Sbjct: 394 GSVAVYLDIWHKDVPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKTVRDDINASWYLMC 453 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+ L D +G E+E Y++ + + + R+I L R +L ETG Sbjct: 454 PHEILSVKGYSLEDYFGDEWEKRYKDCVQDSRISK----REIPIKELVRLILKSAVETGT 509 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------------- 595 P+ ++D N +P H G+++ SNLCTEI N S Sbjct: 510 PFAFYRDAANKTNPNGHKGMIYCSNLCTEIAQNMSPIQSQSQEIKTVDGETVVVTTTKPG 569 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + VCNL S+ L D +L + + VR LDNVID+N + + AK +N +RA Sbjct: 570 DFVVCNLASLVLGNIEVT---DRKELQRIVYSVVRALDNVIDLNYYPVPYAKITNGQYRA 626 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG G+ L +I + S E + D+ E I+F AI AS+++A+E+G+Y F+GS Sbjct: 627 IGLGTSGYHHMLAKQNIAWESEEHLRFVDKVFEDINFAAIEASMQIAKEKGSYLYFEGSD 686 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G + W L+K V+T GMRN +AIAPT++ + I Sbjct: 687 WQTG--------------AYFTKRNYTSERWQALQKEVQTSGMRNGYLLAIAPTSSTSII 732 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + DP + +++ V L + W Sbjct: 733 AGTTAGTDPVMKRYFLEEKKGALMPRVAP----ALSMKTFW------------------- 769 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A ID W + +A RQ+ +DQAQS+NLY+ + + KK+ +Y +AW Sbjct: 770 --------LYKNAHLIDQEWSMRAAGVRQRHVDQAQSVNLYITTDYTFKKVLGLYLKAWE 821 Query: 895 MGLKTTYYLRSRSATSVEKST 915 G+K+ YY+RS+S E T Sbjct: 822 EGVKSIYYVRSQSLEVEECET 842 >gi|150005610|ref|YP_001300354.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides vulgatus ATCC 8482] gi|254884473|ref|ZP_05257183.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 4_3_47FAA] gi|294778580|ref|ZP_06744002.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides vulgatus PC510] gi|319640835|ref|ZP_07995548.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A] gi|149934034|gb|ABR40732.1| ribonucleoside-diphosphate reductase subunit A [Bacteroides vulgatus ATCC 8482] gi|254837266|gb|EET17575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 4_3_47FAA] gi|294447529|gb|EFG16107.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides vulgatus PC510] gi|317387647|gb|EFV68513.1| ribonucleoside-diphosphate reductase [Bacteroides sp. 3_1_40A] Length = 839 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 283/916 (30%), Positives = 441/916 (48%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F++ + + + + + ++ L Q+ Sbjct: 1 MQIIKRNGTTESYDREKIAVAIRKSFISTQKEI------TDEAVYTIVDEVEQFLHQNEA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145 + +E IQD+VE SLM+ G + + Y+LYR +R++ R S + D IA L Sbjct: 55 NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKVLSQIITGTGDDTIANIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D + ++ L C ++ + AL+ + Sbjct: 112 KEIQKDFSGKEYSLTFLAEKFTSFCK-------------------PDMTSGERLAALVKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L +L +++ + + +++ L +EG+ Sbjct: 153 AVELTTQETPDWEFIAARLLNFRLTKKLTEQAEAAGIFSFYDKLRYL--------TDEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323 + S ++ A + ERD F Y GL +L RY + IE Q ++ Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264 Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + + +FY++LS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKQNRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKRDLNQQWH 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + + + R +S + R +L E Sbjct: 445 LFCPNEIMTVKGYCLEDYYGEEWEQRYMDCVNDSRLSK----RSMSIKDIVRLILRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N SS E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D ++ + T VR LDNVI++N + I A+ +NH Sbjct: 561 RPGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA+E+GAY F+ Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLSFMDKVFERINYAAIAASSELAKEKGAYHYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W L +V T GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D I+ +A+ D W I +A RQ IDQAQSLNLY+ +E + +++ +Y Sbjct: 758 -----SDKTYWIYKSAYLTDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTVYYVRSKS 828 >gi|255008713|ref|ZP_05280839.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis 3_1_12] gi|313146448|ref|ZP_07808641.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis 3_1_12] gi|313135215|gb|EFR52575.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides fragilis 3_1_12] Length = 838 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 275/916 (30%), Positives = 430/916 (46%), Gaps = 126/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG ++ KI+ AI K+F + + + + + ++ L Sbjct: 1 MQIIKRNGATEPYNREKIAVAIRKSFASTGREVP------DETVYTIVDEVELFLCDEVH 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD---APIAPKL 145 +E IQD+VE SLM+ G + + Y+LYR +R++ R A +H S +A L Sbjct: 55 R----SVEQIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKAFNHIVSSIGSEALADTL 110 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D ++ L C ++ + T LI + Sbjct: 111 KDIQKDFVANEYSLVILAEKFVNLCKT-------------------DMTAEERLTTLIKA 151 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR +L +++ + + +++ L +EG+ Sbjct: 152 AVELTSQEAPDWEFIAARLFNFQLTQKLKVQAEIAGIYSFYDKLRYL--------TDEGL 203 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + + ++ A + ERD F Y GL +L RY + + +E Q ++ Sbjct: 204 YGDYILSAYSPREIEVAAGFMCPERDKLFNYSGLDLLAKRYLIRTHSHEPMESVQEMYLG 263 Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ L + E + + +FY++LS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 264 IALHLGMSEKCDRLQWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEG 323 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 324 IYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 383 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + N W Sbjct: 384 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQQWY 443 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + + R ++ + R +L E Sbjct: 444 LFCPNEIMNVKGYCLEDYYGEEWEQKYLDCINDPLLSK----RVLNIKDIVRLILRSAVE 499 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N SS E Sbjct: 500 TGTPFTFNRDTVNRANPNSHRGIIYCSNLCTEIAQNMSSIETVSTEVRTEGGDTVVVNTV 559 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D ++ I VR LDNVID+N + I A+ +NH Sbjct: 560 RPGDFVVCNLASLSLGHL---PLEDERQMKEKIAVVVRALDNVIDLNFYPIPFARITNHR 616 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL L I + S E ++ D+ E I++ AI AS LA+E+G Y F+ Sbjct: 617 YRSIGLGVSGYHHALALRGIRWESVEHLDFIDKVFECINYAAIEASAGLAKEKGRYVYFE 676 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G A L W +L +V GMRN+ +AIAPT++ Sbjct: 677 GSDWQTG--------------AYFAKRGYDSLQWKDLAAKVAADGMRNAYLLAIAPTSST 722 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L Sbjct: 723 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPSL-------------------------- 756 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D ++ A+ ID W I +A RQ IDQAQSLNLY+ ++ + +++ +Y Sbjct: 757 -----SDKTYWLYKGAYRIDQTWSIRAAGIRQLHIDQAQSLNLYITNDFTMRQVLNLYLL 811 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 812 AWECGVKTVYYVRSKS 827 >gi|237710422|ref|ZP_04540903.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 9_1_42FAA] gi|229455144|gb|EEO60865.1| ribonucleotide-diphosphate reductase subunit alpha [Bacteroides sp. 9_1_42FAA] Length = 839 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 285/916 (31%), Positives = 441/916 (48%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG S+D KI+ AI K+F + + + + + + ++ L Q+ Sbjct: 1 MQIIKRNGATESYDREKIAVAIRKSFASTQKEI------TDEAVYTIVDEVELFLHQNEA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKS---DAPIAPKL 145 + +E IQD+VE SLM+ G + + Y+LYR +R++ R A S + D I+ L Sbjct: 55 NR---SVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALSQIITGTGDDTISNIL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D + ++ L C ++ + AL+ + Sbjct: 112 KEIQKDFSGKEYSLTLLAEKFTSFCK-------------------PDMTPGERLAALVKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P++ + AR L L +++ + + +++ L +EG+ Sbjct: 153 AVELTTQETPDWEFIAARLLNFLLTKKLTEQAEAAGIFSFYDKLRYL--------TDEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMR 323 + S ++ A + ERD F Y GL +L RY + IE Q ++ Sbjct: 205 YGNYILASYTPQEIETAAGFMCPERDKLFNYSGLDLLAKRYLIRTRSHEPIESVQEMYLG 264 Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + + +FY++LS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKQDRLQWVKKFYDILSRLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSLDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Q N W Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKQDLNQQWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YGKE+E Y + + + R +S + R +L E Sbjct: 445 LFCPNEIMTVKGYCLEDYYGKEWEQKYMDCVNDSRLSK----RCMSIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N SS E Sbjct: 501 TGTPFTFNRDTVNRANPNAHRGIIYCSNLCTEIAQNMSSIETVSTEICTEDGDTVVVKTI 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D ++ + T VR LDNVI++N + I A+ +NH Sbjct: 561 RSGDFVVCNLASLSLGHL---PLEDEKQMKEKVATVVRALDNVIELNFYPIPFAQITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + I + S E + D+ E I++ AI+AS ELA+E+G+Y F+ Sbjct: 618 YRSIGLGVSGYHHALAVRGIRWESEEHLNFMDKVFERINYAAIAASSELAKEKGSYHYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W L +V T GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFIKRGYNSPEWKALAVKVSTQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + DP + +++ V L Sbjct: 724 SIIAGTTAGTDPVMKRFFLEEKKGAMLPRVAPAL-------------------------- 757 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D I+ +A+ ID W I +A RQ IDQAQSLNLY+ +E + +++ +Y Sbjct: 758 -----SDKTYWIYKSAYLIDQTWSIRAAGIRQLHIDQAQSLNLYITNEFTLRQVLNLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWECGVKTVYYVRSKS 828 >gi|297587435|ref|ZP_06946080.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia magna ATCC 53516] gi|297575416|gb|EFH94135.1| ribonucleotide-diphosphate reductase alpha subunit [Finegoldia magna ATCC 53516] Length = 842 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 267/913 (29%), Positives = 438/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD SKI A+ KA+ +V ++ ++ + ++ ++ Sbjct: 1 MEIKKRDGNIVDFDRSKIKLAMKKAYASVGIYAE------ENELEAMAQEIENTIVNKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + R + ++I Sbjct: 55 KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFERFITDEDVIEI- 113 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + I E S + + + E++ + LS+ D+ L +S Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+ KE PN+ + + F+ L++ + + + +++ L E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEVQYDLQDFKSKIKFL--------DERGLYGS 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E D D+ L + +RD F + L ++ RY + + +E Q FM +AM Sbjct: 211 YIREVYTDDDIDELEKYIDDDRDKLFTFSALDLIIKRYLIKTHDNRVMESAQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LALKE ++ A + Y+ LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLALKEKDRIHWAKKIYDNLSTLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 +V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F P Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ +L D YG E+E Y + E R I L R ++ ETG P Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 + +D N +P +H G+++SSNLCTEI N S Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N + ++L + TAVR LDNVID+N + +E AK +N +R I Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623 Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + + + W+EL +K GMRN MA+APT + + I Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + ++DP +++ V Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY +AW Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYIRAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 819 KGIKSIYYVRSKS 831 >gi|15639992|ref|NP_219445.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema pallidum subsp. pallidum str. Nichols] gi|189026231|ref|YP_001934003.1| ribonucleotide-diphosphate reductase subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|6093975|sp|O83972|RIR1_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|3323332|gb|AAC65956.1| ribonucleoside-diphosphate reductase, subunit alpha (nrdA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018806|gb|ACD71424.1| ribonucleoside-diphosphate reductase, subunit alpha [Treponema pallidum subsp. pallidum SS14] gi|291060365|gb|ADD73100.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 845 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 275/913 (30%), Positives = 428/913 (46%), Gaps = 113/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + +IKRNG + KI AI AF +V+ A V II +L + +L + N+ Sbjct: 1 MHIIKRNGEPQPYMREKIIVAISAAFRSVQNPLAP---EVPAIITDLAAEVERQLFEMNR 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + + VH+E IQD VE +L + H + ++LYR++R+ R A+ + L ++ Sbjct: 58 AGVPVHVEKIQDFVEKTLTKYNHSDEVKSFILYRDDRTKKRIAREQIACCFTDSSVLGVL 117 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + F L ++SK +L + K + D L LI ++ Sbjct: 118 KEIQQDFPFPE-----------YSLDALASKFLLFK--KEVTDERRSMQL---LIKAAVE 161 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L +E P + + AR L+ + T++ K + + ++ L E G+ Sbjct: 162 LTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKITYLE--------EAGLYGV 213 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAM 326 + ++ A L+ RD F Y L ++ RY + +E PQ F+ +A+ Sbjct: 214 YIRTHYSRAEIEEAATYLECSRDKLFTYSSLDMILRRYVIRTRAHVPLETPQEMFLGIAL 273 Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+ E ++ + FY +LS +TPTL N+ QLSSCF+ TVPD L GI+ Sbjct: 274 HLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFVDTVPDSLDGIYR 333 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ + ++K+ GG+G + VR +GA I G G + G++ ++K+ANDTAVAV+Q G R+ Sbjct: 334 SIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLANDTAVAVDQLGVRQ 393 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503 G+V YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V N A W L Sbjct: 394 GSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNLGASWYLMC 453 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+ L D Y +E+E Y + + A + R I L R +L + ETG Sbjct: 454 PHEILTVKGYALEDFYAEEWEKRYWDCVKDARISK----RTIPIKELVRLVLKSVVETGT 509 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595 P+ ++D N +P H G+++ SNLCTEI N S Sbjct: 510 PFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKVVVQTTRPG 569 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + VCNL S+ L D +L +R AVR LDNVID+ + + A+ +N +RA Sbjct: 570 DFVVCNLASLVLSNID---LSDDKELREVVRVAVRALDNVIDLTYYPVPYAQVTNAYYRA 626 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+ G+ L I + S E + AD E I+ AI AS+ +A+E+GAY F GS Sbjct: 627 IGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKGAYGCFTGSD 686 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G W L++ V T GMRN +A+APT++ + I Sbjct: 687 WCTG--------------AYFRKRGYVSEDWQRLQREVATHGMRNGYLLAVAPTSSTSII 732 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + +DP + +++ V L Sbjct: 733 AGTTAGVDPIMKQYFLEEKKGMLMPRVAPSL----------------------------- 763 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ +A ++ W I +A RQ+ IDQAQS+NLY+ + + K++ +Y AW Sbjct: 764 --SQKTCPLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFTLKQVLDLYVYAWE 821 Query: 895 MGLKTTYYLRSRS 907 +G+K+ YY+RS+S Sbjct: 822 VGMKSLYYVRSQS 834 >gi|320120416|gb|EFE27702.2| ribonucleoside-diphosphate reductase, alpha subunit [Filifactor alocis ATCC 35896] Length = 842 Score = 559 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/913 (30%), Positives = 438/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q++KR+G FD SKI AI KAF++V S + I+++ + R+ Sbjct: 1 MQILKRSGEKREFDTSKIETAIQKAFLSVGLPVDS------EKIRSMVDTIEERVRTQFP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 IV +E+IQD VE L+++ ++ + + Y+LYR +R + + Sbjct: 55 KGHIVTVEEIQDLVEIVLIENNYYAVVKSYILYRASHHTMRK----------VIEDFEDY 104 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D +++ + ++ I E L + + + ++E + LI ++ Sbjct: 105 FSDKSIVE-ELREIQKIFTEDVYNL-----TFLFQKFKAFIKTNMTEEEYLGILIRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P + V AR L +L + + + + ++ L +E Sbjct: 159 LTSKEAPKWEFVAARLLSLQLNKRIEERANRLELYSFRDKIHYL--------TKEKRYGD 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326 + E + ++ L + LK ERD+ F Y GL ++ RY G +E Q FM +AM Sbjct: 211 YILEQYQEDEIDELESYLKQERDYLFNYSGLDLVIKRYLITDREGEVLEKVQEMFMGIAM 270 Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+ E E + K A + Y+++S +TPT+ N+ QLSSCF+ TVPD L GI+ Sbjct: 271 HLAIPEKENKVKWAKKIYDVISQLKVTMATPTMSNARKPFHQLSSCFIDTVPDTLDGIYR 330 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ + ++K+ GG+G + VR +G+ I G G + GVI ++K+ANDTAVAV+Q G R+ Sbjct: 331 SITNFSQVSKHGGGMGLYFGKVRAMGSDIRGHKGVAGGVIRWIKLANDTAVAVDQLGVRQ 390 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503 GA YL+ WH DV EFL +R N GDDR + HD+ A +P+ F K +N W + Sbjct: 391 GACAVYLDIWHKDVPEFLQIRTNNGDDRMKAHDVFPAICVPNYFWKLAKENRDANWYMMC 450 Query: 504 PDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+ L D YG+E+E Y++ + + R I+ + R +L ETG Sbjct: 451 PHEIEQVKGFRLEDCYGEEWEEKYQSCIEDSRIDK----RVITIKDMVRLILRSAIETGT 506 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596 P++ +D N +P H G+++SSNLCTEI N + E Sbjct: 507 PFVFNRDIVNEYNPNSHKGMIYSSNLCTEIAQNMQAIESISTEIVVVDGEEIVVEKNKAG 566 Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S+ L + +L + T VR LDNVI++N + + AK +N +RA Sbjct: 567 DFVVCNLASLVLGNIDVK---NKKELEEVVSTVVRALDNVIELNYYPLPYAKITNQKYRA 623 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG G+ +L + + S E ++ ADE E I++ AI S EL++E+GAY F+GS Sbjct: 624 IGLGTSGYHHSLVKNGMLFQSEEHLKFADEVYEDINYFAIKTSCELSKEKGAYPYFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G + W+EL+K V GMRN MA+APT + + I Sbjct: 684 WSNG--------------NYFDKRNYHSTRWNELRKEVNQYGMRNGYLMAVAPTGSTSVI 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + SIDP + +++ V +L W Sbjct: 730 SGTTASIDPVMKRYFLEEKKGQIVPRVAP----DLTAETFW------------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A EID W+I+SA RQ+ IDQ+QS+NLY+ E S ++ +Y A+ Sbjct: 767 --------MYENAHEIDQNWVIQSAGIRQRHIDQSQSVNLYITTEFSMSRMLKLYISAYE 818 Query: 895 MGLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 819 HGVKTIYYVRSKS 831 >gi|169825013|ref|YP_001692624.1| ribonucleotide-diphosphate reductase subunit alpha [Finegoldia magna ATCC 29328] gi|167831818|dbj|BAG08734.1| ribonucleoside-diphosphate reductase alpha subunit [Finegoldia magna ATCC 29328] Length = 842 Score = 559 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 271/913 (29%), Positives = 438/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD SKI A+ KA+ +V Q+ ++++ +Q ++ Sbjct: 1 MEIKKRDGNIVDFDRSKIELAMKKAYASVGIYAE------QNELESMAQQIENTIVNKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + R + ++I Sbjct: 55 KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFEKFITDDDVIEI- 113 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + I E S + + + E++ + LS+ D+ L +S Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+ KE PN+ + + F+ L++ + + + +++ L E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEIQYDLQDFKSKIKFL--------DERGLYGS 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E D D+ L + ERD F + L ++ RY + + IE Q FM +AM Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LALKE ++ A + Y+ LS +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 +V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F P Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ +L D YG E+E Y + E R I L R ++ ETG P Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 + +D N +P +H G+++SSNLCTEI N S Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISENIETEDGDDIIVTKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N + ++L + TAVR LDNVID+N + +E AK +N +R I Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623 Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + + + W+EL +K GMRN MA+APT + + I Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + ++DP +++ V Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY +AW Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 819 KGIKSIYYVRSKS 831 >gi|328950374|ref|YP_004367709.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus hydrothermalis DSM 14884] gi|328450698|gb|AEB11599.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinithermus hydrothermalis DSM 14884] Length = 789 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 316/747 (42%), Positives = 431/747 (57%), Gaps = 16/747 (2%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP +++ R LL RE L T P Y + F RY++ ++ L Sbjct: 54 EPAASQIAVRVLLRHNYREALGTPTPSP---------AAYRQGFIRYVQNAIREGYLDPR 104 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLAL 330 + D DL LA L+ ERD Y GL L DRY + +G +E PQ FMRVAMGLAL Sbjct: 105 LGDLDLEALATTLRPERDAELPYAGLVALLDRYVVRDLVSGRVLETPQFLFMRVAMGLAL 164 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 E E FY +S + STPTLFN+GT HPQLSSC+L + D L I LQ Sbjct: 165 AEAEPLAWIPRFYEAISRRRVLPSTPTLFNAGTPHPQLSSCYLWVIEDSLDAILDGLQTF 224 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 LAKY+GG+G T +R GA + G +G S GVIPFL V + AVNQGG+R+G + A Sbjct: 225 GKLAKYAGGIGASLTKLRAKGAPVRGISGHSSGVIPFLNVYDALIQAVNQGGRRRGTMAA 284 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YLE WH++VE FLDLRKNTGD R +NTA ++PD FM+RV + W LF P DL Sbjct: 285 YLEPWHLEVEAFLDLRKNTGDPYLRVRRLNTALFVPDEFMRRVERGEAWYLFDPQVAPDL 344 Query: 511 HDLYGKEFEIAYENYERQADRG--EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 + +G+ F+ AY Y + A+ G + ++K+ A L+R++L +L ET HPW+ FKD N Sbjct: 345 AETWGRAFDEAYARYIQAAEAGQLPPRSWKKLPARKLYREILAVLQETSHPWLVFKDAGN 404 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 RS VG+VHSSNLCTEI L +S EE AVCNL S+NL A+ + + LA + A Sbjct: 405 ARSALAAVGMVHSSNLCTEIFLPTSQEEIAVCNLASLNLAAYLQRGRIQWRALAKSAHLA 464 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 +R+LDNVID N + +A++SN +R +GLG+MGF L + Y PEA + D E Sbjct: 465 MRMLDNVIDQNLYPDPRAEQSNWNNRPVGLGIMGFSEVFSRLGLAYPDPEAYALTDRITE 524 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWD 747 ++S+HAI AS LA+ERGA+ F + W QG P+D++ L +R + ++R +RL WD Sbjct: 525 YVSYHAIQASALLARERGAFPRFPRTTWAQGRLPLDTLEDLERLRGAPVEVSREARLDWD 584 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L+ V+ GMRNS MAIAPTA+I+ I G + S+DP Y N++ ++N+SG F VN LV Sbjct: 585 ALRPLVQK-GMRNSTVMAIAPTASISLIAGTTPSLDPYYANVFSRNNLSGKFLEVNPVLV 643 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 LK+ LW+E G + IE IP+ L++ TA++I P IE A+R QKW+ Sbjct: 644 EALKRAGLWEEVRERI-VEERGDLSEIEAIPEPLRRRFPTAYQIPPTAYIEHAARAQKWV 702 Query: 868 DQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 D S NLYL E S + ++ +Y +AW GLK+TYYL E+ST++ + Sbjct: 703 DMGVSRNLYLQERSLEAMEAVYLEAWRKGLKSTYYLYVAPRMYAEQSTVRVNKARKRPKW 762 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + T + D CE CQ Sbjct: 763 RLEEMAFTPERPEIQDPSEDALCEGCQ 789 >gi|223983471|ref|ZP_03633657.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM 12042] gi|223964643|gb|EEF68969.1| hypothetical protein HOLDEFILI_00937 [Holdemania filiformis DSM 12042] Length = 841 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 280/918 (30%), Positives = 428/918 (46%), Gaps = 127/918 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+ V ++D KISRA+ AF +V + ++ K V ++ Sbjct: 1 MEIIKRDQSVQAYDRRKISRAVSAAFASV-------GHPLPEMTKEAILDQVEVQIRGAA 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL--- 145 V +E IQD VE +LM+ ++ R Y+LYR+E + +R + P L Sbjct: 54 ETAPVSVEQIQDWVEQALMRQNCYEEARHYILYRQEHARLRDQIDQLRRIIPDPEILATC 113 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + D + + + L V+ + + S LI + Sbjct: 114 RQLQRDFSQPAMSLDALIQKVQAFSK-------------------EKMKRSQQLDNLIRA 154 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 L+ +E P++ K ARF++ KLRR V + + + ++ L + Sbjct: 155 CVELVSQEAPDWEKAAARFMMIKLRRSVSQRMEAQGIRTLAQKLLYLEAQGLLN------ 208 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + L E DL L + ERD F GL++L RY + G +E+PQ FM Sbjct: 209 --KDLSEHYSYNDLNRLEQAIDNERDQLFNASGLELLIKRYLIRDHQGEVLELPQEMFMG 266 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA+ E + + A++ Y++LS +TPTL N+ QL+SCF+ VPD L G Sbjct: 267 IAMHLAIPEGKNRVEWAIKIYDVLSQLQVTMATPTLANARKPKAQLASCFIDVVPDSLKG 326 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L A ++K GG+G + VR G+ I G G + GV+ ++++ NDTAVAV+Q G Sbjct: 327 IYKSLDSFAQISKQGGGMGLYFGKVRASGSDIRGFQGAAGGVLRWIRLVNDTAVAVDQLG 386 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL +R N GDDR + HD+ A PDLF + + W Sbjct: 387 VRQGAVAVYLDCWHRDLPEFLQIRTNNGDDRMKAHDVFPAVCYPDLFWRMAKASLDQNWY 446 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 L P ++ L D G+ +E Y+ + + R I L R +L E Sbjct: 447 LMDPHQIQTVKGYALEDCTGELWEQRYQECVADSRIEK----RVILLKDLVRLILKSAAE 502 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592 TG P++ +D N +P H GV++ SNLCTEI N + Sbjct: 503 TGTPFVFNRDLVNAMNPNGHRGVIYCSNLCTEIAQNIAPAGEIETRMTEIDGEMVIIEQA 562 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + E VCNL S+NL D ++L S I VR LDNVID+N + + +A+++ Sbjct: 563 KAGEMVVCNLASLNLGRLNTE---DEEELRSVIEVTVRALDNVIDLNAYPLPQAQRTASR 619 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 RAIGLG+ G L I + S E + AD+ E I+++AI AS++LAQE+G Y+ F+ Sbjct: 620 SRAIGLGVSGLHHWLAKRSIFFESEEHLNAADKLFEAINYNAIRASLQLAQEKGRYADFE 679 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W L K V G+RN +AIAPT++ Sbjct: 680 GSDWQTG--------------AYFTKRGYTSDAWQTLAKEVARYGLRNGWLLAIAPTSST 725 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI- 831 + I G S +DP +N F + E K GSI Sbjct: 726 SVIAGTSAGVDPI----------------MNKFFLEEKK-----------------GSII 752 Query: 832 -GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 + + + A +ID W++ +A RQ+ IDQAQS+NLY+ + S + L + Sbjct: 753 ARVAPELNEKTYWYYKKAHQIDQTWVVRAAGVRQRHIDQAQSVNLYITTDYSLRDLLNLM 812 Query: 890 RQAWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 ILAWEKGVKTLYYVRSQS 830 >gi|302379637|ref|ZP_07268122.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna ACS-171-V-Col3] gi|302312544|gb|EFK94540.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna ACS-171-V-Col3] Length = 842 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 270/913 (29%), Positives = 438/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD SKI A+ KA+ +V Q+ ++++ ++ ++ Sbjct: 1 MEIKKRDGNIVDFDRSKIELAMKKAYASVGIYAE------QNELESMAQEIENTVVNKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + R + ++I Sbjct: 55 KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFEKFITDDDVIEI- 113 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + I E S + + + E++ + LS+ D+ L +S Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVDLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+ KE PN+ + + F+ L++ + + + +++ L E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEIQYDLQDFKSKIKFL--------DERGLYGS 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E D D+ L + ERD F + L ++ RY + + IE Q FM +AM Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LALKE ++ A + Y+ LS +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 +V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F P Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ +L D YG E+E Y + E R I L R ++ ETG P Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 + +D N +P +H G+++SSNLCTEI N S Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N + ++L + TAVR LDNVID+N + +E AK +N +R I Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623 Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + + + W+EL +K GMRN MA+APT + + I Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + ++DP +++ V Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY +AW Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 819 KGIKSIYYVRSKS 831 >gi|325475466|gb|EGC78647.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402] Length = 845 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 280/918 (30%), Positives = 449/918 (48%), Gaps = 123/918 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +Q+IKRNG +++P KI AI AF +VE + II L ++ +L+ K Sbjct: 1 MQIIKRNGETKNYEPEKIEGAIRSAFKSVENSPHKD---LDIIIPPLVKEIEEDILELTK 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 S +V +E IQD VE +L++ ++ + ++LYR R+ R ++ I P L Sbjct: 58 SGSLVQVETIQDLVEKTLIEHNYYAEVKNFILYRVGRTKRRDSRQMISRFFDTIEIQPIL 117 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + +D T ++ L + +SE++ LI + Sbjct: 118 TEIQNDFTSDEYSLNLLAHKFLSFRK-------------------ENMSETESLAMLIKA 158 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S L ++ P++ + AR L+ + + ++ T + K+ + + +++ L E Sbjct: 159 SVELTAQDAPDWEFIAARLLMLQFKLKLKTELEKRQIHSFYEKIKYLENEGL-------- 210 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + E+ +L A+ + ER+ F Y L +L RY + + + +E PQ F+ Sbjct: 211 YGTYICEAYSRDELEEAASFINEERNKLFTYSALDLLLRRYVIRTHSNTVLESPQEMFLG 270 Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+KE + + FY++ SS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 271 IALHLAMKEKSNRLEWVRRFYDMTSSLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDG 330 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR +G+ I G G + G+I ++K+ANDTAVAV+Q G Sbjct: 331 IYRSIDNFAKVSKFGGGMGLYFGKVRAVGSPIRGFMGAAGGIIRWIKLANDTAVAVDQLG 390 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WT 500 R+G+V YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V + W Sbjct: 391 VRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDDINSSWH 450 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 L P E+ L D YG+E+E Y++ + + R+I L R +L E Sbjct: 451 LMCPHEILKTKGYALEDFYGEEWEKRYKDCVADSRINK----REIPIKDLVRLILKSAVE 506 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------- 595 TG P+ +D N +P H G+++ SNLCTEI+ N S Sbjct: 507 TGTPFAFNRDHANKTNPNPHKGMIYCSNLCTEISQNMSEIKHKTIEIKTENGDTVVATTT 566 Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + VCNL S+ L N D ++ + + +AVR LDNVID+N + I A+ +N Sbjct: 567 IPGDFVVCNLASLVLGNIDVN---DEKEIDTIVSSAVRALDNVIDLNFYPIPYAQITNSR 623 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG G+ AL I + S E + AD+ E I++ AI AS ++A+E+G+YS F+ Sbjct: 624 YRSIGLGASGYHHALAKNGIAWESEEHLNFADKVFERINYAAIKASSQIAKEKGSYSYFE 683 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 S W G + W L + VK+ GMRN+ +A+APT++ Sbjct: 684 RSDWQTG--------------EYFKKRNYVDEKWKALAEEVKSNGMRNAYLLAVAPTSST 729 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + +DP +N + + E K GS+ Sbjct: 730 SIIAGTTAGVDPI----------------MNKYFLEEKK-----------------GSLM 756 Query: 833 N--IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 + + ++ A I+ W I +A RQ+ IDQAQS+NLY+ +E + K+ +Y Sbjct: 757 PRVAPSLSPETYWLYKNAHNIEQGWSIRAAGLRQRHIDQAQSVNLYITNEFTFSKVLSLY 816 Query: 890 RQAWLMGLKTTYYLRSRS 907 +AW G+K+ YY+RSRS Sbjct: 817 VKAWEEGVKSIYYVRSRS 834 >gi|329939693|ref|ZP_08288994.1| ribonucleotide-diphosphate reductase large chain [Streptomyces griseoaurantiacus M045] gi|329301263|gb|EGG45158.1| ribonucleotide-diphosphate reductase large chain [Streptomyces griseoaurantiacus M045] Length = 811 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 295/820 (35%), Positives = 427/820 (52%), Gaps = 60/820 (7%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTA 221 L + E + L D V + + E +L ++ LI ++P ++++ A Sbjct: 25 LLRTLTELSADLPDADPGRVAAAALRGRSRHAGEEELRELATEAAAGLISEDPAHSRLAA 84 Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L +R E + + + + E + + L Sbjct: 85 RLLTLTIRAEAASQ----GVTSFTSSVATGHREGLVA---------DRTAAFVRRHAARL 131 Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 + + D F Y GL+ L+ RY L IE PQ F +RVA GLA + A Sbjct: 132 DALVDPDADDRFGYFGLRTLHTRYLLRHPVTRKVIETPQHFLLRVASGLAEEADRAGAGA 191 Query: 340 VE-------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENA 391 + L+S ++ S+PTLFNSGTRHPQ+SSCFL P D+L I+ + A Sbjct: 192 DRAVEEVAALHGLMSRLEYLPSSPTLFNSGTRHPQMSSCFLLDSPEDELDSIYSRYHQVA 251 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K++GG+G ++ +R GA I GTNG S G++PFLK + + AVNQGG+RKGA Y Sbjct: 252 RLSKHAGGIGLAYSRIRSRGALIRGTNGHSGGIVPFLKTLDASVAAVNQGGRRKGAAAVY 311 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 LETWH D+EEFL+LR NTG+D RRTH++N A+WIPD FM+RV +A W+LFSP +V L Sbjct: 312 LETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFSPSDVPGLT 371 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 DL+G EF+ AY E E R + A L+ +M+ L TG W+TFKD N + Sbjct: 372 DLWGAEFDAAYRAAEA-----EGLAVRTLPARELYGRMMRTLASTGTGWMTFKDTANRTA 426 Query: 572 PQQ--HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---------------N 614 Q V+HSSNLCTEI + ETAVCNLGSINL A Sbjct: 427 NQTAEPGNVIHSSNLCTEILEVTEDGETAVCNLGSINLGAFVREGNTADAGTADAGAADG 486 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D+++L +T+RTAV LD VID+N + E+A +SN R +GLG+MG Q L L +P+ Sbjct: 487 GIDWERLDATVRTAVTFLDRVIDLNFYPTEEAGRSNARWRPVGLGVMGLQDVLFRLRLPF 546 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 SPEA ++ E + A S ELA G +++ + +GV D Sbjct: 547 DSPEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTARGVLHPDHY-------- 598 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + + W L++R+ GMRN+ +AIAPTATIA+I GV + ++P NL+ + Sbjct: 599 --DVELSWPERWAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECVEPQVSNLFKRET 656 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F VN +LV +LK+ WD L+ +GS+ + +P+++++++ TA+E+ Sbjct: 657 LSGEFLQVNPYLVADLKRLGRWDADTREALREANGSVEGLTWLPEEVRRLYRTAWELPQR 716 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 LI+ A+ R ++DQAQSLNL+L+ P+ KL +Y AW GLKTTYYLRSR AT Sbjct: 717 ALIDMAAARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKTTYYLRSRPATR---- 772 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + S + CE CQ Sbjct: 773 -IARAARAQRPAAEAPAPTVPDPEAVACSLENPEYCEACQ 811 >gi|313900055|ref|ZP_07833555.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. HGF2] gi|312955107|gb|EFR36775.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. HGF2] Length = 838 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 277/912 (30%), Positives = 434/912 (47%), Gaps = 118/912 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + F+ KI++AI KAF + +++II+++T+ Sbjct: 1 MKIQKRDGQLQEFEGEKIAQAIRKAFRST--GTLIEESVLKEIIEDITKAAAA------- 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 ++ +E +QD VE LMQ +K + Y+LYR++R++ R I Sbjct: 52 DKPMLSVEVVQDLVEEELMQHQFYKEAKNYILYRQKRTESRKVVQDLVHALQKEDLYSI- 110 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 ++ + L+ +L + + + + + + L+ +S Sbjct: 111 ----------LADIQQRYPDEGYDLRH-----LLMKFHSFLKEDMESDERLHMLMKASVE 155 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 LI KE P + + +RFL L E+ + K +++ L E+G Sbjct: 156 LISKEAPKWEYIASRFLSYALHEEISARMQKLELPVFSKKLKYLE--------EQGYYGD 207 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + ++ D ++ L LK ERD+ F Y GL+++ RY + +E PQ FM +AM Sbjct: 208 YIRKAYSDAEIDELGAYLKDERDYLFTYSGLELVKKRYLMCSHAHEVLETPQEMFMGIAM 267 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LAL E + A + Y++LS +TPT+ N+ + QLSSCF+ TV D L I+ + Sbjct: 268 HLALPEQNRMYWAKQIYDILSQLQVTMATPTMSNARKPYHQLSSCFIDTVEDTLNNIYKS 327 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++KY GG+G + VR G+ I G G + GVI ++K+ NDTA AV+Q G R+G Sbjct: 328 VDNFAQVSKYGGGMGLYFGKVRANGSDIRGFEGAAGGVIRWIKLVNDTATAVDQLGVRQG 387 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 AV YL+ WH D+ EFL+LR N GDDR + HD+ A PDLF K + NA W L P Sbjct: 388 AVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDLNATWYLMCP 447 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ L D YG+E+E Y + + + R + L R +L ETG P Sbjct: 448 HEIHKIKGYHLEDFYGEEWEERYFDCVQDPRVPK----RTMVLKDLVRLILKSAVETGTP 503 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-----------------------SSEE 596 + +D N +P H G+++ SNLCTEI N + Sbjct: 504 FTFNRDHVNRMNPNAHAGMIYCSNLCTEIAQNMKALKLEESRIVEIDGESVVVNESKPGD 563 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S++L N + ++L+ I VR LDNVID+N + I AK +N +R I Sbjct: 564 FVVCNLASLSLGNIDVN---NEEELSHIIHVIVRALDNVIDLNYYPIPYAKITNRKYRPI 620 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G+ L ++ + S E ++ AD E I+++AI AS LA+E+G+YS F GS W Sbjct: 621 GLGVSGYHHMLVKQNLRFESEEHLQYADTLFEKINYYAIQASTALAREKGSYSMFAGSDW 680 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G + W L ++V+ GMRN+ MAIAPT++ + I Sbjct: 681 QSG--------------AYFTKRGYTSDAWSRLFRQVREQGMRNAWLMAIAPTSSTSIIA 726 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G + +DP Y++ V +L R W Sbjct: 727 GTTAGVDPIMNKYYLEEKKGSMIARVAP----DLDARTFW-------------------- 762 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 ++ A ID W++ SA RQ+ IDQAQS+NLY+ +E + +++ +Y AW Sbjct: 763 -------LYKNAHLIDQEWVVRSAGIRQRHIDQAQSVNLYITNEFTLRQVLMLYIHAWEY 815 Query: 896 GLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 816 GVKTIYYVRSKS 827 >gi|288928560|ref|ZP_06422407.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331394|gb|EFC69978.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 839 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 269/913 (29%), Positives = 434/913 (47%), Gaps = 119/913 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG + FD KI+ AI K+F++ V+D I ++ ++ H Sbjct: 1 MDITKRNGSMAPFDREKIATAIKKSFISTGRPI------VEDEIHDVAIAVEQVIITHP- 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +++E IQD+VE SLMQ G + + Y+L+R +R++ R + + A ++ Sbjct: 54 --AKLNVECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNRIANTLQQAEIAPVL 111 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 G F + L +++ + + + ++ D +ALI ++ Sbjct: 112 K--GIAADFEPE------------LYPIAA--LAEKFMGFVKADMNGRDKLSALIKAAVE 155 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L E PN+ + AR L +L+R++ T + ++ +++ L + + Sbjct: 156 LTSAEAPNWEFIAARLLSYRLQRDLETFEQAEDIQSFAQKVRHLASQ--------NLYGA 207 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + ++ + +L A+ + ER+ Y GL +L RY + +E Q F+ +A+ Sbjct: 208 YIVDAYTENELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQEMFLGIAL 267 Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+ E + +FY++LS +TPTL N+ QLSSCF+ TVPD L GI+ Sbjct: 268 HLAMNEGENRLHWVKKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPDSLEGIYR 327 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR G I G G + GV+ ++K+ NDTAVAV+Q G R+ Sbjct: 328 SIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAVDQLGVRQ 387 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K Q N W +F Sbjct: 388 GAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAQQDLNQDWHMFC 447 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P+EV L D YG+ +E Y + R ++ + R +L ETG Sbjct: 448 PNEVLTTRGYSLEDFYGEAWEEKYHECVAD----KRLSRRTMTIKDVIRLVLRSAVETGT 503 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596 P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 504 PFTFNRDIVNRANPNGHNGIIYCSNLCTEIAQNMKAIEEVSNEVLTKDGDTVVVRTVKPG 563 Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S++L + L + T VR LDNVID+N + + A+ +NH +R+ Sbjct: 564 DFVVCNLASLSLGNL---PLENETYLNDIVATVVRALDNVIDLNFYPVPYAQITNHRYRS 620 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+ G+ AL L I + S E ++ D+ E I+ AI AS LA+E+GAY+ F+GS Sbjct: 621 IGLGVSGYHHALALRGIKWESEEHLQFVDQVFERINRAAIEASSSLAKEKGAYAYFEGSD 680 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G + W + +RVK GMRN+ +AIAPT++ + + Sbjct: 681 WQTG--------------AYFDKRNYNSPQWQQTAQRVKAQGMRNAYLLAIAPTSSTSIV 726 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + +DP Q +++ V L R W Sbjct: 727 AATTAGLDPVMQRFFLEEKKGAMLPRVAP----ALSDRTFW------------------- 763 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A++ + W + ++ RQ+ IDQAQS+NLY+ + + ++L +Y AW Sbjct: 764 --------LYKGAYQTNQAWSMRASGIRQRHIDQAQSVNLYITNNYTMRQLLDLYLLAWQ 815 Query: 895 MGLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 816 SGVKTIYYVRSKS 828 >gi|303234657|ref|ZP_07321286.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna BVS033A4] gi|302494222|gb|EFL53999.1| ribonucleoside-diphosphate reductase, alpha subunit [Finegoldia magna BVS033A4] Length = 842 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 269/913 (29%), Positives = 437/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G + FD KI A+ KA+ +V Q+ ++++ ++ ++ Sbjct: 1 MEIKKRDGNIVDFDRLKIELAMKKAYASVGIYAE------QNELESMAQEIENTVVNKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE +L+ G +K+ + ++LYR + + R + ++I Sbjct: 55 KNHVVTVEEIQDLVELTLIDHGQYKVVKSFILYRAKHTTDRKVIEEFEKFITDDDVIEI- 113 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + I E S + + + E++ + LS+ D+ L +S Sbjct: 114 -------------IRYIQEHYDSTRYSIENLYLKFESF--VKPNLSQYDMVNLLSKASGE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L+ KE PN+ + + F+ L++ + + + +++ L E G+ Sbjct: 159 LVSKEAPNWEYIASLFMNYNLKQNIKKLEIQYDLQDFKSKIKFL--------DERGLYGS 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E D D+ L + ERD F + L ++ RY + + IE Q FM +AM Sbjct: 211 YIREVYTDDDIDELEKYMDDERDKLFTFSALDLIIKRYLIKTHDNRVIESAQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LALKE ++ A + Y+ LS +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLALKEKDRIHWAKKIYDNLSKLKVTVATPTMSNARKPFNQLSSCFIDTVPDTLEGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 INNFAQVSKHGGGMGLYFGKVRANGSDIRGFQGVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 +V YL+ WH D+ EFL LR N GDDR + HD+ + PDLF K V + W +F P Sbjct: 391 SVAVYLDVWHKDILEFLQLRTNNGDDRMKAHDVFPSVCYPDLFWKMVRDDIDGTWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ +L D YG E+E Y + E R I L R ++ ETG P Sbjct: 451 HEISVKKGYNLEDYYGDEWEKRY----NECVLDESISRRSIKVKDLVRLIIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 + +D N +P +H G+++SSNLCTEI N S Sbjct: 507 FTFNRDTVNRMNPNKHKGMIYSSNLCTEIMQNMSEIHSISETIETEDGDDIIVTKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N + ++L + TAVR LDNVID+N + +E AK +N +R I Sbjct: 567 FVVCNLASLVLGNIDVN---NDEELEEVVETAVRGLDNVIDLNFYPLEYAKYTNKKYRPI 623 Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L +I Y+ E +E AD+ E I+++AI AS ++A+E+G+Y F+GS Sbjct: 624 GLGTSGYHHCLVKNNIMYSDVEKHLEFADKLYEKINYYAIKASNKIAKEKGSYEYFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + + + W+EL +K GMRN MA+APT + + I Sbjct: 684 WENG--------------EYFKLRDYNSEKWNELYHDIKKNGMRNGYLMAVAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + ++DP +++ V Sbjct: 730 AGTTAAVDPVMSRYFLEEKKGTIVPRVAP------------------------------- 758 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + ++ A E+D +++ S RQ+ IDQ QS+N+Y+ + + + + IY +AW Sbjct: 759 GLSPQTFWLYENAHELDQNITVDATSIRQRHIDQGQSVNIYITTDYTMRTILNIYVRAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+RS+S Sbjct: 819 KGIKSIYYVRSKS 831 >gi|160947323|ref|ZP_02094490.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270] gi|158446457|gb|EDP23452.1| hypothetical protein PEPMIC_01257 [Parvimonas micra ATCC 33270] Length = 854 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 272/925 (29%), Positives = 435/925 (47%), Gaps = 122/925 (13%) Query: 19 AYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQ 78 Y F E I +++IKR+ SFD SKI AI KAF++V + + K L E+ Sbjct: 5 GYKFAEVIL-LRIIKRDLSEVSFDISKIENAIYKAFISVGDEDKKL------LSKRLAEE 57 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 +LQ + +E+IQD VE +L ++ H++ + Y+LYRE+R+ +R + + Sbjct: 58 VFESILQDKAENSSISVEEIQDYVEKTLTKNNHYETLKSYILYREKRNSLRKELNSFREY 117 Query: 139 APIAPKLKI---MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 +++ + D + + RL L V L+E Sbjct: 118 IEDESLIEVLAKIQKDFSTEGYELDRLCRKF------LSFVKPNSTLNEKI--------- 162 Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 LI +S L KE PN+ ++AR K+ E++ + ++Q L Sbjct: 163 ----ELLIKASSELTSKENPNWEYISARIYAYKIHNEIVNYEKEWHIVDFKSKIQVL--- 215 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSR 313 + + + E+ D+ L + RD F Y L ++Y RY + + Sbjct: 216 -----TKASLYGEYILENYSSDDIDELEKYIDNSRDELFTYSSLDLVYKRYLICDSHKKV 270 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 IE Q FM +AM LA+ E ++ A + Y++LS+ +TPT+ N+ QLSSCF+ Sbjct: 271 IETMQEMFMGIAMHLAIPEKDRVSFAKKVYDVLSNLKATVATPTMSNARKPFHQLSSCFI 330 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+AND Sbjct: 331 DTVPDTLKGIYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWIKLAND 390 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TAVAV+Q G R+G+ YL+ WH D+ EFL+LR N GDDR + HD+ A P+LF + Sbjct: 391 TAVAVDQLGVRQGSCAVYLDVWHRDIPEFLNLRTNNGDDRMKAHDVFPAICFPNLFWRLA 450 Query: 494 TQ--NAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + N+ W LF P EV ++ D YG+E+E Y ++ + R ++ L Sbjct: 451 KENINSNWYLFCPHEVKEVMGFCLEDFYGEEWEEKYRLCIKEPRLDK----RILTVKDLV 506 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595 + +L ETG P+I +D N +P H G+++SSNLCTEI N Sbjct: 507 KLILKSQVETGTPFIFNRDNANNANPNSHKGMIYSSNLCTEIMQNMKEILDVEDKILQID 566 Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + VCNL S+ L + + +++ + T +R LDNVID+N + Sbjct: 567 GEDHVVTDVKAGDFVVCNLASLVLGNI---DLKNDEEMEFVVSTMIRALDNVIDLNYYPT 623 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 AK +N +RAIGLG G+ AL I + + E +E D+ E I++ AI S ++ + Sbjct: 624 PFAKITNAKYRAIGLGTSGYHHALVKNKIMWQTEEHLEFMDKVYEKINYFAIKESSKIGE 683 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G+Y F+GS W G + W ELK++V G+RN+ Sbjct: 684 EKGSYKYFEGSEWQNGK--------------YFEKRDYNSKEWIELKEKVSKNGLRNAYL 729 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +A+APT + + I G + +DP +++ V +L W Sbjct: 730 LAVAPTGSTSIIAGTTAGVDPVMMRYFLEEKKGSIIPRVAP----DLTPETFW------- 778 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 ++ A E+D W I++ RQ+ IDQ QSLNLY+ + Sbjct: 779 --------------------LYENAHEVDQTWSIKAGGVRQRHIDQGQSLNLYITTDYKM 818 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRS 907 ++ + + +GLK+ YY+RS+S Sbjct: 819 SQILKLLILSCEVGLKSIYYIRSKS 843 >gi|282881359|ref|ZP_06290038.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella timonensis CRIS 5C-B1] gi|281304765|gb|EFA96846.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella timonensis CRIS 5C-B1] Length = 839 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 259/915 (28%), Positives = 430/915 (46%), Gaps = 123/915 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG +D KI+ AI K+F++ + + I + + + ++ Sbjct: 1 MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDA------TIYQMVQSVEDIVCTNHI 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 ++E IQD+VE +LM++G++ + ++L+R +R+++R Sbjct: 55 KQ---NVESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRI------------- 98 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + + +++ + D S +++ + G++ ++ ALI ++ Sbjct: 99 -----TEDLQDEHITEVLKHIAADFTDKEYSILLLIDKYASFSKAGMTATERMDALIKAA 153 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 L +E P + + AR L +L + + + + + +M+ L + + Sbjct: 154 VELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFL--------TDRNLY 205 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 + + ++ A + R+ Y GL++L RY + + + IE Q F+ + Sbjct: 206 GAYILQQYSKAEIEQAATFMDASRNHLLNYSGLELLIKRYVIRNFDNNPIESVQEMFLGI 265 Query: 325 AMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 A+ LA+ E + + FYN+LS +TPTL N+ QLSSCF+ TVPD L GI Sbjct: 266 ALHLAMNEPQDRMMWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEGI 325 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 326 YRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVNDTAVAVDQLGV 385 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W + Sbjct: 386 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEENLNQDWYM 445 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 F P+EV +L D YG+E+E Y + R + + R +L ET Sbjct: 446 FCPNEVMTAKGYNLEDYYGEEWEKRYWDCVADTTISR----RIMPIKEIVRLILRSAVET 501 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596 G P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 502 GTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTEEDDTVVVRTVK 561 Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNL S++L D ++ + + VR LDNVID+N + + AK +N T+ Sbjct: 562 PGDFVVCNLASLSLGHL---KLEDETEMREVVSSVVRALDNVIDLNFYPLPFAKITNRTY 618 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG+ G+ AL + I + S E + D+ E I+ AI AS ++A+++G+Y F+G Sbjct: 619 RSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIAKQKGSYKYFEG 678 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G + + + W L K+V GMRN+ +AIAPT++ + Sbjct: 679 SDWQTG--------------EYFTKRQYTSPEWQALAKKVSQQGMRNAYLLAIAPTSSTS 724 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + +DP + +++ V L Sbjct: 725 IIAATTAGVDPVMKRFFLEEKKGAMLPRVAPSL--------------------------- 757 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 D ++ +A+ ID W + +A RQK IDQAQS+NLY+ + + ++L +Y A Sbjct: 758 ----SDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNYTMRQLLGLYTLA 813 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 814 WHCGVKTIYYIRSKS 828 >gi|282879358|ref|ZP_06288102.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella buccalis ATCC 35310] gi|281298555|gb|EFA90980.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella buccalis ATCC 35310] Length = 839 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 266/916 (29%), Positives = 430/916 (46%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG +D KI+ AI K+F++ + + I + + + ++ Sbjct: 1 MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDA------TIYQMVQSVEDIVCTNHI 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAA---QSHSKSDAPIAPKL 145 ++E IQD+VE +LM++G++ + ++L+R +R+++R + DA I L Sbjct: 55 KQ---NVESIQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRIAEDLQDAHITEVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D T ++ L G++ ++ ALI + Sbjct: 112 KHIAADFTDKEYSILLLIDKYASFSK-------------------AGMTATERMDALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L +E P + + AR L +L + + + + + +M+ L + + Sbjct: 153 AVELTTQEAPEWEFIAARLLNYQLNKRIARFEDSEGLMSLYDKMKFL--------TDRNL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + + ++ A + R+ Y GL++L RY + + S IE Q F+ Sbjct: 205 YGAYILQQYSKAEIEQAATFMDASRNHLLNYSGLELLIKRYVIRNFDNSPIESVQEMFLG 264 Query: 324 VAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + FYN+LS +TPTL N+ QLSSCF+ TVPD L G Sbjct: 265 IALHLAMNEPQDRMTWVQRFYNMLSKLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W Sbjct: 385 VRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEENLNQDWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +F P+EV +L D YG+E+E Y + R + + R +L E Sbjct: 445 MFCPNEVMTAKGYNLEDYYGEEWEKRYWDCVADTSISR----RIMPIKEIVRLILRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 501 TGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQIEEVSNEIRTEEGDTVVVRTV 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D ++ + + VR LDNVID+N + + AK +N T Sbjct: 561 KPGDFVVCNLASLSLGHL---KLEDETEMKEVVSSVVRALDNVIDLNFYPLPFAKITNRT 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + I + S E + D+ E I+ AI AS ++A+++G+Y F+ Sbjct: 618 YRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAIEASSDIAKQKGSYKYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + + + W L K+V GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------EYFTKRQYTSPQWKALAKKVSQQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I + +DP + +++ V L Sbjct: 724 SIIAATTAGVDPVMKRFFLEEKKGAMLPRVAPSL-------------------------- 757 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D ++ +A+ ID W + +A RQK IDQAQS+NLY+ + + ++L +Y Sbjct: 758 -----SDKTYWVYKSAYLIDQSWSMRAAGIRQKHIDQAQSVNLYITNNYTMRQLLGLYTL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWHCGVKTIYYIRSKS 828 >gi|257067185|ref|YP_003153441.1| ribonucleotide-diphosphate reductase subunit alpha [Anaerococcus prevotii DSM 20548] gi|256799065|gb|ACV29720.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus prevotii DSM 20548] Length = 842 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 274/913 (30%), Positives = 437/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G F+ KI +AI KAF +V+ S+ ++ ++ ++ + + + Sbjct: 1 MEIIKRDGTRADFEREKIEKAIAKAFYSVD------SMISEEDLRKISSKIEKTIKEKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + V +E++QD VE +L+ +++ + ++LYR + + R L I+ Sbjct: 55 ADHTVTVEEVQDLVELTLIDENYYREVKSFILYRAKHNMDRKVIGDFSKYIDDKNILNII 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 T + + +E + + ++E D+ A+ ++ Sbjct: 115 ----TEVQADFDNQRYPIESLFFKFESF------------LKANMTEEDMLKAITRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARFL++++ E+ + + +++ L EEG+ Sbjct: 159 LTSKEAPDWEIIAARFLMQEINYEIEKSEERYELFDFKSKIEFL--------TEEGLYGS 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326 + E+ ++ L + + RD F Y GL ++ RY + G +E Q FM +AM Sbjct: 211 YILENYTGEEIDELEAYMDFSRDKIFTYSGLDLVRKRYLITNHKGDILEKVQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIPEKDKIGFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+G Sbjct: 331 VTNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504 AV YL+ WH D+ EF+ LR N GDDR + HD+ +PDLF + R NA W +F P Sbjct: 391 AVAVYLDIWHKDIPEFMGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450 Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE Y ++ + R +S + R ++ ETG P Sbjct: 451 HEVEKKYGRALEDTYGEEFEEFY----KKLVADKDISRRTMSVKDMVRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 ++ +D N +P +H G+++SSNLCTEI N S E Sbjct: 507 FVFNRDAVNRLNPNKHKGMIYSSNLCTEIAQNMSPSESISTEIVDENGDTIIVNKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L NN +L T+RT VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGKVDVNNS---AELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPYASPEAV-EIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + + EA E D E I+F+AI S+E+A+E+GAYS F+GS Sbjct: 624 GLGTSGYHHMLVKNDISWQNEEAHGEFVDRVYEDINFYAIKESMEIAKEKGAYSCFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + W++L+ VK G+RN MAIAPT + + I Sbjct: 684 WETG--------------AYFDLRDYKSERWEKLRAEVKENGLRNGYLMAIAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ V L + Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A +ID + A RQK IDQAQS+N+Y+ E + ++L IY AW Sbjct: 767 --------LYENAHDIDQNISMRMAGVRQKHIDQAQSVNIYITTEYTMRQLLNIYITAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+R +S Sbjct: 819 AGVKSIYYVRGKS 831 >gi|227501019|ref|ZP_03931068.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227216792|gb|EEI82190.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 842 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 280/913 (30%), Positives = 441/913 (48%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G SF+ KI +AI KAF +V+ SI +D ++ ++++ + + Sbjct: 1 MEIIKRDGTRASFERVKIEKAIAKAFNSVD------SIISKDDLEKMSKRIEETIREKYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 IV +E+IQD VE +L+ +++ + ++LYR + + R L I+ Sbjct: 55 KDHIVSVEEIQDLVELTLIDENYYREVKSFILYRAKHNMDRKIIGDFSKYISDKEVLAII 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 F+++R + S + E++ + ++E D+ A+ ++ Sbjct: 115 TR--IQTEFDNQR------------YPIESLLFKFESF--LKANMTEEDMLKAITRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARFL+ ++ E+ + + ++ L E G+ + Sbjct: 159 LTSKEAPDWEIIAARFLMYQINLEIEKSEERYELFDFKAKIAFL--------TENGLYGK 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAM 326 + E+ ++ L + + + RD F Y GL ++ RY + G IE Q FM +AM Sbjct: 211 YILENYSKDEIDELESYMDFTRDDIFTYSGLDLVKKRYLITNHQGDLIEKVQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIPEKDKISFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+G Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK--RVTQNAGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ +PDLF + R NA W +F P Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWRLTRDDINADWHMFDP 450 Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE Y ++ + R +S + R ++ ETG P Sbjct: 451 HEVEKKYGKAIEDTYGEEFEDFY----KKLVEDKDISRRTMSVKDMVRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 +I +D N +P +H+G+++SSNLCTEI N S E Sbjct: 507 FIFNRDAVNRLNPNKHMGMIYSSNLCTEIAQNMSPSESVSTEIIDENGDTIIVNKTRPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N D +L T+RT VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGKVDVN---DASELEETVRTVVRALDNVIDLNYYPTPYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPYAS-PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + + E D E I+++AI S+E+A+E+GAYS F+GS Sbjct: 624 GLGTSGYHHMLVKNDISWQNEQAHGEFVDRVYEDINYYAIKESLEIAKEKGAYSCFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + W+EL+ +K G+RN MAIAPT + + I Sbjct: 684 WESG--------------AYFDLRDYKSQRWEELRGEIKRHGLRNGYLMAIAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ V L + Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + A +ID + A RQ+ IDQAQS+N+Y+ E S ++L IY AW Sbjct: 767 --------FYENAHDIDQNISMRMAGIRQRHIDQAQSVNIYITTEYSMRQLLNIYISAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+R +S Sbjct: 819 SGVKSIYYVRGKS 831 >gi|260912587|ref|ZP_05919118.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633299|gb|EEX51458.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 839 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 272/916 (29%), Positives = 429/916 (46%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG + FD KI+ AI K+F++ V+D I+++ ++ + Sbjct: 1 MDITKRNGSMAPFDREKIATAIKKSFISTGRTI------VEDEIRDVAIAVEQVIITNPA 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 ++E IQD+VE SLMQ G + + Y+L+R +R++ R + IAP L Sbjct: 55 KQ---NVECIQDEVERSLMQRGFYAEAKSYILFRWQRTEQRKYLNKIANTLQQPEIAPAL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K + D + + + + ++ D +ALI + Sbjct: 112 KGIAADFEPELYPIA-------------------ALAEKFMGFVKADMNGRDKLSALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E PN+ + AR L +L+R++ + ++ +++ L + + Sbjct: 153 AVELTSAEAPNWEFIAARLLSYRLQRDLEAFEQAEDIQSFAQKVRHLASQ--------NL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + E+ D +L A+ + ER+ Y GL +L RY + +E Q F+ Sbjct: 205 YGTYIAEAYTDGELQQAASFIDEERNKLLNYSGLDLLIKRYVIRSFAHKPVESVQEMFLG 264 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + +FY++LS +TPTL N+ QLSSCF+ TVPD L G Sbjct: 265 IALHLAMNEGENRLHWVRKFYDMLSRLEVTMATPTLANARKPFHQLSSCFIDTVPDSLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G I G G + GV+ ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFKGAAGGVVRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V Q N W Sbjct: 385 VRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMVQQDLNQEWH 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +F P+EV L D YG E+E Y + R ++ + R +L E Sbjct: 445 MFCPNEVLTTRGYSLEDFYGSEWEEKYRECVAD----KRLSRRTMTLKDVIRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N E Sbjct: 501 TGTPFTFNRDIVNRANPNAHNGIIYCSNLCTEIAQNMQPIEEVSNEVVTKDGDTVVVRTV 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L + L + T VR LDNVID+N + + A+ +NH Sbjct: 561 KPGDFVVCNLASLSLGNL---PLENEAYLNDVVATVVRALDNVIDLNFYPVPYAQITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL L I + S + ++ D+ E I+ AI AS LA+E+G+Y+ F+ Sbjct: 618 YRSIGLGVSGYHHALALRGINWESEDHLQFVDQVFERINRAAIEASSALAKEKGSYACFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G W + +RVK GMRN+ +AIAPT++ Sbjct: 678 GSDWQTG--------------AYFEKRNYDSPQWQQTAQRVKVQGMRNAYLLAIAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + +DP Q +++ V L R W Sbjct: 724 SIVAATTAGLDPVMQRFFLEEKKGAMLPRVAP----ALSDRTFW---------------- 763 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A++ + W + +A RQ+ IDQAQS+NLY+ + + ++L +Y Sbjct: 764 -----------LYKGAYQTNQAWSMRAAGIRQRHIDQAQSVNLYITNNYTMRQLLDLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWQSGVKTIYYVRSKS 828 >gi|289548461|ref|YP_003473449.1| ribonucleoside-diphosphate reductase subunit alpha [Thermocrinis albus DSM 14484] gi|289182078|gb|ADC89322.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermocrinis albus DSM 14484] Length = 766 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 276/807 (34%), Positives = 425/807 (52%), Gaps = 87/807 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ G + ++ ++++ AC+GL DV + + D ++ +++ LI Sbjct: 1 MKVIKRSGRREELDISKIRIVIDFACAGL-DVDPLELEMDAQIQFRDNITTREIQQLLIR 59 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF----CRY 259 ++ + E P++ V AR LL L ++V K + + + + PE F Y Sbjct: 60 TAAEKVSPETPDWTYVAARLLLYDLYKDVGHLRGYKVKDKINGKYRPYNPESFYHLIKTY 119 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318 + G+ L E+ ++ LA +K ERD F Y G+++L DRY + G IE+PQ Sbjct: 120 TDRGIYGGYLLENYTKEEIDQLAQYIKPERDLLFNYTGIKVLSDRYLVRDEEGRIIELPQ 179 Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 +M +AM L + E E+ + +FY++LS + +TPT+ N+ H QLSSCF+ TV Sbjct: 180 EMYMLIAMTLGIAEKKEERLEWVKKFYDVLSQHYVSLATPTMMNARRTHTQLSSCFVLTV 239 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY IF +Q+ A ++K++GGLG +R GA I G S GV+P +K+ ND V Sbjct: 240 DDDLYDIFDNVQKAAQISKFAGGLGIYLGKIRATGAPIRKFRGASSGVLPVVKIINDVMV 299 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+Q G RKG+ L+ WH DV +FL+++ N GD+R++ HD++ A IPDLFM+RV + Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVLDFLEVKTNVGDERKKAHDIHPAVAIPDLFMERVRRR 359 Query: 497 AGWTLFSPDEVS------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 WTL P +L D YGKEFE Y E++ R++ A LW+++L Sbjct: 360 EKWTLMDPYYCKKVKDGKNLEDFYGKEFEEVYLRLEKEL---PPYAKREVDAWELWKRLL 416 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595 T++FETG P+I F+D N +P +H G+V+SSNLC EI N S Sbjct: 417 TVIFETGEPYIFFRDTANYLNPNKHCGMVYSSNLCMEIIQNMSVTTHEEDILEEDGRITH 476 Query: 596 -----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 + VCNLGSINL + + LA + VR+LDNVI IN + I++A+ +N Sbjct: 477 RKRSGDVVVCNLGSINLGLVYTA-----EDLAKVMPVLVRMLDNVISINFYAIKEAEYTN 531 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +RAIG+G+ + L I + S E ++ AD E I+++AI AS +LA+ERG Y Sbjct: 532 KRYRAIGIGVSNYHYCLVKNGIQWESEEHIKFADALFERIAYYAIKASCDLAKERGKYPL 591 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F GS W +G+ G E + ++ + L W L K VK G+RN +A+ PT Sbjct: 592 FDGSDWSKGI----FFGRTPEENQQESVKNGNHLDWIGLAKEVKEHGLRNGYLLAVMPTG 647 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + + I G + S+DP + Y + NMSG Sbjct: 648 STSLIIGATASVDPIFAKFYKEENMSGI-------------------------------- 675 Query: 831 IGNIERIPDDLKKI---HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKL 885 + ++P ++KK + +A+ ID W I +A+ RQKWIDQ+QS NLY+ ++ G L Sbjct: 676 ---LPQVPPEIKKYFWHYKSAYHIDQEWSIRAAAARQKWIDQSQSFNLYIDPEKIDGPTL 732 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVE 912 +Y+ A +GLKT YY RS+S T +E Sbjct: 733 SHLYQLAHQLGLKTVYYCRSKSITDIE 759 >gi|210631891|ref|ZP_03297103.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279] gi|210159816|gb|EEA90787.1| hypothetical protein COLSTE_00993 [Collinsella stercoris DSM 13279] Length = 919 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 277/974 (28%), Positives = 428/974 (43%), Gaps = 148/974 (15%) Query: 12 EDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGA--------- 62 E L + KR+G ++P KI A+ +AF V G Sbjct: 5 ESGASVLERTAAGV-----IRKRDGRTEPYEPGKIIEAMRRAFADVYGDAGWQRSGTQAA 59 Query: 63 -----------SRSIRVQDIIKNLTEQ-----------TVTRLLQHNKSALIVHIEDIQD 100 ++ + TE+ + + + ++ I +EDIQD Sbjct: 60 ANDQRPDAPAGPDGQLSRERSEAHTERPAADQEDELLALLAMVERSMSTSAIQSVEDIQD 119 Query: 101 QVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK---LKIMMDDGTLISF 157 VE +LM+ GH ++ + Y+LYR R++ RAA+ SD + L + D ++ Sbjct: 120 LVERALMERGHFEVAKNYILYRHHRAEKRAARLELASDVAVDGVDDVLARIQRDFPEEAY 179 Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNY 216 + L +G E ALI ++ L +E P + Sbjct: 180 DLAVLSARFRTFTG-------------------EGQDEPARLEALIRAAIELTSQEAPRW 220 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + AR R++ + + L ++G+ + + Sbjct: 221 EFIAARLRDFAFARDLAAARSALGIETFSQLIHHL--------TDQGLYGAYILAAYSGA 272 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET-- 333 +L A + RD F Y GL +L RY +H + + +E PQ F+ +A+ LA+ E Sbjct: 273 ELDQAATYMDPSRDELFTYSGLDLLIRRYVIHGHDHTPLESPQEMFLGIALHLAMNEPPA 332 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 ++ FY++LS +TPT+ N+ QLSSCF+ TVPD L GI+ ++ A + Sbjct: 333 QRLAWVRRFYDMLSRLEVTMATPTMSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQV 392 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +KY GG+G VR G I G G + GVI +++V NDTAVAV+Q G R+GAV YL+ Sbjct: 393 SKYGGGMGMYLGKVRATGGSIRGFEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLD 452 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV---- 507 WH D+ EFL+LR N GDDR + HD+ A PDLF + + + W L P ++ Sbjct: 453 AWHRDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDLFWRMAEESLDQQWHLMCPHDILTIK 512 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R I L R +L ETG P+ +D Sbjct: 513 GYALEDSYGEEWERRYRDCVADPRIP----TRTILIKDLVRLILKSAVETGTPFAFMRDT 568 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603 N +P H GV++ SNLCTEI N+S + VCNL Sbjct: 569 VNRANPNSHEGVIYCSNLCTEIAQNTSAIQEVTREVRTEDGDTVVVTTTRPGDFVVCNLA 628 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S++L D + I TAVR LDNVID+N + + A+ +NH +R+IGLG+ G+ Sbjct: 629 SLSLGRLPVE---DDAAMGRVIETAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGY 685 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD------ 717 L + + S E + + DE E I++HAI AS LA+ERGA F+GS W Sbjct: 686 HHMLARRGVSWESEEHLRLVDEVFERINYHAICASERLAEERGANGVFEGSEWQSGAYFA 745 Query: 718 -QGVFPIDSIGLLAEVRDELAMNRTS--RLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 +G P+ G E + + W EL RV G+RN+ +A+APT++ + Sbjct: 746 KRGYCPLPCDGSEPEAASAVVTREGAIGSKRWGELAARVAEHGVRNAYLLAVAPTSSTSI 805 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + IDP + +++ V Sbjct: 806 LSGTTPGIDPIMRKFFLEEKKGAMLPRVAP------------------------------ 835 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 + + A I+ W I +A RQ+ IDQAQS+NLY+ ++ + +++ +Y AW Sbjct: 836 -ELSPQTYWYYKPAHYINQHWSIRAAGMRQRHIDQAQSMNLYITNDYTLRQVLDLYIGAW 894 Query: 894 LMGLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 895 RQGVKTVYYVRSKS 908 >gi|227485719|ref|ZP_03916035.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] gi|227236274|gb|EEI86289.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] Length = 842 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 274/921 (29%), Positives = 440/921 (47%), Gaps = 116/921 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G F+ KI RAI KAF +V+ S + ++ + ++ V + + Sbjct: 1 MKIIKRDGSKVDFELEKIKRAIFKAFKSVD------STITDEKLEYIAQKIVGTIEEKFP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E++QD VE SL+ +++ + ++LYR + + R S ++I+ Sbjct: 55 VDHVVTVEEVQDLVELSLIDENYYREVKSFILYRAKHNMDRKVISDFTKYVSDKDLMEII 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 F+S+R + S E++ +++ ++ A+I ++ Sbjct: 115 SK--VQREFDSQR------------YPIESLYFKFESFTK--PEMNDKEVLDAVIRAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARFL K+ E+ + +++ L E+G+ Sbjct: 159 LTSKEAPDWEIIAARFLAYKINLEIRQEEERYDIYDFKSKIRFL--------TEKGLYGS 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E+ ++ L L Y+RD F Y GL ++ RY + +G +E Q FM +AM Sbjct: 211 YILENYSSAEIDELEKHLDYDRDDIFTYSGLDLIRKRYLITSYDGRLLEKVQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIPEEDKVSFAKRLYDILSTLKATMATPTMTNARKPFNQLSSCFIETVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+G Sbjct: 331 ITNFAEVSKHGGGMGLYFGKVRANGSDIRGFEGVAGGVIRWIRLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ +PDLF K+V N W +F P Sbjct: 391 AVAVYLDIWHKDMPEFLGLRTNNGDDRMKAHDVFPGVCVPDLFWKQVKNNMEGDWYMFDP 450 Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE Y ++ + R + + R ++ ETG P Sbjct: 451 HEVEKKYGRAIEDTYGEEFEEFY----KKLVDDKEISRRIMPIKDMVRLLIKSWSETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 +I +D N +P +H G+++SSNLCTEI N S E Sbjct: 507 FIFNRDLVNKYNPNKHKGIIYSSNLCTEIAQNMSPSETVSTEIVTEDGDVVIVNKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N + +L T+RT VR LDNVID+N + A+ +N +RAI Sbjct: 567 FVECNLASLTLGKLDVN---NPKELEETVRTVVRALDNVIDLNYYPTPYAEVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + E+ D E I+++AI SVE+A+++G+Y F+GS Sbjct: 624 GLGTSGYHHMLVKNDIRWSDEKAHAELVDRVYEDINYYAIKESVEIAKDKGSYKVFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G + D + W++L + VK G+RN MAIAPT + + I Sbjct: 684 WQSGAYFTD--------------RDYTSERWEKLAEDVKKYGLRNGYLMAIAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ V L + Sbjct: 730 SGTSAGVDPIMSRYFLEEKKGAIVPRVAP---------GLTTKTFW-------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A +ID + A RQ+ +DQAQS+N+Y+ E + +++ +Y AW Sbjct: 767 --------LYENAHDIDQNISMRMAGIRQRHLDQAQSVNIYITTEYTMRQILNVYLTAWE 818 Query: 895 MGLKTTYYLRSRSATSVEKST 915 G+K+ YY+R +S E T Sbjct: 819 SGVKSIYYVRGKSLEVEECDT 839 >gi|293401950|ref|ZP_06646090.1| ribonucleoside-diphosphate reductase, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304608|gb|EFE45857.1| ribonucleoside-diphosphate reductase, alpha subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 835 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 278/915 (30%), Positives = 438/915 (47%), Gaps = 129/915 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR+G + +FD K+ +A+ KAF+A D+ + +Q + Q + Sbjct: 3 MKIIKRDGTIQTFDSEKMIQAMKKAFVA-------------DVPMDQLKQIAMEITQEIQ 49 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRA---AQSHSKSDAPIAPKL 145 + V +EDIQD VE LM + + Y+LYRE+R + R H D + P Sbjct: 50 GSAKVSVEDIQDLVEQKLMAYQFYNEAKAYILYREKRKEKRQMLLELCHEVQDEKLLPIF 109 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D +++ L + + + + + L+ + Sbjct: 110 MQIQKDFD-ETYDLHALYIKFHSF-------------------LKETMGHEERLQMLMKA 149 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 LI KE P + + ARFL +L +E+ + + + + ++Q L ++G+ Sbjct: 150 CVELISKETPKWEYIAARFLSYQLHQEINARMKQLQLTSFYEKIQYLS--------KQGL 201 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMR 323 + ++ ++ L +K ERD F Y GL+++ RY L + +E PQ FM Sbjct: 202 YGAYMLDAYQKEEIDELKRYVKDERDALFTYSGLELVVKRYLLRTHDLQLMETPQEMFMG 261 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 +AM LA+ ET + A + Y++LS+ +TPT+ N+ + QLSSCF+ TV D L I Sbjct: 262 IAMHLAIPETNRVYWAKQIYDILSTLKVTMATPTMANARKPYHQLSSCFIDTVADTLANI 321 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++KY GG+G + VR G+ I G G + GVI ++K+ NDTA AV+Q G Sbjct: 322 YKSIDNFAQISKYGGGMGLYFGKVRANGSDIRGFKGAAGGVIRWIKLVNDTATAVDQLGV 381 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501 R+GAV YL+ WH D+ EFL+LR N GDDR + HD+ A PDLF K + NA W L Sbjct: 382 RQGAVAVYLDAWHKDLPEFLNLRTNNGDDRMKAHDVFPAICYPDLFWKMAKEDLNATWYL 441 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG+E+E Y + A + R++ L R +L ET Sbjct: 442 MCPHEIGKVKGYQLEDFYGEEWEERYFDCVNDARISK----REMILKDLVRLILKSAVET 497 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593 G P+ +D N +P H G+++ SNLCTEI N S Sbjct: 498 GTPFTFNRDQVNKMNPNGHKGMIYCSNLCTEIAQNMSAITLTEPQIIKVDEEEIVVNKSK 557 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S++L + +L+ I T VR LDNVID+N + I A+ +N + Sbjct: 558 PGDFVVCNLASLSLGNIDVT---NKQELSHIIHTIVRALDNVIDLNYYPIPYAEITNRQY 614 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 RAIGLG+ G+ L + + S E ++ D E I+ +AI AS LA+E+G+Y FKG Sbjct: 615 RAIGLGVSGYHHMLVKQGLRFESEEHLQFVDTLFETINAYAIQASNVLAKEKGSYQYFKG 674 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S WD G W +L + V T GMRN+ +A+APT++ + Sbjct: 675 SDWDSG--------------AYFTKRGYQNECWQKLAQDVHTYGMRNAYLLAVAPTSSTS 720 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S +DP +++ V +L + W Sbjct: 721 IIAGTSAGVDPIMNKYFLEEKKGSMIARVAP----DLNPQTFW----------------- 759 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 ++ A +I W++++A RQ+ IDQAQS+NLY+ +E + + + +Y QA Sbjct: 760 ----------LYKNAHQIQQEWIVKAAGIRQRHIDQAQSVNLYITNEFTLRTVLNLYIQA 809 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS++ Sbjct: 810 WENGVKTLYYVRSKA 824 >gi|332297026|ref|YP_004438948.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema brennaborense DSM 12168] gi|332180129|gb|AEE15817.1| ribonucleoside-diphosphate reductase, alpha subunit [Treponema brennaborense DSM 12168] Length = 844 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 274/915 (29%), Positives = 430/915 (46%), Gaps = 118/915 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKR G ++D KI AI KAF + ++R L +L + Sbjct: 1 MEIIKRTGKTETYDGQKIINAITKAFKSTGRDVPQTTLR------ALLTSVEEKLDRE-- 52 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +E IQD VE +LM+S + Y+L+R++RS+ RAA+ + +++ Sbjct: 53 --TVKSVEKIQDLVEQALMESLFFAEAKSYILFRQKRSEFRAARKELCA------LIRVD 104 Query: 149 MDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 +G ++ ++ L+ +S+K V + ++ES+ ALI ++ Sbjct: 105 SGEGET-PLEKVFSGIQKSYQDESYSLKTLSAKYVSFSK-----ENMNESERLAALIRAA 158 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 L+ E P + + R L R + + K+ + +++ L E G+ Sbjct: 159 SELVSPEAPKWEFIAGRLLNYSFRHRLRADTERLGLKSFYDKLEYL--------TEAGMY 210 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRV 324 + +S ++ A + ERD F Y GL +L RY + +E PQ F+ + Sbjct: 211 GSYILKSYTKAEIEEAAAFIVPERDDLFTYSGLDLLLKRYVIRTGKHVPLETPQEMFLGI 270 Query: 325 AMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 A+ LA+ E E+ FY++LS +TPTL N+ + QLSSCF+ TVPD L GI Sbjct: 271 ALHLAMNEPAERMNWVRRFYDMLSRMEVTMATPTLANARKPYHQLSSCFVDTVPDSLNGI 330 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++K+ GG+G + VR G+ I G G + G+I ++++ NDTAVAV+Q G Sbjct: 331 YRSIDNFAKVSKFGGGMGMYFGKVRAAGSAIRGFEGAAGGIIRWIRLVNDTAVAVDQLGV 390 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R GAV YL+ WH D+ EFL++R N GDDR + HD+ PDLF K +N W L Sbjct: 391 RAGAVAVYLDAWHRDLPEFLNIRTNNGDDRMKAHDVFPGVCYPDLFWKMAKENLDQDWYL 450 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D +G+E+E Y + + R +S + R +L ET Sbjct: 451 MCPHEICTVKGYHLEDFWGEEWEKRYADCVHDNRIAK----RAVSVKDIVRLVLKSAVET 506 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596 G P++ +D N +P H G+++ SNLCTEI N S E Sbjct: 507 GTPFVFNRDTVNRANPNAHRGMIYCSNLCTEIAQNMSGIESVSTQITVQNGETVVVHTTK 566 Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNL S++L D L S +RTAVR LDNVID+N + + A+ +N + Sbjct: 567 PGSFVVCNLASLSLGNL---PLEDTAYLQSVVRTAVRALDNVIDLNFYPVPYAEITNRAY 623 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G+ AL I + S E + AD E I+ A+ AS + A E+GAYS F G Sbjct: 624 RPIGLGVSGWHHALAKRAIKWESDEHLAFADRVFETINRAAVEASSDNAAEKGAYSCFDG 683 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G A W L ++V+ GMRN+ +A+APT++ + Sbjct: 684 SDWQTG--------------AYFAKRGYDSAEWRALAQKVRAQGMRNAYLLAVAPTSSTS 729 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + IDP + +++ T Sbjct: 730 IIAGTTPGIDPVMKRWFLEEKKGYMLTRTAP----------------------------- 760 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + + + A +ID W I S RQ+ IDQAQS+NLY+ +E + +++ +Y A Sbjct: 761 --ELGPETWWYYKNAHQIDQKWSIRSCGIRQRHIDQAQSMNLYITNEYTMRQVLDLYLLA 818 Query: 893 WLMGLKTTYYLRSRS 907 W G+K+ YY+RS+S Sbjct: 819 WECGVKSVYYVRSKS 833 >gi|229816570|ref|ZP_04446869.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM 13280] gi|229807905|gb|EEP43708.1| hypothetical protein COLINT_03628 [Collinsella intestinalis DSM 13280] Length = 913 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 281/943 (29%), Positives = 433/943 (45%), Gaps = 118/943 (12%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAF-------MAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 + KR+G FD +KI A+ +AF A G A + + E + + Sbjct: 12 IKKRDGRSERFDGAKIVEAMRRAFEDVADEQAAARGLIAGHGASAPAVSADELEALLASI 71 Query: 84 LQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ----------- 132 Q + +E +QD VE +LM+ GH ++ + Y+LYR ER++ RA + Sbjct: 72 EQAMDRDAVDCVEGVQDLVERALMERGHFEVAKSYILYRHERAEKRAVRVELARAVAGLD 131 Query: 133 ---------SHSKSDAPIAPKLKIMMDDGTLISFN--SKRLEMIVEEACSGLQDVSSKIV 181 + + + D + + R++ ++ L +S++ Sbjct: 132 GEIACEEGRAAAGVPSAADDDTAAAPKDHLAVELDRTLARIQRDFDDPAYDLAMLSAR-- 189 Query: 182 LSETYKNMY-DGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKK 239 ++ + G ALI ++ L +E P + + AR L R + T + Sbjct: 190 ----FRALTGAGQDADARLGALIRAAVELTSQEAPRWEMIAARLLDLSFMRHLAATRREL 245 Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 + E E G+ + S +L A + ERD F Y GL Sbjct: 246 GIASF--------GELVRYLTERGLYGDYILASYSVSELEEAAAFMVSERDELFAYSGLD 297 Query: 300 ILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTP 356 +L RY + + + +E PQ F+ +A+ LA+ E ++ FY++LS +TP Sbjct: 298 LLISRYVIRAHDHTPLESPQEMFLGIALHLAMNEEPTQRLAWVKRFYDMLSKLEVTMATP 357 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TL N+ QLSSCF+ TVPD L GI+ ++ A ++KY GG+G VR G I G Sbjct: 358 TLSNARKPDHQLSSCFIDTVPDSLVGIYRSIDNFAQVSKYGGGMGMYLGKVRATGGSIRG 417 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 G + GVI +++V NDTAVAV+Q G R+GAV YL+ WH D+ EFL+LR N GDDR + Sbjct: 418 FEGVAGGVIRWIRVINDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFLNLRTNNGDDRMKA 477 Query: 477 HDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQA 529 HD+ A PDLF + + + W L P ++ L D YG E+E Y + Sbjct: 478 HDVFPAVCYPDLFWRMAEESLDQDWHLMCPHDILQVKGYALEDFYGDEWERRYRDCVADP 537 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + R+I L R +L ETG P+ +D N +P H GV++ SNLCTEI Sbjct: 538 RISK----RRILIKDLVRLILKSAVETGTPFAFMRDTVNRANPNGHEGVIYCSNLCTEIA 593 Query: 590 LNSSSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N+S+ E VCNL S++L D + + I Sbjct: 594 QNTSAIEEVTREVVTEDGDTVVVTTTRPGDFVVCNLASLSLGRLPVE---DDEVMGHVIE 650 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 TAVR LDNVID+N + + A+ +NH +R+IGLG+ G+ L I + S + + ADE Sbjct: 651 TAVRALDNVIDLNFYALPYARITNHRYRSIGLGVSGYHHMLARRGISWESEDHLAFADEV 710 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS-IGLLAEVRDELAMNRTSRLP 745 E I++HAI AS LA+ERGAY F+GS W G + + E+ Sbjct: 711 FERINYHAIRASERLAEERGAYGLFEGSDWQTGAYFAKRGYCSSSGEVAEVREGAMGSER 770 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W EL + V G+RN+ +AIAPT++ + + G + IDP + +++ V Sbjct: 771 WGELAEAVARNGVRNAYLLAIAPTSSTSILSGTTPGIDPIMRKFFLEEKKGSMLPRVAP- 829 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 EL R W + A I+ W + +A RQ+ Sbjct: 830 ---ELSPRTYW---------------------------YYKPAHYIEQTWSVRAAGVRQR 859 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 IDQAQS+NLY+ ++ + +++ +Y +AW G+KT YY+RS+S Sbjct: 860 HIDQAQSMNLYITNDYTLRQVLRLYLEAWRRGVKTIYYVRSKS 902 >gi|215401540|ref|YP_002332844.1| RR1 [Spodoptera litura nucleopolyhedrovirus II] gi|209484081|gb|ACI47514.1| RR1 [Spodoptera litura nucleopolyhedrovirus II] Length = 904 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 243/783 (31%), Positives = 387/783 (49%), Gaps = 55/783 (7%) Query: 176 VSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLT 234 V ++ + +++ + G+S ++ + ++ +YA + R L+E L +V Sbjct: 170 VDVPKLMQKIKESINENGVSFEQMKLYCADVAASMTYIHYDYALLAGRILVEDLHNKVCP 229 Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294 + + + F + + L ++K+ RD+ ++ Sbjct: 230 CFVEVTNYLAQNNVVS---HEFNNLVVKHGAL--------------LNREIKHNRDYDYK 272 Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 Y G + L + Y L +N E PQ MRVA+ + + A+E Y L+S F + Sbjct: 273 YFGFKTLTNGYLLKVNDVIAERPQHMLMRVALAIHGDD---VMSAIETYQLMSLGTFTHA 329 Query: 355 TPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +PTLF +GT PQ+ SCFL + D + GI+ L E+A+++ GGLG V Sbjct: 330 SPTLFAAGTCRPQMCSCFLQCIKEDSIDGIYKTLHESALISNLGGGLGLSVQSVSAQYNG 389 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + G ++ L+V N+ V+QGGKRKGA+ AY+E WH ++ + L+LR+N G + Sbjct: 390 TTKSGG----LVSMLRVFNNMVRHVDQGGKRKGALAAYVEPWHPEIYDVLNLRRNMGSED 445 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 + D+ WIPDLFM+RV +N W+LF P + L D YG FEI YE YE+ Sbjct: 446 AKARDLMLGLWIPDLFMERVKENKEWSLFCPKKYPGLLDEYGSSFEILYEKYEK-----N 500 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 R++ A L+R ++ ETG P++ +KDPCN S Q+++G++ SNLC EI Sbjct: 501 KLYERQVKARDLFRFIVETNVETGGPYMLYKDPCNKFSNQKNLGIIKCSNLCAEIVQYCD 560 Query: 594 SEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 +ETAVCNL SI + FDY L + VR L+ +ID N + A SN Sbjct: 561 KDETAVCNLASIAVNKCVNVKTKTFDYVLLNRLTKIVVRNLNKIIDSNHYPTAGAANSNK 620 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 HR +G+G+ G A LL IPY S EA + E I F A+ AS ELA+ G Y S+ Sbjct: 621 KHRPVGVGIQGLADAFVLLDIPYDSEEARSVNYMIAETIYFSALEASCELAKIDGPYESY 680 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + S +G D+ + W +L+++++ G+RNS +A PTAT Sbjct: 681 ENSPLFRGTMHYDNYNIYPTD---------HLWNWSKLREKIQRHGVRNSLLVAYMPTAT 731 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 A I G ++S +P N+Y++ ++G+F VVN +L+ L +++ + + + +GS+ Sbjct: 732 TAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIKALVDLNIYTPELRNKILAENGSV 791 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 NI+ IP +K + TA+EI +I+ A+ R +IDQ+QSLNL++ EP+ + I+ Sbjct: 792 QNIDEIPQHVKDLFKTAWEIKSKCMIDMAADRAPFIDQSQSLNLFVAEPTYSVMSSIHFY 851 Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 W LKT YYLR++ A + T+ + T EC Sbjct: 852 TWQKQLKTGMYYLRTKPAAQATQFTVDAEAAASCGKKRKMDDDGT------------EEC 899 Query: 951 EVC 953 C Sbjct: 900 MSC 902 >gi|221633389|ref|YP_002522614.1| ribonucleoside-diphosphate reductase subunit alpha [Thermomicrobium roseum DSM 5159] gi|221155945|gb|ACM05072.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermomicrobium roseum DSM 5159] Length = 770 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 325/767 (42%), Positives = 445/767 (58%), Gaps = 24/767 (3%) Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 ++L+ + I S + P + A LLEK+ RE YPE+ Sbjct: 20 AELD-SRILSCLQQLPDRPEAEREAAALLLEKIAREADDGTPLP------------YPEH 66 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-- 313 F R++E G+ L + F L LA L RD Y L L DRY + +R Sbjct: 67 FRRFVERGIARGALDPRLRTFQLDVLARALDPARDALLGYAALATLADRYLVRDPETRQL 126 Query: 314 IEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 +E PQA FMRVAMGLAL E + A+ +Y+L+SS ++ STPTLFN+GT H QL+SC Sbjct: 127 LERPQALFMRVAMGLALVEPPETRTSWALRWYDLMSSLRYLPSTPTLFNAGTPHHQLASC 186 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +L V D L I G+ E MLAKY+GG+G T +R GA + G NG S G+IPFL + Sbjct: 187 YLAEVEDSLESILGSAYEFGMLAKYAGGIGTAVTRIRATGAPVRGINGTSGGLIPFLHLY 246 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + +++QGG+R+G +C YLE WH++VE FLDLR+N GD RRTH +NTA WIPD F++ Sbjct: 247 DALIASISQGGRRRGTMCVYLEPWHLEVEAFLDLRRNAGDPYRRTHQLNTALWIPDEFLR 306 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG--EIKVFRKISAVALWRKM 549 RV + W LF P +L DL G F Y RQA+ G + +R++ A LW + Sbjct: 307 RVETDDLWYLFDPIVAPELPDLVGAAFSERYRELCRQAEAGMLPRRAWRRLPARELWLAI 366 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 L L ETGHPW+TFKD N+RS + +GV+HSSNLCTEI L +S +E AVCNLGS+NL Sbjct: 367 LASLMETGHPWLTFKDAGNLRSQLRGIGVIHSSNLCTEIFLPTSRDEVAVCNLGSVNLAR 426 Query: 610 HFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 H D+++LA+T+R A+R LDNVID N + E+A ++N +R +GLGLMGF L Sbjct: 427 HCTPTGELDWEQLAATVRLAMRALDNVIDANLYPSERAARANQLNRPVGLGLMGFAELLA 486 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + YA P A ++AD+ EF+S+HAISAS LA+ERGA+ +F S W GV PID++ Sbjct: 487 RRAVSYAEPAAADLADQIAEFLSYHAISASCALAEERGAFPNFAFSRWAAGVLPIDTLDE 546 Query: 729 LAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 LA R + ++RT RL W+ L++RV+ GMRN MA+APTATIA + G + S+DP Y Sbjct: 547 LAADRGLPVEVDRTRRLDWEPLRQRVRR-GMRNGAVMAVAPTATIALLAGTTPSLDPYYA 605 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 N++ + +SG F VN LV EL++R LW E ++ L G + + P DL T Sbjct: 606 NVFSRQTLSGKFLEVNPILVEELRRRGLW-EQLLPGLVAARGDLRAVPGCPPDLVARFPT 664 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 A+++ IE A+R QKW+D S NLY ++ +Y AW GLK+TYY R Sbjct: 665 AYQVPAESYIEVAARVQKWVDMGVSRNLYHAADRPGQMSAVYLAAWRKGLKSTYYCFVRP 724 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +E+ST+ + V + +SC D CE CQ Sbjct: 725 RMEIEQSTVAVNKARRRPQWVQLAEREVLASD-AASCRLDGSCESCQ 770 >gi|306819884|ref|ZP_07453538.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552131|gb|EFM40068.1| ribonucleotide-diphosphate reductase alpha subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 852 Score = 552 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 264/913 (28%), Positives = 434/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + +IKR+G + FD +KI AI KAF++V + ++ + L+ + + Sbjct: 11 LNIIKRSGQIVPFDTNKIKIAIKKAFISVGMEIE------EEKLNKLSSDVEEKSKNNFP 64 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 V +E++QD VE +L++ G++ + + Y+LYR ++R K+ Sbjct: 65 KDHTVSVEEVQDLVEITLIEKGYYAVVKSYILYRASHHNLRKTLEDFTLYFDDEKIFKL- 123 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 ++++ +E L + SK + +S + + LI ++ Sbjct: 124 ----------MRKIQEDFKEDAYKLSFLYSKFTSFAK-----ENMSYDEKLSMLIRAACE 168 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P + ++ RFL +++ + + +++ L + + Sbjct: 169 LTSKEAPKWEYISGRFLALQIQNTIEKETTMLDIHSFADKIRYL--------TKNKLYGP 220 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326 + E+ D+ L L Y RD F Y GL ++ RY + +G +E PQ FM +AM Sbjct: 221 YMLENYSQEDIEELEKYLDYSRDELFNYSGLNLVAKRYLIRDTDGKILESPQEMFMGIAM 280 Query: 327 GLALKETEKE-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 L++ E +K+ A + Y+ LS+ +TPT+ N+ QLSSCF+ VPD+L GI+ Sbjct: 281 HLSIPEKDKKIHYAKKLYDALSTLKVTMATPTMSNARKCFNQLSSCFIDVVPDNLDGIYR 340 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR +G+ I G G + G+ ++K+ANDTAVAV+Q G R+ Sbjct: 341 SVTNFAQVSKHGGGMGLYFGKVRAMGSDIRGFKGVAGGITRWVKLANDTAVAVDQLGVRQ 400 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 GA Y++ WH D EFL LR N GDDR + HD+ +P+ F K + N+ W + Sbjct: 401 GACSVYIDLWHKDTPEFLQLRTNNGDDRMKAHDVFPGICVPNYFWKLAKEDLNSPWYMMC 460 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+ L D YG E+E Y + + + + R IS + R ++ ETG Sbjct: 461 PHEIETVKGYCLEDCYGDEWEEKYLDCVKDSKIDK----RVISVKDMVRLIIKSAVETGT 516 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSE 595 P+I +D N +P H G+++ SNLCTEI N + Sbjct: 517 PFIFNRDIVNKYNPNPHKGMIYCSNLCTEIAQNMEAIQSISSEVKIIDGQEIVVEMTKPG 576 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + VCNL S+ L + D+L + T +R LDNVID+N + + A+ +N +RA Sbjct: 577 DFVVCNLASLVLGNIDVK---NPDELEDIVNTVIRALDNVIDLNYYPVPYAQITNQKYRA 633 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG G+ L I + S E ++ ADE E I++ AI AS +LA+E+G+Y F+GS Sbjct: 634 IGLGTSGYHHTLVQNDIMFQSEEHLKFADELYENINYFAIKASNQLAKEKGSYKYFEGSN 693 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G + W+ELK+ V+ G+RN MAIAPT + + I Sbjct: 694 WQDGQ--------------YFTKRNYNSKRWEELKQSVEKDGIRNGYIMAIAPTGSTSII 739 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + ++DP + +++ V L + W Sbjct: 740 AGTTAAVDPVMKRYFLEEKKGQIVPRVAPSLTP----KTFW------------------- 776 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A +ID W+I+SA RQ+ IDQ+QS+NLY+ E + K++ +Y A Sbjct: 777 --------LYENAHDIDQTWVIKSAGIRQRHIDQSQSVNLYITTEYTMKQILQLYITACE 828 Query: 895 MGLKTTYYLRSRS 907 +KT YY+RS+S Sbjct: 829 QEVKTLYYVRSKS 841 >gi|256545922|ref|ZP_05473277.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256398344|gb|EEU11966.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 842 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 276/913 (30%), Positives = 431/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V KR+G V F+ KI+RAI K+F +V+ S+ + + ++ + + Sbjct: 1 MEVKKRDGQVVDFEREKINRAIFKSFRSVD------SVISDENLDRISLNIEKTIKERYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE L+++ ++K + Y+LYR + + R + ++ L I+ Sbjct: 55 KDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVLTDFEAFIDDEYTLSII 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D I +E + + S + E++ +++ L ALI ++ Sbjct: 115 KD--------------INDEYDNQRYPIESLYLKFESFTK--KNMTKEALLNALIKAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARF++ + ++ + K ++Q L Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYGIVDFRSKVQYLTSAGL--------YGS 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + ES + DL L LK +R+ F Y GL ++ RY + G IE Q FM ++M Sbjct: 211 YILESYTNKDLEELGAYLKEDRNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E ++ A + Y++LS +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIGEKDQVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIRNVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ A +PDLF K N W +F P Sbjct: 391 AVACYLDIWHKDIPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFWKECRDNIGGDWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE Y + + R I+ L R ++ ETG P Sbjct: 451 HEVFVKYGKSIEDTYGEEFEEFY----YKLVNDKEISKRVIAIKDLIRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 ++ +D N +P +H G+++SSNLCTEI N S E Sbjct: 507 FVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIKTVDGETVIVNTTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N D ++L + T VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGNIDVN---DKEELEEVVSTIVRALDNVIDLNYYPTPYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + ++ D+ E I++ AI AS E+A+E+G+YS F GS Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLDFVDKVYEDINYFAIKASNEIAKEKGSYSCFDGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 WD G D W+ LKK V G+RN +A+APT + + I Sbjct: 684 WDNG--------------DYFKQRGYESERWENLKKDVHENGLRNGYLLAVAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ V L + Sbjct: 730 SGTSAGVDPIMNKYFLEEKKGAIVPRVAP---------GLNTKTFW-------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A+ ID + + RQ+ IDQAQS+N+Y+ E + +++ IY AW Sbjct: 767 --------LYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+R +S Sbjct: 819 AGVKSLYYVRGKS 831 >gi|320527967|ref|ZP_08029133.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium moorei F0204] gi|320131593|gb|EFW24157.1| ribonucleoside-diphosphate reductase, alpha subunit [Solobacterium moorei F0204] Length = 842 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 281/915 (30%), Positives = 432/915 (47%), Gaps = 128/915 (13%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +++KRNG V +D +KI AI K+F++V+ Q + +L EQ + + Sbjct: 8 RIVKRNGQVVPYDGTKIVLAIEKSFLSVK------ESVDQAYLSDLLEQIEAQFDGRQE- 60 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 V +E+IQD VE LM++ + + + Y+LYRE+R+ +R + +++ Sbjct: 61 ---VDVEEIQDTVEKILMKNEKYNVAKSYILYREKRTQMRNDRLELVKLIGDEELENVLV 117 Query: 150 DDGTLIS-FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D ++ KRL +G S D T L SS Sbjct: 118 DIQKTYPDYDLKRLYEKFSTMSK-------------------EGQSLKDRITLLTRSSAE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE PN+ ++ R L + ++ T K + + ++ + IE+G+ Sbjct: 159 LTTKEEPNWERIAGRLLSYSIASDLRATEEKLGLTSFYQKISYM--------IEQGLYGA 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAM 326 + E+ ++ +A + R+ F Y GL +L RY + + + E PQ ++ +AM Sbjct: 211 YILENYSHKEVDEIATLIDNTRNNLFTYSGLDLLSQRYLIRSHQHVLLESPQEMYIGIAM 270 Query: 327 GLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+KE + +FY+++S +TPT N+ + QLSSCF+ TVPD L GI+ Sbjct: 271 HLAMKETNNRIGWVKKFYDMMSLHKVTMATPTQANARKPYHQLSSCFIDTVPDSLDGIYH 330 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G VR G I G G S GVI +++V NDTAVAV+Q G R Sbjct: 331 SISNFADVSKFGGGMGMYLGKVRSRGGSIRGFEGASGGVIRWIRVINDTAVAVDQLGVRA 390 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K V + N W L Sbjct: 391 GAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVKEDMNQDWYLLD 450 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P +V L D YG+E+E Y + R + + R +L + ETG Sbjct: 451 PHDVLMVKGYCLEDFYGEEWEKRYWECVHDNRISK----RVLVLKEVVRLILKSMVETGT 506 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595 P+ ++D N +P +H G+++SSNLCTEI N S Sbjct: 507 PFAFYRDAVNRANPNKHKGMIYSSNLCTEIAQNMSEVKQISRVIKTEDGDEVIVTTTKPG 566 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + VCNL S+ L D ++ T VR LDNVID+N + + A+ +N +R+ Sbjct: 567 DYVVCNLASLCLGNINVK---DPKEIEEVTATVVRALDNVIDLNFYPLPNAQVTNRKYRS 623 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+ G+ L HI + S E ++ D+ E I++ +I AS LA+ERG+Y F+GS Sbjct: 624 IGLGVSGYHHMLAKNHIMWESEEHLKFVDKVFENIAYASIKASNTLAKERGSYQYFEGSE 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G W ELK+ V GMRN+ +A+APT++ + + Sbjct: 684 WESG--------------AYFDARGYDSARWKELKEEVHATGMRNAYVLAVAPTSSTSIL 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI--GN 833 G S +DP V+N F + E K GSI Sbjct: 730 IGTSAGLDP----------------VMNRFFLEEKK-----------------GSILPRT 756 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + D + TA ID W +++A RQ+ IDQAQS NL++ ++ +L +Y A Sbjct: 757 APELSADTYWYYKTAHTIDQTWSVKAAGIRQRHIDQAQSFNLWITNDYKMSQLLQLYVLA 816 Query: 893 WLMGLKTTYYLRSRS 907 + G+KT YY RS++ Sbjct: 817 YDCGVKTIYYTRSKA 831 >gi|15605686|ref|NP_213062.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5] gi|6225952|sp|O66503|RIR1_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|2982838|gb|AAC06460.1| ribonucleotide reductase alpha chain [Aquifex aeolicus VF5] Length = 801 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 278/839 (33%), Positives = 423/839 (50%), Gaps = 116/839 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + ++ + ++ AC GL +V + ++ DG++ +++ LI Sbjct: 2 TMYVIKRSGRKEKLDINKIRIAIKFACEGL-NVDPLELEADAQIQFRDGITTKEIQQLLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLT----TVYKKPQKATHHEMQCLYPEYFCR 258 ++ + E P++ AR LL L ++V ++ K + + Y + Sbjct: 61 KTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFYS-FVKE 119 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317 Y+E+G+ L E+ + D LAN +K ERD F Y G++ILYDRY + G IE+P Sbjct: 120 YVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELP 179 Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q +M +AM LA+ E + K A +FY++LS +TPTL N+ QLSSCF+ T Sbjct: 180 QEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLT 239 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V DDL+ IF +++ M++K++GGLG +R GA I G S GVIP +K+ NDT Sbjct: 240 VDDDLFDIFDNVKKAGMISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDTM 299 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+Q G RKG+ L+ WH D+ +FL+++ N GD+R++ HD++ A IPDLFMKR+ Sbjct: 300 TYVDQLGMRKGSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRLKN 359 Query: 496 NAGWTLFSPD---------------------------------------EVSDLHDLYGK 516 WTL P E L D YG+ Sbjct: 360 REDWTLIDPYWARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFYGE 419 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 EFE Y E +K+++ LW+++LT+ FETG P+I F+D N ++P +H Sbjct: 420 EFEKWYLELEE---NLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHT 476 Query: 577 GVVHSSNLCTEITLNSSSE---------------------ETAVCNLGSINLLAHFANNQ 615 G+V+SSNLC EI S + VCNLGS+NL Sbjct: 477 GMVYSSNLCHEIVQTMSPSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNLGKVHT--- 533 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +++ + VR+LDNVI++N + I +A+ +N +RAIG+G+ + L I + Sbjct: 534 --EEEIKEVLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWE 591 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E ++ AD+ E I+F+A+ S+ELA+ERG Y F GS W +G+ S+ + E Sbjct: 592 SEEHLKFADKLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGILFGRSVEEIEEN--- 648 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + + LPW EL + +K G+RN+ +A+ PT + + I G + SIDP + Y + NM Sbjct: 649 -SRQNGNNLPWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENM 707 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG V + R W + TA+ ID W Sbjct: 708 SGILPQVPPEV-----DRFYWH---------------------------YKTAYTIDHEW 735 Query: 856 LIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 I +A+ RQKWIDQAQSLNL++D G +L +Y AW +GLKT YYLRSRSA +E Sbjct: 736 TIRAAAVRQKWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKTIYYLRSRSAMDIE 794 Score = 38.3 bits (87), Expect = 6.2, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA 53 + VIKR+G D +KI AI A Sbjct: 3 MYVIKRSGRKEKLDINKIRIAIKFA 27 >gi|330837705|ref|YP_004412346.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta coccoides DSM 17374] gi|329749608|gb|AEC02964.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirochaeta coccoides DSM 17374] Length = 848 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 251/927 (27%), Positives = 408/927 (44%), Gaps = 125/927 (13%) Query: 26 IKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + ++ +IKR G ++ KI+ A+ AF + I+ LT + L Sbjct: 1 MPAMETIIKRTGKPETYQEHKITAAMKAAFASRSHTADDT------ILSRLTGEVHDELT 54 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI--- 141 + + S +V +E IQD VE LM+ + + + Y+LYR R+ R + + P+ Sbjct: 55 RLHASGTMVDVELIQDTVEKILMKHEYFDVAKSYILYRSVRTKKRDDRKKILNLLPVPEL 114 Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 P L + D + L G+ + Sbjct: 115 EPVLISIQRDYADAPYQLDLLYGKFSAFSK-------------------PGMETDESLGM 155 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 L+ ++ + ++ P++ + AR + + + +++ L E Sbjct: 156 LVRAAVEMTTQDAPDWEFIAARLRYLQFSLTLKKQESRYGFSDLFGKIRFLTTEGL---- 211 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 + E ++ A + +R+ Y L +L RY + G +E PQ Sbjct: 212 ----YGAYILEKYTHEEIDRAAAFIDEKRNDFLTYSALDLLLQRYVIRSHEGELLETPQE 267 Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ +A+ LA+ E ++ FY+++S+ +TPTL N+ + QLSSCF+ TVPD Sbjct: 268 LFLGIALHLAMDEKKDRLDWVRRFYDMISTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 327 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ + ++K+ GG+G + VR +G+ I G + GVI ++K+ANDTAVAV Sbjct: 328 TLDGIYRSVTNFSQVSKFGGGMGLYFGKVRAVGSAIRDFKGVAGGVIRWIKLANDTAVAV 387 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496 +Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ PDLF + V + Sbjct: 388 DQLGMRQGAVAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDVFPGVCYPDLFWRMVENDIE 447 Query: 497 AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 W L P E+ L D YG E+E Y + R I L R ++ Sbjct: 448 GTWNLMCPYEIYKVKGYHLEDSYGDEWEKRYHECLNDPAVPK----RPIKIKELVRMIIK 503 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------- 591 ETG P+ F+D N +P H G+++ SNLCTEI N Sbjct: 504 SGVETGTPFAFFRDAVNKANPNAHKGMIYCSNLCTEIAQNMAPITQESVEVTTEGAGGDI 563 Query: 592 -----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + E VCNL S+ L + D ++ + VR LDNVID+N + + A Sbjct: 564 VVVEKTKPGEFVVCNLASLVLGNINVD---DPVEVEGIVTATVRALDNVIDLNMYPVPYA 620 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 + +N +RAIGLG G+ L + + S + IAD E I++ A+ AS ++A E+G Sbjct: 621 EITNKRYRAIGLGTSGYHHMLAKKGVAWESEAHLGIADRVFEAINYWAVKASSDIAAEKG 680 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 +Y+ F+GS W G + W L+ V GMRN+ +AI Sbjct: 681 SYAYFEGSDWQTG--------------AYFDKRNYTGDRWAALRSTVAKQGMRNAYLIAI 726 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT++ + + G + +DP + +++ V Sbjct: 727 APTSSTSILAGTTAGLDPVLRRFFLEEKKKNILPRVAP---------------------- 764 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 + ++ A ID +W + +A RQ+ +DQAQSLNLY+ + S +++ Sbjct: 765 ---------ELSPKTYWLYKNAHLIDQIWTVRAAGVRQRHVDQAQSLNLYITTDMSFRQI 815 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVE 912 +Y +AW G+KT YYLRS++ E Sbjct: 816 MNLYVEAWKNGVKTIYYLRSKALEVDE 842 >gi|229495846|ref|ZP_04389572.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas endodontalis ATCC 35406] gi|229317159|gb|EEN83066.1| ribonucleoside-diphosphate reductase, alpha subunit [Porphyromonas endodontalis ATCC 35406] Length = 834 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 270/912 (29%), Positives = 425/912 (46%), Gaps = 122/912 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRN V SF KI A+ +AF A E + + L E +T + Sbjct: 1 MKIIKRNKQVESFSVEKIKNALRRAFRATETRVTPA------ELNALCESILTEI----G 50 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S V +E +QD VE LM SG++K+ + Y+LYR + S+ R + + + ++ Sbjct: 51 SPEAVEVEMVQDIVETRLMASGYYKVAKAYILYRTKHSEAREVINRFRHYIADEEVISLL 110 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 L+ A L +L + Y ++ L ++ Sbjct: 111 K-----------ELQEQYTGAAYALD------LLYAKFYAFYKE--GAEPLQMLTKAAVE 151 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 LI E P + + ARFL +LR+ + K + +++ L EEG+ R Sbjct: 152 LITPEAPKWEFIAARFLGLELRKGLEKVEEKYHLSGFYAKIKFL--------TEEGLYGR 203 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAM 326 + E ++ LA + R Y L ++ RY +H + I E PQ FM +AM Sbjct: 204 YILEHYTKEEIDELAKVIDNSRSNLLTYSSLHLIAKRYLIHSSDHIILESPQEMFMGIAM 263 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E + + A + Y++LS +TPT+ N+ QLSSCF+ +PD+L GI+ Sbjct: 264 HLAMPERHRVQWATKIYDILSQLKVTMATPTMSNARKPLSQLSSCFIDVMPDNLIGIYRT 323 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++KY GG+G VR +G+ I G G + GV+ ++K+ANDTA+AV+Q G R+G Sbjct: 324 IDNFAQVSKYGGGMGIYLGKVRAVGSDIRGFKGVAGGVLKWVKLANDTAIAVDQLGVRQG 383 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 +V YL+ WH D+ EFL +R N GDDR + HD+ IPDLF +++ + N+ W + P Sbjct: 384 SVALYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGVCIPDLFWQQLEEDPNSTWYMLCP 443 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV L D +G E+ Y + + + R I+ + R ++ ETG P Sbjct: 444 HEVLSVKGYALEDYWGDEWTRRYRECLQDSRLAK----RPIAIKDMLRLIIKSAVETGTP 499 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------E 596 +I +D N +P H G+V+ SNLC+EI + S + Sbjct: 500 FIFNRDTVNRMNPNGHCGIVYCSNLCSEIAQSQSEIRLKQQTVVLEEGEEVVIEKTIAGD 559 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L + +L T+ T VR LDNVID+N + I A+ +N R I Sbjct: 560 FVVCNLASLVLGNIDTESAT---ELRDTVHTIVRALDNVIDLNFYPIPYAEITNLKMRPI 616 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ L I + S E + D+ E I+++AI AS LA E+G Y+ F GS W Sbjct: 617 GLGSSGYHHLLAKRGIAWESQEHLSFMDKLYEQINYYAIEASSLLAAEKGQYARFAGSDW 676 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G A + W +L +V +GMRN+ MAIAPT++ + I Sbjct: 677 QTGQ--------------YFAKRNYTSERWQKLAAQVAELGMRNAYLMAIAPTSSTSIIA 722 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G + IDP +++ V +L W Sbjct: 723 GTTAGIDPIMNRFFLEEKKGSIVPRVAP----DLSDETFW-------------------- 758 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895 ++ TA +ID W++++A RQ+ +DQ+QS+NLY+ + + + +Y +AW Sbjct: 759 -------LYKTAHQIDQKWVVDAAGIRQRHLDQSQSVNLYITQDITFGGIRDLYLRAWHE 811 Query: 896 GLKTTYYLRSRS 907 G+KT YY+RS + Sbjct: 812 GVKTLYYIRSLA 823 >gi|271967541|ref|YP_003341737.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270510716|gb|ACZ88994.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 731 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 291/759 (38%), Positives = 419/759 (55%), Gaps = 53/759 (6%) Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 I + + +P +++ A L E + E +A + + + Sbjct: 21 LAIEEAAARVITDPENSRIAAGLLAELIADEAAG----HGVRAFSESVAATHAAGLVQ-- 74 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IEMPQ 318 + + L + + D FEY GL+ +YDRY L +R +E PQ Sbjct: 75 -------DGLAAFVAAHAAELDALVAQDADDRFEYFGLRTVYDRYLLRHPRTRQVLERPQ 127 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP- 377 FF+RVA GL+ + A E Y L+S+ ++ S+PTLFNSG+R PQLSSCFL P Sbjct: 128 HFFLRVACGLSET----VEEAAELYALMSTLSYLPSSPTLFNSGSRRPQLSSCFLLDSPR 183 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I+ + A L+KY+GG+G WT VR G+ I GTNG S G++P+L+ + + A Sbjct: 184 DELEAIYERYGQVARLSKYAGGIGIAWTRVRSRGSLIRGTNGHSNGIVPWLRTLDSSVAA 243 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGG+RKGA C YLE+WH DVEEFL+LR NTG++ RRTH++N ANWIPD FM+RV + Sbjct: 244 VNQGGRRKGAACVYLESWHADVEEFLELRDNTGEEARRTHNLNLANWIPDEFMRRVEADG 303 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF P EV L DLYG +A E + ++I A +L+ +M+ L +TG Sbjct: 304 VWSLFDPKEVPHLTDLYGAA-----FEEAYRAAEAEGRYVKQIPARSLYGRMMRTLAQTG 358 Query: 558 HPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 + W+TFKD N S Q + V+H SNLCTEI ++ ETAVCNLGSINL AH Sbjct: 359 NGWMTFKDAANRTSNQTARPENVIHLSNLCTEILEVTNDAETAVCNLGSINLAAHLDGRD 418 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+ +L T+RTAVR LD ID+ + +A +N R IGLG+MG L L +P+ Sbjct: 419 VDWTRLRRTVRTAVRFLDRTIDLGFYPTPEAGTANRKWRPIGLGVMGLADVLFALRLPFD 478 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 SP+A+E++ E I+ A + S +LA ERG + S+ + GV D G Sbjct: 479 SPQALELSTRISEEIALAAYATSSDLAVERGRHPSYDDTRAAAGVLHPDHYGA------- 531 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W L+ R+ G+RNS +AIAPTATIA+I G + I+P N++ + + Sbjct: 532 -----ARSPEWAALRDRIAETGLRNSLMIAIAPTATIASIAGCYECIEPQVSNIFKRETL 586 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG+F VN +LV +L+ R LW + +K DGS+ ++ +P+DLK ++ TA+E+ Sbjct: 587 SGEFLQVNRYLVRDLQARGLWTPQIRDAIKRADGSVQDVPGMPEDLKSLYRTAWELPQKA 646 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 LI+ A+ R +IDQ+QSLNL++ P+ KL +Y AW GLKTTYYLRSR AT + ++T Sbjct: 647 LIDLAAARTPYIDQSQSLNLFMATPTIGKLSSMYAYAWKSGLKTTYYLRSRPATRIAQTT 706 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + S + C+ CQ Sbjct: 707 V--------------AQAVPDPEAVACSLENPEYCDACQ 731 >gi|325846379|ref|ZP_08169348.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481563|gb|EGC84603.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 842 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 279/913 (30%), Positives = 437/913 (47%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V KR+G V F+ KI+RAI K+F +V+ S+ ++ + ++ + + Sbjct: 1 MEVKKRDGKVVDFEREKINRAIFKSFRSVD------SVISEENLDKISLNIENTIKERYP 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +V +E+IQD VE L+++ ++K + Y+LYR + + R + +S L I+ Sbjct: 55 KDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVLTDFESYIDDDYTLSII 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 D ++++R + S + E++ +++ L ALI ++ Sbjct: 115 KD--INEEYDNQR------------YPIESLYLKFESFTK--ANMTKEALLNALIKAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L KE P++ + ARF++ + ++ + K ++Q L G+ Sbjct: 159 LTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYLTS--------VGLYGA 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E+ + DL L LK ER+ F Y GL ++ RY + G IE Q FM ++M Sbjct: 211 YILEAYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFEGEYIESVQEMFMGISM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E +K A + Y++LS +TPT+ N+ QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIGEKDKVYFAKKLYDILSQLKATMATPTMTNARKPFNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 ITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ A +P+LF K N W +F P Sbjct: 391 AVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPNLFWKECRDNIGGDWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV + D YG+EFE Y + + + R I+ L R ++ ETG P Sbjct: 451 HEVLVKYGKSIEDTYGEEFEEFYHKLVKDKEISK----RVIAIKDLIRLLIKSWTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 ++ +D N +P +H G+++SSNLCTEI N S E Sbjct: 507 FVFNRDAVNKANPNKHKGIIYSSNLCTEIAQNMSPSETVNEEIKTVDGETVIVNTTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL S+ L N D +L + T VR LDNVID+N + AK +N +RAI Sbjct: 567 FVECNLASLTLGNIDVN---DKKELEEVVSTIVRALDNVIDLNYYPTSYAKVTNKKYRAI 623 Query: 657 GLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ L I + +E D+ E I++ AI AS E+A+E+G+YS F+GS Sbjct: 624 GLGTSGYHHMLVKNDIKWSEEDAHLEFVDKVYEDINYFAIKASNEIAKEKGSYSCFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 WD G D W++LKK V G+RN +AIAPT + + I Sbjct: 684 WDNG--------------DYFTQRGYESERWEKLKKDVHENGLRNGYLLAIAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S +DP +++ V L + Sbjct: 730 SGTSAGVDPIMNKYFLEEKKGAIVPRVAP---------GLNTKTFW-------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A+ ID + + RQ+ IDQAQS+N+Y+ E + +++ IY AW Sbjct: 767 --------LYENAYTIDQNISMRACGVRQRHIDQAQSVNVYITTEYTMRQILNIYLTAWE 818 Query: 895 MGLKTTYYLRSRS 907 G+K+ YY+R +S Sbjct: 819 AGVKSLYYVRGKS 831 >gi|303237765|ref|ZP_07324324.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella disiens FB035-09AN] gi|302482051|gb|EFL45087.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella disiens FB035-09AN] Length = 839 Score = 549 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 272/916 (29%), Positives = 432/916 (47%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KR+G S+ KI AI K+F++V G R I+ + + +L+H+ Sbjct: 1 MKIKKRDGSEESYTQQKIISAITKSFISVNSLGHQRD------IEQMALEIEAFVLEHDD 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 +E IQD VE +LM G + + Y+L+R +R++ R + D I L Sbjct: 55 KR---DVESIQDIVEKTLMSHGFYDEAKSYILFRWQRNEQRKYIKNIAFNIGDNSIEEVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D ++ L L +S+++ ALI + Sbjct: 112 NGIRQDFRGAEYSVTLLSDKFVSFSKPL-------------------MSQTEKLAALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + ++ R L +L + + K + + +++ L +EG+ Sbjct: 153 AVELTTAECPQWEMISGRLLSFQLNKSIEALERKLNINSFYDKIKYL--------TDEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + + ++ ++V ++ ER+ F Y GL +L RY + +G +E Q +M Sbjct: 205 YGQYILDNYTKEEIVEAEKLMRPERNHLFNYSGLDLLAKRYLIRGYDGRIVENVQEMYMG 264 Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E ++ + Y+LLS +TPTL N+ + QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKSDRLLWVKKIYDLLSQLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLIG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAQVSKFGGGMGMYFGKVRATGGSIRGFKGAAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + W Sbjct: 385 MRQGAVAVYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMAEESLEQNWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF PDE+ L D YG+E+E Y+ A R IS L R +L E Sbjct: 445 LFCPDEIKRVKGYALEDFYGEEWERRYKECIDDARLSR----RIISIKDLVRLILRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------- 592 TG P+ +D N +P H G+++ SNLCTEI N Sbjct: 501 TGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAEIKEVSQVVTTENGDTVVVTTV 560 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + VCNL S++L D + + T VR LDNVID+N + + AK +NH Sbjct: 561 KPGDFVVCNLASLSLGRL---PLEDKAAMCEKVATVVRALDNVIDLNFYPVPFAKITNHN 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL + I + S + +E D+ E I++ AISAS E+A+E+GAY F+ Sbjct: 618 YRSIGLGVSGYHHALAIRGIKWESDKHLEFMDKVFETINYAAISASTEIAKEKGAYKYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G W +L++ + GMRN+ +A+APT++ Sbjct: 678 GSDWQTGK--------------YFEKRNYITSDWQQLRETIGKQGMRNAYLLAVAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + G + +DP Q +++ V L Sbjct: 724 SILAGTTAGLDPIMQRFFLEEKKGAMLPRVAPAL-------------------------- 757 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 D ++ A+ I+ W + ++ RQ+ IDQAQS+NLY+ +E + +++ +Y Sbjct: 758 -----SDKTYWVYKDAYHINQQWSVRASGVRQRHIDQAQSMNLYITNEYTMRQVLNLYIL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWKSGVKTIYYVRSKS 828 >gi|325831680|ref|ZP_08164897.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella sp. HGA1] gi|325486551|gb|EGC89000.1| ribonucleoside-diphosphate reductase, alpha subunit [Eggerthella sp. HGA1] Length = 845 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 274/915 (29%), Positives = 428/915 (46%), Gaps = 117/915 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87 +Q+ KRNG V +++ KI RA+ AF +V ++ D L + + Sbjct: 1 MQISKRNGTVEAYEAGKIKRAMGAAFASVG------TVLDDDEADRLIARIERAMASAEQ 54 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 V +ED+QD VE +LM++ H++ + Y+LYRE+R+ RAA+ + P P L Sbjct: 55 GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALPG 114 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ++ + L +S+K ++ L L+ ++ Sbjct: 115 VLASVQKEFPGEE----------YELAHLSAKFQSFAK-----PDAADGQLLAMLVKAAV 159 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L +E P + + AR L+ + R + + + + ++ L EEG+ Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETFAQKVAFL--------TEEGLYG 211 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 + + +L A + R+ F Y GLQ+L DRY + G+ +E PQ F+ +A Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271 Query: 326 MGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 + LA++E E+ FY++LS+ +TPTL N+ QLSSCF+ TVPD L GI Sbjct: 272 LHLAMEERPDERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++KY GG+G + VR G+ I G +G + GVI ++++ANDTAVAV+Q G Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F ++ N W L Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG+E+ Y A + R I + R ++ ET Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARIKK----RAIPIKDVIRLIIKSAVET 507 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596 G P+ +D N +P +H G+++ SNLCTEI N + E Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567 Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNL S++L D +LA +AVR LDNVID+N + A+ +N + Sbjct: 568 PGAFVVCNLASLSLGHID---MGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQY 624 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G+ L I + S E + A+ + + A+ AS +A+E+GAY F+G Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G + D R W EL + V G+RN +A+APT++ + Sbjct: 685 SGWQTGEYFRD--------RGLTDGR------WAELARDVAEHGLRNGYLLAVAPTSSTS 730 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP +++ +G V EL W Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + A ID W + + RQ+ IDQAQS+NLY+ +E + +++ +Y A Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 820 WEEGMKTIYYVRSKS 834 >gi|282860354|ref|ZP_06269422.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella bivia JCVIHMP010] gi|282586852|gb|EFB92089.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella bivia JCVIHMP010] Length = 839 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 271/916 (29%), Positives = 427/916 (46%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +QV KR+G + ++ SKI AI K+F + E G Q I+ + + L ++ Sbjct: 1 MQVTKRDGSIENYTQSKIIAAIGKSFASTENLGH------QKEIEEMALEVENFLKENTS 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 +E+IQD+VE +LM G + Y+L+R +R++ R + D I L Sbjct: 55 KR---DVENIQDKVEKTLMAHGFFDEAKSYILFRWQRNEQRKYIKNIAFNIGDNEIEKVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D ++ L L +++ + AL+ + Sbjct: 112 NGIRQDFRGAEYSVTLLSDKFMSFSKPL-------------------MTQKEKLNALVKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + + R L +L R + K + + +++ L +EG+ Sbjct: 153 AVELTTAECPQWEMIAGRLLSFQLNRSIDEVERKLGLSSFYEKLRYL--------TDEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + E D++ + R+ F Y GL +L RY +H + IE Q +M Sbjct: 205 YGTYILEHYSQEDIMAAEKKMDTSRNHLFNYSGLDLLSKRYLIHTFDHKVIERVQEMYMG 264 Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + + Y+LLS +TPTL N+ H QLSSCF+ TVPD L G Sbjct: 265 IALHLAIPEKENRMEWVGKIYDLLSQLEVTMATPTLSNARKPHHQLSSCFIDTVPDSLIG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAQVSKHGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + Q + WT Sbjct: 385 MRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQSLDQNWT 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y+ A R IS L R +L E Sbjct: 445 LFCPNEILRVKGYALEDFYGEEWERRYQECINDARLSR----RVISIKDLVRLILRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N ++ E Sbjct: 501 TGTPFTFNRDIVNRANPNNHKGIIYCSNLCTEIAQNMAAIEEVSQEVKTENGDKVVITTV 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S++L D + + + T VR LDNVID+N + + A+ +NH Sbjct: 561 KPGDFVVCNLASLSLGRL---PLEDKEAMCDKVATVVRALDNVIDLNFYPVPYAEITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL I + S +E +E E I++ AI AS +A+E+G+Y F+ Sbjct: 618 YRSIGLGVSGYHHALAKRGIKWESDRHLEFMNEVFETINYAAIKASSAIAKEKGSYEYFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + W +L+ V GMRN+ +A+APT++ Sbjct: 678 GSDWQTG--------------AYFKKRDYNSEAWQQLQAHVAQQGMRNAYLLAVAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + G + +DP Q +++ V Sbjct: 724 SILAGTTAGLDPIMQRFFLEEKKGAMLPRVAP---------------------------- 755 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + D ++ A+ I+ W I ++ RQ+ IDQAQS+NLY+ ++ + +++ +Y Sbjct: 756 ---ELSDKTYWMYKGAYYINQQWSIRASGIRQRHIDQAQSMNLYITNDYTMRQVLNLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWKSGVKTIYYVRSKS 828 >gi|317488667|ref|ZP_07947207.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA] gi|316912226|gb|EFV33795.1| ribonucleoside-diphosphate reductase [Eggerthella sp. 1_3_56FAA] Length = 845 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 274/915 (29%), Positives = 428/915 (46%), Gaps = 117/915 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ-HN 87 +Q+ KRNG V +++ KI RA+ AF +V ++ D L + + Sbjct: 1 MQISKRNGTVEAYEAGKIKRAMGAAFASVG------TVLDDDEADRLIARIERAMASAEQ 54 Query: 88 KSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKI 147 V +ED+QD VE +LM++ H++ + Y+LYRE+R+ RAA+ + P P L Sbjct: 55 GEGGSVSVEDVQDLVERALMEANHYEELKSYILYREDRARKRAARERLCAQLPSVPALPG 114 Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSR 207 ++ + L +S+K ++ L L+ ++ Sbjct: 115 VLASVQKEFPGEE----------YELAHLSAKFQSFAK-----PDAADGQLLAMLVKAAV 159 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L +E P + + AR L+ + R + + + + ++ L EEG+ Sbjct: 160 ELTTQEAPRWEIIAARLLMVQFDRALAERLAARHIETFAQKVAFL--------TEEGLYG 211 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 + + +L A + R+ F Y GLQ+L DRY + G+ +E PQ F+ +A Sbjct: 212 DYILQHYTPAELDEAAGFIDLSRNDLFTYAGLQLLLDRYVIRTHQGAPLESPQEMFLGIA 271 Query: 326 MGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 + LA++E E+ FY++LS+ +TPTL N+ QLSSCF+ TVPD L GI Sbjct: 272 LHLAMEERASERMGWVRRFYDMLSTLKVTMATPTLSNARKPFHQLSSCFIDTVPDSLDGI 331 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++KY GG+G + VR G+ I G +G + GVI ++++ANDTAVAV+Q G Sbjct: 332 YRSIDNFAKVSKYGGGMGLYFGKVRASGSAIRGFDGAAGGVIRWIRLANDTAVAVDQLGM 391 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F ++ N W L Sbjct: 392 RQGAVAVYLDAWHRDLPEFLALRTNNGDDRMKAHDVFPAVCYPDYFWQQARDNIEGDWYL 451 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG+E+ Y A + R I + R ++ ET Sbjct: 452 MCPHEILTVKGYALEDCYGEEWTRKYLECVADARIKK----RAIPIKDVIRLIIKSAVET 507 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-------------------- 596 G P+ +D N +P +H G+++ SNLCTEI N + E Sbjct: 508 GTPFTFNRDAVNRANPNKHRGMIYCSNLCTEIAQNMGAIEQLEQRIEDVDGEQVVVTVTK 567 Query: 597 ---TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VCNL S++L D +LA +AVR LDNVID+N + A+ +N + Sbjct: 568 PGAFVVCNLASLSLGHID---MGDPHELAHVTESAVRALDNVIDLNFFPVPYAQINNRQY 624 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G+ L I + S E + A+ + + A+ AS +A+E+GAY F+G Sbjct: 625 RPIGLGVSGYHHLLAKSGIRWESEEHLAFAERVFGDVHYAAVRASCAIAREKGAYGFFEG 684 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G + D R W EL + V G+RN +A+APT++ + Sbjct: 685 SGWQTGEYFRD--------RGLTDGR------WAELARDVAEHGLRNGYLLAVAPTSSTS 730 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP +++ +G V EL W Sbjct: 731 IIAGTTAGLDPVMNRYFLEEKKNGLMPRVAP----ELSMDTFW----------------- 769 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + A ID W + + RQ+ IDQAQS+NLY+ +E + +++ +Y A Sbjct: 770 ----------YYKNAHLIDQAWSVRACGVRQRHIDQAQSMNLYITNEYTFRRVLDLYLLA 819 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 820 WEEGMKTIYYVRSKS 834 >gi|258511566|ref|YP_003185000.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478292|gb|ACV58611.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 772 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 248/815 (30%), Positives = 394/815 (48%), Gaps = 85/815 (10%) Query: 122 REERSDVRAAQSHSKSDA--PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179 R + ++R+ ++ + + DG + + ++ ++ C + + Sbjct: 3 RTGQGELRSGRASHALEEWRDRVKTFTVEKRDGRIEPLSLDKIFAFLKRGCEAAEGCDPE 62 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238 + ++ + + DG+ S++ I ++ EP + V AR LL ++ Sbjct: 63 RLAADVWPQLRDGMRTSEIARVAIQAAVEKTSVAEPGWQFVAARLLLFDAYKQASRN--- 119 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 + H + + G + + + ++ LA +K ERD+ F Y+GL Sbjct: 120 ---RGYRHLGYGDFYQLIVELERIGRYGTYIRQHYSEDEIAELAAYIKPERDYLFNYVGL 176 Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 + L DRY + + +E+PQ FM V+M LA+KE +K A FY++LS+ +TPT Sbjct: 177 KQLLDRYAIRNLDNGIMELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPT 236 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 L N+ QLSSCF+ DDL I+ + A ++K+ GG+G +R G+ I Sbjct: 237 LSNARKPFHQLSSCFIDMPEDDLVSIYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNH 296 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G S GV+P+++ N+TAV+ NQ G R GA YL+ WH D+ +FL LR N GD+R + H Sbjct: 297 PGASGGVVPWIRNFNNTAVSCNQLGMRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAH 356 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRG 532 D+ IPDLFM+RV + W LF P EV + D +G+EFE YE + Sbjct: 357 DIFPGVCIPDLFMRRVEERGMWYLFCPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLP 416 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 + +I A+ + ++++ FETG P+I F+D N +P +H G+V+ SNLCTEI N Sbjct: 417 RV----EIPAIEIMKRIMQSAFETGTPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNM 472 Query: 593 SSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 S + VCNL S+NL D D + +R +R +D Sbjct: 473 SPSRRIEETEEGGIITMKTEAGDFVVCNLSSLNLGRC-----RDLDSIREIVRRQIRAMD 527 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NVID+N + + +A +N +RA+GLG+ G+ L IP+ S V+ ADE E+I+F Sbjct: 528 NVIDLNHYPVPQAAVTNRKYRAVGLGVSGYHQYLAEKGIPWESEAHVKHADELFEWINFF 587 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 AI AS+ELA+E+G Y F+GS W G + ++R R WD L++ V Sbjct: 588 AIEASMELAREKGPYPLFEGSDWQTGRYF--------DLRGYRT--RPGGPDWDGLRREV 637 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RN+ +AIAPT++ + I G + IDP Y +++ +G Sbjct: 638 AEHGVRNAYLVAIAPTSSTSLIAGSTAGIDPVYARFFLEEKKNGVVP------------- 684 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + D + A ID W IE+ + RQ+ +DQ+QS Sbjct: 685 ------------------QTAPNLNDKTFWYYKEAHTIDQRWSIEACAARQRHVDQSQSF 726 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 NLY+ S ++ +Y AW GLKT YY+RS+S Sbjct: 727 NLYITPGISARQFLDLYLLAWKRGLKTVYYVRSKS 761 >gi|300113308|ref|YP_003759883.1| ribonucleoside-diphosphate reductase subunit alpha [Nitrosococcus watsonii C-113] gi|299539245|gb|ADJ27562.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitrosococcus watsonii C-113] Length = 1336 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 345/523 (65%), Positives = 409/523 (78%), Gaps = 3/523 (0%) Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T V+ GGKRKGAVCAYLETWHID+EEFLDLRKNTGDDRRRTHDMNTANW+PDLFMKR Sbjct: 816 TTTALVHNGGKRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKR 875 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +N GWTLFSPDE DLHDL G+ FE AY YE +A RGEIK F+K AV LWRKML+M Sbjct: 876 VAENGGWTLFSPDETPDLHDLVGQAFEAAYLGYEGKASRGEIKNFKKRRAVDLWRKMLSM 935 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL H Sbjct: 936 LFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDEIAVCNLGSINLPQHLD 995 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + KL TI TA+R+LDNVID N +++ A++SN HR +GLGLMGFQ AL+ I Sbjct: 996 EDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPVGLGLMGFQDALYKRRI 1055 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS AVE AD SME IS++AI AS +LA ERG+Y +FK SLW QG+ PIDSI LL E Sbjct: 1056 PYASEAAVEFADHSMEAISYYAIKASSDLAAERGSYPTFKDSLWSQGILPIDSISLLEEN 1115 Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R +R+ L WD L+++VKT+GMRNSNCMAIAPTATI+NICGVSQSI+P+YQNL+V Sbjct: 1116 RGGYFQQDRSRTLDWDSLREQVKTVGMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFV 1175 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS I+RIPD+LK ++ATAFEI Sbjct: 1176 KSNLSGEFTVINPYLVRDLKAQNLWDEVMVNDLKYFDGSAQPIDRIPDELKTLYATAFEI 1235 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 DP WL+E+ASRRQKW+DQAQSLNLY+ EPSGKKLD +Y+ AW+ GLKTTYYLRS AT V Sbjct: 1236 DPRWLVEAASRRQKWLDQAQSLNLYMAEPSGKKLDNLYKLAWVRGLKTTYYLRSLGATHV 1295 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 EKST+ G+ N + + S + D +CE CQ Sbjct: 1296 EKSTM--TSGQANKLNAVQSSYIQTSEAPQACSILDPDCEACQ 1336 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 237/440 (53%), Positives = 307/440 (69%), Gaps = 3/440 (0%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60 M ++ E P++ P + +VI+RNG VT FDPSKI+ A+ KAF+A+EG Sbjct: 8 MSYHQEQIPDPETLDPAIRVTAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLALEGN 64 Query: 61 GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120 GA+ S R+ +++L EQ V + ++ VHIE IQDQVE +LM+ GHHKI R YVL Sbjct: 65 GAAMSKRIHQTVEDLAEQVVEACTRRLETGGTVHIEGIQDQVELALMRGGHHKIARAYVL 124 Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180 YREER+ RA + P +++ + DG + RL I+EEAC L + + Sbjct: 125 YREERARERAQGAAKNKKKATEPPIQVTLADGHTAPLDKARLTHIIEEACQNLPETQPQA 184 Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240 +L+ET +N++DG++E D+E ALI S+RT IEKEPNY+ TAR LL+ LRRE L+ ++ Sbjct: 185 ILNETLRNLFDGVAEQDVERALIMSARTFIEKEPNYSYATARLLLDSLRREALSFIHGME 244 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 AT EM YPEYF YI +G + +L+ + +DL L L+ ERDF F YLGLQ Sbjct: 245 THATQQEMIERYPEYFAAYIRQGAEIQLIDSRLTQYDLTRLGQALRPERDFQFTYLGLQT 304 Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 LYDRYF+H G+R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FM STPTLFN Sbjct: 305 LYDRYFIHSGGTRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMSSTPTLFN 364 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 SG+ PQLSSC+LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGK Sbjct: 365 SGSLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGK 424 Query: 421 SQGVIPFLKVANDTAVAVNQ 440 SQGV+PFLKV NDTAVAVNQ Sbjct: 425 SQGVVPFLKVTNDTAVAVNQ 444 >gi|167760515|ref|ZP_02432642.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704] gi|167661881|gb|EDS06011.1| hypothetical protein CLOSCI_02889 [Clostridium scindens ATCC 35704] Length = 843 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 271/913 (29%), Positives = 436/913 (47%), Gaps = 115/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG ++ P KI RA+ AF +V + + L + ++ Sbjct: 1 MRISKRNGTNEAYCPEKIKRAVSLAFQSVGNLLS------DEEADRLLKNVEQKIDDRIT 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 V +E+IQD VE +LM++ H+K + Y+LYREER+ R ++ P +L ++ Sbjct: 55 EEPSVSVEEIQDFVEQALMEANHYKELKSYILYREERARKRKSRKKLADKIPAFDRLALV 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 + D + L+ + +K + D + + LI ++ Sbjct: 115 LADIQKEFTQEE----------YDLEHLYAKFQAFGKP-ELND----QEKLSMLIKAAVE 159 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L +E P + V AR L+ +++ + + + + ++ L E+G+ Sbjct: 160 LTTQEAPQWEMVAARLLMLDFEQKLEKNMRRCHIECFYDKLAYL--------TEQGLYGD 211 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAM 326 + ++ ++ L ++ +R+ F Y GL++L RY + G +E PQ F+ +AM Sbjct: 212 YILKAYDRDEIERLVLFIEPKRNHLFTYSGLELLLGRYVIRTGKGVPMESPQEMFLGIAM 271 Query: 327 GLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+KE ++E FY++LS +TPTL N+ + QLSSCF+ TVPD L GI+ Sbjct: 272 HLAMKEKKDRESWVKRFYDMLSQLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYR 331 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+ Sbjct: 332 SIDNFAKVSKFGGGMGMYFGKVRASGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGMRQ 391 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFS 503 GAV YL+ WH D+ EFL LR N GDDR + HD+ A PD F K N W L Sbjct: 392 GAVAVYLDVWHRDLPEFLGLRTNNGDDRMKAHDVFPAVCYPDYFWKGARDNIEGDWYLMC 451 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+ L D +G+++E Y++ R + + R I + R ++ ETG Sbjct: 452 PHEILTVKGYALEDYFGEDWEERYQDCVRDSRIQK----RVIPIKDIIRLIIKSAVETGT 507 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SE 595 P+ +D N +P H G+++ SNLCTEI N S Sbjct: 508 PFTFNRDTVNRANPNSHKGIIYCSNLCTEIAQNMSAIEQVEQKIEEIDGETVVVTVTKPG 567 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E VCNL S++L D +++A +AVR LDNVID+N + A+ +N +R Sbjct: 568 EFVVCNLASLSLGRL---ELADEEEIAYITESAVRALDNVIDLNFFPVPYARINNRKYRP 624 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+ G+ L I + S E +E ++ I + AI AS +A+E+G+Y F+GS Sbjct: 625 IGLGVSGYHHMLAKHEIAWESEEHLEFVEKVFADIHYAAIKASSRIAREKGSYEYFEGSG 684 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G + D R W+EL+ V G+RN +A+APT++ + I Sbjct: 685 WQNGSYFAD--------RGLTDGR------WEELRAEVAEYGLRNGYLLAVAPTSSTSII 730 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + +DP +++ +G V EL + W Sbjct: 731 AGTTAGLDPIMSRYFLEEKKNGLMPRVAP----ELSMDNFW------------------- 767 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + A ID W + + RQ+ IDQAQS+NLY+ +E + +K+ +Y AW Sbjct: 768 --------YYKNAHYIDQYWSVRACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWE 819 Query: 895 MGLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 820 EGVKTIYYIRSKS 832 >gi|307564964|ref|ZP_07627481.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella amnii CRIS 21A-A] gi|307346277|gb|EFN91597.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella amnii CRIS 21A-A] Length = 839 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 269/916 (29%), Positives = 422/916 (46%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KR+G + ++ PSKI AI K+F++ E G Q I+ + + + ++ Sbjct: 1 MNITKRDGSIEAYTPSKIIIAISKSFISTENTGH------QKEIEEMALEVECFIKENTD 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 +E IQD+VE +LM+ G + Y+L+R +R++ R + D I L Sbjct: 55 KR---DVESIQDRVEKTLMKHGFFDEAKSYILFRWQRNEQRKYIKNIAFNIGDNEIEKVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D ++ L L +++ + ALI + Sbjct: 112 NGIRQDFRSAEYSVTLLSDKFMSFSKPL-------------------MTQKEKMNALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + + R L ++ R + K + + +++ L E Sbjct: 153 AVELTTAECPKWEMIAGRLLSFQINRNIDEVERKLGISSFYDKIRYLTDEGL-------- 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + E+ D+ + + R++ F Y GL +L RY + + IE Q +M Sbjct: 205 YGGYILENYSKEDIAWAEKRMDNSRNYLFNYSGLDLLSKRYLIRTFDHKIIERIQEMYMG 264 Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E + + Y+LLS +TPTL N+ QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKENRLSWVGKIYDLLSKLEVTMATPTLSNARKPSHQLSSCFIDTVPDSLIG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAQVSKFGGGMGMYFGKVRATGGDIRGFKGVAGGVIRWMKLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + QN W Sbjct: 385 MRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEQNLDQNWV 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y+ R IS L R +L E Sbjct: 445 LFCPNEILRVKGYALEDFYGEEWERHYQECIDDTRLSR----RVISIKDLIRLILRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------------------- 592 TG P+ +D N +P H G+++ SNLCTEI N Sbjct: 501 TGTPFTFNRDTVNRANPNGHKGIIYCSNLCTEIAQNMAAIEEISQEVKTENGDKVVVTTV 560 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 E VCNL S++L D D + I T VR LDNVID+N + + AK +NH Sbjct: 561 KPGEFVVCNLASLSLGRL---PLEDKDAMCDKINTVVRALDNVIDLNFYPVPFAKITNHR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL I + S +E DE E I++ AI AS ++A+E+G+Y F Sbjct: 618 YRSIGLGVSGYHHALAKRGIKWESDRHLEFMDEVFETINYAAIKASSDIAKEKGSYEYFN 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G W L+++V+T GMRN+ +A+APT++ Sbjct: 678 GSDWQTG--------------AYFKKRDYRSDKWKHLQEKVQTQGMRNAYLLAVAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + G + +DP Q +++ V Sbjct: 724 SILAGTTAGLDPIMQRFFLEEKKGAILPRVAP---------------------------- 755 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + D ++ A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ +Y Sbjct: 756 ---ELSDKTYWMYKGAYYINQQWSVRASGIRQRHIDQAQSMNLYITNDYTMRQVLNLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWKCGVKTIYYVRSKS 828 >gi|308750952|gb|ADO44435.1| ribonucleoside-diphosphate reductase, alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 792 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 277/830 (33%), Positives = 427/830 (51%), Gaps = 84/830 (10%) Query: 120 LYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179 +YR R+ + + + + G + ++ ++++ AC GL+ V Sbjct: 3 IYR--RAGYKYTSHRLLTAYERERAMYVTKRSGVGEPMDISKIRIVIDFACRGLR-VDPL 59 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238 + ++ +G+S +++ LI ++ + + P++ V AR LL L ++V Sbjct: 60 ELEADAQIQFREGISTKEIQQLLIRTAAEKVSPENPDWQYVAARLLLYDLYKDVGHIRGY 119 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEG----VKARLLHESMMDFDLVYLANDLKYERDFAFE 294 K + + + PE F ++ + L D LA+ +K +RD F Sbjct: 120 KVKDKINGRYKPYNPESFYNLVKNYAEKGIYGEYLLREYSKEDFQALASYIKPDRDLLFN 179 Query: 295 YLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHF 351 Y G+++LYDRY + G+ IE+PQ +M ++M LAL E E+ K FY+L+S Sbjct: 180 YTGIKVLYDRYLVRDEEGNVIELPQEMYMLISMSLALPEKKEERIKWVKTFYDLMSKHEV 239 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+ H QLSSCF+ TV DDLY IF +Q+ ++K++GGLG VR G Sbjct: 240 SLATPTLMNARRPHTQLSSCFVLTVDDDLYDIFDNVQKAGQISKFAGGLGIYLGKVRATG 299 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G S GV+P +K+ ND V V+Q G RKG+ L+ WH DV +FL+++ N GD Sbjct: 300 SPIRKFKGASSGVLPVVKILNDVMVYVDQLGMRKGSASITLDIWHKDVMDFLEVKTNVGD 359 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL------HDLYGKEFEIAYENY 525 +R++ HD++ A IPD+FMKR+ WTL P ++ D YG+EFE Y+ Sbjct: 360 ERKKAHDIHPAISIPDIFMKRLKNREKWTLLDPYYCKNVKDGKNLEDFYGEEFEELYQRL 419 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 ER+ +++ A LW+++LT++FETG P+I F+D N +P +H GVV+SSNLC Sbjct: 420 ERELPPN---AKKEVDAFELWKRLLTVVFETGEPYIFFRDTANRLNPNKHCGVVYSSNLC 476 Query: 586 TEITLNSSSEETA---------------------VCNLGSINLLAHFANNQFDYDKLAST 624 EI N S+ + VCNLGSINL + + + Sbjct: 477 HEIVQNMSASQHIEDSLDPQTGEIVHRKKSGDVVVCNLGSINLGKVYTK-----EDMERV 531 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR+LDNVI IN + I++A+ +N +RAIG+G+ + L I + S E ++ A+ Sbjct: 532 VPLLVRMLDNVISINYYAIKEAEYTNRRYRAIGIGVSNYHYCLVKNAIQWESEEHLKFAN 591 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E I+++AI S+ELA+ERG Y F+GS W +GV G AE ++ + L Sbjct: 592 ALFERIAYYAIKGSMELAKERGRYPLFEGSDWSKGV----FFGRDAEENQRMSEKNGNNL 647 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W EL + VKT G+RN+ +A+ PT + + I G + S+DP + Y + NMSG V Sbjct: 648 NWIELAEEVKTYGLRNAYLLALMPTGSTSLIIGATPSVDPIFAKFYKEENMSGILPQVPP 707 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 R W + +A+ ID W+I +AS RQ Sbjct: 708 E-----IDRYFWH---------------------------YKSAYSIDQEWIIRAASERQ 735 Query: 865 KWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 KWIDQAQSLNL++ + G L +Y +W +GLKT YY RS+S T +E Sbjct: 736 KWIDQAQSLNLFIDPEHVDGPTLSKLYELSWELGLKTVYYCRSKSLTEIE 785 >gi|258648773|ref|ZP_05736242.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella tannerae ATCC 51259] gi|260851103|gb|EEX70972.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella tannerae ATCC 51259] Length = 844 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 271/917 (29%), Positives = 427/917 (46%), Gaps = 118/917 (12%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 +IKR+G + ++ SKI A+ AF ++ + + ++ L L + Sbjct: 5 IIKRDGTIENYKASKIGDAVSAAFASIGEVCPA------EALETLIAAIEKEL-EGIAEN 57 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 V +E IQD VE LM++G ++ R ++LYREER+ RA + + + +++ D Sbjct: 58 RSVRVEQIQDNVEIELMRAGFYRQARRFILYREERAKDRAYINEIEQTVGLEGMHRLLKD 117 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 ++ C + SK ++ + AL ++ I Sbjct: 118 -----------VQRDYPHLCKSFGKLVSKYHAFHKPS-----MTAEEGLHALTRAAVECI 161 Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +EP++ V R + + + ++ + ++ L E + + Sbjct: 162 TAEEPDWEFVAGRLYSFQNDLNIRRKMEGLQLQSLYDKLSYLTTEGY--------YGAYI 213 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGL 328 ES ++ L+ ERD Y GL +L RY + ++E PQ ++ +A+ L Sbjct: 214 LESYTKAEIDLAETFLQPERDRLLTYSGLDLLLRRYTVRNFVHEQLETPQEMYLGIALHL 273 Query: 329 ALKETEKEKRAVE-FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 A++ET+ V FY++LS +TPTL N+ H Q+SSCF+ TV D L GI+ ++ Sbjct: 274 AMRETQNRMDHVRAFYDMLSKQQVSMATPTLANARKPHHQMSSCFIDTVDDSLEGIYRSI 333 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R GA Sbjct: 334 ANFANVSKFGGGMGLYFGKVRANGSDIRGYKGAAGGVIRWIKLANDTAVAVDQLGVRSGA 393 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPD 505 V YL+ WH D+ +FL LR N GDDR + HD+ A PDLF K+V + W L P Sbjct: 394 VACYLDVWHKDILDFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKKVREGLDQSWYLMCPH 453 Query: 506 EV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 E+ L D YG E+E Y + A + +V K L R +L ETG P+ Sbjct: 454 EIQTIKGYALEDSYGDEWEQRYNDCVNDARITKTEVLLK----DLIRLILKSAIETGTPF 509 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------------E 596 F+D N +P +H G+++SSNLC EI N S + Sbjct: 510 AFFRDHVNRMNPNKHKGIIYSSNLCVEIAQNMSPIQSVQIETMKTPEGDDIIVEKTKAGD 569 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ + D ++ + AVR LDNVID+N + +E A+ +N +R I Sbjct: 570 FVVCNLASLVVSKIN---FDDEAEVKRVVYAAVRALDNVIDLNYYPLEYARVTNRRYRPI 626 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+MG+ L I + S +E AD+ ME I+++AI AS+ELA+E+G Y F+GS W Sbjct: 627 GLGIMGYHHYLAQQGIVWESEAHLEAADKLMEKINYYAIRASMELAKEKGHYEYFEGSDW 686 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 G D + + W L V G+RN +AIAPT++ + I Sbjct: 687 QTG--------------DYFSRRQYESADWQALAADVAQAGVRNGYLLAIAPTSSTSIIA 732 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G + DP +++ V L Sbjct: 733 GTTAGTDPVMNRYFLEEKKGATIARVAPSL------------------------------ 762 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 D ++ +A ID W I +A RQ+ +DQAQS+NLY+ ++ + +++ +Y +AW Sbjct: 763 -SDKTWWLYKSAHTIDQTWSIRAAGVRQRHVDQAQSVNLYITNDFTLRQVLNLYIKAWEC 821 Query: 896 GLKTTYYLRSRSATSVE 912 G+KT YY+RS+S E Sbjct: 822 GMKTIYYVRSKSLEITE 838 >gi|288817345|ref|YP_003431692.1| ribonucleotide reductase alpha subunit [Hydrogenobacter thermophilus TK-6] gi|288786744|dbj|BAI68491.1| ribonucleotide reductase alpha subunit [Hydrogenobacter thermophilus TK-6] Length = 767 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 274/805 (34%), Positives = 420/805 (52%), Gaps = 82/805 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + ++ ++++ AC GL+ V + ++ +G+S +++ LI Sbjct: 1 MYVTKRSGVGEPMDISKIRIVIDFACRGLR-VDPLELEADAQIQFREGISTKEIQQLLIR 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ + + P++ V AR LL L ++V K + + + PE F ++ Sbjct: 60 TAAEKVSPENPDWQYVAARLLLYDLYKDVGHIRGYKVKDKINGRYKPYNPESFYNLVKNY 119 Query: 264 ----VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318 + L D LA+ +K +RD F Y G+++LYDRY + G+ IE+PQ Sbjct: 120 AEKGIYGEYLLREYSKEDFQALASYIKPDRDLLFNYTGIKVLYDRYLVRDEEGNVIELPQ 179 Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 +M ++M LAL E E+ K FY+L+S +TPTL N+ H QLSSCF+ TV Sbjct: 180 EMYMLISMSLALPEKKEERIKWVKTFYDLMSKHEVSLATPTLMNARRPHTQLSSCFVLTV 239 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY IF +Q+ ++K++GGLG VR G+ I G S GV+P +K+ ND V Sbjct: 240 DDDLYDIFDNVQKAGQISKFAGGLGIYLGKVRATGSPIRKFKGASSGVLPVVKILNDVMV 299 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+Q G RKG+ L+ WH DV +FL+++ N GD+R++ HD++ A IPD+FMKR+ Sbjct: 300 YVDQLGMRKGSASITLDIWHKDVMDFLEVKTNVGDERKKAHDIHPAISIPDIFMKRLKNR 359 Query: 497 AGWTLFSPDEVSDL------HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 WTL P ++ D YG+EFE Y+ ER+ +++ A LW+++L Sbjct: 360 EKWTLLDPYYCKNVKDGKNLEDFYGEEFEELYQRLERELPPN---AKKEVDAFELWKRLL 416 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA------------ 598 T++FETG P+I F+D N +P +H GVV+SSNLC EI N S+ + Sbjct: 417 TVVFETGEPYIFFRDTANRLNPNKHCGVVYSSNLCHEIVQNMSASQHIEDSLDPQTGEIV 476 Query: 599 ---------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 VCNLGSINL + + + + VR+LDNVI IN + I++A+ + Sbjct: 477 HRKKSGDVVVCNLGSINLGKVYTK-----EDMERVVPLLVRMLDNVISINYYAIKEAEYT 531 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N +RAIG+G+ + L I + S E ++ A+ E I+++AI S+ELA+ERG Y Sbjct: 532 NRRYRAIGIGVSNYHYCLVKNAIQWESEEHLKFANALFERIAYYAIKGSMELAKERGRYP 591 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 F+GS W +GV G AE ++ + L W EL + VKT G+RN+ +A+ PT Sbjct: 592 LFEGSDWSKGV----FFGRDAEENQRMSEKNGNNLNWIELAEEVKTYGLRNAYLLALMPT 647 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + I G + S+DP + Y + NMSG V R W Sbjct: 648 GSTSLIIGATPSVDPIFAKFYKEENMSGILPQVPPE-----IDRYFWH------------ 690 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDF 887 + +A+ ID W+I +AS RQKWIDQAQSLNL++ + G L Sbjct: 691 ---------------YKSAYSIDQEWIIRAASERQKWIDQAQSLNLFIDPEHVDGPTLSK 735 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912 +Y +W +GLKT YY RS+S T +E Sbjct: 736 LYELSWELGLKTVYYCRSKSLTEIE 760 >gi|160915702|ref|ZP_02077910.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991] gi|158432178|gb|EDP10467.1| hypothetical protein EUBDOL_01711 [Eubacterium dolichum DSM 3991] Length = 835 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 267/915 (29%), Positives = 434/915 (47%), Gaps = 127/915 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + ++KR+G + SF KI A+ KAF + + ++ + + + V++L + ++ Sbjct: 1 MNIVKRDGSIQSFHEEKIKDAMRKAFRSTQLPIE------EEQLHIMAVEIVSQLSEGSR 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQS---HSKSDAPIAPKL 145 +EDIQD+VE +LM+ + ++ + Y+LYR +RS+ R A D + Sbjct: 55 ------VEDIQDKVEEALMKHSYFQVAKNYILYRSKRSEQRKALKSLVEEVQDEGLKEVF 108 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + D + ++ +L++ + + ++ LI + Sbjct: 109 FHIQKDFDMEVYDM-------------------SALLTKLRTFLKETMNSEQRMEMLIRA 149 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S +I K+ P + + AR ++ ++ + + + + ++ L +EG Sbjct: 150 SVEMISKDAPKWEYIAARLFAYRMHNDIAARMQQLGIQDFYGKLAYL--------TKEGY 201 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + E+ D+ L L+ ERD F Y GL+++ RY + N +E PQ FM Sbjct: 202 YGSYILENYTQKDIAELEAYLQDERDQLFTYSGLELVVKRYLMRAHNHDILETPQEMFMG 261 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 +AM LA+ E E+ A + Y++LSS +TPT+ N+ + QLSSCF+ V D L I Sbjct: 262 IAMHLAIPEQERVVWAKKIYDVLSSLKATMATPTMSNARRPYHQLSSCFIDCVDDSLMNI 321 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + +++ A ++KY GG+G + VR G+ I G G + G+I ++K+ NDTA AV+Q G Sbjct: 322 YKSIENFAQVSKYGGGMGLYFGKVRASGSDIRGYEGAAGGIIRWIKLVNDTATAVDQLGV 381 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTL 501 R+GAV YL+ WH D+ EFL+LR N GDDR + HD+ A PDLF + + NA W L Sbjct: 382 RQGAVAVYLDVWHKDLPEFLNLRTNNGDDRMKAHDIFPALCYPDLFWRMAKEDLNATWYL 441 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG+E+E Y + R++ + R +L ET Sbjct: 442 MCPHEIHKTMGYHLEDYYGEEWEKRYFECVNDPRISK----REMLLKDIVRLILKSAVET 497 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS---------------------- 594 G P+ +D N +P H G+++ SNLCTEI N Sbjct: 498 GTPFAFNRDHVNRMNPNGHEGMIYCSNLCTEIAQNMKPLELLEKEIVEVDGESIVVERSK 557 Query: 595 -EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 E VCNL S+ L + +L IR VR LDNVID+N + + AK +N + Sbjct: 558 AGEFVVCNLASLTLGNLDVQ---NDSELREVIRVLVRALDNVIDLNYYPLSYAKITNRRY 614 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G+ L + + S E + D E I+++A+ AS +LA+E+G+Y+ F+G Sbjct: 615 RPIGLGVSGYHHMLAKQGLRFESEEHLAFVDTLFEKINYYALEASSDLAKEKGSYACFEG 674 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S + G W L+K+VK G+RN MA+APT++ + Sbjct: 675 SDYATGS--------------YFDKRSYVDEKWWNLRKQVKENGLRNGYLMAVAPTSSTS 720 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S +DP +++ T V +L W Sbjct: 721 IISGTSAGVDPIMNKYFLEEKKGSMITRVAP----DLSPATFW----------------- 759 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 ++ A ID W++ +A RQ+ IDQAQS+NLY+ +E + +K+ +Y +A Sbjct: 760 ----------LYKQAHLIDQSWIVRAAGVRQRHIDQAQSVNLYITNEFTLRKVLNLYIEA 809 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 810 WEQGVKTIYYIRSKS 824 >gi|323343337|ref|ZP_08083564.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella oralis ATCC 33269] gi|323095156|gb|EFZ37730.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella oralis ATCC 33269] Length = 838 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 265/913 (29%), Positives = 426/913 (46%), Gaps = 120/913 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG V +D KI+ AI K+F++ + + I+ + T + N Sbjct: 1 MEITKRNGSVEHYDKEKIATAIRKSFIST--GNSVADTELYAIVGAVENVINTHADRRN- 57 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD+VE LM+ G + + Y+L+R +R++ R A + + I+ Sbjct: 58 ------VESIQDEVERKLMEKGFYNEAKSYILFRWKRTEQRKALNAIAEEIGDTAIAGIL 111 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 I+ + E + S G++E + +ALI ++ Sbjct: 112 K----GIANDFYGSEYGISALSEKFNSFSRA------------GMNEDNKLSALIKAAVE 155 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 + E P++ + AR +L +++ T + + + +++ L +E + Sbjct: 156 MTTAEAPDWEFIAARLASYQLNKDISTFEETEGIHSLYEKLRYL--------TDEKLYGD 207 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + ++ + ++ A+ + ER+ Y G+ +L RY + + IE Q F+ +A+ Sbjct: 208 YILKAYSEEEIAEAASFIVPERNNLLNYSGIDLLIKRYLMRTYSHRPIESVQEMFLGIAL 267 Query: 327 GLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 LA+ E + +FY++LS +TPTL N+ QLSSCF+ TVPD L GIF Sbjct: 268 HLAMNERHRRMVWVRKFYDMLSLLQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEGIFR 327 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +L A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+Q G R+ Sbjct: 328 SLDNFAQVSKFGGGMGLYFGKVRAAGRKIRGFKGAAGGVIRWMKLVNDTAVAVDQLGMRQ 387 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFS 503 GA YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + N W +F Sbjct: 388 GAAAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAEEDINQQWYMFC 447 Query: 504 PDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P+E+ L D YG+E+E Y R +S + R +L ETG Sbjct: 448 PNEIISVKGYSLEDYYGEEWEKRYRECVDDLRISR----RVMSIKDIVRLVLRSAVETGT 503 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596 P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 504 PFTFNRDIVNRTNPNAHRGIIYCSNLCTEIAQNMSEIETVANEIRTEEGDTVVVRAAKPG 563 Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S++L D K+ + + T VR LDNVID+N + + A+ +NH +R+ Sbjct: 564 DFVVCNLASLSLGHL---PLEDDGKMKNIVSTVVRALDNVIDLNFYPLHYARITNHRYRS 620 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+ G+ AL + I + S +E D+ E I+ AI AS +LA E+GAY+ F GS Sbjct: 621 IGLGVSGYHHALAVRGIKWESERHLEFMDQVFERINRAAIEASADLAAEKGAYTYFDGSD 680 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G W ++ ++ GMRN+ +AIAPT++ + I Sbjct: 681 WKTGK--------------YFTKRGYMSKEWQQIARKAAQ-GMRNAYLLAIAPTSSTSII 725 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + +DP + +++ V L Sbjct: 726 AGTTAGVDPVMKRFFLEEKKGAMLPRVAPNL----------------------------- 756 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 D + A+ ID W + +A RQK +DQ+QS+NLY+ +E + +++ +Y AW Sbjct: 757 --SDKTYWAYKGAYLIDQKWSMRAAGIRQKHLDQSQSVNLYITNEYTMRQVLDLYLLAWK 814 Query: 895 MGLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 815 SGVKTLYYVRSKS 827 >gi|77165985|ref|YP_344510.1| ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|254436379|ref|ZP_05049885.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Nitrosococcus oceani AFC27] gi|76884299|gb|ABA58980.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|207088069|gb|EDZ65342.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Nitrosococcus oceani AFC27] Length = 1336 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 345/525 (65%), Positives = 411/525 (78%), Gaps = 7/525 (1%) Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR Sbjct: 816 TTTALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 875 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ GWTLFSPDE DLHDL G+ FE AY YE +A RGEIK F+K AV LWRKML+M Sbjct: 876 VAEDGGWTLFSPDETPDLHDLVGQAFEAAYLGYEDKASRGEIKNFKKRRAVDLWRKMLSM 935 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPWI FKDPCN+RSPQQH GVVHSSNLCTEITLN+S +E AVCNLGSINL H Sbjct: 936 LFETGHPWIAFKDPCNLRSPQQHAGVVHSSNLCTEITLNTSDDEIAVCNLGSINLPQHLD 995 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + KL TI TA+R+LDNVID N +++ A++SN HR +GLGLMGFQ AL+ I Sbjct: 996 EDGLNLPKLEKTITTAMRMLDNVIDYNYYSVPTARRSNLRHRPVGLGLMGFQDALYKRRI 1055 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 PYAS AVE AD SME IS++AI AS LA ERG+Y +F+GSLW QG+ PIDSI LL E Sbjct: 1056 PYASEAAVEFADHSMEAISYYAIKASSNLAAERGSYHTFEGSLWSQGLLPIDSISLLEES 1115 Query: 733 RD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 R +R+ L WD L+++VKT+GMRNSNCMAIAPTATI+NICGVSQSI+P+YQNL+V Sbjct: 1116 RGSYFQQDRSHTLDWDSLREQVKTVGMRNSNCMAIAPTATISNICGVSQSIEPTYQNLFV 1175 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KSN+SG+FTV+N +LV +LK ++LWDE M++DLKY DGS I+RIP++LK ++ATAFEI Sbjct: 1176 KSNLSGEFTVINPYLVQDLKAQNLWDEVMVNDLKYFDGSAQPIDRIPEELKTLYATAFEI 1235 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 DP WL+E+ASRRQKW+DQAQSLNLY+ EP+GKKLD +Y+ AW+ GLKTTYYLRS AT V Sbjct: 1236 DPRWLVEAASRRQKWLDQAQSLNLYMAEPNGKKLDNLYKLAWVRGLKTTYYLRSLGATHV 1295 Query: 912 EKSTLKGVDG-KLNAVPVTDPNSSTHSLGIPSSCTS-DTECEVCQ 954 EKST+ KLNAV P +C+ D +CE CQ Sbjct: 1296 EKSTMTSDQANKLNAVQSGY----IQKSEAPQACSVQDPDCEACQ 1336 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 239/439 (54%), Positives = 309/439 (70%), Gaps = 4/439 (0%) Query: 2 HPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKG 61 +P + + E P++ P + +VI+RNG VT FDPSKI+ A+ KAF+A+EG G Sbjct: 11 YPQEQTHDP-EALDPTVRVTAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLALEGNG 66 Query: 62 ASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLY 121 A+ S R+ ++ LTEQ V + ++ VHIE IQDQVE +LM+ GHHKI R YVLY Sbjct: 67 AAMSKRIHQTVEVLTEQVVEACTRRLETGGTVHIEGIQDQVELALMRGGHHKIARAYVLY 126 Query: 122 REERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIV 181 REER+ RA + I P +++ + DG + RL IVEEAC L + + + Sbjct: 127 REERARERAQTAAKNKKKTIEPPIQVTLADGRTAPLDKARLTRIVEEACQNLPETQPQAI 186 Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 ++ET +N++DG++E D+E ALI S+RT IEKEPNY+ TAR LL+ LRRE L+ ++ Sbjct: 187 INETLRNLFDGVAEQDVERALIMSARTFIEKEPNYSYTTARLLLDSLRREALSFIHGMET 246 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 AT EM YPEYF YI +G + +L+ + +DL L L+ ERDF F YLGLQ L Sbjct: 247 HATQQEMIERYPEYFAAYIRQGAEIQLIDSRLTQYDLTRLGQALRPERDFQFTYLGLQTL 306 Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 YDRYF+H G+R E+PQAFFMRVAMGLA+ E E+E+RA+EFY LLSSF FM STPTLFNS Sbjct: 307 YDRYFIHSGGTRFELPQAFFMRVAMGLAINEIEREERAIEFYELLSSFDFMSSTPTLFNS 366 Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 G+ PQLSSC+LTTVPDDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGKS Sbjct: 367 GSLRPQLSSCYLTTVPDDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGKS 426 Query: 422 QGVIPFLKVANDTAVAVNQ 440 QGV+PFLKV NDTAVAVNQ Sbjct: 427 QGVVPFLKVTNDTAVAVNQ 445 >gi|225850106|ref|YP_002730340.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella marina EX-H1] gi|225645946|gb|ACO04132.1| ribonucleoside-diphosphate reductase, alpha subunit [Persephonella marina EX-H1] Length = 804 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 281/813 (34%), Positives = 421/813 (51%), Gaps = 61/813 (7%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202 ++ DGT F K+L + G+ ++ + K + + ++ +L+T + Sbjct: 5 VVKRDGTEEKFQMKKLINAIFALLEGMDIPDDYEIVFKVAKELDLKIPERVTTQELDTLV 64 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + LI K Y + A+ LL+ + RE+ F IE Sbjct: 65 LKAIEQLIPKHYIYDTLAAKQLLKLINREIDKRFS-----------------SFKEAIEF 107 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 GV L ++DFDL L + L Y RD +Y G+ L DRYF G+ IE PQ FF Sbjct: 108 GVNENLYKPELLDFDLDRLEDALDYSRDALLDYFGMTTLKDRYFTRDREGNIIEKPQWFF 167 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 MRVAMG+ E E ++ YN +S ++ STPTL+NSGT Q SSC++ + D L Sbjct: 168 MRVAMGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVNVIDDSLE 223 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I +E A LAKY+GG+G D T +R G+ IH N KS GVIPF+K+ + A+ QG Sbjct: 224 SIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGVIPFIKIFDTIVNAIQQG 283 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R+ + YL+ WH+D++ FLDLR+ TG+ RT +NTA W+PD M+R+ + L Sbjct: 284 GRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAVWMPDEIMRRIKEGEPLYL 343 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P E +L +G+EF Y +A+ G +K+++KI + + + L L +TGHPW+ Sbjct: 344 FDPAECPELVTAWGEEFTKKYFECIEKAETGHLKLWKKIDSREWFNRYLFKLAKTGHPWL 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619 TFKD N +P GV++SSNLCTEI++ +S E TAVC L S+NL H D+D Sbjct: 404 TFKDRHNEHNPCPEYGVINSSNLCTEISIPNSPESTAVCTLASVNLAKHLNEDRTDIDWD 463 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL TI T V LDN++D N + E+++K+ R +G+GLMGF L L IPY S A Sbjct: 464 KLKDTIETMVLALDNILDKNFYPSEESRKNTMDLRPLGIGLMGFAETLVELGIPYDSDTA 523 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 VE A++ +F+ A S ELA+ERG + ++ +P Sbjct: 524 VEFAEKVAKFMRDTAYRKSEELAKERGPFPHYEEMKEKGKPYPYPP-------------- 569 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 RN+ +AIAPTA+I+ I G + SID + N++ + +SG F Sbjct: 570 ------------------RRNAVLLAIAPTASISIIAGTTSSIDSYFSNVFSRDTLSGKF 611 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIHATAFEIDPMWLIE 858 VVN L+ +L++ D+W+E M +K H GS+ I+ + + K++ A+EI P I+ Sbjct: 612 IVVNKQLMKKLEELDMWNEEMAEKIKAHGGSVQFIDELEGKIDKRLFKGAYEIHPFRQID 671 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 A+ QK++DQA S ++Y++E + IY AW GLK+TYY EK T K Sbjct: 672 IAAAFQKYVDQAVSKSIYIEEELRGDMFDIYMYAWEKGLKSTYYCFIDKTVKGEKYTQKV 731 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951 +S S + + T + + E Sbjct: 732 NKRGTRRGFGLRKAASEESETVKTQTTVEEDIE 764 >gi|226945385|ref|YP_002800458.1| ribonucleoside-diphosphate reductase subunit alpha [Azotobacter vinelandii DJ] gi|226720312|gb|ACO79483.1| ribonucleoside-diphosphate reductase, alpha subunit precursor [Azotobacter vinelandii DJ] Length = 1338 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 335/529 (63%), Positives = 416/529 (78%), Gaps = 10/529 (1%) Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T+ + GGKRKGAVCAYLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKR Sbjct: 813 TTSGLAHNGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKR 872 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ WTLFSP +V DLHDL G+ FE YE YE G+IK+F+ I+A LWRKML+M Sbjct: 873 VFEDGQWTLFSPSDVRDLHDLTGRAFEERYEYYEALTQYGKIKLFKTIAAKDLWRKMLSM 932 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 LFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCTEITLN+S E AVCNLGSINL+ H Sbjct: 933 LFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSINLVNHIN 992 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + + D +KL+ T++TAVR+LDNVIDIN ++++ A+ +N HR +GLG+MGFQ AL+L HI Sbjct: 993 DGRLDTEKLSRTVKTAVRMLDNVIDINYYSVDTARNANFRHRPVGLGIMGFQDALYLQHI 1052 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y S A+ AD SME IS++AI AS +LA+ERGAYSSF+GSLW +G+ P+DS+ +LAE Sbjct: 1053 AYGSEAAIAFADRSMEAISYYAIQASCDLAEERGAYSSFEGSLWSRGILPLDSLDILAEQ 1112 Query: 733 RD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + ++R+S L W L++RVK GMRNSN MAIAPTATI+NI GVSQSI+P+YQNLY Sbjct: 1113 RGTKYIEVDRSSTLDWAPLRERVKK-GMRNSNIMAIAPTATISNIVGVSQSIEPTYQNLY 1171 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKSN+SG+FTV+N +LV++LK R+LWD M++DLKY+DGS+ IERIP DLK ++ATAFE Sbjct: 1172 VKSNLSGEFTVINPYLVHDLKARELWDGVMVNDLKYYDGSVQQIERIPTDLKALYATAFE 1231 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 ++ W++E+ASRRQKWIDQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ +ATS Sbjct: 1232 VETKWIVEAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKTTYYLRALAATS 1291 Query: 911 VEKSTLKGVDGKLNAVPVTDPN----SSTHSLGIPSSCTSD-TECEVCQ 954 EKST+ GKLNAV + +P +C+ D +CE CQ Sbjct: 1292 AEKSTIN--TGKLNAVSSVIDESLSAAEPKPAPVPQACSIDNPDCEACQ 1338 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 231/437 (52%), Positives = 305/437 (69%), Gaps = 4/437 (0%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 D+ P LA P + ++VIKRNG V ++ KI+ AI KAF+AVEG A+ Sbjct: 10 QSPGAPRTADSTPDLAATAPGQ---LRVIKRNGTVVAYTDDKITVAITKAFLAVEGGTAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ + + LTEQ T + S +HIE+IQDQVE +LM++G HK+ R+YV+YRE Sbjct: 67 ASSRIHETVARLTEQVTTTFRRRMPSGGTIHIEEIQDQVELALMRAGEHKVARDYVIYRE 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ R + + A P +++ DG L+ + RL+ I+ EAC GL +V + ++ Sbjct: 127 ARAQERKRAAAVQEVAQPHPSIRVARADGVLVPLDMGRLDTIIGEACEGLAEVDAALIQK 186 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ET KN+YDG++E D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L + A Sbjct: 187 ETLKNLYDGVAEKDVNTALVMTARTLVEREPNYSYVTARLLMDTLRAEALG-FLGVAESA 245 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 THHEM LY Y+E+G++ LL + +FDLV L L +ERD F YLGLQ LYD Sbjct: 246 THHEMADLYARALPVYVEKGIEFELLDPKLREFDLVRLGAALDHERDQQFTYLGLQTLYD 305 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 RYFLH +G R E+PQ FFMRVAMGLA++E +KE+RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 RYFLHKDGIRFELPQVFFMRVAMGLAIEEPQKEERAIEFYNLLSSFDYMASTPTLFNAGT 365 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I GTNGKSQG Sbjct: 366 LRPQLSSCYLTTVPDDLSGIYNAIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQG 425 Query: 424 VIPFLKVANDTAVAVNQ 440 V+PFLKV NDTAVAVNQ Sbjct: 426 VVPFLKVVNDTAVAVNQ 442 >gi|240102479|ref|YP_002958788.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA) [Thermococcus gammatolerans EJ3] gi|239910033|gb|ACS32924.1| Ribonucleoside-diphosphate reductase alpha subunit (nrdA) [Thermococcus gammatolerans EJ3] Length = 911 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 211/929 (22%), Positives = 378/929 (40%), Gaps = 141/929 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V D + N + V R + Sbjct: 5 KVMKRDGRIVPFDRERIRWAIKRAMLEVGVH--------DDKLLNRVVRRVVRRINELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + HIE+IQD VE LM++G ++ + Y+LYR++++++R + + Sbjct: 57 GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKKILNKDR--------- 107 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 L ++ + L + +SR L Sbjct: 108 -----------------------LDEIDKRF----------------SLNALRVLASRYL 128 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 I E + R L E++ L + ++ + + R Sbjct: 129 IRNEKGEIIESPRELFERVA--TLAVIPDLLYDERVYDKNGKHEQDLSRVKYYLEHFEEF 186 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325 +G L +F + E+ + M+V+ Sbjct: 187 DGRY---------------------SIGRFKLNKYHFERLVNLYRELAEKGRMKVSIDEF 225 Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 M + E E++ L++ FM +TP L NSG LS+CF+ + DD+ I Sbjct: 226 LGMLENGAFDDYESEVEEYFRLMTGQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A + AM+ K GG G +++ +R G + T G + G + F+ + + + + QGG Sbjct: 286 MKAAHDVAMIQKSGGGTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGV 345 Query: 444 RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA LE WH D+E+F+ + KN G + +++ W + F + + + L Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALRDGKRYPLV 403 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P + ++I +L+ ++ M + P + Sbjct: 404 NPRT---------------------------GEKVKEIDPKSLFEELAFMAWSKADPGVI 436 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 F D N R+ + G + ++N C E L E CNL SINL Sbjct: 437 FFDVINRRNVLEPAKGGPIRATNPCGEEPLY----EYESCNLASINLAKFVKYDDEGKPY 492 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+D+ A I+ + LDN ID+N + + + R IG+G+MG AL L IPY Sbjct: 493 FDWDEYAYVIQKVAKYLDNAIDVNRFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYN 552 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E ++ E+++F+A SVE A++RG + ++ S + G P++ Sbjct: 553 SEEGFAFMRKATEYLTFYAYKYSVEAAKKRGTFPLYEKSRYKDGELPVE----------G 602 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 LPWDEL + +K G+RN PT +++ I S I+P + +Y KS Sbjct: 603 FYHREIWNLPWDELVEEIKKHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 662 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G+F V+ ELK+R LW + ++ + + GS+ +E IP+D++++ T+ ++ + Sbjct: 663 VGEFYYVDPVFEAELKKRGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLD 722 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----S 910 I + + Q W+ + S + + ++ + + + Y A+ +G K R S + S Sbjct: 723 HILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYS 782 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 VE K V K + V + + Sbjct: 783 VEGEKRKRVPAKPSRYAVEKLKAVVEAEP 811 >gi|307722071|ref|YP_003893211.1| ribonucleoside-diphosphate reductase class Ia subunit alpha [Sulfurimonas autotrophica DSM 16294] gi|306980164|gb|ADN10199.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Sulfurimonas autotrophica DSM 16294] Length = 788 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 277/819 (33%), Positives = 430/819 (52%), Gaps = 104/819 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + +++ A GL +VS + + + DG++ +++ LI Sbjct: 1 MITVIKRNGRTEPLDISKIQKYTSAAVKGLGNVSQSELEVDAQIHFRDGITSKEIQETLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V +R L L +V Y + + + Sbjct: 61 KTAVDKIDIDAPNWTFVASRLFLFNLYHQVNGFTG--------------YCKLEKYFEKG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321 + R+L +DL L +K ERD F YLG++ LYDRY + + IE+PQ F Sbjct: 107 EKEGRILLGLKEMYDLDELEKHIKPERDLQFNYLGIKTLYDRYLIKDRDSNPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA +E +++ A++FYN++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAIAMFLAQREENRQEWAIKFYNMISKFEVMLATPTLSNARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF A +E AML+K+ GG+G DWT VR +G++I G + G IPFLK+ ND A+AV+Q Sbjct: 227 GIFDAYKEMAMLSKFGGGIGWDWTQVRSMGSYIDGHKNAAGGTIPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WHID+ +FLDL+KN+G++RRR HD+ + W+ D+FMKRV ++ WTL Sbjct: 287 GTRKGAIAVYLEPWHIDINDFLDLKKNSGEERRRAHDLFPSLWLNDMFMKRVEEDGIWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + +L ++YG+EF Y E+ E + K+ A LW+K+LT FETG P++ Sbjct: 347 FDPYDTRELTNMYGEEFNKRYLELEQD----ESIIKEKVKAKDLWKKILTSYFETGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600 FKD N +P H G++ SSNLCTEI N+ + Sbjct: 403 CFKDNANRANPNDHYGIIRSSNLCTEIFQNTQPNHYKIKFIFENGESVSYEENEMVTVDS 462 Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630 + NL + + + + TA+R Sbjct: 463 GITKPAKKVTALDSLGGLPIFVVEKEKVDGSTAVCNLASINLSRVNTKKDIDRIVPTAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID+N + +EK K++N R+IGLG+MG L + S E + DE ME + Sbjct: 523 CLDNVIDLNFYPVEKVKRTNMRSRSIGLGVMGEAQMLAEAGTMWGSQEHFDKIDEIMESV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 ++A+SAS +LA E+G+Y F+GS W +G+ P D + S WDEL+ Sbjct: 583 CYNAVSASSDLAAEKGSYPEFEGSKWSRGIMPQDHANAEVVNLVDRGGLFASTYEWDELR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +VK GMRN MA+APT++I+ + G +Q+I+P ++ + + N+SG VV Sbjct: 643 AKVKKQGMRNGYLMAVAPTSSISILTGTTQAIEPVFKRKWSEENLSGLIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + A++++ LI++A+ RQKWIDQ Sbjct: 695 -----------------------VPNLSPDTWSYYTPAYDLNQTVLIKAAAIRQKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QSLN+++ + SG+ L+ IY AW +GLK+TYYLRS+S Sbjct: 732 QSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQS 770 >gi|237733861|ref|ZP_04564342.1| ribonucleotide-diphosphate reductase subunit alpha [Mollicutes bacterium D7] gi|229382942|gb|EEO33033.1| ribonucleotide-diphosphate reductase subunit alpha [Coprobacillus sp. D7] Length = 838 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 266/916 (29%), Positives = 439/916 (47%), Gaps = 123/916 (13%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 +K + + KRNG +D +KI AI KAF ++ ++ +I ++ + + + Sbjct: 1 MKKMLIQKRNGLFQDYDNNKIETAIKKAFCSLSETIKDD--ELKKMIADIEKHIIADM-- 56 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 +E IQD VE +LM+ G+ ++ + Y+LYR++ ++ R + Sbjct: 57 --------SVEAIQDLVEETLMKHGYLQVAKAYILYRQKHTEQRLIIDELLALLGDQNLK 108 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204 K+++ ++ Q+ S +L +K Y +G+S + L+ Sbjct: 109 KVLL-----------KIHKDYP------QEEYSLQLLLVKFKTFYKEGMSHFEALKMLMK 151 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +S LI KE P + ++ARFL + ++V + + + + L ++G Sbjct: 152 ASVELISKEAPKWEMISARFLTYDVNQQVDQKMNTAGRYTFYERINYL--------AQQG 203 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFM 322 + + ES ++ L + R+ F Y GL+++ RY + + IE PQ FM Sbjct: 204 YYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQNHDREIIEKPQEMFM 263 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA+ E+ + K A E Y++LS+ +TPT+ N+ Q+SSCF+ TV D L G Sbjct: 264 SIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAG 323 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K GG+G + VR G+ I G G + GVI +LK+ NDTA AV+Q G Sbjct: 324 IYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLG 383 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WT 500 R+GA YL+ WH D+ EFL +R N GDDR + HD+ A PDLF K + W Sbjct: 384 VRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLEASWY 443 Query: 501 LFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + P E+ ++ D YG+E+E Y + R ++ + R ++ L E Sbjct: 444 MMCPHEIHEVKGYYLEDCYGEEWERKYYECVEDDRIPK----RVMTVKEIVRLIIKSLVE 499 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 500 TGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETIIVEKT 559 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S+ L + D+L I +R LDNVID+N + I AK +N Sbjct: 560 KPGDFVVCNLASLTLGHLDVL---NDDELRHVISVVIRALDNVIDLNYYPIPFAKITNQK 616 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RAIGLG G+ L L + + S E ++ ++ E I++ A+ AS +LA+E+G+YS F Sbjct: 617 YRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSYSLFN 676 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS ++ G R W L+ ++K G+RN +AIAPT++ Sbjct: 677 GSDFETG--------------AYFIKRRYQSKAWQNLQAKIKENGLRNGYLLAIAPTSST 722 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + ++DP + +++ T V +L W Sbjct: 723 SIIAGTTAAVDPIMKKYFMEEKKGSMITRVAP----DLDSETFW---------------- 762 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A ID W++++A RQ+ +DQ+QS+NLY+ +E + +KL +Y + Sbjct: 763 -----------LYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFRKLLNLYIK 811 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 812 AWEYGVKTLYYVRSQS 827 >gi|333030472|ref|ZP_08458533.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides coprosuis DSM 18011] gi|332741069|gb|EGJ71551.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacteroides coprosuis DSM 18011] Length = 835 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 271/925 (29%), Positives = 431/925 (46%), Gaps = 131/925 (14%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRN V F KI RAI+ AF +++ + + ++ E + + + Sbjct: 1 MKIIKRNRQVEDFTYDKIKRAIVAAFHSLQ----------RSVSEHELEIICDLISVNLE 50 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + V +E +QD VE LM+ GH+K + Y+LYR+ R+ R + + ++++ Sbjct: 51 DSDYVDVETVQDLVETVLMKRGHYKEAKAYILYRDRRTACREMINQFRQTITDDDTIELL 110 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFSS 206 D ++ + L L Y++ Y DG L+ ++ Sbjct: 111 QD-----------IQNEFGQKQYDL------QFLYSKYRSFYKADGNP----LKILMKAA 149 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 LI + PN+ + +R L +L +E+ + + + +M L ++ + Sbjct: 150 VELITPDAPNWEFIASRLLAVELEKEIQQAERELGLTSLYKKMNYL--------TQQNLY 201 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRV 324 + ++ ++ L+ +K R+ Y L +L RY + + +E PQ FM + Sbjct: 202 GSYMLKNYSQAEVEELSKYMKTSRNQLLTYSSLHLLSKRYLIQNYSHHLLERPQEMFMGI 261 Query: 325 AMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 AM LA+ E +K A Y++LS+ +TPT+ N+ QLSSCF +PD L GI Sbjct: 262 AMHLAIPEGEKKVCWAKRIYDVLSTLKVTMATPTMSNARKPLSQLSSCFEDVMPDSLVGI 321 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + L A ++K+ GG+G VR +G+ I G G + G++ ++K+ NDTA+AV+Q G Sbjct: 322 YRTLTNFAQVSKFGGGMGIYIGKVRAVGSDIRGFKGVAGGILKWVKLCNDTAIAVDQLGV 381 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R+G+V YL+ WH D+ EFL +R N GDDR + HD+ IPD F ++V N W L Sbjct: 382 RQGSVAIYLDIWHRDMPEFLQIRTNNGDDRMKAHDVFPGICIPDYFWEQVKTNMEGDWYL 441 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ +L D YG E++ Y + R I + R ++ ET Sbjct: 442 MCPHEIMTMKGYNLEDTYGDEWKQKYLECVNDHRIPK----RIIPIKEMVRLIIKSAVET 497 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------------- 595 G P+I +D N +P +H GV++ SNLCTEI N S+ Sbjct: 498 GTPFIFNRDLVNNLNPNKHQGVIYCSNLCTEIAQNQSAIQDVRRTVRLENGDEIIVEETK 557 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+ L D ++L I T VR LDNVID+N + I A+ +N Sbjct: 558 AGDFVVCNLASLVLGNIDVE---DSEELQGIIHTIVRALDNVIDLNFYPIPYAQITNQKM 614 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG G+ L + + S E + D+ E I+++ I AS +LA+E+G YS F Sbjct: 615 RPIGLGTSGYHHLLAQKGLRWESDEHLAYMDKVYEKINYYTIEASNQLAKEKGVYSFFDK 674 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G D + + W L V GMRN +AIAPT++ + Sbjct: 675 SDWQTG--------------DYFKLRGYASEEWKHLATNVAKNGMRNGYLLAIAPTSSTS 720 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + DP V+N + + E K GSI Sbjct: 721 IIAGTTAGTDP----------------VMNRYFLEEKK-----------------GSIVP 747 Query: 834 --IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890 + D ++ TA +ID W+I++A RQ+ +DQ+QS+NLY+ E + +KL +Y Sbjct: 748 RVAPELSDSTFWLYKTAHQIDQSWVIDAAGVRQRHLDQSQSVNLYITQEFTFRKLLNLYL 807 Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915 +AW G+KT YY+RS+S E T Sbjct: 808 RAWEKGVKTLYYVRSQSLEVEECET 832 >gi|212224967|ref|YP_002308203.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus onnurineus NA1] gi|212009924|gb|ACJ17306.1| Hypothetical ribonucleotide reductase alpha subunit [Thermococcus onnurineus NA1] Length = 910 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 208/929 (22%), Positives = 384/929 (41%), Gaps = 141/929 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V +R + ++ + + V + + Sbjct: 5 KVMKRDGRIVPFDKERIKWAIQRAMLEV-------GVRDEKLLNRVVRR-VVKRVNELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + HIE+IQD VE LM+ G + + Y+LYR++++++R + + Sbjct: 57 GQVPHIENIQDIVELELMRVGLFDVAKAYILYRKKKAEIREEKKKILNKDK--------- 107 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 L ++ + + + +SR L Sbjct: 108 -----------------------LDEIDKRF----------------SINALRVLASRYL 128 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 I E + R L E++ V+ ++ + + + + + K Sbjct: 129 IRNEKGEIIESPRELFERVATLVVIPDLLYDERVF--DREGNHEQDLSNVEKYMEKLDEY 186 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325 + +G L +F + E+ Q M+V+ Sbjct: 187 DRKL---------------------SIGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEV 225 Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 M + E E++ L++S FM +TP L NSG LS+CF+ + DD+ I Sbjct: 226 IGMLENGAFDKYEDEIEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A + AM+ K GG G +++ +R G + T G + G + F+ + + + + QGG Sbjct: 286 MKAAHDVAMIQKMGGGTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGV 345 Query: 444 RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA LE WH D+E+F+ + KN G + +++ W F + + + + L Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEKNIGTNVLANFNISVGIW--SDFWEALREGKRYPLI 403 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P + ++I +L+ ++ M + P + Sbjct: 404 NPRT---------------------------GEKVKEIDPKSLFEELAFMAWAKADPGVI 436 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 F D N R+ + + ++N C E L E CNL SINL Sbjct: 437 FFDVINRRNVLEPAKGEKIRATNPCGEEPLY----EYESCNLASINLAKFVKYDEEGKPY 492 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+D+ A I+ + LDN ID+N + + + R IG+G+MG AL L I Y Sbjct: 493 FDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYN 552 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E + ++ E+++F+A SVE A++RG + ++ + + G P++ Sbjct: 553 SKEGYDFMRKATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEGY--------- 603 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 LPWDEL + +K G+RN PT +++ I S I+P + +Y KS Sbjct: 604 -YHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 662 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G+F V+ ELK+R LW + ++ + + GS+ +E IP+D++++ T+ +I + Sbjct: 663 VGEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHWLD 722 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----S 910 I + + Q W+ + S + + ++ + + + Y A+ +G K R S + S Sbjct: 723 HILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYS 782 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 VE + V K +A V + + Sbjct: 783 VEGEKRQRVKAKPSAYAVEKLKAVVEAEP 811 >gi|167756570|ref|ZP_02428697.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402] gi|167702745|gb|EDS17324.1| hypothetical protein CLORAM_02107 [Clostridium ramosum DSM 1402] Length = 846 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 266/916 (29%), Positives = 439/916 (47%), Gaps = 123/916 (13%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 +K + + KRNG +D +KI AI KAF ++ ++ +I ++ + + + Sbjct: 9 VKKMLIQKRNGLFQDYDNNKIETAIKKAFCSLSETIKDD--ELKKMIADIEKHIIADM-- 64 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 +E IQD VE +LM+ G+ ++ + Y+LYR++ ++ R + Sbjct: 65 --------SVEAIQDLVEETLMKHGYLQVAKAYILYRQKHTEQRLIIDELLALLGDQNLK 116 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIF 204 K+++ ++ Q+ S +L +K Y +G+S + L+ Sbjct: 117 KVLL-----------KIHKDYP------QEEYSLQLLLVKFKTFYKEGMSHFEALKMLMK 159 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +S LI KE P + ++ARFL + ++V + + + + L ++G Sbjct: 160 ASVELISKEAPKWEMISARFLTYDVNQQVDQKMNTAGRYTFYERINYL--------AQQG 211 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFM 322 + + ES ++ L + R+ F Y GL+++ RY + + IE PQ FM Sbjct: 212 YYGQYILESYSKDEIDMLGQYISESRNELFTYSGLELIVKRYLIQNHDREIIEKPQEMFM 271 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA+ E+ + K A E Y++LS+ +TPT+ N+ Q+SSCF+ TV D L G Sbjct: 272 SIAMHLAMNESNRVKWAKEIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAG 331 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K GG+G + VR G+ I G G + GVI +LK+ NDTA AV+Q G Sbjct: 332 IYKSIDNFAKVSKNGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLG 391 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WT 500 R+GA YL+ WH D+ EFL +R N GDDR + HD+ A PDLF K + W Sbjct: 392 VRQGAAAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKNDLEASWY 451 Query: 501 LFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + P E+ ++ D YG+E+E Y + R ++ + R ++ L E Sbjct: 452 MMCPHEIHEVKGYYLEDCYGEEWERKYYECVEDDRIPK----RVMTVKEIVRLIIKSLVE 507 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ +D N +P H G+++ SNLCTEI N + E Sbjct: 508 TGTPFTFNRDHVNNFNPNPHQGMIYCSNLCTEIAQNMQAMEILPSEEIEVNGETIIVEKT 567 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S+ L + D+L I +R LDNVID+N + I AK +N Sbjct: 568 KPGDFVVCNLASLTLGHLDVL---NDDELRHVISVVIRALDNVIDLNYYPIPFAKITNQK 624 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RAIGLG G+ L L + + S E ++ ++ E I++ A+ AS +LA+E+G+YS F Sbjct: 625 YRAIGLGTSGYHHMLVKLKMSFESDEHLQFIEQLYEKINYFALEASCDLAKEKGSYSLFN 684 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS ++ G R W L+ ++K G+RN +AIAPT++ Sbjct: 685 GSDFETG--------------AYFIKRRYQSKAWQNLQAKIKENGLRNGYLLAIAPTSST 730 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + ++DP + +++ T V +L W Sbjct: 731 SIIAGTTAAVDPIMKKYFMEEKKGSMITRVAP----DLDSETFW---------------- 770 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 ++ A ID W++++A RQ+ +DQ+QS+NLY+ +E + +KL +Y + Sbjct: 771 -----------LYKNAHYIDQEWIVKAAGIRQRHLDQSQSVNLYMTNEFTFRKLLNLYIK 819 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 820 AWEYGVKTLYYVRSQS 835 >gi|288801823|ref|ZP_06407265.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica D18] gi|288335865|gb|EFC74298.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica D18] Length = 839 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 267/916 (29%), Positives = 431/916 (47%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG V ++ KIS AI K+F++ + + ++ V + ++ N Sbjct: 1 MNITKRNGEVEVYNNEKISIAIKKSFISTGKDISD--SEIAGMVSE-----VEQFIKENP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS---KSDAPIAPKL 145 +EDIQ++VE LM GH+ + Y+L+R +R++ R A ++ D +A L Sbjct: 54 ELRT--VEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINYIVWTADDRELADVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + S++ L+ G+S+ D ALI + Sbjct: 112 HSVAREYRERSYSMVTLQEKFSSFTK-------------------PGMSQKDSIDALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + ++AR L + +++ + K + + EEG+ Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEKKITRLEEELGLKTFYRK--------VKYMTEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + ++ + ++ A + ER+ Y GL +L RY + G IE Q F+ Sbjct: 205 YGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYTGKVIERVQEMFLG 264 Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E ++ Y+LLS +TPTL NS QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKEDRLTWVRRIYDLLSKLEVTMATPTLSNSRKSSHQLSSCFIDTVPDSLDG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L + ++K+ GG+G + VR G +I G G + GVI ++++ NDTAVAV+Q G Sbjct: 325 IYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W+ Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNWS 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + R IS + R +L E Sbjct: 445 LFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR----RVISIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592 TG P+ +D N +P H G+++ SNLCTEI N + Sbjct: 501 TGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVVVTTT 560 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 E VCNL S++L D +K+ + T VR LDNVI++N + + A+ +N Sbjct: 561 RPGEFVVCNLASLSLGRL---PLEDEEKMKEKVATVVRALDNVINLNFYPVPYAQLTNQR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS LA+E+G+Y F+ Sbjct: 618 YRSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSNLAKEKGSYQFFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G W +++K V GMRN+ +A+APT++ Sbjct: 678 GSDWQTG--------------AYFDKRGYDSAEWQDVRKTVALQGMRNAYLLAVAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + +DP + +++ V Sbjct: 724 SIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP---------------------------- 755 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + D+ ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ +Y Sbjct: 756 ---ELSDETYWMYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILDLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWKEGVKTIYYVRSKS 828 >gi|302344782|ref|YP_003813135.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica ATCC 25845] gi|302149042|gb|ADK95304.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella melaninogenica ATCC 25845] Length = 839 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 268/916 (29%), Positives = 432/916 (47%), Gaps = 125/916 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG V ++ KIS AI K+F++ + + I + + + ++ N Sbjct: 1 MNITKRNGEVEVYNNEKISIAIKKSFISTGKDIS------DNEIAGMVSEV-EQFIKENP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHS---KSDAPIAPKL 145 +EDIQ++VE LM GH+ + Y+L+R +R++ R A ++ D +A L Sbjct: 54 ELRT--VEDIQNRVEKCLMAHGHYDEAKNYILFRYQRNEQRQAINYIVWTADDRELADVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + S++ L+ G+S+ D ALI + Sbjct: 112 HSVAREYRERSYSMVTLQEKFSSFTK-------------------PGMSQKDSIDALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + ++AR L + +++ + K + + EEG+ Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEKKITRLEEELGLKTFYRK--------VKYMTEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + ++ + ++ A + ER+ Y GL +L RY + +G IE Q F+ Sbjct: 205 YGDYILQNYSEEEINEAATFIDPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLG 264 Query: 324 VAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +A+ LA+ E ++ Y+LLS +TPTL NS QLSSCF+ TVPD L G Sbjct: 265 IALHLAMPEKEDRLMWVRRIYDLLSKLEVTMATPTLSNSRKPSHQLSSCFIDTVPDSLDG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +L + ++K+ GG+G + VR G +I G G + GVI ++++ NDTAVAV+Q G Sbjct: 325 IYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWT 500 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W+ Sbjct: 385 MRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDMNQNWS 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LF P+E+ L D YG+E+E Y + R IS + R +L E Sbjct: 445 LFCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLSR----RVISIKDIVRLVLRSAVE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------S 592 TG P+ +D N +P H G+++ SNLCTEI N + Sbjct: 501 TGTPFTFNRDTVNRANPNAHKGMIYCSNLCTEIAQNMAPIETVSKEVETKDGDTVVVTTT 560 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 E VCNL S++L D +K+ + T VR LDNVI++N + + A+ +N Sbjct: 561 RPGEFVVCNLASLSLGRL---PLEDEEKMKEKVATVVRALDNVINLNFYPVPYAQLTNQR 617 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +R+IGLG+ G+ AL I + S E +E D+ E I+ AI AS LA+E+G+Y F+ Sbjct: 618 YRSIGLGISGYHHALAKRRIKWESEEHLEFMDKVFETINRAAILASSNLAKEKGSYQFFE 677 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G W +++K V GMRN+ +A+APT++ Sbjct: 678 GSDWQTGT--------------YFDKRGYDSAEWQDVRKTVALQGMRNAYLLAVAPTSST 723 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + +DP + +++ V Sbjct: 724 SIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP---------------------------- 755 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + D+ ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ +Y Sbjct: 756 ---ELSDETYWMYKSAYLINQKWSVRASGVRQRHIDQAQSMNLYITNDFTMRQILDLYLL 812 Query: 892 AWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 AWKEGVKTIYYVRSKS 828 >gi|163781847|ref|ZP_02176847.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp. 128-5-R1-1] gi|159883067|gb|EDP76571.1| ribonucleotide reductase alpha chain [Hydrogenivirga sp. 128-5-R1-1] Length = 767 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 271/802 (33%), Positives = 414/802 (51%), Gaps = 76/802 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ G + ++ + +E A GL +V + ++ DG++ +++ LI Sbjct: 1 MEVVKRSGKREQLDINKIRIALEFAFKGL-NVDPLELETDAQIQFRDGITTEEIQAVLIR 59 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE- 262 ++ + E P++ AR LL L ++V + + + + E F +I Sbjct: 60 TAAEKVSPETPDWQFAAARLLLYDLYKKVAHIRGYEVRDELSKDYKPYNTEGFYEFINRF 119 Query: 263 ---GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQ 318 G+ L + + D+ LA +K ERD F Y G++IL DRY G IE+PQ Sbjct: 120 VGEGIYGDYLLKHYSESDIRDLAKHIKPERDLYFNYTGIKILTDRYLARDEDGRIIELPQ 179 Query: 319 AFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 +M ++M LA+ E ++ K A EFY+LLS +TPTL N+ QLSSCF+ TV Sbjct: 180 EMYMLISMTLAIPEKEGDRVKWAKEFYDLLSEHLITVATPTLMNARRPFTQLSSCFILTV 239 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 DDLY IF +Q+ A ++K++GGLG +R GA I G S G+IP +KV ND Sbjct: 240 DDDLYDIFDNVQKAAQISKHAGGLGIYIGKLRATGAPIRKFKGASSGIIPVVKVINDVMT 299 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+Q G RKG+ L+ WH D+ +FL+++ N GD+R++ HD++ A IPDLFMKRV Sbjct: 300 YVDQLGMRKGSASITLDIWHKDILDFLEVKTNAGDERKKAHDIHPAISIPDLFMKRVKNR 359 Query: 497 AGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P V D +L E E YER +++ A LW+++LT+ Sbjct: 360 EKWTLLDPYYTKNVRDGKNLEDLWGEAFEEEYERLEKELPEDAKKEVDAFELWKRLLTVA 419 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595 FETG P++ F+D N +P +H G+V+SSNLC EI N S Sbjct: 420 FETGEPYLFFRDHANRINPNKHAGMVYSSNLCHEIVQNMSPTKHLGKELDPETGEIVHRK 479 Query: 596 ---ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + VCNLGS+NL + + + + VR+LDNVI++N + I +A+ +N Sbjct: 480 KSGDVVVCNLGSVNLGKVYTK-----ETMEQVVPKLVRLLDNVIEMNYYAIPEAEYTNKR 534 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RAIG+G+ + L + + S + ++ AD+ E + F+AI S+ELA+ERG Y F+ Sbjct: 535 YRAIGIGVSNYHYCLVKNGVNWESEDHLKFADKLFELLGFYAIKGSMELAKERGKYRLFE 594 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W +G+F L E E + LPW +L + V+ G+RNS +A+ PT + Sbjct: 595 GSDWSRGIFFGRKAEELEENSKENGND----LPWKDLAEDVRENGIRNSYLLALMPTGST 650 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + S+DP + Y + NMSG V R W Sbjct: 651 SLILGATPSVDPIFAKYYKEENMSGILPQVPPE-----IDRFFWH--------------- 690 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYR 890 + +A+ ID W++ +A+ RQKWIDQAQSLNL++ ++ G L IY+ Sbjct: 691 ------------YKSAYNIDQEWVVRAAAVRQKWIDQAQSLNLFIDPEKIDGPTLSKIYQ 738 Query: 891 QAWLMGLKTTYYLRSRSATSVE 912 AW +GLKT YYLRS+S T +E Sbjct: 739 LAWELGLKTIYYLRSKSITDIE 760 Score = 42.1 bits (97), Expect = 0.49, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAF--MAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 ++V+KR+G D +KI A+ AF + V+ ++Q TE+ L++ Sbjct: 1 MEVVKRSGKREQLDINKIRIALEFAFKGLNVDPLELETDAQIQFRDGITTEEIQAVLIR 59 >gi|325268391|ref|ZP_08135023.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella multiformis DSM 16608] gi|324989245|gb|EGC21196.1| ribonucleotide-diphosphate reductase alpha subunit [Prevotella multiformis DSM 16608] Length = 840 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 265/917 (28%), Positives = 437/917 (47%), Gaps = 126/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++IKRNG +++ +KIS AI K+F++ + A + I + + + Sbjct: 1 MEIIKRNGEKEAYNNNKISIAIKKSFISTGKEIA------DNEIAGMVGEVEQFIT---D 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 + + +EDIQ++VE LM+ GH+ + Y+L+R +R++ R A ++ D +A L Sbjct: 52 NPGLRTVEDIQNRVEKCLMEHGHYDEAKNYILFRYQRNEQRQAINYIAWAADDRQLADVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + S++ L+ G+S D ALI + Sbjct: 112 HRVAREYRERSYSMVTLQEKFASFSK-------------------PGMSHRDAIDALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + ++AR L + +++ + K + + EEG+ Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEQKISRLEEELGLKTFYQK--------VRYMTEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + ++ + ++ A+ ++ +R+ + GL +L RY + G +E Q F+ Sbjct: 205 YGDYILQNYGEEEINEAADFMQPDRNELLNFSGLDLLLKRYVIKSYAGKVLERVQEMFLG 264 Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +A+ LAL E ++ Y+LLS +TPTL N+ + QLSSCF+ TVPD L Sbjct: 265 IALHLALPEKKEDRLLWVRRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLD 324 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q Sbjct: 325 GIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 384 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499 G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W Sbjct: 385 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNW 444 Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLF P+E+ L D YG+E+E Y + R IS + R +L Sbjct: 445 TLFCPNEIMRIKGYCLEDCYGEEWERRYLDCVNDQRISR----RVISIKDIVRLVLRSAV 500 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591 ETG P+ +D N +P H G+++ SNLCTEI N Sbjct: 501 ETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTK 560 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + E VCNL S++L D +++ + T VR LDNVI +N + + A+ +N Sbjct: 561 TRPGEFVVCNLASLSLGRL---PLEDEEQMKEKVATVVRALDNVISLNFYPVPYARITNQ 617 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS +LA+E+G+Y F Sbjct: 618 RYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFETINRAAILASSDLAREKGSYQFF 677 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 +GS W G W E+++ V GMRN+ +A+APT++ Sbjct: 678 EGSEWQTG--------------AYFDKRGYGSAEWQEVRRTVARQGMRNAYLLAVAPTSS 723 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + +DP + +++ V Sbjct: 724 TSIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP--------------------------- 756 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 + D+ ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ +Y Sbjct: 757 ----ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYL 812 Query: 891 QAWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 LAWKSGVKTLYYVRSKS 829 >gi|34558071|ref|NP_907886.1| ribonucleotide-diphosphate reductase subunit alpha [Wolinella succinogenes DSM 1740] gi|34483789|emb|CAE10786.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN [Wolinella succinogenes] Length = 788 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 300/866 (34%), Positives = 438/866 (50%), Gaps = 133/866 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L ++ G + + +++ A GL++VS + + D ++ +++ LI Sbjct: 1 MLTVIKRSGRVEPLDVTKIQKFTHSAVLGLENVSQSELEVDAKIQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + P + V AR L L +V Y + + Sbjct: 61 KTAVDKIDVDAPEWTYVAARLFLYDLYHKV--------------NRFTGYGKLKDYFERG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 + R++ FDL +L + ERD F YLG++ LYDRY + IE+PQ F Sbjct: 107 ESEGRIIKGLRGKFDLDFLDTKIVPERDLQFNYLGIKTLYDRYLIKDRSNKPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E E + AV+FY+LLS F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MSIAMFLAQNEREPNEWAVKFYDLLSRFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF +E A+L+KY GG+G D++ VRGLG++I G + GV+PFLK+ ND A+AV+Q Sbjct: 227 GIFDGYKEMALLSKYGGGIGWDYSKVRGLGSYIDGHKNAAGGVVPFLKITNDVAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH D+ +F+DL+KN+G++RRR HD+ A WIPDLFMKRV ++ WTL Sbjct: 287 GTRKGAISVYLEPWHTDIFDFIDLKKNSGEERRRAHDLFPALWIPDLFMKRVEEDGAWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P E DL +L+G+ FE Y YE E + I A LW+K+LT FE G P++ Sbjct: 347 LDPHECQDLTNLHGEAFEKRYLEYECM----EGIIKETIRAKELWKKVLTSYFEIGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ + Sbjct: 403 CFKDNANRLNPNAHKGIIRSSNLCTEIFQNTEPNHYLIQVEYEDGSSERFEEHAIITTDT 462 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + AVR Sbjct: 463 GVEKRANKITSMDSLQGKKVFIAERIAQEGKTAVCNLASINLSKIHTQEDIERVVPIAVR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +K K++N RAIGLG+MG L I + S E +E DE ME + Sbjct: 523 MLDNVIDLNFYPNKKVKRTNLETRAIGLGVMGEAQMLAESKIVWGSQEHLERIDEIMEQV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S+HAI AS LA+E+G Y F+GS W +G+FPID A+ + + WD L+ Sbjct: 583 SYHAIKASSTLAKEKGIYPDFEGSNWSKGIFPIDLANSEAKKLVDRGGLFGTDCDWDSLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EQVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + W+ + +A+++D LI++AS RQKWIDQ Sbjct: 699 -SLETWN--------------------------FYQSAYDLDQNLLIKAASIRQKWIDQG 731 Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QS N++ LD+ SGK L+ IY AW +GLK+TYYLRS+S E++T+ Sbjct: 732 QSTNIFISLDKASGKYLNDIYVNAWKLGLKSTYYLRSQSP-QAEENTMDRSI-------- 782 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 783 --------------------ECEGCQ 788 >gi|283768722|ref|ZP_06341633.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia extructa W1219] gi|283104508|gb|EFC05881.1| ribonucleoside-diphosphate reductase, alpha subunit [Bulleidia extructa W1219] Length = 836 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 280/912 (30%), Positives = 433/912 (47%), Gaps = 127/912 (13%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 + KRNG FD +KI AI K+F +++ DI + + L Q + Sbjct: 6 ITKRNGQQVPFDSTKIQMAIRKSFASLQA----------DISEEDLASILDLLEQKIINR 55 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 + +E IQD+VE SLM+ G+ ++ ++Y+LYR+ R+ R ++ I + ++ Sbjct: 56 EKLDVEFIQDKVEQSLMEKGYFEVAKKYILYRQVRTIQRQERNELLELMAIEGLEEHLLS 115 Query: 151 DGTLIS-FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 + KRL+ E +G + D + L+ S+ L Sbjct: 116 LQKTYPNLSLKRLKERYENTITG----------------------QEDRLSLLVRSAAEL 153 Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 KE P + KV R L +L ++ + + ++Q L +EG+ Sbjct: 154 TSKEEPTWEKVAGRLLAFQLSLKLKQAEDSLGIHSFYEKLQYL--------TQEGLYGDY 205 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFFMRVAMG 327 + + ++ + + + D+ F Y GL +L +RY +H I E PQ ++ +A+ Sbjct: 206 ILKGYHQEEIEEAYHFIDFSHDYRFTYAGLDLLANRYLIHSRQHVILESPQEMYLGIALH 265 Query: 328 LALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LALKE + + +FY++L+ +TPTL N+ + QLSSCF+ TVPD L GI+ + Sbjct: 266 LALKEKKYRMEWVKKFYDMLARHEVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYQS 325 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G VR G I G G S GVI +++V NDTAVAV+Q G R+G Sbjct: 326 IANFADVSKFGGGMGMYLGKVRSRGGMIRGFEGASGGVIRWIRVINDTAVAVDQLGVRQG 385 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 AV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K+V + N W P Sbjct: 386 AVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKKVKEDINQDWYFMDP 445 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 ++ L D YG+E+E YE + + R +S + R +L + ETG P Sbjct: 446 HDIFVVKGYHLEDSYGEEWERKYEECIQDHRISK----RVMSIKEVVRLILKSIVETGTP 501 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEE 596 + ++D N +P +H G+++ SNLCTEI N S + Sbjct: 502 FAFYRDAVNRANPNKHAGIIYCSNLCTEIAQNMSEACIESRTIETRDGETVIVQTQKPGD 561 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D L TAVR LDNVID+N + + AK +N +RAI Sbjct: 562 FVVCNLASLCLGNINVN---DIADLERVTSTAVRALDNVIDLNFYPLVNAKITNQNYRAI 618 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG+ G+ L I + S E ++ D E I++ I AS ELA+ERG+YS FKGS W Sbjct: 619 GLGVSGYHHMLAKNRIQWESEEHLQFVDRVFEDIAYMTIRASHELAKERGSYSLFKGSDW 678 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + G D + + W +L+K ++ GMRN+ MAIAPT++ + + Sbjct: 679 ENG--------------DYFRLRKYESERWLKLQKDIQKGGMRNAYVMAIAPTSSTSILI 724 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G + +DP V+N F + E K L Sbjct: 725 GTTAGLDP----------------VLNRFFMEEKKGTMLP---------------RTAPE 753 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + + + +A ID + I + RQ+ IDQ+QS NL++ +E +L + A+ Sbjct: 754 LSLETYWYYKSAHTIDQNYSIRANGIRQRHIDQSQSFNLWITNEYKMSQLLKLLTLAYDC 813 Query: 896 GLKTTYYLRSRS 907 G+KT YY RS++ Sbjct: 814 GVKTIYYTRSKA 825 >gi|224437766|ref|ZP_03658713.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313144212|ref|ZP_07806405.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter cinaedi CCUG 18818] gi|313129243|gb|EFR46860.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter cinaedi CCUG 18818] Length = 792 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 300/820 (36%), Positives = 440/820 (53%), Gaps = 104/820 (12%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ +G + + +++ A GL+ V+ + + D ++ +++ L Sbjct: 3 DTITVVKRNGRIEPLDVSKIQKHTSAAVEGLEGVTQSELEVDAKILFKDKITTEEIQQTL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ I+ + PN++ V AR L L +V Y + +I+ Sbjct: 63 IKTAVDKIDVDAPNWSFVAARLFLYDLYHKVTGWTG--------------YKKLEDYFIQ 108 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + RLL +DL +L + +K ERD F YLG++ LYDRY L N IE+PQ Sbjct: 109 GENEGRLLRGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNQPIELPQHM 168 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E + AV+FY+++S F +C+TPTL N+ T QLSSCF+ + PD++ Sbjct: 169 FMAIAMFLAQNENDCNAWAVKFYDMISQFEVICATPTLANARTTRHQLSSCFIGSTPDNI 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF A +E A+L+KY GG+G D++ VRGLG++I G + GV+PFLK+AND A+AV+Q Sbjct: 229 EGIFDAYKEMALLSKYGGGIGWDFSQVRGLGSYIDGHKNAAGGVVPFLKIANDVAIAVDQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH DV EF+DLRKN+G++RRR HD+ A WI DLFMKRV N WT Sbjct: 289 LGTRKGAIATYLEVWHNDVFEFIDLRKNSGEERRRAHDLFPALWICDLFMKRVEANEFWT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P + +L +LYG+EFE Y YE+ E + ++ A LW+K+LT FE+G P+ Sbjct: 349 LFDPYQCPELTELYGEEFEAKYLEYEQ----NEHILKHRVVAKDLWKKILTNYFESGLPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ V Sbjct: 405 LCFKDNANRANPNGHAGIIRSSNLCTEIFQNTNPNHYVVEVEFDDGSKVIYDEKQEVELD 464 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 + NL + + + + + A+ Sbjct: 465 NGVRKAANKITSVDSLLGKKVFITTRIAQGGDTAVCNLASVNLSKIHTKEDIERVLPIAI 524 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E + DE ME Sbjct: 525 RMLDNVIDLNFYPNRKVKVTNKKNRAIGLGVMGEAEMLACAKIEWGSDEHLAKIDEVMEL 584 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 ISF+AIS+S +LAQE+G Y F GS W +G+ PID A + + + W+ L Sbjct: 585 ISFYAISSSSDLAQEKGKYPQFDGSNWSKGIMPIDLASKEALKLVDRGGLFSQQCDWESL 644 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +K+VKT G+RN MAIAPT++I+ + G +Q+I+P Y+ +++ N+SG VV L Sbjct: 645 RKKVKTQGIRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWLEENLSGMIPVVVPHL--- 701 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 D + +A++ID LI++A+ RQKWIDQ Sbjct: 702 ----------------------------SADTWNYYISAYDIDQTLLIKAAAVRQKWIDQ 733 Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QS N++ LD+ SGK L+ IY AW +GLK+TYYLRS+S Sbjct: 734 GQSTNVFVRLDKASGKMLNDIYMLAWRLGLKSTYYLRSQS 773 >gi|319936386|ref|ZP_08010802.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1] gi|319808501|gb|EFW05053.1| ribonucleoside-diphosphate reductase [Coprobacillus sp. 29_1] Length = 835 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 271/913 (29%), Positives = 436/913 (47%), Gaps = 123/913 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KRNG +D KI AI+KAF + + ++N+ ++ + Sbjct: 1 MLIQKRNGLYQDYDRHKIENAIIKAFEGIHETIHQQH------LENILNDVEDQIQER-- 52 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 + +E IQD+VE +LM+ G+ ++ + Y+LYRE+ +R I ++++ Sbjct: 53 ----ISVEYIQDKVEEALMRHGYLQVAKAYILYREKHHHLR---------IVIEELMQML 99 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207 D+G +++ + L +L K Y +G+++ D L+ +S Sbjct: 100 NDEGIESLL--IKIQKDYPQTEYSL------QLLLVKLKTFYKEGMNQHDAFKMLMKASV 151 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 LI K+ P + K++ARFL + + + + + + ++ L +E Sbjct: 152 ELISKDAPEWEKISARFLTYDIHQRIQEKMETMGIYSFYDKLVYL--------TKENYYG 203 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVA 325 + E D+ L + +K ER+ F Y GL+++ RY + +E PQ FM +A Sbjct: 204 DYILEHYSHKDIQELESYMKDERNEVFTYSGLELIMKRYLIQDRNRDILEKPQEMFMGIA 263 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LA+KE EK K A + Y++LS+ +TPT+ N+ Q+SSCF+ TV D L GI+ Sbjct: 264 MHLAMKEKEKVKWAKDIYDILSTLKVTMATPTMSNARKPFHQMSSCFIDTVDDSLAGIYK 323 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 +L A ++K+ GG+G + VR G+ I G G + GVI +LK+ NDTA AV+Q G R+ Sbjct: 324 SLDNFAKVSKHGGGMGLYFGKVRANGSSIRGFKGAAGGVIRWLKLVNDTATAVDQLGVRQ 383 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFS 503 GA YL+ WH D+ EFL +R N GDDR + HD+ A PDLF K + W + Sbjct: 384 GAAAVYLDAWHRDLPEFLQIRTNNGDDRMKAHDIFPAVCYPDLFWKLAKSDLDASWYMMC 443 Query: 504 PDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 P E+ ++ D YG+E+E Y E R +S + R ++ L ETG Sbjct: 444 PHEIHEVKGYYLEDTYGEEWERKYYECVED----ERISKRVMSVKDIVRLIIKSLVETGT 499 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---------------------- 596 P+ +D N +P H G+++ SNLC+EI N SS E Sbjct: 500 PFAFNRDHVNRMNPNAHQGMIYCSNLCSEIAQNMSSMEILPHEQIQIDGETIVVEKTKPG 559 Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 VCNL S+ L + +L I +R LDNVID+N + + AK +N +R Sbjct: 560 DFVVCNLASLTLGHIDVK---NDKELQHIIYVVMRALDNVIDLNYYPVPYAKITNQKYRP 616 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG G+ L L + + S E +E D+ E I+++A+ AS LA+E+G Y F GS Sbjct: 617 VGLGTSGYHHMLVKLGMTFESHEHLEFVDQLYEKINYYALEASCALAKEKGKYDYFDGSD 676 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 +D G W L+ + G+RN +A+APT++ + I Sbjct: 677 FDTG--------------AYFEKRHYQSSSWQVLQNDIHEYGLRNGYLLAVAPTSSTSII 722 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + ++DP + +++ T V +L + W Sbjct: 723 AGTTAAVDPIMKKFFMEEKKGSMMTRVAP----DLNMKTFW------------------- 759 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A ID W+IE+A RQ+ IDQ+QS+NLY+ +E + +KL +Y +AW Sbjct: 760 --------LYKNAHHIDQQWVIEAAGIRQRHIDQSQSVNLYITNEFTFRKLLDLYIKAWE 811 Query: 895 MGLKTTYYLRSRS 907 G+KT YY+RS+S Sbjct: 812 KGVKTLYYVRSQS 824 >gi|32267273|ref|NP_861305.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter hepaticus ATCC 51449] gi|32263326|gb|AAP78371.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC 51449] Length = 791 Score = 532 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 298/826 (36%), Positives = 439/826 (53%), Gaps = 104/826 (12%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 + + +G + + +++ A GL+ VS + + D ++ +++ L Sbjct: 3 DTITVTKRNGRIEPLDIAKIQKHTYAAVEGLEGVSQSELEVDAKILFKDKITTEEIQQTL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ I+ PN++ V AR L L +V Y + + + Sbjct: 63 IKTAVDKIDVNTPNWSFVAARLFLYDLYHKVTGWTG--------------YKKLEEYFEQ 108 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + +L+ +DL +L + +K ERD F YLG++ LYDRY L N IE+PQ Sbjct: 109 GEREGKLISGIKEKYDLAFLDSHIKPERDLQFNYLGIKTLYDRYLLKDSNNRPIELPQHM 168 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E + AV+FYN++S F +C+TPTL N+ T QLSSCF+ + PD++ Sbjct: 169 FMAIAMFLAQNEKDCNAWAVKFYNMISLFEVICATPTLANARTTRHQLSSCFVGSTPDNI 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF A +E A+L+KY GG+G D++ VRGLG+ I G + GV+PFLK+AND A+AV+Q Sbjct: 229 EGIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKIANDVAIAVDQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH D+ +F+DLRKN+G++RRRTHD+ A WI DLFMKRV N WT Sbjct: 289 LGTRKGAIATYLEIWHNDIHDFIDLRKNSGEERRRTHDLFPAIWICDLFMKRVESNEFWT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E +L +LYG+ FE Y YE+ + + +I A LW+K+LT FE+G P+ Sbjct: 349 LFDPYECPELTELYGEAFEAKYIEYEQ----SDKVLKSRILAKDLWKKILTNYFESGLPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601 + FKD N +P H G++ SSNLCTEI N++ V Sbjct: 405 LCFKDNANRVNPNAHAGIIRSSNLCTEIFQNTNPNHYVVEVEFEDGSKVVYEEKEEVKLD 464 Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + A+ Sbjct: 465 NGMCKRANKITSVDSINGRKVFITSRIAQGGATAVCNLASVNLSKINTKEDIERVLPIAI 524 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L HI + S E + DE ME Sbjct: 525 RMLDNVIDLNFYPNRKVKVTNMQNRAIGLGVMGEAEMLARSHIDWGSEEHLIKIDEIMEL 584 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 +SF+AI +S LAQE+G Y F+GS W +G+FPID A + + + W+ L Sbjct: 585 VSFYAIESSANLAQEKGKYPQFEGSNWSKGIFPIDMANKEALKIVDRGGLFSQQCDWESL 644 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + +VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 645 RAKVKTQGMRNGYLMAIAPTSSISILVGTTQTIEPVYRKKWYEENLSGLIPVVVPHL--- 701 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 D W+ + +A++I+ +I++A+ RQKWIDQ Sbjct: 702 --NLDTWN--------------------------YYVSAYDIEQTHIIKAAAVRQKWIDQ 733 Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 QS N++ LD+ SGK L+ IY AW +GLK+TYYLRS+S + E+ Sbjct: 734 GQSTNIFVRLDKASGKMLNDIYTLAWKLGLKSTYYLRSQSPEAEEQ 779 >gi|320038060|gb|EFW19996.1| ribonucleoside-diphosphate reductase large subunit [Coccidioides posadasii str. Silveira] Length = 643 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 238/668 (35%), Positives = 363/668 (54%), Gaps = 30/668 (4%) Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 + V + + + +Y G++ +L+ ++ + P+YA + AR + L ++ Sbjct: 2 EHVDAAAITQKVISGVYQGVTTIELDNLAAETAAYMTVTHPDYAILAARIAVSNLHKQTK 61 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293 + LY + ++ L + + Y+RDF + Sbjct: 62 KQFSSV--------IDDLYHYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYDRDFNY 113 Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 +Y G + L Y L ING E PQ MRVA+G+ ++ EK A+E YNL+S F Sbjct: 114 QYFGFKTLERSYLLRINGKVAERPQHMIMRVAVGIHGEDIEK---AIETYNLMSQKFFTH 170 Query: 354 STPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTLFN+GT PQ++SCFL + D + GI+ L+ A+++K +GG+G + +R G+ Sbjct: 171 ASPTLFNAGTPQPQMASCFLIDMKEDSIEGIYDTLKTCALISKTAGGIGLNVHRIRATGS 230 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 +I GTNG S G+IP L+V N+TA V+QG KR GA YLE WH D+ EFLDLRKN G Sbjct: 231 YIAGTNGSSNGIIPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHSDIFEFLDLRKNHGK 290 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + R D+ A W PDLFMKRV +N WTLF P+E L D+YG EFE YE YE+ Sbjct: 291 EEVRARDLFLALWTPDLFMKRVEKNGDWTLFCPNEAPGLADVYGDEFEALYEQYEK---- 346 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 E + + I A LW +L ETG+P++ +KD CN +S Q+++G + SSNLCTEI Sbjct: 347 -EGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTIRSSNLCTEIIEY 405 Query: 592 SSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 +S +E AVCNL S+ L + + +D+ KL + VR L+ +ID N + + +A+KS Sbjct: 406 TSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQVLVRNLNKIIDGNHYPVPEARKS 465 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N HR I +G+ G A L +P+ SPEA ++ + E I A++AS ++A+ G Y Sbjct: 466 NFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKVDGPYE 525 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +++GS QGV D + T WD LK+ + G+RNS +A PT Sbjct: 526 TYEGSPVSQGVLQYDMWNVTP----------TDLWDWDSLKRDIAKHGVRNSLLVAPMPT 575 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 A+ + I G ++ +P N+Y + ++G+F VVN +L+ +L LW + M + + G Sbjct: 576 ASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGG 635 Query: 830 SIGNIERI 837 SI +I I Sbjct: 636 SIQSIPNI 643 >gi|325859752|ref|ZP_08172882.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella denticola CRIS 18C-A] gi|325482678|gb|EGC85681.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella denticola CRIS 18C-A] Length = 840 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 264/917 (28%), Positives = 435/917 (47%), Gaps = 126/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG +++ +KIS AI K+F++ + I + + + + N Sbjct: 1 MEITKRNGEKEAYNNNKISTAIKKSFISTGKNVP------DNEIAGMVSKV-EQFITDNP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 +EDIQ++VE LM+ GH++ + Y+L+R +R++ R A ++ D +A L Sbjct: 54 ELRT--VEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINYIAWAVDDRQLADVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + +++ L+ G+S D ALI + Sbjct: 112 HRVAHEYRERAYSMVTLQEKFASFSK-------------------PGMSHRDAIDALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + ++AR L + +++ + K + + EEG+ Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEQKISRLEDELGLKTFYRK--------VKYMTEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + ++ + ++ A+ ++ ER+ Y GL +L RY + +G IE Q F+ Sbjct: 205 YGDYILQNYSEEEINEAASFIRPERNKLLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLG 264 Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +A+ LA+ E + Y+LLS +TPTL N+ + QLSSCF+ TVPD L Sbjct: 265 IALHLAMPEKKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLD 324 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q Sbjct: 325 GIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 384 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499 G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W Sbjct: 385 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNW 444 Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLF P+E+ L D YG+E+E Y + R IS + R +L Sbjct: 445 TLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR----RVISIKDIVRLVLRSAV 500 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591 ETG P+ +D N +P H G+++ SNLCTEI N Sbjct: 501 ETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTK 560 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + E VCNL S++L D +++ + T VR LDNVI +N + + A+ +N Sbjct: 561 TRPGEFVVCNLASLSLGRL---PLEDEEQMKEKVATVVRALDNVISLNFYPVPYARITNQ 617 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS +LA+E+G+Y F Sbjct: 618 RYRSIGLGVSGYHHALAKRRIKWESEEHLQFMDKVFEIINRAAILASSDLAKEKGSYQFF 677 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 +GS W G W ++++ V GMRN+ +A+APT++ Sbjct: 678 EGSDWQTG--------------AYFDKRGYDNAEWKDVRRTVARQGMRNAYLLAVAPTSS 723 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + +DP + +++ V Sbjct: 724 TSIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP--------------------------- 756 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 + D+ ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ +Y Sbjct: 757 ----ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYL 812 Query: 891 QAWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 LAWKNGVKTLYYVRSKS 829 >gi|257461040|ref|ZP_05626138.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter gracilis RM3268] gi|257441414|gb|EEV16559.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter gracilis RM3268] Length = 790 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 299/866 (34%), Positives = 431/866 (49%), Gaps = 132/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA GL++VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKYTSEAVEGLENVSLSELEVDAKIQFRDMITTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L +V + Sbjct: 61 TAVEKIDVDRPNWTFVAARLFLYDLYHKVTGFSGYNSLEDYFA--------------RGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFM 322 R++ +DL L + L+ +RD F YLG++ LYDRY + G+ IE+PQ FM Sbjct: 107 AAGRIMLGLKEKYDLEDLNSYLQPQRDLQFNYLGIKTLYDRYLIKDKSGAPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNELDCQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKR+ WTLF Sbjct: 287 TRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHEIFPALWINDLFMKRLQSGGKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P EVSDL DLYG EFE YE YE + I A LW+K+LT FETG P++ Sbjct: 347 DPAEVSDLSDLYGAEFEARYEQYEADDKISKS----TILAKELWKKILTSYFETGMPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P H G++ SSNLCTEI N++ + Sbjct: 403 FKDNANRINPNAHQGLIRSSNLCTEIFQNTAPNHYKIKVVFADGSERLFEENEDVRTDAG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + +++A + AVR+ Sbjct: 463 IVKKAKKITALDTLGGKEIFIVEKGCSEGATAVCNLASVNLSKINSREEIARVMPIAVRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L + + S E E+ D ME +S Sbjct: 523 LDNVIDLNFYPHAKVKHTNLKTRAIGLGVMGEAQMLAERGVKWGSYEHFELIDRIMENVS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELK 750 F+AI AS LA E+G Y F GS W +G+FPID A+ + + S WD L+ Sbjct: 583 FNAIKASSNLAVEKGRYPDFAGSKWSEGIFPIDLANENAKALVKRGGLFEQSSCDWDGLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + A+E+D L+++ + RQKWIDQ Sbjct: 695 -----------------------VPNLSPKTWQAYVPAYELDQRLLVKAGAIRQKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN+++ + SG L IY AW +GLK+TYYLRS S KLN V Sbjct: 732 QSLNIFMSLDKASGGYLSEIYTLAWQLGLKSTYYLRSES----------PDSEKLNNVAD 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 782 RSI-----------------ECEGCQ 790 >gi|313683663|ref|YP_004061401.1| ribonucleoside-diphosphate reductase class ia alpha subunit [Sulfuricurvum kujiense DSM 16994] gi|313156523|gb|ADR35201.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Sulfuricurvum kujiense DSM 16994] Length = 788 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 284/866 (32%), Positives = 431/866 (49%), Gaps = 133/866 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L I+ +G + +++ A GL +VS + + DG+ ++++ LI Sbjct: 1 MLTIVKRNGRREPLDITKIQKYTSAAVKGLSNVSQSELEVDAQIQFRDGIHSNEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V +R L L V Y + Sbjct: 61 KTAVDKIDIDSPNWTFVASRLFLYDLYHRVNGFTG--------------YGSLQSYFERG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 + R+L ++L L + ERD F YLG++ LYDRY + G IE+PQ F Sbjct: 107 EGEGRILLGLKEKYNLADLDAYIVPERDLEFNYLGVKTLYDRYLIKDRKGDPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M VAM LA E++++ A +FY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAVAMFLAQNESDRQGWAKKFYDMMSKFEVMMATPTLSNARTTRHQLSSCYIGSSPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF A +E A+L+K+ GG+G DWT VR +G+ I G + G +PFLK+ ND A+AV+Q Sbjct: 227 GIFDAYKEMALLSKFGGGIGWDWTQVRAMGSFIDGHKNAAGGTVPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH+DV++FLD++KN+G++RRR HD+ A WI D+FMKRV ++ WT+ Sbjct: 287 GTRKGAIAVYLEPWHMDVKDFLDVKKNSGEERRRAHDLFPALWINDMFMKRVVEDGIWTM 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P +V +L +LYG FE Y E+ + A LW+K+LT FETG P++ Sbjct: 347 FDPFDVKELSELYGDAFEKRYLELEQDPSIPKEHS----KAKDLWKKILTSYFETGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ + Sbjct: 403 CFKDSANRSNPNDHFGIIRSSNLCTEIFQNTQPNHYLIKIKFEDGSFVTYEEDEIVKVDS 462 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + A+R Sbjct: 463 GIEKPANKITALDSLGGRPIYIVEKEKVDGATAVCNLASVNLSRVHTKEDIDRIVPVAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID+N + +EK K++N RAIGLG+MG L I + S E + DE ME + Sbjct: 523 ALDNVIDLNFYPLEKVKRTNMRSRAIGLGVMGEAQMLAENRIVWGSQEHFDKVDEVMEAV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AI AS +LA E+G+Y+ ++GS W +G+ P+D + + WDEL+ Sbjct: 583 SYNAIKASSDLAVEKGSYAEYQGSKWSRGILPMDHATAEVQNLVDRGGLFAPNYEWDELR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + +K GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 ETIKRQGMRNGYLMAIAPTSSISILTGTTQTIEPIYKRKWFEENLSGLIPVVAP------ 696 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 ++ D + A+++D L+++A+ RQKWIDQ Sbjct: 697 -------------------------KLSPDTWSYYTPAYDLDQTILVKAAAIRQKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN+++ + SGK L+ IY AW +GLK+TYYLRS+S ++ T Sbjct: 732 QSLNIFITLDKASGKYLNDIYMLAWKLGLKSTYYLRSQSPEQ-KQDTADRSM-------- 782 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 783 --------------------ECEGCQ 788 >gi|319955827|ref|YP_004167090.1| ribonucleoside-diphosphate reductase class ia alpha subunit [Nitratifractor salsuginis DSM 16511] gi|319418231|gb|ADV45341.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Nitratifractor salsuginis DSM 16511] Length = 791 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 294/819 (35%), Positives = 431/819 (52%), Gaps = 104/819 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K++ +G + + +++ A GL VS + + D +S +++ LI Sbjct: 1 MIKVVKRNGRVEPLDVSKIQKYTSAAVEGLDGVSQSELEVDAKLQFRDMISTEEIQLTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L + +V Y + Sbjct: 61 KTAVDKIDIDQPNWTFVAARLFLYDIYHKVSGFTG--------------YIHLRDYFDRG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 + R+L +DL L + +K ERD F YLG++ LYDRY L G IE+PQ F Sbjct: 107 EKEGRILLGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRQGQPIELPQHLF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M VAM LA E + + A +FY++LS F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTTRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF +E A+L+K+ GG+G DWT VRG+G++I G + G++PFLK+AND A+AV+Q Sbjct: 227 GIFDGYKEMALLSKFGGGIGWDWTQVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WHIDV +FLDL+KN+G++RRR HD+ A WI DLFMKRV ++ WTL Sbjct: 287 GTRKGAIAVYIEPWHIDVRDFLDLKKNSGEERRRAHDLFPALWINDLFMKRVQEDGIWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P EV +L DLYG+EFE Y E+ E +SA LW+++L FETG+P++ Sbjct: 347 FDPYEVKELTDLYGEEFEKRYLELEQD----ESITKEVVSAKQLWKEVLRSYFETGNPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P +H GV+ SSNLCTEI N+S + Sbjct: 403 CFKDAANRANPNRHAGVIRSSNLCTEIFQNTSPNHYRMKIIFEDQSVTYFEEEEMVTVDS 462 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + +A + TA+R Sbjct: 463 GVTKPAKKITALDTLDGKKIWMVEKDPVDGETAVCNLASVNLSKINTPEDIARVVPTAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + + K KK+N R+IGLG+MG L I + S E DE ME + Sbjct: 523 MLDNVIDLNFYPLGKVKKTNEKSRSIGLGVMGEAQMLAEAGIEWGSSEHFHKIDEVMESV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AI AS +LA E+G Y +F+GS W +G+FPID A + W+ L+ Sbjct: 583 SYYAIKASSDLALEKGCYPNFEGSDWSKGIFPIDKANPEACKLVDRGGLFGYTHDWEALR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKNDGMRNGYLMAIAPTSSISILTGTTQAIEPVYKRKWYEENLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + +E+D L+ + + RQKWIDQ Sbjct: 695 -----------------------VPNLNPDTWAYYTPCYELDQRLLVRAGAIRQKWIDQG 731 Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QSLN++ LD+ SG+ L+ IY +AW GLK+TYYLRS+S Sbjct: 732 QSLNIFIRLDKASGRYLNDIYMEAWKFGLKSTYYLRSQS 770 Score = 39.8 bits (91), Expect = 2.5, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 20/80 (25%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++V+KRNG V D SKI + A AVEG + + +L Sbjct: 2 IKVVKRNGRVEPLDVSKIQK-YTSA--AVEGLDG---------VSQSELEVDAKLQFR-- 47 Query: 89 SALIVHIEDIQDQVECSLMQ 108 ++ E+IQ +L++ Sbjct: 48 --DMISTEEIQ----LTLIK 61 >gi|327312836|ref|YP_004328273.1| ribonucleoside-diphosphate reductase subunit alpha [Prevotella denticola F0289] gi|326945781|gb|AEA21666.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella denticola F0289] Length = 840 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 265/917 (28%), Positives = 435/917 (47%), Gaps = 126/917 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG ++D +KIS AI K+F++ + I + + + + N Sbjct: 1 MEITKRNGEKEAYDNNKISTAIKKSFISTGKNVP------DNEIAGMVSKV-EQFITDNP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSK---SDAPIAPKL 145 +EDIQ++VE LM+ GH++ + Y+L+R +R++ R A ++ D +A L Sbjct: 54 ELRT--VEDIQNRVEKCLMEHGHYEEAKNYILFRHQRNEQRQAINYIAWAVDDRQLADVL 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + +++ L+ G+S D ALI + Sbjct: 112 HRVAHEYRERAYSMVTLQEKFASFSK-------------------PGMSHRDAIDALIKA 152 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L E P + ++AR L + +++ + K + + EEG+ Sbjct: 153 AVELTTPEAPAWEMISARILSYRSEQKISRLEDELGLKTFYRK--------VKYMTEEGL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + ++ + ++ A+ ++ ER+ Y GL +L RY + +G IE Q F+ Sbjct: 205 YGDYILQNYSEEEINEAASFIRPERNELLNYSGLDLLLKRYVIKNYSGKVIERVQEMFLG 264 Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +A+ LA+ E + Y+LLS +TPTL N+ + QLSSCF+ TVPD L Sbjct: 265 IALHLAMPEKKENRLLWVQRIYDLLSRLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLD 324 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ +L + ++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q Sbjct: 325 GIYRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQL 384 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGW 499 G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W Sbjct: 385 GMRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAICYPDLFWKMAEEDLNQNW 444 Query: 500 TLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLF P+E+ L D YG+E+E Y + R IS + +L Sbjct: 445 TLFCPNEIMRIKGYCLEDCYGEEWERRYLDCINDQRLSR----RVISIKDIVHLVLRSAV 500 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----------------------- 591 ETG P+ +D N +P H G+++ SNLCTEI N Sbjct: 501 ETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMAPIETISKEIETEDGDTVVVTK 560 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + E VCNL S++L D +++ + T VR LDNVI +N + + A+ +N Sbjct: 561 TRPGEFVVCNLASLSLGRL---PLEDEEQMKEKVATVVRALDNVISLNFYPVPYARITNQ 617 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R+IGLG+ G+ AL HI + S E ++ D+ E I+ AI AS +LA+E+G+Y F Sbjct: 618 RYRSIGLGVSGYHHALAKRHIKWESEEHLQFMDKVFETINRAAILASSDLAKEKGSYQFF 677 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 +GS W G W ++++ V GMRN+ +A+APT++ Sbjct: 678 EGSDWQTG--------------AYFDKRGYDNAEWKDVRRTVARQGMRNAYLLAVAPTSS 723 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + +DP + +++ V Sbjct: 724 TSIIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP--------------------------- 756 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 + D+ ++ +A+ I+ W + ++ RQ+ IDQAQS+NLY+ ++ + +++ +Y Sbjct: 757 ----ELSDETYWMYKSAYLINQKWSVRASGIRQRHIDQAQSMNLYITNDFTMRQVLDLYL 812 Query: 891 QAWLMGLKTTYYLRSRS 907 AW G+KT YY+RS+S Sbjct: 813 LAWKNGVKTLYYVRSKS 829 >gi|196229991|ref|ZP_03128855.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter flavus Ellin428] gi|196226317|gb|EDY20823.1| ribonucleoside-diphosphate reductase, alpha subunit [Chthoniobacter flavus Ellin428] Length = 791 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 341/779 (43%), Positives = 475/779 (60%), Gaps = 57/779 (7%) Query: 30 QVIKRN------G--GVTSFDPSKISRAIMKA-FMAVEGKGASRSIRVQDIIKNLTEQTV 80 QVI+R+ G V + KI++A+ A F VEG+ ++VQ I+ Sbjct: 24 QVIRRDLPGDTSGKPRVVPWLGHKIAKAVSAACF--VEGQDDQIGVQVQAEIEY------ 75 Query: 81 TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140 RL + S VHIE +QD VE +L+ GH K+ Y YR R+ R Sbjct: 76 -RLRRERPS--FVHIEQLQDMVEETLIDLGHAKVALVYGKYRARRAAERE---------- 122 Query: 141 IAPKLKIMMDDGTLISF----NSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSE 195 ++ DDG + + + A GL+ ++ +L+ ++ L+ Sbjct: 123 -HGIGPVIEDDGQQLELATREQLGDIRARISFAKIGLKVTLNDDDLLARLLRSTSISLTP 181 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 + ++ ++++L++ + + AR LL + E L +A ++ + + Sbjct: 182 VERRDTIVLNAKSLLDVDADARFFAARILLSYIYEETLPWKVADGPQA----LKEAHRKA 237 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING---- 311 F YI G+ L + +FDL LA L D F++LG+Q LYDRY +H + Sbjct: 238 FLEYIPRGIALGRLEPRLAEFDLKKLATALDPFADLQFDFLGIQTLYDRYLIHTHDSVTG 297 Query: 312 --SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 R+E PQ F+MRVAMGL+++E E+E+RA +FY + S STPTLFN+GT HPQLS Sbjct: 298 RKQRMEAPQVFWMRVAMGLSVQEPEREERAGQFYGIYKSRRACSSTPTLFNAGTMHPQLS 357 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC+L D + I + + L+K++GGLG WT +RG GAHIHGTNG+S GVIPFLK Sbjct: 358 SCYLLYCGDSIEEITETWRRFSHLSKWAGGLGCSWTAIRGAGAHIHGTNGESSGVIPFLK 417 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 V+ND A+AVNQGGKR GA+C+YLE WH D+E+FLDLRK TGDDRRRTH+MNTA+WIPDLF Sbjct: 418 VSNDIAIAVNQGGKRPGALCSYLELWHADIEDFLDLRKETGDDRRRTHNMNTAHWIPDLF 477 Query: 490 MKRVTQNAG--------WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 MKR+ + W+LF E DL +L G+ FE Y YE A G++ RK+ Sbjct: 478 MKRLKAISDGTLTKEATWSLFRTSETPDLPELSGRAFEERYLQYEALAAEGKLW-SRKVR 536 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 +ALW++ML MLFETGHPW+TFKDPCN+RSPQ H GV+H+SNLCTEITLN+SS+E AVCN Sbjct: 537 VLALWKRMLEMLFETGHPWMTFKDPCNLRSPQDHTGVIHNSNLCTEITLNTSSDEVAVCN 596 Query: 602 LGSINLLAHFANNQF-DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L SINL AH + D+D+L +TI +R+LDNVIDIN + ++ A +N HR +GLGL Sbjct: 597 LASINLAAHLREDGALDHDRLRATITVLMRMLDNVIDINFYPVDAAANANLRHRPVGLGL 656 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG Q AL+ I + +PEAV DE++E I+++A AS +LA ERG Y ++ GS WD+G+ Sbjct: 657 MGLQDALYDKGIAFDTPEAVAFNDEALEAIAYYAYEASSDLAAERGRYQTYAGSKWDRGL 716 Query: 721 FPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 P+D++ L + R L ++RTSRL W L++++ GMRNSNC+AIAPTATI+NI G Sbjct: 717 MPLDTLAHLEQQRGVPLMVDRTSRLDWTALRQKIAQQGMRNSNCLAIAPTATISNILGA 775 >gi|152989805|ref|YP_001355527.1| ribonucleotide-diphosphate reductase subunit alpha [Nitratiruptor sp. SB155-2] gi|151421666|dbj|BAF69170.1| ribonucleoside-diphosphate reductase, alpha subunit [Nitratiruptor sp. SB155-2] Length = 789 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 285/828 (34%), Positives = 440/828 (53%), Gaps = 111/828 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++++ +G + + +++ + AC GL+ VS + + DG++ +++ LI Sbjct: 1 MIRVVKRNGRVEPLDITKIQKYTKAACEGLEGVSQSELEVDAKIQFRDGITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V AR L L +V Y + + Sbjct: 61 RTAVDKIDVDRPNWSFVAARLFLYDLYHKVSGFTG--------------YRHLREYFEKG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 + R++ +DL L + +K ERD F YLG++ LYDRY L N + IE+PQ F Sbjct: 107 EKEGRIIPGLKEKYDLDDLNDYIKPERDLQFTYLGIRTLYDRYLLKDRNNNPIELPQQLF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M VAM LA E + + A FY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAVAMFLAQNELDCQSWAKRFYDVISKFEVMVATPTLSNARTTRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+KY GG+G DW+ VR +G++I G + G++PFLK+ ND A+AV+Q Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDWSRVRAMGSYIDGHKHAAGGIVPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+++F+DL+KN+G++RRR HD+ A WI DLFMKRV ++ WTL Sbjct: 287 GTRKGAIAVYIEPWHMDIKDFIDLKKNSGEERRRAHDLFPALWINDLFMKRVAEDGIWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P E SDL +++G+EFE Y YE++ D + ++ A LW+ +L FETG P++ Sbjct: 347 FDPYETSDLTEVWGEEFEKRYLEYEQRDDI----LKEQVRAKELWKLILRSYFETGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600 FKD N +P H G++ SSNLCTEI N+ + Sbjct: 403 CFKDNANKCNPNDHAGIIRSSNLCTEIFQNTEPNYYKIKIKYEDGSVEYYDEEEEIRIDT 462 Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + A+R Sbjct: 463 GIVKKAKKISSIDSINGKKVFIVEKEKVDGLTAVCNLASVNLSKVHTKEDIERVVPIAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +EK KK+N R+IGLG+MG L I + S E + DE ME I Sbjct: 523 MLDNVIDLNFYPLEKVKKTNLQTRSIGLGVMGEAQMLAEHKIEWGSDEHFKKIDEIMEMI 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPW 746 S++AI +S LA E+G Y F+ S W +G+ PID+ A+ R L W Sbjct: 583 SYNAIRSSSNLAVEKGVYPLFENSKWAKGILPIDTANKEAKKLTPDRGGLF---GYIYDW 639 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +EL+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 640 NELREKVKRDGMRNGYLMAIAPTSSISILTGTTQTIEPVYKRKWFEENLSGLIPVV---- 695 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + D + + A+++D LI++A+ RQKW Sbjct: 696 ---------------------------VPNLSPDTWQYYTPAYDLDQRLLIKAAAVRQKW 728 Query: 867 IDQAQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 IDQ QS+N++ LD+ SG+ L IY AW +GLK+TYYLRS+S + Sbjct: 729 IDQGQSVNIFIRLDKASGRYLHEIYTLAWKLGLKSTYYLRSQSPEVAQ 776 >gi|299144103|ref|ZP_07037183.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518588|gb|EFI42327.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 843 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 272/920 (29%), Positives = 437/920 (47%), Gaps = 116/920 (12%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 + KR+G + FD +KI +AI+KA+ +++ + +++I + LL S Sbjct: 3 NIKKRDGRLVEFDRNKIEKAILKAYKSLDRE------PDENVINEMACSVENLLLNKFPS 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 I +E+IQD VE +L+++ +++ + Y+LYR + + R + I+ Sbjct: 57 NHIATVEEIQDLVEITLIENRQYEVVKSYILYRAQHTMNRKIIEKFSEYITDNNVIDIIR 116 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 D I + R + + + + +++ A+I ++ L Sbjct: 117 D----IQNDFDR------------THYDIEQLFLKWNSFLKKDMTQRQYLLAIIKAAAEL 160 Query: 210 IEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 KE PN+ ++ARF++ + K+ K + +++ L +EG+ Sbjct: 161 TSKESPNWEYISARFMVYDNNSSIKQNSEKRGIKNFYDKIKTL--------TDEGLYGDY 212 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMG 327 + + + D+ L + RD F Y GL ++ RY + G+ +E Q FM ++M Sbjct: 213 ILKEYTEEDINELEVYMDSSRDKLFNYSGLDLIVKRYLIRDSEGNVLENIQEMFMGISMH 272 Query: 328 LALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E K A + Y++LS+ +TPT+ N+ + QLSSCF+ VPD L GI+ Sbjct: 273 LAIPEGNNKVSFAKKLYDILSTLKITVATPTMSNARKPYHQLSSCFIDIVPDSLTGIYRT 332 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GV+ ++++ NDTAVAV+Q G R+G Sbjct: 333 IDNFAQVSKHGGGMGIYFGKVRSQGSDIRGFKGVAGGVVRWIRLTNDTAVAVDQLGVRQG 392 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504 +V YL+ WH D+ EFL LR N GDDR++ HD+ A PDLF + N W LF P Sbjct: 393 SVAVYLDVWHKDMPEFLQLRTNNGDDRQKAHDVFPAVSYPDLFWRLAKNNIEATWYLFDP 452 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ L D YG E+E Y R IS + R ++ L ETG P Sbjct: 453 HEIEQIMGYKLEDYYGDEWEKRYYECVNNNKLSR----RTISVKDMIRLIIVSLTETGTP 508 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 + +D N +P +HVG+++SSNLCTEI N + E Sbjct: 509 FTFNRDAANKANPNKHVGMIYSSNLCTEIMQNMKAIETMDTRIEEINKDSYITKVTKAGD 568 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L N D +L + + VR LDNVID+N + + A+ +N +RAI Sbjct: 569 FVVCNLASLVLGNI---NLEDEKELENIVSITVRALDNVIDLNYYPVPYAEITNQKYRAI 625 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG G+ AL I ++S E +E D+ E I++ AI AS E+A+E+GAY F GS W Sbjct: 626 GLGTSGYHHALVQRGIMFSSEEHLEFMDKIYENINYFAIKASSEIAKEKGAYKYFNGSEW 685 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + G + S W +L++ V+ G+RN+ MAIAPT + + I Sbjct: 686 ESG--------------EYFRRRDYSSNRWKDLQESVRVNGLRNAYLMAIAPTGSTSIIA 731 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 G S +DP + +++ V L + W+ Sbjct: 732 GTSAGVDPVMKRYFLEEKKGSIIPRVAPG----LNAKTFWN------------------- 768 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLM 895 + A E+D W+I +AS RQ+ IDQ QS+NLY+ + + +K+ + A M Sbjct: 769 --------YENAHEVDQDWIIRAASIRQRHIDQGQSVNLYITTDYTMRKILNLLISANEM 820 Query: 896 GLKTTYYLRSRSATSVEKST 915 G+K+ YY+R +S E T Sbjct: 821 GIKSIYYVRGKSLEVEECDT 840 >gi|260591986|ref|ZP_05857444.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella veroralis F0319] gi|260536270|gb|EEX18887.1| ribonucleoside-diphosphate reductase, alpha subunit [Prevotella veroralis F0319] Length = 840 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 264/915 (28%), Positives = 435/915 (47%), Gaps = 122/915 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + +IKRNG ++ +KI+ AI K+F++ I+ ++I + E V +++ N Sbjct: 1 MDIIKRNGESERYNNNKIAIAIKKSFISTGK-----PIKDEEIAAMVAE--VEQIIIDNP 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E+IQ+QVE LM GH+ + ++L+R +R++ R A + A ++ Sbjct: 54 DQRT--VEEIQNQVEKHLMMHGHYDEAKNFILFRYQRNEQRKAINDIARMADDTELTTVL 111 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207 D A + V S + L E + N+ +S + LI ++ Sbjct: 112 QD-----------------VAREYRERVYSMVTLQEKFANLCKPSMSHKEAIDTLIKAAV 154 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L E P + ++AR L + +++ + +++++ + E Sbjct: 155 ELTTPEAPAWEMISARILSYRAEQKIKKQEDEIGIDGFYNKLKYMTSEGL--------YG 206 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 + ++ + ++ A +K ER+ Y GL +L RY + G IE Q ++ +A Sbjct: 207 EYILQNYTEEEINEAATFIKEERNKLLNYSGLDLLLKRYVIKNYAGKAIERVQEMYLGIA 266 Query: 326 MGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 + LA+ E + Y++LS +TPTL N+ + QLSSCF+ TVPD L GI Sbjct: 267 LHLAMPEQKENRLMWVHRIYDMLSKLEVTMATPTLSNARKPNHQLSSCFIDTVPDSLDGI 326 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + +L + ++K+ GG+G + VR G +I G G + GVI ++++ NDTAVAV+Q G Sbjct: 327 YRSLDNFSQVSKFGGGMGMYFGKVRATGGNIRGFKGVAGGVIRWMRLVNDTAVAVDQLGM 386 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K +N W L Sbjct: 387 RQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWKMADENLDQNWYL 446 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 F P+E+ L D YG+E+E Y + R IS + R +L ET Sbjct: 447 FCPNEIMRIKGYCLEDCYGEEWERKYLDCVNDQRLTR----RVISIKDIIRLVLRSAVET 502 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SS 593 G P+ +D N +P H G+++ SNLCTEI N + Sbjct: 503 GTPFTFNRDTVNRANPNHHKGMIYCSNLCTEIAQNMAPIETVSKTIETKDGETIVVTTTK 562 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 E VCNL S++L D +++ + T VR LDNVI +N + + A+ +N + Sbjct: 563 PGEFVVCNLASLSLGRL---PLEDEEQMREKVATIVRALDNVISLNFYPVPYAEITNQKY 619 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG+ G+ AL I + S E ++ D+ E I+ AI AS LA+E+G+Y F+G Sbjct: 620 RSIGLGISGYHHALAKRRIKWESEEHLQFMDKVFETINRSAILASSNLAKEKGSYQYFEG 679 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G+ W E++K V GMRN+ +A+APT++ + Sbjct: 680 SDWQTGL--------------YFDKRGYDSDEWKEVRKTVALQGMRNAYLLAVAPTSSTS 725 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP + +++ V Sbjct: 726 IIAGTTAGLDPIMKRFFLEEKKGSMLPRVAP----------------------------- 756 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + D+ ++ +A+ I+ W I+++ RQ+ IDQAQS+NLY+ ++ + +++ +Y A Sbjct: 757 --ELSDETYWMYKSAYLINQKWSIKASGVRQRHIDQAQSMNLYITNDFTMRQVLDLYLLA 814 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY+RS+S Sbjct: 815 WKSGVKTIYYVRSKS 829 >gi|154174561|ref|YP_001407352.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter curvus 525.92] gi|112802438|gb|EAT99782.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter curvus 525.92] Length = 790 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 295/867 (34%), Positives = 437/867 (50%), Gaps = 134/867 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ A +GL++V+ + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKYTTAAVAGLENVNLSELEVDAKIQFRDMITTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L +V + Y+++G Sbjct: 61 TAVDKIDIDRPNWTFVAARLFLYDLYHKVTGFNG---------------YNHLREYLQKG 105 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321 KA + + + +DL L ++ ERD F YLG++ LYDRY + NG+ IE+PQ F Sbjct: 106 EKAGRIIAGLKEKYDLDDLNAYIRPERDLQFAYLGIKTLYDRYLIKDKNGAPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +N W+L Sbjct: 286 GTRKGAIAVYIEPWHMDVADFLDLRKNSGEERRRAHELFPALWINDLFMKRVRENGRWSL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P +VSDL DLYG+ FE YE YE + E + A LW+K+LT FETG P++ Sbjct: 346 FDPAQVSDLCDLYGENFERRYEQYENE----ENIQKNVVLAKELWKKILTSYFETGMPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 CFKDNANKANPNDHEGIIRSSNLCTEIFQNTAPNYYKIKITFDDGGERLFDEEEDVTIDS 461 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + AVR Sbjct: 462 GITKKAKKLSALDSLGGRQIFIVEKESVEGKTAVCNLASVNLSKVNKKADIERVVPIAVR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +K K +N R+IGLG+MG L + + E + D ME I Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGGYEHFALIDSIMENI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV-RDELAMNRTSRLPWDEL 749 S+ AI S LA E+G Y +F+GS W +GV PID+ A+ + + W++L Sbjct: 582 SYQAIYTSSNLAVEKGKYPTFEGSKWSRGVMPIDTANENAKALLNHGGLFDEDTCDWEKL 641 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + +VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG V Sbjct: 642 RAKVKTDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV------- 694 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + D + + A+E+D L+ +A+ RQKWIDQ Sbjct: 695 ------------------------VPNLSPDTWQFYTPAYELDQRVLVRAAAVRQKWIDQ 730 Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 QSLN+++ + SG L IY AW +GLK+TYYLRS S K+N V Sbjct: 731 GQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES----------PDSEKVNNVA 780 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 781 DRSI-----------------ECEGCQ 790 Score = 38.7 bits (88), Expect = 5.4, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEG-----KGASRSIRVQDIIKNLTEQTVTRL 83 ++VIKRNG D SKI + A +E I+ +D+I TE+ L Sbjct: 1 MKVIKRNGRTEELDISKIKKYTTAAVAGLENVNLSELEVDAKIQFRDMIT--TEEIQQTL 58 Query: 84 LQ 85 ++ Sbjct: 59 IK 60 >gi|224372454|ref|YP_002606826.1| ribonucleotide-diphosphate reductase subunit alpha [Nautilia profundicola AmH] gi|223589714|gb|ACM93450.1| ribonucleoside-diphosphate reductase, alpha subunit [Nautilia profundicola AmH] Length = 812 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 291/848 (34%), Positives = 436/848 (51%), Gaps = 129/848 (15%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P + ++ +G + ++ + AC GL+ V + + DG++ ++++ L Sbjct: 3 PGITVIKRNGRREPLDISKIRKYTKAACEGLEGVDYTELELDAKLQFRDGITTAEIQDTL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ I+ + PN+ V AR L L V + Y + Sbjct: 63 IKTAVDKIDIDRPNWNYVAARLFLYDLYHRVTGFTG---------------YNHLKEYFQ 107 Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 +G +A + + + FDL L LK ERD F YLG++ LYDRY + NG IE+PQ Sbjct: 108 KGEEAGRILLGLKEKFDLDDLNAYLKPERDLQFTYLGIKTLYDRYIIKDRNGEPIELPQQ 167 Query: 320 FFMRVAMGLALKETEKE-------------------KRAVEFYNLLSSFHFMCSTPTLFN 360 FM VAM LA ET E A +FY+++S F M +TPTL N Sbjct: 168 LFMGVAMFLAQNETNYESIPEEERANIPNDPKAIRGYWAKKFYDVISKFEVMVATPTLSN 227 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 + T QLSSC++ ++ D++ GIF +E A+L+K+ GG+G D + +R LG+ I Sbjct: 228 ARTTRHQLSSCYVGSMNDNIEGIFDDFKEMALLSKFGGGIGWDVSRIRALGSFIDNHKNA 287 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + GVIP+LK+ ND A+AV+Q G RKGA+ YLE WH+DV +FLDL+KN+G++RRR HD+ Sbjct: 288 AGGVIPWLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDVLDFLDLKKNSGEERRRAHDLF 347 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 A WI DLFMKRV ++A WTLF P EV DL DLYG+EFE Y YE + + I Sbjct: 348 PALWISDLFMKRVQEDALWTLFDPYEVKDLTDLYGEEFEKRYIEYENDPNIAK----ETI 403 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW+K+L +ETG+P++ FKD N R+ H G++ SSNLCTEI N+ V Sbjct: 404 KAKELWKKILLEYYETGNPFLCFKDNANRRNQNDHAGIIRSSNLCTEIFQNTEPNHYKVK 463 Query: 601 NL---GSINLLAHFANNQFDY--------------------------------------- 618 GS N+ + ++ Sbjct: 464 VTFEDGSFNMYDEEEDVTVEHGDVKLTKKAKKITSIDAINGKQVYIVEKVPVNGKTAVCN 523 Query: 619 ------------DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 +K+ + A+R+LDNVID+N + + K K +N +RAIGLG MG Sbjct: 524 LASVNLSKVNTPEKIKEVVPVAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQM 583 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L I + S E +++ DE E IS++AI S EL++E+G Y F+GS W +G+ PIDS Sbjct: 584 LAEKQIFWGSEEHLKLIDEVFEGISYYAIKTSAELSEEKGIYPEFEGSRWSKGILPIDSA 643 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 A+ E + + W+ L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y Sbjct: 644 NEEAKRLVERDLFSAMQYDWEGLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPVY 702 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + + + N+SG VV + + + + Sbjct: 703 KRKWYEENLSGLIPVV-------------------------------VPNLSAETYMFYT 731 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLR 904 A+E+D L+++A+ RQKW+DQ QSLN+++ + SG+ L+ IY W +GLK+ YYLR Sbjct: 732 PAYELDQTVLVKAAAIRQKWVDQGQSLNIFITTDKASGRYLNEIYTLGWKLGLKSFYYLR 791 Query: 905 SRSATSVE 912 S+S E Sbjct: 792 SQSPEVQE 799 >gi|149194866|ref|ZP_01871960.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter mediatlanticus TB-2] gi|149135025|gb|EDM23507.1| ribonucleotide-diphosphate reductase alpha subunit [Caminibacter mediatlanticus TB-2] Length = 813 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 286/844 (33%), Positives = 431/844 (51%), Gaps = 130/844 (15%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P + ++ DG + ++ + AC GL V + + DG++ +++ L Sbjct: 3 PGITVIKRDGRREPLDISKIRKYTKAACEGLDGVDYSELELDAKLQFRDGITTEEIQDTL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ I+ + PN+ V AR L L V + Y E Sbjct: 63 IKTAVDKIDIDKPNWNFVAARLFLYDLYHRVTGYTG---------------YNHLREYFE 107 Query: 262 EGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319 G +A + + + +DL L + +K ERD F YLG++ LYDRY + + IE+PQ Sbjct: 108 RGERAGRILPGLKEKYDLDDLNSYIKPERDLQFTYLGIKTLYDRYIIKDKENNPIELPQQ 167 Query: 320 FFMRVAMGLALKETEKE--------------------KRAVEFYNLLSSFHFMCSTPTLF 359 FM VAM LA ET A +FY+++S F M +TPTL Sbjct: 168 LFMGVAMFLAQNETNPNSIPNEDKDKVDLNNPKSIRGYWAKKFYDVISKFEVMVATPTLS 227 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N+ T QLSSC++ ++ D++ GIF +E A+L+K+ GG+G D++ +R LG+ I Sbjct: 228 NARTTRHQLSSCYVGSMNDNIEGIFDDYKEMALLSKFGGGIGWDFSKIRALGSFIDNHKN 287 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + GVIP+LK+ ND A+AV+Q G RKGA+ Y+E WH+D+ +FLDL+KN+G++RRR HD+ Sbjct: 288 AAGGVIPWLKITNDIAIAVDQLGTRKGAIAVYIEPWHMDILDFLDLKKNSGEERRRAHDL 347 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 A WIPDLFMKRV ++ WTLF P E DL +LYG+EFE Y YE + D + RK Sbjct: 348 FPALWIPDLFMKRVEEDGLWTLFDPYETGDLTNLYGEEFEKKYIEYENREDITK----RK 403 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 + A LW+K+L +ETG+P++ FKD N R+ H G++ SSNLCTEI N+ V Sbjct: 404 VKAKELWKKILLEYYETGNPFLCFKDNANKRNQNDHSGIIRSSNLCTEIFQNTEPNHYKV 463 Query: 600 CN-------------------------------LGSINLLAHFANNQFD---YDKLASTI 625 + S++ + + +D + Sbjct: 464 KVTFEDGSEEYFNEDDDVKVSLGDVEVVVKGKKITSLHYINGKKVYIVEKVPFDGKTAVC 523 Query: 626 RTA--------------------VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 A +R+LDNVID+N + + K K +N +RAIGLG MG Sbjct: 524 NLASVNLSKVNTPEKIAEVVPIAIRMLDNVIDLNYYPVRKTKDTNLKNRAIGLGAMGEAQ 583 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L I + S E +++ DE E IS+ AI S ELA+E+GAY F+GS W +G+ PID+ Sbjct: 584 LLAERQIFWGSDEHLKLIDEIFEGISYWAIKTSAELAEEKGAYPEFEGSRWSKGILPIDT 643 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 A+ E + + W L+++VK GMRN MAIAPT++I+ + G +Q+I+P Sbjct: 644 ANEEAKKLVERDLFSAMQYDWKSLREKVKK-GMRNGYLMAIAPTSSISILTGTTQTIEPV 702 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 Y+ + + N+SG VV + + D + Sbjct: 703 YKRKWYEENLSGLIPVV-------------------------------VPNLSADTYMFY 731 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYL 903 A+E+D L+++A+ RQKWIDQ QSLN+++ + SG+ L+ IY W +GLK+ YYL Sbjct: 732 TPAYELDQRILVKAAAIRQKWIDQGQSLNIFITTDKASGRYLNEIYMLGWKLGLKSFYYL 791 Query: 904 RSRS 907 RS+S Sbjct: 792 RSQS 795 >gi|237752016|ref|ZP_04582496.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter winghamensis ATCC BAA-430] gi|229376583|gb|EEO26674.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter winghamensis ATCC BAA-430] Length = 790 Score = 529 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 296/866 (34%), Positives = 435/866 (50%), Gaps = 131/866 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L ++ +G + + +++ +++ GL+ VS + + D ++ +++ LI Sbjct: 1 MLTVVKRNGRIEPLDVTKIQKHTKDSVLGLEGVSQSELEVDAKLQFRDKITTQEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L V Y + + Sbjct: 61 KTAVDKIDIDCPNWTYVAARLFLYDLYHRVNGFNG--------------YKSLAEYFEKG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 + R++ F+L L + ERD F YLG++ LYDRY L G+ IE+PQ F Sbjct: 107 ERENRIIGGLKEKFNLDRLNKKIVPERDLQFNYLGVKTLYDRYLLKDKQGNPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + A +FY+LLS F M +TPTL N+ T QLSSC++ + PD + Sbjct: 167 MGIAMFLAQNEKDPNYWAEQFYDLLSKFEVMVATPTLSNARTPRHQLSSCYVGSTPDSIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+KY GG+G D++ +RGLG+ I G + GVIPFLK+ ND A+AV+Q Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH D+ +F+D++KN+G++RRRTHD+ A WIPDLFMKRV ++ W+L Sbjct: 287 GTRKGAISVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVGEDGLWSL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F +DL +LYG+ FE Y YE+ E V + A LW+K+LT FE G P++ Sbjct: 347 FDSLACADLTNLYGEAFEARYIQYEQD----ESIVRETVKAKDLWKKILTSYFEIGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ T + Sbjct: 403 CFKDNANRANPNAHAGIIRSSNLCTEIFQNTEPNTTFIRVEFEDGTIEDYPEYQPIITDY 462 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + A+R Sbjct: 463 GIEKLSNKITSTDSIGGKKVFIAQRESKDGKTAVCNLASINLSKIHTKEDIERVVPIAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N +RAIGLG+MG L I + S ++ D ME + Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDNRAIGLGVMGEAQMLAESRIEWGSDAHLQKIDAIMESV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AI +S ELAQE+G YS F GS W +G+FPID A+ + W+ L+ Sbjct: 583 SYNAIKSSCELAQEKGVYSDFVGSEWSKGIFPIDKANNEAKALVDRGGLFAYDYDWNALR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EEVKTKGMRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 D W+ + +A+EID L+++A+ RQKWIDQ Sbjct: 699 -SLDNWN--------------------------YYTSAYEIDQRLLVKAAAVRQKWIDQG 731 Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QS N+++ + SGK L+ IY AW +GLK+TYYLRS+S E ST Sbjct: 732 QSTNIFMALNLASGKYLNEIYTLAWKLGLKSTYYLRSQSI-EAEISTDTMDRSI------ 784 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 785 --------------------ECEGCQ 790 >gi|118474247|ref|YP_892927.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter fetus subsp. fetus 82-40] gi|118413473|gb|ABK81893.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter fetus subsp. fetus 82-40] Length = 791 Score = 529 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 300/869 (34%), Positives = 437/869 (50%), Gaps = 137/869 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA +GL +VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKYTSEAVAGLDNVSLSELEVDAKIQFRDNITTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L + Y E+G Sbjct: 61 TAVDKIDIDRPNWTFVAARLFLYDLYHKTTGFSG---------------YNSLKEYFEKG 105 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321 K + + + +DL L +K ERD F YLG++ LYDRY + IE+PQ F Sbjct: 106 EKNGRILLGLKEKYDLEDLNAYIKPERDLQFTYLGIKTLYDRYLIKDRNAKPIELPQHMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNELDSQSWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKR++QN WTL Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRLSQNERWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + DL DLYG EFE Y YE+ + + A LW+K+LT FETG P++ Sbjct: 346 FDPADTPDLCDLYGDEFEKRYIEYEKDPHIAKS----SMLAKELWKKILTNYFETGMPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------------- 605 FKD N +P H G++ SSNLCTEI N+ + V + GS Sbjct: 402 CFKDNANRANPNAHKGIIRSSNLCTEIFQNTEPNYYQTKVVFDDGSFKLFDESEDITVDG 461 Query: 606 -----------------------------------NLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + +A + A+R Sbjct: 462 GYTKKAKKITALDRLDNKDIFIVEKGIKEGKTAVCNLASINLSKINSKEDIARVVPIAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N R+IGLG+MG L I + S E +E DE ME I Sbjct: 522 MLDNVIDLNFYPHAKVKHTNLASRSIGLGVMGEAQMLAEKGIIWGSYEHLEFIDEVMENI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE---VRDELAMNRTSRLPWD 747 S++AI AS LA E+GAY F+GS W +G+FPID A+ R L + W+ Sbjct: 582 SYNAIYASSNLAVEKGAYPDFEGSNWSKGIFPIDMANKNAKALINRGGLFDQNS--CDWE 639 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L+ +VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG V L Sbjct: 640 KLRAKVKEGGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPSVVPNL- 698 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + A+E+D +I++ + RQKWI Sbjct: 699 ---------NTETW---------------------QFYTPAYELDQKLIIKAGAVRQKWI 728 Query: 868 DQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 DQ QSLN+++ + SG+ L IY AW +G+K+TYYLRS S L+ Sbjct: 729 DQGQSLNIFMSLDKASGRYLSEIYTLAWELGVKSTYYLRSES----------PDSSHLDN 778 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 P+ ECE CQ Sbjct: 779 KPMDRSV----------------ECEGCQ 791 >gi|194377918|dbj|BAG63322.1| unnamed protein product [Homo sapiens] Length = 570 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 221/581 (38%), Positives = 342/581 (58%), Gaps = 19/581 (3%) Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA Sbjct: 3 DDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTAR 62 Query: 437 AVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QG KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV Sbjct: 63 YVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVET 122 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N W+L P+E L +++G+EFE Y +YE+Q +V + + A LW ++ E Sbjct: 123 NQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAIIGSQTE 177 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANN 614 TG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + Sbjct: 178 TGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEH 237 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ Sbjct: 238 TYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPF 297 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 298 ESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP---- 353 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + Sbjct: 354 ------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRV 407 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T +EI Sbjct: 408 LSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQK 467 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEK 913 +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + Sbjct: 468 TVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQ 527 Query: 914 STLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 TL V + ++ + S + EC +C Sbjct: 528 FTLNKEKLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 568 >gi|223038384|ref|ZP_03608678.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter rectus RM3267] gi|222880241|gb|EEF15328.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter rectus RM3267] Length = 791 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 299/870 (34%), Positives = 437/870 (50%), Gaps = 139/870 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA +GL +VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L +V + Y+++G Sbjct: 61 TAVEKIDIDRPNWTFVAARLFLYDLYHKVTGFSG---------------YNHLRDYLQKG 105 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 KA + + + +DL L + ++ ERD F YLG++ LYDRY + G+ IE+PQ F Sbjct: 106 EKAGRIIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLVSKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +NA W+L Sbjct: 286 GTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P EV+DL DLYG EFE Y YE E + A LW+K+LT FE+G P++ Sbjct: 346 FDPAEVADLCDLYGDEFEARYIAYE----NDEKIQKNVVMAKELWKKILTSYFESGMPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ + Sbjct: 402 CFKDNANKTNPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSERLFDEEEDVRVDS 461 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + AVR Sbjct: 462 GIVKKAKKLSALDSIGGEQIFIVEKESLEGKTAVCNLASINLSKINKKEDIERVVPIAVR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +K K +N R+IGLG+MG L + + S E + + D ME I Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPW 746 SF+AI AS LA E+G Y F+GS W +GV PID+ A+ R L W Sbjct: 582 SFNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDENA--CDW 639 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG V Sbjct: 640 SKLREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV---- 695 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + + + + A+E+D L+ + + RQKW Sbjct: 696 ---------------------------VPNLSPETWQFYTPAYELDQRVLVRAGAIRQKW 728 Query: 867 IDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 IDQ QSLN+++ + SG L IY AW +GLK+TYYLRS S KLN Sbjct: 729 IDQGQSLNIFMSLDKASGGYLSEIYMLAWELGLKSTYYLRSES----------PDSEKLN 778 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V ECE CQ Sbjct: 779 NVADRSI-----------------ECEGCQ 791 >gi|254457625|ref|ZP_05071053.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacterales bacterium GD 1] gi|207086417|gb|EDZ63701.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacterales bacterium GD 1] Length = 788 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 287/819 (35%), Positives = 433/819 (52%), Gaps = 104/819 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G + +++ A L +VS + + + DG++ ++++ LI Sbjct: 1 MITIIKRNGRTEPLDITKIQKYTSAAVKDLSNVSQSELEVDAQIHFRDGITSAEIQKTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V +R + L +V Y + + Sbjct: 61 KTAVDKIDIDAPNWTFVASRLFMFNLYHQVNGFTG--------------YGSLKKYFEKG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 + RLL +DL L +K ERD F YLG++ LYDRY + + IE+PQ F Sbjct: 107 EKEGRLLQGLADMYDLDRLEKHIKPERDMLFNYLGVKTLYDRYLIKDRANNPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA +E EK + A++FY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAIAMFLAQREEEKHEWAIKFYDMVSQFQVMLATPTLSNARTTRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + E AML+K+ GG+G DWT +R +G++I G + G +PFLK+ ND A+AV+Q Sbjct: 227 GIFDSYAEMAMLSKFGGGIGWDWTGIRSMGSYIDGHKNAAGGTVPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WHID+ +FLDL+KN+G++RRR HD+ A W+ DLFM+RV ++A WTL Sbjct: 287 GTRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPAMWLNDLFMQRVQEDAIWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + +L LYG+EF Y+ E E V K+ A LW+K+LT FETG P++ Sbjct: 347 FDPYDTKELATLYGEEFNKRYKELEED----ESIVKEKVKAKNLWKKILTSYFETGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----CNLGSI------------ 605 FKD N +P HVGV+ SSNLCTEI N++ + N SI Sbjct: 403 CFKDNANRANPNNHVGVIRSSNLCTEIFQNTNPNHYKIKFIFENGESISYEEDEIVKVDS 462 Query: 606 -----------------------------------NLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + AVR Sbjct: 463 GMEKPAKKVTALDSLGGLPIYVVEKEKINGDTAVCNLASVNLSRVNTKEDIDRIVPIAVR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID+N + IEK K++N R+IGLG+MG L I + S E + DE ME + Sbjct: 523 CLDNVIDLNFYPIEKVKRTNMKSRSIGLGVMGEAEMLAEQSITWGSQEHFDKIDEIMEAV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 SF+ ISAS +LA E+G Y F+GS W +GV P+D + S WD+L+ Sbjct: 583 SFNTISASSDLALEKGIYPDFEGSQWSKGVMPMDHANAEVRNLVDRGGLFASTYEWDDLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +VK GMRN MAIAPT++I+ + G +Q+I+P ++ + + N+SG VV Sbjct: 643 AKVKKQGMRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWFEENLSGLIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + A+E++ LI++A+ RQKW+DQ Sbjct: 695 -----------------------VPNLSPETWAYYTPAYELNQTLLIKAAAIRQKWLDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QSLN+++ + SG+ L+ IY AW +GLK+TYYLRS+S Sbjct: 732 QSLNIFITLDKASGRYLNEIYMLAWKLGLKSTYYLRSQS 770 >gi|157736291|ref|YP_001488974.1| ribonucleotide-diphosphate reductase subunit alpha [Arcobacter butzleri RM4018] gi|157698145|gb|ABV66305.1| ribonucleoside-diphosphate reductase, alpha chain [Arcobacter butzleri RM4018] Length = 794 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 285/820 (34%), Positives = 428/820 (52%), Gaps = 101/820 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I +G + +++ + EA GL+ VS + + + DG+ D++ ALI Sbjct: 2 AIMIQKRNGRKELLDITKIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI 61 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L V + +A H YI+ Sbjct: 62 KTAVEKIDIDVPNWTFVAARLFLFDLYHRVGIATHGVKGEAYCH---------LKDYIKF 112 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320 G++A L S+ D +DL L + RD F YLG++ LYDRY + IE+PQ Sbjct: 113 GIEAGRLIPSIADGYDLDELNAYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQM 172 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E +K+ +A EFY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 173 FMAIAMFLAQNEKDKQSKAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF +E A+L+KY GG+G DW +R LG I + G +PFLK+ ND A+AV+Q Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQ 292 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH+D+ +F+DL+KN+G++RRR HD+ A WI DLFM+RV +++ WT Sbjct: 293 LGTRKGAIAVYLEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWT 352 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P EV DL + +G EF+ Y YE E ++ A LW+K+LT FE G P+ Sbjct: 353 LFDPYEVRDLSETFGDEFKAKYVAYE----NDETITKDRMKAKDLWKKILTSYFEVGSPF 408 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601 + +KD N +P HVG + SSNLCTEI N++ + Sbjct: 409 LCWKDTANRTNPNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVD 468 Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + TA+ Sbjct: 469 GGVTKKANKVSALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAI 528 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + + K K +N R+IGLG+MG L + + S E + D+ ME Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEA 588 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS++ I +S +LA E+G Y +F+GS W +G+ P D + + + WD L Sbjct: 589 ISYNTIKSSSDLASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDL-FDTSYDWDVL 647 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 648 REKVKKDGMRNGYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------- 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + R+ + + AFEID + +I++A+ RQKWIDQ Sbjct: 701 ------------------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQ 736 Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QS N+++ + SGK L IY AW +GLK+TYYLRS+S Sbjct: 737 GQSTNIFMSLDKASGKYLHEIYTLAWKLGLKSTYYLRSQS 776 >gi|295103294|emb|CBL00838.1| ribonucleoside-diphosphate reductase, alpha subunit [Faecalibacterium prausnitzii SL3/3] Length = 817 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 263/895 (29%), Positives = 416/895 (46%), Gaps = 126/895 (14%) Query: 50 IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109 + KAF +G+G R D + + +L + + + +E +QD+VE +LM+ Sbjct: 1 MKKAF---DGQGKEIGSREMD-------EILATVLNNLSVTVPLTVERVQDEVERTLMER 50 Query: 110 GHHKITREYVLYREERS---DVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIV 166 GH+++ + Y+LYRE+RS VR + + D + L+ + D T ++ L+M Sbjct: 51 GHYEVAKAYILYREKRSALRRVRHTIARTVGDDSLDEVLRRIQMDFTEEVYSLAALQMKF 110 Query: 167 EEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLL 225 E C G++E + AL ++ L E P + + AR L Sbjct: 111 ESFCRL-------------------GMTEDERAEALTKAAVELTTAEAPKWEFIAARLLN 151 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 R + Q+ + LY + ++G+ + ++ + L Sbjct: 152 HSFR-------CRNAQEWEGRGVCDLYGK-LRYLTDKGLYGDYILAHYTHEEIAMAEDFL 203 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE-TEKEKRAVEFY 343 ERD F Y GL +L RY + +E PQ F+ +A+ LA+ E +++ FY Sbjct: 204 CPERDELFTYSGLDLLLKRYVIQSRSRVPLETPQEMFLGIALHLAMNEGSDRMGWVKRFY 263 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 ++LS +TPT+ N+ + QLSSCF+ TVPD L GI+ +L A ++K+ GG+G Sbjct: 264 DMLSRMEVTMATPTMSNARKPYHQLSSCFVDTVPDSLDGIYRSLDNFAKVSKFGGGMGMY 323 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + VR G+ I G G + GVI ++++ NDTAVAV+Q G R+GAV YL+ WH D+ EFL Sbjct: 324 FGKVRAAGSTIRGFQGAAGGVIRWIRLVNDTAVAVDQLGMRQGAVAVYLDAWHRDLPEFL 383 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-----SDLHDLYGK 516 LR N GDDR + HD+ A PDLF + +N W L P E+ L D +G Sbjct: 384 QLRTNNGDDRMKAHDVFPAVCYPDLFWRLAEENIDAPWHLMCPHEILTVKGYALEDYWGT 443 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E+E Y + + R ++ + R +L ETG P+ +D N +P H Sbjct: 444 EWEKRYLDCVNDPRIEK----RSVTVKDIVRLVLRSAVETGTPFAFNRDSVNHMNPNGHT 499 Query: 577 GVVHSSNLCTEITLNSSSEETA-----------------------VCNLGSINLLAHFAN 613 G+++ SNLCTEI N + E VCNL S++L Sbjct: 500 GMIYCSNLCTEIAQNMAPIEHISTEVHTENGDTIVVTATRPGEFVVCNLASLSLGNLPVE 559 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 D + T+ TA+R LDNVID+N + +E A+ +N +R+IGLG+ G+ L I Sbjct: 560 ---DEAYMERTVETAIRALDNVIDLNFYPLEYARLTNQKYRSIGLGVSGYHHMLAKRGIH 616 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S E + D E I++ A+ A LA+E+G Y+ F+GS W G Sbjct: 617 WESDEHLAFTDAVFELINYAAVKADTALAREKGRYALFEGSDWQTG-------------- 662 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + W L K V GMRN+ +A+APT++ + + G S IDP + +++ Sbjct: 663 AYFEKRGYTSEKWRALAKTVAVQGMRNAYLLAVAPTSSTSILSGTSAGIDPIMKKFFLEE 722 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 V + D + A ID Sbjct: 723 KKGSMLPRVAP-------------------------------ELSMDTWWYYKAAHLIDQ 751 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 W + +A RQ+ IDQAQS+NLY+ ++ S +++ +Y +AW G+KT YY+RS++ Sbjct: 752 SWSVRAAGLRQRHIDQAQSMNLYITNDYSMRQVLRLYLEAWRAGVKTIYYVRSKA 806 >gi|242310744|ref|ZP_04809899.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pullorum MIT 98-5489] gi|239523142|gb|EEQ63008.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pullorum MIT 98-5489] Length = 788 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 299/866 (34%), Positives = 440/866 (50%), Gaps = 133/866 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L ++ DG + + +++ ++ GL+ VS + + + D ++ +++ LI Sbjct: 1 MLTVIKRDGRIEPLDVTKIQKYTHDSVVGLEGVSQSELEVDAKLHFRDRITTQEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L +V K K + Sbjct: 61 KTAVDKIDIDCPNWTFVAARLFLYDLYHKVNGFNGYKTLKEYLEIGEK------------ 108 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 + R++ F+L L + +RD F YLG++ LYDRY L G+ IE+PQ F Sbjct: 109 --ENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGNPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + A +FY+LLS F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MGIAMFLAQNEDDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+KY GG+G D++ +RGLG+ I G + GV+PFLK+ ND A+AV+Q Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVVPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH D+ +F+D++KN+G++RRRTHD+ A WIPDLFMKRV ++ W L Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRTHDLFPALWIPDLFMKRVAEDGLWNL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F +DL +LYG+ FE Y+ YE E I A LW+++LT FE G P++ Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYEAD----ESIPKETIKAKDLWKRILTNYFEVGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ + + Sbjct: 403 CFKDNANRANPNYHSGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIQDYEEYQEVLTDC 462 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + A+R Sbjct: 463 GILKSSNKITSTDSINGKKVFISQRESVDGKTAVCNLASINLSKINTKEDIERVVPIAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S + +E DE ME I Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIEWGSQKHLEKIDEIMEMI 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AI+AS +LAQE+G Y+ F GSLW QG+FPID A+ + WD L+ Sbjct: 583 SYNAINASCKLAQEKGVYNDFAGSLWSQGIFPIDKANNEAKALVDRGGLFGFIYDWDSLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + VKT G+RN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + W+ + +A+EID +I++A+ RQKWIDQ Sbjct: 699 -SLENWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731 Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QS N++ LD+ SGK L+ IY AW +GLK+TYYLRS+S E ST+ Sbjct: 732 QSTNIFISLDKASGKYLNDIYSLAWRLGLKSTYYLRSQS-VEAENSTMDRSI-------- 782 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 783 --------------------ECEGCQ 788 >gi|315635422|ref|ZP_07890688.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter butzleri JV22] gi|315480180|gb|EFU70847.1| ribonucleotide-diphosphate reductase alpha subunit [Arcobacter butzleri JV22] Length = 794 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 285/820 (34%), Positives = 429/820 (52%), Gaps = 101/820 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I +G + +++ + EA GL+ VS + + + DG+ D++ ALI Sbjct: 2 AIMIQKRNGRKELLDITKIQKMSMEATKGLEGVSQSELELDAHIKFIDGMHSKDIQDALI 61 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L V + +A H YI+ Sbjct: 62 KTAVEKIDIDVPNWTFVAARLFLFDLYHRVGIATHGVKGEAYCH---------LKDYIKF 112 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320 G++A L S+ D +DL L + + RD F YLG++ LYDRY + IE+PQ Sbjct: 113 GIEAGRLIPSIADGYDLDELNSYIDPSRDLLFNYLGIKTLYDRYLIKNRKAEPIELPQQM 172 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E +K+ +A EFY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 173 FMAIAMFLAQNEKDKQSKAKEFYDVISKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF +E A+L+KY GG+G DW +R LG I + G +PFLK+ ND A+AV+Q Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRSLGGVIDDHKSAAGGTVPFLKITNDLAIAVDQ 292 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH+D+ +F+DL+KN+G++RRR HD+ A WI DLFM+RV +++ WT Sbjct: 293 LGTRKGAIAVYLEPWHMDIVDFVDLKKNSGEERRRAHDLFPALWISDLFMERVMEDSYWT 352 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P EV DL + +G EF+ Y YE E ++ A LW+K+LT FE G P+ Sbjct: 353 LFDPYEVRDLSETFGDEFKAKYIAYE----NDETITKDRMKAKDLWKKILTSYFEVGSPF 408 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601 + +KD N +P HVG + SSNLCTEI N++ + Sbjct: 409 LCWKDTANRTNPNSHVGHIRSSNLCTEIFQNTNPNHYKIKLEFEDGTVSTYEESDLVVVD 468 Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + TA+ Sbjct: 469 GGVTKKANKVSALDSVNGKRVFIVEKEKIDGDTAVCNLASINLSKINTKEDIERVVPTAI 528 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + + K K +N R+IGLG+MG L + + S E + D+ ME Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAEMLAQHQLAWGSSEHFKKIDQIMEA 588 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS++ I +S +LA E+G Y +F+GS W +G+ P D + + + WD L Sbjct: 589 ISYNTIKSSSDLASEKGVYPTFEGSKWSKGIMPHDLAPQAVNALVDKDL-FDTSYDWDVL 647 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 648 REKVKKDGMRNGYLMAIAPTSSISILVGTTQAIEPVYKRKWFEENLSGLIPVV------- 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + R+ + + AFEID + +I++A+ RQKWIDQ Sbjct: 701 ------------------------VPRLSPETWAYYTPAFEIDQLQVIKAAAIRQKWIDQ 736 Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QS N+++ + SGK L IY AW +GLK+TYYLRS+S Sbjct: 737 GQSTNIFMSLDKASGKYLHEIYTLAWKLGLKSTYYLRSQS 776 >gi|313887772|ref|ZP_07821454.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846381|gb|EFR33760.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 842 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 275/913 (30%), Positives = 443/913 (48%), Gaps = 116/913 (12%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 ++++KR+ FD KI AI KAF +V V +I LL++ Sbjct: 1 MKILKRDKREVDFDHLKIKNAIEKAFDSVGK------SYVDSVINAYALDIKETLLKNYD 54 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E+IQD VE L+ ++ + Y+LYR S+ R + LKI+ Sbjct: 55 PKNPPTVEEIQDLVELKLIDEKEIEVVKAYILYRNRHSEERQILDKFANYITDDKVLKIL 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 +++ K+ L++ + + + S+ + +I ++ Sbjct: 115 K--FVRKTYDPKK---------YELEN-----LYKKFESFVKKDQSQDAYLSEIIKAASE 158 Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 L +K+ P + + A FL L +++ + + + ++ L E+G+ + Sbjct: 159 LTDKDAPRWEFIAALFLNYDLEKKIKANLEEFKINNFYEKIVFL--------TEKGLYGK 210 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAM 326 + E+ D++ L + + R+ Y GL +L RY + +G +E Q FM +AM Sbjct: 211 YILENYSKEDILELEDYIDNSRNRLLNYSGLDLLIKRYVIRSHDGRFVESIQEMFMGIAM 270 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 LA+ E + A +FY++ SS +TPT+ N+ + QLSSCF+ TVPD L GI+ + Sbjct: 271 HLAIPEKNRIYWAKKFYDIYSSLKVTVATPTMSNARKPYNQLSSCFIDTVPDTLKGIYRS 330 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+G Sbjct: 331 IDNFAQISKHGGGMGLYFGKVRATGSDIRGFKGVAGGVIRWIKLANDTAVAVDQLGVRQG 390 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSP 504 +V YL+ WH D+ EFL LR N GDDR + HD+ A P+LF + + NA W +F P Sbjct: 391 SVACYLDAWHKDIPEFLQLRTNNGDDRMKAHDIFPAISYPNLFFELAEKDINATWYMFDP 450 Query: 505 DEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 EV L D YGKE+E Y E R++S L R ++ L ETG P Sbjct: 451 HEVLAKKGYSLEDFYGKEWEEKYRECIED----ESISRREMSVKDLVRLIIKSLTETGTP 506 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------------- 596 + ++D N +P +HVG+++SSNLCTEI N S+ E Sbjct: 507 FAFYRDNVNEMNPNKHVGMIYSSNLCTEIMQNMSAIETLDTTIETEDGDEVIVTKTKPGD 566 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 VCNL S+ L + D +L + T VR LDNVID+N + I AK +N +R+I Sbjct: 567 FVVCNLASLVLGNI---DLEDDKELKDIVATTVRALDNVIDLNYYPIPYAKVTNRKYRSI 623 Query: 657 GLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 GLG G+ AL + ++ E ++ AD+ E I+FHA++AS+E+A+E+G+Y F+GS Sbjct: 624 GLGTSGYHHALVKAGMAFSDIEDHLKWADDLYERINFHAVTASMEIAKEKGSYDFFEGSD 683 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W+ G + + W++L++ VK G+RN MAIAPT + + I Sbjct: 684 WENG--------------NYFDLRDYKDAKWNKLREEVKANGLRNGYIMAIAPTGSTSII 729 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 S +DP +++ V +L + W Sbjct: 730 AATSAGVDPIMNRYFLEEKKGSILPRVAP----DLTPQSFW------------------- 766 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ A E+D ++IE+A+ RQ+ IDQAQS+N Y+ + + +K+ +Y +A Sbjct: 767 --------LYENAHELDQNFVIEAAAIRQRHIDQAQSINFYITTDFTMRKILNLYIKAAK 818 Query: 895 MGLKTTYYLRSRS 907 LK+ YY+RS+S Sbjct: 819 EKLKSVYYVRSKS 831 >gi|255323617|ref|ZP_05364747.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter showae RM3277] gi|255299331|gb|EET78618.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter showae RM3277] Length = 791 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 298/870 (34%), Positives = 437/870 (50%), Gaps = 139/870 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA +GL +VS + + D ++ +++ LI Sbjct: 1 MKVLKRNGRTEELDVSKIKKYTSEAVAGLANVSLSELEVDAKIQFRDMITTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L +V + Y+++G Sbjct: 61 TAVEKIDIDRPNWTFVAARLFLYDLYHKVTGFSG---------------YNHLRDYLQKG 105 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 KA + + + +DL L + ++ ERD F YLG++ LYDRY + G+ IE+PQ F Sbjct: 106 EKAGRVIPGLKEKYDLDDLNDYIRPERDLQFAYLGIKTLYDRYLIKDRSGAPIELPQHMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNELDCQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+K+ GG+G DW VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWCKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +NA W+L Sbjct: 286 GTRKGAIAVYVEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENARWSL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P EV+DL DLYG EFE Y YE E + A LW+K+LT FE+G P++ Sbjct: 346 FDPAEVADLCDLYGDEFEARYIAYE----NDEKIQKNVVMAKELWKKILTSYFESGMPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ + Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTQPNYYKIKITFEGGSEQLFDEEEDVTVDS 461 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + AVR Sbjct: 462 GITKKAKKLSALDSIDGKQIFIVEKESVEGKTAVCNLASINLSKINKKEDIERVVPIAVR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +K K +N R+IGLG+MG L + + S E + + D ME I Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAERGVKWGSYEHLALIDSVMENI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE----VRDELAMNRTSRLPW 746 S++AI AS LA E+G Y F+GS W +GV PID+ A+ R L W Sbjct: 582 SYNAIYASSNLAVEKGVYPLFEGSKWSRGVMPIDTANANAKALLNDRGGLFDENA--CDW 639 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG V Sbjct: 640 SKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV---- 695 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + + + + A+E+D L+ + + RQKW Sbjct: 696 ---------------------------VPNLSPETWQFYTPAYELDQRVLVRAGAIRQKW 728 Query: 867 IDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 IDQ QSLN+++ + SG L IY AW +GLK+TYYLRS S KLN Sbjct: 729 IDQGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES----------PDSEKLN 778 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V ECE CQ Sbjct: 779 NVADRSI-----------------ECEGCQ 791 >gi|154149160|ref|YP_001407242.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter hominis ATCC BAA-381] gi|153805169|gb|ABS52176.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter hominis ATCC BAA-381] Length = 793 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 297/819 (36%), Positives = 433/819 (52%), Gaps = 105/819 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + ++ E+ GL +VS + + D +S +++ LI Sbjct: 1 MKVVKRNGRTEELDISKIRKYTRESIEGLDNVSLSELELDAKIQFRDMISTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L +V T Y + Sbjct: 61 TAVEKIDVDQPNWTFVAARLFLYDLYHKVTTFNG--------------YNSLREYFERGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322 + ++L +DL L + +K +RD F YLG++ LYDRY L N IE+PQ FM Sbjct: 107 KEGKILLGLKEKYDLDDLQDYIKPQRDLQFTYLGIKTLYDRYLLKDNEARPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E + + A +FY+LLS F MC+TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNELDCQTWAKKFYDLLSKFEVMCATPTLSNARTPRHQLSSCYVGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + +E A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSFKEMALLSKFGGGIGWDWSKVRAIGGSIDGNKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+ETWH+D+ +FLDLRKN+G++RRR H++ A WI DLFMKR+ +NA WTLF Sbjct: 287 TRKGAIATYIETWHMDIGDFLDLRKNSGEERRRAHELFPALWINDLFMKRLEKNANWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P EVSDL D YG+EFE Y YE + + I A LW+K+LT FE+G P++ Sbjct: 347 DPAEVSDLCDCYGEEFEKKYIEYENNSKISKSL----IPAKELWKKILTSCFESGMPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---AVCNLGSI-------------- 605 FKD N +P H G++ SSNLCTEI N+ N GSI Sbjct: 403 FKDNANKANPNAHEGIIRSSNLCTEIFQNTRPNHYKIKVTFNDGSIKLFEEEDDITLDNG 462 Query: 606 ----------------------------------NLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + A+R+ Sbjct: 463 LIKKGKKITSLDALDGKDVFCVEKAYDEGLTAVCNLASINLSKINTKEDIQRVMPIAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVI++N + K K +N RAIGLG+MG L IP+ S E E D+ ME IS Sbjct: 523 LDNVINLNFYPHIKVKHTNLKTRAIGLGVMGEAQMLATKGIPWGSYEHFEFIDKIMENIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL-AMNRTSRLPWDELK 750 ++AI AS LA E+G Y F+GS W +G+ PID A+ + + W L+ Sbjct: 583 YNAILASSNLAIEKGKYPDFEGSNWSKGIMPIDLANEEAKALVKRGGLFDEDGCDWKYLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D +++ A+E+D LI++A+ RQKWIDQ Sbjct: 695 -----------------------VPNLSPDTWQLYTPAYELDQRLLIKAAAVRQKWIDQG 731 Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QSLN++ L++ S + L+ IY AW +GLK+TYYLRS+S Sbjct: 732 QSLNIFISLEKSSARILNDIYTLAWKLGLKSTYYLRSQS 770 >gi|157165034|ref|YP_001467815.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter concisus 13826] gi|112801827|gb|EAT99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter concisus 13826] Length = 791 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 298/868 (34%), Positives = 438/868 (50%), Gaps = 135/868 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ EA GL +VS + + D ++ +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKYTNEAVLGLNNVSLSELEVDAKIQFRDMITTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L +V + Y+ +G Sbjct: 61 TAVDKIDIDRPNWTFVAARLFLFDLYHKVTGFNG---------------YNHLKDYLAKG 105 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 K + + + +DL L +K ERD F YLG++ LYDRY + G IE+PQ F Sbjct: 106 EKVGRIIPGLKEKYDLEDLNAYIKPERDLQFAYLGIKTLYDRYLIKDKSGMPIELPQHMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 MAIAMFLAQNELDSQGWAKKFYDLISKFEVMLATPTLSNARTTRHQLSSCYVGSTPDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+K+ GG+G DW+ VR +G I G + G+IPFLKV ND AVAV+Q Sbjct: 226 GIFDSYKEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKVTNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+DV +FLDLRKN+G++RRR H++ A WI DLFMKRV +N W+L Sbjct: 286 GTRKGAIAVYIEPWHMDVSDFLDLRKNSGEERRRAHELFPALWINDLFMKRVKENGRWSL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P +VSDL DLYG+EFE Y YE E I A LW+K+LT FETG P++ Sbjct: 346 FDPAQVSDLCDLYGEEFEKRYLEYE----NDESIQKNTILAKELWKKILTSYFETGMPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 CFKDNANKANPNDHDGIIRSSNLCTEIFQNTAPNYYKIKITYEDGGEELFDEEEDITVDS 461 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + A+R Sbjct: 462 GITKKAKKLSALDSLKGKQIFIVEKESIEGKTAVCNLASINLSKINSKEDIERVVPIAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + +K K +N R+IGLG+MG L ++ + S E + + D ME I Sbjct: 522 MLDNVIDLNFYPHKKVKHTNLASRSIGLGVMGEAQMLAEKNVKWGSYEHLALIDSIMENI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--DELAMNRTSRLPWDE 748 S++AI S LA E+G Y F+GS W +G+ PID+ A+ D+ + + WD+ Sbjct: 582 SYNAIYTSSNLAVEKGIYPKFEGSKWSKGIMPIDTANENAKALLNDKGGLFDENVCDWDK 641 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG V Sbjct: 642 LREKVKRDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEHNLSGMIPNV------ 695 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + D + + A+E+D LI++ + RQKWID Sbjct: 696 -------------------------VPNLSPDTWQFYTPAYELDQRILIKAGAIRQKWID 730 Query: 869 QAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 Q QSLN+++ + SG L IY AW +GLK+TYYLRS S KLN V Sbjct: 731 QGQSLNIFMSLDKASGGYLSEIYTLAWELGLKSTYYLRSES----------PDSEKLNDV 780 Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 781 ADRSI-----------------ECEGCQ 791 >gi|225850412|ref|YP_002730646.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Persephonella marina EX-H1] gi|225646207|gb|ACO04393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Persephonella marina EX-H1] Length = 847 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 215/944 (22%), Positives = 391/944 (41%), Gaps = 141/944 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++ KR+G + F+P KI+ AI KA AV + + ++++ V L + K Sbjct: 4 KIRKRDGRIVPFNPEKITNAIWKAMQAV-------GEKDFSTAEKISKEVVRELERTLKP 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 I +E IQD VE L+++G ++ + Y+LYR++R+++R + + I + Sbjct: 57 GEIPDVEQIQDIVERKLIEAGLARVAKAYILYRQKRAEIRKEKQQILNKKEIDE---VDK 113 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 F+ L + ++R L Sbjct: 114 R------FDINALR---------------------------------------VLAARYL 128 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 + + + L +++ ++ ++ V+ Sbjct: 129 NKDRAGKIIESPKQLFQRVAVNTALPSLLYDERVYSK----------KELKKQPVE---- 174 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 DFD LK D+ L+ L Y N R+++P + ++ M Sbjct: 175 -----DFDPERYEGKLKI-GDYTLNRYHLEGLKRVYDRLNNERRMKIPFSKLLK--MIEK 226 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 + ++Y+++ FM +TP L N G +CF+ + D + I L+ Sbjct: 227 GDFESYGREIDQYYSIMVEKKFMPNTPVLVNFGNPLGMGMACFVLDMEDSIESIMETLKR 286 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A++ K GG G +++ +R G I T+GKS G I F+ + + + QGG R+GA Sbjct: 287 AALIFKAGGGCGYNFSKLRPKGDFISTTHGKSSGPIAFMTLYDKMTDVIKQGGVRRGANM 346 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 L + H D+EEF+ +K + + N + ++ + F +N + L +P + Sbjct: 347 GILNSDHPDIEEFIVAKKGNV----QLTNFNISVFLKEDFWDYYRENKPYPLINPRD--- 399 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 KV++ ++ L+ ++ +E+ P + F D N Sbjct: 400 ------------------------GKVWKYVNPRNLFDTIVYEGWESAEPGLLFDDNINR 435 Query: 570 RSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--------DYDK 620 +P G + ++N C E+ L + C+LGSINL A D+D Sbjct: 436 YNPFLETFGRIQATNPCGEVLLYPN----ESCDLGSINLWAFIKEYYDGNGRKVEVDWDG 491 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L T+R A R LDNV+DIN + ++ +K +R IGLG+MG L L IPY S + Sbjct: 492 LEKTVRIATRFLDNVLDINKYPFKEIEKETLKNRKIGLGIMGLADFLFELEIPYNSEDGR 551 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + MEF+++++ S++LA+ERG + S+ S + +G PI Sbjct: 552 RWMERVMEFVNYYSKEESIQLAKERGKFPSYNKSFYRKGKLPIR----------GFEEKE 601 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + L WD+L ++K G+RN+ IAPT +I+ I G + I+P + +Y K G F Sbjct: 602 SWNLDWDKLIDKIKKHGLRNAFTTVIAPTGSISMIAGTTSGIEPIFALVYEKKVTVGTFY 661 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 V+ +++ ++D+ +I D+ ++GSI +I+ IP+ KK+ TA +I +++ Sbjct: 662 YVDPVFEKTMEREGIFDDTLIKDVSKNEGSIQDIKYIPEKWKKVFVTAMDISAEDHVKAL 721 Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QKW D + S + + + + + Y A +G K R +S V + + Sbjct: 722 ASVQKWTDSSVSKTINFPEDATVEDMKRAYLLAHYLGCKGLTVYRYKSIKGVYVAGEEKK 781 Query: 920 DG---------KLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + K V + + I C VC+ Sbjct: 782 EEAKLTPIRDVKAKGVSIYKESVVHEEAEIERGTKGKDICPVCE 825 >gi|315586644|gb|ADU41025.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter pylori 35A] Length = 788 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 303/837 (36%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL DLYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTDLYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------------ 605 + FKD N +P H G++ SSNLCTEI N+ GSI Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGSIEFFEEKQLVTTD 461 Query: 606 ------------------------------------NLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + +A++ID LI++A+ RQKWIDQ Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|78778290|ref|YP_394605.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurimonas denitrificans DSM 1251] gi|78498830|gb|ABB45370.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Sulfurimonas denitrificans DSM 1251] Length = 788 Score = 524 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 285/827 (34%), Positives = 440/827 (53%), Gaps = 107/827 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G + +++ A GL +VS + + + DG++ +++ LI Sbjct: 1 MVTIIKRNGRTEKLDISKIQKYTSAAVEGLSNVSQSELEVDAQIHFRDGITSKEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V +R L L EV Y + Sbjct: 61 KTAVDKIDIDAPNWTFVASRLFLFNLYHEVNGFTG--------------YCSLENYFERG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321 + RLL+ ++L L +K ERD F YLG++ LYDRY + + IE+PQ F Sbjct: 107 EKEGRLLYGLKGMYNLEELEKHIKPERDMLFNYLGVKTLYDRYLIKDKNSNPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA +E +KE+ A++FYN++S+F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAIAMFLAQREEKKEEWAIKFYNMISTFEVMLATPTLSNARTTRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + E AML+K+ GG+G DWT VR +G++I G + G +PFLK+ ND AVAV+Q Sbjct: 227 GIFDSYAEMAMLSKFGGGIGWDWTNVRSMGSYIDGHKNAAGGTVPFLKITNDIAVAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WHID+ +FLDL+KN+G++RRR HD+ A W+ DLFM+RV ++A WTL Sbjct: 287 GTRKGAIAVYMEPWHIDINDFLDLKKNSGEERRRAHDLFPALWLNDLFMQRVEEDAIWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + +L L+G+EF Y E+ E + K+ A LW+K+LT FETG P++ Sbjct: 347 FDPYDCRELTTLHGEEFNKKYVELEK----NEAIIKEKLKAKNLWKKILTSYFETGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600 FKD N +P H G++ SSNLCTEI N++ + Sbjct: 403 CFKDNANRANPNSHSGIIRSSNLCTEIFQNTNPNHYKIKFIFQNGDSVSYEEEEIIEVDS 462 Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630 + NL + + + + + A+R Sbjct: 463 GLKKPAKKVTALDSIGGREIYVVEKEKINGDTAVCNLASVNLSRINTKEDIDRVVPIAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID+N + IEK K++N RAIGLG+MG L I + + E + DE ME + Sbjct: 523 ALDNVIDLNFYPIEKVKRTNMKTRAIGLGVMGEAQMLAQEGISWGTQEHFDKIDEIMESV 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 SF+AISAS ++A E+G+YS ++GS W +G+ P+D + + S W+EL+ Sbjct: 583 SFNAISASSDIALEKGSYSEYEGSKWSRGIMPMDHATAEVKNLVDRGGLFASAYEWEELR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +VK G+RN MAIAPT++I+ + G +Q+I+P ++ + + N+SG VV Sbjct: 643 TKVKNQGIRNGYLMAIAPTSSISILTGTTQAIEPVFKRKWYEENLSGLIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + A++++ LI++A+ RQKW+DQ Sbjct: 695 -----------------------VPELSPETWAYYTPAYDLNQTLLIKAAAIRQKWLDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS---ATSVE 912 QSLN+++ + SGK L+ IY AW +GLK+TYYLRS+S A+ VE Sbjct: 732 QSLNIFITLDKASGKYLNEIYMLAWKLGLKSTYYLRSQSPEMASDVE 778 >gi|308182832|ref|YP_003926959.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori PeCan4] gi|308065017|gb|ADO06909.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori PeCan4] Length = 788 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 301/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNYA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|261839497|gb|ACX99262.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori 52] Length = 788 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +R+IGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRSIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|317178962|dbj|BAJ56750.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F30] Length = 788 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 301/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------------ 605 + FKD N +P H G++ SSNLCTEI N+ G+I Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGAIEFFEEKQLVTTD 461 Query: 606 ------------------------------------NLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + +A++ID LI++A+ RQKWIDQ Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|208434597|ref|YP_002266263.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter pylori G27] gi|208432526|gb|ACI27397.1| ribonucleoside-diphosphatereductase 1 alpha subunit [Helicobacter pylori G27] Length = 788 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 301/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKYANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKVNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QSLN++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|15645304|ref|NP_207474.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori 26695] gi|2500207|sp|P55982|RIR1_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|2313806|gb|AAD14884.1| ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA) [Helicobacter pylori 26695] Length = 788 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QSLN++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSLNVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|109947415|ref|YP_664643.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter acinonychis str. Sheeba] gi|109714636|emb|CAJ99644.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter acinonychis str. Sheeba] Length = 788 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 304/837 (36%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNYPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAIWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG+EFE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLSELYGQEFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHTGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI SV LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 S+ + + +A++ID LI +A+ RQKWIDQ Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIRAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRVENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECHN 786 >gi|317180438|dbj|BAJ58224.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F32] Length = 788 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +GVFPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + +A++ID LI++A+ RQKWIDQ Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|297379875|gb|ADI34762.1| ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter pylori v225d] Length = 788 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 301/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQSL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|332673526|gb|AEE70343.1| ribonucleotide-diphosphate reductase alpha subunit [Helicobacter pylori 83] Length = 788 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEYQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + +A++ID LI++A+ RQKWIDQ Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|308063531|gb|ADO05418.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Sat464] Length = 788 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++ WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDTMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKYANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|188527475|ref|YP_001910162.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Shi470] gi|188143715|gb|ACD48132.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Shi470] Length = 788 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 301/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYRMQIEYTDGAIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDTLKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|217033693|ref|ZP_03439120.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10] gi|216943882|gb|EEC23319.1| hypothetical protein HP9810_5g35 [Helicobacter pylori 98-10] Length = 788 Score = 522 bits (1344), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYCMQIEYTDGTIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +GVFPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK+ GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + +A++ID LI+ A+ RQKWIDQ Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKVAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|307637366|gb|ADN79816.1| Ribonucleotide reductase of class Ia/alpha subunit [Helicobacter pylori 908] gi|325995959|gb|ADZ51364.1| Ribonucleotide reductase of class Ia,alpha subunit [Helicobacter pylori 2018] gi|325997553|gb|ADZ49761.1| Ribonucleotide diphosphate reductase alpha subunit [Helicobacter pylori 2017] Length = 788 Score = 522 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + ++ ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIRPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAELQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|308062005|gb|ADO03893.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Cuz20] Length = 788 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 301/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMRIEYTDGTIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|317177497|dbj|BAJ55286.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F16] Length = 788 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 299/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + +A++ID LI++A+ RQKWIDQ Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|88597697|ref|ZP_01100930.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|88190001|gb|EAQ93977.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 84-25] Length = 789 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 299/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLCEYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSCQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 D W + + A+E+D L+++A+ R KWIDQ Sbjct: 699 -SLDTW--------------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|308184468|ref|YP_003928601.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori SJM180] gi|308060388|gb|ADO02284.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori SJM180] Length = 788 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + + Sbjct: 462 NNITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 S+ + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|261838086|gb|ACX97852.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter pylori 51] Length = 788 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 301/837 (35%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGYKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NHITKCANKLTSTDILKGKQIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIIV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W+ + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --NLETWN--------------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|317014098|gb|ADU81534.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Gambia94/24] Length = 788 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAEEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|317010898|gb|ADU84645.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori SouthAfrica7] Length = 788 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 302/837 (36%), Positives = 438/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ L+DRY L N IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLHDRYLLKDANNYPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG+EFE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLSELYGQEFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTMDFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKQIYIATKIAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANKEALKLTEKGLFNYA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VKT GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKTFGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 S+ + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECHN 786 >gi|57505360|ref|ZP_00371289.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter upsaliensis RM3195] gi|57016496|gb|EAL53281.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter upsaliensis RM3195] Length = 789 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 295/868 (33%), Positives = 433/868 (49%), Gaps = 137/868 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G N +++ +A L+ VS + + DG++ +++ LI Sbjct: 1 MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFERGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + + IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKVEPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E + ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + D++ G Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G +I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGNIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI D+FMKR+ N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + DL +LYG+ FE YE YE+ + V I A LW+K+L FETG P++ Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEKD----DSIVKEIIDAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------------------- 602 FKD N +P H G++ SSNLCTEI N+ + + Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVIIDGG 462 Query: 603 -------------------------------GSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + LA + A+R+ Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E DE ME +S Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV---RDELAMNRTSRLPWDE 748 + AI AS LA E+G+Y FKGS W +G+FPID A+ R L S WD+ Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRGGLFAQ--SSCDWDQ 640 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 LRQKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL-- 698 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + + A+E+D L+++A+ R KWID Sbjct: 699 --------NLETW---------------------QYYTPAYELDQKILVKAAAVRGKWID 729 Query: 869 QAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 Q QSLN++L + SG L+ IY A +G+K+TYYLRS S K+N Sbjct: 730 QGQSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSES----------PDSEKVNVA 779 Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 780 DRSI------------------ECEGCQ 789 >gi|217032473|ref|ZP_03437965.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128] gi|298736377|ref|YP_003728903.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter pylori B8] gi|216945819|gb|EEC24440.1| hypothetical protein HPB128_156g3 [Helicobacter pylori B128] gi|298355567|emb|CBI66439.1| ribonucleoside-diphosphate reductase, alpha chain [Helicobacter pylori B8] Length = 788 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L N +K ERDF F YLG++ LYDRY L N IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNNQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK+ GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|108563087|ref|YP_627403.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori HPAG1] gi|107836860|gb|ABF84729.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter pylori HPAG1] Length = 788 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIDFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|153952334|ref|YP_001397294.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. doylei 269.97] gi|152939780|gb|ABS44521.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 789 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 300/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY L G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLLKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 D W + + A+E+D L+++A+ R KWIDQ Sbjct: 699 -SLDTW--------------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|283956202|ref|ZP_06373687.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792356|gb|EFC31140.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 789 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDISKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|254779335|ref|YP_003057440.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori B38] gi|254001246|emb|CAX29221.1| Ribonucleoside-diphosphate reductase, alpha subunit [Helicobacter pylori B38] Length = 788 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 439/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 TEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + + Sbjct: 462 NNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIII 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK+ GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 S+ + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 --------------------SV--------ETWNFYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QSLN++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSLNVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|315639325|ref|ZP_07894487.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter upsaliensis JV21] gi|315480651|gb|EFU71293.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter upsaliensis JV21] Length = 789 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 293/866 (33%), Positives = 431/866 (49%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G N +++ +A L+ VS + + DG++ +++ LI Sbjct: 1 MKVIKRNGRTEELNVSKIKKCTMDAVKNLEGVSLSELELDAKIQFRDGITTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFERGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + + IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKNSKAEPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E + ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + D++ G Sbjct: 167 AIAMFLAQNEFDPQEWAKKFYDLISKFEMMLATPTLSNARTTRHQLSSCYIGSTADNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI D+FMKR+ N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDINDFIDLRKNSGEERRRAHELFPALWINDIFMKRIKANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + DL +LYG+ FE YE YE+ + V I A LW+K+L FETG P++ Sbjct: 347 DPADTPDLCNLYGEAFEKRYEEYEKD----DSIVKEIIDAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------------------- 602 FKD N +P H G++ SSNLCTEI N+ + + Sbjct: 403 FKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNYYQIKVIFENGEELHYDEEERVVIDGG 462 Query: 603 -------------------------------GSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + LA + A+R+ Sbjct: 463 YEKPAKKISTLDSINGQKVFIVEKFKNDGKTAVCNLASINLSKVHTKEDLARVVPIAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E DE ME +S Sbjct: 523 LDNVIDLNFYPHIKVKNTNLKSRAIGLGVMGEAQMLAENQIFWGSEEHFNKIDEIMECLS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 + AI AS LA E+G+Y FKGS W +G+FPID A+ + S WD+L+ Sbjct: 583 YEAILASSNLAIEKGSYPDFKGSKWSEGIFPIDVASEKAKALTLRDGLFAQSSCDWDQLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 QKVKNDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + A+E+D L+++A+ R KWIDQ Sbjct: 699 ------NLETW---------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY A +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYTLAHELGVKSTYYLRSES----------PDSEKINVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|57169016|ref|ZP_00368144.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228] gi|305432548|ref|ZP_07401709.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter coli JV20] gi|57019561|gb|EAL56251.1| ribonucleoside reductase, alpha subunit [Campylobacter coli RM2228] gi|304444259|gb|EFM36911.1| ribonucleotide-diphosphate reductase alpha subunit [Campylobacter coli JV20] Length = 789 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 438/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L + +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+DV +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTQDLCDLYGEAFEKRYEEYEKD----ESIAKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDNANKANPNAHVGIIRSSNLCTEIFQNTEPNYYKIKVVFENGDEKHFDEEERVIIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSFNGNKVYIVEKYKSDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEARIHWGSDEHLNKIDEIMEKIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 + AI+AS LA E+G+Y F+GS W +G+FPID A+ + S WD+L+ Sbjct: 583 YEAINASSNLAIEKGSYPDFEGSNWSKGIFPIDVASEKAKALTLREGLFNQSECDWDKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKEDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLETWQYYTPAYELDQRILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNDIYQLAWELGVKSTYYLRSES----------PDSEKINIADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|227871658|ref|ZP_03990073.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium sinus F0268] gi|227842500|gb|EEJ52715.1| ribonucleotide-diphosphate reductase subunit alpha [Oribacterium sinus F0268] Length = 839 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 271/918 (29%), Positives = 432/918 (47%), Gaps = 126/918 (13%) Query: 26 IKGVQ-VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + +Q +IKR + KI RA+ KAF++ Q+ + L + L Sbjct: 1 MGAMQTIIKRGLLEEDYQGEKIERAMEKAFLSEGISVE------QEKLHFLLGKVEESLA 54 Query: 85 QHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 + ++ V +E+IQ+ VE +LM +G +K+ R Y+LYRE+R+ +R + K + Sbjct: 55 EKHR----VSVEEIQNAVEEALMHNGDYKVARAYILYREKRTLLRHLRQRIKEEIGDNEI 110 Query: 145 LKIMMDDGTLIS-FNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ RL G Q++S ++ L Sbjct: 111 DDVLRRCQKDFPDYDLARLSAKYLSLSKGEQELSKRL-------------------ALLT 151 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L +E P + ++ R +E+ + + + ++ L E+ Sbjct: 152 RAAAELTTQEEPGWERIAGRLRSYHFHKELKKAEESRNLHSFYDKLVYL--------TEQ 203 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI-EMPQAFF 321 G+ + E ++ LA + R+ F Y GL +L RY + + + E PQ + Sbjct: 204 GLYGAYILEHYSKEEVEELAKFIDQSRNDLFGYSGLDLLLSRYLIRDHQHVVLESPQEMY 263 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 + ++M LA+KE + + EFY+++S +TPT N+ + QLSSCF+ TVPD L Sbjct: 264 LGISMHLAMKEKENRLQYVKEFYDMMSLHQVTMATPTQSNARKPYHQLSSCFIDTVPDSL 323 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ ++ + A ++KY GG+G + VR G I G G S GVI +++V NDTAVAV+Q Sbjct: 324 DGIYQSISKFADVSKYGGGMGMYFGKVRSRGGKIRGFEGASGGVIRWIRVVNDTAVAVDQ 383 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498 G R+GAV YL+ WH D+ EFL L+ N GDDR + HD+ A PDLF K+V + N Sbjct: 384 LGMRQGAVAVYLDAWHKDLPEFLQLKTNNGDDRMKAHDVFPAVCYPDLFWKKVKEDLNQE 443 Query: 499 WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 W L P ++ L D YG+E+E YE+ R + K L R +L Sbjct: 444 WYLMDPHDIFLVKGYCLEDFYGEEWETRYEDCVRDNRISKRVYVLK----DLVRLILKSA 499 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------- 596 ETG P+ ++D N +P +H G+++ SNLCTEI N E Sbjct: 500 VETGTPFAFYRDTVNRMNPNKHKGIIYCSNLCTEIAQNMKEAEICERKVVTKDGDEVIVS 559 Query: 597 ------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 VCNL S+ L NQ +L +T VR LDNVID+N + + +A+ +N Sbjct: 560 TVKPGDFVVCNLASLCLGNIPVENQP---ELERITKTVVRALDNVIDLNFYPVAEAEITN 616 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +RAIGLG+ G+ L HI + S E ++ D+ E I++ AI AS ELA+ERGAYS+ Sbjct: 617 KRYRAIGLGVSGYHHMLAKHHIAWESQEHLDFVDKVFENINYAAIKASSELAKERGAYSA 676 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F GS W+ G + + + W+ LK+ V G+RN+ +A APT+ Sbjct: 677 FAGSEWESG--------------EYFSRRNYNSPRWESLKQEVHE-GIRNAWILATAPTS 721 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + + + G S +DP +++ V Sbjct: 722 STSILIGTSAGLDPIMNRFFLEEKKGAILPRVAP-------------------------- 755 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 + D + +A ++D W + +A RQ+ IDQAQS N ++ +E +L +Y Sbjct: 756 -----ELSMDTYWYYKSAHQMDQTWSVRAAGLRQRHIDQAQSFNFWITNEYKMSELLNLY 810 Query: 890 RQAWLMGLKTTYYLRSRS 907 AW G+KT YY+RS++ Sbjct: 811 TLAWECGVKTIYYVRSKA 828 >gi|157414345|ref|YP_001481601.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni 81116] gi|218561717|ref|YP_002343496.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112359423|emb|CAL34205.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385309|gb|ABV51624.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni 81116] gi|315930489|gb|EFV09541.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 305] gi|315931282|gb|EFV10251.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 327] Length = 789 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFQKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIEGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|307746986|gb|ADN90256.1| Ribonucleoside-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni M1] Length = 789 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFQKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|121613048|ref|YP_999744.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] gi|167004719|ref|ZP_02270477.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni 81-176] gi|87249021|gb|EAQ71983.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 789 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFQKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|284925327|gb|ADC27679.1| ribonucleoside-diphosphate reductase subunit alpha [Campylobacter jejuni subsp. jejuni IA3902] Length = 789 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|317009306|gb|ADU79886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori India7] Length = 788 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 299/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|15611688|ref|NP_223339.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori J99] gi|7388069|sp|Q9ZLF9|RIR1_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|4155174|gb|AAD06201.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter pylori J99] Length = 788 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 300/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|57236936|ref|YP_178051.1| ribonucleotide-diphosphate reductase subunit alpha [Campylobacter jejuni RM1221] gi|148926840|ref|ZP_01810519.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8486] gi|57165740|gb|AAW34519.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni RM1221] gi|145844565|gb|EDK21672.1| ribonucleoside-diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8486] gi|315057465|gb|ADT71794.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Campylobacter jejuni subsp. jejuni S3] Length = 789 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|317181991|dbj|BAJ59775.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori F57] Length = 788 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 298/837 (35%), Positives = 436/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ L+DRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLHDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLFMKRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKQLVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 NNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +GVFPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGVFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------- 693 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + +A++I+ LI++A+ RQKWIDQ Sbjct: 694 ------------------------VPNLSAETWNFYTSAYDINAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|86153989|ref|ZP_01072191.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842527|gb|EAQ59740.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 789 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 437/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVAIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDNIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|317012491|gb|ADU83099.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori Lithuania75] Length = 788 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 299/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L + +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYADGTIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 SNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVECFN 786 >gi|188996382|ref|YP_001930633.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931449|gb|ACD66079.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 850 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 284/871 (32%), Positives = 431/871 (49%), Gaps = 92/871 (10%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202 ++ DGT F K+L + GL ++ + K + + ++ +L+ + Sbjct: 9 VVKRDGTQEKFQMKKLVDAIFALLEGLDLPDDYEIVFKITKELDLKIPEVVTTEELDYLV 68 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + LI Y + R LL+ + R + F YI Sbjct: 69 LKAIEHLIPTGSIYDTIATRQLLKIINRRIERRFS-----------------SFKDYINY 111 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321 V +LL +++FD+ L + + Y RD +Y GL L DRY IE PQ FF Sbjct: 112 AVNEKLLKPELLNFDIDLLESKIDYSRDNNLDYFGLSTLKDRYLTKDRNFETIEKPQWFF 171 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 MRVAMG+ E E ++ Y+ LS+ ++ STPTLFNSGT Q SSC++ V D L Sbjct: 172 MRVAMGIGNTEEE----ILKIYDKLSNLEYLHSTPTLFNSGTLTNQYSSCYVNVVDDSLE 227 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I +E A LAKY+GG+G D T +R G+ IH N KS G+IPF+K+ + A+ QG Sbjct: 228 SIMDKAKETAFLAKYAGGVGTDITRIRATGSKIHSLNAKSSGIIPFIKIFDTIVNAIQQG 287 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R+ + YL+ WH+DVE FLDLR+ TG+ RT +NTA W+PD M+R+ + L Sbjct: 288 GRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDEIMRRIKEGEPIYL 347 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P E +L YG+EF Y+ +A+RGE+++++KI + ++K L L +TGHPW+ Sbjct: 348 FDPAECRELVTSYGEEFAKKYQECIEKAERGELELWKKIDSRDFYKKYLFKLAKTGHPWL 407 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-------- 613 TFKD N +P V++SSNLCTEI++ +S + TAVC L S+NL H Sbjct: 408 TFKDAHNRHNPCPKYSVINSSNLCTEISIPNSPQSTAVCTLASVNLARHLKKVERETSDV 467 Query: 614 ---------------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + D+DKL T+ T V LDN++D N + E+++K+ Sbjct: 468 KREELSPNEKNTSHLLTYSPTHSIDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMD 527 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R IG+GLMGF AL L IPY S EA+E+A E +F+ S ELA+ERGA+ + Sbjct: 528 LRPIGIGLMGFHEALIYLGIPYDSDEAIELAKEIAKFMRETVYRKSEELAKERGAFPHYY 587 Query: 713 G-SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 S + + + + L + + RN+ +AIAPTA+ Sbjct: 588 EVSKRESEKVKSEELNPNEKTPTHLLTYSPTHPYNYPPR--------RNAVLLAIAPTAS 639 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I G S SID + N++ + +SG F VVN L+ L+++ +W+E M+ +K + GSI Sbjct: 640 ISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEMLEKIKANQGSI 699 Query: 832 GNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYR 890 I+ + + K++ TA+E+ P I+ A+ Q++IDQA S +LY++E ++ IY Sbjct: 700 QYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDMENIYM 759 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVD-----------------------GKLNAVP 927 AW GLK+TYY EK T+ ++ Sbjct: 760 YAWEKGLKSTYYCFIDKTIKGEKYTMNVNKRGERRGFGLARAKDQVNKDLEELERMAREK 819 Query: 928 VTDPNSSTHSLGIPSSCTSDT----ECEVCQ 954 D G +C +D C C+ Sbjct: 820 YGDEIVDKVKAGNVDACPTDPLLAKICPSCE 850 >gi|268678696|ref|YP_003303127.1| ribonucleoside-diphosphate reductase, subunit alpha [Sulfurospirillum deleyianum DSM 6946] gi|268616727|gb|ACZ11092.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurospirillum deleyianum DSM 6946] Length = 788 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 283/820 (34%), Positives = 417/820 (50%), Gaps = 106/820 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +G + + +++ A GL +VS + + D ++ +++ LI Sbjct: 1 MLTVQKRNGRIEPLDISKIQKYTSSAIKGLDNVSQSELEVDAKIQFRDKITTEEIQKTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L +V F Y E Sbjct: 61 KTAVDKIDIDRPNWTFVAARLFLYDLYHKVSGFTGYGS---------------FKEYFER 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 K + + + +DL L ++ ERD F YLG++ L+DRY + G IE+PQ Sbjct: 106 CEKEGRIALGLKEKYDLADLEAYIQPERDLQFNYLGIKTLHDRYLIKNKEGKPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM ++M LA E + A +FY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMAISMFLAQNELNSQDWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E ++L+K+ GG+G DW VR +G I G + GVIPFLK+ ND AVAV+Q Sbjct: 226 EGIFDSYKEMSLLSKFGGGIGWDWNLVRSMGGMIDGHKNAAGGVIPFLKITNDIAVAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH+D+ +FLDL+KN+G++RRR H++ A WI DLFMKRV NA WT Sbjct: 286 LGTRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHELFPALWINDLFMKRVESNAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P + DL ++YG+EFE Y YE E I A LW+K+LT FE+G P+ Sbjct: 346 LFDPAQTPDLCEVYGEEFERRYSAYE----HDESVTKEYILAKELWKKILTSYFESGSPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601 + FKD N +P H G++ SSNLCTEI N+ + Sbjct: 402 LCFKDSANKVNPNDHAGIIRSSNLCTEIFQNTQPNHYKIKIVFNDQTFITYEERDLVKVD 461 Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + A+ Sbjct: 462 SGITKEAKKITALDSIDGKDIFIVEKEMIEGKTAVCNLASVNLSKIHTKEDIERVLPIAI 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N RA+GLG+MG L I + S E DE ME Sbjct: 522 RMLDNVIDLNFYPHAKVKHTNLKSRAVGLGVMGEAQMLAEKGIEWGSYEHFSKIDEVMEA 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS++AI AS LA E+G Y F GS W +G+FPID+ A+ + W+ L Sbjct: 582 ISYNAILASSNLAIEKGVYPEFSGSKWSKGIFPIDTANEEAKKLVDRGGLFGYMYDWESL 641 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 642 REKVKNNGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEENLSGMIPVVAPNL--- 698 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + W + A+E+D L+++ + RQKWIDQ Sbjct: 699 --NPNTWT--------------------------FYTPAYELDQRILVKAGAIRQKWIDQ 730 Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QSLN+++ + SGK L+ IY AW +G+K+TYYLRS+S Sbjct: 731 GQSLNIFITLDKASGKYLNDIYMLAWKLGIKSTYYLRSQS 770 >gi|296271634|ref|YP_003654265.1| ribonucleoside-diphosphate reductase subunit alpha [Arcobacter nitrofigilis DSM 7299] gi|296095809|gb|ADG91759.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcobacter nitrofigilis DSM 7299] Length = 794 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 288/820 (35%), Positives = 430/820 (52%), Gaps = 101/820 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L I +G + +++ + A GL+ VS + + DG+S SD++ ALI Sbjct: 2 ALMIQKRNGRKEVLDITKIQKMSIAATEGLEGVSQSELELDAQIKFIDGMSSSDIQDALI 61 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR + L V T +A H YI+ Sbjct: 62 KTAIEKIDIDVPNWTFVAARLFIFNLYHRVGRTTNSVKGEAYSH---------MSDYIKT 112 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAF 320 A + + +DL L N LK ERD F YLG++ LYDRY + IE+PQ Sbjct: 113 AQDAGRMIPGLERGYDLEDLNNYLKPERDLQFNYLGIKTLYDRYLIKDKNSDPIELPQHM 172 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E +K+ RA EFY+++S F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 173 FMGIAMFLAQDEDDKQARAKEFYDVVSKFEVMLATPTLSNARTNRHQLSSCYIGSSPDNI 232 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF +E A+L+KY GG+G DW +R LG I G + G +PFLK+ ND A+AV+Q Sbjct: 233 EGIFDGYKEMALLSKYGGGIGWDWNQIRALGGAIDGHKSAAGGTVPFLKITNDIAIAVDQ 292 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WH+D+ +FLDL+KN+G++RRR HD+ + WI DLFM+R+ +++ WT Sbjct: 293 LGTRKGAIAVYLEPWHMDISDFLDLKKNSGEERRRAHDLFPSLWICDLFMQRIMEDSHWT 352 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P++V DL +L+G FE Y YE V +I A LW+K+LT FE+G P+ Sbjct: 353 LFDPNDVKDLSELHGDAFEKRYIEYE----NDNSIVKDRIKAKDLWKKILTSYFESGSPF 408 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------------------- 601 + FKD N +P HVG + SSNLCTEI N++ + + Sbjct: 409 LCFKDNANRANPNAHVGHIRSSNLCTEIFQNTNPNKYKIKLEFDDGSIELYDEDDTIKVD 468 Query: 602 --------------------------------LGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + TA+ Sbjct: 469 SGIIKKANKVTALDSVGGKKIFIVEKEKTDGDTAVCNLASVNLSKIHTKEDIERVVPTAI 528 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + + K K +N R+IGLG+MG L + + S + ++ D+ ME Sbjct: 529 RMLDNVIDLNFYPLRKVKATNLKSRSIGLGVMGEAQMLAEEKLVWGSVDHLKKIDKVMEA 588 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS++AI +S ELA E+G Y +F GS W +G+ P D E + + WD L Sbjct: 589 ISYNAIKSSAELAVEKGKYPTFDGSNWSKGIMPHDHAPQAVNALVEKDL-FDTGYDWDAL 647 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 + +VK GMRN MA+APT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 648 RAQVKKDGMRNGYLMAVAPTSSISILVGTTQAIEPVYKRKWYEENLSGLIPVV------- 700 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + ++ + + A+E+D + +I++A+ RQKWIDQ Sbjct: 701 ------------------------VPKLSPETWSYYTPAYEVDQLDIIKAAAVRQKWIDQ 736 Query: 870 AQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QS N++L + SGK + IY AW +GLK+TYYLRS+S Sbjct: 737 GQSTNIFLSLDKASGKYMHQIYTLAWQLGLKSTYYLRSQS 776 >gi|237751458|ref|ZP_04581938.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter bilis ATCC 43879] gi|229372824|gb|EEO23215.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter bilis ATCC 43879] Length = 785 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 284/817 (34%), Positives = 424/817 (51%), Gaps = 108/817 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ +G++ + +++ A GL S + + YDG++ ++ LI ++ Sbjct: 6 VIKRNGSMEELDITKIQKHTSSAVEGLSGTSQSELEVDAKLQFYDGITTERIQDTLIKTA 65 Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 I+ PN+ V AR L L V Y + + Sbjct: 66 VDKIDVASPNWTFVAARLFLYDLYHRVSRFTG--------------YRHLREYFEVGERE 111 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRV 324 +LL FDL L + + +RD F YLG++ LYDRY L NG IE+PQ FM + Sbjct: 112 GKLLKGLKEKFDLDLLDSKIVADRDLQFNYLGIKTLYDRYLLKDSNGKPIELPQHMFMAI 171 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AM LA E + + A++FY+ LS+F MC+TPTL N+ T QLSSC++ + PD++ GIF Sbjct: 172 AMFLAQNEKDCNEWAIKFYDALSNFEVMCATPTLSNARTTRHQLSSCYIGSTPDNIEGIF 231 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + +E A+L+KY GG+G D++ VR +G+ I G + G+IPFLK+ ND A+AV+Q G R Sbjct: 232 DSYKEMALLSKYGGGIGWDFSQVRTIGSFIDGHKNAAGGIIPFLKITNDIAIAVDQLGTR 291 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 KGA+ Y+E WH DV EF++LRKN+G++RRRTHD+ A WI DLFM+RV Q++ W+ F P Sbjct: 292 KGAIATYIEIWHNDVTEFIELRKNSGEERRRTHDLFPALWICDLFMERVLQDSQWSFFDP 351 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +L +LYG EF+ YE E+ + V + A LW+K+L FETG P++ FK Sbjct: 352 YTCRELTNLYGDEFKKRYEELEKMPNM----VVSSMPAKDLWKKILNSYFETGLPFLCFK 407 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC------------------------ 600 D N +P H G++ SSNLCTEI N+ V Sbjct: 408 DSANRANPNAHSGIIRSSNLCTEIFQNTEPSHYRVEVEFDDGERIYFEESEEVVVDSGVT 467 Query: 601 ---------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 NL + + ++ + + AVR+LD Sbjct: 468 KRANKLTSIDSLKGKKIFNTQRVQTGGQTAVCNLASINLSKIHTHEDIERIVPIAVRMLD 527 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NVID+N + K K +N +RAIGLG+MG L + + S + D ME IS++ Sbjct: 528 NVIDLNFYPSRKVKVTNMANRAIGLGVMGEAELLASKLVLWGSEAHFSLIDSIMEAISYN 587 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 AI AS LA+ERGAY +++GS W +G+FPID A + + + R W+ L+ V Sbjct: 588 AIKASAMLAKERGAYPTYEGSNWSKGIFPID----KANEKAKAIVERIFHYDWESLRDLV 643 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 K+ G+RN MAIAPT++I+ + G +Q+I+P Y+ ++ + N+SG V Sbjct: 644 KSEGIRNGYLMAIAPTSSISILVGTTQTIEPIYKQIWHEENLSGMIKSV----------- 692 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + + + + +A+ I+ L+ +A+ RQKWIDQ QSL Sbjct: 693 --------------------VPNLTLETINFYPSAYSINQHDLVRAAAVRQKWIDQGQSL 732 Query: 874 NLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 N++ LD SGK+L IY AW +GLK+TYYLRS+S Sbjct: 733 NIFIRLDSVSGKQLHEIYMLAWSLGLKSTYYLRSQSK 769 >gi|222823071|ref|YP_002574644.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter lari RM2100] gi|222538292|gb|ACM63393.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter lari RM2100] Length = 791 Score = 519 bits (1335), Expect = e-144, Method: Composition-based stats. Identities = 293/867 (33%), Positives = 439/867 (50%), Gaps = 133/867 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A + L +VS + + DG+S +++ LI Sbjct: 1 MKVLKRNGRTEELDVSKIKKYTTDAVANLDNVSQSELEVDAKIQFRDGISTEEIQQTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V ++ Y+E+G Sbjct: 61 TAVDKIDIDRPNWTFVAARLFLYDLYKKVSGFTG---------------YKHLREYLEKG 105 Query: 264 VKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFF 321 K + + + +DL L +K ERD F YLG++ LYDRY + G IE+PQ F Sbjct: 106 EKEGRILIGLKEKYDLDDLNAYIKPERDLQFTYLGIKTLYDRYLIKDSKGMPIELPQQMF 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + + A +FY+L+S+F M +TPTL N+ T QLSSC++ + D++ Sbjct: 166 MAIAMFLAQNELDSQTWAKKFYDLISTFEVMLATPTLSNARTTRHQLSSCYIGSTSDNIE 225 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q Sbjct: 226 GIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQL 285 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ Y+E WH+D+ +FLDLRKN+G++RRR H++ A WI DLFMKRV N WTL Sbjct: 286 GTRKGAIAVYIEPWHMDINDFLDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + + L DLYG+EFE YE +E+ E V + A LW+K+L FE+G P++ Sbjct: 346 FDPADTASLCDLYGQEFEKRYEEFEKD----ESIVKEIVDAKELWKKILLSYFESGLPFL 401 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ + Sbjct: 402 CFKDSANKTNPNSHAGIIRSSNLCTEIFQNTEPNYYQIKITFDDKTELHLDEDEELTIDG 461 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + TA+R Sbjct: 462 GYKKLAKKVSTLDSINGKKVYIVEKYKNEGKTAVCNLASINLSKINTKEDIQRVVPTAIR 521 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S E E D ME I Sbjct: 522 MLDNVIDLNFYPHVKVKNTNLKSRAIGLGVMGEAQMLAEAQIYWGSNEHFEKIDRIMEMI 581 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDEL 749 S+ AI AS LA E+G+Y F+GS W +G+ PID A+ + S W++L Sbjct: 582 SYEAILASSNLALEKGSYPDFEGSNWSKGIVPIDVANENAKKLTASEGLFDQSECDWEKL 641 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 ++++K G+RN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG V Sbjct: 642 REKLKRDGIRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPTV------- 694 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + + + A+E+D L+++A+ R KWIDQ Sbjct: 695 ------------------------VPNLSANTWQYYTPAYELDQKILVKAAAIRGKWIDQ 730 Query: 870 AQSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 QSLN++ LD+ SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 731 GQSLNIFVSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSQKVNDDV 780 Query: 928 VTDPNSSTHSLGIPSSCTSDTECEVCQ 954 V ECE CQ Sbjct: 781 VDRTI----------------ECEGCQ 791 >gi|86150529|ref|ZP_01068753.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152387|ref|ZP_01070597.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|205355764|ref|ZP_03222534.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8421] gi|315123636|ref|YP_004065640.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85838981|gb|EAQ56246.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840684|gb|EAQ57936.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|205346541|gb|EDZ33174.1| ribonucleoside diphosphate reductase alpha chain [Campylobacter jejuni subsp. jejuni CG8421] gi|315017358|gb|ADT65451.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 789 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 297/866 (34%), Positives = 438/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L ++V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKKVNGM--------------NRYNHLREYFEKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L + +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELHFDEEQKVVIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y F+GS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWVKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + D + + A+E+D L+++A+ R KWIDQ Sbjct: 695 -----------------------VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVADR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|283953643|ref|ZP_06371174.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794684|gb|EFC33422.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni 414] Length = 789 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 299/866 (34%), Positives = 436/866 (50%), Gaps = 133/866 (15%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ +G + +++ +A L+ V+ + + DG+S +++ LI Sbjct: 1 MKVIKRNGRTEELDVTKIKKCTSDAVKDLEGVNLSELELDAKIQFRDGISTEEIQKTLIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I+ + PN+ V AR L L + V Y + + Sbjct: 61 TAVDKIDIDCPNWTFVAARLFLFDLYKRVNGM--------------NRYNHLREYFQKGE 106 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFM 322 + R+L +DL L +K ERD F YLG++ LYDRY + G IE+PQ FM Sbjct: 107 KEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFM 166 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LA E ++ A +FY+L+S F M +TPTL N+ T QLSSC++ + PD++ G Sbjct: 167 AIAMFLAQNEFNSQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIGSTPDNIEG 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF + QE ++L+K+ GG+G DW+ VR +G I G + G+IPFLK+ ND AVAV+Q G Sbjct: 227 IFDSYQEMSLLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DLFMKRV N WTLF Sbjct: 287 TRKGAIAVYIEPWHMDIGDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTLF 346 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P + +DL DLYG+ FE YE YE+ E + A LW+K+L FETG P++ Sbjct: 347 DPADTADLCDLYGEAFEKRYEKYEKD----ESITKEIVEAKDLWKKILLNYFETGLPFLC 402 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------------------- 601 FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 403 FKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDEVHFDEDQKVMIDGG 462 Query: 602 ------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVRV 631 NL + + + + + + TA+R+ Sbjct: 463 YEKPAKKISTLDSINGNKVYIVEKYKNDGKTAVCNLASINLSKVYTKEDIERVVPTAIRM 522 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + K K +N RAIGLG+MG L I + S E + DE ME IS Sbjct: 523 LDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAETKIHWGSDEHLNKIDEIMEQIS 582 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA-MNRTSRLPWDELK 750 F AI+AS LA E+G+Y FKGS W +G+FPID A+ + S W +L+ Sbjct: 583 FEAINASSNLALEKGSYEDFKGSNWSKGIFPIDVASPKAKALTLREGLFDQSECDWAKLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLSGMIPVVVPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 D W + + A+E+D L+++A+ R KWIDQ Sbjct: 699 -SLDTW--------------------------QYYTPAYELDQKILVKAAAVRGKWIDQG 731 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S K+N Sbjct: 732 QSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES----------PDSEKVNVTDR 781 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + ECE CQ Sbjct: 782 SI------------------ECEGCQ 789 >gi|210134885|ref|YP_002301324.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori P12] gi|210132853|gb|ACJ07844.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Helicobacter pylori P12] Length = 788 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 298/837 (35%), Positives = 437/837 (52%), Gaps = 107/837 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ +G + + +++ ++A L+ VS + + D ++ +++ LI Sbjct: 1 MITVVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARLQFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN++ V +R L L +V + Y E Sbjct: 61 KTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLKEYFEN 105 Query: 263 GVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE+PQ Sbjct: 106 AEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHM 165 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + PD++ Sbjct: 166 FMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDNI 225 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A+AV+Q Sbjct: 226 EGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQ 285 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV ++A WT Sbjct: 286 LGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWT 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE G P+ Sbjct: 346 LFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFEAGLPF 401 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------------------- 600 + FKD N +P H G++ SSNLCTEI N++ + Sbjct: 402 LAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTD 461 Query: 601 -------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 NL + + + + + V Sbjct: 462 DNITKCANKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMV 521 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D ME Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 IS+HAI S LA+E+G Y F+ S W +G+FPID A E + + W L Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-CDWQGL 640 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +++VK+ GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 641 REKVKSNGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL--- 697 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + + +A++ID LI++A+ RQKWIDQ Sbjct: 698 -------NVETWN---------------------FYTSAYDIDAKDLIKAAAVRQKWIDQ 729 Query: 870 AQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 QS+N++L + SGK L IY AW +GLK+TYYLRS S + +KS L N Sbjct: 730 GQSINVFLRIENASGKTLHEIYTLAWKLGLKSTYYLRSESPSIDKKSVLDRSVECFN 786 >gi|152993944|ref|YP_001359665.1| ribonucleotide-diphosphate reductase subunit alpha [Sulfurovum sp. NBC37-1] gi|151425805|dbj|BAF73308.1| ribonucleoside-diphosphate reductase, alpha subunit [Sulfurovum sp. NBC37-1] Length = 789 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 292/819 (35%), Positives = 435/819 (53%), Gaps = 103/819 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++++ +G + + + +++ A GL DVS + + D ++ +++T LI Sbjct: 1 MVRVVKRNGRVETLDVSKIQKYTSAAVEGLDDVSQSELEVDAKLQFRDMITSEEIQTTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L + + Y + Sbjct: 61 KTAVDKIDIDRPNWTFVAARLFLYDIYHKATGFTG--------------YNHLREYFERG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 + R++ +DL L + +K ERD F YLGL+ LYDRY L NG IE+PQ F Sbjct: 107 EKEGRIVLGLKDKYDLDDLNDYIKPERDLQFNYLGLRTLYDRYLLKDRNGVPIELPQQLF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M VAM LA E + + A +FY++LS F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MGVAMFLAQNEFDCQTWAKKFYDILSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF +E A+L+K+ GG+G DWT VRG+G++I G + G++PFLK+AND A+AV+Q Sbjct: 227 GIFDGYKEMALLSKFGGGIGWDWTLVRGMGSYIDGHKHAAGGIVPFLKIANDVAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH+DV +FLDL+KN+G++RRR HD+ A W+ DLFMKRV ++A WTL Sbjct: 287 GTRKGAIAVYLEPWHVDVRDFLDLKKNSGEERRRAHDLFPALWLNDLFMKRVEEDATWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P EV++L +LYG+EFE Y E ISA LW+++L FETG+P++ Sbjct: 347 FDPFEVTELTELYGEEFEKRYVELEHSDAD---ITREVISAKGLWKEILRSYFETGNPFL 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------------- 595 TFKD N +P +HVG++ SSNLCTEI N++ Sbjct: 404 TFKDAANRANPNKHVGIIRSSNLCTEIFQNTAPNTYKTRFTFTDGSIESYDENEMLTVDN 463 Query: 596 -------------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 E + NL + + + +A + TAVR Sbjct: 464 GTTKPAKKVTALDSLGGKQIWIVDKEKIDGDTAVCNLASINLSKIHTKEDIARVVPTAVR 523 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + + K K++N R+IGLG+MG L I + S + DE ME + Sbjct: 524 MLDNVIDLNFYPLAKVKRTNEKSRSIGLGVMGEAQMLAENQIAWGSHDHFTKIDEVMESV 583 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AI AS LA E+G Y +F GS W +G+FPID A + W L+ Sbjct: 584 SYYAIEASSNLALEKGKYPTFDGSDWSKGIFPIDKANENACKLVDRGGLFGYSHDWTALR 643 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VKT GMRN MA+APT++I+ + G +Q+I+P Y+ + + N+SG V Sbjct: 644 EKVKTDGMRNGYLMAVAPTSSISILTGTTQAIEPVYKRKWFEENLSGLIPVTAP------ 697 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 ++ D + + A+++D LI++ + RQKWIDQ Sbjct: 698 -------------------------KLSPDTWQYYTPAYDLDQNVLIKAGAIRQKWIDQG 732 Query: 871 QSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QSLN+++ + SGK L+ IY AW GLK+TYYLRS+S Sbjct: 733 QSLNIFITLDKASGKYLNEIYMNAWKFGLKSTYYLRSQS 771 >gi|224418360|ref|ZP_03656366.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter canadensis MIT 98-5491] gi|253827680|ref|ZP_04870565.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter canadensis MIT 98-5491] gi|313141891|ref|ZP_07804084.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT 98-5491] gi|253511086|gb|EES89745.1| Ribonucleoside-diphosphate reductase large chain 1 [Helicobacter canadensis MIT 98-5491] gi|313130922|gb|EFR48539.1| ribonucleoside-diphosphate reductase [Helicobacter canadensis MIT 98-5491] Length = 790 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 295/866 (34%), Positives = 435/866 (50%), Gaps = 131/866 (15%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L ++ DG + + +++ ++ GL+ VS + + + D ++ +++ LI Sbjct: 1 MLTVIKRDGRIEPLDVTKIQKYTRDSVVGLEGVSQSELEVDAKLHFRDKITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L V K K + Sbjct: 61 KTAVDKIDIDCPNWTFVAARLFLYDLYHRVNGFNGYKSLKEYLEIGEK------------ 108 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 + R++ F+L L + +RD F YLG++ LYDRY L G IE+PQ F Sbjct: 109 --ENRIIKGMKEKFNLEKLNLKIDPKRDLQFTYLGIKTLYDRYLLKDKKGQPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + A +FY+LLS F M +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAIAMFLAQNEKDPTYWAEQFYDLLSKFEVMAATPTLSNARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + +E A+L+KY GG+G D++ +RGLG+ I G + GVIPFLK+ ND A+AV+Q Sbjct: 227 GIFDSYKEMALLSKYGGGIGWDFSKIRGLGSFIDGHKNAAGGVIPFLKITNDIAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH D+ +F+D++KN+G++RRR HD+ A WIPDLFMKRV ++ W L Sbjct: 287 GTRKGAIAVYLEPWHSDIFDFVDIKKNSGEERRRAHDLFPALWIPDLFMKRVAEDGLWNL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F +DL +LYG+ FE Y+ YE D + I A LW+++LT FE G P++ Sbjct: 347 FDALTCADLTNLYGEAFEKRYKEYENNPDIPK----ETIKAKDLWKRILTSYFEVGSPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------------------- 601 FKD N +P H G++ SSNLCTEI N+ + + Sbjct: 403 CFKDNANRANPNSHTGIIRSSNLCTEIFQNTEPNKCFIRVEFEDGTIEDYEEYQEVKTDC 462 Query: 602 -------------------------------LGSINLLAHFANNQFDYDKLASTIRTAVR 630 NL + + + + + A+R Sbjct: 463 GIIKSSNKITSTDSINGKKVFIAQRESIDGKTAVCNLASINLSKINTKEDIERVVPVAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N + K K +N RAIGLG+MG L I + S + +E DE ME I Sbjct: 523 MLDNVIDLNFYPNRKVKVTNLDTRAIGLGVMGEAQMLAENKIQWGSQKHLEKIDEIMEMI 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AISAS +LAQE+G Y+ F S W +G+FPID A+ + WD L+ Sbjct: 583 SYNAISASCKLAQEKGVYNDFANSSWSKGIFPIDKANSEAKALVDRGGLFGFVYDWDSLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + VKT G+RN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EEVKTKGIRNGYLMAIAPTSSISILVGTTQTIEPIYKRKWFEENLSGLIPVVAPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + W+ + +A+EID +I++A+ RQKWIDQ Sbjct: 699 -SLENWN--------------------------YYTSAYEIDQTLIIKAAAIRQKWIDQG 731 Query: 871 QSLNLY--LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QS N++ LD+ SG+ L+ IY AW +GLK+TYYLRS+S E +T Sbjct: 732 QSTNIFISLDKASGRYLNDIYSLAWRLGLKSTYYLRSQS-VEAENTTSAIDRSI------ 784 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 785 --------------------ECEGCQ 790 >gi|315452682|ref|YP_004072952.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter felis ATCC 49179] gi|315131734|emb|CBY82362.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter felis ATCC 49179] Length = 788 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 293/819 (35%), Positives = 425/819 (51%), Gaps = 109/819 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ +G N ++++ + A GL+ ++ + E + DG+ D++ LI Sbjct: 6 EVRVIKRNGRTEPLNVEKIQKYIISATEGLEGINKDELELEAHF-FKDGIKTQDIQQTLI 64 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ PN++ V AR L L +V + K A + E+ + E Sbjct: 65 KTAIDHIDVHAPNWSFVAARLFLFDLYHKVSGFMGYKH-LAEYFEVGEREGRIVRGFKE- 122 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFF 321 FDL L + L+ +RD F YLG++ L+DRY L IE+PQ F Sbjct: 123 ------------KFDLDRLNSALEPKRDLQFNYLGIKTLHDRYLLKDKQDRPIELPQHMF 170 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E++ ++A+ FY +LS F MC+TPTL N+ T + QLSSC++ + PD++ Sbjct: 171 MAIAMFLAQNESDPNEKALAFYEVLSRFEVMCATPTLANARTPNHQLSSCYVGSTPDNIE 230 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF + ++ A+L+KY GG+G D++ VR LG++I G S G IPFLK+ ND A+AV+Q Sbjct: 231 GIFDSYKDMALLSKYGGGIGWDFSQVRCLGSYIDGHKEASAGAIPFLKIVNDVAIAVDQL 290 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH DV EF+DLRKN+GD+RRR HD+ A WI DLFM+RV ++ WTL Sbjct: 291 GTRKGAIAVYLEIWHKDVLEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEEDGMWTL 350 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P SDL + YG F Y YE E + ++I A LW+K+LT FE+G P++ Sbjct: 351 FDPYVCSDLTECYGDVFTQKYLAYE----NNENIIKQRIEARTLWKKILTNYFESGLPFL 406 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600 FKD N H G++ SSNLCTEI + S V Sbjct: 407 GFKDNANNAHLNGHTGLIRSSNLCTEIYQMTGSSHYKVAVEFVDGSLEYYEEKDLITTDA 466 Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630 + NL + + +A + AVR Sbjct: 467 HITKKANKLTSNDSLKGKRIFMTTKIAQGGQVAVCNLASLNLSKVQSEADIARVVPIAVR 526 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDN+ID+N + I+KAK++N RAIG G+MG AL I + S E D ME I Sbjct: 527 MLDNIIDLNFYPIDKAKRTNLQSRAIGFGVMGEAQALAQARIEWGSVEHAHYIDALMEKI 586 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S+ I S +LAQERG+Y+ F+ S W +G+FP+D A W LK Sbjct: 587 SYTTILESCKLAQERGSYAHFENSEWSRGIFPMDKAKSQAWEISPHK----PTCDWGGLK 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 +VK G+RN MAIAPT++I+ + G +Q+I+P YQ + + N+SG VV Sbjct: 643 AQVKQHGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWFEENLSGMIPVV-------- 694 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + +A++IDP +I A+ RQKWIDQ Sbjct: 695 -----------------------VPELSLETWHYYTSAYDIDPKAIIRLAAVRQKWIDQG 731 Query: 871 QSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QSLNL+L D+ SGK L IY AW +GLK+TYYLR+ S Sbjct: 732 QSLNLFLRPDQASGKLLHEIYHLAWKLGLKSTYYLRTAS 770 >gi|330984036|gb|EGH82139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 610 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 336/626 (53%), Positives = 427/626 (68%), Gaps = 21/626 (3%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 V+KRNG +F+ + I+ A+ KAF A G+ AS+S ++++I ++ E + Sbjct: 4 VVKRNGQPVAFNGALIAAALSKAFNATLGESASQSSHLREVIASIVEGVTNAVAGKPS-- 61 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 V +E IQD VE LM R Y+LYREER+ VR +L + Sbjct: 62 --VDVETIQDLVERGLMAKDEAATARAYILYREERNKVRR-------PPEAPAQLYYTDE 112 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 + + L + +AC L +VS+ + ++T KN + G+ D+ A++ ++R +I Sbjct: 113 ADQTHPLSVELLTDYLAQACQDLPNVSASKLAADTLKNAFPGIKWGDVLKAMLITTRAMI 172 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 E+EP+Y+ V AR L +L+ E + Y + +E GVK L+ Sbjct: 173 EQEPDYSFVNARLLWLELKNESRAVLGLGSD--------ATYADDLKAALEFGVKNDHLN 224 Query: 271 ESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 ++D FD+ L L+ + D F YLG Q LYDRYFLH NG + E PQ FFMRVAMGL Sbjct: 225 PVLIDGTFDVDQLGRALREKGDMQFTYLGAQTLYDRYFLHSNGQKFERPQVFFMRVAMGL 284 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +L+E + +RA+EFYNL SSF +M STPTLFN+GT QLSSC+LTTVPDDL GI+ A+ Sbjct: 285 SLEEKKPTERAIEFYNLFSSFDYMASTPTLFNAGTLRSQLSSCYLTTVPDDLSGIYHAIH 344 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 +NAML+K++GGLGNDWTPVR LG++I GTNGKSQGV+PFLKV NDTAVAVNQGGKRKGAV Sbjct: 345 DNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAV 404 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 CAYLE+WH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV WTLFSP + Sbjct: 405 CAYLESWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDKGQWTLFSPSDAP 464 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 DLHDL GK FE Y YE AD GEIKV+++I+A LWRKML+MLFETGHPW+TFKDPCN Sbjct: 465 DLHDLVGKAFEERYTQYEAMADAGEIKVYKRIAAGDLWRKMLSMLFETGHPWLTFKDPCN 524 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +RSPQQHVGVVHSSNLCTEITLN+S +E AVCNLGSINL H + + D KL TI TA Sbjct: 525 LRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSINLPNHIVDGKLDLAKLQKTINTA 584 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHR 654 VR+LDNVIDIN +++ +A+ SN HR Sbjct: 585 VRILDNVIDINYYSVPQAENSNLKHR 610 >gi|145527768|ref|XP_001449684.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124417272|emb|CAK82287.1| unnamed protein product [Paramecium tetraurelia] Length = 621 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 228/602 (37%), Positives = 353/602 (58%), Gaps = 20/602 (3%) Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S +F +TPTLFNSGT +PQ+SSCFL + D + GI+ L+ A+++K +GG+G Sbjct: 1 MSQKYFTHATPTLFNSGTPYPQMSSCFLLDMVDDSIEGIYETLKRCALISKSAGGIGLSV 60 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFL 463 + +R ++I GTNG S G++P LKV NDTA V+QGG KRKG+ YLE WH D+ FL Sbjct: 61 SKIRSQDSYIRGTNGISNGLVPMLKVFNDTARYVDQGGGKRKGSFAIYLEPWHSDIISFL 120 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRKN G + +R D+ WIPDLFM+RV ++ WTL P+E L D YG+EF Y Sbjct: 121 QLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMCPNECPGLQDCYGQEFNKLYT 180 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +YE + +V + A LW++++ TG P++ +KD CN +S Q+++G + SSN Sbjct: 181 DYESKNM---GRV--TMKARQLWQEIIDAQISTGLPYMLYKDACNSKSNQKNLGTIKSSN 235 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHT 642 LCTEI +S +E AVCNL SINL ++ F++DKL + L+ VID+N + Sbjct: 236 LCTEIIQYTSPDEVAVCNLASINLQKLIKEDKTFNFDKLLEITKIITTNLNIVIDLNFYP 295 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +++A+ SN +R IG+G+ GF AL + IP+ S +A+E+ + E I + A S+ELA Sbjct: 296 VQQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKIFETIYYGACERSLELA 355 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 Q+ G Y +F GS QG+ D G+ + W+ LK+ + GMRNS Sbjct: 356 QQLGPYETFAGSPASQGILQFDMWGVSPK-----------LYDWNTLKQNIVKYGMRNSL 404 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A PTA+ + I ++S +P N+Y + ++G+F +N LV++L + +LW + + Sbjct: 405 LIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGEFVCINPHLVDDLIELNLWTPQIKN 464 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 L ++GS+ NI+ IP ++K+++ T +EI ++ A+ R +IDQ+QSLN+++ EP+ Sbjct: 465 KLIMNNGSVQNIDEIPTNIKQLYKTVWEISQKAILNLATSRAPFIDQSQSLNIHMAEPTM 524 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 K+ ++ AW GLKT YYLR+R A K T+ + S + Sbjct: 525 SKVTSMHFYAWEKGLKTGMYYLRTRPAADPIKFTVDVEALLKEGGQIKIQQSKQELIDES 584 Query: 942 SS 943 +S Sbjct: 585 AS 586 >gi|219118138|ref|XP_002179850.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408903|gb|EEC48836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 926 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 242/841 (28%), Positives = 388/841 (46%), Gaps = 116/841 (13%) Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSE 195 L + DG L +S +L + + GL ++ + + MY ++ Sbjct: 60 PKKHEDTLHVSKRDGRLELLDSTKLLQRLTDLSDGLDMRFLNLVALTESIVRGMYPNVTT 119 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +++ ++ +L + P+Y ++ AR L+ + + T + + + Sbjct: 120 HEIDVLAAETAASLGTQHPDYGRLAARILITQNHKTTPTCFSEAIETLYNSG-------- 171 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SR 313 +I+ V ++ + + + +ERD Y G + L Y L + Sbjct: 172 -KGFIDHKV------GELVRRRGPEIDSRIVHERDLEMTYFGYKTLERAYLLKKDNGNQV 224 Query: 314 IEMPQAFFMRVAMGLAL-------KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 +E PQ MRVA+G+ E + + A E Y+L+S F ++PTLF++GT HP Sbjct: 225 LERPQYLMMRVALGIHCTSKMSSRSEDDCLEAAFETYDLMSRGFFTHASPTLFHAGTTHP 284 Query: 367 QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSCFL + D + GI+ L+ A+++K +GG+G +R G I GT G S G++ Sbjct: 285 QLSSCFLVQMSEDSINGIYDTLKRCAVISKAAGGIGLSVHNIRARGTPIQGTRGVSNGLV 344 Query: 426 PFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 P L+V + T+ V+QGG KR GA YLE WH D+ + L L+KN G + +R D+ W Sbjct: 345 PMLRVFDVTSRYVDQGGGKRPGAFAIYLEPWHADIFDVLSLKKNHGKEEQRARDLFYGLW 404 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 IPDLFMKRV ++ W+L P + L YG +FE Y++YE+ E K R++ A Sbjct: 405 IPDLFMKRVEEDDVWSLMCPHQCPGLAHCYGAKFEALYQHYEQ-----EGKFVRQVRARE 459 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 LW +L ETG P++ +KD CN +S QQ++G + SNLCTEI S EETAVCNL S Sbjct: 460 LWGAILESQIETGTPYMLYKDTCNTKSNQQNIGTIQCSNLCTEIIQYSDQEETAVCNLAS 519 Query: 605 INLLAHFANN--------------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 I L + FD++ L + R L+++ID+N + ++ AK SN Sbjct: 520 ICLPRFVVSERGTFGSISPESGSAFFDHEALHRAAKIVTRNLNSIIDVNSYPVDGAKTSN 579 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HR IG+G+ G A L +P+ S A ++ + E I A+ AS ELA++ G Y + Sbjct: 580 FKHRPIGIGVSGLADAFLRLGLPFTSAAAKKLNEAIFETIYHAALEASAELAEKEGPYET 639 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRD----------------ELAMNRTSRLPWDELKKRVK 754 F GS QG + GL + + W+ L++R+ Sbjct: 640 FAGSPASQGKLQFNLWGLSDDETPSHKYALAKETPVPIQMYPNSSNVCGYDWESLRRRIV 699 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+RNS A + + V+ L + Sbjct: 700 KTGLRNSLSWA-----STS---------------------------------VSSLSAQT 721 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 ++ M GS+ NI IPD LK+++ T +EI +I+ + R K+IDQ Sbjct: 722 FRNQMMRD-----GGSVQNIPDIPDRLKELYKTVWEIKMKDIIDMGADRGKFIDQ----- 771 Query: 875 LYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 P+ KL ++ AW GLKT YYLR++ A + + T++ + + + + Sbjct: 772 ----NPNMDKLTAMHFYAWKKGLKTGMYYLRTKPAVNAIQYTVEKISPTVIVGGIPEAEP 827 Query: 934 S 934 Sbjct: 828 D 828 >gi|322510749|gb|ADX06063.1| putative ribonucleotide diphosphate reductase, large subunit [Organic Lake phycodnavirus 1] Length = 824 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 215/848 (25%), Positives = 377/848 (44%), Gaps = 91/848 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ + + ++ V + ++ ++ + ++D + S ++ L Sbjct: 1 MIHVLKRNSKKEVLSYDKILERVNKFIVKYNLNIQGSGLVLKVIDQLHDNIKTSQIDELL 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +Y+K+ + +E T++ E + Sbjct: 61 AEQCASMGTIHYDYSKLAGYICISNHHKETKRTLF----------------ESVNILCTK 104 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + +++ L + Y+R++ +Y G + L Y + + IE Q +M Sbjct: 105 KGYLSDNYYNIVKEHHKELETMIVYDRNYLIDYFGYKTLERAYLMRNDNMVIENIQHLWM 164 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLY 381 RVA+ + + + Y+ LS F+ +TPTL+N+GT PQLSSC+L + D + Sbjct: 165 RVAVQIHGN---CLPKVKDTYDGLSKKLFIHATPTLYNAGTTRPQLSSCYLLGMEEDSID 221 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF L++ A ++K++GG+G VR G I GTNG S G++P L+V N+TA V+QG Sbjct: 222 GIFNTLRDCASISKWAGGIGLHIHNVRAKGTSILGTNGTSNGIVPMLRVFNNTARYVDQG 281 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KR G+ YLE WH D+ EFL+LRKN GD+ R D+ A WIPDLFM+++ + W Sbjct: 282 GGKRNGSFAMYLEPWHGDILEFLELRKNHGDEEMRARDLFYALWIPDLFMRKIEHDEDWY 341 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P L ++YG+EFE YE+Y + +K+ A LW +L ETG P+ Sbjct: 342 LMCPHICKHLDNVYGEEFETLYESYV-----SSGQYLKKMKARELWFHILDSQMETGTPY 396 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-------- 612 + +KD CN +S Q+++G + SSNLC EI S +E+AVCNL SI+L + Sbjct: 397 MLYKDACNQKSNQKNIGTIKSSNLCCEIIEYSDKDESAVCNLASISLSSFVKKSKFKLNG 456 Query: 613 ---------NNQFDY-DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 DY +I+ + V+D+ + + + Sbjct: 457 PIVVYAKENCKWCDYLKSFLDSIKI---NYEVVMDVRQTMYPQLYAGDKKIGGFSDVISL 513 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISA------------------------- 697 F+S + + E + ++ + Sbjct: 514 FKSTFDYNGLHKITKMVTENLNRIIDVNYYPTDKTRQSNLKHRPIGIGVQGLADVFAMLN 573 Query: 698 ---SVELAQERGA---YSSFKGSLWDQGVFPIDSIGLLAEVRDEL-----------AMNR 740 + A+E + + SL + A + + Sbjct: 574 IAFDSDEAKEINKMIFETMYHASLEKSMEMAKEQQTQYASFKGSPLSEGILQFDMWNVTP 633 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + R W LK+ + G NS CMA PTA+ + I ++ +P N+Y + ++G+F Sbjct: 634 SKRYDWGALKQNIIKYGTMNSLCMAPMPTASTSQILSNNECFEPFTSNMYTRRTLAGEFM 693 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 V+N L+ EL ++W+ ++ +D+ + GSI +I IPD +K + +E+ +++ + Sbjct: 694 VINKHLMKELIDLNIWNMSIKNDILKYKGSIQSIAEIPDYIKAKYKIVWEMSMKTIMDMS 753 Query: 861 SRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 R +I Q+QS+NL+++EP+ K L ++ AW GLKT YYLR ++ ++ T+ Sbjct: 754 KDRGAYICQSQSMNLWVEEPNYKTLTNMHLYAWKCGLKTGMYYLRRKAKHHAQQFTVTPE 813 Query: 920 DGKLNAVP 927 V Sbjct: 814 KEPTECVS 821 >gi|269105097|ref|ZP_06157792.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268160732|gb|EEZ39230.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 647 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 243/672 (36%), Positives = 373/672 (55%), Gaps = 39/672 (5%) Query: 169 ACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKL 228 GL+ V V +YDG+ ++++ L ++ +L + P+YAK+ AR ++ L Sbjct: 2 LADGLK-VEPIAVAQRVVSGLYDGIKVTEIDVFLAETAASLATEHPDYAKLAARVMVSSL 60 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 ++E + + + Y ++ + + L + + Y+ Sbjct: 61 QKETSGYATATRELSEIGILSSAYVDFVAK------------------NQFALEDMIDYK 102 Query: 289 RDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 RD+ F+Y G + L Y L + G +E PQ FMRVA+ +A + + E Y+LLS Sbjct: 103 RDYQFDYFGYKTLERSYLLKVKGVVVERPQDMFMRVAVAVAGDD---LEEIRELYDLLSL 159 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 ++ +TPTLFN+G + QLSSCFL + D + GI+ L++ A+++K +GG+G + Sbjct: 160 CYYTHATPTLFNAGCKMQQLSSCFLLAMQEDSINGIYDTLKDCALISKSAGGIGLHIHNI 219 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-KRKGAVCAYLETWHIDVEEFLDLR 466 R GA I GTNG S G++P LKV N+TA V+QGG KRKG+ YLE WH D+E FLDLR Sbjct: 220 RATGAPIIGTNGVSNGIVPMLKVFNETARYVDQGGGKRKGSFAVYLEPWHADIESFLDLR 279 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KN G + R D+ A W+PDLFM+RV +A WTLFSP L DLYG EF Y+ YE Sbjct: 280 KNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFSPHNTKGLSDLYGAEFTQKYQEYE 339 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 R + I A L +++ ETG P++ +KD CN +S Q+++G + SSNLC Sbjct: 340 RMGL-----GVKTIKARQLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIKSSNLCA 394 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 EI S+ +ETA CNL S+ L N FD+DKL + A++ LD VID+N H +K Sbjct: 395 EIMEVSTPDETAACNLASLALPKFVTNTGFDFDKLHQVTKVAIKNLDRVIDVNYHPTDKI 454 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 +KSNH HR +GLG+ G +H+P+ S EA+ + + E + ++ AS E+A+++G Sbjct: 455 EKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKG 514 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 YSS+ GS G F D +SR W +LK ++ G+RNS +A Sbjct: 515 TYSSYDGSPISHGQFQFDLWCEQP----------SSRWDWSQLKHQIAEHGVRNSLLIAQ 564 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PTA+ A I G +++ + N+Y + +SG+F ++N +LV++L+QR LW + + Sbjct: 565 MPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIIL 624 Query: 827 HDGSIGNIERIP 838 ++GS+ I+ IP Sbjct: 625 NNGSVQGIDAIP 636 >gi|212697416|ref|ZP_03305544.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM 7454] gi|212675608|gb|EEB35215.1| hypothetical protein ANHYDRO_01986 [Anaerococcus hydrogenalis DSM 7454] Length = 805 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 264/869 (30%), Positives = 412/869 (47%), Gaps = 110/869 (12%) Query: 73 KNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ 132 ++ + + +V +E+IQD VE L+++ ++K + Y+LYR + + R Sbjct: 2 DKISLNIENTIKERYPKDHVVTVEEIQDLVELELIENNYYKEVKSYILYRAKHNMDRKVL 61 Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + +S L I+ D ++++R + S + E++ Sbjct: 62 TDFESYIDDDYTLSIIKD--INEEYDNQR------------YPIESLYLKFESFTK--AN 105 Query: 193 LSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 +++ L ALI ++ L KE P++ + ARF++ + ++ + K ++Q L Sbjct: 106 MTKEALLNALIKAASELTSKEAPDWEFIAARFMIHLINLKISLSEEKYEIVDFRSKIQYL 165 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 G+ + ES + DL L LK ER+ F Y GL ++ RY + Sbjct: 166 TS--------VGLYGAYILESYTNKDLEELGAYLKEERNKLFTYSGLDLVAKRYLIKTFE 217 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 G IE Q FM ++M LA+ E ++ A + Y++LS +TPT+ N+ QLSS Sbjct: 218 GEYIESVQEMFMGISMHLAIGEKDRVSFAKKLYDILSQLKATMATPTMTNARKPFNQLSS 277 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TVPD L GI+ ++ A ++K+ GG+G + VR G+ I G + GVI ++K+ Sbjct: 278 CFIDTVPDTLKGIYRSITNFAQVSKHGGGMGLYFGKVRAQGSDIRGIKNVAGGVIRWIKL 337 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 ANDTAVAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A +PDLF Sbjct: 338 ANDTAVAVDQLGVRQGAVACYLDIWHKDMPEFLSLRTNNGDDRMKAHDIFPAVCVPDLFW 397 Query: 491 KRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 K N W +F P EV + D YG+EFE Y + + + R I+ Sbjct: 398 KECRDNIGGDWYMFDPHEVLVKYGKSIEDTYGEEFEEFYHKLVKDKEISK----RVIAIK 453 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------- 596 L R ++ ETG P++ +D N +P +H G+++SSNLCTEI N S E Sbjct: 454 DLIRLLIKSWTETGTPFVFNRDAVNRANPNKHKGIIYSSNLCTEIAQNMSPSETVSEEIK 513 Query: 597 ----------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 CNL S+ L N D ++L + T VR LDNVID+N Sbjct: 514 TVDGETVIVNTTKPGDFVECNLASLTLGNIDVN---DKEELEEVVSTIVRALDNVIDLNY 570 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE-AVEIADESMEFISFHAISASV 699 + AK +N +RAIGLG G+ L I ++ E +E D E I++ AI AS Sbjct: 571 YPTPYAKVTNKKYRAIGLGTSGYHHMLVKNDIKWSEEEAHLEFVDRVYEDINYFAIKASN 630 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 E+A+E+G+YS F+GS WD G + W++LK +V G+R Sbjct: 631 EIAKEKGSYSCFEGSDWDNG--------------NYFKQRGYESQRWEKLKDQVHKNGLR 676 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N +AIAPT + + I G S +DP +++ V L + Sbjct: 677 NGYLLAIAPTGSTSIISGTSAGVDPIMNKYFLEEKKGAIVPRVAP---------GLNTKT 727 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A+ ID + + RQ+ IDQAQS+N+Y+ Sbjct: 728 FW----------------------LYENAYNIDQNISMRACGVRQRHIDQAQSVNVYITT 765 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 E + +++ IY AW G+K+ YY+R +S Sbjct: 766 EYTMRQILNIYLTAWEAGVKSLYYVRGKS 794 >gi|304439120|ref|ZP_07399039.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372479|gb|EFM26066.1| ribonucleotide-diphosphate reductase alpha subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 840 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 271/922 (29%), Positives = 422/922 (45%), Gaps = 126/922 (13%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + + KR+G V FD KIS AI K+++ + I +T++ V ++ Sbjct: 1 MNIRKRDGRVVDFDREKISTAIKKSYIGIMKPFEDS------YIDKITDKIVEKVED-LY 53 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQ---SHSKSDAPIAPKL 145 I +E IQD VE L++ + + Y+ YR S R + D + + Sbjct: 54 KDTIPTVEQIQDLVELELIEEKEIDVVKSYITYRAAHSKDRQVLRGFNEYLEDDTLVSII 113 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + + +D + + + L C +S+ D LI + Sbjct: 114 RDVRNDYSRDLYPIESLFHKFSSFCK-------------------KDMSQDDSRVMLIRA 154 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L KE P++ + +RF L ++ + E E + Sbjct: 155 ASELTTKEAPDWEYIASRFYRYDLELKINENYKGIDT----------FYEKIKNLTEMNL 204 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFFMR 323 + + E+ D+ L ++ ERD Y + +L RY + + +E PQ FM Sbjct: 205 YGKYILENYTKEDIDKLEKEIVPERDKLLTYSSIDLLAKRYLIRSHDMKVLERPQEMFMG 264 Query: 324 VAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM LAL E K + A Y +LS +TPT+ N+ QLSSCF+ TV D L G Sbjct: 265 IAMHLALPEGKNKVEWATRIYTVLSKLQVTVATPTMNNARKPFYQLSSCFIDTVSDTLEG 324 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ ++ A ++K+ GG+G + VR G+ I G G + GVI +L++ NDTAVAV+Q G Sbjct: 325 IYRSIDNFAQVSKHGGGMGLYFGKVRASGSDIRGFKGVAGGVIRWLRLVNDTAVAVDQLG 384 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWT 500 R+G+ YL+ WH D+ EFL +R N GDDR + HD+ A PDLF + N A W Sbjct: 385 VRQGSCAVYLDAWHKDLPEFLQIRTNNGDDRMKAHDIFPAVSYPDLFFRLAKNNIDADWY 444 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +F P E+ L D YG EFE Y A+ + R IS + R ++ L E Sbjct: 445 MFDPHEIMVKKGYCLEDYYGDEFEKKYYECVHDANISK----RVISVKDMVRLIIKSLTE 500 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+ F+D N +P +H G+++SSNLCTEI N S+ E Sbjct: 501 TGTPFAFFRDAVNKMNPNKHKGMIYSSNLCTEIMQNMSAIEAVSQEIETEEGDTVVVTKT 560 Query: 597 ----TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 VCNL S+ + N D +++ + TAVR LDNVID+N + + AK +N Sbjct: 561 KPGDFVVCNLASLVISNI---NLEDDEEVEYVVSTAVRGLDNVIDLNYYPLPYAKITNSK 617 Query: 653 HRAIGLGLMGFQSALHLLHIPY-ASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +RAIGLG G+ AL I + E +E AD E ++++A+ AS E+A+E+GAY F Sbjct: 618 YRAIGLGTSGYHHALIKEGIAFSDEEEHLEFADRVYEKLNYYAVKASNEIAKEKGAYEYF 677 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 KGS WD G + + W++L+ + GMRN MA+APT + Sbjct: 678 KGSDWDNG--------------NYFELRGYHGKEWEDLRASIHEHGMRNGYIMAVAPTGS 723 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + ++DP + +++ V +L R W Sbjct: 724 TSIIAGTTAAVDPVMKRFFLEEKKGAIIPRVAP----DLNTRTFW--------------- 764 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890 ++ A EID +I++ R + IDQ QS+NLY+ + + +++ +Y Sbjct: 765 ------------LYEQAHEIDQSLIIKATGVRGRHIDQGQSVNLYITSDFTMRQILNLYI 812 Query: 891 QAWLMGLKTTYYLRSRSATSVE 912 +A GLK+ YY+RS+S E Sbjct: 813 RAMEEGLKSLYYVRSKSLEVDE 834 >gi|291276994|ref|YP_003516766.1| ribonucleoside-diphosphate reductase subunit alpha [Helicobacter mustelae 12198] gi|290964188|emb|CBG40033.1| ribonucleoside-diphosphate reductase alpha chain [Helicobacter mustelae 12198] Length = 789 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 288/820 (35%), Positives = 424/820 (51%), Gaps = 105/820 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ G + + ++ A L+DVS + ++ D ++ +++ LI Sbjct: 1 MITVVKRSGRIEPLDISKIHKYTSSAVKDLKDVSHSELEVDSKFYFRDNITTEEIQQTLI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I+ + PN+ V AR L L +V Y + + Sbjct: 61 KTAVNKIDMDRPNWTFVAARLFLYDLYHKVSGFTG--------------YRSLREYFEKG 106 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 + +++ FDL +L +K ERD F +LG++ LYDRY L IE+PQ F Sbjct: 107 EQEGKIVKGLKEKFDLDFLNAQIKPERDLQFNFLGVKTLYDRYLLKDRQNKPIELPQHMF 166 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM LA E + A++FY+++S F + +TPTL N+ T QLSSC++ + PD++ Sbjct: 167 MAIAMFLAQNEKDPNAYALQFYDVISKFEVITATPTLANARTPRHQLSSCYIGSTPDNIE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GIF A +E A+L+KY GG+G D++ VRGLG+ I G + GV+PFLK+ ND A+AV+Q Sbjct: 227 GIFDAYKEMALLSKYGGGIGWDFSRVRGLGSFIDGHKNAAGGVVPFLKITNDVAIAVDQL 286 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G RKGA+ YLE WH DV+EF+DLRKN+G++RRRTHD+ A WI DLFMKRV +N WTL Sbjct: 287 GTRKGAIATYLEIWHTDVQEFIDLRKNSGEERRRTHDLFPALWICDLFMKRVEENGLWTL 346 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P + L +LYG+EFE Y +E++ D + I A LW+K+LT FETG P++ Sbjct: 347 FDPYQCGILTELYGEEFEEKYLEFEKRQDI----IKEHIHAKELWKKILTNYFETGMPFL 402 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC--------------------- 600 FKD N +P H G++ SSNLCTEI N+S+ + Sbjct: 403 CFKDNANKANPNPHTGIIRSSNLCTEIFQNTSANHYFIEVEFEDSSKQYFEEQELVLTDA 462 Query: 601 ------------------------------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630 N NL + + + + + A+R Sbjct: 463 GIEKKANKITSLDCIGGKKVYITSRVHKDGNTAVCNLASINLSRIHTKEDIDRIVPIAIR 522 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVI++N + K K +N +RAIGLG+MG L I + S E E D ME I Sbjct: 523 MLDNVIELNFYPNRKVKSTNLANRAIGLGVMGEAEMLATQKIHWGSQEHFEKIDMIMEAI 582 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S++AI AS LA E+G Y F+GS W +G+FPID A + W+ L+ Sbjct: 583 SYNAILASSNLALEKGKYPQFEGSNWSKGIFPIDIANKEACKLVDRGGLFDREYNWNFLR 642 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV L Sbjct: 643 EKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPIYRKKWYEENLSGMIPVVVPNL---- 698 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 N+E P + A+++D +I++A+ RQKW+DQ Sbjct: 699 ----------------------NLETFP-----YYTRAYDLDQKQIIKAAAIRQKWMDQG 731 Query: 871 QSLNLYLD---EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 QS N ++ S K L IY AW +GLK+TYYLRS S Sbjct: 732 QSTNTFIKLDGNASIKSLHEIYTLAWKLGLKSTYYLRSES 771 >gi|242399121|ref|YP_002994545.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM 739] gi|242265514|gb|ACS90196.1| Ribonucleotide reductase alpha subunit [Thermococcus sibiricus MM 739] Length = 897 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 206/936 (22%), Positives = 380/936 (40%), Gaps = 141/936 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD S+I AI +A V +R +++ + + + R+ Sbjct: 5 KVMKRDGRIVPFDESRIRWAIQRAMWEV-------GVRDDNLLDKVVKDVIDRI-NELYE 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + HIE+IQD VE LM++G ++ + Y++Y R ++ Sbjct: 57 GQVPHIENIQDIVELELMRNGLFEVAKAYIIY-------RKKKAEI-------------- 95 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 + N ++ L ++ + + + +SR L Sbjct: 96 REEKRKILNKEK-----------LDEIDKRF----------------SINGLRVLASRYL 128 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 I+ E T + L E++ ++ E YI++ + Sbjct: 129 IKNEEGKIVETPKELFERVAILAAIPDLLYDERMFSKEGT---------YIQDLKRVEYY 179 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 ++ +FD +Y +G L F + E+ + M+V++ Sbjct: 180 LQNFENFDSIY--------------TIGRFKLNKYQFERMVNLYRELAEKGKMKVSIDEF 225 Query: 330 LK------ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 L + E EF+NL+ + FM +TP L NSG LS+CF+ + DD+ I Sbjct: 226 LNMLKNGEFDKYEGVIEEFFNLMVNQVFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A + A++ K GG G +++ +R G + T G + G I F+ + + + + QGG Sbjct: 286 MKAAHDVAIIQKMGGGTGLNFSKIRPEGDLVGTTTGAASGPISFMHLIDAVSNVIKQGGV 345 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA LE WH D+E+F+ ++ G + +++ W F + + + + L Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEQNVGTNILSNFNISVGMW--ADFWEALKEGKKYPLI 403 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P K ++I +L+ ++ M + P + Sbjct: 404 NPRT---------------------------GKKVKEIDPRSLFEELAYMAWAKADPGVV 436 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 F D N R+ + ++N C E L + CNL SINL Sbjct: 437 FFDVINKRNVLVPAKGEKIRATNPCGEEPLY----DYESCNLASINLAKFVKYDDEGKPY 492 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 F++D+ A I + LDN ID+N + + + R IG+G+MG AL L I Y Sbjct: 493 FEWDEYAKVIMKVAKYLDNAIDVNKFPLPEIDYNTKLSRRIGVGIMGLADALFKLGIRYN 552 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E + ++ E+++F+A S+ A+ERG + + + + +G PI+ Sbjct: 553 SKEGYDFMRKATEYLTFYAYKYSIRAAKERGPFPLYHKTEYPEGKLPIEGY--------- 603 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 LPWDEL + ++ G+RN+ PT +++ I S I+P + +Y KS Sbjct: 604 -YHKEIWNLPWDELVEDLRKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVT 662 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G+F V+ ELK+R L+ + ++ + + GS+ +E IP+D++KI TA +I Sbjct: 663 VGEFYYVDPIFEAELKKRGLYTDEILQKISDNYGSVQGLEEIPEDVQKIFVTAMDIHWFD 722 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----S 910 + + + Q W+ + S + + ++ + + + Y A +G K R S + + Sbjct: 723 HLLAQASIQLWLTDSASKTINMPNDATVEDVKAAYLLAHALGCKGVTVYRDGSLSIQVYN 782 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 VE K + K + + Sbjct: 783 VEGEKRKRISAKPSEYAKKILREIVEREPWINKLID 818 >gi|187778604|ref|ZP_02995077.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC 15579] gi|187772229|gb|EDU36031.1| hypothetical protein CLOSPO_02199 [Clostridium sporogenes ATCC 15579] Length = 763 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 255/816 (31%), Positives = 400/816 (49%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI +G ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRNGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + + N+ V AR L L +E + + + Sbjct: 63 TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L E+ D ++ L+ + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKMKLYGEYLIENYSDEEIKELSKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A FY++LS +TPTL N+GT QLS Sbjct: 177 GEVLELPQERFMTIAMHLAIPEGDKKIFYAKGFYDILSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++TV D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGASITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540 M+R+ + W+LF P V + D KEF Y E+ + + Sbjct: 357 MERLEKREQWSLFDPYMVEKIMDYKLEDYFDDVDCKEFTKRYLECEKNINIPR----NTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596 A+ + +K++ ETG P+I F+D NI +P +H G+++SSNLC EI N S E Sbjct: 413 PALDIMKKLMKSAVETGTPFIFFRDTVNIANPNKHKGMIYSSNLCHEIAQNMSESELVEE 472 Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 CNL SINL + + I +R+LDNVI Sbjct: 473 EIIDENGYSEVVQRIKAGDMVTCNLNSINLSKVEK------EDFSKCIPLQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++A+ ++ +RAIGLG G+ L I + S E +++ADE E I++ AI A Sbjct: 527 LNKLPVKEARVTSDKYRAIGLGTSGYHHFLVNNKIRWESDEHIKVADEIYEEIAYTAIKA 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FKGS W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSEKWQQLQSDIKRYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAARQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R++S E Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757 >gi|167045242|gb|ABZ09901.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG9M20] gi|167045330|gb|ABZ09987.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG10D8] Length = 885 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 203/916 (22%), Positives = 361/916 (39%), Gaps = 135/916 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A ++ L++ + +L +H S Sbjct: 14 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELATQLSDAVLAKLTEHGFS 66 Query: 90 -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD VE +L+ GH I + Y+LYR ER +R + + Sbjct: 67 ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKILNTK--------- 117 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 VL K+ D+ + +SR Sbjct: 118 --------------------------------VLDSVGKSF-------DINCLRVLASRY 138 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L + L E++ V + + + + IEE + Sbjct: 139 LFRDNKHEIIEKPSELFERVAILVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 190 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325 L L + +G L +F + +E+ + M+V+ Sbjct: 191 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 235 Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 M + K R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ Sbjct: 236 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQS 295 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I + A++ K GG+G +++ +R G + T+G + G + F+ + N V QGG Sbjct: 296 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 355 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR+GA +E WH D+E+F+ + G +++ W F + + Sbjct: 356 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 411 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + +I+A L + +++ P + Sbjct: 412 LRSPKDNSSA-------------------------GEINAHQLIDLIAQSAWKSAEPGLI 446 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 F D N + G + ++N C E +L CNLGSINL + Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRTADGQYE 502 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ + I R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYN 562 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E + + E ++++++ SV LA+ RG + + + +G P+ + Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 622 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W L ++++ G+RN +APT T++ + S ++P++ ++ K Sbjct: 623 --------YDWGALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G F N LK+ +L+ + +++ + + GS+ + IPD ++ I TA +I Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSD 734 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913 + + + Q WI A + + + ++ + + + Y A MGLK R S V Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794 Query: 914 STLKGVDGKLNAVPVT 929 T + K P Sbjct: 795 MTGENSVKKFEVKPSD 810 >gi|167044788|gb|ABZ09456.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG8D6] Length = 885 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 203/916 (22%), Positives = 361/916 (39%), Gaps = 135/916 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A ++ L++ + +L +H S Sbjct: 14 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELATQLSDAVLAKLTEHGFS 66 Query: 90 -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD VE +L+ GH I + Y+LYR ER +R + + Sbjct: 67 ANNPPSVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEKMKILNTK--------- 117 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 VL K+ D+ + +SR Sbjct: 118 --------------------------------VLDSVGKSF-------DINCLRVLASRY 138 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L + L E++ V + + + + IEE + Sbjct: 139 LFRDNKHEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 190 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325 L L + +G L +F + +E+ + M+V+ Sbjct: 191 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 235 Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 M + K R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ Sbjct: 236 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMQS 295 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I + A++ K GG+G +++ +R G + T+G + G + F+ + N V QGG Sbjct: 296 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 355 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR+GA +E WH D+E+F+ + G +++ W F + + Sbjct: 356 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 411 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + +I+A L + +++ P + Sbjct: 412 LRSPKDNSSA-------------------------GEINAHQLIDLIAQSAWKSAEPGLI 446 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQ 615 F D N + G + ++N C E +L CNLGSINL + Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRTADGQYE 502 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ + I R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDLASKESRRIGLGVMGVADLLYKLRIPYN 562 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E + + E ++++++ SV LA+ RG + + + +G P+ + Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 622 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 W L ++++ G+RN +APT T++ + S ++P++ ++ K Sbjct: 623 --------YDWGALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G F N LK+ +L+ + +++ + + GS+ + IPD ++ I TA +I Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSVKGMPEIPDWIQNIFVTAMDIHWSD 734 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913 + + + Q WI A + + + ++ + + + Y A MGLK R S V Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVTVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794 Query: 914 STLKGVDGKLNAVPVT 929 T + K P Sbjct: 795 MTGENSVKKFEVKPSD 810 >gi|42557734|emb|CAF28708.1| putative ribonucleotide reductase alpha subunit [uncultured crenarchaeote] Length = 906 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 214/918 (23%), Positives = 381/918 (41%), Gaps = 137/918 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH--- 86 Q+ KR+ G+ F+ SKIS AI KA MA + + L+E+ V ++ Q Sbjct: 21 QIRKRDKGLVDFNNSKISNAIYKALMA-------AGKADSKLAERLSEKVVQKMDQQFSI 73 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146 + + +ED+QD VE L++ G + + Y+LYR ER VR + + Sbjct: 74 LDTNRVPSVEDVQDMVESILIEEGLSETAKAYILYRHERRKVRDEKKKILNK-------- 125 Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 L +V D+ + + +S Sbjct: 126 ------------------------KDLDEVDKAF----------------DVNSLRVLAS 145 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 R L+ N L E++ V + ++ +A Sbjct: 146 RYLLRDNNNEIVEDPGLLFERVAILVTIPDILHDSETYSS----------SEVVQNITEA 195 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 ++ + DFDL +G L +F + I++ ++ M+++ Sbjct: 196 EEYYKKLDDFDLKL--------------KIGNHYLNKYHFESLIRHYIDLAKSGHMKISF 241 Query: 327 G------LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 + ++ R VE+YNL+ S F+ +TPTL N+G + QLS+CF+ + DD+ Sbjct: 242 KDLLRHIAEGQLSKYSDRIVEYYNLMVSKDFLPNTPTLMNAGAKLGQLSACFVLDMKDDM 301 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI + + AM+ K GG+G +++ +R G + T+G + G I F+++ + V Q Sbjct: 302 SGIMKSSTDAAMIFKSGGGVGINYSNLRPEGDIVASTSGVASGPISFMRIIDTITDVVKQ 361 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKR+GA +E+WH D+E+F+ + G +++ W N + Sbjct: 362 GGKRRGANMGIMESWHPDIEKFVTAKTKPG--VFENFNVSVGIWSDFWQSIINENNHKYN 419 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +P ++I + L + +++ P Sbjct: 420 LKNPTTQE---------------------------PIKQIDSHQLLDLITFSAWKSAEPG 452 Query: 561 ITFKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----- 613 + F D N +P + G + ++N C E +L CNLGSINL Sbjct: 453 VIFFDNINKYNPCINVKEGPLRATNPCGEQSLYPY----ESCNLGSINLANFVKRSVDGK 508 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 ++FD+ + IR + R LDNVID+N + +E+ + + R IGLG+MG L L IP Sbjct: 509 HEFDWQRYEQAIRLSTRFLDNVIDMNKYPVEEIEHNTKLTRRIGLGIMGIADLLFTLGIP 568 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S E + + E +S++++ SV +A+ R + F + + +G ++ Sbjct: 569 YNSKEGYDFMNRVAEALSYYSMEESVAIAKARDPFPLFNQTDYVEG-------KMIPVAG 621 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 R WD L ++++ G+RNS IAPT T++ I S ++P + ++ K Sbjct: 622 YYEIPKRYHSYDWDSLIEKIEKYGIRNSWTTTIAPTGTLSMIADTSNGVEPVFALVFEKR 681 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G F N N LK+ L+++ +++ + + GS+ + IP+ L+KI TA ++ Sbjct: 682 VTVGRFFYTNRIFENILKENGLYNDEILTKIANNYGSVRGLPEIPEWLQKIFVTAIDVHW 741 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SV 911 + + + QKWI A + + + + + + + Y + MGLK R S V Sbjct: 742 TDHLMAQAVWQKWISNAIAKTINMPSDVTVEDIKAAYLLSHEMGLKGVTVYRDGSRHEQV 801 Query: 912 EKSTLKGVDGKLNAVPVT 929 T + K P + Sbjct: 802 LHITGNDKEKKFIVKPSS 819 >gi|167043944|gb|ABZ08631.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG3J11] Length = 890 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 209/916 (22%), Positives = 367/916 (40%), Gaps = 135/916 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI KAF A + L++ + +L +H S Sbjct: 19 QVRKRDGSVSDFNRDKILNAIYKAFSASNKPDKG-------LAIKLSDGVLVKLTEHGFS 71 Query: 90 -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD VE +L+ GH I + Y+LYR ER +R + +K+ Sbjct: 72 ANNPPSVEAIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEK------------MKV- 118 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 N+K+L+ + + D+ + +SR Sbjct: 119 --------LNTKKLDSVGKSF---------------------------DINCLRVLASRY 143 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L N L E++ V + + + + IEE + Sbjct: 144 LFRDNKNEIIEKPSELFERVAILVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 195 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325 L L + +G L +F + +E+ + M+V+ Sbjct: 196 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 240 Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 M + K R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ G Sbjct: 241 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGG 300 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I + A++ K GG+G +++ +R G + T+G + G + F+ + N V QGG Sbjct: 301 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 360 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR+GA +E WH D+E+F+ + G +++ W F + + Sbjct: 361 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 416 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + +I+A L + +++ P + Sbjct: 417 LRSPKDNSSA-------------------------GEINAHHLIDLIAQSAWKSAEPGLI 451 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615 F D N + G + ++N C E +L CNLGSINL + Sbjct: 452 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRMADGQYE 507 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ + I R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY Sbjct: 508 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 567 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E + + E ++++++ SV LA+ RG + + + +G P+ + Sbjct: 568 SKEGYDFQLKLAEALTYYSMEESVALAKNRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 627 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WD L ++++ G+RN +APT T++ + S ++P++ ++ K Sbjct: 628 --------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 679 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G F N LK+ +L+ + +++ + + GS I IPD ++ I TA +I Sbjct: 680 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSD 739 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913 + + + Q WI A + + + ++ S + + Y A MGLK R S V Sbjct: 740 HLLAQAVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 799 Query: 914 STLKGVDGKLNAVPVT 929 T + + P Sbjct: 800 MTGENSVKRFEVKPSD 815 >gi|167042931|gb|ABZ07646.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_ANIW137N13] Length = 885 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 209/916 (22%), Positives = 366/916 (39%), Gaps = 135/916 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A ++ L++ + +L +H S Sbjct: 14 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELAIKLSDAVLIKLTEHGFS 66 Query: 90 -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD VE +L+ GH I + Y+LYR ER +R + +K++ Sbjct: 67 VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEK------------MKVL 114 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 L V D+ + +SR Sbjct: 115 N--------------------TKRLDSVGKSF----------------DINCLRVLASRY 138 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L N L E++ V + + + + IEE + Sbjct: 139 LFRDNKNEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGM------SQNIEEAAEY-- 190 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325 L L + +G L +F + +E+ + M+V+ Sbjct: 191 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 235 Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 M + K R E+Y L+ S F+ ++PT+ N+G R QLS+CF+ +PDD+ G Sbjct: 236 LLTMLASKKFDAYADRISEYYELMISQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGG 295 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I + A++ K GG+G +++ +R G + T+G + G + F+ + N V QGG Sbjct: 296 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 355 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR+GA +E WH D+E+F+ + G +++ W W + Sbjct: 356 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW-----------KDFWDVL 402 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 E + Y + + +I+A L + +++ P + Sbjct: 403 VNSE------------DGKYTLRSPKDNSSAG----EINAHHLIDLIAQSAWKSAEPGLI 446 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615 F D N + G + ++N C E +L CNLGSINL + Sbjct: 447 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRMADGQYE 502 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ + I R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY Sbjct: 503 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 562 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E + + E ++++++ SV LA+ RG + + + +G P+ + Sbjct: 563 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 622 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WD L ++++ G+RN +APT T++ + S ++P++ ++ K Sbjct: 623 --------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 674 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G F N LK+ +L+ + +++ + + GS I IPD ++ I TA +I Sbjct: 675 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWSD 734 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913 + + + Q WI A + + + ++ S + + Y A MGLK R S V Sbjct: 735 HLLAQAVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 794 Query: 914 STLKGVDGKLNAVPVT 929 T + + P Sbjct: 795 MTGENSVKRFEVKPSD 810 >gi|118576941|ref|YP_876684.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A] gi|118195462|gb|ABK78380.1| ribonucleotide reductase, alpha subunit [Cenarchaeum symbiosum A] Length = 881 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 227/965 (23%), Positives = 397/965 (41%), Gaps = 162/965 (16%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS- 89 + KRNG + +F+ KI+ AI KA A S D+ L V +L+Q S Sbjct: 13 IRKRNGTLDNFNMDKITNAISKALAAT-------SEADHDLASELAHGVVKKLVQQGFSI 65 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 ++ +EDIQD VE +L++SGH +I + Y+LYR ER +R + + + P Sbjct: 66 SIPPSVEDIQDMVESTLIESGHSEIAKAYILYRHERRKIRDEKLRLLNAKALDPV----- 120 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 DL + + +SR L Sbjct: 121 -------------------------------------------AKSFDLNSLRVLASRYL 137 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 + L E++ VL +V + + + +P ++ +AR Sbjct: 138 LRNNKGEITEGPSELFERVA--VLISVGDLLYDSELFDKEGRHP-------QDVGEARGY 188 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG-- 327 + + FD + +G L +F + + + M+V Sbjct: 189 LDKLDSFDCKF--------------KIGNYYLNKYHFRALINHYVTLAGKGQMKVGFKDL 234 Query: 328 ----LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 +A + +R E+Y L++S F+ ++PT+ N+G R QLS+CF+ +PDD+ GI Sbjct: 235 LTQIIAKRHNNYAERISEYYELMASQDFLPNSPTMMNAGGRLGQLSACFVLNMPDDMGGI 294 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + + AM+ K GG+G +++ +R G + T+G + G + F+ + N V QGGK Sbjct: 295 MKSTSDAAMIFKSGGGVGINYSDLRQEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGK 354 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA +E WH DVE+F+ + G +++ W + F + + Sbjct: 355 RRGANMGIIEAWHPDVEKFITNKTEAG--ILENFNVSVGVW--EDFWQALAGPGEGKYML 410 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 K R+ISA L + +++ P + F Sbjct: 411 RSTA--------------------------GKPVREISAHQLIDLIAHSAWKSAEPGLIF 444 Query: 564 KDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQF 616 D N + G + ++N C E +L CNLGSINL +F Sbjct: 445 FDNINKYNVLAKAMGGALRATNPCGEQSLYPY----ESCNLGSINLARLVKRKADGEFEF 500 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ + IR R LDNVID+N + +++ +++ R IGLG+MG L+ L IPY S Sbjct: 501 DWQRYEEMIRKTTRFLDNVIDVNLYPVKEIDRASKESRRIGLGVMGVADLLYKLRIPYNS 560 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 E ++ + E ++++++ SV LA+ RG + + + +G P+ LA Sbjct: 561 KEGYDLQSKLAEALTYYSMEESVALAKSRGEFPLCPQTEYPEGKIPVAGYYELA------ 614 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 WD L ++K G+RN+ +APT T++ + S ++PS+ ++ K Sbjct: 615 --RDEHTYDWDALIDKIKRHGIRNALTTTVAPTGTLSMLADCSNGMEPSFALVFEKRVTV 672 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G F N + LK+ L+++ +++ + + GS+ +E IP+ ++KI TA +I Sbjct: 673 GKFFYTNKIIAQILKEHGLYNDDLLARISENYGSLRGLEEIPEWMQKIFVTAMDIHWSDH 732 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS----- 910 + S Q+WI A + + + ++ + + Y A +GLK T R S Sbjct: 733 LMVQSVWQEWIGNAIAKTINMPNDVTADDVKASYLLAHELGLKGTTVYRDGSRHKQVLHM 792 Query: 911 --------------------VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE- 949 VEK + V ++NA + P ++ + + T E Sbjct: 793 ASENSEKTFDVYPSLYISEYVEKIQDRYVRTEVNAALSSGPTEEAPTVDLNITETVPEED 852 Query: 950 -CEVC 953 C C Sbjct: 853 LCPTC 857 >gi|167044534|gb|ABZ09208.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine crenarchaeote HF4000_APKG6N3] Length = 890 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 207/916 (22%), Positives = 364/916 (39%), Gaps = 135/916 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV KR+G V+ F+ KI AI +AF A ++ L++ + +L +H S Sbjct: 19 QVRKRDGSVSDFNRDKILNAIYRAFSASNKPDK-------ELAIKLSDAVLIKLTEHGFS 71 Query: 90 -ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 +E IQD VE +L+ GH I + Y+LYR ER +R + +K++ Sbjct: 72 VNNPPGVESIQDLVESTLIDQGHSDIAKSYILYRHERRKIREEK------------MKVL 119 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 L V D+ + +SR Sbjct: 120 N--------------------AKRLDSVGKSF----------------DINCLRVLASRY 143 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L N L E++ V + + + + +EE + Sbjct: 144 LFRDNKNEIIEKPSELFERVAVLVSISDLIRDNYLFTKDGGM------SQNVEEAAEY-- 195 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA--- 325 L L + +G L +F + +E+ + M+V+ Sbjct: 196 ---------LKKLDGFSYKFK------IGSYYLNKWHFRCLINCYVELAKQGMMKVSFKE 240 Query: 326 ---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 M + K R E+Y L++S F+ ++PT+ N+G R QLS+CF+ +PDD+ G Sbjct: 241 LLTMLASKKFDAYADRISEYYELMTSQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMGG 300 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I + A++ K GG+G +++ +R G + T+G + G + F+ + N V QGG Sbjct: 301 IMKTTSDAALIFKSGGGVGINYSDLRDEGEIVASTSGVASGPVSFMNIINTVTEVVKQGG 360 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR+GA +E WH D+E+F+ + G +++ W F + + Sbjct: 361 KRRGANMGIMEVWHPDIEKFITNKTEPG--VLENFNVSVGVW--KDFWDVLVNSGDGKYT 416 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + +I+A L + +++ P + Sbjct: 417 LRSPKDNSSA-------------------------GEINAHHLIDLIAQSAWKSAEPGLI 451 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----Q 615 F D N + G + ++N C E +L CNLGSINL + Sbjct: 452 FFDNINKYNVFAKARGGPLRATNPCGEQSLYPY----ESCNLGSINLANLVKRMADGQYE 507 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ + I R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY Sbjct: 508 FDWQRYEEIIIKTTRYLDNIIDVNLYPVPEIDVASKESRRIGLGVMGVADLLYKLRIPYN 567 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E + + E ++++++ SV LA+ RG + + + +G P+ + Sbjct: 568 SKEGYDFQLKLAEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVSGYYEKPKEEQY 627 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 WD L ++++ G+RN +APT T++ + S ++P++ ++ K Sbjct: 628 --------YDWDALIEKIQKYGIRNVLTTTVAPTGTLSMLADCSNGMEPNFALVFEKRVT 679 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G F N LK+ +L+ + +++ + + GS I IPD ++ I TA +I Sbjct: 680 VGRFFYTNKIFEQVLKENNLYSDELLAKVADNYGSAKGIPEIPDWIQNIFVTAMDIHWTD 739 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913 + + S Q WI A + + + ++ S + + Y A MGLK R S V Sbjct: 740 HLLAQSVWQDWISNAIAKTINMPNDVSVEDVKASYLLAHEMGLKGITVYRDGSRHKQVLH 799 Query: 914 STLKGVDGKLNAVPVT 929 T + + P Sbjct: 800 MTGENSVKRFEVKPSD 815 >gi|315425463|dbj|BAJ47126.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus Caldiarchaeum subterraneum] Length = 834 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 216/925 (23%), Positives = 378/925 (40%), Gaps = 128/925 (13%) Query: 40 SFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQ 99 FD +I AI KA A++ + + +++ + + +L + I H+E+IQ Sbjct: 2 DFDAERIRGAIRKAM-------AAKQVMDEKVLEKVVASVLEQLSSRFGAEKIPHVEEIQ 54 Query: 100 DQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNS 159 D VE +LM+ G ++ + Y+LYR ER+ +R + + K +F+ Sbjct: 55 DIVESALMEHGLKEVAKAYILYRHERTRIREEKMRILETGYVDEVDK---------AFSV 105 Query: 160 KRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKV 219 L + A L+D S +++ E K M+ Sbjct: 106 NAL--RLMAARYLLRDRSGRLI--ERPKQMFQR-------------------------TA 136 Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 L + L + + +K +++ E + I G + L Sbjct: 137 ALIVLADILYNPMFFDKSGQQKKWEEDDVKL---EEYADNIGVGPSDNMHETKWNIHHLE 193 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 LA K G+ +E L + + Sbjct: 194 RLATLYKR-----LNERGM-------MRKPLREVLE-----------YLKSNPSRFYENY 230 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 +Y+L+ F+ ++PTLFN+GT QLS+CF+ V DD+ I +E A++ K GG Sbjct: 231 RRYYDLMVGKRFLPNSPTLFNAGTVLGQLSACFVLDVEDDISSIMRTAEEAAVIFKTGGG 290 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G +++ +R G + T G + G + F+++ + V QGG+R+GA L H D+ Sbjct: 291 VGINYSKLRPEGDVVSSTGGVASGPVSFMRIVDTVTDVVKQGGRRRGANIGILNINHPDI 350 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 ++F+ ++ G + N + + F K ++ + L +P + Sbjct: 351 DKFISAKQRPGFLE----NFNISVMVTADFWKHYEEDRPYPLVNPRD------------- 393 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-GV 578 V+R + L R++ ++T P + + D N +P + G Sbjct: 394 --------------GSVWRLVDTRKLLRQIAENAWKTADPGLLYHDNINELNPLREAYGD 439 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 ++ N C E L CNLGSINL A + + D+D L + AVR LDNV+D+ Sbjct: 440 IYCVNPCGEQPLYPH----ESCNLGSINLHAFVKDGRLDWDALGKCVEDAVRFLDNVVDL 495 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 H E +K R IGLG+MG L+ L IPY+S E E+ ME+I++ A+ S Sbjct: 496 TKHPTEAIEKMTLRTRRIGLGIMGLADMLYALRIPYSSEEGFEMMRRVMEYIAYKAVETS 555 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 VELA+ERG + F S W +G P + E++ W L + VK G+ Sbjct: 556 VELAEERGPFPDFPRSSWARGELPFRGLREGRELKMY----------WSRLVEHVKK-GI 604 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS+ + +APT +I+ + S ++P + +Y K +G F + L++ L + Sbjct: 605 RNSHLLTVAPTGSISMLADTSSGLEPQFALVYRKQVTAGVFYYSDPVFEKALEEYGLPKQ 664 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ + + GS+ I+ IP+DL+++ TA +I + + QKW+D + S + + Sbjct: 665 EIVRRVAENGGSVQGIQEIPEDLRRVFVTALDIPWWDHLRAQHEIQKWVDASVSKTINMP 724 Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST---------LKGVDGKLNAVPV 928 + + + A +GLK R S ++ T L ++ + Sbjct: 725 SWVTVDDVLKAFIAAHRLGLKGVTVYRDGSKSAQVLVTPTQRNRRYELSVINNTPELLRG 784 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVC 953 P T C VC Sbjct: 785 LGIEVEEKIAETPPPAIIHTTCPVC 809 >gi|170758616|ref|YP_001788132.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum A3 str. Loch Maree] gi|169405605|gb|ACA54016.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A3 str. Loch Maree] Length = 763 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 253/816 (31%), Positives = 397/816 (48%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ I + N+ V AR L L +E + + + Sbjct: 63 TAIEKIIQNGKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKTKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A +FY+LLS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTTFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540 MKR+ + W+LF P V + +EF Y ER + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR----DTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEE 472 Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + CNL SINL ++ + I +R+LDNVI Sbjct: 473 KIIDDNGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI + Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FK S W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R++S E Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757 >gi|168179223|ref|ZP_02613887.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum NCTC 2916] gi|182669564|gb|EDT81540.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum NCTC 2916] Length = 763 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 254/816 (31%), Positives = 399/816 (48%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG S ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + + N+ V AR L L +E + + + Sbjct: 63 TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A +FY+LLS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540 MKR+ + W+LF P V + +EF Y ER + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR----DTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEE 472 Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + CNL SINL ++ + I +R+LDNVI Sbjct: 473 EIIDENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI + Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTAIKS 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FKGS W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R++S E Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757 >gi|226950224|ref|YP_002805315.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A2 str. Kyoto] gi|226843054|gb|ACO85720.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A2 str. Kyoto] Length = 763 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 253/816 (31%), Positives = 398/816 (48%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG S ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + + N+ V AR L L +E + + + Sbjct: 63 TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K +FY+LLS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYGKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540 MKR+ + W+LF P V + +EF Y ER + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR----DTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHRGMIYSSNLCHEIAQNMSESQLLEE 472 Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + CNL SINL ++ + I +R+LDNVI Sbjct: 473 EIIDENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI + Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYTAIKS 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FKGS W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R++S E Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757 >gi|153939013|ref|YP_001392092.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum F str. Langeland] gi|152934909|gb|ABS40407.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum F str. Langeland] Length = 763 Score = 499 bits (1284), Expect = e-138, Method: Composition-based stats. Identities = 252/816 (30%), Positives = 396/816 (48%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + + N+ V AR L L +E + + + Sbjct: 63 TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A +FY+LLS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540 MKR+ + W+LF P V + +EF Y ER + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR----DTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEE 472 Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + CNL SINL ++ I +R+LDNVI Sbjct: 473 EIIDGNGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI + Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FK S W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R++S E Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757 >gi|170754701|ref|YP_001782420.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum B1 str. Okra] gi|169119913|gb|ACA43749.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum B1 str. Okra] Length = 763 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 251/816 (30%), Positives = 396/816 (48%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + + N+ V AR L L +E + + + Sbjct: 63 TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A +FY++LS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDILSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540 MKR+ + W+LF P V + +EF Y ER + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRREFTNKYLECERNTNIPR----DTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEE 472 Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + CNL SINL ++ I +R+LDNVI Sbjct: 473 EIIDGNGYSEIVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI + Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FK S W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R++S E Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757 >gi|322807125|emb|CBZ04699.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit [Clostridium botulinum H04402 065] Length = 763 Score = 498 bits (1283), Expect = e-138, Method: Composition-based stats. Identities = 253/816 (31%), Positives = 396/816 (48%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELEVDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ I + N+ V AR L L +E + + + Sbjct: 63 TAIEKIIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A +FY+LLS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRKI 540 MKR+ + W+LF P V + +EF Y ER + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDLREFTNKYLECERNTNIPR----DTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEE 472 Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + CNL SINL ++ I +R+LDNVI Sbjct: 473 EIIDGNGYSEIVQRIKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI + Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKS 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FK S W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R++S E Sbjct: 722 TPEIKAKEILNMYMESWKQGVKTIYYVRNKSLEMDE 757 >gi|148380774|ref|YP_001255315.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium botulinum A str. ATCC 3502] gi|153930834|ref|YP_001385058.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum A str. ATCC 19397] gi|148290258|emb|CAL84377.1| ribonucleoside-diphosphate reductase 2 alpha chain [Clostridium botulinum A str. ATCC 3502] gi|152926878|gb|ABS32378.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum A str. ATCC 19397] Length = 763 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 251/812 (30%), Positives = 397/812 (48%), Gaps = 101/812 (12%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + + N+ V AR L L +E + + + Sbjct: 63 TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y + + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYQLVKKLVKIKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGNN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A +FY+LLS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 MKR+ + W+LF P V L D + E + N + +R + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDRKEFTNKYLECERNTNIPRDTVPTLD 416 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595 + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 417 IMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESRLLEEEIID 476 Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 + CNL SINL ++ I +R+LDNVI +N Sbjct: 477 GNGYSEIVQRVKAGDMVTCNLNSINLSKVKK------EEFNECIPFQIRMLDNVISLNKL 530 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI +S+EL Sbjct: 531 PVKEAKVTSDKYRAIGLGTSGYHHFLANNKIRWESDEHIKVADEIYEEIAYIAIKSSMEL 590 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G+Y +FK S W+ G + W +L+ +K GMRN Sbjct: 591 AKEKGSYPAFKDSEWETGK--------------YFERRGYNSERWKKLQSNIKKYGMRNG 636 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 637 YITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW----- 687 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + A ID W I++ + RQK IDQAQS NLY+ E Sbjct: 688 ----------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYITPEI 725 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 K++ +Y ++W G+KT YY+R++S E Sbjct: 726 KAKEILNMYIESWKQGVKTIYYVRNKSLEMDE 757 >gi|168184458|ref|ZP_02619122.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum Bf] gi|237796250|ref|YP_002863802.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum Ba4 str. 657] gi|182672445|gb|EDT84406.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum Bf] gi|229261891|gb|ACQ52924.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum Ba4 str. 657] Length = 763 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 255/816 (31%), Positives = 399/816 (48%), Gaps = 109/816 (13%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +KI DG S ++ + +V+ AC G++ + ++ DG++ +++ LI Sbjct: 3 IKIKKRDGQYESLQVEKTKKMVKLACEGIEGCDPLELELDSRIQFRDGMTTKEIQRTLIQ 62 Query: 205 SSRTLIEKE-------------PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + + N+ V AR L L +E + + + Sbjct: 63 TAIEKVIQNSKDNNGNNIKKTNANWQYVAARLLCFDLYKEAKISRH------YNSFGYGD 116 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 Y E + ++ + L ++ D ++ LA + ERD F Y GL++L DRY + N Sbjct: 117 YYELVKKLVKMKLYGEYLIQNYSDEEIKELAKYIVPERDELFNYEGLKLLNDRYLIKGHN 176 Query: 311 GSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 G +E+PQ FM +AM LA+ E +K A +FY+LLS +TPTL N+GT QLS Sbjct: 177 GEILELPQERFMTIAMHLAIPEGDKKVFYAKKFYDLLSELKVTVATPTLGNAGTPFYQLS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GV+P+++ Sbjct: 237 SCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGHKNASGGVVPWIR 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ + IPDLF Sbjct: 297 LYNDTAVAVDQLGKRKGGAAITLDIWHKDIFDFLDLKTNNGDDRRKAHDIFPSVSIPDLF 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYG---------KEFEIAYENYERQADRGEIKVFRKI 540 MKR+ + W+LF P V + +EF Y ER + + Sbjct: 357 MKRLEKRESWSLFDPYIVEKIMGYKLEDYFDDEDCREFTNKYLECERNTNIPR----DTV 412 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 413 PTLDIMKKLMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESQLLEE 472 Query: 596 ------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + CNL SINL ++ + I +R+LDNVI Sbjct: 473 EIIDENGYPEVVQRVKAGDMVTCNLNSINLSKVKK------EEFSECIPLQIRMLDNVIS 526 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +++AK ++ +RAIGLG G+ L I + S E +++ADE E I++ AI + Sbjct: 527 LNKLPVKEAKVTSDKYRAIGLGTSGYHHFLANNKISWESDEHIKVADEIYEEIAYIAIES 586 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ELA+E+G+Y +FKGS W+ G + W +L+ +K G Sbjct: 587 SMELAKEKGSYPAFKGSEWETGK--------------YFERRGYNSERWKKLQSNIKKYG 632 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN AIAPT + +NI + IDP ++ +++ G FT +L + + W Sbjct: 633 MRNGYITAIAPTGSTSNIANTTAGIDPVFKKFFMEE-KKGSFT---PKTAPDLNEENFW- 687 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + A ID W I++ + RQK IDQAQS NLY+ Sbjct: 688 --------------------------YYKEAHTIDQQWSIKACAVRQKHIDQAQSFNLYI 721 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 E K++ +Y ++W G+KT YY+R+RS E Sbjct: 722 TPEIKAKEILNMYMESWRQGVKTIYYVRNRSLEMDE 757 >gi|118442856|ref|YP_878439.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium novyi NT] gi|118133312|gb|ABK60356.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium novyi NT] Length = 764 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 251/821 (30%), Positives = 394/821 (47%), Gaps = 110/821 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K+ +G ++ + +V AC GL + ++ +G+S +++ LI Sbjct: 2 DIKVRKRNGEYEKLCVEKTKKMVSLACEGLDGCDPLELEIDSRIQFRNGMSTKEIQKILI 61 Query: 204 FSSRTLI--------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 ++ + + N+ V AR L L +E K + H Sbjct: 62 QTAIEKVIYIDKNNYDNSPSKKTNINWQYVAARLLAFDLYKEA------KINRNYSHFGY 115 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 + + + G+ + L E+ D ++ L+ ++ +RD F Y GL++L DRY + Sbjct: 116 GDFLSLVKKLVNMGLYGKYLIENYSDEEIKELSEYIEPKRDELFNYEGLKLLNDRYLIKG 175 Query: 309 INGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 NG +E+PQ FM +AM LA+ E + A +FY+L+S +TPTL N+GT Q Sbjct: 176 FNGEILELPQERFMVIAMHLAIPEGKNRVYFAKKFYDLMSKLKMTVATPTLGNAGTPFYQ 235 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF++ V D+L+ I+ Q+ A ++K+ G LG +R L + I G S GVIP+ Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFAQVSKHGGALGIYMGKIRALNSEIRGHKNASGGVIPW 295 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ T+ IPD Sbjct: 296 IKLYNDTAVAVDQLGKRKGGASITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSIPD 355 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFR 538 +FMKR+ W+LF P + L KEF Y E E Sbjct: 356 IFMKRLLNRENWSLFDPYTIQKLMGYKLEDYFDDEENKEFTKRYLECEA----NENLPRD 411 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-- 596 +S + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S E Sbjct: 412 TVSCLDVMKKIMKSAVETGAPFIFFRDTVNRANPNKHKGMIYSSNLCHEIAQNMSESELI 471 Query: 597 ---------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 CNL SINL D+L +I +R+LDNV Sbjct: 472 SEEVTDKNGFNEVVSRIKSGDMVTCNLNSINLSKVSR------DELKESIPLQIRMLDNV 525 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I +N ++++ ++ +RAIGLG G+ L I + S E ++ D E I++ AI Sbjct: 526 ISLNRLPVKESAITSDKYRAIGLGTSGYHQYLASNKIKWESEEHIKEVDSLFEDIAYEAI 585 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS+ELA+E+GAY+ F+GS W G + W++L++ + Sbjct: 586 KASMELAKEKGAYAEFEGSEWQSGK--------------YFERRGYNSERWNKLREDIAK 631 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RN MA+APT + +NI + IDP ++ +++ G FT +L + Sbjct: 632 YGIRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEE-KKGSFT---PKTAPDLNNENF 687 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W + A I+ W I++ + RQK IDQ+QS NL Sbjct: 688 W---------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNL 720 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 Y+ E K + +Y ++W G+KT YY+R++S E S+ Sbjct: 721 YITPEVKAKDILNMYTESWRQGIKTIYYVRNKSIEMDECSS 761 >gi|229827461|ref|ZP_04453530.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC 49176] gi|229788399|gb|EEP24513.1| hypothetical protein GCWU000182_02850 [Abiotrophia defectiva ATCC 49176] Length = 763 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 258/817 (31%), Positives = 389/817 (47%), Gaps = 109/817 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I +G + ++ + +V AC GL + ++ +G+S +++ LI Sbjct: 2 DILIKKRNGRYENLCVEKTKKMVALACEGLDGCDPMELEMDSKIQFKNGMSTKEIQQVLI 61 Query: 204 FSSRT-------------LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 S+ L + V AR L L +E K + Sbjct: 62 RSAIEKVIVNEQSENGSGLSRMNSKWQHVAARLFLFDLYKEA------KISRNYKTFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 + + +E G+ + + LA +K ERDF F Y G+++L DRY +H + Sbjct: 116 DFKKLIEMLVERGIYTEDFITKYTEAERRELAEYIKPERDFLFNYEGVKLLADRYLVHGV 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 NG +E+PQ FM +AM LA E +K A FY+LLS +TPTL N+GT QLS Sbjct: 176 NGEVMELPQERFMAIAMHLASVEEDKVYYAKAFYDLLSKLKMTVATPTLANAGTTFNQLS 235 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCF++TV D+L+ I+ + + ++K+ G LG VR LG+ I G N S GVIP+++ Sbjct: 236 SCFISTVSDNLWSIYDVNSKFSKVSKHGGALGIYLGKVRSLGSDIRGYNNASGGVIPWVR 295 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + NDTAVAV+Q G+RKG L+ WH D+ EF+DLR N GDDRR+ HD+ A IPD+F Sbjct: 296 LYNDTAVAVDQLGRRKGGASITLDIWHKDLYEFIDLRTNNGDDRRKAHDIFPAISIPDIF 355 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFRK 539 M+R+ ++LF P EV L KEF Y+ E +I Sbjct: 356 MERLINRQEFSLFDPHEVEKLMGFSLEDYYDKDEKHKEFSERYKLCENDNRLTKI----T 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---- 595 + A+ + +K++ ETG P+I F+D N +P H G+++ SNLC EI N S Sbjct: 412 VPALDIMKKIMKSAVETGTPFIFFRDTVNRANPNSHAGMIYGSNLCHEIAQNMSETKYVS 471 Query: 596 -------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + CNL S+NL ++L + +R+LDNVI Sbjct: 472 EEIITENGETKIVTTVKSGDMVTCNLNSVNLGNVT------LEELKENVPLQIRMLDNVI 525 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 +N + AK ++ +RAIGLG+ G+ L I + + + +E AD E I+++AI Sbjct: 526 TLNMFPVADAKVTSLKYRAIGLGVSGYHHYLAKNAIAWENEKHIEEADRLFEEIAYNAIK 585 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ELA+E+GAY+ F+GS W G + W ELKK V Sbjct: 586 ASMELAKEKGAYAEFEGSKWQTG--------------EYFDERGYVSERWQELKKDVMKY 631 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RN MA+APT + +NI G + IDP ++ +V+ G FT Sbjct: 632 GLRNGYLMAVAPTGSTSNIAGTTAGIDPIFKKFFVEE-KKGSFTPK-------------- 676 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + D+ + A I+ +W I + + RQ+ IDQAQS NLY Sbjct: 677 ----------------TAPELNDETFWYYKEAHYINQLWSIRACAARQRHIDQAQSFNLY 720 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + E K + +Y +A+ G+KT YY+R+RS E Sbjct: 721 ITPEVKAKDILDMYVEAYKAGIKTIYYVRNRSLEMDE 757 >gi|227498393|ref|ZP_03928543.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] gi|226903855|gb|EEH89773.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] Length = 760 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 246/814 (30%), Positives = 382/814 (46%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I DG + ++ + ++ AC GL + ++ DG++ ++ LI Sbjct: 2 DIMIRKRDGHFEPLSVEKTKRMIAFACLGLDSCDPMELEMDSKLQFVDGMTTKQIQQTLI 61 Query: 204 FSSRT-------------LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ L E P++ V AR L L +E Q+ Sbjct: 62 RTAIEKVIPSRHEGGGVPLQEMNPDWQFVAARLFLFDLYKEA------AIQRRYKAFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 + +++ A + +L L + +K +RD+ F Y GL++L DRY + Sbjct: 116 NFSNLIHMLVDKKKYADFFVTDYTEDELQELGDYIKPKRDYLFNYEGLKLLADRYLVRGF 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K A +FY+L+S +TPTL N+GT QL Sbjct: 176 NKEVYELPQERFMAIAMHLALVEGKNKVAYAKKFYDLMSELKMTTATPTLANAGTPFHQL 235 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF+ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 236 SSCFVAGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWV 295 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q G+RKG L+ WH D EF++LR N GDDRR+ HD+ + +P+L Sbjct: 296 RLYNDTAVAVDQLGRRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPSISVPNL 355 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ + +TLF P EV+ + K F Y E+ + I Sbjct: 356 FMERLIKRENFTLFDPHEVNTVMGFALEDFYDTEEDKAFTEHYLACEKDSRLHGI----S 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 412 VPALEMMKKIMKSAVETGTPFIFFRDTVNEANPNKHAGMIYASNLCHEIAQNVGFTNLKK 471 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 ++ + CNL SINL D D L I VR+LDNVI IN Sbjct: 472 EILEDDGTITTVTAPGDMVTCNLNSINLGKI------DEDFLEEQIALQVRMLDNVITIN 525 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ + +RAIGLG G+ L + + S E + AD E I+++AI AS+ Sbjct: 526 QTPVPESRLTCDKYRAIGLGTSGYHHYLVKHGLRWESKEHIAAADALFEKIAYYAIKASM 585 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 EL++E+GAY +FKGS WD G + W L V GMR Sbjct: 586 ELSKEKGAYPAFKGSEWDTGK--------------YFTRRGYTSEKWQRLAADVHKYGMR 631 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N +A+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 632 NGYLLAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KQGSFT---PKTAPDLNPKTFW--- 684 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I + + RQ+ IDQAQS NLY+ Sbjct: 685 ------------------------LYKEAHTIDQQWSIRANAARQRHIDQAQSFNLYITP 720 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 ++ +Y +A+ G+KT YY+R++S E Sbjct: 721 RMKASEILNLYIEAYKQGIKTIYYVRNQSLEMDE 754 >gi|170289761|ref|YP_001736577.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Korarchaeum cryptofilum OPF8] gi|170173841|gb|ACB06894.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Korarchaeum cryptofilum OPF8] Length = 876 Score = 495 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 226/964 (23%), Positives = 392/964 (40%), Gaps = 149/964 (15%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 ++ +V+KR+G V FD +I RAI A V G + ++K + + + Sbjct: 1 MRVTKVVKRDGRVVEFDSFRIRRAIEMAMREV---GKFDEAILDKVVKYVLDVIDSTFSD 57 Query: 86 HNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 H+E+IQD VE +LM+ ++ + Y++YR+ER +R + + Sbjct: 58 ERP----PHVEEIQDIVELALMKYDLFEVAKAYIVYRKEREKIRKEKMAILGKDYVDD-- 111 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + L + +++ S + DG Sbjct: 112 -VDKR----------------------LSLNAVRLLASRYLQKGPDG------------- 135 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 R L + + + ++ + ++ + + L + Q+ E + G Sbjct: 136 -RFLEDPKGLFIRIASLVVIPDILYDPLIFDKEGEQEVHPTEYFNPEEWAGKVGLGGGDP 194 Query: 266 ARLLHE--SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 L L + G R+ Q F M Sbjct: 195 ENHLAPPFVWNAHHLERMKALYD-----ELNSQG-------------KMRVSWSQFFDML 236 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 + K +E+Y L+ F+ ++PTLFN+GT QLS+CF+ + D L I Sbjct: 237 ----RDGRFDHHYKDFLEYYRLMVDLKFIPNSPTLFNAGTMLGQLSACFVLPIEDSLESI 292 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + E AM+ K GG+G +++ +R G + T G++ G + F+++ + V QGG+ Sbjct: 293 MRSATEAAMIFKSGGGVGINYSKLRPQGDIVRSTGGQASGPVSFMRIIDVITDVVKQGGR 352 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA LE WH D+ +F++ + G+ + N + I + F K + + L + Sbjct: 353 RRGANMGILEIWHPDIMKFIEAKAKPGNLE----NFNLSVMITEDFWKYYEEGKDYPLIN 408 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P +V+ I +RK+ M + TG P + F Sbjct: 409 PR---------------------------NGEVWGSIDPREAFRKIAEMAWRTGDPGVLF 441 Query: 564 KDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDY 618 D N R+ + H+G + S+N C E L CNLGS+NL A+ FD+ Sbjct: 442 ADNINRRNILREHLGEIKSTNPCGEEPLYPY----ESCNLGSMNLYAYIRRENGLVTFDW 497 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 D+ + IR A+R LDN+ID+N I + +K+ R +GLGLMG L L IPY S E Sbjct: 498 DEYSRDIRKALRFLDNIIDVNKFPIPEIEKTTKRTRKVGLGLMGLADTLFALRIPYNSEE 557 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 + E++++ A+ SVE A+ERG++ F S + +G P++ Sbjct: 558 GFNFMRRAAEYLTYFAMLESVERAKERGSFPLFPESGYVRGEMPVE----------GFYH 607 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 L WD L++++ G+RN+ IAPT +I+ I VS I+P + ++ K G Sbjct: 608 PEIWNLDWDYLREQIMRNGIRNAEVTTIAPTGSISMIAEVSSGIEPQFALVFEKRVTVGS 667 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI------ERIPDDLKKIHATAFEID 852 F V++ +LK+ L+ E ++ D+ + GS+ I E + + +K+I A++I Sbjct: 668 FFYVDAEFERQLKENGLYSEKILRDIAENGGSLYGIEAPEGKEDVIERMKRIFLVAYDIP 727 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS---- 907 I + + +WI A S + + S ++ Y A +GLK R S Sbjct: 728 WWDHIRAEAEISRWICAAVSKTINMPNWVSVSDIEKAYLFAHRLGLKGITVYRDGSKSAQ 787 Query: 908 ------------ATSVEKSTLKGVD------GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 A+ +E TLK ++ +L V + + P+ Sbjct: 788 VLITPTQRRGEYASFIENETLKMMESLGIELPQLRKAKVEEKTQAQPVFKPPAQPNHVET 847 Query: 950 CEVC 953 C C Sbjct: 848 CPEC 851 >gi|329766042|ref|ZP_08257603.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137497|gb|EGG41772.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Nitrosoarchaeum limnia SFB1] Length = 882 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 205/911 (22%), Positives = 379/911 (41%), Gaps = 125/911 (13%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-NK 88 ++ KR+G VT+F+ +KIS AI KA A S + + +L + V +L++ Sbjct: 12 EIRKRSGAVTAFNQNKISNAIFKALAAT-------SKADRVLADHLANKVVQKLVEQGFT 64 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 ++ +EDIQD VE +L+ SG+ I + Y++YR ER +R + +K++ Sbjct: 65 NSRAPSVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLRDEK------------MKVL 112 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 L VS + DL + +SR Sbjct: 113 N--------------------AKSLDSVSKEF----------------DLNCLRVLASRY 136 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L N + + E++ +L + A + + +AR Sbjct: 137 LFRNNKNEIIESPTQMFERVA--ILVGIGDILYDAQVFDKSG-------NISQSTDEARS 187 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-MPQAFFMRVAMG 327 E + +FD + D+ + L + Y + +++ + +A Sbjct: 188 YLEKLDNFDYKFKIG------DYFLNKWHFRSLINHYVTLASKGQMKVSFKDLLTLIAA- 240 Query: 328 LALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 K + E+++L+++ F+ ++PT+ N+G R QLS+CF+ +PDD+ I + Sbjct: 241 --KKFDSYADKITEYFDLMTAQDFLPNSPTMMNAGGRLGQLSACFVLGMPDDMEKIMKST 298 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + A++ K GG+G +++ +R G + T+G + G + F+ + N V QGGKR+GA Sbjct: 299 SDAALIFKSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGGKRRGA 358 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 +E WH DVE+F+ + G +++ W + F + Sbjct: 359 NMGIIEAWHPDVEKFITNKTEPG--VLENFNVSVGIW--EDFWNALVNTEDGKYMLRS-- 412 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 + K ++I+A L + +++ P + F D Sbjct: 413 -----------------------PRDRKPVKEINAHQLIDLIALSAWKSAEPGLIFFDQI 449 Query: 568 NIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDK 620 N + + ++N C E +L CNLGSINL+ +FD+ + Sbjct: 450 NKYNVFAKARQAPLRATNPCGEQSLYPY----ESCNLGSINLVNLVKRQADGEYEFDWQR 505 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TIR R LDN+ID+N + +++ ++ R IGLG+MG L+ L IPY S E Sbjct: 506 YEETIRKTTRFLDNIIDVNHYPVKEIDIASKDSRRIGLGVMGVADLLYKLKIPYNSKEGY 565 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E+ + E ++++++ SV LA+ RG + + + +G PI + Sbjct: 566 ELQSKLSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPIAGYYEKPKE-------- 617 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + WD L +++K G+RN +APT T++ I S ++P++ ++ K G F Sbjct: 618 SHCYEWDALIEKIKKHGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVTVGRFF 677 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 N + LK+ L+ + +++ + + GS+ I IP ++ ++ TA +I + + Sbjct: 678 YTNKIVEEVLKEHGLYSDELLAKIADNYGSLKGIPEIPQWMQDVYVTAMDIHWADHLMAQ 737 Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKG 918 Q WI A + + + + + + + Y A +GLK R S V T + Sbjct: 738 GVWQDWIGNAIAKTINMPYDVTAEDVKSAYLLAHELGLKGITVYRDGSRHKQVLHMTSEN 797 Query: 919 VDGKLNAVPVT 929 P Sbjct: 798 AQKSFEVRPSE 808 >gi|225847949|ref|YP_002728112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfurihydrogenibium azorense Az-Fu1] gi|225643612|gb|ACN98662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfurihydrogenibium azorense Az-Fu1] Length = 846 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 225/946 (23%), Positives = 392/946 (41%), Gaps = 148/946 (15%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++IKR+G V FD SKI+ AI KA AV K S S ++L ++ V +L S Sbjct: 4 KIIKRDGRVVDFDISKIANAIWKAMQAVGEKDKSLS-------ESLAKKVVEKLESKLSS 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 I +E +QD VE +L+++G K+ + Y+LY R ++ + K++I+ Sbjct: 57 NQIPTVEQVQDIVEETLIEAGLSKVAKAYILY-------REKRAQIR-----KEKMQILN 104 Query: 150 DDGTLI---SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 D +F+ L ++V L S V+ E+ K ++ ++ +L++ Sbjct: 105 KDYIDEVDKAFDINALRVLVSRY---LNKDESGRVV-ESPKQLFQRVAIHVTLPSLLYDE 160 Query: 207 RTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 R +K L++E + KA +Y Sbjct: 161 RVFSKK-------------SSLQKESKIKIQDYLGKAR-----------IGKYFLNIYHL 196 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM 326 L + L ++DF+ L +L F E Sbjct: 197 EALERLHKRMNKEKL-----MKKDFS---EILNMLTKDEFKDYEKEVDE----------- 237 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 +YNL+ S FM +TP L N G +CF+ + D L I Sbjct: 238 ---------------YYNLMVSRKFMPNTPALVNFGNPLGMGMACFVLGMEDSLLSIMET 282 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L+ A++ + GG G +++ +R G + T+G S G I F+ + + + QGG R+G Sbjct: 283 LKNAAIIFQSGGGCGYNFSTLRPEGDFVRSTHGVSSGPIAFMTLFDKMTDVIKQGGVRRG 342 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A L + H D+E+F+ +K + + N + ++ + F + +N + L +P Sbjct: 343 ANMGILNSDHPDIEKFVVAKKGN----LQLTNFNISVFLKEDFWEYYKENKPYPLINPR- 397 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 ++ + I+ + ++ +E+ P + F D Sbjct: 398 --------------------------NKQIVKYINPKNFFDLIVYQGWESAEPGLLFDDN 431 Query: 567 CN-IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--------D 617 N + +G + S+N C E+ L + C+LGSINL A + Sbjct: 432 INRYNPFLKALGKIESTNPCGEVLLYPN----ESCDLGSINLWAFVEEEYDGEKRVVKIN 487 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 ++ L T+R AVR LDN++DIN + ++K ++ R IGLG+MG L L +PY S Sbjct: 488 WEDLEKTVRLAVRFLDNILDINKYPLKKIEERTLKTRKIGLGVMGLADTLFELELPYDSK 547 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 E ++ + MEFI++++ S+E+A++RG++ F S + G P Sbjct: 548 EGLDFMERIMEFINYYSKLESIEIAKKRGSFPYFNKSFYKNGNLPFR----------GFY 597 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W+++ + +K G+RN+ IAPT +I+ I G S I+P Y +Y K G Sbjct: 598 EKESWHFDWEKVSQDIKNHGLRNAYTTVIAPTGSISMIAGCSAGIEPVYSLVYEKKVTIG 657 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F VN +++ L+D+ +I D+ ++GSI NI IP K + TA +I + Sbjct: 658 SFYYVNPVFEKFMEREGLFDDNLIKDVVRNNGSIKNIPYIPQRYKNVFKTAKDISGKDHV 717 Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV----- 911 ++ + QKW+D + S + + S +++ Y A +G K R +S V Sbjct: 718 KALASIQKWVDSSVSKTINFPEDVSIEEMKETYLLAHELGCKGLTVYREKSIAGVYTVPQ 777 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD----TECEVC 953 E+ + V L V P + +C C Sbjct: 778 EQKEERKVMTSLKDEKVKGPTIYKEITPSFYTQEDYITASEKCPQC 823 >gi|168186577|ref|ZP_02621212.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum C str. Eklund] gi|169295443|gb|EDS77576.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum C str. Eklund] Length = 764 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 248/821 (30%), Positives = 392/821 (47%), Gaps = 110/821 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K+ +G + ++ + +V AC GL+ + ++ D +S +++ LI Sbjct: 2 DIKVKKRNGEYEKLHVEKTKKMVSLACEGLEGCDPLELEIDSRIQFRDCMSTKEIQKILI 61 Query: 204 FSSRTLI--------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 ++ + + N+ V AR L L +E K + ++ Sbjct: 62 QTAIEKVIYIDKNNHDNISSKKTNINWQYVAARLLAFDLYKEA------KINRDYNYFGY 115 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 + R + G+ + L E+ D ++ L++ ++ +RD F Y GL++L DRY + Sbjct: 116 GDFLYLVKRLVNIGLYGKYLIENYSDEEIKELSDYIEPKRDELFNYEGLKLLNDRYLIKG 175 Query: 309 INGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 NG +E+PQ FM +AM LA+ E K A +FY+L+S +TPTL N+GT Q Sbjct: 176 FNGEILELPQERFMVIAMHLAIPEGKNKIYYAKKFYDLISKLKMTVATPTLGNAGTPFYQ 235 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF++ V D+L+ I+ Q+ + ++K+ G LG VR L + I G S GVIP+ Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFSQVSKHGGALGIYIGKVRALNSEIRGHKNASGGVIPW 295 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ NDTAVAV+Q GKRKG L+ WH D+ +FLDL+ N GDDRR+ HD+ T+ IPD Sbjct: 296 IKLYNDTAVAVDQLGKRKGGAAITLDIWHKDIYDFLDLKTNNGDDRRKAHDIFTSVSIPD 355 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFR 538 +FM R+ W+LF P V L KEF Y E + Sbjct: 356 IFMTRLLNRESWSLFDPYMVHKLMGYKLEDYFDDEDNKEFTKRYLECEA----NKNLQRD 411 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595 +S + + +K++ ETG P+I F+D N +P +H G+++SSNLC EI N S Sbjct: 412 TVSCLDIMKKIMKSAVETGTPFIFFRDTVNRANPNKHRGMIYSSNLCHEIAQNMSESELI 471 Query: 596 --------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 + CNL SINL ++L I +R+LDNV Sbjct: 472 SEESTYKNGFNEVVSRVRSGDMVTCNLNSINLSKVSR------EELKEAIPLQIRMLDNV 525 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I +N ++++ ++ +RAIGLG G+ L I + S E ++ D E I++ +I Sbjct: 526 ISLNKLPVKESSITSDKYRAIGLGTSGYHQYLAKNRIKWESEEHIKEVDALFEDIAYESI 585 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS+ELA+E+GAY F+GS W G + W +L+ V Sbjct: 586 KASMELAKEKGAYPEFEGSEWQSGK--------------YFERRGYNSERWSKLRDDVAK 631 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RN MA+APT + +NI + IDP ++ +++ G FT +L + Sbjct: 632 YGIRNGYIMAVAPTGSTSNIANTTAGIDPVFKKFFIEE-KKGSFT---PKTAPDLNNDNF 687 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W + A I+ W I++ + RQK IDQ+QS NL Sbjct: 688 W---------------------------YYKEAHTINQEWSIKACAVRQKHIDQSQSFNL 720 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 Y+ + K + +Y ++W G+KT YY+R++S E S+ Sbjct: 721 YITPDIKAKDILDMYTESWRQGIKTIYYIRNKSIEMNECSS 761 >gi|161529135|ref|YP_001582961.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nitrosopumilus maritimus SCM1] gi|160340436|gb|ABX13523.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nitrosopumilus maritimus SCM1] Length = 884 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 204/916 (22%), Positives = 372/916 (40%), Gaps = 135/916 (14%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH-NK 88 ++ KR+G VT+F+ KIS AI KA A S + + L + V +L++ Sbjct: 12 EIRKRSGAVTAFNKDKISNAIYKALAAT-------SKADRGLADQLADNVVNKLVEQGFT 64 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 S +EDIQD VE +L+ SG+ I + Y++YR ER +R + +K++ Sbjct: 65 STRSPTVEDIQDIVESTLIDSGNSDIAKAYIVYRHERRKLRDEK------------MKVL 112 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT 208 L VS K DL + +SR Sbjct: 113 N--------------------LKALDPVSKKF----------------DLNCLRVLASRY 136 Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 L N + + E++ M ++ V+ Sbjct: 137 LFRNGKNEIIESPTQMFERV----------AILVGIGDLMYDAQVFDKSGNTKQDVEEAK 186 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-- 326 + L L D+ F +G +F + + + M+++ Sbjct: 187 SY-------LEKLDAF-----DYKF-KVGDYFFNKWHFRSLINHYVTLANKGHMKISFKE 233 Query: 327 ----GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 A K + E+++L+ S F+ ++PT+ N+G R QLS+CF+ + D + Sbjct: 234 LLTLLAAKKLDGYADKITEYFDLMVSQDFLPNSPTMMNAGGRLGQLSACFVLGMQDGMEE 293 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I + + A++ K GG+G +++ +R G + T+G + G + F+ + N V QGG Sbjct: 294 IMKSTSDAALIFKSGGGVGINYSDLREEGDIVASTSGVASGPVSFMNIINTVTEVVKQGG 353 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR+GA +E WH DVE+F+ + G +++ W + Sbjct: 354 KRRGANMGIIEAWHPDVEKFITNKTEPG--VLENFNVSVGVW------------EDFWHA 399 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + + L + K ++I+A L + +++ P + Sbjct: 400 LVNTSDGNYVLRSP---------------RDKKPVKEINAHQLIDLIALSAWKSAEPGLI 444 Query: 563 FKDPCNIRSPQQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQ 615 F D N + + ++N C E +L CNLGSINL+ + Sbjct: 445 FFDQINKYNVFAKARQAPLRATNPCGEQSLYPY----ESCNLGSINLVNLVKRQADGTYE 500 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD+ + TIR R LDN+ID+N + + + ++ R IGLG+MG L+ L IPY Sbjct: 501 FDWQRYEETIRKTTRFLDNIIDVNHYPVPEINVASKESRRIGLGVMGVADLLYKLRIPYN 560 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S E E+ + E ++++++ SV LA+ RG + + + +G P+ + Sbjct: 561 SKEGYELQSKLSEALTYYSMEESVALAKSRGEFPLCSKTEYPEGKIPVAGYYEKPKE--- 617 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + WD L +++K G+RN +APT T++ I S ++P++ ++ K Sbjct: 618 -----SHSYEWDALVEKIKQYGIRNVLTTTVAPTGTLSMIADCSNGMEPAFALVFEKRVT 672 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G F N + LK+ +L+++ +++ + + GS+ I+ IP ++ + TA +I Sbjct: 673 VGRFFYTNKIVEQVLKENNLYNDEILAKIADNYGSLKGIDEIPQWMQDVFVTAMDIHWSD 732 Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEK 913 + + Q WI A + + + + + + + Y A +GLK R S V Sbjct: 733 HLMAQGVWQDWIGNAIAKTINMPYDVTAEDVKSAYLLAHEIGLKGITVYRDGSRHKQVLH 792 Query: 914 STLKGVDGKLNAVPVT 929 T + + + P Sbjct: 793 MTSENAEKTFDVTPSE 808 >gi|330897025|gb|EGH28546.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] Length = 502 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 304/505 (60%), Positives = 372/505 (73%), Gaps = 21/505 (4%) Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 NTGDDRRRTHDMNTANWIPDLFMKRV + WTLFSP EV DLHDL GK F+ YE YE Sbjct: 1 NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 60 Query: 528 QA-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 G+IK+F+ I A LWRKML+MLFETGHPW+TFKDPCN+RSPQQHVGVVHSSNLCT Sbjct: 61 LTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 120 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 EITLN++ +E AVCNLGSINL H + + D DKL T+ AVR+LDNVIDIN +++ +A Sbjct: 121 EITLNTNKDEIAVCNLGSINLPNHIVDGKLDTDKLKRTVDVAVRMLDNVIDINYYSVPQA 180 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K SN HR +GLG+MGFQ AL+L HIPY S AV+ AD SME +S++AI AS +LA ERG Sbjct: 181 KNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERG 240 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 AY +F+GSLW +G+ P+DS +L E R ++++ L W ++ RV+ G+RNSN M Sbjct: 241 AYETFQGSLWSKGILPLDSQQILIEQRGEKYISVDLKETLDWAPVRARVQK-GIRNSNIM 299 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK R LWD MI+DL Sbjct: 300 AIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARGLWDSVMINDL 359 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK 884 KY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGKK Sbjct: 360 KYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKK 419 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS-- 942 LD YR AW GLKTTYYLR+ +ATS EKST+ GKLNAV ++ P Sbjct: 420 LDVTYRMAWYRGLKTTYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRPT 477 Query: 943 -------------SCTSDTECEVCQ 954 + +CE CQ Sbjct: 478 EAAPAGPAPVPKACAIDEPDCEACQ 502 >gi|294794441|ref|ZP_06759577.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 3_1_44] gi|294454771|gb|EFG23144.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 3_1_44] Length = 767 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 244/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 9 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 68 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 69 QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 122 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P ++E A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 123 NFPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 182 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K + A +FY+L+S +TPTL N+GT QL Sbjct: 183 NKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 242 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 243 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 302 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 303 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 362 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ + KEF Y E+ + I + Sbjct: 363 FMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 418 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 419 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 478 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 479 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 532 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+AI AS+ Sbjct: 533 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 592 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + + W +L V G+R Sbjct: 593 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 638 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 639 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 691 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 692 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 727 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 728 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 761 >gi|294792662|ref|ZP_06757809.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 6_1_27] gi|294456561|gb|EFG24924.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. 6_1_27] Length = 767 Score = 488 bits (1257), Expect = e-135, Method: Composition-based stats. Identities = 246/814 (30%), Positives = 392/814 (48%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 9 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 68 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 69 QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 122 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 123 NFPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 182 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K K A +FY+L+S +TPTL N+GT QL Sbjct: 183 NKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 242 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 243 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 302 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 303 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 362 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ + KEF Y E+ + I + Sbjct: 363 FMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI----E 418 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 419 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 478 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 479 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 532 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+AI AS+ Sbjct: 533 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 592 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + + W +L V G+R Sbjct: 593 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 638 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 639 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 691 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 692 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 727 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 728 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 761 >gi|282849774|ref|ZP_06259158.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella parvula ATCC 17745] gi|282580711|gb|EFB86110.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella parvula ATCC 17745] Length = 760 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 244/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 2 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 62 QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P ++E A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 116 NFPNLVNMLVKEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K + A +FY+L+S +TPTL N+GT QL Sbjct: 176 NKEIFELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ + KEF Y E+ + I + Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYSLEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+AI AS+ Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 585 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + + W +L V G+R Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 631 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 754 >gi|269798662|ref|YP_003312562.1| ribonucleoside-diphosphate reductase, subunit alpha [Veillonella parvula DSM 2008] gi|269095291|gb|ACZ25282.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella parvula DSM 2008] Length = 760 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 246/814 (30%), Positives = 392/814 (48%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 2 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 62 QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 116 NFPNLVNMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K K A +FY+L+S +TPTL N+GT QL Sbjct: 176 NKEIFELPQERFMAIAMHLALVEGKNKVKYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ + KEF Y E+ + I + Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYSLENYFDTDDKKEFTKRYIECEQDPNLHGI----E 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+F+AI AS+ Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAFYAIKASM 585 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + + W +L V G+R Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 631 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 754 >gi|238018469|ref|ZP_04598895.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748] gi|237864940|gb|EEP66230.1| hypothetical protein VEIDISOL_00296 [Veillonella dispar ATCC 17748] Length = 776 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 244/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 18 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 77 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 78 QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 131 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 132 NFPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 191 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K + A +FY+L+S +TPTL N+GT QL Sbjct: 192 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 251 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 252 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 311 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 312 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 371 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ + KEF Y E+ + I + Sbjct: 372 FMERMIARENFTLFDPHEILAVKGYALEDYYDTDDNKEFTKRYLECEQDPNLHGI----E 427 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 428 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 487 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 488 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 541 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I+++AI AS+ Sbjct: 542 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYAIKASM 601 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + + W +L V G+R Sbjct: 602 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLAADVAKYGIR 647 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 648 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNNKTFW--- 700 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 701 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 736 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 737 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 770 >gi|307205346|gb|EFN83694.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos saltator] Length = 701 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 212/729 (29%), Positives = 375/729 (51%), Gaps = 32/729 (4%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+T + +++ + +Y + R + L +E +K + LY Sbjct: 1 MTTVELDTLAADIAASMVNQHMDYEILAGRIAISNLHKET--------KKVFSEVITQLY 52 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + + +++ L + + Y+RDF + Y +IL +++ L +NG Sbjct: 53 HGNLSIMNRRLPRISEKYYTIIQEHADRLNSAIIYDRDFNYSYTAFKILENKHLLRLNGK 112 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 +E PQ MRVA+ + + + A+E YNLLS + + + TL ++ T Q++S F Sbjct: 113 VVERPQHMLMRVAVSIHNDDVDN---AIETYNLLSKQYIVHAAQTLNSACTVKQQMASSF 169 Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T+ D + GI +L+ A+L ++G +G + +R I GT G S G++P L+ Sbjct: 170 LLTMSEDSIDGILDSLERVAVLCHHNGDIGFNVHCIRAKNTPIRGTGGVSNGLVPMLRAY 229 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 N + +G + YLE WH D+ +FL+L+++ GD++ R DM A W PD+FM+ Sbjct: 230 NTSI-PTVCRKNIEGPITVYLEPWHSDIYQFLELKRDIGDEQLRAKDMFYALWTPDIFMR 288 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV +A W+L P E L D++G EFE Y YE E + +++ A LW + Sbjct: 289 RVFDDADWSLMCPHECPGLIDVWGDEFEALYIRYEE-----ENRYRKQVKARDLWVFITQ 343 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG--SINLLA 609 + +TG P+I +KD CN++S QQ++G ++ + TE+ S+S+E A C+L ++++ Sbjct: 344 LQIQTGTPYIVYKDHCNLKSNQQNLGTINCGSFSTEVIQYSASDEIAACHLATIAVDMFV 403 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + +D+ KL ++ LD +ID+N + +E+ S + RAIG+ G A L Sbjct: 404 NSTTKTYDFSKLKKVVKIVTYNLDKMIDVNLYPLEEVTFSAYRQRAIGISASGLADAFIL 463 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + P+ S EA ++ + E + A+ AS E+A E G Y++++GS +G+ + Sbjct: 464 MRYPFESKEAKKLNVQIFETFYYGALEASCEMAIEDGPYATYEGSPVSKGILQYEMWNAK 523 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T WD LK ++ G+RNS +A +A + G ++S+ P N+ Sbjct: 524 P----------TDLWDWDTLKAKIAKYGVRNSLLIAQTSDTFMAQMLGNNESVGPYTSNI 573 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 S F V L+ +L ++ LW E M + + + GSI +I+ IPDDLK ++ TA+ Sbjct: 574 CTMHASSKLFPYVKKHLLRDLIEKGLWSEDMCNKIISNGGSIQDIDDIPDDLKLLYKTAW 633 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK-TTYYLRSRSA 908 E+ + E A+ R +IDQ+Q LN+++ +PS KL ++ AW +GLK + Y+ ++ Sbjct: 634 EMPQKRIFEMAAARGPFIDQSQCLNVHMKDPS-DKLTSMHFYAWEIGLKSSMYHFKTEDF 692 Query: 909 TSVEKSTLK 917 T+ + K Sbjct: 693 TNCTQVKEK 701 >gi|281339148|gb|EFB14732.1| hypothetical protein PANDA_021921 [Ailuropoda melanoleuca] Length = 500 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 194/513 (37%), Positives = 297/513 (57%), Gaps = 18/513 (3%) Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+L Sbjct: 1 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 60 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P++ + Sbjct: 61 PNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLY 115 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLA 622 KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ KLA Sbjct: 116 KDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLA 175 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + VR L+ +IDIN + + +A SN HR IG+G+ G A L+ P+ SPEA + Sbjct: 176 EVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLL 235 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I + A+ AS +LA+E G Y +++GS +G+ D + T Sbjct: 236 NKQIFETIYYGALEASCDLAREHGPYETYEGSPVSRGILQYDMWNVTP----------TD 285 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W LK+++ G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +V Sbjct: 286 LWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 345 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N L+ +L +R LW+E M + + +GSI +I IPDDLK+++ T +EI +++ A+ Sbjct: 346 NPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 405 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD- 920 R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R A + + TL Sbjct: 406 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKL 465 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + S + EC +C Sbjct: 466 KDKEKATKEEEEKERNTAAMVCSLENREECLMC 498 >gi|303230488|ref|ZP_07317247.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514854|gb|EFL56837.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-049-V-Sch6] Length = 760 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 243/814 (29%), Positives = 392/814 (48%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 2 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 62 QTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 116 NFPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K + A +FY+L+S +TPTL N+GT QL Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ + KEF Y E+ + I + Sbjct: 356 FMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDPNLHGI----E 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I++++I AS+ Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASM 585 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + + W +L V G+R Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLASDVAKYGIR 631 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSIEMDE 754 >gi|289596835|ref|YP_003483531.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|289534622|gb|ADD08969.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 785 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 222/948 (23%), Positives = 387/948 (40%), Gaps = 189/948 (19%) Query: 22 FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQTV 80 E+ + ++VIKR+G + F KI +AIMKA ++ G G + RV + +++ + E V Sbjct: 1 MSEEGEVMKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKESRV 60 Query: 81 TRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAP 140 R+ +E IQD VE +LM G+ + + Y+LYREER +R A+ Sbjct: 61 ERIT----------VEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKVIGVQDD 110 Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 + + + V EA L+D + ++ ET + M++ Sbjct: 111 LKLTVNAIK----------------VLEARYLLKDENGNVI--ETPRQMFE--------- 143 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 ++R L L++ Sbjct: 144 ---RTARYLA-------------LVDIFY------------------------------- 156 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 E+ + + + D+ L +F Sbjct: 157 EDDIYDKEGKQKERKIDVEEKPEFLSI-WEFNMLKRAFTYFSK---------------EG 200 Query: 321 FMRVAMGLALKETEKEKRAVE-----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +M+V L + + +E F ++ ++ ++PTL N+ T+ QLS+CF+ Sbjct: 201 YMKVDFSYVLDSLKSKWDKIERVKNKFAEVMLHRKYVPNSPTLMNANTKLGQLSACFVLP 260 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD + GIF A++ AM+ K GG G ++ +R G + T G + G + F++V + Sbjct: 261 VPDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVAT 320 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + QGGKR+GA L H D+ EF+ + + + + N + + D FM + + Sbjct: 321 DVIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDALLR 377 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + + L +P + ++I A +W ++T ++ Sbjct: 378 DDYYPLRNPR---------------------------NGEEVKRIKARQVWDLIITQAWK 410 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 TG P + F D N + P +H+G + S+N C E L CNLGSINL N + Sbjct: 411 TGDPGVIFIDEVNRKHPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGK 466 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 +D L T+ TAV +DNVID N + + + + R IGLG+MG+ L L IPY Sbjct: 467 IKWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYD 526 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EAVE+A++ M+FI+ + AS++LA++RG + +++GS W ++R+ Sbjct: 527 SEEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNA 577 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + I G S SI+P + +++ + Sbjct: 578 TTTTIAPTGTI--------------------------SIIAGTSSSIEPLFAIAFIRRVL 611 Query: 796 SG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G + VN +K+ L+ E ++ + GS+ +I+ +P+++K++ TA +IDP+ Sbjct: 612 DGQELLEVNPLFEEIMKREGLYSEELMHKVAET-GSVQHIDDVPENIKRLFRTAHDIDPV 670 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA----- 908 W + + QK++D A S + L + S ++ Y AW + K R S Sbjct: 671 WHVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSKNVQVI 730 Query: 909 ------TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 T E K + NA+ N + T D C Sbjct: 731 YKGTKTTKQEIKEEKKKESSANALIDLTFNVKVEEKYLKVDSTFDPAC 778 >gi|322379521|ref|ZP_08053886.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS1] gi|322380284|ref|ZP_08054500.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS5] gi|321147267|gb|EFX41951.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS5] gi|321148076|gb|EFX42611.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter suis HS1] Length = 798 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 307/821 (37%), Positives = 435/821 (52%), Gaps = 114/821 (13%) Query: 144 KLKIMMDDGTLI--SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 ++ + + + ++++ I+ +A GL + + +E ++ S DL T+ Sbjct: 16 EMTATKRNESKVLPEQQIEQIKQIIHKATEGLTGLDKQEFETEA---LHCN-STQDLFTS 71 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI + I+ + PN++ V AR LE L ++V P + + Sbjct: 72 LIKMAVDRIDVDAPNWSFVAARLFLEDLYQKVSGFSGYLPLRVYLERGES---------- 121 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQA 319 K R++ FDL L + LK ERD+ F YLG++ LYDRY L IE+PQ Sbjct: 122 ----KGRIVRGFKEKFDLELLDSALKPERDWQFNYLGIKTLYDRYLLKDESNHPIELPQH 177 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 FM +AM LA E++ RA+EFY +LS F MC+TPTL N+ T + QLSSC++ + PD+ Sbjct: 178 MFMAIAMFLAQNESDPNARALEFYGVLSRFELMCATPTLANARTPNHQLSSCYIGSTPDN 237 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GIF + ++ A+L+KY GG+G D++ VR LG+ I G S GVIPFLK+AND AVAV+ Sbjct: 238 IEGIFDSYKDMALLSKYGGGIGWDFSQVRCLGSFIDGHKSASAGVIPFLKIANDVAVAVD 297 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G RKGA+ YLE WH+D+ EF+DLRKN+GD+RRR HD+ A WI DLFM+RV + W Sbjct: 298 QLGTRKGAIAVYLEIWHMDILEFIDLRKNSGDERRRAHDLFPALWICDLFMQRVEADQEW 357 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 TLF P DL +G EFE Y YE+ + V +I A LW+K+LT FETG P Sbjct: 358 TLFDPYRCQDLTQCFGAEFEAKYLAYEQDSHM----VKHRIKARDLWKKILTNYFETGLP 413 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC------------------- 600 ++ FKD N +P HVG++ SSNLCTEI N+SS + Sbjct: 414 FLGFKDNANRANPNGHVGMIRSSNLCTEIYQNTSSSHYKMQIDFTDGSREFFEELEEVCT 473 Query: 601 --------------------------------NLGSINLLAHFANNQFDYDKLASTIRTA 628 + NL + + L + A Sbjct: 474 DTGITKRANKLSSNDSLGGKKIFMASKVAEEGMVAVCNLASLNLSKINSQQDLERVVPIA 533 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 VR+LDNVID+N + I KAK++N RAIGLG+MG L I + S E D +E Sbjct: 534 VRMLDNVIDLNFYPISKAKETNLKSRAIGLGVMGEAQMLAEARIKWGSAEHALKMDFLLE 593 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 +S+ AI AS +LA ERG+Y+ F+GS W QG+FPID I + R W Sbjct: 594 KMSYEAIKASSQLAIERGSYAYFEGSAWSQGIFPIDYIKQEVKEISPHK----PRCDWKS 649 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LKK+VK G+RN MAIAPT++I+ + G +Q+I+P YQ +++ N+SG VV Sbjct: 650 LKKKVKEQGLRNGYLMAIAPTSSISILVGTTQTIEPIYQKKWLEENLSGLIPVV------ 703 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + + + +A++ID +I+ A+ RQKWID Sbjct: 704 -------------------------VPSLSLETWPFYTSAYDIDAKDMIKLAAVRQKWID 738 Query: 869 QAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 Q QSLNL+L + SGK L IY AW +GLK+TYYLR++S Sbjct: 739 QGQSLNLFLRPKKASGKLLHEIYYLAWKLGLKSTYYLRTQS 779 >gi|297837607|ref|XP_002886685.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp. lyrata] gi|297332526|gb|EFH62944.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp. lyrata] Length = 688 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 229/642 (35%), Positives = 339/642 (52%), Gaps = 53/642 (8%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y+RDF +++ G + L Y L ++G +E PQ MRV +G+ + E A++ Y+ Sbjct: 82 IVYDRDFDYDFFGFKTLERLYLLKVHGKVVERPQHMLMRVVVGIHM---EDIDSAIKTYH 138 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L+S F ++PTLFN+GT PQLSS FL + D I LQ+ ++ K +G + Sbjct: 139 LMSQRLFTHASPTLFNAGTPRPQLSSSFLICMRD--DSIESTLQKCDVIRKSAGSISVSV 196 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 ++G + + GGK+ G YLE WH D+ EFL Sbjct: 197 HNIQGTNGVVPMLDVDQG------------------GGKKNGPFAVYLEPWHADIFEFLK 238 Query: 465 LRKNTGD-DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 ++KN G + M A WIPDLFM+RV + W+LF P+E L D +G EFE Y Sbjct: 239 IQKNHGKVQNSQEEHMAIALWIPDLFMERVKHDGKWSLFCPNEAPGLADCWGTEFERLYT 298 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 YER E K + A + +LT ETG P++ FKD CN +S QQ++G + SS+ Sbjct: 299 KYER-----EGKAKKVFPAQEPFFDILTSQLETGMPYMLFKDSCNRKSNQQNLGTIKSSS 353 Query: 584 LCTEITLNSSSEETAVCNLGSINLLA-------------HFANNQFDYDKLASTIRTAVR 630 LCT + +S ET VCNL SI L + FDYDKLA Sbjct: 354 LCTGVIEYTSPTETTVCNLASIALDVPLDSHPSKLAGSLRSKSRYFDYDKLAEVTAIVTN 413 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LD +ID N + +E A+ SN HR IG+G+ G A LL +P+ SPEA ++ + E I Sbjct: 414 DLDRIIDGNYYPVETAETSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQKLNKDIFETI 473 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 +HA+ AS ELA AY ++KGS +G+ D + R WD L+ Sbjct: 474 YYHALKASSELAARNDAYETYKGSPMSKGILQPDMWNVTPSNR----------WDWDFLR 523 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 + + G+RNS +++ PTA+ + I G ++S +P N+Y +SG+ +VN L+++L Sbjct: 524 EMISKNGVRNSLLVSLMPTASTSQILGNNESFEPYTSNIYSHRGLSGESILVNKHLLHDL 583 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + LW + + +GSI N+ IPDD+K I+ TA+EI +++ A R +IDQ+ Sbjct: 584 TEMGLWTPTLKEKIIDENGSIRNVPEIPDDMKAIYRTAWEIKQRTVVDMAVDRGCYIDQS 643 Query: 871 QSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 Q+LN+ L+EPS +KL ++ W GLKT +YLRSR+ T V Sbjct: 644 QTLNINLEEPSYQKLTSLHFYTWTKGLKTGMHYLRSRATTMV 685 >gi|303228691|ref|ZP_07315516.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516671|gb|EFL58588.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella atypica ACS-134-V-Col7a] Length = 760 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 243/814 (29%), Positives = 393/814 (48%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 2 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELEMDAKLQFVDGMTTKEIQKTLV 61 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 62 QTAIEKVIAKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 116 NFPNLVHMLVEEKKYADFFVTEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K + A +FY+L+S +TPTL N+GT QL Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGKNKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDL---------YGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ + KEF Y E+ ++ I + Sbjct: 356 FMERMIGRENFTLFDPHEILAVKGYALEDFYDTDDNKEFTKRYLECEQDSNLHGI----E 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 472 EIINKDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I++++I AS+ Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASM 585 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + + W +L V G+R Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------EYFTRRGYTSDRWKQLASDVAKYGIR 631 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNDKTFW--- 684 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 721 QMKAKEILDLYVEAYKQGIKTIYYIRNQSLEMDE 754 >gi|313894419|ref|ZP_07827984.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441243|gb|EFR59670.1| ribonucleoside-diphosphate reductase, alpha subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 760 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 243/814 (29%), Positives = 390/814 (47%), Gaps = 106/814 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ I DG + ++ + ++ AC GL + + DG++ +++ L+ Sbjct: 2 EIMIKKRDGHFEPLSVEKTKRMIAFACLGLDSCDPLELELDAKLQFVDGMTTKEIQKTLV 61 Query: 204 FSSRTLI-------------EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + ++ V AR L L +E + Sbjct: 62 QTAIEKVISKKDDGFGNQVNKMNQDWQFVAARLFLFDLYKEA------AITRRYKAFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +P +EE A +L L + +K +RD+ F Y GL++L DRY + Sbjct: 116 NFPNLVHMLVEEKKYADFFVSEYTADELQELGDYIKPKRDYLFNYEGLKLLADRYLVKGF 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 N E+PQ FM +AM LAL E K + A +FY+L+S +TPTL N+GT QL Sbjct: 176 NKEIYELPQERFMAIAMHLALVEGENKVEYAKKFYDLMSQLKMTTATPTLANAGTPFHQL 235 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++ V D+L+ I+ + + ++K+ G LG VR L + I G S GVIP++ Sbjct: 236 SSCFISGVDDNLWSIYDVNSKFSRVSKHGGALGIYLGKVRALNSDIRGFKNSSGGVIPWI 295 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q GKRKG L+ WH D EF++LR N GDDRR+ HD+ A +P++ Sbjct: 296 RLYNDTAVAVDQLGKRKGGATVTLDIWHKDFYEFVELRTNNGDDRRKAHDIFPAISVPNI 355 Query: 489 FMKRVTQNAGWTLFSPDEV---------SDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ +TLF P E+ KEF Y E+ + I + Sbjct: 356 FMERMLARENFTLFDPHEILAVKGYALEDYFDTEDEKEFTKRYIECEQDPNLHGI----Q 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------- 591 + A+ + +K++ ETG P+I F+D N +P +H G++++SNLC EI N Sbjct: 412 VPALDMMKKIMRSAVETGTPFIFFRDTVNAANPNKHAGMIYASNLCHEIAQNVGFTNLAE 471 Query: 592 ------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +++ + CNL SI+L ++L I +R+LDNVI IN Sbjct: 472 EIINEDGTITTKTNTGDMVTCNLNSISLGRITD------EELEENIALQIRMLDNVISIN 525 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +++ ++ +RAIGLG G+ L I + S E +E+AD+ E I++++I AS+ Sbjct: 526 QAPVPESRMTSDKYRAIGLGTSGYHHYLVNHDIQWESDEHIEVADKLFENIAYYSIKASM 585 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+GAY +FKGS W+ G + W +L V G+R Sbjct: 586 ELAKEKGAYPAFKGSEWETG--------------AYFTRRGYTSDRWKQLAADVAKYGIR 631 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 632 NGYLMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKTAPDLNNKTFW--- 684 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 ++ A ID W I++ RQ+ IDQAQS NLY+ Sbjct: 685 ------------------------LYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITP 720 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + K++ +Y +A+ G+KT YY+R++S E Sbjct: 721 QMKAKEILDLYVEAYKQGVKTIYYIRNQSLEMDE 754 >gi|254168705|ref|ZP_04875547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197622331|gb|EDY34904.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 796 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 222/950 (23%), Positives = 387/950 (40%), Gaps = 189/950 (19%) Query: 20 YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV-QDIIKNLTEQ 78 E+ + ++VIKR+G + F KI +AIMKA ++ G G + RV + +++ + E Sbjct: 10 RSMSEEGEVMKVIKRDGRIVDFSEDKIFQAIMKAMNSIGGYGEEDAQRVTRKVVEKIKES 69 Query: 79 TVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSD 138 V R+ +E IQD VE +LM G+ + + Y+LYREER +R A+ Sbjct: 70 RVERIT----------VEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKVIGVQ 119 Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 + + + V EA L+D + ++ ET + M++ Sbjct: 120 DDLKLTVNAIK----------------VLEARYLLKDENGNVI--ETPRQMFE------- 154 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 ++R L L++ Sbjct: 155 -----RTARYLA-------------LVDIFY----------------------------- 167 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 E+ + + + D+ L +F Sbjct: 168 --EDDIYDKEGKQKERKIDVEEKPEFLSI-WEFNMLKRAFTYFSK--------------- 209 Query: 319 AFFMRVAMGLALKETEKEKRAVE-----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +M+V L + + +E F ++ ++ ++PTL N+ T+ QLS+CF+ Sbjct: 210 EGYMKVDFSYVLDSLKSKWDKIERVKNKFAEVMLHRKYVPNSPTLMNANTKLGQLSACFV 269 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 VPD + GIF A++ AM+ K GG G ++ +R G + T G + G + F++V + Sbjct: 270 LPVPDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDV 329 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + QGGKR+GA L H D+ EF+ + + + + N + + D FM + Sbjct: 330 ATDVIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDAL 386 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ + L +P + ++I A +W ++T Sbjct: 387 LRDDYYPLRNPR---------------------------NGEEVKRIKARQVWDLIITQA 419 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++TG P + F D N + P +H+G + S+N C E L CNLGSINL N Sbjct: 420 WKTGDPGVIFIDEVNRKHPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVEN 475 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + +D L T+ TAV +DNVID N + + + + R IGLG+MG+ L L IP Sbjct: 476 GKIKWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIP 535 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S EAVE+A++ M+FI+ + AS++LA++RG + +++GS W ++R Sbjct: 536 YDSEEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIR 586 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + I G S SI+P + +++ Sbjct: 587 NATTTTIAPTGTI--------------------------SIIAGTSSSIEPLFAIAFIRR 620 Query: 794 NMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G + VN +K+ L+ E ++ + GS+ +I+ +P+++K++ TA +ID Sbjct: 621 VLDGQELLEVNPLFEEIMKREGLYSEELMHKVAET-GSVQHIDDVPENIKRLFRTAHDID 679 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA--- 908 P+W + + QK++D A S + L + S ++ Y AW + K R S Sbjct: 680 PVWHVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSKNVQ 739 Query: 909 --------TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 T E K + NA+ N + T D C Sbjct: 740 VIYKGTKTTKQEIKEEKKKESSANALIDLTFNVKVEEKYLKVDSTFDPAC 789 >gi|326792203|ref|YP_004310024.1| ribonucleoside-diphosphate reductase, subunit alpha [Clostridium lentocellum DSM 5427] gi|326542967|gb|ADZ84826.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium lentocellum DSM 5427] Length = 763 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 252/817 (30%), Positives = 390/817 (47%), Gaps = 109/817 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++I DG L + + + +VE AC L + + D ++ +++ LI Sbjct: 2 TIEIRKRDGRLEPLCASKTKKMVEFACRNLAGCDPIELELDAKIQFRDKMTTREIQKVLI 61 Query: 204 FSSRTLIEKEP-------------NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + + N+ V AR L+ L +E + H Sbjct: 62 QTAIEKVIQTNEDAYGNQVKQTYINWQYVAARLLVYDLYKEA------AISRGYTHFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 Y + I G+ L + D ++ LA + ERD F Y G+++L DRY + Sbjct: 116 DYKALYEELIHRGLYGDYLKMNYTDTEVEELAAYINPERDDLFNYEGIKLLADRYLVKGY 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 G +E+PQ FM +AM LA+ E ++ A +FY+LLS +TPTL N+GT QL Sbjct: 176 KGEVMELPQERFMTIAMHLAIPEGEKRVYYAKQFYDLLSQLKMTVATPTLANAGTAFYQL 235 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF++TV D+L+ I+ Q+ A ++K+ G LG VR L + I G S GVIP++ Sbjct: 236 SSCFISTVGDNLWSIYDVNQKFAQVSKHGGALGIYLGKVRALNSEIRGHKRSSGGVIPWV 295 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ NDTAVAV+Q G+RKG+ L+ WH D+ +FL+L+ N GDDRR+ HD+ + IPDL Sbjct: 296 RLYNDTAVAVDQLGRRKGSASVTLDVWHSDLYDFLELKTNNGDDRRKAHDIFPSISIPDL 355 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLY---------GKEFEIAYENYERQADRGEIKVFRK 539 FM+R+ + W+LF P V Y K F Y E I Sbjct: 356 FMERLLKRENWSLFDPYMVHKEMGFYLEDYFDDEEDKAFTTRYLACEANEKLERI----T 411 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--- 596 I + + +K++ ETG P+I F+D N +P +H+G++++SNLC EI N S+ E Sbjct: 412 IPTLDIMKKIMISAVETGTPFIFFRDTVNRANPNKHLGMIYASNLCHEIAQNMSASELIA 471 Query: 597 --------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 CNL S NL ++ I +R+LDNVI Sbjct: 472 EGTKEVNGEMEVYSRIKPGDMVTCNLNSTNLGRVER------EEFKDIIPLQIRMLDNVI 525 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 +N +++A+ ++ +RAIGLG G+ L HI + S E +++ADE E +++ AI Sbjct: 526 TLNQLPVKEAQLTSDRYRAIGLGTSGYHHYLVNHHISWESEEHLKVADELFEDMAYEAIR 585 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S+ELA+E+GAY F+GS W GV + W +LK+ V Sbjct: 586 GSMELAKEKGAYPGFEGSEWQTGV--------------YFERRGYTSPRWQKLKEEVAKY 631 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RN MA+APT + +NI + IDP ++ +++ G FT +L + W Sbjct: 632 GLRNGYIMAVAPTGSTSNIANTTAGIDPIFKKFFIEE-KKGSFT---PKAAPDLCAENFW 687 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ A I+ W I++ RQ+ IDQAQS NLY Sbjct: 688 ---------------------------LYKEAHHINQSWSIKACGIRQRHIDQAQSFNLY 720 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + E K + +Y AW G+KT YY+R++S + E Sbjct: 721 VTPEVKAKDILQMYIDAWQEGVKTLYYVRNQSLETDE 757 >gi|298707147|emb|CBJ29920.1| conserved unknown protein [Ectocarpus siliculosus] Length = 821 Score = 485 bits (1249), Expect = e-134, Method: Composition-based stats. Identities = 201/707 (28%), Positives = 332/707 (46%), Gaps = 53/707 (7%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDG 192 + + AP + ++ DG ++ + C GL + + +V + + +Y G Sbjct: 163 EEGERGGAPSMHVVKRDGRREPVMFDKITARIRRLCWGLDERYIDPVLVAQKVVQGIYSG 222 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +L+T + + + P+YA++ AR + L+R + ++ L+ Sbjct: 223 VTTWELDTLAAETCAYMNTEHPHYARLAARISVSNLQRATSPSFADTVEE--------LH 274 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 + + ++ + + ++K+ERDF+ ++ G + L Y L + Sbjct: 275 AYVDPKTGRQAGYISDEVHEIVMKNRDLIDAEVKHERDFSLDFFGFKTLERAYLLKLGDK 334 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 +E PQ FMR+A+G+ E + A E Y+L+S F+ ++PTLF++GT PQLSSCF Sbjct: 335 VMERPQYMFMRIAIGIHG---EDLEAAFETYHLMSEKWFIHASPTLFHAGTCQPQLSSCF 391 Query: 373 LTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T D + GI+ L++ + +G + I + Sbjct: 392 LLTTKEDSIAGIYDTLKQWHSVGAGAGFVLAVVVSSSVCVGSISVRANLPTFLCSPRLKI 451 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + + + L L D+ WIPDLFM+ Sbjct: 452 DPVSCPCSHQPMFP-----------------LPLCTQPL-----KRDLFYGLWIPDLFME 489 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV Q+ W+L P + L + +GKEFE Y YER E K RK+ A LW +L Sbjct: 490 RVEQDGEWSLMCPSQCPGLSECWGKEFEELYTKYER-----EGKYMRKVRAQDLWFAILD 544 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG+P++ +KD CN +S +H+G + SSNLCTEI + E AVCNLGS+ L Sbjct: 545 AQTETGNPYMMYKDACNRKSNHKHLGTIQSSNLCTEIVEYTDPGEVAVCNLGSVVLPKFV 604 Query: 612 ANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + + FD+ +L + VR L+ +ID+N + +E+A+ SN HR +G+G+ G A Sbjct: 605 SEDGKSFDHQRLFEVTKVFVRNLNKIIDVNWYPVEEAQHSNARHRPMGIGVQGLADAFIK 664 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + +P+ S A + + E + F A++AS ELA++ G Y +F+GS +G+F D G Sbjct: 665 MRMPFESEGARALNRDIFETMYFAAMTASCELAEKEGPYETFEGSPVSKGIFQFDMWGET 724 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R W L+ RV G+RNS +A PTA+ A I G ++ I+P NL Sbjct: 725 PSDR----------WDWASLRTRVAKHGVRNSLLLAPMPTASTAQILGFNECIEPYTSNL 774 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 Y + +G+F VVN L +L + LW ++ + L GSI +I Sbjct: 775 YARRVKAGEFIVVNPHLFTDLMEMGLWSPSVRNQLMASGGSIASIAG 821 >gi|51891460|ref|YP_074151.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium thermophilum IAM 14863] gi|51855149|dbj|BAD39307.1| ribonucleoside-diphosphate reductase alpha subunit [Symbiobacterium thermophilum IAM 14863] Length = 782 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 253/812 (31%), Positives = 390/812 (48%), Gaps = 84/812 (10%) Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189 A + + P +L +++D ++ L +V AC + + ++E + Sbjct: 18 AISNAVRPAQPYQGELNMLLD--ERVNVPEIDLTELVVSACRSIYPERASEFIAELRPLL 75 Query: 190 YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 + S + +EP++ V AR L+KL E + + + Sbjct: 76 HATTDRSQQMDLAARLAAEKTSVEEPDWQYVAARLYLQKLYGEAARNRG--YHQPGYGDF 133 Query: 249 QCLYPEYFCRYIE--EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 L + E V + E+ + ++ L ++ ERD F Y+GL L DRY Sbjct: 134 YELVRQLHAMGDEAGNRVYGAYMIEAYSEEEIRELGRYIRPERDELFTYVGLLHLADRYL 193 Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 + +G +E+PQ +M +AM LA E+++ A FY++LS +TPT N+ T Sbjct: 194 IKGFHGEILELPQERYMHIAMHLASVESDRVTWAKRFYDVLSRQEMTVATPTFRNAATPL 253 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 PQLSSCF+ TV D L I+ Q A ++K+ GG+G +R G+ I G G + GVI Sbjct: 254 PQLSSCFIDTVDDSLQSIYDTNQSFAQVSKHGGGMGIYIGKLRARGSAIRGRKGAAAGVI 313 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P+++ NDTAVAV+Q G RKGAV +L+ WH ++ EFL L+ N GDDR R HD+ + Sbjct: 314 PWVRNYNDTAVAVDQLGARKGAVSIWLDVWHKEIFEFLALKLNNGDDRMRAHDIFPGVCV 373 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKI 540 PD FM+ V Q+A W LF P EV D +G+E+E Y A ++ + Sbjct: 374 PDAFMRAVEQDADWHLFCPHEVRTEMGFSLEDAWGEEWERRYRLCVEAAHADKLDAT-VV 432 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----- 595 A + + ML +ETG P++ F+D N +P +H G+V+ SNLCTEI N S Sbjct: 433 RARQVAKAMLKSQYETGGPFLFFRDTVNRLNPNKHAGMVYCSNLCTEIAQNQSPTRLIEK 492 Query: 596 --------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 + VCNL SINL +K+A + A+R+LDNVID+N + Sbjct: 493 TDDGEVITYRWQPGDFVVCNLASINLSKVHT-----EEKIAEVVPLAIRMLDNVIDLNFY 547 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +AK +N +RAIGLG+ G+ L L I + S + + ADE E ++++A+ S+EL Sbjct: 548 PVPQAKITNKKYRAIGLGVHGYHQMLAELGIHWESEDHLRKADEVFELLNYYAVKTSIEL 607 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A E+G Y KGS W+ G + A+ W L+++ +G+RN+ Sbjct: 608 AAEKGCYPLCKGSDWETG--------------EYFALRGYESDRWQALRRQAAEVGLRNA 653 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +AIAPT++ + +CG + S+DP Y +Y + + Sbjct: 654 YLLAIAPTSSTSLLCGTTASVDPIYDRVYNEGKKDQVIPLAAP----------------- 696 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + + A +ID W I +A RQ+ IDQ+QS NLY+ + Sbjct: 697 --------------GLSPKTYLYYKPAHQIDQTWSIRAAGVRQRHIDQSQSFNLYIRPDI 742 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 G+ +Y QAW GLKT YY+RSRS E Sbjct: 743 KGRDFLNLYMQAWKNGLKTVYYVRSRSLEVTE 774 >gi|254168812|ref|ZP_04875653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197622249|gb|EDY34823.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 796 Score = 482 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 220/947 (23%), Positives = 385/947 (40%), Gaps = 187/947 (19%) Query: 22 FPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVT 81 E+ + ++VIKR+ + F KI +AIMKA ++ G ++ + +T + V Sbjct: 12 MSEEGEVMKVIKRDSRIVDFSEDKIFQAIMKAMNSIGGYS-------EEDAQRVTWKVVE 64 Query: 82 RLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPI 141 ++ + + +E IQD VE +LM G+ + + Y+LYREER +R A+ + Sbjct: 65 KIKESRVER--ITVEKIQDIVEETLMLEGYINVAKSYILYREERRKIRQAKKVIGVQDDL 122 Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 + + V EA L+D + ++ ET + M++ Sbjct: 123 KLTVNAIK----------------VLEARYLLKDENGNVI--ETPRQMFE---------- 154 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 ++R L L++ E Sbjct: 155 --RTARYLA-------------LVDIFY-------------------------------E 168 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + + + + D+ L +F + Sbjct: 169 DDIYDKEGKQKERKIDVEEKPEFLSI-WEFNMLKRAFTYFSK---------------EGY 212 Query: 322 MRVAMGLALKETEKEKRAVE-----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 M+V L + + +E F ++ ++ ++PTL N+ T+ QLS+CF+ V Sbjct: 213 MKVDFSYVLDSLKSKWDKIERVKNKFAEVMLHRKYVPNSPTLMNANTKLGQLSACFVLPV 272 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 PD + GIF A++ AM+ K GG G ++ +R G + T G + G + F++V + Sbjct: 273 PDSIEGIFNAVKYAAMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATD 332 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + QGGKR+GA L H D+ EF+ + + + + N + + D FM+ + ++ Sbjct: 333 VIKQGGKRRGANMGVLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMEALLRD 389 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 + L +P + +KI A +W ++T ++T Sbjct: 390 DYYPLRNPR---------------------------NGEEVKKIKARQVWDLIITQAWKT 422 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 G P I F D N R P +H+G + S+N C E L CNLGSINL N + Sbjct: 423 GDPGIIFIDEVNRRHPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGKI 478 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +D L T+ TAV +DNVID N + + + + R IGLG+MG+ L L IPY S Sbjct: 479 KWDDLRDTVHTAVHFMDNVIDANNYPLPQVAEMTRRSRKIGLGVMGWAEMLIKLGIPYDS 538 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EAVE+A++ M+FI+ + AS++LA++RG + +++GS W ++R+ Sbjct: 539 EEAVELAEKVMKFINEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNAT 589 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + I G S SI+P + +++ + Sbjct: 590 TTTIAPTGTI--------------------------SIIAGTSSSIEPLFAIAFIRRVLD 623 Query: 797 G-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G + VN +K+ L+ E ++ + GS+ +I+ +P+++K++ TA +IDP+W Sbjct: 624 GQELLEVNPLFEEIMKREGLYSEELMHKVAET-GSVQHIDDVPENIKRLFRTAHDIDPVW 682 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA------ 908 + + QK++D A S + L + S ++ Y AW + K R S Sbjct: 683 HVRMQAAFQKYVDNAVSKTVNLRHDASISDVEDTYILAWKLKCKGITIYRDGSKNVQVIY 742 Query: 909 -----TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 T E K + NA+ N + T D C Sbjct: 743 KGTKTTKQEIKEEKKEESSANALIDLTFNVKVDEKYLKVDSTFDPAC 789 >gi|319765946|ref|YP_004131447.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus sp. Y412MC52] gi|317110812|gb|ADU93304.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. Y412MC52] Length = 785 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 263/805 (32%), Positives = 393/805 (48%), Gaps = 92/805 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201 K+ I+ D G +SF+ + ++ +A +G +S + ++ + + ++ L Sbjct: 31 KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90 Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 I + I E EP++ V AR L +L RE + E + Sbjct: 91 AILEGLSYIDEDEPDWTFVCARLYLRQLYREAARQRGYDER-----ERYGDFYSLLVALT 145 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 E+GV + LL E ++ + L E+D F Y+GL+ L DRY E+PQ Sbjct: 146 EQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYELPQE 205 Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +AM L + E + + E Y LS+ + +TPTL N+G + QLSSCF+ TV Sbjct: 206 RFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 265 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+ Sbjct: 266 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 325 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++V Q Sbjct: 326 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 385 Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547 W LF P EV + ++ F Y ++ + K + A+ + + Sbjct: 386 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSKEK----VPAIEVMK 441 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595 ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501 Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + LA I +R+LDNVID+N + +A Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E+G+Y Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F GS W G + E R + L WD LK+ V GMRN MAIAP Sbjct: 617 PAFPGSDWQTGAYF--------ERRGYESHGE---LDWDRLKQDVARYGMRNGYIMAIAP 665 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 A+ + I G + SIDP + +Y + V +L ++ W Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 709 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K+L Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912 ++ AW GLKTTYY+RS S T E Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGTIDE 779 >gi|297530898|ref|YP_003672173.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus sp. C56-T3] gi|297254150|gb|ADI27596.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. C56-T3] Length = 785 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 261/802 (32%), Positives = 389/802 (48%), Gaps = 92/802 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201 K+ I+ D G +SF+ + ++ +A +G +S + ++ + + ++ L Sbjct: 31 KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90 Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 I + I E EP++ V AR L +L RE + E + Sbjct: 91 AILEGLSYIDEDEPDWTFVCARLYLRQLYREAARQRGYDER-----ERYGDFYSLLVALT 145 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 E+GV + L E ++ + L E+D F Y+GL+ L DRY E+PQ Sbjct: 146 EQGVYSPFLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYELPQE 205 Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +AM L E + + E Y LS+ + +TPTL N+G + QLSSCF+ TV Sbjct: 206 RFLVIAMTLMANEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 265 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+ Sbjct: 266 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 325 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++V Q Sbjct: 326 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 385 Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547 W LF P EV + ++ F Y + + K + A+ + + Sbjct: 386 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSKEK----VPAIEVMK 441 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595 ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501 Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + LA I +R+LDNVID+N + +A Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E+G+Y Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F GS W G + E R + L WD LK+ V GMRN MAIAP Sbjct: 617 PAFPGSDWQTGAYF--------ERRGYESHGE---LDWDRLKQDVARYGMRNGYIMAIAP 665 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 A+ + I G + SIDP + +Y + V +L ++ W Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 709 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K+L Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754 Query: 888 IYRQAWLMGLKTTYYLRSRSAT 909 ++ AW GLKTTYY+RS S T Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGT 776 >gi|160881348|ref|YP_001560316.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium phytofermentans ISDg] gi|160430014|gb|ABX43577.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium phytofermentans ISDg] Length = 764 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 243/818 (29%), Positives = 387/818 (47%), Gaps = 110/818 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I + T ++ + ++ AC GL+ + + DG+S +++ L+ Sbjct: 2 DIMIKKRNQTYEPLCVEKTKRMIAFACEGLEGCDPIELELDARIQFVDGMSTKEIQKMLV 61 Query: 204 FSSRT-------------LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 ++ + E N+ V AR + L +E ++ H Sbjct: 62 QTAIEKVIHTKKDEFGNIMRETHTNWQYVAARLFVFDLYKEA------AIERHYKHFGYG 115 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI- 309 + +EE + L ++ ++ L +K ERD+ F Y G+++L DRY + Sbjct: 116 DFLNLVNSLVEEELYGSYLTDAYTQLEIKELGAYIKPERDYLFNYEGVKLLSDRYLVKGL 175 Query: 310 NGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 E+PQ FM +AM LA+ E + + + A +FY+LLSS +TPTL N+GT Q Sbjct: 176 KKEVFELPQERFMVIAMHLAIPEEKAKRMEYAKKFYDLLSSLQMTVATPTLANAGTPFYQ 235 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF++ V D+L+ I+ Q+ + ++K+ G LG +R L + I G S GVIP+ Sbjct: 236 LSSCFISVVGDNLWSIYDVNQKFSSVSKHGGALGIYVGKIRALNSEIRGNKNASGGVIPW 295 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +++ NDTA+AV+Q G+RKG L+ WH D+ +FLDL+ N GDDRR+ HD+ TA +P+ Sbjct: 296 VRLYNDTAIAVDQLGRRKGGATITLDIWHADLYDFLDLKTNNGDDRRKAHDIFTALSVPN 355 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLH---------DLYGKEFEIAYENYERQADRGEIKVFR 538 LFM+R+ + W+LF P V+ + ++ EF Y E + I Sbjct: 356 LFMERLERREEWSLFDPYLVNKVMGFSLEDSYDEVAENEFTKRYLACEECKELPRI---- 411 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-- 596 + A+ + ++++ ETG P+I F+D N +P +H G+++SSNLC EIT N S E Sbjct: 412 TVPALEVMKRIMKSAVETGAPFIFFRDTVNQANPNKHAGMIYSSNLCQEITQNMSESELR 471 Query: 597 ---------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 CNL SI+L LA I +R+LDNV Sbjct: 472 EELIQDESGAKVIITKIKPGDMVTCNLNSISLGRIEK------KDLAVNIPLQIRMLDNV 525 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 I +N + +A+ ++ +RAIGLG G+ L I + + + +E AD+ E I++ AI Sbjct: 526 ITLNQTPVAEARITSDKYRAIGLGTSGYHHYLVNHGIGWETQKHLEEADDLFEEIAYQAI 585 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS+ELA+E+G Y +F GS W+ G + + W L K V Sbjct: 586 KASMELAKEKGKYEAFHGSEWETG--------------EYFKRRDYTSDRWLALSKEVAE 631 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 GMRN A+APT + +NI S IDP ++ +++ G F +L + Sbjct: 632 HGMRNGYITAVAPTGSTSNIANTSAGIDPIFKRYFIEE-KKGSFI---PKTAPDLNTSNF 687 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 W ++ A ID + I + RQ+ IDQ+QS NL Sbjct: 688 W---------------------------LYKEAHTIDQQFSIRACGIRQRHIDQSQSFNL 720 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Y+ E + +Y +AW GLKT YY+R++S E Sbjct: 721 YITPEYKAIDILNLYMEAWRKGLKTIYYVRNQSLEMDE 758 >gi|56419446|ref|YP_146764.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus kaustophilus HTA426] gi|56379288|dbj|BAD75196.1| ribonucleoside-diphosphate reductase alpha subunit [Geobacillus kaustophilus HTA426] Length = 785 Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 262/805 (32%), Positives = 392/805 (48%), Gaps = 92/805 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201 K+ I+ D G +SF+ + ++ +A +G +S + ++ + + ++ L Sbjct: 31 KMIIIDDQGKPVSFSREEFASLIGQAVAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 90 Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 I + I E EP++ V AR L++L RE + E + Sbjct: 91 AILEGLSYIDEDEPDWTFVCARLYLQQLYREAARQRGYDAR-----ERYGDFYSLIVSLT 145 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 E+GV + LL E ++ + L +D F Y+GL+ L DRY E+PQ Sbjct: 146 EQGVYSPLLLERYTKEEIETAGSFLDPGKDLLFTYIGLRTLADRYLARDYERRLYELPQE 205 Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +AM L + E + + E Y LS+ + +TPTL N+G + QLSSCF+ TV Sbjct: 206 RFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 265 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+ Sbjct: 266 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 325 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++V Q Sbjct: 326 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 385 Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547 W LF P EV + ++ F Y + + K + A+ + + Sbjct: 386 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNEPRLSKEK----VPAIEVMK 441 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595 ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 442 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 501 Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + LA I +R+LDNVID+N + +A Sbjct: 502 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 556 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E+G+Y Sbjct: 557 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 616 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F GS W G + E R + L WD LK+ V GMRN MAIAP Sbjct: 617 PAFPGSDWQTGAYF--------ERRGYQSHGE---LDWDRLKQDVARYGMRNGYIMAIAP 665 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 A+ + I G + SIDP + +Y + V +L ++ W Sbjct: 666 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 709 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K+L Sbjct: 710 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 754 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912 ++ AW GLKTTYY+RS S T E Sbjct: 755 LHLTAWKSGLKTTYYVRSTSGTIDE 779 >gi|261419129|ref|YP_003252811.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp. Y412MC61] gi|261375586|gb|ACX78329.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. Y412MC61] Length = 760 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 263/805 (32%), Positives = 393/805 (48%), Gaps = 92/805 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETA 201 K+ I+ D G +SF+ + ++ +A +G +S + ++ + + ++ L Sbjct: 6 KMIIIDDQGKPVSFSREEFASLIGQAAAGFGRLSLDEYVERVWQLLSRKESVTVEQLHQT 65 Query: 202 LIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 I + I E EP++ V AR L +L RE + E + Sbjct: 66 AILEGLSYIDEDEPDWTFVCARLYLRQLYREAARQRGYDER-----ERYGDFYSLLVALT 120 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 E+GV + LL E ++ + L E+D F Y+GL+ L DRY E+PQ Sbjct: 121 EQGVYSPLLLERYTKEEIDAIGAFLDPEKDKLFTYIGLRTLADRYLARDYERRLYELPQE 180 Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F+ +AM L + E + + E Y LS+ + +TPTL N+G + QLSSCF+ TV Sbjct: 181 RFLVIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVD 240 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+ Sbjct: 241 DSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVS 300 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++V Q Sbjct: 301 VDQLGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRG 360 Query: 498 GWTLFSPDEVSDLHDLYGKE----------FEIAYENYERQADRGEIKVFRKISAVALWR 547 W LF P EV + ++ F Y ++ + K + A+ + + Sbjct: 361 DWYLFDPHEVRKVMGFSLEDFYDEEKGCGSFREKYWQCVNESRLSKEK----VPAIEVMK 416 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595 ++ E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 417 SIMRSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVMKRQYVKDGMI 476 Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + LA I +R+LDNVID+N + +A Sbjct: 477 IIEKIPGDFVVCNLSSINLARAVTDGV-----LARLIPIQMRMLDNVIDLNNIPVLQAGL 531 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RA+GLG G+ L L I + S EAV ADE E I++ AI AS+ELA+E+G+Y Sbjct: 532 TNEKYRAVGLGTFGWHHLLALKGIRWESEEAVRYADELYETIAYLAIQASMELAKEKGSY 591 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 +F GS W G + E R + L WD LK+ V GMRN MAIAP Sbjct: 592 PAFPGSDWQTGAYF--------ERRGYESHGE---LDWDRLKQDVARYGMRNGYIMAIAP 640 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 A+ + I G + SIDP + +Y + V +L ++ W Sbjct: 641 NASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNEQTTW------------ 684 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDF 887 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K+L Sbjct: 685 ---------------YYKSAYHIDQRWSIKQNAARQRHIDQAISFNFYVMNTIKAKELLD 729 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912 ++ AW GLKTTYY+RS S T E Sbjct: 730 LHLTAWKSGLKTTYYVRSTSGTIDE 754 >gi|292490775|ref|YP_003526214.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] gi|291579370|gb|ADE13827.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] Length = 1695 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 235/433 (54%), Positives = 304/433 (70%), Gaps = 3/433 (0%) Query: 8 NKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIR 67 + E P++ P + +VI+RNG VT FDPSKI+ A+ KAF+AVEG A+ S R Sbjct: 8 SPDSESLDPTVRATAPGQ---YRVIRRNGKVTGFDPSKIAVAMTKAFLAVEGGSAATSKR 64 Query: 68 VQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSD 127 + ++ LT Q V + ++ VHIEDIQDQVE +LM+ G+HKI R YVLYREER+ Sbjct: 65 IHQTVEALTAQVVEACTRRLETGGTVHIEDIQDQVELALMRGGYHKIARAYVLYREERTR 124 Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYK 187 RA + P L++ + DG ++ + RL I+EEAC L + + +L+ET + Sbjct: 125 ERAQAAAKTKKKAAEPPLQMTLADGRVVPLDKARLTRIIEEACQALPETQPQTILNETLR 184 Query: 188 NMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 N++DG++E D+E ALI S+RT IEKEP+Y+ V AR LL+ LRRE L+ ++ AT E Sbjct: 185 NLFDGVAEQDVERALIMSARTFIEKEPHYSYVAARLLLDSLRREALSFIHGAETHATQGE 244 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 M YPEYF YI++G +L+ + +DL L L+ ERDF F YLGLQ LYDRYF+ Sbjct: 245 MAERYPEYFAAYIKQGADLQLIDPRLTQYDLTRLGQALRPERDFEFTYLGLQTLYDRYFI 304 Query: 308 HINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 H G R E+PQAFFMRVAMGLA+ E E+E+R +EFY LLSSF FM STPTLFNSG+ PQ Sbjct: 305 HSGGIRFELPQAFFMRVAMGLAINEVEREERTIEFYELLSSFDFMSSTPTLFNSGSLRPQ 364 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSC+LTTV DDL GI+ A+++NA+L+KY+GGLGNDWT VRG+GAHI GTNGKSQGV+PF Sbjct: 365 LSSCYLTTVADDLDGIYSAIKDNALLSKYAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPF 424 Query: 428 LKVANDTAVAVNQ 440 LKVANDTAVAVNQ Sbjct: 425 LKVANDTAVAVNQ 437 Score = 403 bits (1034), Expect = e-109, Method: Composition-based stats. Identities = 225/371 (60%), Positives = 277/371 (74%), Gaps = 1/371 (0%) Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 TEITLN+S +E AVCNLGSINL H N + KL TI TA+R+LDNVID N +++ Sbjct: 1325 NTEITLNTSDDEIAVCNLGSINLPQHLDENGLNLPKLEKTITTAMRMLDNVIDYNYYSVP 1384 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 A++SN HR +GLGLMGFQ AL+ L +PYAS AVE AD SME IS++AI AS LA E Sbjct: 1385 TARRSNLRHRPVGLGLMGFQDALYKLRLPYASEAAVEFADRSMEAISYYAIKASSNLAGE 1444 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 RG Y +F+GSLW +G+ PIDSIGLL + R L +RT L WD L+++VKT+GMRNSNC Sbjct: 1445 RGKYCTFEGSLWSKGILPIDSIGLLEQGRGGYLQQDRTQTLDWDGLREQVKTVGMRNSNC 1504 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 MAIAPTATI+NICGVSQSI+P+YQNL+VKSN+SG+FTV+N +LV +LK RDLWDE M++D Sbjct: 1505 MAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVINPYLVQDLKARDLWDEVMVND 1564 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 LKY DGS+ I+RIP+DLK ++ATAFEIDP WL+E+ASRRQKW+DQAQSLNLY+ EPSGK Sbjct: 1565 LKYFDGSVQPIDRIPEDLKTLYATAFEIDPRWLVEAASRRQKWLDQAQSLNLYMAEPSGK 1624 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 KLD +Y+ AW+ GLKTTYYLRS AT VEKST+ + S + Sbjct: 1625 KLDNLYKLAWVRGLKTTYYLRSLGATHVEKSTMTSDQVNTLNAVQSGSPQEPESEAPQAC 1684 Query: 944 CTSDTECEVCQ 954 D +CE CQ Sbjct: 1685 SILDPDCEACQ 1695 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 120/154 (77%), Positives = 131/154 (85%) Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 TA V+ GGKRKGAVCAYLETWHID+EEFL+LRKNTGDDRRRTHDMNTANW+PDLFMKR Sbjct: 808 TTAALVHNGGKRKGAVCAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKR 867 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ WTLFSPDE DLHDL G+ FE AY YE +A GEIK F+K AV LWRKML+M Sbjct: 868 VAEDGEWTLFSPDETPDLHDLVGQAFEEAYLRYEEKAACGEIKNFKKQRAVDLWRKMLSM 927 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 LFETGHPWITFKDPCN+RSPQQH GVVHSSNLC Sbjct: 928 LFETGHPWITFKDPCNLRSPQQHAGVVHSSNLCC 961 >gi|159041217|ref|YP_001540469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caldivirga maquilingensis IC-167] gi|157920052|gb|ABW01479.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caldivirga maquilingensis IC-167] Length = 877 Score = 475 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 221/877 (25%), Positives = 371/877 (42%), Gaps = 86/877 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD--GLSESDLETA 201 + ++ +G FN +L ++ A + + + +L E + ++ S++ + Sbjct: 11 MITVIKRNGLREEFNPVKLLNSLKLAGA----PNPERILEEVTSQIKGKGEVTSSEISDS 66 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + LI ++ + +LL + ++ K + + Y + Sbjct: 67 VQLMMLNLISEDFKWHDAARNYLLFSIYKQAWGKEVVKSINSGSLTLSEAYRRGLRDWFN 126 Query: 262 EGVKARLLHESMMDF---DLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMP 317 +G+ L F L L N L RD Y G++ L RY + +GS E P Sbjct: 127 QGLNQGLWSLDAAKFYEKHLDELMNKLDPSRDLLLTYNGVRTLMSRYLMKRLDGSFFETP 186 Query: 318 QAFFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 Q +MR+AMG+A E + K +FY+L+S F+ ++PT+FN+ T+ +LS+CF+ Sbjct: 187 QYMWMRIAMGVAYSEVKYGNDPIKWVEKFYDLVSQLKFLPNSPTMFNALTKLGELSACFV 246 Query: 374 TTVPDD------------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 V D +GI A + A+L + G+G + +R G + T+G + Sbjct: 247 IPVDDCLSKDSNRDNPNCFFGIMDAAKLAALLFQAGAGVGYQFGELRPEGDVVKSTSGVA 306 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + F+++ + + QGGKR+GA L WH D+E+F+ + D + + N Sbjct: 307 SGPLSFMRLFDTLVDVIKQGGKRRGAQMGMLFWWHPDIEKFITSKTGRLKDV-QLQNFNI 365 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + I D FM + + L +P E + L+ +G+EF YE + G +KV+R+++ Sbjct: 366 SVTIDDYFMTKALRGEDVYLLNPRECTCLYQTWGQEFIKCYEECVSKVKAGLVKVWRRVN 425 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV------GVVHSSNLCTEITLNSSSE 595 A LW K++ +++G P + +D N++ + V++ +N C E+ L Sbjct: 426 AGELWSKIVESAWDSGDPGLWNRDVANMKIEYVNDVVSEKYRVINGTNPCGEVALYPF-- 483 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNLGSINL + N D+ LA+ I AVR LD+VID N H E ++N R Sbjct: 484 --ESCNLGSINLTKYINGNSIDWVSLANDIMLAVRFLDDVIDSNQHPHEYLDRANKASRR 541 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+ G+ L L IPY SP+A+ +AD M F++ A+ ASVELA+E+G + + S Sbjct: 542 IGLGINGWADVLVSLDIPYDSPKAIALADVVMGFVARVAVRASVELAKEKGPFPLWPSSK 601 Query: 716 WDQGVFPIDSIG-----LLAEVRDELAMNRT------------------------SRLPW 746 W G P +L + R Sbjct: 602 WRSGFLPWRVHDERVSKMLEVKGVSSDVEEYLEILKLGYGELGGLPNKAEEYLAKLRATD 661 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 DEL K T+G+RN ++IAP + + I GV+ SI+P + YV++ G N Sbjct: 662 DELIKDASTVGVRNGALISIAPEGSRSLIAGVNSSIEPIFAIAYVRNLSIGKLIEYNYTA 721 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL--KKIHATAFEIDPMWLIESASRRQ 864 + +LK + D S + +P + + TA EI W + Sbjct: 722 LRKLKDSNALDNETTSKVLESG-------MLPSNHVMHPVLKTANEIHWRWHVFMQVTFA 774 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 KW D S + + + + ++ YR AW +G R +S T GK Sbjct: 775 KWSDSGVSKTINMPSNATKEDVNGAYRLAWALGAFGITVYRDKSKAVQVIYTGVEGKGKA 834 Query: 924 NAVPVTD----------PNSSTHSLGIPSSCTSDTEC 950 + + T D C Sbjct: 835 QSTESKAIKVTVKAINLNRDIEENKLAEIGETDDPAC 871 Score = 41.0 bits (94), Expect = 0.91, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 23/96 (23%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 VIKRNG F+P K+ ++ A GA R+ ++ +T Q K Sbjct: 14 VIKRNGLREEFNPVKLLNSLKLA-------GAPNPERI---LEEVTSQI--------KGK 55 Query: 91 LIVHIEDIQDQVECS---LMQSGH--HKITREYVLY 121 V +I D V+ L+ H R Y+L+ Sbjct: 56 GEVTSSEISDSVQLMMLNLISEDFKWHDAARNYLLF 91 >gi|239826136|ref|YP_002948760.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus sp. WCH70] gi|239806429|gb|ACS23494.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. WCH70] Length = 761 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 259/810 (31%), Positives = 387/810 (47%), Gaps = 92/810 (11%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSES 196 A + I ++G F+ +RL + + + + + + D LS Sbjct: 2 ELQANTIIITSENGQTKPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSAE 61 Query: 197 DLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 + LI + I + EP + V A L+KL +E ++ E Sbjct: 62 QITNYLILEGLSYISEAEPEWTFVCAHIYLQKLYKEAAKQRGYDAKQ-----RYGSLYEL 116 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 + +GV R L ++ ++ L + ++D F Y+GL+ L DRY + + Sbjct: 117 ITTLVSKGVYDRSLLDNYSKEEINELGKLIDPDKDKLFTYIGLRTLADRYLARDYDRNLY 176 Query: 315 EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E+PQ F+ +AM L KE + E Y LS+ + +TPTL N+G + QLSSCF Sbjct: 177 ELPQERFLIIAMTLMAKEPKHRRFTFIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCF 236 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + TV D L GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N Sbjct: 237 IDTVDDSLQGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLN 296 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 +TAV+V+Q G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD+ T IPDLFM++ Sbjct: 297 NTAVSVDQLGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQ 356 Query: 493 VTQNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 V + W LF P EV + F Y ++ + K + A Sbjct: 357 VEKRGDWYLFDPHEVRKVMGFSLEDFYDEEKGSGSFREKYWQCVQEERLSKEK----VPA 412 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595 + + + ++ E+G P++ ++D N ++P H+G+++ SNLCTEI N S Sbjct: 413 IEIMKSIMRSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTVVEKQYT 472 Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + VCNL SINL + D L I +R+LDNVID+N + Sbjct: 473 KDGKIIIEKIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNNIPV 527 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +AK +N +RA+GLG G+ L L I + S EAVE AD+ E I++ AI AS+ELA+ Sbjct: 528 LQAKFTNQKYRAVGLGTFGWHHLLALKGIRWESDEAVEYADKLYEKIAYLAIKASMELAK 587 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G+Y +F GS W G + + R RT WD LK++V GMRN Sbjct: 588 EKGSYPAFPGSDWQTGAYF--------DKRGYH---RTEEFDWDALKEQVAKHGMRNGYV 636 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 MAIAP A+ + I G + SIDP + +Y + V +L W Sbjct: 637 MAIAPNASTSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNAETTW------- 685 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSG 882 + +A+ ID W I+ + RQ+ IDQA S N Y L+ Sbjct: 686 --------------------YYKSAYHIDQHWSIKQNAARQRHIDQAISFNFYVLNTIKA 725 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 K+L ++ AW GLKTTYY+RS S+T E Sbjct: 726 KELLDLHLTAWKSGLKTTYYVRSTSSTIDE 755 >gi|328722126|ref|XP_003247490.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 767 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 199/781 (25%), Positives = 338/781 (43%), Gaps = 51/781 (6%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESD 197 A + L + DGT+ + + +++ C GL+ + K +Y G++ S Sbjct: 2 AELKKHLHVQKRDGTIEKVHYDAITARIKQLCYGLEKIDPAATAIHVIKKFLYAGITTSQ 61 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A ++ T+ P+Y K+ AR + L ++ Sbjct: 62 LDDAAAETAITMATIHPDYEKLAARIAISNLHKQTKEKFSDVIDDI------------HK 109 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 Y + ++ L + YE D+ +Y G + L + + IE P Sbjct: 110 NYNYWNIGLSDDIYEIIMKHKDRLNEAINYENDYILDYFGFKYLIQHFLVKSENQTIERP 169 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN----SGTRHPQLSSCFL 373 Q FM+VA+G+ + A+E Y +LS +P + + + + S + Sbjct: 170 QHLFMKVAVGIHGDD---IDSAIETYKMLSQK-LCMFSPVVMQLQPAARKLNVSVISHYS 225 Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + D + GI+ + + +R G +I G+ G+S G+ LK + Sbjct: 226 VAMIADSIDGIYDTSIRLSSFILPYSSVALHVHKIRAAGTYIQGSYGESSGLPLMLKQYD 285 Query: 433 DTAVAVNQGGKRK--GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + K V Y E WH D+ + +D + T + + A WIPD FM Sbjct: 286 SIVRNSETLERPKSIKGVTIYCELWHADIMKVIDQIRMTSIADIKLKNCQLALWIPDEFM 345 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV + W+ SPD L D++GKEF+ Y+ YE + + V R+I A LW +++ Sbjct: 346 RRVQNDQMWSFMSPDHCPGLIDVHGKEFDNLYKEYE---LKSKSFVMRQIEAKKLWSQII 402 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P + FKD CN +S + H+G + + + ++S+E A C SI++ Sbjct: 403 QSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMF 462 Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINC------HTIEKAKKSNHTHRAIGLGLMGF 663 + N FD+ KL T + L+ +ID N +E K N AIG+G+ G Sbjct: 463 LTSENIFDFSKLKETAKKLTYDLNKIIDNNNVILNKEKQLELGLKQNQW--AIGIGVQGL 520 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 + P+ + EA + + E I + A+ AS ELA G Y +F S +G+ Sbjct: 521 ADLFIKMKYPFDNKEARVLNTQIHESIYYGALEASCELATTNGPYKTFPNSPTSKGLLQF 580 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + ++ W+ LK ++ G+RNS + T + ICG SI+ Sbjct: 581 DLWN----------VKPSNLWDWNNLKTKITQHGLRNSLVTVTSNTEVESTICGKVNSIE 630 Query: 784 PSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 P N+ + G+ VVN L+ +L R LWD+ + L + GS+ I+ +P Sbjct: 631 PLDTNVKRRYISLGESKPKEIQVVNPHLLKDLHDRKLWDDNLKYQLMNNMGSVQEIKGLP 690 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLK 898 +DLK+++ T +EID LI A+ R +IDQ+Q+ +L + + + + W MGLK Sbjct: 691 EDLKQLYKTKWEIDQKDLIIMAADRAPFIDQSQAFSLNMVKADEDIISEMLISTWKMGLK 750 Query: 899 T 899 T Sbjct: 751 T 751 >gi|302386032|ref|YP_003821854.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium saccharolyticum WM1] gi|302196660|gb|ADL04231.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium saccharolyticum WM1] Length = 752 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 242/800 (30%), Positives = 378/800 (47%), Gaps = 100/800 (12%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L+ + G L + A L+ +S K ++ + A Sbjct: 8 QEILESFKELGELEEV-LDGIRQEWGSASYDLKHLSIKFTGF-----CKKNMNLEERLGA 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI ++ L +E P++ + AR L+ + + + ++ + ++ L Sbjct: 62 LIQAAVELTTQEAPDWEYIGARLLMVRFNIRLKEELGRRKIGSFFDKICFL--------T 113 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 EEG+ + E+ ++ + R+ F Y GL++L +RY + + +E PQ Sbjct: 114 EEGLYGDYILENYNKEEIQRFEGYMDQTRNHLFNYSGLELLLNRYVIRSHQNAPLETPQE 173 Query: 320 FFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ +AM LA+ ET ++E FY++LS+ +TPTL N+ + QLSSCF+ TVPD Sbjct: 174 MFLGIAMHLAMNETVDREAWVKRFYHMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPD 233 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ ++ A ++K+ GG+G + VR G+ I G G + GV+ ++K+ANDTAVAV Sbjct: 234 SLDGIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVVRWIKLANDTAVAV 293 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-- 496 +Q G R+GAV YL+ WH D+ EFL L+ N GDDR + HD+ P+LF K+ +N Sbjct: 294 DQLGMRQGAVAVYLDVWHKDLPEFLTLKTNNGDDRMKAHDVFPGVCYPNLFWKQAKENIE 353 Query: 497 AGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 W L P E+ + D YG ++E Y + + + R I + R +L Sbjct: 354 GDWYLMCPHEILTVKGWALEDFYGIQWEERYLDCVSDSRIHK----RIIPIKDIIRLVLK 409 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------- 596 ETG P+ +D N +P H G+++ SNLCTEI N S+ E Sbjct: 410 SAVETGTPFTFNRDIVNEANPNSHCGMIYCSNLCTEIAQNMSTVEQLEQQIRWVDGETVV 469 Query: 597 --------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 VCNL S++L + D +LA R+AVR LDNVID+N I AK Sbjct: 470 VTVTKPGDFVVCNLASLSLGKI---DLTDTQELAELTRSAVRALDNVIDLNFFPIPYAKV 526 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +R +GLG+ G+ L I + S E +E +D E I++ AI AS + A+E+G Y Sbjct: 527 TNLRYRPVGLGVSGYHHMLAKNGISWESQEHLEFSDRVFEAINYAAIQASCDFAREKGRY 586 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+GS W G W L+++V GMRN +AIAP Sbjct: 587 DLFEGSQWQTG--------------AYFDKRGYCSEKWKSLREKVAAYGMRNGWLLAIAP 632 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ + I G + +DP Y++ SG V +L W Sbjct: 633 TSSTSMIAGTTAGLDPVLNRYYLEEKKSGLVPRVAP----DLSPETFW------------ 676 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 + A ID W + +A RQ+ +DQAQS+NLY+ ++ + +++ Sbjct: 677 ---------------KYKNAHYIDQKWSVRAAGVRQRHVDQAQSMNLYITNDYTLRQVLG 721 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 +Y AW G+KT YY+RSRS Sbjct: 722 LYILAWECGVKTIYYIRSRS 741 >gi|312112172|ref|YP_003990488.1| ribonucleoside-diphosphate reductase, subunit alpha [Geobacillus sp. Y4.1MC1] gi|311217273|gb|ADP75877.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 761 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 256/797 (32%), Positives = 383/797 (48%), Gaps = 92/797 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204 I +++G F+ +RL + + + + + + D LS + LI Sbjct: 10 ITLENGQTEPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSTEQITNYLIL 69 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I E EP + V AR L+KL +E + ++ LY + +G Sbjct: 70 EGLSYISETEPEWTFVCARIYLQKLYKEAAKQRGYEAKQRY----GSLYA-LITALVSKG 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 V + L ++ L + ++D F Y+GL+ L DRY + + E+PQ F+ Sbjct: 125 VYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYLARDYHRNLYELPQERFL 184 Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +AM L KE + E Y LS+ + +TPTL N+G + QLSSCF+ TV D L Sbjct: 185 IIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVDDSL 244 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+V+Q Sbjct: 245 QGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVSVDQ 304 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD+ T IPDLFM++V + W Sbjct: 305 LGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQVEKRGDWY 364 Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 LF P EV + F Y ++ + K + A+ + + ++ Sbjct: 365 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVQEERLSKEK----VPAIEIMKSIM 420 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595 E+G P++ ++D N ++P H+G+++ SNLCTEI N S Sbjct: 421 RSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTIVEKQYTKDGKIIIE 480 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + VCNL SINL + D L I +R+LDNVID+N + +A+ +N Sbjct: 481 KIPGDFVVCNLSSINLARAVTD-----DVLERLISIQMRMLDNVIDLNHIPVLQAQLTNQ 535 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +RA+GLG G+ L L I + S EAVE AD+ E I++ AI +S+ELA+E+G+Y +F Sbjct: 536 KYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAYLAIRSSMELAKEKGSYPAF 595 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS W G + E R R WD LKK+V GMRN MAIAP A+ Sbjct: 596 PGSDWQTGAYF--------EKRGY---RRNDNADWDTLKKQVAKYGMRNGYLMAIAPNAS 644 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + SIDP + +Y + V +L W Sbjct: 645 TSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNAETTW--------------- 685 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K+L ++ Sbjct: 686 ------------YYKSAYHIDQHWSIKQNAVRQRHIDQAISFNFYVMNTIKAKELLDLHL 733 Query: 891 QAWLMGLKTTYYLRSRS 907 AW GLKTTYY+RS S Sbjct: 734 TAWKAGLKTTYYVRSTS 750 >gi|295401052|ref|ZP_06811026.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294976845|gb|EFG52449.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 761 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 256/797 (32%), Positives = 383/797 (48%), Gaps = 92/797 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204 I +++G F+ +RL + + + + + + D LS + LI Sbjct: 10 ITLENGQTEPFSRERLISFIRNITKDYPHLQTDDYMERIIRIIESKDTLSTEQITNYLIL 69 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I E EP + V AR L+KL +E + ++ LY + +G Sbjct: 70 EGLSYISETEPEWTFVCARIYLQKLYKEAAKQRGYEAKQRY----GSLYA-LITALVSKG 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 V + L ++ L + ++D F Y+GL+ L DRY + + E+PQ F+ Sbjct: 125 VYSSSLLNDYSKEEIDELEKLIDPDKDKLFTYIGLRTLADRYLARDYHRNLYELPQERFL 184 Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +AM L KE + E Y LS+ + +TPTL N+G + QLSSCF+ TV D L Sbjct: 185 IIAMTLMAKEPKHRRFALIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVDDSL 244 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+V+Q Sbjct: 245 QGIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVSVDQ 304 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD+ T IPDLFM++V + W Sbjct: 305 LGQRKGAISVYLDVWHKDIFAFLDAKLNNGDERMRTHDLFTGVCIPDLFMEQVEKRGDWY 364 Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 LF P EV + F Y ++ + K + A+ + + ++ Sbjct: 365 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVQEERLSKEK----VPAIEIMKSIM 420 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595 E+G P++ ++D N ++P H+G+++ SNLCTEI N S Sbjct: 421 RSQLESGTPFMFYRDEVNRKNPNAHLGMIYCSNLCTEIAQNQSPTIVEKQYTKDGKIIIE 480 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + VCNL SINL + D L I +R+LDNVID+N + +A+ +N Sbjct: 481 KIPGDFVVCNLSSINLARAVTD-----DVLERLIPIQMRMLDNVIDLNHIPVLQAQLTNQ 535 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +RA+GLG G+ L L I + S EAVE AD+ E I++ AI +S+ELA+E+G+Y +F Sbjct: 536 KYRAVGLGTFGWHHLLALKGIRWESAEAVEYADKLYEKIAYLAIRSSMELAKEKGSYPAF 595 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS W G + E R R WD LKK+V GMRN MAIAP A+ Sbjct: 596 PGSDWQTGAYF--------EKRGY---RRNDNADWDTLKKQVAKYGMRNGYLMAIAPNAS 644 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + SIDP + +Y + V +L W Sbjct: 645 TSIIAGSTASIDPIFLKVYAEEKKDYKIPVTVP----DLNAETTW--------------- 685 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890 + +A+ ID W I+ + RQ+ IDQA S N Y ++ K+L ++ Sbjct: 686 ------------YYKSAYHIDQHWSIKQNAVRQRHIDQAISFNFYVVNTIKAKELLDLHL 733 Query: 891 QAWLMGLKTTYYLRSRS 907 AW GLKTTYY+RS S Sbjct: 734 TAWKAGLKTTYYVRSTS 750 >gi|329928245|ref|ZP_08282156.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. HGF5] gi|328937963|gb|EGG34364.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. HGF5] Length = 792 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 242/807 (29%), Positives = 384/807 (47%), Gaps = 87/807 (10%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205 ++ + ++F+ RL + + GL + + +L + + ++ ++ +A S Sbjct: 20 VVKPNNRQLAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 79 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L+ KE PN+ AR L L ++ T + KA E + +++G+ Sbjct: 80 ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 136 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 L S + L + RD F+Y+GL L +RY + +G +E+PQ +M Sbjct: 137 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMV 196 Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 +AM L E ++ E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 197 IAMFLMHNEPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 256 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 257 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 316 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W+ Sbjct: 317 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWS 376 Query: 501 LFSPDEVSDLHDL-----YGKEFEIAYEN---------YERQADRGEIKVFRKISAVALW 546 LF P EV + E Y++ +A + + A+ + Sbjct: 377 LFCPHEVKKIMGWKDENGRPLGLEDFYDHTQGEGEFRQKYAEAVANPLLPRITVQAIDIM 436 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595 ++++ ETG P++ ++D N +P G+++SSNLCTEI N S Sbjct: 437 KRIMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 496 Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + VCNL SI+L L + VR+LDNVIDIN + Sbjct: 497 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 551 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A+ +N +RA+GLG G L L I + S EAV D E I++ + +S+ELA+ Sbjct: 552 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 611 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G Y FKGS W+ G + E + + W EL++ V+ G+RN+ Sbjct: 612 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 667 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAP + + I G + SIDP Y+ L + + V N +L ++ +W Sbjct: 668 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKVANP--APDLSEKTIW------- 716 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 + TAF ID W I+ A+ RQ+ +DQAQS NLY+ + Sbjct: 717 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 756 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + ++ AW G+K+TYY+RSR+ T Sbjct: 757 SEFLELHLHAWKAGIKSTYYVRSRALT 783 >gi|12002837|gb|AAG43397.1|AF168794_1 ribonucleotide reductase subunit M1 [Xenopus laevis] Length = 520 Score = 472 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 214/535 (40%), Positives = 324/535 (60%), Gaps = 18/535 (3%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGL 400 YNLLS F ++PTLFN+GT PQLSSCFL + DD + GI+ L++ A+++K +GG+ Sbjct: 1 TYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCALISKSAGGI 60 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDV 459 G + +R G++I GTNG S G++P L+V N+TA V+QG KR GA YLE WH DV Sbjct: 61 GVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHYDV 120 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +FLDL+KNTG + +R D+ A WIPDLFMKRV N W+L P E L +++G +FE Sbjct: 121 FDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMCPHECPGLEEVWGDKFE 180 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 YE YER E + + + A +W ++ ETG P++ +KD CN +S QQ++G + Sbjct: 181 ELYEKYER-----EGRARKVVKAQQVWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTI 235 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDI 638 SNLCTEI +S +E AVCNL S+ L + + FD+ KLA + V+ L+ +I+I Sbjct: 236 KCSNLCTEIVEYTSEKEVAVCNLASLALNMYVTSERSFDFKKLADVTKVIVKNLNKIIEI 295 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + +A+ SN HR IG+G+ G A L+ P+ S +A + + E I + A+ +S Sbjct: 296 NFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFQSEKAQMLNKQIFETIYYAALESS 355 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 ELA+E G Y +++G +G+ D + T W LK+++ G+ Sbjct: 356 CELAKELGPYETYEGCPVSKGILQYDMWNVTP----------TDLWDWTALKEKIAKYGI 405 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RNS +A PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L ++ LW+E Sbjct: 406 RNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLWNE 465 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 M + + ++GSI N+ IP +LK+++ T +EI +I A+ R +IDQ+QSL Sbjct: 466 EMKNQIIANNGSIQNVPDIPAELKELYKTVWEISQKTVITMAADRGAFIDQSQSL 520 >gi|261404532|ref|YP_003240773.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus sp. Y412MC10] gi|261280995|gb|ACX62966.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. Y412MC10] Length = 777 Score = 472 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 242/807 (29%), Positives = 384/807 (47%), Gaps = 87/807 (10%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205 ++ + ++F+ RL + + GL + + +L + + ++ ++ +A S Sbjct: 5 VVKPNNRQLAFDEIRLSVYADRTLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 64 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L+ KE PN+ AR L L ++ T + KA E + +++G+ Sbjct: 65 ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 121 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 L S + L + RD F+Y+GL L +RY + +G +E+PQ +M Sbjct: 122 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLANDFDGRVMELPQERYMV 181 Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 +AM L E ++ E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 182 IAMFLMHNEPADKRLDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 242 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W+ Sbjct: 302 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEAREEWS 361 Query: 501 LFSPDEVSDLHDL-----YGKEFEIAYEN---------YERQADRGEIKVFRKISAVALW 546 LF P EV + E Y++ +A + + A+ + Sbjct: 362 LFCPHEVKKIMGWKDENGRPLGLEDFYDHTQGEGEFRQKYAEAVANPLLPRITVQAIDIM 421 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595 ++++ ETG P++ ++D N +P G+++SSNLCTEI N S Sbjct: 422 KRIMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 481 Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + VCNL SI+L L + VR+LDNVIDIN + Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 536 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A+ +N +RA+GLG G L L I + S EAV D E I++ + +S+ELA+ Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 596 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G Y FKGS W+ G + E + + W EL++ V+ G+RN+ Sbjct: 597 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 652 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAP + + I G + SIDP Y+ L + + V N +L ++ +W Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKVANP--APDLSEKTIW------- 701 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 + TAF ID W I+ A+ RQ+ +DQAQS NLY+ + Sbjct: 702 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 741 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + ++ AW G+K+TYY+RSR+ T Sbjct: 742 SEFLELHLHAWKAGIKSTYYVRSRALT 768 >gi|328719872|ref|XP_003246886.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Acyrthosiphon pisum] Length = 766 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 197/779 (25%), Positives = 348/779 (44%), Gaps = 48/779 (6%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESD 197 A + L + DGT+ + + +++ C GL+ + K ++ G++ S Sbjct: 2 AELKKHLYVQKRDGTIEKVHYDEIIARIKQLCYGLEKIDPAATAIHVIKKCLFAGITTSQ 61 Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ A + T+ P+Y K+ AR + L ++ ++ +Y+ Sbjct: 62 LDDAAAEMAITMATIHPDYEKLAARIAISNLHKQTKEKFSDVIDDIHKND------DYWN 115 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 + + + ++ + L + YE D+ +Y G + L + + IE P Sbjct: 116 TGLSDDIYEIIM------KNKDRLNEAINYENDYILDYFGFKYLTQNFLVKSENQTIERP 169 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN----SGTRHPQLSSCFL 373 Q FM+VA+ + + A+E Y +LS +P + + + + S + Sbjct: 170 QHLFMKVAVSIHGDD---IDSAIETYKMLSQK-LCMFSPVVMQLQPAARKLNVSVISHYS 225 Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + D + GI+ L + + +R G +I G+NGKS G+ LK + Sbjct: 226 VAMIADSIDGIYDTLNRLSTFILPYSSVAVHVHKIRAAGTYIKGSNGKSSGLPLMLKQYD 285 Query: 433 DTAVAVNQGGKRK--GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + K V Y E WH D+ + +D + T + + A WIPD FM Sbjct: 286 SMVHCKETLERPKSIKGVAIYCELWHADIMKIIDQIRKTTIADIKLKNSQLALWIPDEFM 345 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +RV + W+ SPD L D++G+EF+ Y+ YE + + V R+I A LW +++ Sbjct: 346 RRVENDQMWSFMSPDHCPGLIDVHGEEFDNLYKEYE---LKSKSFVMRQIEAKKLWSQII 402 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P + FKD CN +S + H+G + + + ++S+E A C SI++ Sbjct: 403 QSQIETGLPLLLFKDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMF 462 Query: 611 -FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN----HTHRAIGLGLMGFQS 665 + N FD+ KL T + L+ +I+ N + K + AIG+G+ G Sbjct: 463 LTSENIFDFSKLKETAKKITYDLNKIIENNNVILNKEDQLKLGLKQNQLAIGIGIQGLAD 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 + P+ + EA + + E I + A+ AS ELA + G Y ++ S +G+ D Sbjct: 523 LFIKMRYPFDNKEARYLNIQIHETIYYGALEASCELASKNGPYKTYPNSPTSKGLLQFDL 582 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + ++ W+ LK ++ G+RNS + T + I G SI+P Sbjct: 583 WN----------VKPSNLWDWNSLKTKIAQHGLRNSLVTVTSNTEVESTIFGNVNSIEPL 632 Query: 786 YQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 N+ + G+ VVN +L+ +L R LWDE +I +L + GSI I +PDD Sbjct: 633 DTNVKRRYISLGESKPKEIQVVNPYLLKDLHDRKLWDEKLIPELVNNMGSIQEI-NLPDD 691 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT 899 LK+++ T +EID L+ A+ R +IDQ+Q+ +L + + + + ++ W MGLKT Sbjct: 692 LKQLYRTKWEIDQKVLVTMAADRAPFIDQSQAFSLNMVKANEDIISEMHISTWKMGLKT 750 >gi|207091868|ref|ZP_03239655.1| ribonucleotide-diphosphate reductase subunit alpha [Helicobacter pylori HPKX_438_AG0C1] Length = 733 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 297/782 (37%), Positives = 414/782 (52%), Gaps = 107/782 (13%) Query: 199 ETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + LI ++ I+ + PN++ V +R L L +V + Sbjct: 1 QQTLIKTAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTG---------------YRHLK 45 Query: 258 RYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE 315 Y E + + + + FDL +L +K ERDF F YLG++ LYDRY L N + IE Sbjct: 46 EYFENAEEKGRILKGFKEKFDLEFLNGQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIE 105 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +PQ FM +AM LA E E K A+EFY +LS F MC+TPTL N+ T QLSSC++ + Sbjct: 106 LPQHMFMSIAMFLAQNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGS 165 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 PD++ GIF + +E A+L+KY GG+G D++ VR +G++I G S G IPFLK+AND A Sbjct: 166 TPDNIEGIFDSYKEMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVA 225 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +AV+Q G RKGA+ YLE WHIDV EF+DLRKN+GD+RRR HD+ A W+ DLF+KRV + Sbjct: 226 IAVDQLGTRKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLE 285 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +A WTLF P E DL +LYG++FE Y YE+ + I+A LW+K+L FE Sbjct: 286 DAMWTLFDPYECKDLTELYGQDFEKRYLEYEKD----PKIIKEYINAKDLWKKILMNYFE 341 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---SSEETAVCNLGSI------- 605 G P++ FKD N +P H G++ SSNLCTEI N+ GSI Sbjct: 342 AGLPFLAFKDNANRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGSIEFFEEKQ 401 Query: 606 -----------------------------------------NLLAHFANNQFDYDKLAST 624 NL + + + + Sbjct: 402 LVTTDSNITKCANKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRV 461 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + VR+LDNVID+N + K K +N +RAIGLG+MG L I + S E +E D Sbjct: 462 VPIMVRLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKID 521 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 ME IS+HAI SV LA+E+G Y F+ S W +G+FPID A E + + Sbjct: 522 ALMEQISYHAIDTSVNLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHA-C 580 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+SG VV Sbjct: 581 DWQGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP 640 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L + + + +A++ID LI++A+ RQ Sbjct: 641 NL----------NAETWN---------------------FYTSAYDIDAKDLIKAAAVRQ 669 Query: 865 KWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 KWIDQ QS+N++L + SGK L IY AW +GLK+TYYLRS S + EKS L Sbjct: 670 KWIDQGQSINVFLRIENASGKTLHDIYTLAWKLGLKSTYYLRSESPSIDEKSVLDRSVEC 729 Query: 923 LN 924 N Sbjct: 730 FN 731 >gi|319790521|ref|YP_004152154.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio ammonificans HB-1] gi|317115023|gb|ADU97513.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermovibrio ammonificans HB-1] Length = 764 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 220/794 (27%), Positives = 383/794 (48%), Gaps = 83/794 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ G + +++ ++ A GL V++ + ++ + +DG++ + A+I Sbjct: 3 RITVVKRKGDREPLSIEKIRKVINWAAQGLA-VNTLKLEAKLKLHFFDGITTRQIHEAVI 61 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +L +EP++ + R + L +EV ++ + K + Y + +++ Sbjct: 62 NTALSLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYVGGGEEYLKVVKDLVDK 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G+ + L E + +LV + +K DF ++Y G +L RY + E+PQ FM Sbjct: 120 GLYTKELLEKYSEEELVEAGDYIKQSYDFLYDYAGANLLARRYLCIYEDTPFELPQEMFM 179 Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ LA+ E ++ +FY+L++ +TP L N + LSSCF+T + D+L Sbjct: 180 TIALMLAINEPKEKRMAFVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDNL 239 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + A ++K +GG+G + + +R G+ I G S GV+P++K+ ND AVAVNQ Sbjct: 240 DSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWVKILNDVAVAVNQ 299 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GKR GAV L+ WH+DV +FL+L+ GD RR+ D+ IPDLFM+RV N W Sbjct: 300 EGKRAGAVTVALDVWHLDVYDFLELKTENGDLRRKAFDIFPQLVIPDLFMERVKLNQEWL 359 Query: 501 LFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 L P EV L++L+G EFE AY + E + ++++ +++ A L++++L Sbjct: 360 LVDPYEVERKFGYRLYELWGDEFEKAYTHVEAE--SDKLRLKKRVKARELFKEILKTQVA 417 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------------- 596 TG P+I FKD N +P +H G + + NLC E N + Sbjct: 418 TGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKGFKTYTDGKRIINEVEECG 477 Query: 597 -TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNL S+NL + ++L +R AVR+LDN I++ I +++ N +R Sbjct: 478 LVHTCNLLSVNLANI-----ENDEELEEAVRAAVRILDNTIELTSSPIPESELHNRRYRT 532 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G +G L IPY +++ + DE E I+++ I SV LA+ERGA+ F+GS Sbjct: 533 IGIGTLGLADYLAKREIPYGR-QSLAVIDELYEKIAYYGIDESVNLAKERGAFPLFEGSD 591 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+ ++ + L + + W +L ++KT G+RN AIAP + + Sbjct: 592 WSKGI-------IIGKDAGYLLEKTSLKEKWLKLLSKLKTYGIRNGQLFAIAPNTSSGLL 644 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + + P + Y+ N + +L + W Sbjct: 645 QGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KEKFW------------------- 680 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYRQ 891 + + +D +I+ S QKW+D S+ NL L + + + Sbjct: 681 --------FYRESKTMDQKEVIDVISTIQKWVDSGISMELLFNLNL-GIRARDIYETFLY 731 Query: 892 AWLMGLKTTYYLRS 905 AW G+KT YY+R+ Sbjct: 732 AWEKGIKTVYYVRT 745 >gi|253574543|ref|ZP_04851884.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846248|gb|EES74255.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] Length = 777 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 248/811 (30%), Positives = 379/811 (46%), Gaps = 95/811 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205 + + ++F+S RL + + GL +V + +L + D ++ ++ A S Sbjct: 5 VTKPNNRQLAFDSARLGVYADRILQGLHNVDKERLLRGVNAKLRRDVVTGEEISNAFTMS 64 Query: 206 SRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L+ K EP++ AR LL L ++ + KA E + + G+ Sbjct: 65 ALELVSKDEPDWKYAAARSLLTSLYKKAA---VNRRYKAYPEEPYGSFYHLITELCQLGI 121 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMR 323 L E + L + D F+Y+GL L +RY +G +E+PQ +M Sbjct: 122 YREELLECYTKEQIEELGRTIDPSCDLLFDYIGLLTLTERYLATDFDGRTMELPQERYMV 181 Query: 324 VAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 +AM L E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 182 IAMYLMHKEPEEKRLELVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMEAVEARGEWH 361 Query: 501 LFSPDEVSD------------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 LF P EV +L F Y I + A Sbjct: 362 LFCPHEVKKTMGWKDENGRPLGLEDFYDEELGKGSFREKYAEAVAHPTLSRI----TMPA 417 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595 + + ++++ ETG P++ ++D N +P + G+++SSNLCTEI N S Sbjct: 418 IDIMKRIMKSQLETGTPYMFYRDTVNRANPNRAHGMIYSSNLCTEIMQNQSPTVVEQEEL 477 Query: 596 ----------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 + VCNL SI+L L + R+LDNVIDIN Sbjct: 478 VTKDGQTRIVVSKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQTRMLDNVIDIN 532 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +A+ +N +RAIGLG G L L I + S EAVE D E I++ I +S+ Sbjct: 533 NIEVLQAQYTNSQYRAIGLGTFGLHHLLALEGIRWESQEAVEYNDALYEKINYLLIKSSM 592 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+G Y F GS W+ G + +S G + R+ + + W EL+K V+ G+R Sbjct: 593 ELAKEKGKYPKFAGSDWETGQY-FESRGYVDGTREGKYV---TTEQWRELQKEVRENGVR 648 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N+ AIAP + + I G + SIDP Y+ L + + + N +L ++ +W Sbjct: 649 NAWMFAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKIANP--APDLSEKTIW--- 701 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 + TAF ID W IE A RQ+ +DQ QS NLY+ Sbjct: 702 ------------------------YYKTAFLIDQHWSIEMAGARQRHVDQGQSFNLYVRP 737 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + ++ AW GLK+TYY+RSR+ T Sbjct: 738 DIRATDFLDLHLHAWKAGLKSTYYVRSRALT 768 >gi|323692022|ref|ZP_08106270.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] gi|323503945|gb|EGB19759.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] Length = 764 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 239/803 (29%), Positives = 376/803 (46%), Gaps = 104/803 (12%) Query: 149 MDDGTLISF-NSKRLEMIVEEACSGLQDV---------SSKIVLSETYKNMYDGLSESDL 198 G+ +S + + L + E L+++ S +++ + + + + Sbjct: 11 KTAGSQVSLQSLEHLTREIPELAPALEEIEARWPKEEYSPELLAHKFSAFVKKNMEPEEA 70 Query: 199 ETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + LI ++ L KE P++ + A LL + R + K + + ++ L Sbjct: 71 LSLLIQAAAELTRKEAPDWEYIAAYLLLVRFRINLREEDKKHGIGSFYDRIRYL------ 124 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM 316 E + + E +L + +RD F Y GL +L RY + +E Sbjct: 125 --TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLES 182 Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 PQ F+ +++ LA+KE ++ K FY++LS+ +TPTL N+ + QLSSCF+ T Sbjct: 183 PQEMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDT 242 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTA Sbjct: 243 VPDSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTA 302 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + Sbjct: 303 VAVDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADE 362 Query: 496 --NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 ++ W L P E+ L D YG+E+E Y + + E R + + R Sbjct: 363 AIDSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKD----ERIPKRVLPIKDIIRL 418 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596 +L ETG P+ +D N +P +H G+++ SNLCTEI N S E Sbjct: 419 ILKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGE 478 Query: 597 -----------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 VCNL S++L + D +L +R AVR LDNVID+N + Sbjct: 479 TVVVTVTKPGDFVVCNLASLSLGKINVS---DRSELTFLVRCAVRALDNVIDLNFFPVPY 535 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 AK +N +R +GLG+ G+ L I + S E + IAD E+I++ AI AS + A+E+ Sbjct: 536 AKINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEK 595 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y F GS W G M W L+++ +G+RN +A Sbjct: 596 GCYEYFPGSGWQTGS--------------YFEMRGYCSDEWRRLREKAAAVGLRNGWLIA 641 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APT++ + I G + +DP Y++ +G V Sbjct: 642 AAPTSSTSMISGTTAGLDPIMNRFYLEEKKNGLVPRVAP--------------------- 680 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 + + A ID W + +A RQ+ IDQAQS+NLY+ + + ++ Sbjct: 681 ----------ELTPSTYWRYKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQ 730 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907 + +Y AW G+KT YY+RS+S Sbjct: 731 VLELYLLAWKSGVKTIYYIRSKS 753 >gi|315644972|ref|ZP_07898100.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus vortex V453] gi|315279683|gb|EFU42985.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus vortex V453] Length = 777 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 242/807 (29%), Positives = 380/807 (47%), Gaps = 87/807 (10%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205 ++ + ++F+ RL + + GL + + +L + + ++ ++ +A S Sbjct: 5 VVKPNNRQLAFDEIRLSVYADRNLKGLDMLDKERLLRGVNAKLRGEQVTGEEISSAFTMS 64 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L+ KE PN+ AR L L ++ T + KA E + +++G+ Sbjct: 65 ALELVTKEEPNWKFAAARSFLTSLYKKAATN---RRYKAYPEEPYGAFYPLITELVQKGI 121 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMR 323 L S + L + RD F+Y+GL L +RY +G +E+PQ +M Sbjct: 122 YREDLLTSYTKEQIEELGECIDPSRDLLFDYIGLLTLAERYLATDFDGRVMELPQERYMV 181 Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 +AM L E ++ E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 182 IAMFLMHNEPADKRIDLVKEAYWAMSNLYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 242 EGIFDSNTDIARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+ V W+ Sbjct: 302 LGTRKGAIAVYLDVFHKDILSFLDLKLNNGDERMRAHDVFHGICLPDLFMEAVEAREEWS 361 Query: 501 LFSPDEVSDLHDL-----YGKEFEIAY---------ENYERQADRGEIKVFRKISAVALW 546 LF P EV + E Y +A + A+ + Sbjct: 362 LFCPHEVKKIMGWKDENGRPLGLEDFYDQAQGDGEFRQKYAEAVANPQLPRITVQAIDIM 421 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595 ++++ ETG P++ ++D N +P G+++SSNLCTEI N S Sbjct: 422 KRVMKSQLETGTPYMFYRDTVNRANPNSAHGMIYSSNLCTEIMQNQSPTVVEQEELVTKD 481 Query: 596 ------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + VCNL SI+L L + VR+LDNVIDIN + Sbjct: 482 GQTRIVISKIPGDFVVCNLNSIHLARAVPAGV-----LERLVPIQVRMLDNVIDINNIEV 536 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 +A+ +N +RA+GLG G L L I + S EAV D E I++ + +S+ELA+ Sbjct: 537 LQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVAYNDNLYEHINYLLVKSSMELAK 596 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G Y FKGS W+ G + E + + W EL++ V+ G+RN+ Sbjct: 597 EKGHYPKFKGSDWESGEYFTFRGYTDGEHEGKF----VTTEQWRELQQEVQANGVRNAWL 652 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAP + + I G + SIDP Y+ L + + V N +L ++ +W Sbjct: 653 FAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKVANP--APDLSEKTIW------- 701 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 + TAF ID W I+ A+ RQ+ +DQAQS NLY+ + Sbjct: 702 --------------------YYKTAFLIDQHWSIKMAAARQRHVDQAQSFNLYVRPDIRA 741 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + ++ AW G+K+TYY+RSR+ T Sbjct: 742 SEFLELHLHAWKAGIKSTYYVRSRALT 768 >gi|323486977|ref|ZP_08092291.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14163] gi|323399689|gb|EGA92073.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14163] Length = 764 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 239/803 (29%), Positives = 376/803 (46%), Gaps = 104/803 (12%) Query: 149 MDDGTLISF-NSKRLEMIVEEACSGLQDV---------SSKIVLSETYKNMYDGLSESDL 198 G+ +S + + L + E L+++ S +++ + + + + Sbjct: 11 KTAGSQVSLQSLEHLTREIPELAPALEEIEARWPKEEYSPELLAHKFSAFVKKNMEPEEA 70 Query: 199 ETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + LI ++ L KE P++ + A LL + R + K + + ++ L Sbjct: 71 LSLLIQAAAELTRKEAPDWEYIAAYLLLVRFRINLREEDKKHGIGSFYDRIRYL------ 124 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM 316 E + + E +L + +RD F Y GL +L RY + +E Sbjct: 125 --TRENLYGSYIMEYYSREELEEAGGLIDEKRDLLFNYAGLDLLLSRYVIRSRQNIPLES 182 Query: 317 PQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 PQ F+ +++ LA+KE ++ K FY++LS+ +TPTL N+ + QLSSCF+ T Sbjct: 183 PQEMFLGISLHLAMKEQKDRMKWVKRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDT 242 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 VPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTA Sbjct: 243 VPDSLDGIYRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFKGAAGGVIRWIKLANDTA 302 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 VAV+Q G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + Sbjct: 303 VAVDQLGVRQGAVAVYLDVWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPDLFWRLADE 362 Query: 496 --NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 ++ W L P E+ L D YG+E+E Y + + E R + + R Sbjct: 363 AIDSDWYLMCPHEILAATGYALEDYYGQEWEKRYWDCVKD----ERIPKRVLPIKDIIRL 418 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------------ 596 +L ETG P+ +D N +P +H G+++ SNLCTEI N S E Sbjct: 419 ILKSAVETGTPFTFNRDTVNRANPNRHRGMIYCSNLCTEIAQNMSPVEAVEQRIETVDGE 478 Query: 597 -----------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 VCNL S++L + D +L +R AVR LDNVID+N + Sbjct: 479 TVVVTVTKPGDFVVCNLASLSLGKINVS---DRSELTFLVRCAVRALDNVIDLNFFPVPY 535 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 AK +N +R +GLG+ G+ L I + S E + IAD E+I++ AI AS + A+E+ Sbjct: 536 AKINNLRYRPVGLGVSGYHHMLAKNGISWESEEHLAIADRVFEWINYAAIEASCDYAEEK 595 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y F GS W G M W L+++ +G+RN +A Sbjct: 596 GCYEYFPGSGWQTGS--------------YFEMRGYCSDEWRRLREKAAAVGLRNGWLIA 641 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APT++ + I G + +DP Y++ +G V Sbjct: 642 AAPTSSTSMISGTTAGLDPIMNRFYLEEKKTGLVPRVAP--------------------- 680 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 + + A ID W + +A RQ+ IDQAQS+NLY+ + + ++ Sbjct: 681 ----------ELTPSTYWRYKNAHYIDQKWSLRAAGIRQRHIDQAQSINLYITNNYTLRQ 730 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907 + +Y AW G+KT YY+RS+S Sbjct: 731 VLELYLLAWKSGVKTIYYIRSKS 753 >gi|138894465|ref|YP_001124918.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacillus thermodenitrificans NG80-2] gi|134265978|gb|ABO66173.1| Ribonucleoside-diphosphate reductase alpha subunit [Geobacillus thermodenitrificans NG80-2] Length = 785 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 253/802 (31%), Positives = 379/802 (47%), Gaps = 92/802 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204 ++ D G S + + ++E+A +G +S + ++ + + ++ L I Sbjct: 34 VVDDQGKEKSLSRREFAALIEQATAGFVRLSLEEYEERVWQLLSRKEFVTVDQLYQTAIL 93 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I E+EP + V AR L + RE + E + E+G Sbjct: 94 EGLSYISEEEPEWTFVCARLYLRMMYREAARQRGYDAR-----ERYGDFYSLIVSLTEQG 148 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 V + LL E ++ + L ++D F Y+GL+ L DRY E+PQ F+ Sbjct: 149 VYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLYELPQERFL 208 Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +AM L + E + + E Y LS+ + +TPTL N+G + QLSSCF+ TV D L Sbjct: 209 IIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVDDSL 268 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+V+Q Sbjct: 269 QAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLNNTAVSVDQ 328 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++V Q W Sbjct: 329 LGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRGDWY 388 Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 LF P EV + F Y + + K + A+ + + ++ Sbjct: 389 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVNDSRLSKEK----VPAIEVMKSIM 444 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595 E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 445 RSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQYVKDGTIIIE 504 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + VCNL SINL + I +R+LDNVID+N + +A +N Sbjct: 505 KIPGDFVVCNLSSINLARAVTDGV-----FERLIPIQLRMLDNVIDLNNIPVLQASLTNK 559 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +RA+GLG G+ L L I + S EAV DE E I++ AI AS+ELA+E+G+Y F Sbjct: 560 KYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLAIQASMELAKEKGSYPGF 619 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS W G + E R WD LK+ V GMRN MA+AP A+ Sbjct: 620 SGSDWQTGAYF--------ERRGYKNHGE---RDWDRLKREVARYGMRNGYLMAVAPNAS 668 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + SIDP ++ +Y + V +L ++ W Sbjct: 669 TSIIAGSTASIDPIFRKVYAEEKKDYKIPVTVP----DLNEQTTW--------------- 709 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890 + +A+ ID W I + RQ+ IDQA S N Y ++ K+L ++ Sbjct: 710 ------------YYKSAYYIDQRWSIRQNAARQRHIDQAISFNFYVMNTIKAKELLELHL 757 Query: 891 QAWLMGLKTTYYLRSRSATSVE 912 AW GLKTTYY+RS S T E Sbjct: 758 TAWKSGLKTTYYVRSTSGTMEE 779 >gi|196247936|ref|ZP_03146638.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. G11MC16] gi|196212720|gb|EDY07477.1| ribonucleoside-diphosphate reductase, alpha subunit [Geobacillus sp. G11MC16] Length = 760 Score = 465 bits (1196), Expect = e-128, Method: Composition-based stats. Identities = 253/802 (31%), Positives = 378/802 (47%), Gaps = 92/802 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIF 204 ++ D G S + + ++E+A +G +S + ++ + + ++ L I Sbjct: 9 VVDDQGKEKSLSRREFAALIEQATAGFVRLSLEEYEERVWQLLSRKEFVTVDQLYQTAIL 68 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I E+EP + V AR L + RE + E + E+G Sbjct: 69 EGLSYISEEEPEWTFVCARLYLRMMYREAARQRGYDAR-----ERYGDFYSLIVSLTEQG 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFM 322 V + LL E ++ + L ++D F Y+GL+ L DRY E+PQ F+ Sbjct: 124 VYSPLLLERYTKEEIETAGSFLDPDKDLLFTYIGLRTLADRYLARDYERRLYELPQERFL 183 Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +AM L + E + + E Y LS+ + +TPTL N+G + QLSSCF+ TV D L Sbjct: 184 IIAMTLMVNEPPKRRLELVKEAYWALSNLYMTVATPTLANAGKSYGQLSSCFVDTVDDSL 243 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I+ + + A L+K GG+G +R G+ I G G S GVIP++K N+TAV+V+Q Sbjct: 244 QAIYDSNTDIANLSKSGGGIGVYLGKIRSRGSDIRGFKGVSSGVIPWMKQLNNTAVSVDQ 303 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+RKGA+ YL+ WH D+ FLD R N GD+R RTHD+ T IPDLFM++V Q W Sbjct: 304 LGQRKGAISVYLDVWHKDIFAFLDARLNNGDERLRTHDLFTGVCIPDLFMEQVEQRGDWY 363 Query: 501 LFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 LF P EV + F Y + + K + A+ + + ++ Sbjct: 364 LFDPHEVRKVMGFSLEDFYDEEKGRGSFREKYWQCVNEPRLSKEK----VPAIEVMKSIM 419 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------------- 595 E+G P++ ++D N ++P +H+G+++ SNLCTEI N S Sbjct: 420 RSQLESGTPFMFYRDEVNRQNPNRHLGMIYCSNLCTEIAQNQSPTVTKQQYVKDGTIIIE 479 Query: 596 ----ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + VCNL SINL + L I +R+LDNVID+N + +A +N Sbjct: 480 KIPGDFVVCNLSSINLARAVTDGV-----LERLIPIQLRMLDNVIDLNNIPVLQASLTNK 534 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +RA+GLG G+ L L I + S EAV DE E I++ I AS+ELA+E+G+Y F Sbjct: 535 KYRAVGLGTFGWHHLLALKGIRWESEEAVRYTDELYETIAYLVIQASMELAKEKGSYPGF 594 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 GS W G + E R WD LK+ V GMRN MA+AP A+ Sbjct: 595 SGSDWQTGAYF--------ERRGYKNHGE---RDWDRLKREVARYGMRNGYLMAVAPNAS 643 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G + SIDP ++ +Y + V +L ++ W Sbjct: 644 TSIIAGSTASIDPIFRKVYAEEKKDYKIPVTVP----DLNEQTTW--------------- 684 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-LDEPSGKKLDFIYR 890 + +A+ ID W I + RQ IDQA S N Y ++ K+L ++ Sbjct: 685 ------------YYKSAYYIDQRWSIRQNAARQHHIDQAISFNFYVMNTIKAKELLELHL 732 Query: 891 QAWLMGLKTTYYLRSRSATSVE 912 AW GLKTTYY+RS S T E Sbjct: 733 TAWKSGLKTTYYVRSTSGTMEE 754 >gi|307596370|ref|YP_003902687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Vulcanisaeta distributa DSM 14429] gi|307551571|gb|ADN51636.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Vulcanisaeta distributa DSM 14429] Length = 895 Score = 465 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 223/857 (26%), Positives = 386/857 (45%), Gaps = 77/857 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDV-SSKIVLSETYKNMYDGLSESDLETALI 203 +K++ +G F+ +L ++ L V +V+S ++ +S S+L + Sbjct: 14 IKVLKRNGNTEDFSRDKLVRSLK-----LAGVPDPDLVISAL--DLRGTVSSSELSDKVQ 66 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ + + +LL + ++V K + + Y E F + G Sbjct: 67 LIMLNMVTDDLKWHDAARNYLLWSVYKQVWGKDVVKAINEGRVKFEDAYREGFKAWFRTG 126 Query: 264 VKARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQA 319 ++ R+ + LA L RD Y G++ L RY L +GS E+PQ Sbjct: 127 LELRIWDSEMSAWYAQHIDELAKYLDPSRDLLLTYNGVRTLMSRYLLKRLDGSFFEVPQY 186 Query: 320 FFMRVAMGLALKE----TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 +MR AMG+A E + FY+L+S FM ++PTL+N+ TR QLS+CF+ Sbjct: 187 LWMRTAMGVAYAELRYGGDPITWTRRFYDLMSQLRFMPNSPTLYNAMTRLGQLSACFVVP 246 Query: 376 VPDDL--------------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 + D L +GI AL+ A++ + GG+G ++ +R G + T G + Sbjct: 247 IDDCLSRESDTNREDPECNFGIMDALRLAALIFQSGGGVGYNFGKLRPEGDIVRSTTGIA 306 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + F+K+ + + QGGKR+GA L WH D+E+F+ + D + + N Sbjct: 307 SGPLSFMKLFDTLVDTIKQGGKRRGAQMGMLFWWHPDIEKFITSKSGELKDI-QLQNFNI 365 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + I D FM++ + L +P E L+ +G+EF YE G+++++R+++ Sbjct: 366 SVTIDDYFMQKALKGEDIYLINPRECPCLYKTWGEEFVKCYEGCVEAIKAGKVRIWRRVN 425 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNI-RSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 A LW K++ +++G P + +D N + + V++++N C+E +L + C Sbjct: 426 AKELWDKIVKSAWDSGDPGLWNRDLANYINNEKLPGEVINATNPCSEESLY----DFESC 481 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NLGSINL+ + + D+D LA ++ AVR LD+VID+N E+ +K R IGLG Sbjct: 482 NLGSINLVKYVHEGRIDWDSLARDVQLAVRFLDDVIDVNKLPHERLRKRVLETRRIGLGA 541 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G L L + Y SP+A+ +++E FI+ A+ AS+ELA+E+G Y ++K S W +GV Sbjct: 542 NGLADTLIALGLRYDSPQALAVSNELASFIARMAVRASIELAKEKGVYPAYKHSDWAEGV 601 Query: 721 FPI--------------------------DSIGLLAEVR----DELAMNRTSRLPWDELK 750 P D +VR A+ + R +L Sbjct: 602 LPWTKHRERLEKFSSTIDKEAVDEYMKTLDVGYNDPKVRAIIDGSTAVLKGYRALDSDLS 661 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 V T+G+RN + M+IAP + + I GV+ SI+P + Y+++ G N + L Sbjct: 662 IDVSTVGIRNGSIMSIAPEGSRSLIAGVNSSIEPLFAIAYIRNLSIGKLIEYNYTALRLL 721 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLK--KIHATAFEIDPMWLIESASRRQKWID 868 Q DE+ ++ + +P D + TA EI W + +W D Sbjct: 722 MQTKTLDESTRRFVEEYG-------ILPRDHPLADLLRTAHEIHWKWHVYMQVTWARWND 774 Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST-LKGVDGKLNAV 926 S + + + + ++ YR AWL+ R +S + T +KG + K Sbjct: 775 SGVSKTINMPSDTPMEDVEQAYRLAWLLNAFGITVYRDKSKSVQVIYTGVKGAEAKPTIE 834 Query: 927 PVTDPNSSTHSLGIPSS 943 + + S Sbjct: 835 VKEVKVETKPKVETKVS 851 >gi|149182582|ref|ZP_01861053.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. SG-1] gi|148849718|gb|EDL63897.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. SG-1] Length = 746 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 249/780 (31%), Positives = 369/780 (47%), Gaps = 95/780 (12%) Query: 164 MIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALIFSSRTLIE-KEPNYAKVT 220 +++E Q VS + + + ++ L+ LI ++ I +EP + V Sbjct: 14 RLLKELRERHQSVSFEEYEEKVLDTLEAKGDVTAEQLDNMLILAAVERISSQEPEWTYVA 73 Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 A L KL R + P+K + E + E G+ L + ++ Sbjct: 74 ADIYLRKLYRASAESRGTDPEKGY-----GSFYEMMAQLEEMGIYDTRLLQKYSRDEIDS 128 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL--KETEKEK 337 L + ERD F Y+G+ L +RY G IE+PQ FM +AM L E ++ Sbjct: 129 LERIINPERDGLFTYIGIVTLAERYLAKSHAGHFIELPQERFMIIAMTLLADEPEEKRLT 188 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 E Y LS+ + +TPTL N+G + QLSSCF+ TV DDL I+ + + + L+K Sbjct: 189 LIQEAYWALSNLYMTVATPTLANAGKSYGQLSSCFIDTVEDDLRSIYDSNTDVSTLSKNG 248 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G +R G+ I G G S G+IP++K N+TAV+V+Q G+R+GA+ YL+ WH Sbjct: 249 GGIGIYLGKIRSRGSDIKGFKGVSSGIIPWMKQLNNTAVSVDQLGQRQGAIAVYLDVWHK 308 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD + N GD+R+RTHD+ T +PDLFM++V + W LF P EV + G Sbjct: 309 DIFPFLDSKLNNGDERQRTHDLFTGVCLPDLFMEQVEKRGDWYLFDPHEVRKVM---GFS 365 Query: 518 FEIAY----------ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 E Y E Y E+ + + A+ L++ ++ ETG P++ ++D Sbjct: 366 LEDHYDEQPGQGSFREKYWACVFHPELS-HQTVPAIELFKSIMISQLETGTPYMFYRDTV 424 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGSINLL 608 N + QH G+++ SNLCTEIT N S + VCNL S++L Sbjct: 425 NRFNANQHKGMIYCSNLCTEITQNMSATVMEEERVEDGTIITYKKPGDYVVCNLSSLSLA 484 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + L I AVR+LDNVIDIN + +A+ +N +R IGLG G+ L Sbjct: 485 KAVQDGV-----LKEVISIAVRMLDNVIDINDIPVLQAQLTNERYRGIGLGTYGWHHLLA 539 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L I + S EA+E D E I+F I AS LA+E+GAY F GS W G Sbjct: 540 LKGIKWESEEALEYCDSLYEDIAFFTIKASAALAKEKGAYPYFTGSEWAAGS-------- 591 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + W ELK+ VK G+RN MA+AP+++ + I G + SIDP ++ Sbjct: 592 ------YFEKRDYTSPRWLELKEEVKEHGVRNGYLMAVAPSSSTSLIAGSTASIDPVFRL 645 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 Y + V + + TA Sbjct: 646 EYSEEKKDYKIPVTAP-------------------------------DLSPHTTWYYKTA 674 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + ID W I+ ++RQ+ IDQ+ S NLY+ ++ K L I+ AW GLKTTYY+RS S Sbjct: 675 YNIDQHWSIKQNAKRQRHIDQSISFNLYVRNDIKAKALLDIHLHAWKAGLKTTYYVRSTS 734 >gi|332971064|gb|EGK10034.1| ribonucleotide-diphosphate reductase alpha subunit [Desmospora sp. 8437] Length = 749 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 240/789 (30%), Positives = 362/789 (45%), Gaps = 94/789 (11%) Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIE- 211 I + + LE +++ S + +++ + + S + +I + + Sbjct: 10 ETIPRDRQALEGFLQQLMSDFPRLDLHEYVAQQLHSFREEDSVDRIADRMILDALERVSG 69 Query: 212 KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 +EP++ V +R L +L E + + E E GV + LL E Sbjct: 70 EEPDWTFVASRIYLLRLYEEA------SRHPFRQGKPYGDFYELIRGLTESGVYSPLLLE 123 Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330 + ++ LA ++ ERD F Y GL+ L DRY G E+PQ F+ +AM L Sbjct: 124 TYTRAEIGELAMMIRPERDHLFTYAGLRTLADRYLARSREGELYELPQERFLVIAMVLMS 183 Query: 331 KETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 +E + E Y LS+ + +TPTL N+G QLSSCF+ V D L GI+ + Sbjct: 184 REERERRLHWVREAYWALSNLYMTVATPTLSNAGKDFGQLSSCFVDVVDDSLQGIYDSNT 243 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A ++K GGLG +R G+ I G G S GVIP++K N+TAV+V+Q G+RKG++ Sbjct: 244 DVARVSKGGGGLGVYLGKIRSRGSDIKGYKGISSGVIPWMKQLNNTAVSVDQLGQRKGSI 303 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL+ WH D+ FLD + N GD+R RTHD+ T IPDLFM+ V W LF P ++ Sbjct: 304 AVYLDIWHQDILSFLDAKLNNGDERLRTHDLFTGVCIPDLFMEAVEAREDWHLFDPHQIR 363 Query: 509 D----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 F Y + + A+ L ++++ ETG Sbjct: 364 RVMGWSLEDFYDEKRGEGSFREKYAACVEHPELDRT----TVPAIELMKRIMVSQLETGT 419 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAV 599 P++ ++D N ++P H G+++ SNLCTEI N S + V Sbjct: 420 PYMFYRDEANRKNPNHHAGLIYCSNLCTEIMQNMSPTLLREERVEEGKILITKEPGDFVV 479 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL SINL + L I VR+LDNVID+N + +A+ +N +RAIGLG Sbjct: 480 CNLSSINLGRAVPDGV-----LKRLIPVQVRMLDNVIDLNTIEVPQARITNQKYRAIGLG 534 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G+ L + I + S EAV +E I++ I AS+ELA+E+G Y F GS W G Sbjct: 535 TFGWHHLLAVKGIRWESEEAVRFGEELYGEIAYLTIRASMELAREKGPYPLFAGSDWQTG 594 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 PW L + V+ G+RN+ MA+AP A+ + I G + Sbjct: 595 --------------AYFEKRGLREEPWHSLAEDVRHHGLRNAWLMAVAPNASTSLIAGST 640 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SIDP ++ Y + + V + Sbjct: 641 ASIDPVFRREYSEEKKNYKIPVTAP-------------------------------DLTP 669 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 + + A EID W + A+ RQ++IDQ+QSLNLY+ + + L ++ AW GLK Sbjct: 670 ETGWYYKPAHEIDQRWSLRQAAARQRYIDQSQSLNLYVRHDIKARDLLDLHLTAWKSGLK 729 Query: 899 TTYYLRSRS 907 TTYYLRS + Sbjct: 730 TTYYLRSTA 738 >gi|225386406|ref|ZP_03756170.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme DSM 15981] gi|225047487|gb|EEG57733.1| hypothetical protein CLOSTASPAR_00153 [Clostridium asparagiforme DSM 15981] Length = 761 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 238/789 (30%), Positives = 375/789 (47%), Gaps = 97/789 (12%) Query: 156 SFNSKRLEMIVEEACSGLQDVSSK-IVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE 213 F +E +E + +LS +++ G+ ++L +LI S+ L +E Sbjct: 22 PFEGGAVEACLEGIRQDFPGQEYELEILSNKFRSFRKPGMKRTELYDSLIQSAAELTSRE 81 Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 P + + AR + E+ + + ++ L EG+ + E Sbjct: 82 APRWEFIAARIRYSQFGEELEERLAGLGISGFYDKLVYL--------TREGLYGDYILEH 133 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVAMGLALK 331 + ++ L ER+ F Y GL +L RY + + +E PQ ++ +A+ LA++ Sbjct: 134 YTEAEIREAETFLDPERNKLFTYSGLDLLIKRYVIQNHKRQPLETPQEMYLGIALHLAME 193 Query: 332 ET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 E + FY++LS+ +TPTL N+ QLSSCF+ TVPD L GI+ ++ Sbjct: 194 EKPDCRMAWVRRFYDMLSNMQVTMATPTLSNARKPFHQLSSCFIDTVPDSLEGIYRSIDN 253 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A ++K+ GG+G + VR G I G G + GVI ++K+ NDTAVAV+Q G R+GAV Sbjct: 254 FAQVSKFGGGMGLYFGKVRATGGSIRGFEGAAGGVIRWVKLVNDTAVAVDQLGMRQGAVA 313 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLFSPDEV 507 YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K + N W L P E+ Sbjct: 314 VYLDAWHKDLPEFLQLRTNNGDDRMKAHDVFPAICYPDLFWKMAKEDLNQPWHLMCPHEI 373 Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 L D +G+E+E Y + + R ++ + R +L ETG P+ Sbjct: 374 LQVKGYSLEDSFGEEWERRYLDCVADGRISK----RTVALKDIVRLILRSQVETGTPFTF 429 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSEETAV 599 +D N +P H G+++ SNLCTEI N + + E V Sbjct: 430 NRDVVNRANPNGHKGMIYCSNLCTEIAQNMAGIETVSTEIREENGDTVVVTTTKAGEFVV 489 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL S+ L D + + +AVR LDNVI +N + + AK +N +R+IGLG Sbjct: 490 CNLASLCLGNIDVT---DEAAVRAVTASAVRALDNVIGLNFYPLPYAKITNRRYRSIGLG 546 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G+ L I + S E + ADE E I+F A+ AS +LA E+G+Y F+GS W+ G Sbjct: 547 VSGYHHMLAKNGIAWESEEHLRFADEVFERINFAAVEASSDLAAEKGSYDYFEGSDWETG 606 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + WD L+++V GMRN+ +A+APT++ + +CG + Sbjct: 607 --------------AYFDKRGYTGEKWDGLRRKVARQGMRNAYLVAVAPTSSTSILCGTT 652 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 +DP + +++ V EL R W Sbjct: 653 AGVDPVMKRYFLEEKKHAILPRVAP----ELTPRTYW----------------------- 685 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 ++ A +D W + +A RQ+ IDQAQS+NLY+ +E + +++ +Y QAW G+K Sbjct: 686 ----LYKEAHLVDQTWSVRAAGARQRHIDQAQSVNLYITNEYTMRQVLNLYIQAWEEGVK 741 Query: 899 TTYYLRSRS 907 T YY+RS++ Sbjct: 742 TIYYVRSKA 750 >gi|167748342|ref|ZP_02420469.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662] gi|167652334|gb|EDR96463.1| hypothetical protein ANACAC_03086 [Anaerostipes caccae DSM 14662] Length = 763 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 230/795 (28%), Positives = 384/795 (48%), Gaps = 97/795 (12%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSS 206 +++ F L ++ Q+ S +L+E +++ + +G+ + + L+ ++ Sbjct: 20 ILESFRTEEFPIGDLLKSIQN--EFPQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAA 77 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 L +E P + + AR + + V + + + + ++ L ++ + Sbjct: 78 AELTSQEAPKWENIAARLKILEFESVVKNNLEEYQIRNFYEKIVVLS--------QQNLY 129 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 + ++ + ++ ++ ++ ER+ F Y GL++L RY + G+ +E PQ FM + Sbjct: 130 GDYILKNYAEDEIHLFSSWIRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGI 189 Query: 325 AMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 AM LA+KE ++ + FY++LS +TPTL N+ + QLSSCF+ TVPD L GI Sbjct: 190 AMHLAMKETEDRNQWVKRFYDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 249 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G Sbjct: 250 YRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGM 309 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R+GAV YL+ WH D+ EFL LR N GD+R + HD+ A PD F ++ N W L Sbjct: 310 RQGAVAVYLDVWHRDLPEFLSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGSWYL 369 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG E+ Y + E R I + R ++ ET Sbjct: 370 MCPHEILTVKGYALEDCYGTEWTEKYLDCV----LDERISKRVIPIKDIVRMIIKSAAET 425 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593 G P+ +D N +P +H G+++ SNLCTEI N S Sbjct: 426 GTPFTFNRDHVNRANPNRHKGIIYCSNLCTEIAQNMSASGQIEQKIEMIGGEEVVVTVTK 485 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S++L DY++L+ +AVR LDNVID+N + A+ ++ + Sbjct: 486 PGDFVVCNLASLSLGNLCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRY 542 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +GLG+ G+ L I + S E ++ A++ I + A++AS ++++E+G+Y F G Sbjct: 543 RPVGLGVSGYHHMLAKHKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPG 602 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G D ++ W L+ R+K G+RN +A APT++ + Sbjct: 603 SDWQTG--------------DYFRKRDLTKGRWKALEDRIKKHGLRNGYLLAAAPTSSTS 648 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + +DP +++ G V EL W Sbjct: 649 IIAGTTAGLDPVMNRYFLEEKKYGLIPRVAP----ELSMETFW----------------- 687 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 + A ID W +++ RQ+ IDQAQS+NLY+ +E + +K+ +Y A Sbjct: 688 ----------YYKNAHYIDQTWSVKACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILA 737 Query: 893 WLMGLKTTYYLRSRS 907 W G+KT YY RS+S Sbjct: 738 WEQGVKTIYYTRSKS 752 >gi|61806079|ref|YP_214439.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|61374588|gb|AAX44585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|265525291|gb|ACY76088.1| NrdA [Prochlorococcus phage P-SSM2] Length = 775 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 203/825 (24%), Positives = 342/825 (41%), Gaps = 74/825 (8%) Query: 146 KIMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + +G + N +++ ++ EEAC GL VS+ V ++ YDG++ ++++ LI Sbjct: 6 TVKKRNGRGVEPLNLEKIHVMCEEACEGLAGVSASQVEIQSGIQFYDGITTAEIQEILIR 65 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI+ PNY V AR LL LR+++ + + P ++ + +++G Sbjct: 66 SASDLIDLDHPNYQFVAARLLLFSLRKQLFGRLRECPTVI----------DHVQKCVKKG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + + + + L + + + RDF F Y GL+ + D+Y G E PQ + Sbjct: 116 IYDAEILDLYSEEEYNRLQSFIDHSRDFLFTYAGLRQVVDKYLVQDRSTGEVYETPQFMY 175 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + +A + + + ++Y+ +S TP + T Q +SC L + D Sbjct: 176 LMIAATIFSKYPKETRLDYVRKYYDAISRHRINIPTPIMAGVRTPIRQFASCVLVDIDDT 235 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L IF + G+G + +RG+ A I G + GV+PFLK T Sbjct: 236 LDSIFSSDMAIGKYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVVPFLKKFESTVRCCT 295 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R G+ + WH ++ + L L+ N G + R ++ + + LF +R QN Sbjct: 296 QNGIRGGSATVHFPIWHQEISDILVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIQNLPI 355 Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 TLFSP +V L+D +G F+ Y YE E I A L +L ETG Sbjct: 356 TLFSPHDVPGLYDAFGSDTFDELYTQYE----SDESIPRTTIGAQELILDLLKERAETGR 411 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL---AHFANNQ 615 ++ D CN S V SNLC EITL + + G I L A Sbjct: 412 IYLMNIDHCNSHSSFLDK--VEMSNLCQEITLPTKPIQHIDDETGEIALCILSAINIGKI 469 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D L ++R LD +ID + + A+ + R++G+G +G L + Y Sbjct: 470 RDVSDLEGLCDLSIRSLDELIDFQGYPVRAAEIATKARRSLGVGFIGLAHYLAKQGVKYE 529 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 PEA ++ + E ++ I +SV LA+E+GA + + + QG+ PID+ + Sbjct: 530 DPEAWKLVHDLTEVFQYNLIKSSVNLAKEKGACTYSDRTKYSQGILPIDTYKQDVDE--- 586 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + W+ L++ VK G+RNS A P+ + + +C + I+P L +K + Sbjct: 587 -LVPNNLSCDWESLREDVKQYGIRNSTLSAQMPSESSSVVCNATNGIEPPRGYLSIKKSK 645 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G + N LK + ++ D+ + G Sbjct: 646 KGPLKQIVPSY-NTLK----NNYTLLWDMPNNTG-------------------------- 674 Query: 856 LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I + QK+ DQA S N + E + + G KT+YY + Sbjct: 675 YINIVAVMQKFFDQAISGNWSYNPQHFDEGEVPTSVMAQDLLTTYKYGWKTSYYQNTYDV 734 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + E + N V + ST + S + ECE C Sbjct: 735 KTDE---IDLSVSNPNDVGIQG---STRLENLISELENQEECESC 773 >gi|301792342|ref|XP_002931138.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like, partial [Ailuropoda melanoleuca] Length = 477 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 180/490 (36%), Positives = 280/490 (57%), Gaps = 18/490 (3%) Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 KNTG + +R D+ A WIPDLFMKRV N W+L P+E L +++G+EFE YE+YE Sbjct: 1 KNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYE 60 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +Q +V + + A LW ++ ETG P++ +KD CN +S QQ++G + SNLCT Sbjct: 61 KQ-----GRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCT 115 Query: 587 EITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 EI +S +E AVCNL S+ L + + + +D+ KLA + VR L+ +IDIN + + + Sbjct: 116 EIVEYTSKDEVAVCNLASVALNMYVTSEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPE 175 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A SN HR IG+G+ G A L+ P+ SPEA + + E I + A+ AS +LA+E Sbjct: 176 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREH 235 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y +++GS +G+ D + T W LK+++ G+RNS +A Sbjct: 236 GPYETYEGSPVSRGILQYDMWNVTP----------TDLWDWKLLKEKIAKYGIRNSLLIA 285 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PTA+ A I G ++SI+P N+Y + +SG+F +VN L+ +L +R LW+E M + + Sbjct: 286 PMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQII 345 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 +GSI +I IPDDLK+++ T +EI +++ A+ R +IDQ+QSLN+++ EP+ KL Sbjct: 346 ACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKL 405 Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSS 943 ++ W GLKT YYLR+R A + + TL + ++ + S Sbjct: 406 TSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEEKERNTAAMVCS 465 Query: 944 CTSDTECEVC 953 + EC +C Sbjct: 466 LENREECLMC 475 >gi|326781923|ref|YP_004322325.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] gi|310003113|gb|ADO97511.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] Length = 765 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 189/825 (22%), Positives = 336/825 (40%), Gaps = 84/825 (10%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K+ DG + + +++ ++VEEAC GL VS+ V ++ YDG++ ++++ LI + Sbjct: 6 KVKKRDGRIEPLDLEKMHLMVEEACQGLAGVSASQVEMKSGIQFYDGITTAEIQEILIKA 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + LI+ PNY V AR LL LR+ + + + P T + + + V Sbjct: 66 ASDLIDLDHPNYQFVAARLLLFSLRKSLYGKMRELPHLET----------HINDCVGKEV 115 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322 ++ ++ + + + + RDF F Y GL+ + D+Y G E PQ +M Sbjct: 116 YDSDIYTKYSKEEIEKVNSYIDHNRDFLFTYAGLRQVVDKYLVQDRSGGGVYETPQFMYM 175 Query: 323 RVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ + + + +Y+ +S TP + T Q +SC L V D L Sbjct: 176 MIALTIFREYPKETRLSYVKRYYDAISKHRINIPTPIMAGVRTPLRQFASCVLVDVDDTL 235 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 IF + G+G + +RG+ + I G + GV+PFLK T Q Sbjct: 236 DSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCCTQ 295 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R + + Sbjct: 296 NGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIADGEIS 355 Query: 501 LFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 LFSP +V L+D +G + F+ Y +YE + + A L +L ETG Sbjct: 356 LFSPHDVPGLYDAFGTDAFDARYVDYESDQSIPR----KTVRAQELILNLLKERAETGRI 411 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL---AHFANNQF 616 ++ D CN S + V SNLC EITL + + I L A Sbjct: 412 YLMNIDHCNSHSSFKDK--VEMSNLCQEITLPTYPLQHIDDEGAEIALCILSAINVGKVR 469 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 ++L +VR L+ +ID + ++ A+++ R++G+G +G L L Y S Sbjct: 470 SDEELEELCDLSVRGLEELIDYQEYPVKAAERATKARRSLGIGFIGLAHYLAKLGYKYDS 529 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA + E ++ + +S ++A+E+G + F + + G+ PID+ + DE+ Sbjct: 530 QEAWDAVHGLSESFQYYLLKSSNQIAKEKGWCADFGRTKYSDGILPIDTY---KKDVDEI 586 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + W+ L+ + G+R+S A P+ + + + + I+P L +K + Sbjct: 587 TTEGLAH-DWESLRASILEHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSIKKSKK 645 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI-DPMW 855 G + GS LK + +++ Sbjct: 646 GPLKQIVP----------------------QYGS----------LKNNYTLLWDMESNRG 673 Query: 856 LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I + QK+ DQA S N +E + + + G KT+YY Sbjct: 674 YINVVAVMQKFFDQAISGNWSYNPENYPDNEVPVSTMAQDFLTTYKYGWKTSYY------ 727 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T ++ N + ECE C Sbjct: 728 ----QNTHDMKSDEVEEEKSELHNILNELEQA-----EEGECESC 763 >gi|310831538|ref|YP_003970181.1| putative ribonucleotide reductase large subunit [Cafeteria roenbergensis virus BV-PW1] Length = 922 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 223/941 (23%), Positives = 383/941 (40%), Gaps = 170/941 (18%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ DG + + ++ + + +G +++ ++ +T ++Y G++ +L+ Sbjct: 17 YVIKRDGRRENVHFDKITQRISKLLTGNMNKNIDIINIVKKTITSIYPGITTKELDNQSA 76 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + +YA + R + L +E + T +K + + +Y + +I++ Sbjct: 77 YQCGMMTPLHYDYALLAGRIYVSSLHKETMKTFVEKMELIN--DNLHIYDSEWIEFIKKH 134 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 L + Y RD++F++ G++ + Y ++G IE PQ FMR Sbjct: 135 R--------------NKLNKIIDYNRDYSFDFFGIKTMERTYITKLDGHLIERPQDVFMR 180 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VA + + ++ ++ YNL+S +F ++PTLFN+G + L SCFL D + GI Sbjct: 181 VASLVHCGD---LQKTIDSYNLMSKKYFTHASPTLFNAGNKKGNLVSCFLLGTEDSMTGI 237 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + A ++K+ GG+G + VR G+ I TNG S G++P L+V N VNQ G+ Sbjct: 238 SKTWNDVAHISKWGGGIGIHISNVRAKGSEIKSTNGHSDGIVPMLQVYNSICRYVNQSGR 297 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 RKG+ YLE H D+ +FL+LRKNTG + R D+ A W+ DLFM +V N W LF Sbjct: 298 RKGSFAFYLEPHHADIFDFLELRKNTGAESERARDLFLALWVSDLFMNQVKLNNDWYLFC 357 Query: 504 P------DEVSDLHD---LYGKEFEIAYENYERQ-------------------------A 529 P ++V + E Y + Sbjct: 358 PDKAPGLNDVYGDEYETLYWKYVSEEKYNKKIKARKLWEAIMTAQFETGSPYMLYKDNIN 417 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFET----------GHPWITFKDPC--NIRSPQQHVG 577 + K I + L +++ T P N Sbjct: 418 KKSNQKNIGIIRSSNLCAEIVEYSDSTETAACNLASIALPNFIKSKNVSDNGWIVYSKPN 477 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLA---------------------------- 609 ++ + + + E + + S+ L Sbjct: 478 CIYCKWIKQMLINKNIKFEEKLIEIDSVELYNLKQKIGKELITFPQVFLNNTLIGGMEET 537 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + +DY+KL + + LD+VID N + +++++SN HR IGLG+ G L Sbjct: 538 WIYFGKDYDYEKLWNVAYHVTQNLDSVIDKNYYPTKESRRSNMRHRPIGLGIQGLADTLA 597 Query: 669 LLHIPYASPEAVEIADES------------------------------------------ 686 LL +PYAS A++I ++ Sbjct: 598 LLRVPYASKAALDINEKIFGIIYHAAVTASVDIAKEREEDMKLLLKYFEEHPKKKPSSEF 657 Query: 687 ----MEFISFHAIS---------ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 E ++ Q GAYS+F+GS + +G Sbjct: 658 YDDNFECYPKKIEKIYHKLRPHSTELDKTQFLGAYSTFEGSPFSEGKLQYHLWNRTPINI 717 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 L WD L +K G RNS A+ PTA+ + + G +S +P N+Y + Sbjct: 718 STL----IEGKSWDSLINEMKKYGTRNSLLTALMPTASTSQLLGNYESFEPFTSNIYTRR 773 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 ++G+F VVN L+N+L + W + + +GSI NI +P+ +K I+ T++E+ Sbjct: 774 TLAGEFIVVNKHLINDLNEIGEWTNEIRQKVINDNGSIQNI-LLPNIIKNIYQTSYEMKQ 832 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVE 912 ++I+ S R +IDQ QS+NLY +P +KL AW GLKT YYLRS+ + + Sbjct: 833 KYIIDGCSIRGAYIDQTQSMNLYFAQPDSQKLTSSQFYAWEQGLKTGLYYLRSKPSANAT 892 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K T+ N+S + + + D C +C Sbjct: 893 KITV-------------LLNNSQNKINSQNMMEEDEGCVMC 920 >gi|308067266|ref|YP_003868871.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide reductase) [Paenibacillus polymyxa E681] gi|305856545|gb|ADM68333.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide reductase) [Paenibacillus polymyxa E681] Length = 777 Score = 460 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 240/811 (29%), Positives = 380/811 (46%), Gaps = 95/811 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205 + + ++F+ R+ + + SGL + ++ + D ++ D+ A + Sbjct: 5 VTKPNNRQLAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDDISNAFAMA 64 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L+ KE P++ AR LL L ++ T + K+ E + ++ G+ Sbjct: 65 ALELVSKEEPDWKFAAARALLTSLYKKAAT---HRRYKSYADEPYGAFYPLITDLVQRGI 121 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + L + + L + + + D F+Y+GL L +RY + +G +E+PQ +M Sbjct: 122 YRQELLDYYTKEQIDELGDSILPKNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMI 181 Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 +AM L +E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 182 IAMYLMHQEPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 241 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 242 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 301 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+RV W Sbjct: 302 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWN 361 Query: 501 LFSPDEVSD------------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 LF P EV F YE + I + A Sbjct: 362 LFCPHEVKKVMGWKDDNGRPLGLEDFYDETFGSGTFREKYEEASQHPILSRI----TVPA 417 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593 + + ++++ ETG P++ ++D N +P + G+V+SSNLCTEI N S Sbjct: 418 IDIMKRLMKSQLETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEEL 477 Query: 594 --------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 + VCNL SI+L D + VR+LDNVIDIN Sbjct: 478 VTKDGQTRIVISKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDIN 532 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +A+ +N +RA+GLG G L L I + S EAV D E I++ A+ +S+ Sbjct: 533 NIEVLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSM 592 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+G Y+ F+GS W G + + + W EL + VK G+R Sbjct: 593 ELAKEKGRYAKFEGSDWSTGHYFTSRGYTDGTREGKF----VTTSEWSELSEEVKQNGVR 648 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N+ AIAP + + I G + SIDP Y+ L + + + N +L ++ +W Sbjct: 649 NAWLFAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKIANP--APDLNEKTIW--- 701 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 + TAF +D I AS RQ+ IDQ QS NLY+ Sbjct: 702 ------------------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYVRP 737 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + + ++ AW G+K+TYY+RSR+ T Sbjct: 738 DIKATEFLELHIHAWKSGMKSTYYVRSRALT 768 >gi|160937687|ref|ZP_02085047.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC BAA-613] gi|158439332|gb|EDP17084.1| hypothetical protein CLOBOL_02577 [Clostridium bolteae ATCC BAA-613] Length = 748 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 240/789 (30%), Positives = 366/789 (46%), Gaps = 97/789 (12%) Query: 156 SFNSKRLEMIVEEACSGLQDVSS--KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE 213 + K LE +EE Q +L G+ ++ ALI S+ L KE Sbjct: 9 DLDYKGLEQCLEEIGRDFQGEGYGLDRLLERYRSFRKPGMGPAEGMEALIRSAAELTSKE 68 Query: 214 -PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 P + AR EV + K + ++ L E+G+ + + Sbjct: 69 TPLWEFAAARLRYCGFACEVEEQLKGLGIKGLYEKISYL--------TEQGLYGDYILKH 120 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALK 331 ++ L ER+ F Y GL +L RY + + +E PQ ++ +++ LA+K Sbjct: 121 YSREEIEEAEGFLDDERNKLFTYAGLDLLLKRYVIQDHSHHPLETPQEMYLGISLHLAMK 180 Query: 332 E--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 E + + FY++LS +TPTL N+ + QLSSCF+ TVPD L GI+ ++ Sbjct: 181 ESKDCRMQWVRRFYDMLSRMQVTMATPTLSNARKPYHQLSSCFIDTVPDSLEGIYRSVDN 240 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A ++K+ GG+G + VR G+ I G G + GVI ++K+ NDTAVAV+Q G R+GA Sbjct: 241 FAQVSKFGGGMGLYFGKVRATGSRIRGFEGAAGGVIRWIKLVNDTAVAVDQLGMRQGAAA 300 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV 507 YL+ WH D+ EFL LR N GDDR + HD+ A PDLF K +N W L P E+ Sbjct: 301 VYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCFPDLFWKMAEENLDQDWHLMCPHEI 360 Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 L D YG+ +E Y + + R + + R ++ ETG P+I Sbjct: 361 RTVKGYCLEDCYGELWEERYLDCVGDDRISK----RTVLLKDVVRLIIKSAVETGTPFIF 416 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAV 599 +D N +P H G+++ SNLCTEI N S E V Sbjct: 417 NRDTVNRANPNSHRGIIYCSNLCTEIAQNMSPIESVSTQVLEVNGETAVVQTTRPGDFVV 476 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL S+ L A + D D++ +AVR LDNVID+N + + A +N +R IGLG Sbjct: 477 CNLASLCLGAIDVD---DPDEVEYIAASAVRALDNVIDLNFYPLAYAGITNQNYRGIGLG 533 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G+ L I + S E + AD+ E I + A+ AS LA E+G Y F+GS W G Sbjct: 534 VSGYHHMLAKHGIRWESEEHLVFADQVFERIHYAAVRASANLAAEKGCYRYFEGSEWQTG 593 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 W EL ++V GMRN+ +A+APT++ + + G + Sbjct: 594 --------------AYFEKRGLVSREWKELAEQVAEHGMRNAYLLAVAPTSSTSILSGTT 639 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 +DP + Y++ + V +L R W Sbjct: 640 AGLDPVMKRFYLEEKKNAILPRVAP----DLTPRTFW----------------------- 672 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 ++ + + +D W + +A RQ+ IDQAQS+NLY+ ++ + ++L +Y AW G+K Sbjct: 673 ----LYKSGYTMDQTWTVRAAGVRQRHIDQAQSVNLYITNDYTMRQLLNLYILAWESGVK 728 Query: 899 TTYYLRSRS 907 T YY+RS+S Sbjct: 729 TLYYVRSKS 737 >gi|325663146|ref|ZP_08151596.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 4_1_37FAA] gi|325470600|gb|EGC73830.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 4_1_37FAA] Length = 750 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 245/770 (31%), Positives = 372/770 (48%), Gaps = 95/770 (12%) Query: 173 LQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230 L V S L E Y Y G S + L+ ++ L +E P + + AR L R Sbjct: 30 LDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWEMIAARIRLVTFRN 89 Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E+ + ++ + + ++ L +E + + E+ + ++ ++ ERD Sbjct: 90 ELKEQMKQRNVNSFYEKICYL--------TKENLYGAYILENYTEEEITAFEKLMREERD 141 Query: 291 FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSS 348 F Y GL++L +RY + G +E PQ F+ +AM LA+KE + +FYN+LS Sbjct: 142 HLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDRSGWVEKFYNMLSK 201 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 +TPTL N+ H QLSSCF+ TVPD L GI+ ++ A ++K GG+G + VR Sbjct: 202 LQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSKLGGGMGMYFGKVR 261 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+ I G G + GVI ++++ NDTAVAV+Q G R+GA YL+ WH D+ EFL+LR N Sbjct: 262 ASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLNLRTN 321 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521 GDDR + HD+ PD F ++ N W L P E+ L D +G+E++ Sbjct: 322 NGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGYALEDSFGEEWKKK 381 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y + + + R I + R ++ + ETG P+ +D N +P H G+++ Sbjct: 382 YLDCVADPEIQK----RVIPIKDVIRMIIKSVVETGTPFAFNRDHVNRANPNSHKGIIYC 437 Query: 582 SNLCTEITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQFDY 618 SNLCTEI N S E VCNL S++L N + Sbjct: 438 SNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASLSLGRIDVN---NK 494 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L+ +TAVR LDNVID+N + AK +N +R IGLG+ G+ L IP+ S E Sbjct: 495 EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKNEIPWESEE 554 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 + A+ I + A+ AS ELA+E+G+Y+ F+GS W G + A Sbjct: 555 HLAFAERVFAEIHYAAVEASAELAKEKGSYTYFEGSKWQTG--------------EYFAE 600 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + W L K++ GMRN MAIAPT + + I G + IDP +++ SG Sbjct: 601 RHLTEDRWKNLAKKIMENGMRNGYLMAIAPTGSTSMIAGTTAGIDPVMSRYFLEEKKSGI 660 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 V L + W + A ID W + Sbjct: 661 LPRVAPELTMD----TFW---------------------------YYKNAHHIDQTWSVR 689 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + RQ++IDQAQS+NLY+ +E + +K+ +Y AW G+KT YY+RS+S Sbjct: 690 ACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIRSKS 739 >gi|331086749|ref|ZP_08335826.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409915|gb|EGG89350.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 9_1_43BFAA] Length = 750 Score = 459 bits (1181), Expect = e-126, Method: Composition-based stats. Identities = 246/770 (31%), Positives = 373/770 (48%), Gaps = 95/770 (12%) Query: 173 LQDVSSKIVLSETYKNMYD-GLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230 L V S L E Y Y G S + L+ ++ L +E P + + AR L R Sbjct: 30 LDPVYSLEKLEEKYHTFYKTGFSGEEQMKMLLKAAVELTTQEAPKWEMIAARIRLVTFRN 89 Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E+ + ++ + + ++ L +E + + E+ + ++ ++ ERD Sbjct: 90 ELKEQMKQRNVNSFYEKICYL--------TKENLYGAYILENYTEEEITAFEKLMREERD 141 Query: 291 FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSS 348 F Y GL++L +RY + G +E PQ F+ +AM LA+KE + +FYN+LS Sbjct: 142 HLFNYSGLELLLNRYVIRDQKGVLLESPQEMFLGIAMHLAMKEPCDRSVWVEKFYNMLSK 201 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 +TPTL N+ H QLSSCF+ TVPD L GI+ ++ A ++K GG+G + VR Sbjct: 202 LQVTVATPTLANARKPHHQLSSCFIDTVPDSLDGIYKSIDNFAKVSKLGGGMGMYFGKVR 261 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+ I G G + GVI ++++ NDTAVAV+Q G R+GA YL+ WH D+ EFL+LR N Sbjct: 262 ASGSPIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLNLRTN 321 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521 GDDR + HD+ PD F ++ N W L P E+ L D +G+E++ Sbjct: 322 NGDDRMKAHDIFPGVCYPDYFWEQARDNLEGEWYLMCPHEILKKKGYALEDSFGEEWKKK 381 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y + + + R I + R ++ + ETG P+ +D N +P H G+++ Sbjct: 382 YLDCVADPEIQK----RVIPIKDVIRMIIKSVVETGTPFAFNRDHVNRANPNSHKGIIYC 437 Query: 582 SNLCTEITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQFDY 618 SNLCTEI N S E VCNL S++L N + Sbjct: 438 SNLCTEIAQNMSEMEVTEEKITEIDGEQVVVTVTKPGEFVVCNLASLSLGRIDVN---NR 494 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L+ +TAVR LDNVID+N + AK +N +R IGLG+ G+ L IP+ S E Sbjct: 495 EELSEITKTAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGYHHMLAKNEIPWESEE 554 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 + A+ I + A+ AS ELA+E+G Y+ F+GS W G + A Sbjct: 555 HLAFAERVFAEIHYAAVEASAELAREKGCYTYFEGSKWQTG--------------EYFAE 600 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + W +L K+V+ GMRN MAIAPT + + I G + IDP +++ SG Sbjct: 601 RHLTEDRWKKLAKKVRENGMRNGYLMAIAPTGSTSMIAGTTAGIDPVMSRYFLEEKKSGI 660 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 V L + W + A ID W + Sbjct: 661 LPRVAPELTMD----TFW---------------------------YYKNAHHIDQTWSVR 689 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + RQ++IDQAQS+NLY+ +E + +K+ +Y AW G+KT YY+RS+S Sbjct: 690 ACGVRQRYIDQAQSMNLYITNEYTFRKVLHLYLLAWEEGVKTIYYIRSKS 739 >gi|67598375|ref|XP_666214.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide reductase R1 subunit) [Cryptosporidium hominis TU502] gi|54657163|gb|EAL35983.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide reductase R1 subunit) [Cryptosporidium hominis] Length = 526 Score = 459 bits (1181), Expect = e-126, Method: Composition-based stats. Identities = 181/524 (34%), Positives = 289/524 (55%), Gaps = 29/524 (5%) Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 K + YLE WH+DV EF+++RKN G + R D+ A W+PDLFM+RV ++ WTL P Sbjct: 15 KVPIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCP 74 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 DE L D++G +F+ YE YE+Q + + + A LW +L ETG P+I +K Sbjct: 75 DECRGLQDVWGDDFKKLYEEYEKQ-----GRGRKTMKAQKLWFLILQAQIETGTPFICYK 129 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLA 622 D N +S Q+++G + SSNLCTEI +S +E AVCNL SI L N FD+DKL Sbjct: 130 DAANSKSNQKNLGTIVSSNLCTEIIEYTSKDEVAVCNLASIGLPKFVDKNNKTFDFDKLK 189 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + R L+ +ID+ +++++ K SN HR +G+G+ G +L +PY S A ++ Sbjct: 190 EVTKVITRNLNKLIDVGYYSLKECKNSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKL 249 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + E I + A+ AS ELA++ G Y ++ GS +G+ D G+ + + Sbjct: 250 NKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPD---------SG 300 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 WD LK R+ G+RNS ++ PTA+ + I G ++S +P N+Y + +SG+F VV Sbjct: 301 LCDWDSLKDRISKYGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVV 360 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N L+N+L + LWD+ + ++ ++GSI NI IP+D+++++ T +EI +I+ A+ Sbjct: 361 NPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAAD 420 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDG 921 R ++ Q+QSLN++++ + KL ++ W GLKT YYLR++SAT + T+ Sbjct: 421 RGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLL 480 Query: 922 KLNAVPVTDPNSSTHSLGIPSS------------CTSDTECEVC 953 K ++ P + D EC +C Sbjct: 481 KSETKEKDSLETNKRQALEPETQKLIACPLRPTNMKDDEECMMC 524 >gi|310639979|ref|YP_003944737.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] gi|309244929|gb|ADO54496.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] Length = 812 Score = 459 bits (1180), Expect = e-126, Method: Composition-based stats. Identities = 238/811 (29%), Positives = 381/811 (46%), Gaps = 95/811 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFS 205 + + ++F+ R+ + + SGL + ++ + D ++ ++ A + Sbjct: 40 VTKPNNRQLAFDEIRISVYADRVLSGLDKLDKDRLIRGVTSKLRRDEVTGDEISNAFAMA 99 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L+ KE P++ AR LL L ++ T + K+ E + +++G+ Sbjct: 100 ALELVSKEEPDWKFAAARALLTSLYKKAAT---HRRYKSYADEPYGAFYPLITDLVQKGI 156 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + L + + L + + + D F+Y+GL L +RY + +G +E+PQ +M Sbjct: 157 YRQELLDCYTKEQIDELGDSILPQNDLLFDYIGLLTLSERYLANDFDGRVMELPQERYMI 216 Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 +AM L +E ++ + E Y +S+ + +TPT+ N+G + QLSSCF+ TV D L Sbjct: 217 IAMYLMHQEPADKRMELVKEAYWAMSNMYMTAATPTMSNAGKKVAGQLSSCFIDTVDDSL 276 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF + + A L+K GG+G VR G+ I G S GVIP+++ N+TAV+V+Q Sbjct: 277 EGIFDSNTDVARLSKMGGGIGVYLGKVRARGSDIRGHKNTSSGVIPWIRQLNNTAVSVDQ 336 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G RKGA+ YL+ +H D+ FLDL+ N GD+R R HD+ +PDLFM+RV W Sbjct: 337 LGTRKGAIAVYLDVFHKDILAFLDLKLNNGDERMRAHDVFHGVCLPDLFMERVEARGEWN 396 Query: 501 LFSPDEVSD------------------LHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 LF P EV F YE + I + A Sbjct: 397 LFCPHEVKKVMGWKDDKGRPLGLEDFYDEAFGSGSFREKYEEASKHPILSRI----TVPA 452 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------- 593 + + ++++ ETG P++ ++D N +P + G+V+SSNLCTEI N S Sbjct: 453 IDIMKRLMKSQLETGTPYMFYRDTVNRANPNRAHGMVYSSNLCTEIMQNQSATVVEKEEL 512 Query: 594 --------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 + VCNL SI+L D + VR+LDNVIDIN Sbjct: 513 VTKDGQTRIVISKIPGDFVVCNLNSIHLARAVPAGVLD-----RLVPIQVRMLDNVIDIN 567 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + +A+ +N +RA+GLG G L L I + S EAV D E I++ A+ +S+ Sbjct: 568 NIEVLQAQYTNSQYRAVGLGTFGLHHLLALEGIRWESDEAVTYNDHLYEKINYLAVKSSM 627 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+G Y+ F+GS W G + + + W EL + V+ G+R Sbjct: 628 ELAKEKGRYAKFEGSDWATGHYFTSRGYTDGTREGKF----VTTSEWSELAEEVQQNGVR 683 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N+ AIAP + + I G + SIDP Y+ L + + + N +L ++ +W Sbjct: 684 NAWLFAIAPNGSTSIIAGSTASIDPLYELLSYEEKT--TYKIANP--APDLNEKTIW--- 736 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 + TAF +D I AS RQ+ IDQ QS NLY+ Sbjct: 737 ------------------------YYKTAFLLDQHASINMASARQRHIDQGQSFNLYVRP 772 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + + ++ AW G+K+TYY+RSR+ T Sbjct: 773 DIKATEFLELHIHAWKSGMKSTYYVRSRALT 803 >gi|319779631|ref|YP_004130544.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Taylorella equigenitalis MCE9] gi|317109655|gb|ADU92401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Taylorella equigenitalis MCE9] Length = 758 Score = 459 bits (1180), Expect = e-126, Method: Composition-based stats. Identities = 186/798 (23%), Positives = 321/798 (40%), Gaps = 71/798 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + +++ +++ A +GL +VS+ V + YDG+ D++ + Sbjct: 4 NTISVIKRDGRSEPLDLEKIHRVIDWAANGLDNVSTSQVELNSQIQFYDGIQTQDIQETI 63 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI + P+Y + AR + +R++ ++ I+ Sbjct: 64 IKAAADLISTDTPDYQYLAARLAMINIRKKAYGDHVPPHL-----------YDHVSSLIQ 112 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 +GV + + + + + L ++RD+ F Y+ + + +Y ++G E PQ Sbjct: 113 KGVYDKNIISDYSKDEFEEMNSYLVHDRDWDFSYVAVMQMQGKYLVQNRVSGEIYETPQF 172 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L + + K EFY+ S+F TP + T Q SSC L Sbjct: 173 LYVLVAACLFAKYPKDVRLKYIREFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECG 232 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R G+ I G + G IPF K Sbjct: 233 DSLDSINATSSAIVRYVSQRAGIGINAGRIRAEGSPIRGGEARHTGCIPFYKHFQTAVKC 292 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNRLMYERLVKGQ 352 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + FE Y YE+ + R++ + L+ ++ Sbjct: 353 NITLFSPSDVPGLYDAFFEDQDTFEQLYTKYEQDPSIRK----RQVKSNDLFSMLMQERA 408 Query: 555 ETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG +I D CN + SNLC EITL + + G I L Sbjct: 409 STGRIYIQNVDHCNTHGAFDPKKAPIRQSNLCLEITLPTKPLDDINDPKGEIALCTLSAF 468 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D+L VR LD ++D + I+ A+ S R++G+G++ F L Sbjct: 469 NLGAIDSLDELEHLADLVVRALDALLDYQDYPIKAAQISTMNRRSLGVGVINFAYYLAKN 528 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ I ++ E I ++ + AS+ LA+E G +F + + QGV PID+ Sbjct: 529 GAKYSDGSGNAITHQTFEAIQYYLLKASMNLAKEFGPCPAFDETKYSQGVLPIDTYKKSV 588 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + RL WD L+ + G+RNS A+ P+ T + I + I+P + Sbjct: 589 DD----FCKEPLRLDWDTLRVDIVKYGLRNSTLTALMPSETSSQISNATNGIEPPRGLIT 644 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK + G + +LK + T ++ Sbjct: 645 VKQSKDGILKQIVPDYK--------------------------------ELKDKYETLWQ 672 Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYY 902 + M ++ QK++DQ+ S N D +L +A+ G+KT YY Sbjct: 673 LPNMDGYLQIVGIMQKFVDQSISANTNYDPKKFENGLVPMMQLIKDLLKAYKYGVKTLYY 732 Query: 903 LRSRSATSVEKSTLKGVD 920 +R + + T K D Sbjct: 733 HNTRDGSDDIQDTSKEDD 750 >gi|15641269|ref|NP_230901.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590732|ref|ZP_01678063.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 2740-80] gi|121729794|ref|ZP_01682230.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae V52] gi|147674951|ref|YP_001216821.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae O395] gi|153212312|ref|ZP_01948100.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 1587] gi|153823599|ref|ZP_01976266.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae B33] gi|153827302|ref|ZP_01979969.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-2] gi|153829751|ref|ZP_01982418.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 623-39] gi|227081428|ref|YP_002809979.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae M66-2] gi|229505157|ref|ZP_04394667.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae BX 330286] gi|229511171|ref|ZP_04400650.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae B33] gi|229515629|ref|ZP_04405088.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TMA 21] gi|229518290|ref|ZP_04407734.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC9] gi|229521369|ref|ZP_04410788.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TM 11079-80] gi|229525855|ref|ZP_04415260.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229529664|ref|ZP_04419054.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae 12129(1)] gi|229608177|ref|YP_002878825.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio cholerae MJ-1236] gi|254291707|ref|ZP_04962494.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae AM-19226] gi|254848380|ref|ZP_05237730.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|255745653|ref|ZP_05419601.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholera CIRS 101] gi|262159071|ref|ZP_06030183.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae INDRE 91/1] gi|262169429|ref|ZP_06037121.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC27] gi|262191405|ref|ZP_06049593.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae CT 5369-93] gi|297578848|ref|ZP_06940776.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385] gi|298498652|ref|ZP_07008459.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757] gi|9655739|gb|AAF94415.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547413|gb|EAX57524.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 2740-80] gi|121628469|gb|EAX60959.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae V52] gi|124116690|gb|EAY35510.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 1587] gi|126518878|gb|EAZ76101.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae B33] gi|146316834|gb|ABQ21373.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae O395] gi|148874785|gb|EDL72920.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae 623-39] gi|149738793|gb|EDM53135.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-2] gi|150422391|gb|EDN14351.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae AM-19226] gi|227009316|gb|ACP05528.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae M66-2] gi|227013173|gb|ACP09383.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae O395] gi|229333438|gb|EEN98924.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae 12129(1)] gi|229339436|gb|EEO04453.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae bv. albensis VL426] gi|229341467|gb|EEO06470.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TM 11079-80] gi|229345005|gb|EEO09979.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC9] gi|229347398|gb|EEO12358.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae TMA 21] gi|229351136|gb|EEO16077.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae B33] gi|229357380|gb|EEO22297.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae BX 330286] gi|229370832|gb|ACQ61255.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae MJ-1236] gi|254844085|gb|EET22499.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|255736728|gb|EET92125.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholera CIRS 101] gi|262022242|gb|EEY40951.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae RC27] gi|262029256|gb|EEY47908.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae INDRE 91/1] gi|262032694|gb|EEY51244.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio cholerae CT 5369-93] gi|297536442|gb|EFH75275.1| ribonucleoside-diphosphate reductase [Vibrio cholerae RC385] gi|297542985|gb|EFH79035.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MAK 757] gi|327483945|gb|AEA78352.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Vibrio cholerae LMA3894-4] Length = 761 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 193/798 (24%), Positives = 316/798 (39%), Gaps = 71/798 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ A +M +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKM-----------VEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L +S G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A++S+ R +G+G++ + L Sbjct: 469 LGAIESLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD+L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY-- 902 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 903 LRSRSATSVEKSTLKGVD 920 R + +T+K + Sbjct: 734 TRDGAKDEQTDATVKVQE 751 >gi|61806368|ref|YP_214727.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] gi|61563912|gb|AAX46967.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] Length = 768 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 205/830 (24%), Positives = 343/830 (41%), Gaps = 88/830 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ DG+ + R+ IVE AC GL VS V + +DG+ SD++ L+ Sbjct: 5 EINVIKRDGSKAPLDLNRVHHIVEHACRGLAGVSESQVEISSGLQFFDGIKTSDIQEILV 64 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY V AR LL LR++V P + + E+ I+ Sbjct: 65 RSANDLISLEAPNYQYVAARLLLFSLRKQVYGGHPDHPTE---------FVEHIQSCIDR 115 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + + + + ++ L + ++RD+ F Y G++ + D+Y G E PQ Sbjct: 116 NLYDGDILKKYTNDEITELGKYIDHDRDYLFTYAGIRQVVDKYLVQDRSTGEVFETPQFM 175 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M +A L + + K ++Y+ +S TP + T Q +SC L V D Sbjct: 176 YMMIAATLFQDDDKFYRLKYVKKYYDAISKHKINIPTPIMGGVRTPLRQFASCVLVDVDD 235 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ + I G + GV+PFLK T Sbjct: 236 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFEATVRCC 295 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R +++ Sbjct: 296 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSVQISGLFYQRFIEDST 355 Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 TLFSP V DL+D +G + F+ Y YE + + + A L +L ETG Sbjct: 356 ITLFSPHNVPDLYDAFGTDAFDELYVKYENDNSIPK----KVVRAQELVLDLLKERAETG 411 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610 +I D CN S + V SNLC EITL ++ E A+C L +IN+ Sbjct: 412 RLYIMNIDHCNSHSSFKDK--VSMSNLCQEITLPTTPLQHIDGSGEIALCILSAINVGKL 469 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D+L AVR LD +ID + + A++S R++G+G +G L Sbjct: 470 TK-----LDELDDLCELAVRGLDALIDYQQYPVTAAEQSTKNRRSLGIGYIGLAHYLAKN 524 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y S +A ++ + E F +SAS +LA E+G F + + G+ PID+ Sbjct: 525 GAKYDSQKAFDLVHKLTERFQFALLSASNQLAMEKGPCGYFGKTKYADGILPIDTYKNDV 584 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + W+ L+ R+ G+R+S A P+ + + + + I+P L Sbjct: 585 DEI----IPNDLSCDWEFLRGRILEYGLRHSTLSAQMPSESSSIVSNATNGIEPPRDYLS 640 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K + G + + ++ D+ +DG Sbjct: 641 IKKSKKGPLKQIVPSYSTL-----KNNYTLLWDMHNNDG--------------------- 674 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 I+ + QK+ DQA S N +E +++ + + G KT+YY Sbjct: 675 -----YIKVTAIMQKFFDQAISGNWSYNPENYPNNEVPMQQMAMDWLNTYKYGWKTSYYQ 729 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + D K + P T +L + CE C Sbjct: 730 NT-------------YDAKKDGDDDLAPPVPTENLINDILTLEEENCESC 766 >gi|113200700|ref|YP_717863.1| ribonucleotide reductase subunit A [Synechococcus phage syn9] gi|76574599|gb|ABA47164.1| ribonucleotide reductase subunit A [Synechococcus phage syn9] Length = 767 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 198/831 (23%), Positives = 336/831 (40%), Gaps = 92/831 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ GT + + ++ +VE AC GL VS V +DG+ D++ LI Sbjct: 6 TINVIKRSGTAETLDLDKIHTMVEHACKGLAGVSESQVEMNANLQFFDGVETKDIQEILI 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY V AR LL LR+ V E+ + IE Sbjct: 66 RSANDLISLEAPNYQFVAARLLLFGLRKAVYNGHPDGHPPL---------KEHVEKCIER 116 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + + D + L + + ++RD+ F Y G++ + D+Y G E PQ Sbjct: 117 GVYDKTILSKYTDEEWDKLNSFMDHDRDYLFTYAGIRQVVDKYLVQDRSTGEIYETPQFM 176 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M +A L + + + ++YN +S TP + T Q +SC L V D Sbjct: 177 YMMIAATLFQDDDPFYRIEYVKKYYNAISKHRLNIPTPVMAGVRTTLRQFASCVLVDVDD 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ + I GV+PFLK T Sbjct: 237 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRDGEVVHTGVVPFLKKFESTVRCC 296 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ + L+ N G + R ++ + + +F +R N Sbjct: 297 TQNGIRGGSATVHFPIWHTEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFIANKD 356 Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 +LFSP +V L+D +G F+ Y YE+ + + ++I+A L +L ETG Sbjct: 357 ISLFSPHDVPGLYDAFGTPEFDDLYTQYEQDSSIPK----KRINAQELILDLLKERAETG 412 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------SEETAVCNLGSINLLAH 610 +I D CN S + V+ SNLC EITL + E A+C L +IN+ Sbjct: 413 RLYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLQHIDGQGEIALCILSAINVGKL 470 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + ++ D AVR LD++ID + I+ A+ S R++G+G +G L Sbjct: 471 KSLDEIDE-----LCELAVRGLDSLIDYQGYPIKAAEISTLNRRSLGIGFIGLAHYLAKH 525 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y SP+A ++ + E + + AS +A E+G F + + G+ PID+ Sbjct: 526 GAKYNSPKAYKLVHDLTERFQYALLIASNRMAMEKGPCGYFDKTKYSDGILPIDTYKKEI 585 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + ++ W+ L++R+K G+R+S A P+ + + + + I+P L Sbjct: 586 DDI----VSNDLSCDWEFLRERIKQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 641 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K + G + + LK + ++ Sbjct: 642 IKKSKKGPLKQIVPQF--------------------------------NSLKANYDLLWD 669 Query: 851 I-DPMWLIESASRRQKWIDQAQSLNL-----YL--DEPSGKKLDFIYRQAWLMGLKTTYY 902 + I+ S QK+ DQA S N +E ++ + G KT+YY Sbjct: 670 MPSNEGYIKIVSVMQKFFDQAISGNWAYNPENYPNNEVPVSEMAKDLLTTYKYGWKTSYY 729 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T L + + +C+ C Sbjct: 730 ----------QNTYDAKKDAPIEESGDVDKLINEILQ-----SEEDDCDSC 765 >gi|326784254|ref|YP_004324792.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] gi|310003485|gb|ADO97881.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] Length = 765 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 204/830 (24%), Positives = 344/830 (41%), Gaps = 93/830 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L ++ DG N ++ +VE AC+GL VS V + +DG+ +D++ LI Sbjct: 7 ELHVVKRDGEKEVMNLDKVHAMVEHACNGLAGVSESHVEMNSNLQFFDGIKTADIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY V AR LL LR++V E+ + + + Sbjct: 67 RSANDLISLEAPNYQFVAARLLLFGLRKQVYNGHPDGHPPLL---------EHVKKCVGK 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + D + L + + ++RD+ F Y G++ + D+Y G E PQ Sbjct: 118 GVYDGGILSMYTDEEWEKLNSYIDHDRDYLFTYAGIRQVTDKYLVQDRSTGEIYETPQFM 177 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VA L + + + ++Y+ +S TP + T Q +SC L V D Sbjct: 178 YMMVAATLFQNDDRFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ + I G + GV+PFLK T Sbjct: 238 TLDSIFSSDMAIGYYVSQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCC 297 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R N+ Sbjct: 298 TQNGIRGGSATVHFPIWHAEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIANSV 357 Query: 499 WTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 +LFSP +V L+D +G +F+ Y + E+ ++ + ++A L+ +L ETG Sbjct: 358 ISLFSPHDVPGLYDAFGTDDFDELYCDAEQ----NDLIPRKTVNAQKLFLDLLKERAETG 413 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------ETAVCNLGSINLLAH 610 +I D CN S + V+ SNLC EITL + E A+C L +IN+ Sbjct: 414 RMYIMNIDHCNTHSSFKDK--VNMSNLCQEITLPTDPIQHIDGGGEIALCILSAINVGKL 471 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+L AVR LD +ID + + AK+S R++G+G +G L Sbjct: 472 -----KNLDELDELCELAVRGLDALIDYQHYPVAAAKQSTINRRSLGIGYIGLAHYLAKH 526 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y S +A ++ + E + ++AS +A E+G F + + G+ PID+ Sbjct: 527 GANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKKEV 586 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + W+ L+ R+ G+R+S A P+ + + + + I+P L Sbjct: 587 DEI----VPNDLSCDWEYLRGRITEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 642 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK + G + N LK + ++ D+ +DG Sbjct: 643 VKKSKKGPLKQIVPSY-NSLK----NNYTLLWDMHNNDG--------------------- 676 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 I+ + QK+ DQA S N +E ++ + G KT+YY Sbjct: 677 -----YIKVTAVMQKFFDQAISGNWSYNPENYSDNEVPVSEMAKDLLTTYKYGWKTSYYQ 731 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + A + + L T + +C+ C Sbjct: 732 NTYDA------------------KKDGDDENVDKLINELLTTEEEDCDSC 763 >gi|258624429|ref|ZP_05719376.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM603] gi|258583276|gb|EEW08078.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM603] Length = 760 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 191/790 (24%), Positives = 314/790 (39%), Gaps = 69/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ + + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FNHVSKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L +S E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A++S+ R +G+G++ + L Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD+L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKS 914 +R E++ Sbjct: 734 TRDGAKDEQT 743 >gi|262165507|ref|ZP_06033244.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus VM223] gi|262025223|gb|EEY43891.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus VM223] Length = 760 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 191/790 (24%), Positives = 314/790 (39%), Gaps = 69/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ + + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FNHVSKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L +S E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A++S+ R +G+G++ + L Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD+L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFASGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKS 914 +R E++ Sbjct: 734 TRDGAKDEQT 743 >gi|325294458|ref|YP_004280972.1| ribonucleoside-diphosphate reductase, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064906|gb|ADY72913.1| ribonucleoside-diphosphate reductase, alpha subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 765 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 220/794 (27%), Positives = 384/794 (48%), Gaps = 83/794 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+ ++ +G+ N +++ ++ A GL +V++ + S+ + YDG++ ++ +++ Sbjct: 3 KISVVKRNGSKEPLNIEKIRKVINWAAKGL-EVNTLKLESKLKLHFYDGITTREIHKSIV 61 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L +EP++ + R + L +EV ++ + K + Y + +E+ Sbjct: 62 NTALQLTTPEEPDWRILAGRLFIFNLYKEV--SIKRGTSKLAYIGGGKEYLKVLKDLVEK 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 G+ + +S + ++V + LK E DF ++Y G +L RY IE+PQ +M Sbjct: 120 GLYTNEIFKSYSEEEIVKAGDYLKLEYDFLYDYAGANLLAKRYLCIYEDYPIELPQEMYM 179 Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 +A+ LA E ++ +FY+L++ +TP L N + LSSCF+T + D L Sbjct: 180 SIALMLAKDESIDKRMTLVKKFYDLIAGKKLSLATPILINLRRPNGNLSSCFITAMDDSL 239 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + A ++K +GG+G + + +R G+ I G S GV+P++++ ND AVAVNQ Sbjct: 240 DSIMYTANQVAQISKRAGGVGVNLSRIRAQGSWIKKVFGASGGVVPWIRILNDIAVAVNQ 299 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GKR GAV L+ WH+D+ +FL+L+ GD RR+ D+ IPDLFM+RV ++ W Sbjct: 300 EGKRAGAVTVALDVWHLDIFDFLELKTENGDLRRKAFDIFPQVVIPDLFMERVKKDKDWL 359 Query: 501 LFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 L P EV ++L+G+EFE AY E+++ + ++K K L +++L Sbjct: 360 LVDPYEVEKKFGFRLYELWGEEFEKAYVQIEKESYKLKLKKKVKA--KELLKEILKTQVA 417 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------------ 597 TG P+I FKD N +P +H G + + NLC E N ++ Sbjct: 418 TGLPYIFFKDTANRLNPLKHDGYIGNGNLCMESFSNFRPSKSFKTTLEKGKIVSKVEKPG 477 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 CNL SINL + +L +RTAVR+LDN ID+ I ++K N +R Sbjct: 478 LVHTCNLLSINLANI-----ENDKELEDVVRTAVRILDNTIDLTTSPILESKLHNDRYRT 532 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G +G L IPY +++ + DE E I+++ I S+ LA+ERG + +F+GS Sbjct: 533 IGIGTLGLADYLAKREIPYG-KQSLNLIDELYEKIAYYGIDESINLAKERGKFQAFEGSD 591 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W +G+ ++ + R+ L + W + +++K G+RN AIAP + + Sbjct: 592 WSRGI-------IIGKDREYLLKKTHLKEKWLTVLEKLKKYGIRNGQLFAIAPNTSSGLL 644 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G + + P + Y+ N + +L ++ W Sbjct: 645 QGATPGVLPPFSRFYIDKNQKQAVPICPPYL-----KKKFW------------------- 680 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYRQ 891 + + ++ +I+ S Q+W+D S+ NL L K + Sbjct: 681 --------FYRESKFLNQKEVIDVISTIQRWVDSGISMELLFNLNL-GVRAKDIFETVIY 731 Query: 892 AWLMGLKTTYYLRS 905 AW G+KT YY+R+ Sbjct: 732 AWEKGIKTIYYVRT 745 >gi|258620210|ref|ZP_05715249.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM573] gi|262171720|ref|ZP_06039398.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus MB-451] gi|258587568|gb|EEW12278.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio mimicus VM573] gi|261892796|gb|EEY38782.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio mimicus MB-451] Length = 760 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 191/790 (24%), Positives = 314/790 (39%), Gaps = 69/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ + + +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FNHVSKMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L +S E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLENVEDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A++S+ R +G+G++ + L Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD+L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKS 914 +R E++ Sbjct: 734 TRDGAKDEQT 743 >gi|37679428|ref|NP_934037.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio vulnificus YJ016] gi|37198172|dbj|BAC94008.1| ribonucleotide reductase, alpha subunit [Vibrio vulnificus YJ016] Length = 767 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 195/798 (24%), Positives = 318/798 (39%), Gaps = 69/798 (8%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 ++ + +L + DG + + ++L ++ A GL +VS V + YDG++ Sbjct: 2 LGKESRMNQQLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGIT 61 Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 SD+ +I S+ LI +E P+Y + AR + LR++ +E LY Sbjct: 62 TSDIHETIIKSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY- 110 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHING 311 ++ R ++ G + + E +L L L ++RD F Y ++ L +YF ++G Sbjct: 111 DHVARLVDMGKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSG 170 Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 E Q ++ VA L + + FY+ S+F TP + T Q S Sbjct: 171 QIYESAQFLYILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFS 230 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L D L I G+G + +R LG+ I G G IPF K Sbjct: 231 SCVLIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYK 290 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 +QGG R GA + WH + + L+ N G + R M+ + L Sbjct: 291 YFQTAVKCCSQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLM 350 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 +R+ + TLFSP +V L+D + EFE Y YE + A+ ++ Sbjct: 351 YQRLVEGGNITLFSPSDVPGLYDAFFENQAEFERLYVKYE----NDPSIKKETVKALEMF 406 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ++ TG +I D CN SP V V SNLC EI L + + G I Sbjct: 407 TLLMQERASTGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEI 466 Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L D L VR LD ++D + + A KS R +G+G++ Sbjct: 467 ALCTLSAFNLGAINTLDDLKELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVIN 526 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + + E I ++ + ASVELA+E+G F + + +G+ P Sbjct: 527 YAYYLAKHGVKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKGLMP 586 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + L + WD L+ + G+RNS A+ P+ T + I + I Sbjct: 587 IDTYKKDID----LICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNATNGI 642 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + VK++ G V + + ++ ++ +DG + Sbjct: 643 EPPRGYVSVKASKDGILKQVVPDFIEL-----KNNYELLWNIGSNDGYLH---------- 687 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLM 895 QK++DQA S N D KKL A+ Sbjct: 688 ----------------LVGIMQKFVDQAISANTNYDPARYESGKVPMKKLLQDLLTAYKF 731 Query: 896 GLKTTYYLRSRSATSVEK 913 G+KT YY +R E+ Sbjct: 732 GVKTLYYHNTRDGAKDEQ 749 >gi|27366310|ref|NP_761838.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio vulnificus CMCP6] gi|320156820|ref|YP_004189199.1| ribonucleotide reductase of class Ia (aerobic), subunit alpha [Vibrio vulnificus MO6-24/O] gi|27362511|gb|AAO11365.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio vulnificus CMCP6] gi|319932132|gb|ADV86996.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Vibrio vulnificus MO6-24/O] Length = 760 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 195/789 (24%), Positives = 315/789 (39%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++L ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLEKLHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDKHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQAEFERLYVKYE----NDPSIKKETVKALEMFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAEVAPVRQSNLCLEIALPTKPLANVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAINTLDDLKELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASVELA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFHETNYAKGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LICDEPLHYDWDALRAEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFIEL-----KNNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPARYESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R E+ Sbjct: 734 TRDGAKDEQ 742 >gi|261380738|ref|ZP_05985311.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria subflava NJ9703] gi|284796456|gb|EFC51803.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria subflava NJ9703] Length = 759 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 193/786 (24%), Positives = 318/786 (40%), Gaps = 71/786 (9%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 A +K+ DG L N ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 3 AATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI ++ P+Y + AR + LR+ ++ + Sbjct: 63 TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317 E G R + + L + + RD F Y ++ L +Y + E P Sbjct: 112 TEAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171 Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ VAM L + + FY+ +S+F TP + T Q SSC L Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP+EV L+D + EFE Y YE+ + + R + A L+ ++ Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFSTLMQE 407 Query: 553 LFETGHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 TG +I D CN SP HV VH SNLC EI L + + G I L Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPHVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + D+L VR LD ++D + + A+ + R +G+G++ + L Sbjct: 468 AFNLGALNNLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYLA 527 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 588 DLDAVCSEPL----HYDWESLRAGIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK++ G V + LK + T Sbjct: 644 VSVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671 Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTT 900 +++ ++ QK++DQ+ S N Y S K++ A+ G+KT Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTL 731 Query: 901 YYLRSR 906 YY +R Sbjct: 732 YYHNTR 737 >gi|89092732|ref|ZP_01165685.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum sp. MED92] gi|89083244|gb|EAR62463.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanospirillum sp. MED92] Length = 754 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 198/801 (24%), Positives = 317/801 (39%), Gaps = 71/801 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + +++ +V A GL VS V + + ++G+ D+ LI Sbjct: 4 DLMVTKRDGRQEKLDLEKIHKVVIWAADGLNAVSPSEVELKAHLQFFEGMKTFDIHETLI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR+ ++ +E Sbjct: 64 KSAADLISEDAPDYQYLAARLAIFHLRKRAFGQFEPPRL-----------FDHVSAQVEA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + L L ++RD F Y ++ L +Y + G E PQ Sbjct: 113 GRYDKHLIEDYSEAEWETLNGYLDHKRDMNFSYSAVKQLEGKYLVQNRVTGEVYESPQIL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VA L + + FY+ S F TP + T Q SSC L D Sbjct: 173 YMLVAACLFADYPKETRLDYVKRFYDATSLFKLSLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSASIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP EV L+D + EFE Y YE + + + I AV L+ + + Sbjct: 353 ITLFSPHEVPGLYDAFFADQDEFERLYVQYENDPNIRK----QTIKAVELFGILAAERAQ 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPTVAPVKQSNLCLEIALPTKPLQHVNDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D D+L + VR LDN++D + I A S R +G+G+ F L Sbjct: 469 LGALEDLDELDNLADLIVRALDNLLDYQDYPIPAAHTSTMNRRPLGVGVTNFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E + ++ + AS LA+ERG F +++ +G+ PID+ + Sbjct: 529 VKYSDGSANGLVHKTFEAVQYYLLKASNALAKERGKCPKFDETVYSKGLLPIDTYKREVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 E + W+ L++ +K G+RNS A+ P T + I + I+P + V Sbjct: 589 EFCEEPL----HYFWETLREDIKEFGLRNSTLTALMPCETSSQITNSTNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V L+++ ++ D+ + G + Sbjct: 645 KASKDGIMKQVVPGYTE-LREQ----YELLWDIPNNTGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY-- 902 QK++DQ+ S N D+ K+L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQSISANTNYDPSLFPNDKVPMKQLLQDLLTAYKYGVKTLYYHN 733 Query: 903 LRSRSATSVEKSTLKGVDGKL 923 R ++ + +G KL Sbjct: 734 TRDGASDQADDGGCEGGACKL 754 >gi|332974188|gb|EGK11122.1| ribonucleotide-diphosphate reductase alpha subunit [Psychrobacter sp. 1501(2011)] Length = 758 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 183/795 (23%), Positives = 320/795 (40%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 LK+M DG L + ++ ++ A GL +VS V +++ YDG+ D+ + Sbjct: 5 DNLKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI ++ P+Y + AR + LR+ ++ + Sbjct: 65 IKAAADLISEDTPDYQYLAARLAIFHLRKIAYNQFEPPHL-----------FDHVTKLTA 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + + + L + + RD Y + + +Y + + E PQ Sbjct: 114 AGKYDEHILQDYSREEFDELNEYIDHWRDMTLAYAAAEQMAGKYLVQDRVTKTVYESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +M V M L ++E+ FY+ S F TP + T Q SSC L Sbjct: 174 LYMLVGMCLFASYDKSERLHYVKRFYDASSQFKISLPTPIMAGVRTPSRQFSSCVLIECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRTLYTRLIKGQ 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP +V L++ + +FE Y YE+ + + R + A L+ ++ Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEELYTEYEQDENIRK----RHVPAADLFSLLMQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP + SNLC EI L + + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCMEIALPTKPLDNINDEKGEIALCTLSAV 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + L VR LD ++D + ++ A+ + R +G+G++ + L Sbjct: 470 NLGEVQSLDDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A+ + ++ E + ++ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 530 GVKYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDTYKADL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + N +L W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 590 DKI----CNEPLQLDWEALRSEIKEHGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK++ G V ++N + ++ + +DG Sbjct: 646 VKASKDGILKQVVPDILNL-----KDNYELLWQMPNNDG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ + QK+IDQ+ S N + K L A+ +G+KT YY Sbjct: 680 -----YLKLVAVMQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + ++ + Sbjct: 735 NTRDGANDAQADIDD 749 Score = 39.8 bits (91), Expect = 2.5, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69 + ++V+KR+G + D KI + I A EG +V+ Sbjct: 3 HMDNLKVMKRDGRLEPIDLDKIHKVIT---WAAEGLDNVSVSQVE 44 >gi|261377766|ref|ZP_05982339.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria cinerea ATCC 14685] gi|269146055|gb|EEZ72473.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria cinerea ATCC 14685] Length = 759 Score = 457 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 192/783 (24%), Positives = 319/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEPIDLDKIHRVVTWAADGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISQDTPDYQYLAARLAIFHLRKIAYGDFEPPHL-----------YDHVKKLTDS 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + + RD AF Y ++ L +Y + E PQ Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHGRDMAFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNNLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ + Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|254230293|ref|ZP_04923682.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp. Ex25] gi|262393880|ref|YP_003285734.1| ribonucleotide reductase of class Ia (aerobic) subunit alpha [Vibrio sp. Ex25] gi|151937190|gb|EDN56059.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio sp. Ex25] gi|262337474|gb|ACY51269.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio sp. Ex25] Length = 760 Score = 457 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 191/789 (24%), Positives = 311/789 (39%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVSRLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L + ++RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ F L Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + ++ + ASVELA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVELAKEQGKCPSFDETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L+K + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTEL-----KDNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R E+ Sbjct: 734 TRDGAKDEQ 742 >gi|260768283|ref|ZP_05877217.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio furnissii CIP 102972] gi|260616313|gb|EEX41498.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio furnissii CIP 102972] gi|315179990|gb|ADT86904.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio furnissii NCTC 11218] Length = 760 Score = 457 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 192/797 (24%), Positives = 314/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLL-----------DHVSAMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + L E + L + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDKHLLEDYTREEFELLNGFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKATRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKRTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLVNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A+KS R +G+G++ + L Sbjct: 469 LGAIEKLDDFEELAELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYAYYLARHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + ++ + ASV LA+E+G +F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVNLAKEQGKCPAFDETNYAKGLLPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + W+ L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LLCDEPLHYDWNALREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A +K ++ D Sbjct: 734 TRDGAKDDQKDAVQPAD 750 >gi|319638205|ref|ZP_07992968.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102] gi|317400478|gb|EFV81136.1| ribonucleoside-diphosphate reductase [Neisseria mucosa C102] Length = 759 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 191/786 (24%), Positives = 317/786 (40%), Gaps = 71/786 (9%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 A +K+ DG L + ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 3 AATNIKVTKRDGRLEDIDLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI ++ P+Y + AR + LR+ ++ + Sbjct: 63 TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317 + G R + + L + + RD F Y ++ L +Y + E P Sbjct: 112 TDAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171 Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ VAM L + + FY+ +S+F TP + T Q SSC L Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP+EV L+D + EFE Y YE+ + + R + A L+ ++ Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLPATELFSTLMQE 407 Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + D+L VR LD ++D + + A+ + R +G+G++ + L Sbjct: 468 AFNLGALNNLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYLA 527 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + N W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 588 DLDAV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK++ G V + LK + T Sbjct: 644 VSVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671 Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTT 900 +++ ++ QK++DQ+ S N Y S K++ A+ G+KT Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTL 731 Query: 901 YYLRSR 906 YY +R Sbjct: 732 YYHNTR 737 >gi|225075857|ref|ZP_03719056.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens NRL30031/H210] gi|224952803|gb|EEG34012.1| hypothetical protein NEIFLAOT_00880 [Neisseria flavescens NRL30031/H210] Length = 759 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 194/799 (24%), Positives = 321/799 (40%), Gaps = 71/799 (8%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 A +K+ DG L N ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 3 AATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI ++ P+Y + AR + LR+ ++ + Sbjct: 63 TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317 E G R + + L + + RD F Y ++ L +Y + E P Sbjct: 112 TEAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171 Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ VAM L + + FY+ +S+F TP + T Q SSC L Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP+EV L+D + EFE Y YE+ + + R + A L+ ++ Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTQYEQDPNIRK----RTLPATELFSTLMQE 407 Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVASVHQSNLCMEIALPTKPLDNINDAEGEIALCTLS 467 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D D+L VR LD ++D + + A+ + R +G+G++ + L Sbjct: 468 AFNLGALNDLDELEELADLTVRALDALLDYQDYPVAAARTATMNRRTLGIGVINYAYYLA 527 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + N W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 588 DLDAV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK++ G V + LK + T Sbjct: 644 VSVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671 Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTT 900 +++ ++ QK++DQ+ S N Y S K++ A+ G+KT Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTL 731 Query: 901 YYLRSRSATSVEKSTLKGV 919 YY +R ++ ++ Sbjct: 732 YYHNTRDGADDTQADIQDD 750 >gi|325578587|ref|ZP_08148687.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159823|gb|EGC71953.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus parainfluenzae ATCC 33392] Length = 756 Score = 456 bits (1172), Expect = e-125, Method: Composition-based stats. Identities = 198/796 (24%), Positives = 325/796 (40%), Gaps = 71/796 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGTL N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ LY ++ + + G Sbjct: 65 AAADLISKDTPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L + + + + RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDPALLADYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + A Sbjct: 294 QGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGADI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L++ + +FE Y YE+ + + R + AV L+ ++ T Sbjct: 354 TLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP + V SNLC EI L + + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D D+L + AVR LD ++D + + AK+S+ R++G+G++ + L + Sbjct: 470 GKLDDLDELENLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVINYAYYLAKNGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A ++ + E I ++ + AS+ LA+E GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILPIDTYKNDIDS 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 W+ L++ +K G+RNS A+ P+ T + I + I+P ++ +K Sbjct: 590 ----LTQEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V N + ++ D+ +DG + Sbjct: 646 ASKDGILKQVVPDYENL-----SDNYELLWDIPSNDGYLH-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + K L A+ GLKT YY + Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNT 734 Query: 906 RSATSVEKSTLKGVDG 921 R E S DG Sbjct: 735 RD--GAEDSQEDLDDG 748 >gi|117620066|ref|YP_856856.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561473|gb|ABK38421.1| ribonucleoside-diphosphate reductase, alpha subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 767 Score = 456 bits (1172), Expect = e-125, Method: Composition-based stats. Identities = 195/794 (24%), Positives = 321/794 (40%), Gaps = 79/794 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G + ++ +++ A GL +VS V +++ YDG+ +D+ +I Sbjct: 15 LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIK 74 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E+ P+Y + AR + LR++ ++ + ++ G Sbjct: 75 AAADLISEQSPDYQYMAARLAIFHLRKKAYGQFEPPHL-----------YQHVAKLVDMG 123 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + L E + L L + RD F Y ++ L +Y + G E PQ + Sbjct: 124 KYDKHLLEDYSQAEFEELNQHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 183 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 184 ILVAACLFSKYPKDTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 243 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGLG+ I G G IPF K + Sbjct: 244 LDSINATASAIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 303 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH +VE L L+ N G + R M+ I L +R+ + Sbjct: 304 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 363 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP + L+D + +FE Y YE+ + + + AV L+ M+ T Sbjct: 364 TLFSPSDAPGLYDAFFADQDKFEALYVKYEQDPSIRK----KTLKAVDLFSLMMQERAGT 419 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN SP V SNLC EI L + E A+C L + NL Sbjct: 420 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNL 479 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A + L AVR LD ++D + ++ A K + R +G+G++ + L Sbjct: 480 GAIEK-----LEDLEEMADLAVRALDALLDYQDYPLKAAMKGSMNRRTLGIGVINYAYYL 534 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y+ + + + E I ++ + ASV+LA+E G +F + + QG+ PID+ Sbjct: 535 AKNGARYSDGSGLALTHRTFEAIQYYLLKASVQLAREFGPCPAFNETTYAQGILPIDTYK 594 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + N L W+ L++ ++T+G+RNS A+ P+ T + I + I+P Sbjct: 595 KDLDN----LCNEPLHLDWEALREEIRTVGLRNSTLTALMPSETSSQISNATNGIEPPRG 650 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VK++ G V LK + ++ DG + Sbjct: 651 LVSVKASKDGILKQVVPEYDR-LKDQ----YELLWKQPSVDGYLQ--------------- 690 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 QK++DQA S N ++ K+L A+ GLKT Sbjct: 691 -----------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTL 739 Query: 901 YYLRSRSATSVEKS 914 YY +R ++ Sbjct: 740 YYHNTRDGADDAQT 753 >gi|294669613|ref|ZP_06734680.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308526|gb|EFE49769.1| hypothetical protein NEIELOOT_01514 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 759 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 191/786 (24%), Positives = 321/786 (40%), Gaps = 71/786 (9%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 A +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ Sbjct: 3 AAASIKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI ++ P+Y + AR + LR+ ++ + Sbjct: 63 TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FDHVKKL 111 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317 + G R + E + L + + RD F Y ++ L +Y + E P Sbjct: 112 TDAGKYDRHIIEDYSQEEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171 Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ VAM L + + FY+ +S+F TP + T Q SSC L Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407 Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D+L VR LD ++D + +E A+ + R +G+G++ + L Sbjct: 468 AFNLGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLA 527 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 588 DLDAVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK++ G V + LK + T Sbjct: 644 VTVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671 Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 +++ ++ QK++DQ+ S N ++ S K++ A+ G+KT Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQSISANTAYDPSKFEGNKVSMKQMLKDLLTAYKYGVKTL 731 Query: 901 YYLRSR 906 YY +R Sbjct: 732 YYHNTR 737 >gi|261400677|ref|ZP_05986802.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria lactamica ATCC 23970] gi|269209587|gb|EEZ76042.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria lactamica ATCC 23970] Length = 759 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 192/796 (24%), Positives = 326/796 (40%), Gaps = 71/796 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNSYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPSVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNNLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + ++ + ASV LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKGV 919 +R ++ ++ Sbjct: 735 NTRDGADDTQADIQDD 750 >gi|148653375|ref|YP_001280468.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter sp. PRwf-1] gi|148572459|gb|ABQ94518.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychrobacter sp. PRwf-1] Length = 758 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 186/795 (23%), Positives = 327/795 (41%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+M DG L + ++ ++ A GL +VS V +++ YDG+ D+ + Sbjct: 5 DNIKVMKRDGRLEPIDLDKIHKVITWAAEGLDNVSVSQVELKSHIQFYDGIKTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI ++ P+Y + AR + LR+ ++ + E Sbjct: 65 IKAAADLISEDTPDYQYLAARLAIFHLRKIAYNQFEPPHL-----------FDHVTKLTE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + + + + L + + + RD Y + + +Y + + E PQ Sbjct: 114 AGKYDQHILQDYSREEFDELNDYIDHWRDMNLAYAAAEQMAGKYLVQDRVTKTVYESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ V M L ++E+ FY+ S+F TP + T Q SSC L Sbjct: 174 LYVLVGMCLFASYDKSERMHYVKRFYDAASTFKISLPTPIMSGVRTPSRQFSSCVLIECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGNIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINRPLYTRLIKGE 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP +V L++ + +FE Y YE+ + + R + A L+ ++ Sbjct: 354 DIALFSPSDVPGLYEAFFADQDKFEALYTKYEKDDNIRK----RHVPAADLFSLLMQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L + + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLSAV 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + D L VR LD ++D + ++ A+ + R +G+G++ + L Sbjct: 470 NLGEVDSLEDIEEPAELIVRALDALLDYQDYPVKAAENGSMNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ A+ + ++ E + ++ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 530 GTRYSDGSALGLTHQTFEALQYYLLKASNKLAKEKGACPAFNETTYSQGILPIDTYKADL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + N RL W+ L++ +KT G+RNS A+ P+ T + I + I+P + Sbjct: 590 DKV----CNEPLRLDWEALRQEIKTHGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK++ G V ++N + ++ + +DG Sbjct: 646 VKASKDGILKQVVPDILNLKG-----NYELLWQMPNNDG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ + QK+IDQ+ S N + K L A+ +G+KT YY Sbjct: 680 -----YLKLVAVMQKFIDQSISANTNYDPTRFEGNRVPMKVLLKDLLTAYKLGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + ++ + Sbjct: 735 NTRDGANDAQADIDD 749 Score = 38.7 bits (88), Expect = 4.5, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69 + ++V+KR+G + D KI + I A EG +V+ Sbjct: 3 HMDNIKVMKRDGRLEPIDLDKIHKVIT---WAAEGLDNVSVSQVE 44 >gi|241760524|ref|ZP_04758617.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria flavescens SK114] gi|241319028|gb|EER55530.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria flavescens SK114] Length = 759 Score = 455 bits (1171), Expect = e-125, Method: Composition-based stats. Identities = 194/786 (24%), Positives = 320/786 (40%), Gaps = 71/786 (9%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 A +K+ DG L N ++ +V A GLQ+VS V +++ Y+G+ D+ Sbjct: 3 AATNIKVTKRDGRLEDINLDKIHRVVTWAAEGLQNVSVSQVELKSHIQFYNGIRTDDIHE 62 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI ++ P+Y + AR + LR+ ++ + Sbjct: 63 TIIKAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------YDHVKKL 111 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317 E G R + + L + + RD F Y ++ L +Y + E P Sbjct: 112 TEAGKYDRHIIADYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171 Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ VAM L + + FY+ +S+F TP + T Q SSC L Sbjct: 172 QFLYILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +RGLG+ I G + G IPF K+ Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 352 GGNITLFSPNEVPSLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407 Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D+L VR LD ++D + +E A+ + R +G+G++ + L Sbjct: 468 AFNLGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLA 527 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 588 DLDAVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK++ G V + LK ++ T Sbjct: 644 VTVKASKDGILKQVVPEF--------------------------------ETLKDVYETL 671 Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 +++ ++ QK++DQA S N ++ S K++ A+ G+KT Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTL 731 Query: 901 YYLRSR 906 YY +R Sbjct: 732 YYHNTR 737 >gi|91775576|ref|YP_545332.1| ribonucleotide-diphosphate reductase subunit alpha [Methylobacillus flagellatus KT] gi|91709563|gb|ABE49491.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Methylobacillus flagellatus KT] Length = 774 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 189/794 (23%), Positives = 315/794 (39%), Gaps = 69/794 (8%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + +K DG N ++ +++ A GL +VS V +++ YDG+ Sbjct: 13 EPKMTQYESMKATKRDGRQEPINLDKIHRVIDWAAQGLDNVSVSQVELKSHIQFYDGIRT 72 Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + +I S+ LI +E P+Y + AR + LR+ + Sbjct: 73 DVIHETIIKSAADLISEETPDYQYLAARLSIFHLRKIAYGQFEPPHL-----------FD 121 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312 + + E G + + + + L + L + RD F Y ++ L +Y + Sbjct: 122 HVTKLTEMGKYDKHILQDYSREEFDALNDHLDHWRDMNFSYAAVKQLEGKYLVQNRVTKK 181 Query: 313 RIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E PQ +M VAM L + + + FY+ +S+F TP + T Q SS Sbjct: 182 IYESPQFLYMLVAMCLFARYEGKTRLEYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 241 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G + G +PF K+ Sbjct: 242 CVLIECDDSLDSINATTSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAQHTGCLPFYKL 301 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE L L+ N G + R ++ I L Sbjct: 302 FQAAVKSCSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQINRLLY 361 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 +R+ + TLFSP +V L+D + EFE Y YE + R + AV L+ Sbjct: 362 QRLIKGGNITLFSPHDVPGLYDAFFADQDEFERLYTQYEANDSLRK----RIVPAVDLFS 417 Query: 548 KMLTMLFETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ TG +I D CN + V SNLC EI L + G I Sbjct: 418 LLMQERAGTGRIYIQNVDHCNTHSPFNPRLAPVRQSNLCMEIALPTRPLNDINDENGEIA 477 Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L D+L VR LD ++D + ++ A + R++G+G++ + Sbjct: 478 LCTLSAFNLGALESLDELEGLADLVVRALDALLDYQDYPVKAAFNATQKRRSLGVGVINY 537 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y A+ + + E I ++ + ASV+LA+E G +F + + QG+ PI Sbjct: 538 AYYLAKNGTGYTDDAALGLTHRTFEAIQYYLLKASVQLAREFGPCGAFNETTYSQGILPI 597 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + +L W++L+K + G+RNS A+ P+ T + I + I+ Sbjct: 598 DTYKKDLDAV----CQEALQLDWEQLRKDIVAHGLRNSTLTALMPSETSSQIANATNGIE 653 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK + G V + ++ L +DG Sbjct: 654 PPRGLVSVKQSKDGILRQVVPEIERL-----RNQYQLLWSLPNNDG-------------- 694 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896 ++ QK++DQ+ S N D + K+L QA+ +G Sbjct: 695 ------------YLKLVGIMQKFVDQSISSNTNYDPKRFEGGKVPMKQLLKDLLQAYKLG 742 Query: 897 LKTTYYLRSRSATS 910 +KT YY +R S Sbjct: 743 IKTLYYHNTRDGAS 756 >gi|182419342|ref|ZP_02950594.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum 5521] gi|237666539|ref|ZP_04526524.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376673|gb|EDT74245.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum 5521] gi|237657738|gb|EEP55293.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 743 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 239/771 (30%), Positives = 372/771 (48%), Gaps = 91/771 (11%) Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTT 235 S +L + DG+SE + +LI + L EPN+ ++ +L EV Sbjct: 23 SENKLLEALNLIIRDGMSEKHIRKSLIQVALELTTDMEPNWQFAASKIYTYELYDEVR-- 80 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295 + + ++ Y ++ + + G+ + + ++ D++ L +K ERDF F Y Sbjct: 81 --ENRGLNSSEDLYKNYYDFISQLTDRGLYGKYILDNYTKEDILELEKTIKPERDFLFNY 138 Query: 296 LGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352 G+ +L RY + N + +E+PQ FM +AM LA+ E + + A FY++LSS Sbjct: 139 SGINLLSKRYLVQDYNRNPVELPQQMFMGIAMHLAIPEDKSKRVYWAKRFYDVLSSLKAT 198 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT+ N+ QLSSCF+ TV D L GI+ +L A ++K+ GG+G VR LG+ Sbjct: 199 MATPTMSNARKPFYQLSSCFIDTVEDSLEGIYKSLDNFAQVSKFGGGMGIYMGKVRALGS 258 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G S G+IP++K+ NDTAVAV+Q G R G+V +L+ WH D+ EFL +R N GDD Sbjct: 259 SIRGFKGASGGIIPWVKLFNDTAVAVDQLGVRNGSVAIWLDAWHKDIPEFLQIRTNNGDD 318 Query: 473 RRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIAYENY 525 R++ HD+ PDLF K N + W + P E+ L D YG E+E Y Sbjct: 319 RKKAHDVFPGLCYPDLFWKLAENNIDSDWYMMCPHEIKEIKGYSLEDFYGDEWEEKYYEC 378 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 E R +S + R ++ ETG P+ ++D N +P +H G+++SSNLC Sbjct: 379 V----NDERIEKRVMSVKDIVRLIIKSAAETGAPFAFYRDTVNKMNPNKHNGIIYSSNLC 434 Query: 586 TEITLNSSSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLA 622 TEI N S E VCNL S+ L + +++ Sbjct: 435 TEIMQNMSPMEINKSEIINEDGSCIVTQNIIPGDFVVCNLSSVVLGNIDVCS---EEEVD 491 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + T +R +DNVID+N +++ A+ +N +RAIGLG G+ L I + + + Sbjct: 492 YVVETQIRAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNRIHWTEEKHKDF 551 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 ADE E I+++A+ AS+++A+E+GAY+ FK S WD G D + Sbjct: 552 ADEVYERINYYAVKASMKIAKEKGAYNLFKESDWDNG--------------DYFELRGYK 597 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L+K +K GMRN +A+AP + A I G S+ IDP Y++ Sbjct: 598 DEKWCALRKEIKENGMRNGYLLAVAPNGSTATIAGTSEGIDPVMARFYLEEKKGSIIPKT 657 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L DD + A+ ID W ++ Sbjct: 658 APNL-------------------------------NDDNYWYYNPAYNIDQAWSVQMNGI 686 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 RQ+ IDQ QS NLY+ + + +++ +Y +A G+K+ YY+RS+S E Sbjct: 687 RQRHIDQGQSFNLYITNNYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTE 737 >gi|329119973|ref|ZP_08248645.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327463886|gb|EGF10200.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 759 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 196/786 (24%), Positives = 321/786 (40%), Gaps = 71/786 (9%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 A LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ Sbjct: 3 AAENLKVTKRDGRLENIDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHE 62 Query: 201 ALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +I ++ LI +E P+Y + AR + LR+ ++ + Sbjct: 63 TIIKAAADLISQETPDYQYLAARLAIFHLRKIAYGQFEPPHL-----------FDHVKKL 111 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317 E G R + E + L + + RD F Y ++ L +Y + E P Sbjct: 112 TEAGKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETP 171 Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ VAM L + + FY+ +S+F TP + T Q SSC L Sbjct: 172 QFLYVLVAMCLFSKYPKDTRLNYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIE 231 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +RGLGA I G + G IPF K+ Sbjct: 232 CDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLGAEIRGGEAQHTGCIPFFKMFQAAV 291 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 292 KSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIK 351 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 352 GGNITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQE 407 Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 408 RAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLS 467 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D+L VR LD ++D + +E A+ + R +G+G++ + L Sbjct: 468 AFNLGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLA 527 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ Sbjct: 528 KNGVRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKK 587 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + W+ L+ + G+RNS A+ P+ T + I + I+P Sbjct: 588 DLDAVCSEPL----LCDWESLRADIVEHGLRNSTLTALMPSETSSQIANATNGIEPPRGL 643 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + VK++ G V + LK + T Sbjct: 644 VTVKASKDGILKQVVPEF--------------------------------ETLKDAYETL 671 Query: 849 FEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 +++ ++ QK++DQA S N ++ S K++ A+ G+KT Sbjct: 672 WQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTL 731 Query: 901 YYLRSR 906 YY +R Sbjct: 732 YYHNTR 737 >gi|298368553|ref|ZP_06979871.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282556|gb|EFI24043.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 759 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 192/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + + RD F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 355 ITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ + R +G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ + Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTIYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPSKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|89097913|ref|ZP_01170800.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. NRRL B-14911] gi|89087415|gb|EAR66529.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. NRRL B-14911] Length = 769 Score = 455 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 250/793 (31%), Positives = 382/793 (48%), Gaps = 87/793 (10%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES--DLETALIFS 205 + GT ++ +S + + + S + + + + D + S +L LI Sbjct: 20 INPGGTTMNISSAK-PLPLASIDSDFPHLDFQPLYKRAT-QLQDNHTPSNDELLNQLILD 77 Query: 206 SRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S ++I + EP++ V AR L L + + +++T E + GV Sbjct: 78 SLSMISEAEPDWTYVAARLYLSSLYEKA-----AEHRRSTAGESYGPLYGLITDLTDAGV 132 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMR 323 + +L ES ++ + + E+D F Y+ +++L DRY R E+PQ FM Sbjct: 133 YSPVLLESYTKEEIDIIGTYIDPEKDRLFTYIAVKMLADRYLSRDKKKRLFELPQERFMI 192 Query: 324 VAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 ++M L E + E Y LS+ + +TPTL N+G QLSSCF+ TV D L Sbjct: 193 ISMTLNRSEPKERRLSLIKESYWALSNLYMTAATPTLSNAGKNWGQLSSCFIDTVDDSLQ 252 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ + + A L+K GG+G +R G+ I G G S GV+P++K N+TAV+V+Q Sbjct: 253 GIYDSNTDIANLSKNGGGIGVYLGKIRSRGSDIKGFKGASSGVLPWMKQLNNTAVSVDQL 312 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+RKGAV YL+ WH D+ FLD + N GD+R RTHD+ T +PDLFM+ V W L Sbjct: 313 GQRKGAVSVYLDIWHKDIFSFLDSKLNNGDERYRTHDLFTGVCLPDLFMETVEARGDWHL 372 Query: 502 FSPDEVSDLHDLYGKEFEI-------AYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 F P EV + ++F YE + + + A+ + ++++ Sbjct: 373 FDPHEVRSVMGFSLEDFYDEKPGAGSFRVKYEECVANPRLSKQK-VPAIDIMKRIMISQL 431 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SE 595 ETG P++ ++D N ++P +H+G+++ +NLCTEI N S Sbjct: 432 ETGTPFMFYRDEVNRKNPNRHLGMIYCTNLCTEIVQNQSATITKDQREEDGRIIIEKIPG 491 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + VCNL SINL A++ L I VR+LDNVID+N + + +N +RA Sbjct: 492 DFVVCNLSSINLARAAADHV-----LERLIPIQVRMLDNVIDLNTIPVLQGVATNRKYRA 546 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG G+ L L + + + EAV +ADE E I+F I AS+ LA E+G+Y FKGS Sbjct: 547 IGLGTFGWHHLLALKKLRWENEEAVRLADELYEKIAFLTIKASMNLAMEKGSYPGFKGSD 606 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 W G + R +++ WD L + V+ G+RN MA+AP A+ + I Sbjct: 607 WHSGEYFT--------SRGYSSLDSVH--DWDSLMQAVRKNGIRNGYLMAVAPNASTSII 656 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 G S SIDP ++ Y + V +L + W Sbjct: 657 AGSSPSIDPIFRKFYSEEKKDYKIPVTAP----DLNEHTTW------------------- 693 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 + +A+ ID W I S+RQK IDQA S NLY+ + K+L ++ AW Sbjct: 694 --------YYKSAYVIDQHWSILQNSKRQKHIDQAISFNLYVQNNIKAKELLDLHLSAWK 745 Query: 895 MGLKTTYYLRSRS 907 GLKTTYY+RS S Sbjct: 746 NGLKTTYYVRSTS 758 >gi|145298926|ref|YP_001141767.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas salmonicida subsp. salmonicida A449] gi|142851698|gb|ABO90019.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Aeromonas salmonicida subsp. salmonicida A449] Length = 755 Score = 455 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 198/786 (25%), Positives = 319/786 (40%), Gaps = 79/786 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G + ++ +++ A GL +VS V +++ YDG+ +D+ +I Sbjct: 3 LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETVIK 62 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E+ P+Y + AR + LR++ ++ R ++ G Sbjct: 63 ATADLISEQSPDYQYMAARLAIFHLRKKAYGQFEPPHL-----------YQHVARLVDMG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + L + L L + RD F Y ++ L +Y + G E PQ + Sbjct: 112 KYDKHLLTDYTQAEFEELNEHLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 171 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 172 ILVAACLFSKYPKDTRLSYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 231 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGLG+ I G G IPF K + Sbjct: 232 LDSINATASAIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 291 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH +VE L L+ N G + R M+ I L +R+ + Sbjct: 292 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 351 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP + L+D + +FE Y YE+ + + I AV L+ M+ T Sbjct: 352 TLFSPSDAPGLYDAFFADQDKFEALYVKYEQDPAIRK----KTIKAVDLFSLMMQERAGT 407 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN SP V SNLC EI L + E A+C L + NL Sbjct: 408 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNVDDEEGEIALCTLSAFNL 467 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A + L AVR LD ++D + ++ A+K + R +G+G++ + L Sbjct: 468 GAIEK-----LEDLEEMADLAVRALDALLDYQDYPLKAAQKGSMNRRTLGIGVINYAYYL 522 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y+ + + + E I F+ + ASV+LA+E G +F + + QG+ PID+ Sbjct: 523 AKNGARYSDGSGLALTHRTFEAIQFYLLKASVQLAREFGPCPAFNETTYAQGILPIDTYK 582 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + N L W+ L++ +KT+G+RNS A+ P+ T + I + I+P Sbjct: 583 KDLDN----LCNEPLHLDWETLREEIKTVGLRNSTLTALMPSETSSQISNSTNGIEPPRG 638 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VK++ G V LK + ++ DG + Sbjct: 639 LVSVKASKDGILKQVVPEYHR-LKDQ----YELLWKQPSVDGYLQ--------------- 678 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 QK++DQA S N ++ K+L A+ GLKT Sbjct: 679 -----------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTL 727 Query: 901 YYLRSR 906 YY +R Sbjct: 728 YYHNTR 733 >gi|254169166|ref|ZP_04876002.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|289596591|ref|YP_003483287.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197621901|gb|EDY34480.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|289534378|gb|ADD08725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 768 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 215/931 (23%), Positives = 382/931 (41%), Gaps = 177/931 (19%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 + KR+G +D +I+ AI KAF+ ++I L++ R+ ++ Sbjct: 5 IKKRSGDYVLYDRKRIANAIKKAFLETGEVDTP-----EEIADELSKIVEERIQKY---- 55 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 I +E IQD+VE LM+ + + + Y++YRE R VR A+ + + + + Sbjct: 56 EIPSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAKKILGVEDDLKLTVNAIK- 114 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 V EA L+D K +I + R + Sbjct: 115 ---------------VLEARYLLKDEKGK----------------------IIETPRQMF 137 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 + Y + + EV K+ ++ + Sbjct: 138 YRTARYIALVDALYFD----EVFDLSGKQKRRNEVFAGKS-------------------- 173 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 ++ +++ L + + + IE Sbjct: 174 -NLGVYEMDMLKRAYRRLNFKGHMKVDFSEFIRILNDKWD--IIE--------------- 215 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 +R EFY+++ + +F+ ++PTL NS TR QLS+CF+ VPD + GIF A++ Sbjct: 216 ------ERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYA 269 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 AM+ K GG G ++ +R G + T G + G + F++V + + QGGKR+GA Sbjct: 270 AMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMG 329 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 L H D+ EF+ + + + + N + + D FM + ++ + L +P Sbjct: 330 VLSVHHPDILEFI---TSKDSENKVLSNFNISVAVTDEFMDALLRDDYYPLRNPR----- 381 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + ++I A +W ++T ++TG P + F D N + Sbjct: 382 ----------------------NGEEVKRIKARQVWDLIITQAWKTGDPGVIFIDEVNRK 419 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 P +H+G + S+N C E L CNLGSINL N + +DKL I A+ Sbjct: 420 HPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGKIKWDKLRKVIHIAIH 475 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID N + + + ++ R IGLG+MG+ L L IPY S EAVE+A++ M+FI Sbjct: 476 FLDNVIDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFI 535 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 + + AS++LA++RG + +++GS W ++R+ Sbjct: 536 NEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNATTTTIAPTGTI---- 582 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNE 809 + I G S SI+P + +YV+ + G + +N Sbjct: 583 ----------------------SIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEI 620 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 K+R + E ++ ++ GSI N++ +P+D+K+I TA +I P W + + QK++D Sbjct: 621 AKKRGFYSEDLMLEIAKS-GSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDN 678 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVD 920 A S + L + + + ++ +Y A+ + K R +S A + LK + Sbjct: 679 AVSKTVNLRYDATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKADKAIEGILKRKE 738 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951 +L V + ++C D C+ Sbjct: 739 KELLQVKLFPEEYVKLDSTETAACR-DGTCD 768 >gi|91227185|ref|ZP_01261644.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 12G01] gi|269967068|ref|ZP_06181136.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 40B] gi|91188713|gb|EAS75001.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 12G01] gi|269828327|gb|EEZ82593.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio alginolyticus 40B] Length = 760 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 194/789 (24%), Positives = 313/789 (39%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLDKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVSRLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ F L Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + ++ + ASV LA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFDETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L+K + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LICDEALHYDWDSLRKEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTEL-----KDSYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R E+ Sbjct: 734 TRDGAKDEQ 742 >gi|261364562|ref|ZP_05977445.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria mucosa ATCC 25996] gi|288567129|gb|EFC88689.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria mucosa ATCC 25996] Length = 759 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ E+ + + Sbjct: 66 KAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FEHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + + RD F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YILVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 355 ITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ + R +G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ + Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCSEPL----LCDWESLRSDIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|326783255|ref|YP_004323799.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] gi|310005202|gb|ADO99591.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] Length = 770 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 321/782 (41%), Gaps = 68/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +++++ DG N ++ ++VE AC+GL VS V +DG+ SD++ LI Sbjct: 7 EIQVIKRDGVSEPLNLDKIHVMVEHACNGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + PNY V AR LL LR+ V E+ R + Sbjct: 67 RSANDLISLDAPNYQFVAARLLLFSLRKAVYNGHPNGHPPLR---------EHVERCVSR 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 V + D + L + + ++RD+ F Y G++ + D+Y +G E PQ Sbjct: 118 SVYDASILSKYTDEEWEKLNSFMDHDRDYLFTYAGVRQVVDKYLVQDRSSGEVYETPQFM 177 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M +A L + + + ++Y+ +S TP + T Q +SC L V D Sbjct: 178 YMMIAATLFQDDDKFYRLEYVKKYYDAISKHRINIPTPVMAGVRTPLRQFASCVLVDVDD 237 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ I G + GV+PFLK T Sbjct: 238 TLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINTKIRGGEVQHTGVVPFLKKFESTVRCC 297 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ + L+ N G + R ++ + + LF +R N Sbjct: 298 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKLFYERFIANGE 357 Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 +LFSP +V L+D +G + F+ Y YE E + I A L+ +L ETG Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDDLYVRYE----SDEFTPRKTIGAQELFLSLLKERAETG 413 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL---AHFANN 614 ++ D CN S + V+ SNLC EITL + G I L A Sbjct: 414 RLYLMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPISHIDDPKGEIALCILSAINVGK 471 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 + D+L AVR LD +ID + +E AK+S R++G+G +G L Y Sbjct: 472 LKNLDELDELCDLAVRGLDALIDYQEYPVEAAKQSTTNRRSLGVGYIGLAHYLAKHGANY 531 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 + +A ++ + E + ++AS LA E+G F + + G+ PID+ + Sbjct: 532 DTYKAQDLVHKLSERFQYALLTASNRLAMEKGPCGYFGKTKYADGILPIDTYKNDVDEI- 590 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + + W+ L+ R+K G+RNS A P+ + + + + I+P L +K + Sbjct: 591 ---VPNDLQCDWEFLRGRIKEYGLRNSTLSAQMPSESSSVVSNATNGIEPPRAYLSIKKS 647 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G + LK + +++ Sbjct: 648 KKGPLKQIVPQYST--------------------------------LKNAYTLLWDMPNN 675 Query: 855 W-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 I+ + QK+ DQA S N +E + + G KT+YY + Sbjct: 676 DGYIKVTAVMQKFFDQAISGNWSYNPEMYPDNEVPVSVMAQDLLNTYKYGWKTSYYQNTY 735 Query: 907 SA 908 A Sbjct: 736 DA 737 >gi|260598670|ref|YP_003211241.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter turicensis z3032] gi|260217847|emb|CBA32363.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Cronobacter turicensis z3032] Length = 774 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 196/792 (24%), Positives = 320/792 (40%), Gaps = 71/792 (8%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 P+ L + DG+ N ++ +++ A GL +VS V ++ YDG+ Sbjct: 8 HGQVLPMNQSLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIK 67 Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 SD+ +I ++ LI ++ P+Y + AR + LR++ LY Sbjct: 68 TSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYD 117 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311 +E G L + + + + + + RD F Y ++ L +Y + G Sbjct: 118 HVVKM-VELGKYDHHLLQDYSEEEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTG 176 Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 E Q ++ VA L + FY+ +S+F TP + T Q S Sbjct: 177 EIYESAQFLYLLVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFS 236 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L D L I G+G + +R LG+ I G G IPF K Sbjct: 237 SCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYK 296 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + +QGG R GA + WH++VE L L+ N G + R M+ I L Sbjct: 297 HFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLM 356 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 +R+ + TLFSP +V L+D + EFE Y YE+ E ++I A L+ Sbjct: 357 YQRLLKGEDITLFSPSDVPGLYDAFFANQDEFERLYTTYEQD----ESIRKQRIKASELF 412 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 M+ TG +I D CN SP V V SNLC EI L + + + G I Sbjct: 413 SLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDDSGEI 472 Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L D+L AVR LD ++D + I AK+ R +G+G++ Sbjct: 473 ALCTLSAFNLGAIDSLDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVIN 532 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ P Sbjct: 533 YAYYLAKHGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILP 592 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + + WD L++ +KT G+RNS A+ P+ T + I + I Sbjct: 593 IDTYKKDLDAIASEPL----HYDWDALRESIKTHGLRNSTLSALMPSETSSQISNATNGI 648 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P ++ +K++ G V + LK Sbjct: 649 EPPRGHISIKASKDGILRQVVPDY--------------------------------EQLK 676 Query: 843 KIHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWL 894 + +E+ ++ QK+IDQ+ S N D + ++L A+ Sbjct: 677 DKYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPTRFTSGKVPMQQLLKDLLTAYK 736 Query: 895 MGLKTTYYLRSR 906 +G+KT YY +R Sbjct: 737 LGVKTLYYQNTR 748 >gi|330829607|ref|YP_004392559.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas veronii B565] gi|328804743|gb|AEB49942.1| ribonucleotide-diphosphate reductase subunit alpha [Aeromonas veronii B565] Length = 755 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 194/789 (24%), Positives = 314/789 (39%), Gaps = 69/789 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G + ++ +++ A GL +VS V +++ YDG+ +D+ +I Sbjct: 3 LFVTKRNGHKEPIDLDKIHRVLDWAAEGLDNVSVSQVELKSHIQFYDGIRTADIHETIIK 62 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E+ P+Y + AR + LR++ ++ R ++ G Sbjct: 63 ATADLISEQTPDYQYMAARLAIFHLRKKAYGQFEPPHL-----------YQHVARLVDMG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + L E + L L + RD F Y ++ L +Y + G E PQ + Sbjct: 112 KYDKHLLEDYTQAEFEELNTHLDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESPQFLY 171 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 172 ILVAACLFSKYPKDTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 231 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGLG+ I G G IPF K + Sbjct: 232 LDSINATASSIVRYVSQRAGIGINAGRIRGLGSPIRGGEAFHTGCIPFYKYFQTAVKCCS 291 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH +VE L L+ N G + R M+ I L +R+ + Sbjct: 292 QGGVRGGAATLFYPLWHTEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDI 351 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP + L+D + +FE Y YE+ + + + AV L+ M+ T Sbjct: 352 TLFSPSDAPGLYDAFFADQDKFEELYVKYEQDPAIRK----KTLKAVDLFSLMMQERAGT 407 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 408 GRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNNIDDESGEIALCTLSAFNL 467 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + L AVR LD ++D + I AKK + R +G+G++ + L Sbjct: 468 GAIEKLEDLEEMADLAVRALDALLDYQDYPIAAAKKGSMGRRTLGIGVINYAYYLAKNGA 527 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ + + + E I ++ + ASV+LA+E G F + + QG+ PID+ + Sbjct: 528 RYSDGSGLALTHRTFEAIQYYLLKASVQLAREFGPCPLFGETTYAQGILPIDTYKKDLDA 587 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N L W+ L++ +K++G+RNS A+ P+ T + I + I+P + VK Sbjct: 588 ----LCNEPLHLDWESLREEIKSVGLRNSTLTALMPSETSSQISNATNGIEPPRGLVSVK 643 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V LK + ++ DG + Sbjct: 644 ASKDGILKQVVPEYDR-LKDQ----YELLWKQPSVDGYLQ-------------------- 678 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N ++ K+L A+ GLKT YY + Sbjct: 679 ------LVGIMQKFVDQAISANTNYDPARFEGNKVPMKQLLKDLLTAYKYGLKTLYYHNT 732 Query: 906 RSATSVEKS 914 R ++ Sbjct: 733 RDGADDAQT 741 >gi|255065943|ref|ZP_05317798.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sicca ATCC 29256] gi|255049854|gb|EET45318.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria sicca ATCC 29256] Length = 759 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 192/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLENLDLDKIHRVVTWAAEGLKNVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISQDTPDYQYLAARLAIFHLRKIAYGEFEPPHL-----------FDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + + RD F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHIIEDYSREEFDELNAYIDHSRDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YILVAMCLFSKYPQETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L+D + EFE Y YE+ + + R +SA L+ ++ Sbjct: 355 ITLFSPNEVPGLYDAFFADQDEFERLYTKYEQDPNIRK----RTLSATDLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ + R +G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQDYPVEAARTATMNRRTLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + ++ + ASV LA+E GA F +++ QG PID+ + Sbjct: 531 VRYSDDSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCSEPL----LCDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|261211024|ref|ZP_05925314.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC341] gi|260839999|gb|EEX66599.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC341] Length = 760 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 190/790 (24%), Positives = 312/790 (39%), Gaps = 69/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGEYEPPTL-----------FKHVTNMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L +S G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A++S+ R +G+G++ + L Sbjct: 469 LGAIESLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD+L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKS 914 +R E++ Sbjct: 734 TRDGAKDEQT 743 >gi|148978905|ref|ZP_01815225.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales bacterium SWAT-3] gi|145962103|gb|EDK27389.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrionales bacterium SWAT-3] Length = 760 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 191/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ + ++ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVAKLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G L E + L + + ++RD F Y ++ L +YF + E Q Sbjct: 113 GKYDSHLMEDYTKAEFDELDSYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L ++ + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + + FE Y YE + AV L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEELYVKYE----NDPSIKRETVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D LA VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCDEPLHYDWDALREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V +N + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFLNLKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R ++ Sbjct: 734 TRDGAKDDQ 742 >gi|262402401|ref|ZP_06078962.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC586] gi|262351183|gb|EEZ00316.1| ribonucleoside-diphosphate reductase alpha subunit [Vibrio sp. RC586] Length = 760 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 189/790 (23%), Positives = 311/790 (39%), Gaps = 69/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++ A GLQ+VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKEIIDLDKIHRVITWAAEGLQNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ +E+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGEYEPPTL-----------FKHVTNMVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + L E +L + + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L KR+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP + L+D + EFE Y YE + + A+ ++ ++ Sbjct: 353 ITLFSPSDAPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L +S G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A++S+ R +G+G++ + L Sbjct: 469 LGAIQSLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD+L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTRFKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKS 914 +R E++ Sbjct: 734 TRDGAKDEQT 743 >gi|301156449|emb|CBW15920.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus parainfluenzae T3T1] Length = 756 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 198/796 (24%), Positives = 325/796 (40%), Gaps = 71/796 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DGTL N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 5 LMVTKRDGTLEQINLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI K+ P+Y + AR + LR++ LY ++ + + G Sbjct: 65 AAADLISKDTPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L + + + + RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDPALLADYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 174 LLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQSAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + A Sbjct: 294 QGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGADI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L++ + +FE Y YE+ + + R + AV L+ ++ T Sbjct: 354 TLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPNIRK----RSVKAVELFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP + V SNLC EI L + + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L S AVR LD ++D + + AK+S+ R++G+G++ + L + Sbjct: 470 GKLENLDELESLADLAVRALDALLDYQDYPVPAAKRSSLGRRSLGIGVINYAYYLAKNGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A ++ + E I ++ + AS+ LA+E GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANDLTHRTFEAIQYYLLKASMNLAKELGACEYFNETNYAKGILPIDTYKNDIDS 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 W+ L++ +K G+RNS A+ P+ T + I + I+P ++ +K Sbjct: 590 ----LTQEPLHYDWETLRQEIKEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V N + ++ D+ +DG + Sbjct: 646 ASKDGILKQVVPDYENL-----SDNYELLWDIPSNDGYLH-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + K L A+ GLKT YY + Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNT 734 Query: 906 RSATSVEKSTLKGVDG 921 R E S DG Sbjct: 735 RD--GAEDSQEDLDDG 748 >gi|315634376|ref|ZP_07889663.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter segnis ATCC 33393] gi|315476966|gb|EFU67711.1| ribonucleotide-diphosphate reductase alpha subunit [Aggregatibacter segnis ATCC 33393] Length = 756 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 197/797 (24%), Positives = 325/797 (40%), Gaps = 71/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGTL N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGTLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDHALLDDYTREEWDEMDSFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 353 ITLFSPSDVKGLYEAFFADQDKFEELYVQYEQDPSIRK----RTVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEQGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L + AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L++ ++ G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 S----LTSEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPGNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDG 921 +R E S DG Sbjct: 734 TRD--GAEDSQEDLDDG 748 >gi|326782537|ref|YP_004323091.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] gi|310002751|gb|ADO97150.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] Length = 769 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 203/831 (24%), Positives = 339/831 (40%), Gaps = 91/831 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ +G N ++ +VE AC GL VS V +DG+ SD++ LI Sbjct: 7 EIHVIKRNGEKTPLNLDKVHAMVEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + PNY V AR LL LR+ V E+ + + Sbjct: 67 RSANDLISLDAPNYQFVAARLLLFGLRKAVYNGHPDGHPPLL---------EHVKKCVGI 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + + D + L + + +ERDF F Y G++ + D+Y +G E PQ Sbjct: 118 GVYDSAILQKYTDEEWEKLNDFMDHERDFLFTYAGIRQVTDKYLVQDRSSGEIYETPQFM 177 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VA L + + + ++Y+ +S TP + T Q +SC L V D Sbjct: 178 YMMVAATLFQDDDKFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ A I G + GVIPFLK T Sbjct: 238 TLDSIFSSDMAIGQYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 297 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R QN Sbjct: 298 TQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIQNGT 357 Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 +LFSP +V L+D +G + F+ Y +YE + + A L +L ETG Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDARYVDYESDQSIPR----KTVDAQKLILDLLKERAETG 413 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610 +I D CN S + V+ SNLC EITL + E A+C L +IN+ Sbjct: 414 RVYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLQHIDGQGEIALCILSAINVGKL 471 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+L AVR LD +ID + ++ A++S R++G+G +G L Sbjct: 472 -----KNLDELDELCDLAVRGLDALIDYQEYPVKAAEQSTTNRRSLGIGYIGLAHYLAKN 526 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y S +A ++ + E + ++AS +A E+G F + + G+ PID+ Sbjct: 527 GAKYDSAKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKSDV 586 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + + W+ L+ R+ G+R+S A P+ + + + + I+P L Sbjct: 587 DEI----VPNELQCDWEFLRSRILQYGLRHSTLSAQMPSESSSVVSNATNGIEPPRAYLS 642 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K + G + LK + ++ Sbjct: 643 IKKSKKGPLKQIVPSYTT--------------------------------LKNAYTLLWD 670 Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 + I+ + QK+ DQA S N +E ++ + G KT+YY Sbjct: 671 MHNNDGYIKVTAVMQKFFDQAISGNWSYNPENYPDNEVPVSEMAKDLLNTYKYGWKTSYY 730 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T + T+ ++ L T + +C+ C Sbjct: 731 ----------QNTYDIKKDGDDEEVKTNVDNLIDELLN----TEEEDCDSC 767 >gi|200388863|ref|ZP_03215475.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605961|gb|EDZ04506.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 761 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 195/783 (24%), Positives = 316/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE G+ +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NGDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|210616054|ref|ZP_03290926.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787] gi|210149962|gb|EEA80971.1| hypothetical protein CLONEX_03145 [Clostridium nexile DSM 1787] Length = 749 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 236/785 (30%), Positives = 369/785 (47%), Gaps = 96/785 (12%) Query: 159 SKRLEMIVEEACSGL-QDVSSKIVLSETYKNM-YDGLSESDLETALIFSSRTLIEKE-PN 215 + +E +D+ +L + + LS + LI ++ L +E P Sbjct: 14 FTEIASYMEAIQKDFPEDIYYLGILEDKFLTFQKPELSIEENLQLLIKAAVELTTQEAPK 73 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 + + AR LL RE+ + ++ L + + E+ Sbjct: 74 WEMIAARLLLFTFERELRKAEESCQITTLYEKIVYLTGRGL--------YGQYILENYTK 125 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-T 333 ++ L ER+ F Y GL++L +RY +H G +E PQ F+ +AM LA+KE Sbjct: 126 EEIDEFETFLAPERNDLFTYSGLELLLNRYVIHTGQGVALESPQEMFLGIAMHLAMKEQK 185 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 ++ FY++LS +TPTL N+ + QLSSCF+ VPD L GI+ ++ A + Sbjct: 186 DRALWVKRFYDMLSKLQVTMATPTLSNARKPYHQLSSCFIDIVPDSLNGIYRSIDNFAKV 245 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G R+GAV YL+ Sbjct: 246 SKFGGGMGMYFGKVRASGSAIRGFEGAAGGVIRWIRLANDTAVAVDQLGVRQGAVAVYLD 305 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV---- 507 WH D+ EFL+LR N GDDR + HD+ A PD F ++ N W L P E+ Sbjct: 306 VWHRDLPEFLNLRTNNGDDRMKAHDVFPAVCYPDYFWEQARDNIEGDWYLMCPHEILTVK 365 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+ ++ Y + + + R + + R ++ ETG P+ +D Sbjct: 366 GYALEDCYGEAWKEKYLDCVQDDQIKK----RVVPIKDIIRLIIKSAVETGTPFTFNRDH 421 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAVCNLG 603 N +P H G+++ SNLCTEI N S E VCNL Sbjct: 422 VNRMNPNGHKGMIYCSNLCTEIAQNMSGIEEVEERVETVNGETVVVTVTKPGEFVVCNLA 481 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S++L D +++A + AVR LDNVID+N + AK +N +R IGLG+ G+ Sbjct: 482 SLSLGHLNVE---DGEEIADITKCAVRALDNVIDLNFFPVPYAKINNEKYRPIGLGVSGY 538 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S + ++ + I + AI AS E+A+E+G+Y+ F+GS W G Sbjct: 539 HHMLAKQGISWESEQHLQFVGDVFSKIHYAAIEASSEIAKEKGSYTYFEGSDWQTGK--- 595 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 W++L+++VK G+RN+ +AIAPT++ + I G S +D Sbjct: 596 -----------YFDKRHLKTEKWNQLREKVKQQGLRNAYLLAIAPTSSTSIIAGTSAGLD 644 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ +G V EL W Sbjct: 645 PIMNRYFLEEKKNGLMPRVAP----ELSMETFW--------------------------- 673 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + A ID W + + RQ+ IDQAQS+NLY+ +E + +K+ +Y AW G+KT YY Sbjct: 674 YYKNAHYIDQKWSVRACGVRQRHIDQAQSMNLYITNEYTFRKVLDLYILAWEEGVKTIYY 733 Query: 903 LRSRS 907 +RS+S Sbjct: 734 IRSKS 738 >gi|261867685|ref|YP_003255607.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413017|gb|ACX82388.1| hypothetical protein D11S_1001 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 756 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 195/797 (24%), Positives = 323/797 (40%), Gaps = 71/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDPSLLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + + R + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYETFFADQDKFEQLYVQYEQDPNIRK----RTVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L + AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKLENLDELDNLADLAVRTLDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L++ ++ G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 S----LTTEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDG 921 +R E S DG Sbjct: 734 TRD--GAEDSQEDLDDG 748 >gi|89074074|ref|ZP_01160575.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium sp. SKA34] gi|89050212|gb|EAR55723.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium sp. SKA34] Length = 755 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 191/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++E A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTESIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ ++ +E+ Sbjct: 64 KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------YDHVKNLVEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + N + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDSHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A L + + FY+ S F TP + T Q SSC L D Sbjct: 173 YILIAAALFNKYPKETRLDYIKRFYDASSLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V ++D + +EFE Y YE+ + I A+ L+ ++ Sbjct: 353 ISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A++S R +G+G++ F L Sbjct: 469 LGAIESLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + E+ E I ++ + ASV LA+E+GA +F + + QG+ PID+ Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPIDTYKKDIN 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + R W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 NICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEYAKYKE-----NYELLWNIGSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R S + Sbjct: 734 TRDGASDSQ 742 >gi|149197801|ref|ZP_01874850.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera araneosa HTCC2155] gi|149139022|gb|EDM27426.1| ribonucleotide-diphosphate reductase alpha subunit [Lentisphaera araneosa HTCC2155] Length = 755 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 194/796 (24%), Positives = 317/796 (39%), Gaps = 69/796 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ DGT + +++ +++ A L VS V ++ +DG++ D+ +I Sbjct: 5 IQVTKRDGTREPIDLEKIHRVIDWAAKDLNHVSVSQVELRSHVQFHDGVTTEDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +E P+Y + AR + LR++ P E+ + +E+G Sbjct: 65 SAADLISEESPDYQYLAARLAIFHLRKKAYGQFDPPPL-----------FEHVTKLVEDG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + L E + + + N L + RD F Y ++ L +Y + G+ E PQ + Sbjct: 114 KYDKHLIEDYTEDEFNEMENALDHWRDLNFSYAAVKQLEGKYLVQNRVTGAIYESPQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M V L + + + FY+ S+F TP + T Q SSC L D Sbjct: 174 MLVGACLFSKYPKETRMDYIIRFYDAASNFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I + G+G + +R LG+ I G IPF K + + Sbjct: 234 LDSINASSSAIVKYVSQRAGIGLNAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH +VE L L+ N G + R ++ L +R+ + Sbjct: 294 QGGVRGGAATVFYPLWHREVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYERLVKKGNI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + ++FE Y YE + A+ L+ + T Sbjct: 354 TLFSPGDVPGLYDAFFEDQEKFEELYIKYE----NDPSIQKETMKAIELFSLFASERAST 409 Query: 557 GHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G ++ D CN Q V + SNLC EI L + E G I L A N Sbjct: 410 GRIYLQNVDHCNTHSPFQADVAPIRQSNLCLEIALPTKPLEHINDENGEIALCTLSAINL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D++ AVR LD+++D + + A+ S+ R +G+G++ F L + Sbjct: 470 GALESLDEMEELTELAVRALDSLLDYQDYPVPAARNSSLNRRTLGIGVINFAYYLAKNGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y++ A + ++ E + +H I AS +LAQE G F + + QG+ P D+ + Sbjct: 530 FYSNGSANNLVHKTFESLQYHLIKASCKLAQELGPCPKFNETTYSQGIMPTDTYKSSVDD 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L WD+LK+ VK GMRNS A+ P+ T + I + I+P + VK Sbjct: 590 FCNEDL----HLDWDQLKEDVKKHGMRNSTLSALMPSETSSQISNATNGIEPPRGLIAVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G V + ++ + + G + Sbjct: 646 QSKDGILKQVVPEIEKYKSYY-----ELLWQMPNNTGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLRS 905 + QK+IDQ S N D K L A+ G+KT YY + Sbjct: 681 ------LVAIMQKFIDQTISANTNYDPSKFEGNMVPMKTLLTDLLTAYKYGVKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVDG 921 R + G G Sbjct: 735 RDGAGDSQEEDDGCAG 750 >gi|313668431|ref|YP_004048715.1| ribonucleotide reductase I alpha chain [Neisseria lactamica ST-640] gi|313005893|emb|CBN87349.1| ribonucleotide reductase I alpha chain [Neisseria lactamica 020-06] Length = 759 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 196/796 (24%), Positives = 326/796 (40%), Gaps = 71/796 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + ASV LA+E GA + FK +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKGV 919 +R ++ ++ Sbjct: 735 NTRDGADDTQADIQDD 750 >gi|325201995|gb|ADY97449.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M01-240149] Length = 753 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 190/782 (24%), Positives = 320/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ ++ + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFLY 169 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGL + I G + G IPF K+ + + Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ T Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAGT 405 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP VH SNLC EI L + + G I L Sbjct: 406 GRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L VR LD ++D + +E A+ S R++G+G++ + L + Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 586 VCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + LK + T +++ Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669 Query: 853 -PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK++DQ+ S N D + S K++ A+ G+KT YY Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHN 729 Query: 905 SR 906 +R Sbjct: 730 TR 731 >gi|194736487|ref|YP_002115348.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194711989|gb|ACF91210.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 780 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 194/791 (24%), Positives = 318/791 (40%), Gaps = 71/791 (8%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + + + L + DG N ++ +++ A GL +VS V ++ YDG+ Sbjct: 15 QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74 Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 SD+ +I ++ LI ++ P+Y + AR + LR++ Sbjct: 75 SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312 + + +E G L E + + + + + ++RD F Y ++ L +Y + G Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183 Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E Q ++ VA L + FY+ +S+F TP + T Q SS Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE L L+ N G + R M+ I L Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 R+ + TLFSP +V L+D + EFE Y YE + +++ AV L+ Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ TG +I D CN SP V V SNLC EI L + G I Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIA 479 Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PI Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 600 DTYKKDLDAI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G V + LK Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683 Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895 + +E+ ++ QK+IDQ+ S N D + ++L A+ Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 744 GVKTLYYQNTR 754 >gi|86148465|ref|ZP_01066755.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] gi|85833762|gb|EAQ51930.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] Length = 760 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 191/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ + ++ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVAKLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G L E + L + ++RD F Y ++ L +YF + E Q Sbjct: 113 GKYDSHLMEDYTKAEFDELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L ++ + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + + FE Y YE + AV L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEELYVKYE----NDPSVKRETVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D LA VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + E + WD L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 LVCEEPL----HYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V +N + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFLNL-----KNNYELLWNIGNNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R ++ Sbjct: 734 TRDGAKDDQ 742 >gi|254507982|ref|ZP_05120110.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] gi|219549090|gb|EED26087.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] Length = 760 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 195/797 (24%), Positives = 322/797 (40%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKESIDLEKIHRVIAWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ + I+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVAKLIDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L + + RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYIDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSVKKETVKAIEMFSILMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + ++ + ASV LA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L++ + T G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTEYKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ +K ++ D Sbjct: 734 TRDGASDDQKDAVQPQD 750 >gi|168237292|ref|ZP_02662350.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197289598|gb|EDY28961.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 761 Score = 452 bits (1163), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|326783481|ref|YP_004324016.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] gi|310004984|gb|ADO99374.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] Length = 769 Score = 452 bits (1163), Expect = e-124, Method: Composition-based stats. Identities = 197/831 (23%), Positives = 329/831 (39%), Gaps = 91/831 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ G + ++ + E AC GL VS V +DG+ SD++ LI Sbjct: 7 EIHVIKRSGEKTPLDLDKIHAMAEHACRGLAGVSESQVEMNANLQFFDGIKTSDIQEILI 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY V AR LL LR+ V E+ + ++ Sbjct: 67 RSANDLISLESPNYQFVAARLLLFSLRKAVYNGHPDGHPPLL---------EHVKKCVDL 117 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + + L + + ++RD+ F Y G++ + D+Y +G E PQ Sbjct: 118 GVYDDGILSKYSKEEWEKLNSFMDHDRDYLFTYAGIRQVADKYLVQDRSSGEVYETPQFM 177 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VA L + + + ++Y+ +S TP + T Q +SC L V D Sbjct: 178 YMMVAATLFQDDDKFYRLEYVKKYYDAISKHRLNIPTPIMAGVRTPLRQFASCVLVDVDD 237 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ A I G + GVIPFLK T Sbjct: 238 TLDSIFSSDMAIGHYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 297 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++++ + L+ N G + R ++ + LF +R N Sbjct: 298 TQNGIRGGSATVHFPIWHQEIQDIIVLKNNKGTEDNRVRKLDYSIQFSKLFYERFISNGI 357 Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 +LFSP +V L+D +G + F+ Y +YE + I A L +L ETG Sbjct: 358 ISLFSPHDVPGLYDAFGTDSFDSLYVDYESDLSIPR----QTIGAQELILSLLKERAETG 413 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------ETAVCNLGSINLLAH 610 +I D CN S + V+ SNLC EITL + E A+C L +IN+ Sbjct: 414 RIYIMNIDHCNTHSSFKDK--VNMSNLCQEITLPTDPINHIDGLGEIALCILSAINVGKL 471 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D+L AVR LD +ID + ++ A+ S R++G+G +G L Sbjct: 472 KS-----LDELDELCELAVRGLDALIDYQQYPVKAAENSTKNRRSLGIGFIGLAHYLAKH 526 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y S +A ++ + E + ++AS +A E+G F + + G+ PID+ Sbjct: 527 GANYDSQKAHDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKKEV 586 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + W+ L+ R+ G+R+S A P+ + + + + I+P L Sbjct: 587 DEI----VPNDLSCDWEYLRGRIVEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 642 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK + G + LK + ++ Sbjct: 643 VKKSKKGPLKQIVPSYTT--------------------------------LKGAYTLLWD 670 Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 + I+ + QK+ DQA S N +E ++ + G KT+YY Sbjct: 671 MHNNDGYIKVTAVMQKFFDQAISGNWSYNPENYSDNEVPVSEMAKDLLTTYKYGWKTSYY 730 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T + S +L + +CE C Sbjct: 731 ----------QNTYDNKKDGDEV----EQTPSVDNLIDQLITEEEDDCESC 767 >gi|218709926|ref|YP_002417547.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio splendidus LGP32] gi|218322945|emb|CAV19122.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Vibrio splendidus LGP32] Length = 760 Score = 452 bits (1163), Expect = e-124, Method: Composition-based stats. Identities = 191/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ + ++ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVTKLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G L E + L + ++RD F Y ++ L +YF + E Q Sbjct: 113 GKYDSHLMEDYTKAEFDELDAYIDHKRDLDFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L ++ + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + + FE Y YE + AV L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEELYVKYE----NDPSVKRETVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D LA VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + E + WD L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 LVCEEPL----HYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V +N + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFLNL-----KNNYELLWNIGNNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R ++ Sbjct: 734 TRDGAKDDQ 742 >gi|322617029|gb|EFY13935.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617665|gb|EFY14564.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624705|gb|EFY21534.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630254|gb|EFY27024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634435|gb|EFY31168.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639145|gb|EFY35837.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640142|gb|EFY36808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645770|gb|EFY42294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651545|gb|EFY47920.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656106|gb|EFY52405.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659458|gb|EFY55705.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665920|gb|EFY62103.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669842|gb|EFY65983.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673827|gb|EFY69924.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678585|gb|EFY74641.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683619|gb|EFY79633.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687695|gb|EFY83665.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196208|gb|EFZ81365.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198376|gb|EFZ83478.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204186|gb|EFZ89197.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208572|gb|EFZ93511.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212338|gb|EFZ97161.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218255|gb|EGA02965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222987|gb|EGA07336.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227422|gb|EGA11587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232250|gb|EGA16353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235717|gb|EGA19801.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241123|gb|EGA25159.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244865|gb|EGA28867.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248576|gb|EGA32507.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251596|gb|EGA35464.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255475|gb|EGA39238.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263077|gb|EGA46623.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268137|gb|EGA51614.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270770|gb|EGA54208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 761 Score = 452 bits (1163), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W +L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|308049657|ref|YP_003913223.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Ferrimonas balearica DSM 9799] gi|307631847|gb|ADN76149.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Ferrimonas balearica DSM 9799] Length = 757 Score = 452 bits (1163), Expect = e-124, Method: Composition-based stats. Identities = 190/795 (23%), Positives = 310/795 (38%), Gaps = 69/795 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + +++ ++ A GL +VS V YDG+ + LI Sbjct: 5 LLVTKRDGRKEPIDLEKIHRVIYWAAMGLDNVSVSQVELAAQIYFYDGIETEAIHETLIK 64 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI P+Y + AR + LR++ ++ + ++ Sbjct: 65 AAADLISADNPDYQYLAARLAVFHLRKKAFGQFEPPHL-----------YDHVTKLVQAR 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L + L + + RD F Y ++ L +Y + G E Q + Sbjct: 114 RYDEHLLADYSREEFDELNAYIDHWRDMKFSYAAIKQLEGKYLVQNRVTGEVYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M VA L + + FY+ S F TP + T Q SSC L D Sbjct: 174 MLVAACLFADYPKDVRLSYVKRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G++PFLK + + Sbjct: 234 LDSISATSTSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGMLPFLKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE+ L L+ N G D R M+ I +R+ + Sbjct: 294 QGGVRGGAATLFYPLWHLEVEDLLVLKNNRGTDANRIRHMDYGVQINRALYQRLIEGGDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + EFE Y+ YE+ + + + A+ L+ ++ T Sbjct: 354 TLFSPSDVPGLYDAFFADQDEFERLYQQYEQDPSIRK----KTVKAITLFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V V SNLC EI L + G I L Sbjct: 410 GRIYIQHVDHCNTHSPFDPRVAPVKQSNLCLEIALPTKPLSHPDDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD+++D + I+ A+ S R +G+G++ F L Sbjct: 470 GAIEQLDELEEMADLAVRALDSLLDYQDYPIKAARISTMNRRTLGIGVINFAYYLAKNGA 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ + ++ E I ++ + ASV LA+E+GA +F + + QG+ PID+ + Sbjct: 530 RYSDGSGNNLTHKTFEAIQYYLLKASVGLAKEKGACPAFNETTYSQGILPIDTY----KK 585 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + L W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 586 ALDAICDEPLHLDWEGLRAEILEHGLRNSTLSALMPSETSSQISNATNGIEPPRGLVSVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G V + L+ + ++ + + G + Sbjct: 646 GSKDGVMKQVVPG-IETLRDQ----YELLWTIPNNTGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N ++ K L A+ GLKT YY + Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPSRYEGNKMPMKVLLQDLMLAYKYGLKTLYYQNT 734 Query: 906 RSATSVEKSTLKGVD 920 R S ++ D Sbjct: 735 RDGQSDSQNKADDND 749 >gi|254169182|ref|ZP_04876017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] gi|197621840|gb|EDY34420.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aciduliprofundum boonei T469] Length = 768 Score = 452 bits (1163), Expect = e-124, Method: Composition-based stats. Identities = 219/931 (23%), Positives = 382/931 (41%), Gaps = 177/931 (19%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 + KR+G +D +I+ AI KAF+ ++I L++ R+ ++ Sbjct: 5 IKKRSGDYVLYDRKRIANAIKKAFLETGEVDTP-----EEIADELSKIVEERIQKY---- 55 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 I +E IQD+VE LM+ + + + Y++YRE R VR A+ + + + + Sbjct: 56 EIPSVEQIQDEVEKLLMEKKYTRTAKAYIVYRETRKKVREAKKILGVEDDLKLTVNAIK- 114 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI 210 + +R L+ Sbjct: 115 ----------------------------------------------------VLEARYLL 122 Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLH 270 + E T R + + E+ L + R K+ L Sbjct: 123 KDEKGRIIETPRQMFYR-----TARYIALVDALYFDEVFDLSGKQKRRNEIFAGKSNLG- 176 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 YERD L Y +++ + F+R+ L Sbjct: 177 ---------------VYERDM---------LKRAYRRLNFKGHMKVDFSEFIRI---LND 209 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 K E+R EFY+++ + +F+ ++PTL NS TR QLS+CF+ VPD + GIF A++ Sbjct: 210 KWDIIEERIKEFYSIMVNRYFIPNSPTLMNSNTRLGQLSACFVLPVPDSIEGIFNAVKYA 269 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 AM+ K GG G ++ +R G + T G + G + F++V + + QGGKR+GA Sbjct: 270 AMIHKSGGGTGFSFSRLRPKGDIVASTMGVASGPLSFMRVFDVATDVIKQGGKRRGANMG 329 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 L H D+ EF+ + + + + N + + D FM + ++ + L +P Sbjct: 330 VLSVHHPDILEFI---TSKDSENKVLSNFNISVAVMDEFMDALLRDDYYPLRNPR----- 381 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + ++I A +W ++T ++TG P + F D N + Sbjct: 382 ----------------------NGEEVKRIKARQVWDLIITQAWKTGDPGVIFIDEVNRK 419 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 P +H+G + S+N C E L CNLGSINL N + + KL I A+ Sbjct: 420 HPVKHLGEIESTNPCGEQPLLPY----ESCNLGSINLSLFVENGKIKWHKLRKVIHIAIH 475 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID N + + + ++ R IGLG+MG+ L L IPY S EAVE+A++ M+FI Sbjct: 476 FLDNVIDANRYPLPQIERMTLLTRKIGLGVMGWAEMLIKLGIPYDSEEAVELAEKVMKFI 535 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 + + AS++LA++RG + +++GS W ++R+ Sbjct: 536 NEESHRASMKLAEKRGVFPAWEGSEW---------WKKGMKIRNATTTTIAPTGTI---- 582 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNE 809 + I G S SI+P + +YV+ + G + +N Sbjct: 583 ----------------------SIIAGTSSSIEPLFAIVYVRRVLEGEELLEINPLFEEI 620 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 K+ + E ++ ++ GSI N++ +P+D+K+I TA +I P W + + QK++D Sbjct: 621 AKKGGFYSEDLMLEIAKS-GSIQNLD-VPEDVKRIFKTAHDIGPSWHVAMQAAFQKYVDN 678 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS--------ATSVEKSTLKGVD 920 A S + L + + + ++ +Y A+ + K R +S A + LK + Sbjct: 679 AVSKTVNLRYDATPEDVEKVYMLAYQLKCKGITIYRDKSKKEQVIDKADKAIEGILKRKE 738 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951 +L V + ++C D C+ Sbjct: 739 KELLQVKLFPEEYVKLDSTETAACR-DGTCD 768 >gi|294787789|ref|ZP_06753033.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella muelleri ATCC 29453] gi|294484082|gb|EFG31765.1| ribonucleoside-diphosphate reductase, alpha subunit [Simonsiella muelleri ATCC 29453] Length = 758 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 195/791 (24%), Positives = 320/791 (40%), Gaps = 72/791 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ +G L N ++ +++ A GL +VS V +++ Y+G+ D+ +I Sbjct: 5 TLKVTKRNGQLEPINLDKIHRVLDWAAEGLNNVSVSQVELKSHIQFYNGIHTKDIHETII 64 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR+ ++ + + Sbjct: 65 KSAADLISEETPDYQYLAARLAIFHLRKIAYGDYTPPHL-----------FDHVNKLVAS 113 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + L + +ERD F Y ++ L +Y + E PQ Sbjct: 114 GKYDKHLLSDYTESEFNELNQYIDHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFL 173 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L +T + FY+ +S F TP + T Q SSC L D Sbjct: 174 YILVAMCLFAKYPQTTRLDYVKRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIECDD 233 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 234 NLDSINATTSAIVKYVSQRAGIGINAGHIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ +N Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINRLLYTRLIKNQN 353 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ E R ++A L+ ++ Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYEQ----TESIRKRTVAASDLFSILMQERAG 409 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 410 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFN 469 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D ++ AVR LD ++D + + AKK+ R +G+G++ + L Sbjct: 470 LGAITDVNEFEPLADLAVRALDALLDYQDYPVLAAKKATMNRRTLGIGVINYAYYLAKNG 529 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + ++ + AS+ LA+E GA F + + QG+ PID+ + Sbjct: 530 VKYSDGSAISLTHRTFEAMQYYLLKASMNLAKEYGACPLFNETTYAQGILPIDTYKADLD 589 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 590 K----FCDEPLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 645 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + T +++ Sbjct: 646 KASKDGILKQVVPEFER--------------------------------LKGQYETLWQM 673 Query: 852 -DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQA S N D ++ A+ G+KT YY Sbjct: 674 GSNDGYLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKTLYYH 733 Query: 904 RSR-SATSVEK 913 +R A V++ Sbjct: 734 NTRDGAEDVQQ 744 >gi|330897026|gb|EGH28547.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. japonica str. M301072PT] Length = 417 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 199/411 (48%), Positives = 271/411 (65%), Gaps = 2/411 (0%) Query: 5 KDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASR 64 ++ G A + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 8 ENSPTGAPQASQTQQDLSATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAAA 67 Query: 65 SIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREE 124 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 68 SSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRDS 127 Query: 125 RSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSE 184 R+ RA ++ + P ++I DG+ + RL IV EAC GL +V + ++ +E Sbjct: 128 RAKERAVRAPEEQVQ-AHPSIRITRADGSFAPLDMGRLNTIVTEACEGLAEVDADLIQTE 186 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 T KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L++ LR E L AT Sbjct: 187 TLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLG-FLGVADSAT 245 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 HHEM LY + Y+ G+K LL+ + +FDL L + +ERD F YLGLQ LYDR Sbjct: 246 HHEMADLYAKALPAYVTAGIKFELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDR 305 Query: 305 YFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 YF+H +G R E+PQ FFMRVAMGLA++E +E RA+EFYNLLSSF +M STPTLFN+GT Sbjct: 306 YFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTL 365 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PQLSSC+LTTVPDDL GI+ A+ +NAML+K++GGLGNDWTPVR LG++I Sbjct: 366 RPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAGGLGNDWTPVRALGSYIK 416 >gi|225023975|ref|ZP_03713167.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC 23834] gi|224943000|gb|EEG24209.1| hypothetical protein EIKCOROL_00842 [Eikenella corrodens ATCC 23834] Length = 759 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 194/795 (24%), Positives = 320/795 (40%), Gaps = 71/795 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ DG L + ++ +V A GL +VS V +++ Y+G+ D+ +I Sbjct: 7 LKVTKRDGRLEPIDLDKIHRVVTWAAQGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 66 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ ++ + EG Sbjct: 67 AAADLISEDTPDYQYLAARLAIFHLRKIAYGQYEPPHL-----------FDHVSKLTAEG 115 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 R + E + + + + RD F Y ++ L +Y + E PQ + Sbjct: 116 KYDRHILEDYSREEFDEIDGYIDHARDMTFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 175 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VAM L + + FY+ +S F TP + T Q SSC L D Sbjct: 176 ILVAMCLFAKYPKATRLDYVKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 235 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGLG+ I G + G IPF K+ + + Sbjct: 236 LDSINATTSAIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 295 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+VE L L+ N G + R ++ I L R+ + Sbjct: 296 QGGVRGGAATLFYPLWHIEVESLLVLKNNRGVEDNRVRQLDYGVQINRLLYTRLIKGGNI 355 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP+EV L+D + EFE Y YE+ + R + A L+ ++ T Sbjct: 356 TLFSPNEVPGLYDAFFADQDEFERLYVQYEQDPAIRK----RVVPATELFSTLMQERAGT 411 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D N SP V SNLC EI L + G I L Sbjct: 412 GRIYIHNVDHSNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFNL 471 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L + AVR LD ++D + I A+K+ R +G+G++ + L + Sbjct: 472 GALENLDELENLSDLAVRALDALLDYQDYPIPAARKATMNRRTLGIGVINYAYYLAKHGV 531 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y++ A+ + + E + ++ + ASV+LA+E GA F +++ +GV PID+ + Sbjct: 532 RYSNDSALALTHRTFEAMQYYLLKASVQLAKEYGACPLFGQTMYAKGVLPIDTYKKDLDS 591 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 592 ICSEPL----HYDWEALRAEIVQHGLRNSTLTALMPSETSSQIANATNGIEPPRGLVSVK 647 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V D LK + T +++ Sbjct: 648 ASKDGILKQVVPEF--------------------------------DRLKNQYETLWQMG 675 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK++DQA S N D K++ A+ GLKT YY Sbjct: 676 GNDGYLKLVGIMQKFVDQAISANTSYDPKRFDGGRVPMKQMLKDLLTAYKFGLKTLYYHH 735 Query: 905 SRSATSVEKSTLKGV 919 +R +S ++ Sbjct: 736 TRDGADDTQSDIQDD 750 >gi|224583239|ref|YP_002637037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467766|gb|ACN45596.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|326624096|gb|EGE30441.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 780 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 194/791 (24%), Positives = 318/791 (40%), Gaps = 71/791 (8%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + + + L + DG N ++ +++ A GL +VS V ++ YDG+ Sbjct: 15 QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74 Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 SD+ +I ++ LI ++ P+Y + AR + LR++ Sbjct: 75 SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312 + + +E G L E + + + + + ++RD F Y ++ L +Y + G Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183 Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E Q ++ VA L + FY+ +S+F TP + T Q SS Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE L L+ N G + R M+ I L Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 R+ + TLFSP +V L+D + EFE Y YE + +++ AV L+ Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ TG +I D CN SP V V SNLC EI L + G I Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479 Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PI Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 600 DTYKKDLDAI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G V + LK Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683 Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895 + +E+ ++ QK+IDQ+ S N D + ++L A+ Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 744 GVKTLYYQNTR 754 >gi|332970338|gb|EGK09330.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella kingae ATCC 23330] Length = 758 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 317/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ +G+L + N ++ +++ A L +VS V +++ Y+G+ D+ +I Sbjct: 5 TLKVTKRNGSLEAINLDKIHRVLDWAAEDLNNVSVSQVEMKSHIQFYNGIRTQDIHETII 64 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR+ ++ + E Sbjct: 65 KSAADLISEDTPDYQYMAARLAIFHLRKIAYGDYTPPHL-----------FDHVTKLTEA 113 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + + + + + ++RD F Y ++ L +Y ++ E PQ Sbjct: 114 GKYDPHILQDYTRAEFDEINQYIDHDRDLTFSYAAVKQLEGKYLVQNRVSKQIYESPQFL 173 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 YMLVAMCLFAKYPKATRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 233 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 234 SLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ +N Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLLYTRLIKNQD 353 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE + R +SA L+ ++ Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYENDPTIRK----RTMSASDLFSILMQERAG 409 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + S G I L Sbjct: 410 TGRIYIQNVDHCNTHSPFNPKVAPVRQSNLCLEIALPTKSLNNINDENGEIALCTLSAFN 469 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+ VR LD ++D + IE A+K+ R +G+G++ + L Sbjct: 470 LGAIENLDEFEPLADLTVRALDALLDYQDYPIEAARKATMNRRTLGIGVINYAYYLAKNG 529 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + ++ + ASV LA+E GA F + + QG+ PID+ + Sbjct: 530 VKYSDGSALGLTHRTFEAMQYYLLKASVNLAKEYGACPLFGETTYSQGILPIDTYKADLD 589 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 590 K----FCDEPLHLDWETLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 645 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V D LK + T +++ Sbjct: 646 KASKDGILKQVVPEF--------------------------------DRLKSQYETLWQM 673 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQA S N D ++ A+ GLKT YY Sbjct: 674 GGNDGYLKLVGVMQKFIDQAISANTSYDPTRFEGGRVPMNQMLKDLLSAYKYGLKTLYYH 733 Query: 904 RSR 906 +R Sbjct: 734 NTR 736 >gi|194444716|ref|YP_002041538.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403379|gb|ACF63601.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 761 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|167549729|ref|ZP_02343488.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325233|gb|EDZ13072.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 761 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVGKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|161613002|ref|YP_001586967.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362366|gb|ABX66134.1| hypothetical protein SPAB_00708 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 780 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 194/791 (24%), Positives = 317/791 (40%), Gaps = 71/791 (8%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + + + L + DG N ++ +++ A GL +VS V ++ YDG+ Sbjct: 15 QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74 Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 SD+ +I ++ LI ++ P+Y + AR + LR++ Sbjct: 75 SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312 + + +E G L E + + + + + ++RD F Y ++ L +Y + G Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183 Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E Q ++ VA L + FY+ +S+F TP + T Q SS Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE L L+ N G + R M+ I L Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 R+ + TLFSP +V L+D + EFE Y YE + +++ AV L+ Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ TG +I D CN SP V V SNLC EI L + G I Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479 Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PI Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + +N W +L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 600 DTYKKDLDAI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G V + LK Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683 Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895 + +E+ ++ QK+IDQ+ S N D + ++L A+ Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 744 GVKTLYYQNTR 754 >gi|204929225|ref|ZP_03220368.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321769|gb|EDZ06968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 761 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS EL++E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELSKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|56412826|ref|YP_149901.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180850|ref|YP_217267.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168261710|ref|ZP_02683683.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466026|ref|ZP_02699896.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817992|ref|ZP_02829992.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197361759|ref|YP_002141395.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127083|gb|AAV76589.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128483|gb|AAX66186.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|195631245|gb|EDX49805.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093235|emb|CAR58680.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205344941|gb|EDZ31705.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349577|gb|EDZ36208.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320086714|emb|CBY96486.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715326|gb|EFZ06897.1| ribonucleotide-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 761 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|168229640|ref|ZP_02654698.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469857|ref|ZP_03075841.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249651|ref|YP_002147233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194456221|gb|EDX45060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197213354|gb|ACH50751.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205335883|gb|EDZ22647.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 761 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W +L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|156975011|ref|YP_001445918.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio harveyi ATCC BAA-1116] gi|156526605|gb|ABU71691.1| hypothetical protein VIBHAR_02733 [Vibrio harveyi ATCC BAA-1116] Length = 760 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 192/797 (24%), Positives = 318/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L + ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDKHILEDYTKAELDELDAYMDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ F L Sbjct: 469 LGAIKSLDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + E + WD L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 LICEEEL----HYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFAEL-----KDNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSGYESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A +K ++ D Sbjct: 734 TRDGAKDDQKDAVQPQD 750 >gi|238913486|ref|ZP_04657323.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 761 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPIVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|205359118|ref|ZP_02667324.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205338509|gb|EDZ25273.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 780 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 194/791 (24%), Positives = 317/791 (40%), Gaps = 71/791 (8%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + + + L + DG N ++ +++ A GL +VS V ++ YDG+ Sbjct: 15 QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74 Query: 196 SDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 SD+ +I ++ LI ++ P+Y + AR + LR++ Sbjct: 75 SDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312 + + +E G L E + + + + + ++RD F Y ++ L +Y + G Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183 Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E Q ++ VA L + FY+ +S+F TP + T Q SS Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE L L+ N G + R M+ I L Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 R+ + TLFSP +V L+D + EFE Y YE + +++ AV L+ Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFS 419 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ TG +I D CN SP V V SNLC EI L + G I Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479 Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PI Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + +N W +L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 600 DTYKKDLDAI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G V + LK Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683 Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895 + +E+ ++ QK+IDQ+ S N D + ++L A+ Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 744 GVKTLYYQNTR 754 >gi|330445622|ref|ZP_08309274.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489813|dbj|GAA03771.1| ribonucleoside-diphosphate reductase, alpha subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 755 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 192/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++E A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ E+ + + Sbjct: 64 KAAADLISEETPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------YEHVKNLVAK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDEHLLEDYTEEEFAVMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A L + + FY+ S F TP + T Q SSC L D Sbjct: 173 YILIAAALFNKYPKETRLDYIKRFYDAASLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V ++D + +EFE Y YE+ + I A+ L+ ++ Sbjct: 353 ISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A++S R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + E+ E I ++ + ASV LA+E+GA +F + + QGV PID+ + Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYAQGVLPIDTYKQDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + R W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEYAKYKE-----NYELLWNIGSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSKQPGGKVPMKLLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R S + Sbjct: 734 TRDGASDNQ 742 >gi|16765604|ref|NP_461219.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992611|ref|ZP_02573708.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|585857|sp|P37426|RIR1_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha; AltName: Full=Protein B1; AltName: Full=Ribonucleoside-diphosphate reductase 1 R1 subunit; AltName: Full=Ribonucleotide reductase 1 gi|295896|emb|CAA51452.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420816|gb|AAL21178.1| ribonucleoside diphosphate reductase 1, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329161|gb|EDZ15925.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247485|emb|CBG25312.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994367|gb|ACY89252.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158835|emb|CBW18348.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913267|dbj|BAJ37241.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223023|gb|EFX48094.1| Ribonucleotide reductase of class Ia aerobic, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130607|gb|ADX18037.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989210|gb|AEF08193.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 761 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|293392276|ref|ZP_06636610.1| ribonucleoside-diphosphate reductase, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952810|gb|EFE02929.1| ribonucleoside-diphosphate reductase, alpha subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 756 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 195/797 (24%), Positives = 322/797 (40%), Gaps = 71/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGKPEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDPSLLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSKYPQETRLDYVRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE + + R + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEQLYVQYELDPNIRK----RTVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIHNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L + AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKLENLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L++ ++ G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 S----LTTEPLHYNWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDG 921 +R E S DG Sbjct: 734 TRD--GAEDSQEDLDDG 748 >gi|197334709|ref|YP_002156002.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio fischeri MJ11] gi|197316199|gb|ACH65646.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio fischeri MJ11] Length = 758 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 197/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G+ N ++ ++ A GL +VS V +++ YDG+ SD+ +I Sbjct: 4 QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + IE Sbjct: 64 KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQFEPPTL-----------FNHVLNLIEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E + + + + RD F Y ++ L +YF + G+ E Q Sbjct: 113 GKYDKHIVEDYTQEEFDLMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKESRLDYIKRFYDATSQFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE YE YE+ + A+ L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFADQAEFERLYEKYEQDTSI----KRETVKAIELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP V SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLSAFN 468 Query: 615 QFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +K L AVR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAIEKLEELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + ASV LA+E+GA +F + + QG+ PIDS + Sbjct: 529 VKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPIDSYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 AICNEEL----HLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFANL-----KNNYELLWNIGSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ +GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYKLGLKTLYYHN 733 Query: 905 SRSATSVEK 913 +R S + Sbjct: 734 TRDGASDSQ 742 >gi|325130343|gb|EGC53109.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis OX99.30304] gi|325136203|gb|EGC58811.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M0579] gi|325208253|gb|ADZ03705.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis NZ-05/33] Length = 759 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 191/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTSQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQ+ S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|194448974|ref|YP_002046331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|207857696|ref|YP_002244347.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194407278|gb|ACF67497.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|206709499|emb|CAR33843.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 761 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W +L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|269963957|ref|ZP_06178266.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi 1DA3] gi|269831300|gb|EEZ85450.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio harveyi 1DA3] Length = 760 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 194/797 (24%), Positives = 321/797 (40%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY + R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-NHVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSIKKETVKAIEMFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ F L Sbjct: 469 LGAIKSLDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + E + WD L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 LICEEEL----HYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFTEL-----KDNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSGYESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A +K ++ D Sbjct: 734 TRDGAKDDQKDAVQPQD 750 >gi|237808190|ref|YP_002892630.1| ribonucleotide-diphosphate reductase subunit alpha [Tolumonas auensis DSM 9187] gi|237500451|gb|ACQ93044.1| ribonucleoside-diphosphate reductase, alpha subunit [Tolumonas auensis DSM 9187] Length = 758 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 203/796 (25%), Positives = 310/796 (38%), Gaps = 69/796 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + D + + ++ +V A GLQ VS V + YDG+ SD+ LI Sbjct: 4 SLMVTKRDNHTEALDLDKIHRVVTWAAEGLQGVSVSQVELSAHIQFYDGIRTSDIHETLI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ E +E Sbjct: 64 KSAADLISEQAPDYQYMAARLAMFHLRKKAYGGFTPPSL-----------FEQVKTQVEA 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + L L +ERD F Y ++ L +Y + G E PQ Sbjct: 113 GRYDQQLLTDYSKEEFDLLDGYLAHERDMHFAYAAVKQLEGKYLLQNRVTGEIYESPQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VA L T + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YMLVAACLFANYPRTTRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ Q Sbjct: 293 SQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEENRVRHMDYGVQINRLMYQRLIQGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP + L+D + EFE Y YE+ + R++ AV L+ ++ Sbjct: 353 ITLFSPSDAPGLYDAFFADQAEFERLYLQYEKDPAIRK----RQMKAVELFSLLMQERAG 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLDHYLDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK R +G+G++ + L Sbjct: 469 LGAIESLDELEPLAELAVRALDALLDYQDYPIPAAKNGAMWRRPLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + ASV+LA+E GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSALGLTHRTFEAIQYYLLKASVKLAKEFGACPRFNETTYAQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD L+ ++ G+RNS A+ P+ T + I + I+P + V Sbjct: 589 D----LCQEPLLLDWDSLRHEIRQHGLRNSTLTALMPSETSSQIANATNGIEPPRGLISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ +DG + Sbjct: 645 KASKDGILRQVVPDYTEL-----KDNYELLWSQPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ GLKT YY Sbjct: 681 -------LVGVMQKFVDQAISANTSYDPSRFEGHKVPMKQLLKDLLTAYKYGLKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVD 920 +R + + D Sbjct: 734 TRDGADDAQLQVAQSD 749 >gi|90581240|ref|ZP_01237038.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum S14] gi|90437611|gb|EAS62804.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio angustum S14] Length = 755 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 190/789 (24%), Positives = 315/789 (39%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++E A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTENIDLDKIHRVIEWAAEGLENVSVSQVELKSHIQFYDGIRTDDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ E+ + + Sbjct: 64 KAAADLISEDTPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------YEHVKNLVAK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + N + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDGHLLEDYTEEEFAVMDNFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A L + + FY+ S F TP + T Q SSC L D Sbjct: 173 YVLIAAALFNKYPKETRLDYIKRFYDASSLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGES 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V ++D + +EFE Y YE+ + I A+ L+ ++ Sbjct: 353 ISLFSPSDVPGMYDAFFADQEEFERLYLKYEQDSSI----KRETIKAIDLFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A++S R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + E+ E I ++ + ASV LA+E+GA +F + + QG+ PID+ Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASVNLAKEQGACPAFNETTYSQGILPIDTYKKDIN 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + R W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 NICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEY-----AKYKDNYELLWNIGNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSKQAGGKVPMKLLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R S + Sbjct: 734 TRDGASDSQ 742 >gi|309379221|emb|CBX22178.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria lactamica Y92-1009] Length = 759 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 196/796 (24%), Positives = 325/796 (40%), Gaps = 71/796 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEPIDLDKIHRVVTWAAKGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTGA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + ASV LA+E GA + FK +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASVNLAKEYGACTLFKQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKGV 919 +R ++ ++ Sbjct: 735 NTRDGADDTQADIQDD 750 >gi|15602582|ref|NP_245654.1| ribonucleotide-diphosphate reductase subunit alpha [Pasteurella multocida subsp. multocida str. Pm70] gi|12721011|gb|AAK02801.1| NrdA [Pasteurella multocida subsp. multocida str. Pm70] Length = 756 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 193/794 (24%), Positives = 316/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG L + ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGHLEPIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDPALLVDYTREEWDEMDSYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSKYPTETRLSYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ R + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEQLYLQYEQDPTIR----QRSVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLQHFHDEKGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AKKS+ R++G+G++ + L Sbjct: 469 LGTLENLDELEGLADLAVRALDALLDYQDYPVIAAKKSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E G F + + QG+ PID+ + Sbjct: 529 VRYSDSSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYSQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 N----LTKEPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ DL +DG + Sbjct: 645 KASKDGILKQVVPEYETLGE-----NYELLWDLPNNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + + Sbjct: 734 TRDGAEDVQEDIDD 747 >gi|56460471|ref|YP_155752.1| ribonucleotide-diphosphate reductase subunit alpha [Idiomarina loihiensis L2TR] gi|56179481|gb|AAV82203.1| Ribonucleotide reductase, alpha subunit [Idiomarina loihiensis L2TR] Length = 776 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 190/833 (22%), Positives = 321/833 (38%), Gaps = 83/833 (9%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +L + G N ++ ++ A GL +VS+ V +++ YDG+ D+ + Sbjct: 3 EQLYVTKRSGEREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETI 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI +E P+Y + AR + LR+ +M + Sbjct: 63 IKAAADLISEEAPDYQYMAARLAIFHLRKRAYGKFEPPRLYDQVKKM-----------VA 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 E L E + + + L + RD F Y ++ L ++Y + G E Q Sbjct: 112 EHRYDEHLLEDYTEAEFDQMDEILDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQF 171 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L ++ + FY+ S F TP + T Q SSC L Sbjct: 172 LYILVAACLFANYPKSTRMDYVKRFYDAASEFKISLPTPIMSGVRTPTRQFSSCVLIEAG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ +R+ ++ Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRTMYQRLIKDD 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + EFE Y YE+ E ++I A+ L+ + Sbjct: 352 YITLFSPSDVPGLYDAFFEDQDEFERLYLQYEQD----ESIRKKRIKAIELFGLFMQERA 407 Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG ++ D CN SP + SNLC EI L + G I L Sbjct: 408 STGRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLSHVNDEEGEIALCTLSAF 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + + + AVR LD+++D + + A + R +G+G++ F L Sbjct: 468 NLGKIENLGEFENLADLAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINFAYYLAKH 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + ++ E I ++ + AS+ LA+ERGA F + + QG+ P D+ Sbjct: 528 GVKYSDGSANGLVHQTFEAIQYYLMQASMNLAKERGACPKFNETTYSQGIMPTDTYKKDL 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + L WD+L+ +K GMRNS A+ P+ T + I + I+P + Sbjct: 588 DKV----CDEPLHLDWDKLRADIKQHGMRNSTLSALMPSETSSQISNATNGIEPPRGFVS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +KS+ G V ++LK + ++ Sbjct: 644 IKSSKDGVTKQVVPDY--------------------------------ENLKDKYELLWQ 671 Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY 902 I + +E QK++DQ S N D + K+L A+ +G+KT YY Sbjct: 672 IPNNKGYLELVGIMQKFVDQTISANTNYDPSKFQAGKVPMKQLLQDLLTAYKLGVKTLYY 731 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953 +T G + + +++ + D +C C Sbjct: 732 ----------HNTRDGAADNQSDIAARKGAAASQAQPTEVIIEEDDDCAGGAC 774 >gi|312885177|ref|ZP_07744857.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] gi|309367190|gb|EFP94762.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio caribbenthicus ATCC BAA-2122] Length = 760 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 194/797 (24%), Positives = 319/797 (40%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ E+ + +E Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FEHVTKLVES 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +LV L + + ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDKHILEDYTQAELVELDSFIDHKRDLDFSYAAVKQLEGKYFVQNRVSGQIFESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKHNRLSYIKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHGESRALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +FE Y YE + + A+ L+ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDKFERLYVQYE----NDDTVKKETVKAIELFSILMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSQVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D A VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAIKSLDDFAELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I +H + ASV LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVNLAKEQGKCPLFHETNYAKGLLPIDTYKKDTD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + WD L++ + G+RNS A+ P+ T + I + I+P + + Sbjct: 589 SI----CDEPLHYDWDSLREEIVEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEFSEYKE-----NYELLWDIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ +K ++ D Sbjct: 734 TRDGASDDQKDAVQPQD 750 >gi|261392426|emb|CAX49971.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide reductase) [Neisseria meningitidis 8013] Length = 759 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|326782932|ref|YP_004323330.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] gi|310004191|gb|ADO98585.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] Length = 772 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 197/829 (23%), Positives = 335/829 (40%), Gaps = 92/829 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + +G + ++ +VE AC GL VS V + +DG+ +D++ LI Sbjct: 14 INVTKREGEKTPLDLNKVHKMVELACEGLAGVSESAVEINSGLQFFDGIKTADIQEILIR 73 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI PNY V AR LL LR+ V E+ + I++G Sbjct: 74 SANDLISLDHPNYQYVAARLLLFGLRKAVYNGHPDGHPPLL---------EHVKKCIDKG 124 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 V + + + L + + ++RD+ F Y G++ + D+Y +G E PQ + Sbjct: 125 VYDSSIVSKYTEEEWEKLNSYIDHDRDYLFTYAGIRQVVDKYLVQDRSSGEVYETPQFMY 184 Query: 322 MRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M VA+ L + + + ++Y+ +S TP + T Q +SC L V D Sbjct: 185 MMVAITLFQDDDKFYRLEYVRKYYDAISKHRLNIPTPIMGGVRTPLRQFASCVLVDVDDT 244 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L IF + G+G + +RG+ + I + GV+PFLK T Sbjct: 245 LDSIFSSDMAIGKYVAQRAGIGINAGRIRGINSKIRSGEVQHTGVVPFLKKFESTVRCCT 304 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R + Sbjct: 305 QNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISQLFYQRFIDDRSI 364 Query: 500 TLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 +LFSP +V L++ +G F+ Y YE + + A L +L ETG Sbjct: 365 SLFSPHDVPGLYEAFGTPEFDDLYVEYENDRAIPR----KTMKAQKLILDLLKERAETGR 420 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------ETAVCNLGSINLLAHF 611 +I D CN S + V+ SNLC EITL + E A+C L +IN+ Sbjct: 421 LYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPIQHIDGSGEIALCILSAINVGKL- 477 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + ++L AVR LD +ID + + AK+S R++G+G +G L Sbjct: 478 ----KNLEELDELCELAVRGLDALIDYQQYPVNAAKQSTLNRRSLGIGYIGLAHYLAKNG 533 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y S +A ++ + E + ++AS +A E+G F + + G+ PID+ + Sbjct: 534 AKYDSQKAFDLVHKLTERFQYALLTASNRMAMEKGPCGYFGKTKYADGILPIDTYKSEVD 593 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ R+K G+R+S A P+ + + + + I+P L V Sbjct: 594 EI----VPNDLSCDWEYLRGRIKEYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLSV 649 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K + G + N LK + ++ D+ +DG Sbjct: 650 KKSKKGPLKQIVPSY-NSLKA----NYTLLWDMHNNDG---------------------- 682 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 I+ + QK+ DQA S N +E + + G KT+YY Sbjct: 683 ----YIKVTAVMQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYKYGWKTSYYQN 738 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + +A D + L + + +C+ C Sbjct: 739 T-----------------YDAKKDGDDEPNVDKLINDILTSEEEDCDSC 770 >gi|260778826|ref|ZP_05887718.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604990|gb|EEX31285.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 760 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 192/797 (24%), Positives = 316/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ R I+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVSRLIDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSIKKESVKAIEMFSILMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASV LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPLFGETNYAKGLLPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L++ + T G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCDEPLHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTE-----YKDNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ +K ++ D Sbjct: 734 TRDGASDDQKDAVQPQD 750 >gi|188590737|ref|YP_001919719.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum E3 str. Alaska E43] gi|188501018|gb|ACD54154.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum E3 str. Alaska E43] Length = 741 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 238/790 (30%), Positives = 375/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216 L+ + + A G++D + K + DG+ +D+ +LI S L EPN+ Sbjct: 2 LKKLCDLAIEGIKDNDGTYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDIEPNW 61 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + +L +V K + Y E+ E + + E+ Sbjct: 62 QYAASTIYMYELYDKVRKNRNLDISK----NLYDNYYEFIKELTERNLYGEYILENYSKE 117 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--T 333 D++ L ++K ERDF F Y G++++ RY + N IE+PQ FM +AM LA+ E Sbjct: 118 DVLELEKEIKPERDFLFNYSGIELVAKRYLVQDFNRKVIELPQQMFMGIAMHLAIPEVKE 177 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 ++ A FYN+LS +TPT+ N+ QLSSCF+ TV D L GI+ +L A + Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G +R LG+ I G G S GVIP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL- 510 WH D+ EFL +R N GDDR++ HD+ PDLF K +N W + P E+ + Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTK 357 Query: 511 ----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D YG+E+E Y + R I L R ++ ETG P+ F+D Sbjct: 358 GYCLEDFYGEEWEAKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDS 413 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603 N +P +H G+++SSNLCTEI N S+ + VCNL Sbjct: 414 ANKMNPNKHNGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLS 473 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + ++L + T +R +DNVID+N +++ A+ +N +R IGLG G+ Sbjct: 474 SLVLGNIDVL---NDEELEYVVETQIRAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGY 530 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + + D+ E I++++I AS+ L++E+G Y F+GS WD G Sbjct: 531 HHMLANNKIHWTEEKHRTFVDKVYERINYYSIKASMNLSKEKGKYELFEGSDWDNG---- 586 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + W +LK+ VK+ GMRN +A+AP + A I G S+ ID Sbjct: 587 ----------NYFELRDYNDEKWIDLKESVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P Y++ L +D Sbjct: 637 PIMARFYLEEKKGSIIPKTAPNL-------------------------------SEDNYW 665 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + TA+ ++ W +E RQ+ IDQ QS NLY+ + + +++ +Y +A G+K+ YY Sbjct: 666 YYNTAYNLEQGWCVEMNGVRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725 Query: 903 LRSRSATSVE 912 +RS+S E Sbjct: 726 VRSKSLEVTE 735 >gi|197262131|ref|ZP_03162205.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240386|gb|EDY23006.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 761 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 315/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLQEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|84386982|ref|ZP_00990006.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio splendidus 12B01] gi|84378272|gb|EAP95131.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio splendidus 12B01] Length = 760 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 190/789 (24%), Positives = 317/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLHNVSVSQVELKAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ + ++ Sbjct: 64 KSAADLISEETPDYQYLAARLSVFHLRKKAYGEYEPPAL-----------YDHVAKLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G L E + L + ++RD F Y ++ L +YF + E Q Sbjct: 113 GKYDSHLMEDYTKAEFEELDAYIDHKRDLNFSYAAVKQLEGKYFVQNRVTKEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L ++ + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFGKYPKSTRLDYIKRFYDASSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRNGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 293 SQGGVRGGAATVFYPLWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYSRLVQGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + + FE Y YE + AV L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFENQERFEALYVKYE----NDPSVKRETVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLSNVEDDEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D LA VR LD ++D + + A+KS R +G+G++ + L Sbjct: 469 LGAINELDDLAELSELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + E + WD L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 LVCEEPL----HYDWDTLREEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V +N + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFLNL-----KDNYELLWNIGTNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYDSGKVPMKQLLKDLLTAYKYGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R ++ Sbjct: 734 TRDGAKDDQ 742 >gi|329298016|ref|ZP_08255352.1| ribonucleotide-diphosphate reductase subunit alpha [Plautia stali symbiont] Length = 761 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 200/782 (25%), Positives = 319/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + LY + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYSQFEPP----------KLYDQIVKM-VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDRHLLEDYSTEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L + E G I L Sbjct: 409 TGRIYVQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I + + AS ELA+E+GA FK + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYWLLKASNELAKEQGACPWFKETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 SV----CNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ ++ +DG + Sbjct: 645 KASKDGVLRQVVPEYER-LKDQ----YELLWEMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPGRFANGKVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|28898708|ref|NP_798313.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio parahaemolyticus RIMD 2210633] gi|153839544|ref|ZP_01992211.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|260363693|ref|ZP_05776477.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus K5030] gi|260879740|ref|ZP_05892095.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|260898786|ref|ZP_05907227.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|260901599|ref|ZP_05909994.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|28806926|dbj|BAC60197.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746925|gb|EDM57913.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|308086602|gb|EFO36297.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus Peru-466] gi|308093358|gb|EFO43053.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AN-5034] gi|308108672|gb|EFO46212.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308113387|gb|EFO50927.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus K5030] gi|328474727|gb|EGF45532.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio parahaemolyticus 10329] Length = 760 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 190/797 (23%), Positives = 316/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG S + ++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRDGRKESIDLDKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------FDHVSRLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L + + ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYSKAELDELDSYIDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPMWHGEARSLMVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQEEFERLYVKYE----NDPSVKKETVKAIEMFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ F L Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + ++ + ASV LA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LICDEELHYDWDSLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTEL-----KNNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRYETGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A +K ++ D Sbjct: 734 TRDGAKDDQKDAVQPQD 750 >gi|323494791|ref|ZP_08099890.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio brasiliensis LMG 20546] gi|323310984|gb|EGA64149.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio brasiliensis LMG 20546] Length = 760 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 195/797 (24%), Positives = 322/797 (40%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G S + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDEYLDHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKETRLDYIKRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSIKKETVKAIEMFSILMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGSIKSLDDFEELSNLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASVELA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVELAKEQGKCPLFDETNYAKGLMPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L++ + T G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LICDEPLHYDWDGLRQEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTE-----YKDNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ +K ++ D Sbjct: 734 TRDGASDDQKDAVQPQD 750 >gi|317048918|ref|YP_004116566.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp. At-9b] gi|316950535|gb|ADU70010.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. At-9b] Length = 761 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 200/782 (25%), Positives = 317/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDQVVKM-VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDRHLLEDYSKEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRATRMDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTTYEKDDSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ P D+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPTDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 SI----CNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWEMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPSRFANGKVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|251792453|ref|YP_003007179.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533846|gb|ACS97092.1| ribonucleoside-diphosphate reductase, alpha subunit [Aggregatibacter aphrophilus NJ8700] Length = 756 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 196/797 (24%), Positives = 324/797 (40%), Gaps = 71/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG L N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGKLEPINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY ++ + + Sbjct: 64 KAAADLISKDTPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDHALLDDYTREEWDEMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++++ +FE Y YE+ + R + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYEVFFADQDKFEELYVQYEQDPSIRK----RAVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLSHINDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L + AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKLDNLDELDNLADLAVRALDALLDYQDYPVIAAKRSSLARRSLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFHETTYAQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L++ ++ G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 S----LTSEPLHYDWESLRRDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPGNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDG 921 +R E S DG Sbjct: 734 TRD--GAEDSQEDLDDG 748 >gi|260772918|ref|ZP_05881834.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP 69.14] gi|260612057|gb|EEX37260.1| ribonucleotide reductase alpha subunit [Vibrio metschnikovii CIP 69.14] Length = 760 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 194/797 (24%), Positives = 317/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++E A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKENIDLDKIHRVIEWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 SS LI +E P+Y + AR + LR++ +E LY ++ + + Sbjct: 64 KSSADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPALY-DHVSAMVAK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G L E + + + + RD F Y ++ L +YF + G E Q Sbjct: 113 GKYDSHLLEDYSAEEFALMDTFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAACLFAKYPKATRLDFVKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYRRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y NYE R + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFQDQDEFERLYVNYE----NDPSIKKRTVKALEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDASVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A+KS R +G+G++ + L Sbjct: 469 LGAIEKLDDFEELAELVVRALDALLDYQDYPLPAARKSTMNRRTLGVGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E + ++ + ASV LA+E+G +F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAMQYYLLKASVLLAKEQGRCPAFNETNYAKGLLPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + WD L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----TLCDEPLHYDWDSLRNEIMEFGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFIKLKE-----NYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSQYDSGKVPMKKLLQDLLTAYKYGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A +K ++ D Sbjct: 734 TRDGAKDDQKDAVQAQD 750 >gi|254672041|emb|CBA04616.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha275] Length = 759 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 191/783 (24%), Positives = 319/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPCVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|332290531|ref|YP_004421383.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium anatis UMN179] gi|330433427|gb|AEC18486.1| ribonucleotide-diphosphate reductase subunit alpha [Gallibacterium anatis UMN179] Length = 756 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 196/797 (24%), Positives = 318/797 (39%), Gaps = 71/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L++ DG L N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLRVTKRDGRLEPINLDKIHRVITWAAEGLNNVSVSQVELRSHIQFYEGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI K+ P+Y + AR + LR++ LY E R + Sbjct: 64 KSAADLISKDTPDYQYLAARLAIFHLRKKAFGHFEPP----------RLY-EQVKRLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDASLLVDYSREEWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAASLFAQYPKETRLNYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSAAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + A Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGAD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+ + ++FE Y YE+ D + R + A+ L+ ++ Sbjct: 353 ITLFSPSDVPGLYAAFFADQEKFEQLYLKYEQDPDIRK----RSVKAIELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLQHIHDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + ++ A+ RA+G+G++ + L Sbjct: 469 LGALNNLDELEDLADLAVRALDALLDYQNYPVKAAEIGAMGRRALGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS +LA+E G F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASNQLAKEFGPCKFFDETTYAKGILPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P + + Sbjct: 589 S----LTKEPLHYDWESLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPDYENLSE-----NYELLWDIPNNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + QK+IDQ+ S N D + K L A+ G+KT YY Sbjct: 681 -------LVAIMQKFIDQSISANTNYDPQRFEDGKVPMKVLLKDLLTAYKYGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDG 921 +R E S DG Sbjct: 734 TRD--GAEDSQEDLDDG 748 >gi|325138280|gb|EGC60849.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis ES14902] gi|325142422|gb|EGC64826.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis 961-5945] gi|325198445|gb|ADY93901.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis G2136] Length = 753 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 192/795 (24%), Positives = 324/795 (40%), Gaps = 71/795 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ ++ + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 170 VLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGL + I G + G IPF K+ + + Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ T Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405 Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V VH SNLC EI L + + G I L Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L VR LD ++D + +E A+ S R++G+G++ + L + Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 586 VCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + LK + T +++ Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKDAYETLWQLP 669 Query: 853 -PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK++DQ+ S N Y S K++ A+ G+KT YY Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYHN 729 Query: 905 SRSATSVEKSTLKGV 919 +R ++ ++ Sbjct: 730 TRDGADDTQADIQDD 744 >gi|308389412|gb|ADO31732.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis alpha710] Length = 759 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 195/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|325204294|gb|ADY99747.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M01-240355] Length = 753 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 321/782 (41%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ ++ + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGL + I G + G IPF K+ + + Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYIRLIKGGNI 349 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ T Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405 Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V VH SNLC EI L + + G I L Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L VR LD ++D + +E A+ S R++G+G++ + L + Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 586 V----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + LK + T +++ Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669 Query: 853 -PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK++DQA S N D + S K++ A+ G+KT YY Sbjct: 670 GNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHN 729 Query: 905 SR 906 +R Sbjct: 730 TR 731 >gi|325200081|gb|ADY95536.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis H44/76] Length = 753 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 192/782 (24%), Positives = 321/782 (41%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ ++ + + G Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAG 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 170 VLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGL + I G + G IPF K+ + + Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ T Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405 Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V VH SNLC EI L + + G I L Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L VR LD ++D + +E A+ S R++G+G++ + L + Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 586 VCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + LK + T +++ Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669 Query: 853 -PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK++DQ+ S N D + S K++ A+ G+KT YY Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYHN 729 Query: 905 SR 906 +R Sbjct: 730 TR 731 >gi|59711809|ref|YP_204585.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio fischeri ES114] gi|59479910|gb|AAW85697.1| ribonucleoside diphosphate reductase 1, alpha subunit [Vibrio fischeri ES114] Length = 758 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 197/789 (24%), Positives = 316/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G+ N ++ ++ A GL +VS V +++ YDG+ SD+ +I Sbjct: 4 QLTVTKRNGSTEKINLDKIHKVITWAAEGLDNVSVSQVEMKSHIQFYDGMKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + IE Sbjct: 64 KAAADLISEDTPDYQYLAARLSVFHLRKKAYGQFEPPTL-----------FNHVLNLIEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E + + + + RD F Y ++ L +YF + G+ E Q Sbjct: 113 GKYDKHIVEDYTQEEFALMDQMIDHNRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKDTRLDYIKRFYDATSQFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE YE YE+ + A+ L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFADQAEFERLYEKYEQDTSI----KRETVKAIELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP V SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLTHVNDEEGEIALCTLSAFN 468 Query: 615 QFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +K L AVR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAIEKLEELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + ASV LA+E+GA +F + + QG+ PIDS + Sbjct: 529 VKYSDGSANGLTHKTFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPIDSYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 AICNEEL----HLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFANL-----KNNYELLWNIGSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ +GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPNIQPNGKVPMKLLLKDLLTAYKLGLKTLYYHN 733 Query: 905 SRSATSVEK 913 +R S + Sbjct: 734 TRDGASDSQ 742 >gi|242238483|ref|YP_002986664.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya dadantii Ech703] gi|242130540|gb|ACS84842.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya dadantii Ech703] Length = 762 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 198/807 (24%), Positives = 319/807 (39%), Gaps = 71/807 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY ++ Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAFGQFEPPT----------LYDHVVNM-VDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDRHLLEDYSQEEFTLMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFTDQDEFERLYVQYEQDDSIRK----KQLKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D +L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAISDLSELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LAQE+GA F + + QG+ P+D+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNVLAQEQGACPWFGETTYAQGILPVDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 SV----CNEALHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +++ Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQA S N D + K+L A+ GLKT YY Sbjct: 673 PSNDGYLQLVGIMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGLKTLYYQ 732 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + L + + Sbjct: 733 NTRDGAEDVQDDLLDTTPQDDGCESGA 759 >gi|325265978|ref|ZP_08132664.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella denitrificans ATCC 33394] gi|324982616|gb|EGC18242.1| ribonucleotide-diphosphate reductase alpha subunit [Kingella denitrificans ATCC 33394] Length = 758 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 196/790 (24%), Positives = 314/790 (39%), Gaps = 71/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L N ++ +++ A +GL +VS V +++ Y+G+ D+ +I Sbjct: 5 TLKVTKRDGRLEPINLDKIHRVLDWAAAGLDNVSVSQVELKSHIQFYNGIRTEDIHETII 64 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR+ ++ R E Sbjct: 65 KSAADLISEETPDYQYLAARLAIFHLRKIAYGEYQPPHL-----------FDHVRRMTEM 113 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD F Y ++ L +Y + E PQ Sbjct: 114 GKYDRHILEDYSKEEFDELNQYINHERDLNFSYAAVKQLEGKYLVQNRVTKQIYESPQFL 173 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S F TP + T Q SSC L D Sbjct: 174 YILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIMSGVRTPTRQFSSCVLIECDD 233 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGLG+ I G + G IPF K+ + Sbjct: 234 SLDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSC 293 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ +N Sbjct: 294 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEENRVRHLDYGVQINKLMYTRLIKNQN 353 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ E R +SA L+ ++ Sbjct: 354 ITLFSPNEVPGLYEAFFADQDEFERLYTQYEQD----ESIRKRTLSASDLFSILMQERAG 409 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L + G I L Sbjct: 410 TGRVYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 469 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D ++ AVR LD ++D + I A K+ R +G+G++ + L Sbjct: 470 LGAISDLNEFEPLADLAVRALDALLDYQDYPIPAAYKATMNRRTLGIGVINYAYYLAKNG 529 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E + +H + AS+ LA+E GA F + + QG+ PID+ + Sbjct: 530 VKYSDGSAINLTHRTFEAMQYHLLKASMNLAKEYGACPLFNETTYAQGILPIDTYKADLD 589 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 590 K----FCDEPLHLDWEGLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 645 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + T +++ Sbjct: 646 KASKDGILKQVVPEFER--------------------------------LKGQYETLWQM 673 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+ DQA S N D ++ A+ G+KT YY Sbjct: 674 GGNDGYLKLVGIMQKFTDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKTLYYH 733 Query: 904 RSRSATSVEK 913 +R + Sbjct: 734 NTRDGADDVQ 743 >gi|254805094|ref|YP_003083315.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha14] gi|254668636|emb|CBA06263.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha14] Length = 759 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQ+ S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|325128286|gb|EGC51170.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis N1568] Length = 753 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 192/795 (24%), Positives = 323/795 (40%), Gaps = 71/795 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 1 MKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETIIK 60 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 61 AAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDAA 109 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 R + E + L + +ERD +F Y ++ L +Y + E PQ + Sbjct: 110 KYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFLY 169 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 170 VLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDDS 229 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGL + I G + G IPF K+ + + Sbjct: 230 LDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSCS 289 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 290 QGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGNI 349 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ T Sbjct: 350 TLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAGT 405 Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V VH SNLC EI L + + G I L Sbjct: 406 GRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFNL 465 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L VR LD ++D + +E A+ S R++G+G++ + L + Sbjct: 466 GALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNGV 525 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 526 RYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLDA 585 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 586 V----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTVK 641 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + LK + T +++ Sbjct: 642 ASKDGILKQVVPEF--------------------------------ETLKNAYETLWQLP 669 Query: 853 -PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK++DQ+ S N Y S K++ A+ G+KT YY Sbjct: 670 GNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYHN 729 Query: 905 SRSATSVEKSTLKGV 919 +R ++ ++ Sbjct: 730 TRDGADDTQADIQDD 744 >gi|269102946|ref|ZP_06155643.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162844|gb|EEZ41340.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 755 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 189/789 (23%), Positives = 318/789 (40%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ +++ A GL++VS V +++ YDG+ D+ +I Sbjct: 4 QLTVTKRDGRTETLDLDKIHRVLDWAAEGLENVSVSQVELKSHIQFYDGMRTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ +E+ Sbjct: 64 KAAADLISEETPDYQYMAARLAIFHLRKKAYGQFEPPTL-----------YKHVSHLVEQ 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTEEEFAVIDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YVLIAACLFAKYPKETRLDYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ E + + A+ L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFADQVEFERLYTQYEQD----ESIKKQSVKAIDLFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYVQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A++S R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELAELTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + E+ E I ++ + AS+ LA+E+GA +F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHEAFEAIQYYLLKASLGLAKEQGACPAFNETTYAQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + R W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KICSAEL----RYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEYTK-----YKDNYELLWNIGGNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPSRQPGGKVPMKLLLKDLLTAYKLGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R S + Sbjct: 734 TRDGASDSQ 742 >gi|296103862|ref|YP_003614008.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058321|gb|ADF63059.1| ribonucleotide-diphosphate reductase alpha subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 761 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 199/782 (25%), Positives = 317/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISREAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRDTRLEYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + E+ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AIANAPL----HLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPDYEQL-----KDNYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|149190929|ref|ZP_01869192.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii AK1] gi|148835284|gb|EDL52258.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio shilonii AK1] Length = 763 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 197/790 (24%), Positives = 317/790 (40%), Gaps = 69/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G S + +++ ++ A GL +VS V + + YDG++ SD+ +I Sbjct: 4 QLTVTKRNGRKESIDLEKIHRVIAWAAEGLNNVSVSQVELKAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ ++ + +E Sbjct: 64 KSAADLISEDAPDYQYLAARLAIFHLRKKAYGQYEPPAL-----------FDHVSKMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G L E +L L + + + RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDAHLLEDYTKSELDELDSYIDHTRDHDFSYAAVKQLEGKYFVQNRVSGQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPKATRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +V+ L L+ N G + R M+ + L R+ Q Sbjct: 293 SQGGVRGGAATVFYPMWHGEVQSLLVLKNNRGVEENRVRHMDYGVQLNKLMYARLVQGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFERLYVKYE----NDPSIKKETVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D L VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAINELDDLKDLSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I +H + ASVELA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANNLTHRTFEAIQYHLLKASVELAKEQGRCPSFHETNYAKGLLPIDTY----K 584 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +L + WD L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 585 NDVDLVCDEPLHYDWDALRSEIMEFGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPDFANLKE-----NYELLWNIGNNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSVYESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKS 914 +R ++S Sbjct: 734 TRDGAKDDQS 743 >gi|121635005|ref|YP_975250.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis FAM18] gi|120866711|emb|CAM10463.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis FAM18] gi|325132506|gb|EGC55199.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M6190] Length = 759 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 193/796 (24%), Positives = 324/796 (40%), Gaps = 71/796 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKDAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQ+ S N Y S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKGV 919 +R ++ ++ Sbjct: 735 NTRDGADDTQADIQDD 750 >gi|326783874|ref|YP_004324268.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] gi|310003886|gb|ADO98281.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] Length = 766 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 192/830 (23%), Positives = 347/830 (41%), Gaps = 91/830 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ G + + +++ +VE AC GL VS+ V ++ YDG++ ++++ L+ Sbjct: 5 IKVVKRAGHIEPLDLEKMHKMVELACDGLAGVSASQVEIQSGIQFYDGMTTAEIQGILVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI+ + PNY V AR LL LR+ + +++ P R +++G Sbjct: 65 SASDLIDLDAPNYQYVAARLLLFGLRKNLYGRIHELPTLLDQ----------IKRGVDKG 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + ++ L + +ERD+ F Y GL+ + D+Y G+ E PQ + Sbjct: 115 IYDGDILNKYTKSEIEDLDKIIDHERDYLFTYAGLRQVVDKYLVQDRSTGALYETPQFMY 174 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + +AM + + +YN +S TP + T Q +SC L V D Sbjct: 175 LLIAMTIFAEYPPENRIDYVTRYYNAISRHKINIPTPIMGGVRTPIRQFASCVLVDVDDT 234 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L IF + G+G + +RG+ + I G + GV+PFLK T Sbjct: 235 LDSIFSSDMAIGRYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKFESTVRCCT 294 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R ++ Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFIEDKEI 354 Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 TLFSP +L + +G +F+ Y YE E RK+ A L +L ETG Sbjct: 355 TLFSPHSCPNLFESFGTPDFDELYCRYE----LDESIPKRKVRAQELIMNLLKERAETGR 410 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLAH 610 +I D CN S + V SNLC EITL + E A+C L +IN+ Sbjct: 411 IYIMNIDHCNDHSSFKDK--VSMSNLCQEITLPTEPLQHIDAIDGEIALCILSAINVGKL 468 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 ++L +VR L+ +ID + ++ A+ + R++G+G +G L Sbjct: 469 TR-----LEELEDLCDLSVRSLEELIDYQDYPVKAAELATLGRRSLGVGYIGLAHYLAKH 523 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y S +A + + E ++ + +S +LA+E+G + F + + G+ PID+ Sbjct: 524 GWKYDSQDAWDAVHKLTESFQYYLLKSSNQLAKEKGCCTDFFSTKYSDGILPIDTYKRDV 583 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + ++ + + W+ L+ + G+R+S A P+ + + + + I+P L Sbjct: 584 DEITKVGL----KHDWESLRASIVEHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDYLS 639 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K + G V + + ++ D++ +DG Sbjct: 640 IKKSKKGPLKQVVPSYGHL-----KNNYTLLWDMEGNDG--------------------- 673 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 I+ + QK+ DQA S N +E + + + G KT+YY Sbjct: 674 -----YIKVVAVMQKFFDQAISGNWSYNPTQYPDNEVPISVMAQDLLKTYKYGWKTSYY- 727 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T ++ V + + + + EC+ C Sbjct: 728 ---------QNTYDMKSDDVDDV----EEVKPQLEKLFTELSEEQECDSC 764 >gi|218768315|ref|YP_002342827.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis Z2491] gi|121052323|emb|CAM08653.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis Z2491] gi|319410560|emb|CBY90928.1| ribonucleoside-diphosphate reductase alpha subunit (ribonucleotide reductase) [Neisseria meningitidis WUE 2594] Length = 759 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|205353393|ref|YP_002227194.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273174|emb|CAR38136.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628484|gb|EGE34827.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 761 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTDEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----HDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W +L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWQQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 -DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNEGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|77360361|ref|YP_339936.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas haloplanktis TAC125] gi|76875272|emb|CAI86493.1| ribonucleoside diphosphate reductase 1, alpha subunit [Pseudoalteromonas haloplanktis TAC125] Length = 760 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 195/797 (24%), Positives = 315/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y ++AR + LR++ ++ + + + Sbjct: 64 KAAADQISKESPDYQYLSARLAVFHLRKKAYGQFEPPRL-----------FDHVTKMVGD 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 L + +L L L + RD F Y ++ L +Y + G E Q Sbjct: 113 KRYDAHLLVDYTEQELDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S F TP + T Q SSC L D Sbjct: 173 YILVAASLFADYPRDTRIAYIKRFYDAISLFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+HI G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R ++ L R+ ++ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EF+ Y YE+ E ++I A+ L+ Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP + SNLC EI L + + G I L Sbjct: 409 TGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLDNVNDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LDN++D + + AK + R +G+G++ + L Sbjct: 469 LGAIESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ P D+ + Sbjct: 529 KRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L WD L+ +K GMRNS A+ P+ T + I + I+P ++ V Sbjct: 589 KI----CDEPLHLDWDALRASIKEHGMRNSTVSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYERL-----KDNYELLWDIPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPGKFEGGRVPMKVLLKDLLSAYKLGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ ++ T D Sbjct: 734 TRDGASDAQEDTPDLED 750 >gi|78484808|ref|YP_390733.1| ribonucleotide-diphosphate reductase subunit alpha [Thiomicrospira crunogena XCL-2] gi|78363094|gb|ABB41059.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Thiomicrospira crunogena XCL-2] Length = 760 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 180/792 (22%), Positives = 313/792 (39%), Gaps = 74/792 (9%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 + + +G + +++ ++ A GL++VS V ++ YDG+ SD+ + Sbjct: 4 ETMNVAKRNGETEPLDLEKIHRVITWAAEGLENVSVSEVELRSHIQFYDGMKTSDIHETI 63 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI + P+Y + AR + LR++ E+ + + Sbjct: 64 IKSAADLISESAPDYQHLAARLAIFHLRKKAFDRFTPPTL-----------FEHVNKMVR 112 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 + + + + L N ++++RD F Y ++ L +Y + G E PQ Sbjct: 113 NRLYDPQIQDDYTKAEFDELDNYIQHDRDMNFSYAAVKQLEGKYLVQNRVTGKIYESPQF 172 Query: 320 FFMRVAMGLALKE-------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 +M + M L + FY+ S+F TP + T Q SSC Sbjct: 173 IYMLIPMSLFAHYPNDAEPGKTRLDYVKRFYDAASNFKLSLPTPIMSGVRTPTRQFSSCV 232 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L D L I G+G + +R LG+ I G G+IPF+K Sbjct: 233 LIECGDSLDSINATSSSIVKYVSQRAGIGVNVGQIRALGSEIRGGEAYHTGMIPFIKHFQ 292 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + +QGG R GA + WH++VE + L+ N G + R ++ + L +R Sbjct: 293 TAVKSCSQGGVRGGAATLFFPIWHLEVESLIVLKNNRGVEENRARHLDYGVQVNKLMYQR 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 + + TLFSP +V L+D + +EFE Y+ YE + + + AV L+ ++ Sbjct: 353 MIEGGNITLFSPSDVPGLYDAFFEDQEEFERLYKIYEADDTIRK----KTMKAVDLFTQV 408 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 +TG +I D N S +H SNLC EITL + + G I L Sbjct: 409 AQERAQTGRIYIQNVDHSNTHSSFDPKKAPIHQSNLCLEITLPTHPLNSVDDPEGEIALC 468 Query: 609 A---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 D D+L VR LD+++D + +E A+K++ R +G+G+ Sbjct: 469 TLSAFNLGALEDLDELDELSDLIVRALDSLLDYQDYPVEAARKASMGRRTLGVGVTNLAY 528 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L H+ Y+ A + ++ E I ++ + AS+ L++E G F+ + + QG+ PID+ Sbjct: 529 YLAKNHVKYSDGSANNLVHKAFEAIQYYLLKASLNLSKEYGKCDFFEDTKYAQGILPIDT 588 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + W+ L+ ++ G+RNS A+ P T + I + I+P Sbjct: 589 YKKELDE----FCTEPLHYDWETLRSEIQKHGLRNSTMTALMPCETSSQITNSTNGIEPP 644 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + VK++ G V + ++ + + G + Sbjct: 645 RGYVSVKASKDGILKQVVPGF-----KEFRDQYELLWQIPDNKGYLQ------------- 686 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLK 898 QK++DQA S N D + + A+ GLK Sbjct: 687 -------------LVGIMQKFVDQAISANTNYDPAKFEDGRVPIKLVLQDLLYAYKAGLK 733 Query: 899 TTYYLRSRSATS 910 T YY +R Sbjct: 734 TLYYHNTRDGAD 745 Score = 37.9 bits (86), Expect = 7.9, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQ 69 + + V KRNG D KI R I A EG V+ Sbjct: 2 STETMNVAKRNGETEPLDLEKIHRVIT---WAAEGLENVSVSEVE 43 >gi|322832010|ref|YP_004212037.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp. Y9602] gi|321167211|gb|ADW72910.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp. Y9602] Length = 760 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 202/795 (25%), Positives = 322/795 (40%), Gaps = 69/795 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVIDWAAEGLQNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ M +E Sbjct: 64 KAAADLISKDAPDYQYLAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLVKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE YE YE+ A + K + AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYEKYEQDASIRKQK----VKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I+ AK+ R +G+G++ + L Sbjct: 469 LGAIESLDDLEELAVLAVRALDALLDYQDYPIKAAKRGAMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ P+D+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACQWFNETTYSQGIMPVDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L WD L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----CDEPLHLDWDTLRENIKTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N + K+L A+ G+KT YY Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPSRFPNSKVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGV 919 +R + +K Sbjct: 734 TRDGADDVQEDMKAD 748 >gi|323497714|ref|ZP_08102729.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio sinaloensis DSM 21326] gi|323317190|gb|EGA70186.1| ribonucleotide-diphosphate reductase subunit alpha [Vibrio sinaloensis DSM 21326] Length = 760 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 194/797 (24%), Positives = 320/797 (40%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G + + +++ ++ A GL +VS V + YDG++ +D+ +I Sbjct: 4 QLTVTKRNGRKETIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTTDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ +E LY ++ + I+ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYG----------QYEPPTLY-DHVAKLIDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L + RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHRRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFAKYPQETRLSYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSVKKETVKAIEMFSILMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAIKSLDDFEELSDLVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L WD L++ + T G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCEEALHYDWDGLREEIMTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTK-----YKDNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ +K ++ D Sbjct: 734 TRDGASDDQKDAVQPQD 750 >gi|254670479|emb|CBA06178.1| ribonucleoside-diphosphate reductase alpha chain [Neisseria meningitidis alpha153] Length = 759 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 192/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQ+ S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|326784149|ref|YP_004324542.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] gi|310004881|gb|ADO99272.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] Length = 774 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 208/835 (24%), Positives = 336/835 (40%), Gaps = 93/835 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + + DG++ N +++ +VEEAC GL VS+ V + YDG+S +++ LI Sbjct: 6 TINVEKRDGSIEPLNLEKMHKMVEEACEGLSGVSASQVEMNSGIQFYDGISTDNIQEILI 65 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI PNY V +R L+ LR++V + M Y Sbjct: 66 RSASDLISLDNPNYQYVASRLLMFSLRKQVFN------KSVWQDGMPTPYDVALYNVTVN 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 V L + D D L N + + RD+ F Y GL+ + D+Y + E PQ Sbjct: 120 KVYDEELLDKYSDEDWAKLNNYIDHGRDYLFSYAGLRQVVDKYLVQDRSSNEVFETPQYM 179 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +AM L T++ +YN +S TP + T Q +SC L D Sbjct: 180 YLFIAMTLFADYPATQRLDYVRRYYNAISKHKINIPTPIMAGVRTPLRQFASCVLIDSDD 239 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ + I G GV+PFLK T Sbjct: 240 TLDSIFSSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVAHTGVVPFLKKFESTVRCC 299 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R +N Sbjct: 300 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERFIKNED 359 Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 TLFSP +V L+D +G + F+ Y +YE + I A L+ +L ETG Sbjct: 360 ITLFSPHDVPGLYDDFGTDAFDARYVDYESDQSIPR----KTIGAQELFLSLLKERAETG 415 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610 +I D CN S + V+ SNLC EITL + E A+C L ++N+ Sbjct: 416 RLYIMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLQHIDGDGEIALCILSAVNVGKL 473 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D + AVR L+ +ID + + A+KS R++G+G +G L Sbjct: 474 -----KNLDDMEELCDLAVRGLEELIDYQNYPVNAAEKSTKNRRSLGVGFIGLAHYLARN 528 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y P A ++ + E ++ + +S ELA+E+GA + + + G+ PID+ Sbjct: 529 GEHYDDPGAWKLVHKLAESFQYYLLKSSNELAKEKGACGYYHRTKYSDGILPIDTYKREV 588 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + ++ + WD L+ +K G+R+S A P+ + + + + I+P L Sbjct: 589 DEICQVEL----SHDWDSLRADIKEFGLRHSTLSAQMPSESSSVVSNETNGIEPPRAYLS 644 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K + G V LK + +E Sbjct: 645 IKKSKKGPLKQVVPQFTT--------------------------------LKNNYTLLWE 672 Query: 851 I-DPMWLIESASRRQKWIDQAQSLNL-----YLDEPSG------KKLDFIYRQAWLMGLK 898 + D I S QK+ DQA S N + + L Y+ W K Sbjct: 673 MKDNTGYINVVSVMQKFFDQAISGNWSYNPENYPDNNVPVSVMAGDLLNTYKYGW----K 728 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T+YY ++T N + S L T + C+ C Sbjct: 729 TSYY----------QNTYD-SKTDPNDEAPQEEEKSVEDLLQEILNTQEEACDSC 772 >gi|261340637|ref|ZP_05968495.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|288317050|gb|EFC55988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] Length = 761 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 198/782 (25%), Positives = 321/782 (41%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVKM-VEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDTHLLEDYTEEEFEQMNGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRDTRLEYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ E +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKD----ESIRKQRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPIDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + ++ L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 586 DLDGI-VSEPLHLDWEGLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + + ++ ++ +DG + Sbjct: 645 KASKDGVLRQVVP----DYETLG-NNYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|163803512|ref|ZP_02197382.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. AND4] gi|159172688|gb|EDP57539.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. AND4] Length = 760 Score = 449 bits (1155), Expect = e-123, Method: Composition-based stats. Identities = 190/797 (23%), Positives = 315/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRDGRKETIDLEKIHRVITWAAEGLNNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVARLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L+++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLEHKRDLDFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFANYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGEARSLLVLKNNRGVEENRVRHMDYGVQLNKLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP + L+D + +EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDAPGLYDAFFENQEEFERLYVKYE----NDPSVKKETVKAIEMFTLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLKNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D VR LD ++D + + A KS R +G+G++ F L Sbjct: 469 LGAIKSLDDFEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASV LA+E+G F + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLKASVMLAKEQGKCPLFDETNYAKGLLPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + W L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LICDEKLHYDWGTLRQEIMEHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V D ++ ++ ++G + Sbjct: 645 KASKDGILKQVVPDFAEL-----KNDYELLWNIGSNEGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSGYDSGKVPMKKLLQDLLTAYKFGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A +K ++ D Sbjct: 734 TRDGAKDDQKDAVQPQD 750 >gi|161870165|ref|YP_001599335.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis 053442] gi|161595718|gb|ABX73378.1| ribonucleotide reductase I alpha chain [Neisseria meningitidis 053442] Length = 759 Score = 449 bits (1155), Expect = e-123, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 320/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 AKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGNLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AV----CNEPLHYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQ+ S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|16761203|ref|NP_456820.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141102|ref|NP_804444.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161594|ref|ZP_03347304.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424146|ref|ZP_03357024.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612728|ref|ZP_03370554.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646445|ref|ZP_03376498.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25285839|pir||AC0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503502|emb|CAD07509.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136728|gb|AAO68293.1| ribonucleoside-diphosphate reductase 1 alpha chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 761 Score = 449 bits (1155), Expect = e-123, Method: Composition-based stats. Identities = 192/783 (24%), Positives = 314/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRV--AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|251780295|ref|ZP_04823215.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084610|gb|EES50500.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 741 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 239/790 (30%), Positives = 375/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216 L+ + + A G++D + K + DG+ +D+ +LI S L EPN+ Sbjct: 2 LKKLCDLAIEGIKDNDGMYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDIEPNW 61 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + +L +V K + Y E+ E + + E+ Sbjct: 62 QYAASTIYIYELYDKVRKNRNLDINK----NLYDNYYEFIKELTERNLYGEYILENYSKE 117 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--T 333 D++ L ++K ERDF F Y G++++ RY + N IE+PQ FM +AM LA+ E Sbjct: 118 DVLELEKEIKPERDFLFNYSGIELVAKRYLVQDFNRKVIELPQQMFMGIAMHLAIPEVKE 177 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 ++ A FYN+LS +TPT+ N+ QLSSCF+ TV D L GI+ +L A + Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G +R LG+ I G G S GVIP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL- 510 WH D+ EFL +R N GDDR++ HD+ PDLF K +N W + P E+ + Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNTK 357 Query: 511 ----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 D YG+E+E Y + R I L R ++ ETG P+ F+D Sbjct: 358 GYSLEDFYGEEWEAKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDS 413 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603 N +P +H G+++SSNLCTEI N S+ + VCNL Sbjct: 414 ANKMNPNKHNGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYSVVQNIEAGDFVVCNLS 473 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + D+L + T +R +DNVID+N +++ A+ +N +R IGLG G+ Sbjct: 474 SLVLGNIDVL---NDDELEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRGIGLGTSGY 530 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + + D+ E I++++I AS+ L++E+G Y F+GS WD G Sbjct: 531 HHMLANNKIHWTEEKHRIFVDKVYERINYYSIKASMNLSKEKGKYELFEGSDWDNG---- 586 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + W +LK+ VK+ GMRN +A+AP + A I G S+ ID Sbjct: 587 ----------NYFELRDYNDEKWIDLKESVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P Y++ L +D Sbjct: 637 PIMARFYLEEKKGSIIPKTAPNL-------------------------------SEDNYW 665 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + TA+ ++ W +E RQ+ IDQ QS NLY+ + + +++ +Y +A G+K+ YY Sbjct: 666 YYNTAYNLEQGWCVEMNGVRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725 Query: 903 LRSRSATSVE 912 +RS+S E Sbjct: 726 VRSKSLEVTE 735 >gi|15677158|ref|NP_274311.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria meningitidis MC58] gi|7226531|gb|AAF41667.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis MC58] gi|316984081|gb|EFV63059.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis H44/76] gi|325134465|gb|EGC57110.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M13399] gi|325140482|gb|EGC63003.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis CU385] gi|325205933|gb|ADZ01386.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M04-240196] Length = 759 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YDHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EV L++ + EFE Y YE+ D + R I A L+ ++ Sbjct: 355 ITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQ+ S N D + S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|240016385|ref|ZP_04722925.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA6140] gi|240113128|ref|ZP_04727618.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae MS11] gi|240118182|ref|ZP_04732244.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID1] gi|254493924|ref|ZP_05107095.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae 1291] gi|268599211|ref|ZP_06133378.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae MS11] gi|268603897|ref|ZP_06138064.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID1] gi|226512964|gb|EEH62309.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae 1291] gi|268583342|gb|EEZ48018.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae MS11] gi|268588028|gb|EEZ52704.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID1] Length = 759 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ + + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YNHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKEVRLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|325144566|gb|EGC66865.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria meningitidis M01-240013] Length = 764 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 193/792 (24%), Positives = 322/792 (40%), Gaps = 71/792 (8%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ Sbjct: 2 EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIR 61 Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 D+ +I ++ LI ++ P+Y + AR + LR+ Sbjct: 62 TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311 ++ + + G R + E + L + +ERD +F Y ++ L +Y + Sbjct: 111 DHVKKLTDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170 Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 E PQ ++ VAM L + + FY+ +S+F TP + T Q S Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L D L I G+G + +RGL + I G + G IPF K Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + +QGG R GA + WHI+ E L L+ N G + R ++ I L Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 R+ + TLFSP+EV L++ + EFE Y YE+ D + R I A L+ Sbjct: 351 YTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLF 406 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ++ TG +I D CN SP V VH SNLC EI L + + G I Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEI 466 Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L D+L VR LD ++D + +E A+ S R++G+G++ Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVIN 526 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG P Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + VK++ G V + LK Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670 Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWL 894 + T +++ ++ QK++DQ+ S N D + S K++ A+ Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPGKFEGGKVSMKQMLKDLLTAYK 730 Query: 895 MGLKTTYYLRSR 906 G+KT YY +R Sbjct: 731 YGVKTLYYHNTR 742 >gi|198243793|ref|YP_002216346.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938309|gb|ACH75642.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 780 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 193/791 (24%), Positives = 317/791 (40%), Gaps = 71/791 (8%) Query: 136 KSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 + + + L + DG N ++ +++ A GL +VS V ++ YDG+ Sbjct: 15 QVENHMNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKT 74 Query: 196 SDLETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 SD+ +I ++ LI ++ +Y + AR + LR++ Sbjct: 75 SDIHETIIKAAADLISRDASDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YH 123 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGS 312 + + +E G L E + + + + + ++RD F Y ++ L +Y + G Sbjct: 124 HVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGE 183 Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E Q ++ VA L + FY+ +S+F TP + T Q SS Sbjct: 184 IYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSS 243 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 244 CVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKH 303 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +QGG R GA + WH++VE L L+ N G + R M+ I L Sbjct: 304 FQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMY 363 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 R+ + TLFSP +V L+D + EFE Y YE + +++ AV L+ Sbjct: 364 TRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFS 419 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 M+ TG +I D CN SP V V SNLC EI L + G I Sbjct: 420 LMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIA 479 Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L D+L AVR LD ++D + I AK+ R +G+G++ F Sbjct: 480 LCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINF 539 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PI Sbjct: 540 AYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPI 599 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + +N W++L++ +KT G+RNS A+ P+ T + I + I+ Sbjct: 600 DTYKKDLDAI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIE 655 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + +K++ G V + LK Sbjct: 656 PPRGYVSIKASKDGILRQVVPDY--------------------------------EHLKD 683 Query: 844 IHATAFEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLM 895 + +E+ ++ QK+IDQ+ S N D + ++L A+ Sbjct: 684 AYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKF 743 Query: 896 GLKTTYYLRSR 906 G+KT YY +R Sbjct: 744 GVKTLYYQNTR 754 >gi|161502571|ref|YP_001569683.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863918|gb|ABX20541.1| hypothetical protein SARI_00615 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 761 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 196/783 (25%), Positives = 313/783 (39%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYRHVVKM-VEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLHDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS LA+E+GA F + + +GV PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEQGACPWFNETTYAKGVLPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AIA----NEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|85711600|ref|ZP_01042657.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina baltica OS145] gi|85694460|gb|EAQ32401.1| ribonucleotide-diphosphate reductase alpha subunit [Idiomarina baltica OS145] Length = 777 Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats. Identities = 184/825 (22%), Positives = 316/825 (38%), Gaps = 71/825 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +L + G N ++ ++ A GL +VS+ V +++ YDG+ D+ + Sbjct: 3 EQLFVTKRSGQREPLNLDKIHRVIMWAAEGLNNVSASQVEIKSHIQFYDGIKTEDIHETI 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI +E P+Y + AR + LR+ ++ + ++ Sbjct: 63 IKAAADLISEEAPDYQYMAARLAIFHLRKRAYGKFEPPRL-----------YDHVKKMVD 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 E L E + + + + + RD F Y ++ L ++Y + G E Q Sbjct: 112 EKRYDAHLLEDFSEQEFDQMDEIIDHWRDMNFSYAAVKQLENKYLVQNRVTGDIYESAQF 171 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L ++ + FY+ S+F TP + T Q SSC L Sbjct: 172 LYILVAACLFANYPKSTRMDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIETG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH+++E L L+ N G + R ++ L +R+ ++ Sbjct: 292 CSQGGVRGGAATLFYPLWHLEIENLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLVKDD 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + +EFE Y YE E ++I A+ L+ + Sbjct: 352 FITLFSPSDVPGLYDAFFEDQEEFERLYVQYE----NDENIRKKRIKAIELFSLFMQERA 407 Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG ++ D CN SP V SNLC EI L + G I L Sbjct: 408 STGRIYVQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLSHVNDEEGEIALCTLSAF 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 AVR LD+++D + + A + R +G+G++ F L Sbjct: 468 NLGKIESLSDFEELADLAVRALDSLLDYQEYPVPAAYNATMNRRTLGIGVINFAYYLAKH 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + + E I F+ + AS+ELA+E+G F + + QG+ P D+ Sbjct: 528 GVKYSDGSANGLVHRTFEAIQFYLMKASMELAKEKGKCPKFNETTYSQGILPTDTYKKDL 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + L W++L+K ++ GMRNS A+ P+ T + I + I+P + Sbjct: 588 DAFCSEPL----HLDWEQLRKDIQEHGMRNSTLSALMPSETSSQISNATNGIEPPRGFVS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK++ G V N + ++ + + G + Sbjct: 644 VKASKDGVTKQVVPDYENL-----KNNYELLWQIPDNKGYLQ------------------ 680 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY- 902 QK++DQ S N + K+L A+ MG+KT YY Sbjct: 681 --------LVGIMQKFVDQTISANTNYDPGKFNGAKVPMKQLLQDLLTAYKMGVKTLYYH 732 Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 R +A + + + + + + +C Sbjct: 733 NTRDGAADNQSDISAEQKRQRKQSDRPAEVVIEEDDDCAGGACKI 777 >gi|71892251|ref|YP_277985.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796357|gb|AAZ41108.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 760 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 192/797 (24%), Positives = 322/797 (40%), Gaps = 69/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +G N ++ ++ A GL+ VS V ++ Y+G+ SD++ +I Sbjct: 4 TLLVTKRNGHHEPINLDKIHRVINWAAKGLEQVSVSQVELRSHIQFYNGIKTSDIQETII 63 Query: 204 FSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E+EP+Y + AR + LR++ LY R I+ Sbjct: 64 KAAADLISEEEPDYQYLAARLAVFHLRKKAYGQFEPP----------KLYNHVL-RLIKI 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDQHLLDDYNAEEFNQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ A L + + +FY+ +S+F +TP + T Q SSC L D Sbjct: 173 YILTAACLFSKYPKKTRMHYIQQFYDAISTFKISLATPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSSSIVKYVAQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH+++E L L+ N G D R ++ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLIEGKY 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + EFE Y YE + RKI A+ L+ M+ Sbjct: 353 ITLFSPSDVPGLYEAFFNNQNEFEHLYNIYENDHNIR----HRKIKAIELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN S V SNLC EITL + + G I L Sbjct: 409 TGRIYIQHTDHCNTHSAFDSIAAPVRQSNLCLEITLPTKPLNNINDHNGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N + D L+ VR LD ++D + I A++S R++G+G++ + L Sbjct: 469 LGNIENLDDLSELSILIVRALDALLDYQHYPIPAAQRSAVRRRSLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I +H + AS LAQE+G+ F + + +G+ PID+ Sbjct: 529 VRYSDGSANKLTHRTFEAIQYHLLRASNNLAQEKGSCEWFNDTSYSKGILPIDTYKTDLN 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L+ ++K G+RNS A+ P+ T + I + I+P + + Sbjct: 589 S----FINEPLHYNWEDLRVKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ +G V + D ++ + + G + Sbjct: 645 KTSKNGILRQVVPEFIKLKS-----DYELLWQIPDNRGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N ++ K+L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISTNTNYDPSRFPENKVPMKQLLSDLLYAYRLGIKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDG 921 +R + TL Sbjct: 734 TRDGAQDVQKTLPHNQS 750 >gi|33152745|ref|NP_874098.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus ducreyi 35000HP] gi|33148969|gb|AAP96487.1| ribonucleoside-diphosphate reductase, alpha chain [Haemophilus ducreyi 35000HP] Length = 756 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 188/798 (23%), Positives = 317/798 (39%), Gaps = 71/798 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 +L + +G + +++ ++ A GL +VS V + Y G+ SD+ Sbjct: 2 QSQLMVTKRNGQQEPLDLEKIHRVITWAAEGLANVSVSQVELSAHIQFYQGIRTSDIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI KE P+Y + AR + LR++ T Y E+ + + Sbjct: 62 IIKAAADLISKETPDYQYLAARLAVFHLRKKAYGTFYPPHL-----------FEHIQKLV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 + G LL + + + + L +ERD F Y ++ L +Y + G E Q Sbjct: 111 KLGKYDNLLLKQYSEEEWDIMNGFLVHERDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ VA L + + FY+ S+F TP + T Q SSC L Sbjct: 171 FLYILVAACLFSSYPKATRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSSAVIKYVSQRAGIGINAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++VE + L+ N G + R M+ I L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPIWHLEVESLVVLKNNRGVEDNRCRHMDYGVQINKLIYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + TLFSP +V L++ + ++FE+ Y YE+ + + I A+ L+ ++ Sbjct: 351 SDITLFSPSDVPGLYEAFFADQEKFELLYLQYEQDPSIRK----KSIKAIELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 TG +I D N SP + SNLC EI L + G I L Sbjct: 407 ASTGRIYIHNVDHSNTHSPFDPSVAPIRQSNLCLEIALPTKPLNNINDEQGEIALCTLSA 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+L AVR LD ++D + ++ A+K R++G+G++ + L Sbjct: 467 FNLGTLQNLDELEPLADLAVRALDALLDYQNYPVKAAEKGAIARRSLGIGVINYAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ A ++ + E + ++ + AS+ LA+E G F + + +G+ PIDS Sbjct: 527 HGVRYSDGSANDLTHRTFEAVQYYLLKASMNLAKELGPCKGFNETTYAKGILPIDSYKKD 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + S W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 587 IDQ----LTQEPSHYDWEALRADIKQFGLRNSTLTALMPSETSSQISNATNGIEPPRGYV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K++ G V + LK + + Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------ETLKDQYELLW 670 Query: 850 EIDPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTY 901 +I M + QK++DQA S N D+ K L A+ GLKT Y Sbjct: 671 DIPNMDGYLHLVGIMQKFVDQAISANTNYDPKRFEDDKVPMKILLKDLLTAYKYGLKTLY 730 Query: 902 YLRSRSATSVEKSTLKGV 919 Y +R + L Sbjct: 731 YQNTRDGAEDSQEDLDAN 748 Score = 39.1 bits (89), Expect = 3.8, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 3/62 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 + V KRNG D KI R I A V S +Q T + Sbjct: 3 SQLMVTKRNGQQEPLDLEKIHRVITWAAEGLANVSVSQVELSAHIQFYQGIRTSDIHETI 62 Query: 84 LQ 85 ++ Sbjct: 63 IK 64 >gi|48478313|ref|YP_024019.1| ribonucleotide-diphosphate reductase subunit alpha [Picrophilus torridus DSM 9790] gi|48430961|gb|AAT43826.1| ribonucleoside-diphosphate reductase alpha chain [Picrophilus torridus DSM 9790] Length = 773 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 233/929 (25%), Positives = 377/929 (40%), Gaps = 179/929 (19%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 VIKR+G FD KI+ AI KA ++V+ + LT+ + LL+ S Sbjct: 8 VIKRDGSRVPFDKEKITMAIYKAMLSVKFGSM-------EDASKLTDAVIDELLK---SD 57 Query: 91 LIVHIEDIQDQVECSLMQS-----GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 +E IQD VE LM + + Y++YRE+R +R + + L Sbjct: 58 EEPTVERIQDTVEKVLMTKKINNRDFTAVAKSYIIYREKRKTIREEKELIGVKDDLKLTL 117 Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + V EA +D KI+ ET + M+ + Sbjct: 118 NAIK----------------VLEARYLFKDQDGKII--ETPRQMFHRV------------ 147 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + L E Y Y +Y Y V Sbjct: 148 AVHLAIIEGLYDY-------------------------------RRYQKYNEIYQNGTVY 176 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 L + +L ++LK E + + HIN Sbjct: 177 TSLTRTQI--DELKRAFDELKAEGELTGSFEDFLDFIKTKRNHINE-------------- 220 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 +F +++S+ F+ ++PTL N+G QLS+CF+ V D + IF Sbjct: 221 ------------YIEKFEDVMSNLKFVPNSPTLMNAGGPLGQLSACFVLPVDDSIDSIFD 268 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 AL+ A + K GG G ++ +R + T G + G + F+++ + T + QGGKR+ Sbjct: 269 ALKYTAEIHKSGGGTGFSFSRLRAKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGGKRR 328 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA L H D+ +F+ + + + + N + + D F +++ + L +P Sbjct: 329 GANMGILRYDHPDIMDFI---TSKDSENKVLSNFNISVAVEDEFFEKLDNDDYIELKNPR 385 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 + KV +I A +W ++ ++TG P + F D Sbjct: 386 D---------------------------GKVVNRIKASTIWNTIINQAWKTGDPGMIFLD 418 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 N ++P +++G + S+N C E L CNLGSINL + +FD+D TI Sbjct: 419 EINKKNPVKNIGYIESTNPCGEQPLMPY----ESCNLGSINLSKFVVDGKFDFDAYKETI 474 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 A R LDNV+D N ++K K+ R IGLGLMGF L +L IPY S EA+EI + Sbjct: 475 DIATRFLDNVVDANKFPVDKIKEMTRKTRKIGLGLMGFADMLIMLGIPYNSNEALEIGER 534 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 M+F++ + S LA+ERG + + GS W+ Sbjct: 535 IMKFLNDESHLESQRLAEERGVFPGWYGSDWE---------------------------- 566 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNS 804 K+ +K MRNS IAPT TI+ I G S SI+P + +V+ ++G + +N Sbjct: 567 ----KQNIK---MRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELIEINP 619 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 NEL++R+L+ + ++ + G++ +I+ +PDD+K++ TA EIDP W + + Q Sbjct: 620 LFENELRKRNLYSDDLMEKVART-GNLRDID-LPDDIKRVFVTAQEIDPDWHVLMQATFQ 677 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDG 921 ++ D S + L E + + YR A + K R RS T T + Sbjct: 678 RYCDSGVSKTINLPYEATPDDIARSYRLAKDLHCKGITVYRDRSKTQQVLYAGTDTKKEE 737 Query: 922 KLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 K + + + S T D C Sbjct: 738 KKEKNETIELYTKLPDKYVKLSSTFDPAC 766 >gi|59801041|ref|YP_207753.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA 1090] gi|240013943|ref|ZP_04720856.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae DGI18] gi|240121512|ref|ZP_04734474.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID24-1] gi|240128433|ref|ZP_04741094.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|268686828|ref|ZP_06153690.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|293398905|ref|ZP_06643070.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria gonorrhoeae F62] gi|59717936|gb|AAW89341.1| putative ribonucleotide reductase I alpha chain [Neisseria gonorrhoeae FA 1090] gi|268627112|gb|EEZ59512.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-93-1035] gi|291610319|gb|EFF39429.1| ribonucleoside-diphosphate reductase subunit alpha [Neisseria gonorrhoeae F62] Length = 759 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ + + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YNHVKKLTDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKEARLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|239999149|ref|ZP_04719073.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae 35/02] gi|240080504|ref|ZP_04725047.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA19] gi|240115884|ref|ZP_04729946.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID18] gi|240123730|ref|ZP_04736686.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae PID332] gi|240125921|ref|ZP_04738807.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae SK-92-679] gi|260440301|ref|ZP_05794117.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae DGI2] gi|268594983|ref|ZP_06129150.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae 35/02] gi|268596638|ref|ZP_06130805.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA19] gi|268601558|ref|ZP_06135725.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID18] gi|268682360|ref|ZP_06149222.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID332] gi|268684518|ref|ZP_06151380.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae SK-92-679] gi|291043594|ref|ZP_06569310.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2] gi|268548372|gb|EEZ43790.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae 35/02] gi|268550426|gb|EEZ45445.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae FA19] gi|268585689|gb|EEZ50365.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID18] gi|268622644|gb|EEZ55044.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae PID332] gi|268624802|gb|EEZ57202.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria gonorrhoeae SK-92-679] gi|291012057|gb|EFE04046.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae DGI2] Length = 759 Score = 448 bits (1153), Expect = e-123, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 321/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ D+ +I Sbjct: 6 DLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIRTDDIHETII 65 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR+ + + + Sbjct: 66 KAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------YNHVKKITDA 114 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R + E + L + +ERD +F Y ++ L +Y + E PQ Sbjct: 115 GKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTRQIYETPQFL 174 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VAM L + + FY+ +S+F TP + T Q SSC L D Sbjct: 175 YVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFSSCVLIECDD 234 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +RGL + I G + G IPF K+ + Sbjct: 235 SLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFKMFQAAVKSC 294 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WHI+ E L L+ N G + R ++ I L R+ + Sbjct: 295 SQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLLYTRLIKGGN 354 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ ++ Sbjct: 355 ITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLFSTLMQERAG 410 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V VH SNLC EI L + + G I L Sbjct: 411 TGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEIALCTLSAFN 470 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L VR LD ++D + +E A+ S R++G+G++ + L Sbjct: 471 LGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVINYAYYLAKNG 530 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG PID+ + Sbjct: 531 VRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLPIDTYKKDLD 590 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + V Sbjct: 591 AVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGIEPPRGLVTV 646 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + T +++ Sbjct: 647 KASKDGILKQVVPEF--------------------------------ETLKNAYETLWQL 674 Query: 852 D-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N ++ S K++ A+ G+KT YY Sbjct: 675 PGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYKYGVKTLYYH 734 Query: 904 RSR 906 +R Sbjct: 735 NTR 737 >gi|326784481|ref|YP_004325028.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] gi|310004514|gb|ADO98906.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] Length = 767 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 203/831 (24%), Positives = 334/831 (40%), Gaps = 95/831 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++K++ DG + N +++ +VE AC GL VS V + +DG+ D++ LI Sbjct: 9 EIKVVKRDGEQTTLNLEKVHKMVEHACEGLAGVSESAVEINSGLQFFDGIETKDIQEILI 68 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + PNY V AR LL LR+ V K ++ I++ Sbjct: 69 RSANDLITLENPNYQYVAARLLLFGLRKSVYNGHPDKHPIL---------KDHVENCIKK 119 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + + + L + ++RDF F Y G++ + D+Y G E PQ Sbjct: 120 GVYDGEVLAKFNEEEWEKLNGYIDHDRDFLFTYAGIRQVTDKYLVQDRSTGEIFETPQFM 179 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M +A+ L + + + ++Y+ +S TP + T Q +SC L + D Sbjct: 180 YMMIAVTLFQDDDKFYRLEYIKKYYDAISKHKINIPTPIMAGVRTPIRQFASCVLVDLDD 239 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF G+G + +RG+ + I G + GV+PFLK T Sbjct: 240 TLDSIFSGDMAIGKYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVVPFLKKLESTVRCC 299 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ + L+ N G + R ++ + + +F +R N Sbjct: 300 TQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQLSKIFYERFITNGT 359 Query: 499 WTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 TLFSP +V L+D +G F+ Y YE E ISA L +L ETG Sbjct: 360 ITLFSPHDVPGLYDAFGSDSFDELYTQYE----SDESIPKSTISAQELILDLLKERAETG 415 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610 ++ D CN S + V SNLC EITL + E A+C L +IN+ Sbjct: 416 RIYLMNIDHCNSHSSFKDK--VSMSNLCQEITLPTDPLQHIDGNGEIALCILSAINVGKI 473 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D+L AVR LD +ID + ++ A++S R++G+G +G L Sbjct: 474 NK-----LDELDELCDLAVRGLDALIDYQQYPVKAAEQSTKNRRSLGIGFIGLAHYLAKN 528 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y SPEA ++ + E + +++S L+ E+G F + + G+ PID+ Sbjct: 529 NAKYESPEAYDLVHKLTERFQYALLTSSNRLSMEKGPCGYFGKTKYADGILPIDTYKKDV 588 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + W+ L+ R+ G+RNS A P+ + + + + I+P L Sbjct: 589 DEI----IPNDLSCDWEFLRGRISEYGLRNSTLSAQMPSESSSVVSNATNGIEPPRDYLS 644 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K + G V GS LK + ++ Sbjct: 645 IKKSKKGPLKQVVP----------------------SYGS----------LKNNYTLLWD 672 Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 + D I + QK+ DQA S N +E + + G KT+YY Sbjct: 673 MPDNTGYINVVAIMQKFFDQAISGNWSYNPENYPDNEVPVSVMAKDLLTTYKYGWKTSYY 732 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T + N T + C+ C Sbjct: 733 ----------QNTYDAKKDGDDVDVDNLINELL--------TTEEEVCDSC 765 >gi|238021470|ref|ZP_04601896.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147] gi|237868450|gb|EEP69456.1| hypothetical protein GCWU000324_01370 [Kingella oralis ATCC 51147] Length = 757 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 193/796 (24%), Positives = 313/796 (39%), Gaps = 71/796 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ DG L N ++ +V A GL +VS V +++ Y+G+ D+ +I Sbjct: 5 MQVTKRDGRLEPINLDKIHKVVTWAAEGLDNVSVSQVELKSHIQFYNGIRTDDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +E P+Y + AR + LR+ A +M L G Sbjct: 65 SAADLISEETPDYQYLAARLAIFHLRKIAYGEYAPPHLFAHVQKMVAL-----------G 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L + + + + + +ERD F Y ++ + +Y + E PQ + Sbjct: 114 KYDAHLLQDYTEAEYNEINGYIDHERDLTFSYAAVKQMEGKYLVQNRVTRQIFESPQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VAM L + + FY+ +S F TP + T Q SSC L D Sbjct: 174 ILVAMCLFAKYPKNTRLDYVKRFYDAVSQFKISLPTPIMSGVRTPTRQFSSCVLIECDDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RGLG+ I G + G IPF K+ + + Sbjct: 234 LDSINATTSSIVKYVSQRAGIGINAGRIRGLGSEIRGGEAQHTGCIPFFKMFQAAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+V+ L L+ N G + R ++ I L R+ + Sbjct: 294 QGGVRGGAATLFYPLWHIEVQSLLVLKNNRGVEENRIRQLDYGVQINKLMYTRLIKGGNI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP E L++ + EFE Y YE + ISA L+ ++ T Sbjct: 354 TLFSPHETPGLYEAFFADQDEFERLYTQYENDPSIRK----ETISAADLFSMLMQERAGT 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G ++ D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+ + VR LD ++D + I AKK+ R +G+G++ + L + Sbjct: 470 GALENLDEFENLADLTVRALDALLDYQDYPIPAAKKATMNRRTLGVGVINYSYYLAKNGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A+++ + E + ++ + ASV LA+E GA F + + QG+ PID+ + Sbjct: 530 KYSDGSAIDLTHRTFEAMQYYLLKASVNLAKEYGACPLFNETTYSQGILPIDTYKADLDK 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L+ + G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 ----FCNEPLHYDWEALRADIVKYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVTIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G V LK + T +++ Sbjct: 646 QSKDGILKQVVPEFER--------------------------------LKNQYETLWQMG 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQA S N D ++ A+ G+KT YY Sbjct: 674 GNDGYLKLVGVMQKFIDQAISANTSYDPKRFEGGRVPMNQMLKDLLSAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVD 920 +R +S L+ D Sbjct: 734 TRDGADDRQSDLQDDD 749 >gi|304387411|ref|ZP_07369602.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria meningitidis ATCC 13091] gi|304338504|gb|EFM04623.1| ribonucleotide-diphosphate reductase alpha subunit [Neisseria meningitidis ATCC 13091] Length = 764 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 192/792 (24%), Positives = 320/792 (40%), Gaps = 71/792 (8%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ Sbjct: 2 EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAADGLENVSVSQVELKSHIQFYNGIR 61 Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 D+ +I ++ LI ++ P+Y + AR + LR+ Sbjct: 62 TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311 ++ + + R + E + L + +ERD +F Y ++ L +Y + Sbjct: 111 DHVKKLTDAAKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170 Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 E PQ ++ VAM L + + FY+ +S+F TP + T Q S Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKETRLDYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L D L I G+G + +RGL + I G + G IPF K Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + +QGG R GA + WHI+ E L L+ N G + R ++ I L Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 R+ + TLFSP+EV L++ + EFE Y YE+ D + R I A L+ Sbjct: 351 YTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPDIRK----RIIPAADLF 406 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ++ TG +I D CN SP V VH SNLC EI L + + G I Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPNGEI 466 Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L D+L VR LD ++D + +E A+ S R++G+G++ Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVIN 526 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG P Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRAEIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + VK++ G V + LK Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670 Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWL 894 + T +++ ++ QK++DQ+ S N Y S K++ A+ Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQSISANTAYDPNKFEGSKVSMKQMLKDLLTAYK 730 Query: 895 MGLKTTYYLRSR 906 G+KT YY +R Sbjct: 731 YGVKTLYYHNTR 742 >gi|52425047|ref|YP_088184.1| ribonucleotide-diphosphate reductase subunit alpha [Mannheimia succiniciproducens MBEL55E] gi|52307099|gb|AAU37599.1| NrdA protein [Mannheimia succiniciproducens MBEL55E] Length = 765 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 189/795 (23%), Positives = 315/795 (39%), Gaps = 71/795 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + + ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 13 ALMVTKRDGQVEPLDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 72 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY E+ + + Sbjct: 73 KAAADLISKDAPDYQYLAARLAIFHLRKKAYGHFDPP----------RLY-EHVKKLVRL 121 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + N L + RD F Y ++ L +Y + G E Q Sbjct: 122 GKYDESLLSDFSREEWDEMDNFLDHSRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 181 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 182 YILVAASLFSKYPAETRLDYIHRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 241 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 242 SLDSINATSSAIIKYVSQRAGIGINAGAIRALGSPIRDGEAFHTGCIPFYKHFQTAVKSC 301 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE + L+ N G + R M+ I +R+ + Sbjct: 302 SQGGVRGGAATVYFPMWHLEVESLVVLKNNRGVEENRARHMDYGVQINRTMYQRLIKGGD 361 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 362 ITLFSPSDVPGLYEAFFADQAKFEELYVKYEQDPTIRK----RTVKAVDLFSLLMQERAS 417 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L + G I L Sbjct: 418 TGRIYVQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDEDGEIALCTLSAFN 477 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D D+L + AVR LD ++D + + AK+S+ RA+G+G++ + L Sbjct: 478 LGKIDDLDELENLADLAVRSLDALLDYQDYPVPAAKRSSLGRRALGIGVINYAYYLAKNG 537 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS+ LA+E GA F + + +G+ PID+ + Sbjct: 538 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKELGACEYFNETTYAKGILPIDTYKKDVD 597 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W++L+ + G+RNS A+ P+ T + I + I+P ++ V Sbjct: 598 N----LTSEPLHYDWEQLRTEILEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHISV 653 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++L + +++ Sbjct: 654 KASKDGILKQVVPDY--------------------------------ENLSDKYELLWDM 681 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 M + QK++DQ+ S N D+ K L A+ GLKT YY Sbjct: 682 PNMDGYLHLVGIMQKFVDQSISANTNYDPKRFEDDKVPMKILLKDLLTAYKYGLKTLYYQ 741 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 742 NTRDGADDAQEDLDD 756 >gi|294501622|ref|YP_003565322.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus megaterium QM B1551] gi|294351559|gb|ADE71888.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus megaterium QM B1551] Length = 747 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 237/795 (29%), Positives = 378/795 (47%), Gaps = 93/795 (11%) Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFSSRTLI 210 TL L +E + + + + + + +++ + LI ++ I Sbjct: 4 TLKPTILHELTAYIERLKKEFTQLDFSLYEEKVIQTVTVKENMTDEKVANVLILAALERI 63 Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +EP++ V A L +L R+ E + + + + G+ + L Sbjct: 64 SMEEPDWTYVAADVYLNELYRKAADNRG-----YDKKEKYGSFYQLIQKLTKIGIYNKQL 118 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGL 328 ++ + ++ +A+ + ERD F Y+GL L DRY + E+PQ F+ +AM L Sbjct: 119 LKTYTEEEINEIASVIIPERDRLFTYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTL 178 Query: 329 ALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 +E + E Y LSS + +TPTL N+G + QLSSCF+ T+ D L GI+ + Sbjct: 179 MSQEKKENRTALVKEAYWALSSLYMTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDS 238 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A L+K GG+G +R G+ I G G S G IP++K N+TAV+V+Q G+R+G Sbjct: 239 NTDLATLSKNGGGIGVYLGHIRSRGSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQG 298 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A+ YL+ WH D+ FLD R N GD+R+RTHD+ T +PDLFM++V W LF P E Sbjct: 299 AIAVYLDVWHKDIFSFLDARLNNGDERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHE 358 Query: 507 VSDLHDLYGKEFEIAYENYE---------RQADRGEIKVFRKISAVALWRKMLTMLFETG 557 V L G E Y+ E + E + A+ ++++++ ETG Sbjct: 359 VRTLM---GYSLEDFYDEEEGSGSFRTRYAECVNNEQLSRETVPAIEIFKRIMLSQLETG 415 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETA 598 P++ ++D N + +H G+++ SNLCTEIT N S+ + Sbjct: 416 TPYMFYRDTVNRANQNRHEGIIYCSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFV 475 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL SINL D L I VR+LDNVI++N + +AK +N +RA+GL Sbjct: 476 VCNLSSINLARAVT-----EDVLERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGL 530 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G G+ L L I + + EAV DE E I++ + AS+ LA+E+GAY FKGS ++ Sbjct: 531 GTFGWNHLLALKKIAWETDEAVAYCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFES 590 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + + W EL+ V++ G+RN MA+AP ++ + I G Sbjct: 591 G--------------AYFETRKYTSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGS 636 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + SIDP ++ Y + + V + Sbjct: 637 TASIDPIFRKFYSEEKKNYKIPVTAP-------------------------------DLS 665 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 + + + ID W I+ ++RQ+ IDQ+ S NLY+ ++ K+L ++ AW L Sbjct: 666 PATNWYYKSVYLIDQHWSIKQNAKRQRHIDQSISFNLYVQNDIRAKELLDLHMTAWKEKL 725 Query: 898 KTTYYLRSRSATSVE 912 KTTYY+RS S+ +E Sbjct: 726 KTTYYVRSTSSEVIE 740 >gi|156933157|ref|YP_001437073.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|156531411|gb|ABU76237.1| hypothetical protein ESA_00967 [Cronobacter sakazakii ATCC BAA-894] Length = 761 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 195/783 (24%), Positives = 317/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGSQERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVKM-VEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDHHLLQDYSEDEFAQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTEANRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ E ++I A L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTRYEQD----ESIRKQRIKASELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIESLDELEELSTLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AIASEPL----HYDWESLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EQLKDQYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ +G+KT YY Sbjct: 673 PGNDGYLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKLGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|237747537|ref|ZP_04578017.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter formigenes OXCC13] gi|229378899|gb|EEO28990.1| ribonucleotide-diphosphate reductase subunit alpha [Oxalobacter formigenes OXCC13] Length = 761 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 197/830 (23%), Positives = 312/830 (37%), Gaps = 96/830 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG + ++ +++ A GL +VS V + YDG+ SD+ +I Sbjct: 5 LLVTKRDGRKERIDLDKIHRVIDWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ R + G Sbjct: 65 SAADLISGETPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------YDHVKRLVGMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDSHLLEDYSPAEFAEMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSKYPKQTRLDYIRRFYEAVSTFRVSLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINVTASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA Y WH++VE L L+ N G D R ++ + L KR+ Sbjct: 294 QGGVRGGAATVYYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNRLMYKRLIAGGDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + EFE Y YE + + + AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQDEFERLYSLYEADGSIRK----KTVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + + AK R +G+G++ F L + Sbjct: 470 GAIDSLDELEELATLAVRALDALLDYQDYPVLAAKNGAMGRRTLGIGVINFAYYLAKHGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +GV P+D+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFGETSYAKGVLPVDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ ++ G+RNS A+ P+ T + I + I+P ++ +K Sbjct: 590 ----FCNEPLHYDWEALRENIRQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V ++ DL ++G + Sbjct: 646 ASKDGILRQVVPDYEQLKDAY-----ELLWDLPDNNGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D +L A+ +G+KT YY + Sbjct: 681 ------LVGVMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLMAYKLGVKTLYYQNT 734 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953 R + + S + D CE C Sbjct: 735 R-------------------------DGAEDSQEDLQASKEDDGCESGAC 759 >gi|311278799|ref|YP_003941030.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] gi|308747994|gb|ADO47746.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] Length = 761 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 199/782 (25%), Positives = 313/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISREAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDTSIR----QQRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAISGLDELEDLAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGIMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N WD L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AV----VNEPLHYDWDGLREAIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|229542077|ref|ZP_04431137.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus coagulans 36D1] gi|229326497|gb|EEN92172.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus coagulans 36D1] Length = 744 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 240/782 (30%), Positives = 371/782 (47%), Gaps = 88/782 (11%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLI-EKEPNY 216 + + + ++++ +GL ++ + + K S + LI + I E + Sbjct: 8 SKEMILQLIDQMSAGL-EIETGAYKEKILKLWDQDASLVEKTDLLIKHALENIDEAGAAW 66 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 AR L KL E + P + + + +E+G+ + L + Sbjct: 67 TFFAARIYLHKLYAEAAKNRHYDPTLKY-----GSFYDLIRQLVEKGIYSPKLLDKYTKQ 121 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKE--T 333 ++ L + E+D F Y GL L RY E+PQ +M +AM L E Sbjct: 122 EIETLGRLIDPEKDLLFTYPGLYTLVTRYLASDFEKHVYELPQERWMVIAMYLMQDEQQE 181 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + + E Y LS+ + +TPTL N+G H QLSSCF+ TV D L I+ + + A L Sbjct: 182 TRMEHVKEAYWALSNLYMTVATPTLANAGKTHGQLSSCFIDTVADSLQSIYDSNTDIAQL 241 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+G +RG G+ I G G S GV+P++K N+TAV+V+Q G RKGA+ YL+ Sbjct: 242 SKNGGGIGVYMGKIRGRGSAIKGFPGMSSGVVPWIKQLNNTAVSVDQLGTRKGAITVYLD 301 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 WH D+E+FLDL+ N GDDR R D+ T IPD FM++V + W +F P EV ++ Sbjct: 302 VWHRDIEDFLDLKLNNGDDRLRARDIYTGVCIPDYFMEQVEKRGDWYVFDPHEVKEVMGF 361 Query: 514 YGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++F E + +++ RK+ A+ + ++++ ETG P++ ++D Sbjct: 362 ALEDFYDEEKGKGSWREKYEACIHADLRSKRKVPAIEIMKRIMRSQLETGAPFMFYRDEV 421 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------TAVCNLGSINL 607 N ++P H G+++ SNLCTEI N S E VCNL SINL Sbjct: 422 NRQNPNSHKGIIYCSNLCTEIAQNQSPTELIEEWIKEENVIVKKYRSGDYVVCNLSSINL 481 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + L IR VR+LD+VID+N I++ + +N +RA+GLG G+ L Sbjct: 482 GKAVPDGV-----LERLIRIQVRMLDHVIDVNTLPIKQVQITNKKYRAVGLGTFGWHHLL 536 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 L I + + AVE AD+ E I+++AI +S+ELA+E+G+Y +F GS W G Sbjct: 537 ALEGIEWETEAAVEYADKLYENIAYYAIKSSMELAREKGSYPAFPGSKWSTG-------- 588 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + W L + VK G+RN MA+AP AT + I G + SIDP +Q Sbjct: 589 ------AYFTGKGYTSERWLALAEEVKKYGLRNGYLMAVAPNATTSIIAGSTASIDPVFQ 642 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-A 846 Y++ F V + I+ Sbjct: 643 PYYMEEKKDYRFPVTAP-------------------------------DLDHRTYNIYRR 671 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +A+++D W + + RQK IDQ+ S N Y+ + L ++ QAW GLKTTYY+RS Sbjct: 672 SAYKLDQRWSVRQNAARQKHIDQSISFNFYVPYNIRAQVLLDLHLQAWKSGLKTTYYVRS 731 Query: 906 RS 907 S Sbjct: 732 TS 733 >gi|194098863|ref|YP_002001927.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae NCCP11945] gi|193934153|gb|ACF29977.1| Ribonucleoside-diphosphate reductase, alpha subunit [Neisseria gonorrhoeae NCCP11945] gi|317164438|gb|ADV07979.1| ribonucleotide-diphosphate reductase subunit alpha [Neisseria gonorrhoeae TCDC-NG08107] Length = 764 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 193/792 (24%), Positives = 322/792 (40%), Gaps = 71/792 (8%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ Sbjct: 2 EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVTWAAEGLENVSVSQVELKSHIQFYNGIR 61 Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 D+ +I ++ LI ++ P+Y + AR + LR+ Sbjct: 62 TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311 + + + G R + E + L + +ERD +F Y ++ L +Y + Sbjct: 111 NHVKKITDAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170 Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 E PQ ++ VAM L + + FY+ +S+F TP + T Q S Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L D L I G+G + +RGL + I G + G IPF K Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + +QGG R GA + WHI+ E L L+ N G + R ++ I L Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 R+ + TLFSP+EVS L++ + EFE Y YE+ + + R I A L+ Sbjct: 351 YTRLIKGGNITLFSPNEVSGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLF 406 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ++ TG +I D CN SP V VH SNLC EI L + + G I Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEI 466 Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L D+L VR LD ++D + +E A+ S R++G+G++ Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMDRRSLGIGVIN 526 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG P Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + VK++ G V + LK Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670 Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWL 894 + T +++ ++ QK++DQA S N ++ S K++ A+ Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGNKVSMKQMLKDLLTAYK 730 Query: 895 MGLKTTYYLRSR 906 G+KT YY +R Sbjct: 731 YGVKTLYYHNTR 742 >gi|145629253|ref|ZP_01785052.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 22.1-21] gi|144978756|gb|EDJ88479.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 22.1-21] gi|309750763|gb|ADO80747.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus influenzae R2866] Length = 756 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|297250514|ref|ZP_06864463.2| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria polysaccharea ATCC 43768] gi|296838834|gb|EFH22772.1| ribonucleoside-diphosphate reductase, alpha subunit [Neisseria polysaccharea ATCC 43768] Length = 764 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 193/805 (23%), Positives = 325/805 (40%), Gaps = 71/805 (8%) Query: 135 SKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 + LK+ DG L + + ++ +V A GL++VS V +++ Y+G+ Sbjct: 2 EEEAMNTPTDLKVTKRDGRLEAIDLDKIHRVVAWAAEGLENVSVSQVELKSHIQFYNGIR 61 Query: 195 ESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 D+ +I ++ LI ++ P+Y + AR + LR+ Sbjct: 62 TDDIHETIIKAAADLISEDTPDYQYLAARLAIFHLRKIAYGEYEPPHL-----------Y 110 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHING 311 ++ + G R + E + L + +ERD +F Y ++ L +Y + Sbjct: 111 DHVKKLTYAGKYDRHILEDYSREEFDELNAYIDHERDMSFSYAAVKQLEGKYLVQNRVTR 170 Query: 312 SRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 E PQ ++ VAM L + + FY+ +S+F TP + T Q S Sbjct: 171 QIYETPQFLYVLVAMCLFSKYPKEARLGYVKRFYDAVSTFKVSLPTPIMSGVRTPTRQFS 230 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC L D L I G+G + +RGL + I G + G IPF K Sbjct: 231 SCVLIECDDSLDSINATTSAIVKYVSQRAGIGINAGRIRGLDSEIRGGEARHTGCIPFFK 290 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + +QGG R GA + WHI+ E L L+ N G + R ++ I L Sbjct: 291 MFQAAVKSCSQGGVRGGAATLFYPLWHIEAESLLVLKNNRGVEDNRIRQLDYGVQINRLL 350 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 R+ + TLFSP+EV L++ + EFE Y YE+ + + R I A L+ Sbjct: 351 YTRLIKGGNITLFSPNEVPGLYEAFFADQDEFERLYTKYEQDPNIRK----RIIPAADLF 406 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ++ TG +I D CN SP V VH SNLC EI L + + G I Sbjct: 407 STLMQERAGTGRIYIQNVDHCNTHSPFDPRVAPVHQSNLCMEIALPTKPLDNINDPDGEI 466 Query: 606 NLLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 L D+L VR LD ++D + +E A+ S R++G+G++ Sbjct: 467 ALCTLSAFNLGALNSLDELEGLADLTVRALDALLDYQGYPVEAARTSTMGRRSLGIGVIN 526 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L + Y+ A+ + + E I ++ + AS LA+E GA + F +++ QG P Sbjct: 527 YAYYLAKNGVRYSDGSALGLTHRTFEAIQYYLLKASANLAKEYGACTLFNQTVYSQGKLP 586 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID+ + + W+ L+ + G+RNS A+ P+ T + I + I Sbjct: 587 IDTYKKDLDAVCGEPL----HYDWESLRADIVKYGLRNSTLTALMPSETSSQIANATNGI 642 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + VK++ G V + LK Sbjct: 643 EPPRGLVTVKASKDGILKQVVPEF--------------------------------ETLK 670 Query: 843 KIHATAFEID-PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWL 894 + T +++ ++ QK++DQA S N D + S K++ A+ Sbjct: 671 NAYETLWQLPGNEGYLKLVGVMQKFVDQAISANTAYDPGKFEGGKVSMKQMLKDLLTAYK 730 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGV 919 G+KT YY +R ++ ++ Sbjct: 731 YGVKTLYYHNTRDGADDTQADIQDD 755 >gi|303398730|emb|CBW46711.1| F778R [African swine fever virus Georgia 2007/1] Length = 778 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 214/785 (27%), Positives = 358/785 (45%), Gaps = 74/785 (9%) Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI L +Y+ + AR + +L + ++ KA + ++ Sbjct: 35 QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318 ++ K + + + + Y RD+ LG++ + + Y L +G +E PQ Sbjct: 91 VDVVYKYKAI-----------FDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139 Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +MRVA M + K + Y+LLS ++PT+FN+GT+ PQLSSCFL V Sbjct: 140 DAYMRVAIMIYGMGRVVNMKMILLTYDLLSQHVITHASPTMFNAGTKKPQLSSCFLLNVN 199 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L ++ ++ +++ GG+G + +R + I G+ KS G+ ++ + N + Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLKSNGIQNYIVLQNASQCY 259 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQGG R GA YLE WH D+ FL + + + R ++ W+PDLFM+ + Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319 Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538 W LFSPD+ +LH ++ +EF+ Y Y E + Sbjct: 320 DQIHNRGDGKWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595 +A + ++ + + G+P+I FKD N +S HVG + +SNLC E+T+ Sbjct: 375 VTTAKEIIKEWFKTVVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E VCNL ++NL A N +DY L LDN+ID + E ++SN HR Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G+ G L + + SPEA+ + + + + A+ S+ELA+E+G++ SF GS Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554 Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +G+ D E R + G+RN A+ PT Sbjct: 555 ASKGLLQPDLWVRCGDLVSSWEERVAQTTQGVLTPKRWSQLRLAAMQGLRNGYVTALMPT 614 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 AT +N G ++ +P NLY + +SG+F V+N +L+++LK+ +LW EA+ L G Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGG 674 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IP +++ + T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GL T +YY +K ++ + NA Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771 Query: 949 ECEVC 953 +CE C Sbjct: 772 DCEAC 776 >gi|15896522|ref|NP_349871.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium acetobutylicum ATCC 824] gi|15026353|gb|AAK81211.1|AE007823_5 Ribonucleotide reductase alpha subunit [Clostridium acetobutylicum ATCC 824] gi|325510680|gb|ADZ22316.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium acetobutylicum EA 2018] Length = 743 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 231/787 (29%), Positives = 385/787 (48%), Gaps = 95/787 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMY----DGLSESDLETALIFSSRTLIE-KEPNY 216 +E + +EA G+ D + ++ + +G+ E ++ ++I L + EP + Sbjct: 4 VENLCKEALKGINDDENIYTKTKLINVLKHITREGMKEEEIIKSVIQVCLELTKADEPKW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + +R + L EV + + + + ++ + +EG+ + + E+ Sbjct: 64 LQGASRLYVINLYNEVRKNRNI----SENEDPYKGFYDFIVKLTDEGLYGKYILENYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L + +K +RDF F Y G+++L +RY + +E+PQ FM +AM LA+ E + Sbjct: 120 DIYELESFIKKDRDFLFTYSGIKLLSERYLIQNFERKVLELPQQMFMGIAMHLAVPEKQE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L A + Sbjct: 180 NRVYWAKRFYDVLSSLKATMATPTMSNARKPFYQLSSCFIDTVDDSLKGIYKSLDNFANV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +KY GG+G + VR +GA I G G S GV+P++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKYGGGMGVYFGKVRSMGASIRGFKGASGGVVPWVKLFNDTAIAVDQLGVRNGSVAVWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EF+ LR N GDDR++ HD+ PDLF + ++ W + P E+ Sbjct: 300 AWHKDLPEFMQLRTNNGDDRKKAHDVFPGVCYPDLFWRLAEEDIDANWYMMCPHEIKLVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDYYGEEWEKRYFDCVNDPRIDK----RMMSVKDIVRLIIKSAAETGTPFAFYRDA 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603 N +P +H G+++SSNLCTEI N S+ + VCNL Sbjct: 416 ANRMNPNKHKGMIYSSNLCTEIMQNMSAMDILEDEIIDENGDKIIVQKAKSGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SI L N D ++L I T +R +DNVID+N +++ A+ +N +R IGLG G+ Sbjct: 476 SIVLGNVDVN---DDEELQYVIETQIRAMDNVIDLNYYSVPFAEVTNKRYRGIGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + + S + E D E I+++AI AS+ +A+++G Y F+GS W+ G Sbjct: 533 HHMLTNNRVVWTSDDHFEFTDRVYEKINYYAIQASMNIAKDKGRYEYFEGSDWENGS--- 589 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + W L ++K GMRN MA+AP + A I G S+ +D Sbjct: 590 -----------YFKLRGYNSPKWKALIAKIKKYGMRNGYIMAVAPNGSTATIAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ + L E + W Sbjct: 639 PVMARFWMEEKKGSITPKIAPNLSRE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ID ++ RQ+ IDQ+QS NLY+ + + +++ +Y +A+ G+K+ YY Sbjct: 668 FYNSAYNIDQKLCVKINGIRQRHIDQSQSFNLYITTDYTMRQIMNLYIEAYKSGVKSIYY 727 Query: 903 LRSRSAT 909 +RS+S T Sbjct: 728 VRSKSLT 734 >gi|261253083|ref|ZP_05945656.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio orientalis CIP 102891] gi|260936474|gb|EEX92463.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Vibrio orientalis CIP 102891] Length = 760 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 193/797 (24%), Positives = 319/797 (40%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + +G S + +++ ++ A GL +VS V + YDG++ SD+ +I Sbjct: 4 QLTVTKRNGRKESIDLEKIHRVITWAAEGLDNVSVSQVELRAHIQFYDGITTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI +E P+Y + AR + LR++ ++ R ++ Sbjct: 64 KSAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTL-----------HDHVARMVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G + + E +L L L ++RD F Y ++ L +YF ++G E Q Sbjct: 113 GKYDQHILEDYTKAELDELDAYLDHKRDLNFSYAAVKQLEGKYFVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH + + + L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHGESQALMVLKNNRGVEENRVRHMDYGVQLNRLMYQRLVEGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + A+ ++ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFENQDEFERLYVKYE----NDPSVKKETVKAIEMFSILMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDSEVAPVRQSNLCLEIALPTKPLTNVEDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A KS R +G+G++ + L Sbjct: 469 LGAIKSLDDLEELSELVVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASV LA+E+G SF + + +G+ PID+ + Sbjct: 529 VKYSDGSANGLTHRTFEAIQYYLLRASVALAKEQGKCPSFHETNYAKGLLPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 L + WD L++ + T G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----LVCDEQLHYDWDGLREEIVTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEFTE-----YKDNYELLWNIGSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + KKL A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFESGKVPMKKLLQDLLTAYKYGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ +K ++ D Sbjct: 734 TRDGASDDQKDAVQPQD 750 >gi|187933383|ref|YP_001884519.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium botulinum B str. Eklund 17B] gi|187721536|gb|ACD22757.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium botulinum B str. Eklund 17B] Length = 741 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 240/790 (30%), Positives = 374/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETALIFSSRTLIEK-EPNY 216 L + A G++D + K + DG+ +D+ +LI S L EPN+ Sbjct: 2 LRKLCNLAIEGIKDNDGTYTEEKLLKALEHIIRDGMDINDIRKSLIQVSLDLTSDMEPNW 61 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + +L +V +K + Y E+ E+ + E+ Sbjct: 62 QYSASTVYIYELYDKVRKNRNLDVKK----NLYDNYYEFIKELTEKNFYGEYILENYSKE 117 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE--T 333 D++ L ++K ERDF F Y G+ ++ RY + N S IE+PQ FM +AM LA+ E Sbjct: 118 DILELEKEIKPERDFLFNYSGIDLVTKRYLVQDFNRSVIELPQQMFMGIAMHLAIPEVKE 177 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 ++ A FYN+LS +TPT+ N+ QLSSCF+ TV D L GI+ +L A + Sbjct: 178 KRVYWAKRFYNVLSELKATMATPTMSNARKPFYQLSSCFVDTVDDSLEGIYKSLDNFAKV 237 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G +R LG+ I G G S GVIP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 238 SKFGGGMGIYIGKIRSLGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLD 297 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EFL +R N GDDR++ HD+ PDLF K +N W + P E+ Sbjct: 298 AWHKDIPEFLQIRTNNGDDRKKAHDVFPGVCYPDLFWKLAEENVDNDWYMMCPHEIKNAK 357 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R I L R ++ ETG P+ F+D Sbjct: 358 GYSLEDFYGEEWETKYFECVED----DRIEKRSIKIKDLVRLIIKSAAETGAPFAFFRDN 413 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNLG 603 N +P +H G+++SSNLCTEI N S+ + VCNL Sbjct: 414 ANKMNPNKHKGMIYSSNLCTEIMQNMSAMKVNGDTIIKENDKYNVVQNIEAGDFVVCNLS 473 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + ++L + T +R +DNVID+N +++ A+ +N +R IGLG G+ Sbjct: 474 SLVLGNIDVL---NDEELECVVETQIRAMDNVIDLNYYSVPFAEITNKRYRGIGLGTSGY 530 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + + D+ E I++++I AS+ L++E+G Y F+GS WD G Sbjct: 531 HHMLANNKIHWTEEKHRTFVDKVYEKINYYSIKASMNLSKEKGKYELFEGSDWDNG---- 586 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + W +LK+ VK+ GMRN +A+AP + A I G S+ ID Sbjct: 587 ----------NYFELRDYNDEKWIDLKQEVKSFGMRNGYLIAVAPNGSTATIAGTSEGID 636 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P Y++ L +D Sbjct: 637 PIMARFYLEEKKGSIIPKTAPNL-------------------------------SEDNYW 665 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + TA+ ++ W +E RQ+ IDQ QS NLY+ + + +++ +Y +A G+K+ YY Sbjct: 666 YYNTAYNLEQGWCVEMNGIRQRHIDQGQSFNLYITTQYTMRQIMNLYIKACKCGVKSIYY 725 Query: 903 LRSRSATSVE 912 +RS+S E Sbjct: 726 VRSKSLEVTE 735 >gi|157371508|ref|YP_001479497.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia proteamaculans 568] gi|157323272|gb|ABV42369.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia proteamaculans 568] Length = 762 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 193/806 (23%), Positives = 317/806 (39%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLLAHVTRM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRDTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGQD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQD----DSIRQKRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I+ A + R +G+G++ + L Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIKAAHRGAMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LAQE+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANALTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K +K G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 ----VICQEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V D ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPEYERL-----KNDYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPTRFPGGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + L G + Sbjct: 734 TRDGADDIQEDLLPAKGGDDDCESGA 759 >gi|291618169|ref|YP_003520911.1| NrdA [Pantoea ananatis LMG 20103] gi|291153199|gb|ADD77783.1| NrdA [Pantoea ananatis LMG 20103] gi|327394562|dbj|BAK11984.1| ribonucleoside-diphosphate reductase 1 alpha subunit NrdA [Pantoea ananatis AJ13355] Length = 761 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 199/782 (25%), Positives = 320/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY + ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDQVVKM-VDL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + L + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDRHLLEDYSREEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKMMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDSSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDASIAPVRQSNLCLEIALPTKPLSDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV PID+ + Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++++KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----CNEPLHLDWETLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWDMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGVMQKFIDQAISSNTNYDPSRFPNGKVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|301170417|emb|CBW30023.1| ribonucleoside diphosphate reductase 1, alpha subunit [Haemophilus influenzae 10810] Length = 756 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 187/794 (23%), Positives = 319/794 (40%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRI 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|328784177|ref|XP_001121495.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Apis mellifera] Length = 610 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 190/465 (40%), Positives = 280/465 (60%), Gaps = 18/465 (3%) Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 V EFLDL+KNTG + R ++ A WIPDLFMKRV N WTL P E L D++G EF Sbjct: 102 VFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEF 161 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 EI Y YE E + R+I A LW +L ETG P++ +KD CN +S Q++G Sbjct: 162 EILYTRYEN-----EKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQNIGT 216 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSI--NLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SSNLCTE+ SS +E AVCNL SI N+ + N FD+ KL + LD +I Sbjct: 217 IKSSNLCTEVVQYSSPDEVAVCNLASIAVNMFVNPINQTFDFQKLLKVTKIVTCNLDKII 276 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + I +A+KSN HR IG+G+ G A L+ P+ S EA ++ + E + + A+ Sbjct: 277 DVNYYPIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALE 336 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS ELA+E+G Y +++GS +G+ D ++ T+ W LKK++ Sbjct: 337 ASCELAEEKGTYETYEGSPVSKGILQYDMWNVIP----------TNLWDWTILKKKIAKH 386 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RNS +A PTA+ A I G ++SI+P N+Y + +SG+F VVN L+ +L +RDLW Sbjct: 387 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDLTERDLW 446 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 DE M +++ ++GSI +IERIPDDLK ++ T +EI +++ A+ R +IDQ+QSLN++ Sbjct: 447 DEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSLNVH 506 Query: 877 LDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVD 920 + +P+ +KL ++ W MGLKT YYLR++ A + + T+ Sbjct: 507 MAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAANALQFTVDKSK 551 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 10/152 (6%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLE 199 ++ ++ DG + ++ + + C L + + +Y G++ +L+ Sbjct: 4 KGRMYVIKRDGRKEDVHFDKITSRISKLCYNLDMDYIDPSAITFRVISGLYSGVTTVELD 63 Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVY--------KKPQKATHHEMQCL 251 ++ T+ K P+YA + AR + L +E + K K + + Sbjct: 64 NLAAETAATMTTKHPDYAILAARIAISNLHKETTKSFSVFEFLDLKKNTGKEENRARELF 123 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 Y + + V + M + LA+ Sbjct: 124 YALWIPDLFMKRVLDNDIWTLMCPHESPGLAD 155 >gi|148825801|ref|YP_001290554.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittEE] gi|148715961|gb|ABQ98171.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittEE] gi|309972946|gb|ADO96147.1| Ribonucleoside-diphosphate reductase 1, alpha subunit [Haemophilus influenzae R2846] Length = 756 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|206576450|ref|YP_002237362.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] gi|288934290|ref|YP_003438349.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella variicola At-22] gi|290508493|ref|ZP_06547864.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp. 1_1_55] gi|206565508|gb|ACI07284.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] gi|288889019|gb|ADC57337.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella variicola At-22] gi|289777887|gb|EFD85884.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella sp. 1_1_55] Length = 761 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 201/782 (25%), Positives = 319/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E+ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + ++ + W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 586 DLDGI-VSESLHFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|295706970|ref|YP_003600045.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus megaterium DSM 319] gi|294804629|gb|ADF41695.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus megaterium DSM 319] Length = 747 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 237/795 (29%), Positives = 379/795 (47%), Gaps = 93/795 (11%) Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY--DGLSESDLETALIFSSRTLI 210 TL L +E + + + + + + +++ + LI ++ I Sbjct: 4 TLKPTILHELTAYIERLKKEFTQLDFSLYEEKVIQTVTVKENMTDEKVANVLILAALERI 63 Query: 211 E-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 +EP++ V A L +L R+ + E + + + G+ + L Sbjct: 64 SMEEPDWTYVAADVYLNELYRKA-----GDNRGYDKKEKYGSFYQLIQELTKIGIYNKQL 118 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGL 328 ++ + ++ +A+ + ERD F Y+GL L DRY + E+PQ F+ +AM L Sbjct: 119 LKTYTEEEINEIASVIIPERDRLFTYIGLLTLADRYLATSHDKRVYELPQERFLIIAMTL 178 Query: 329 ALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 +E + + E Y LSS + +TPTL N+G + QLSSCF+ T+ D L GI+ + Sbjct: 179 MSQEKKESRTALVKEAYWALSSLYMTVATPTLSNAGKSYGQLSSCFIDTIDDSLRGIYDS 238 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + A L+K GG+G +R G+ I G G S G IP++K N+TAV+V+Q G+R+G Sbjct: 239 NTDLATLSKNGGGIGVYLGHIRSRGSDIKGFKGVSSGTIPWMKQLNNTAVSVDQLGQRQG 298 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A+ YL+ WH D+ FLD R N GD+R+RTHD+ T +PDLFM++V W LF P E Sbjct: 299 AIAVYLDVWHKDIFSFLDARLNNGDERQRTHDLFTGVCLPDLFMEKVEAREDWHLFDPHE 358 Query: 507 VSDLHDLYGKEFEIAYENYE---------RQADRGEIKVFRKISAVALWRKMLTMLFETG 557 V L G E Y+ E + E + A+ ++++++ ETG Sbjct: 359 VRTLM---GYSLEDFYDEEEGSGSFRTRYAECVNNEQLSRETVPAIEIFKRIMLSQLETG 415 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETA 598 P++ ++D N + +H G+++ SNLCTEIT N S+ + Sbjct: 416 TPYMFYRDTVNRANQNRHEGMIYCSNLCTEITQNQSTTVVTEEITEDGKIIITKNPGDFV 475 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNL SINL D L I VR+LDNVI++N + +AK +N +RA+GL Sbjct: 476 VCNLSSINLARAVT-----EDVLERLIPIQVRMLDNVIELNDLPVLQAKLTNQKYRAVGL 530 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G G+ L L I + + EAV DE E I++ + AS+ LA+E+GAY FKGS ++ Sbjct: 531 GTFGWNHLLALKKIAWETDEAVAYCDELYEQIAYLTVQASMNLAKEKGAYPLFKGSDFES 590 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G + + W EL+ V++ G+RN MA+AP ++ + I G Sbjct: 591 G--------------AYFETRKYTSEAWSELRNEVQSNGIRNGYLMAVAPNSSTSIIAGS 636 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 + SIDP ++ Y + + V + Sbjct: 637 TASIDPIFRKFYSEEKKNYKIPVTAP-------------------------------DLS 665 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 + + + ID W I+ ++RQ+ IDQ+ S NLY+ ++ K+L ++ AW L Sbjct: 666 PATNWYYKSVYLIDQHWSIKQNAKRQRHIDQSISFNLYVQNDIRAKELLDLHMAAWKEKL 725 Query: 898 KTTYYLRSRSATSVE 912 KTTYY+RS S+ +E Sbjct: 726 KTTYYVRSTSSEVIE 740 >gi|145631491|ref|ZP_01787260.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae R3021] gi|144982921|gb|EDJ90434.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae R3021] Length = 756 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 189/794 (23%), Positives = 320/794 (40%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDAQEDLDD 747 >gi|320175006|gb|EFW50121.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella dysenteriae CDC 74-1112] Length = 761 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ ++ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLIMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|9628153|ref|NP_042739.1| ribonucleotide reductase large subunit [African swine fever virus] gi|1172937|sp|P42491|RIR1_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|780415|gb|AAA65275.1| ribonucleotide reductase large subunit [African swine fever virus] gi|162849428|emb|CAN10393.1| Ribonucleotide reductase large subunit [African swine fever virus OURT 88/3] gi|291289489|emb|CBH29146.1| BA71V-F778R [African swine fever virus E75] gi|1097434|prf||2113434AU ribonucleotide reductase:SUBUNIT=large Length = 778 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 214/785 (27%), Positives = 359/785 (45%), Gaps = 74/785 (9%) Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI L +Y+ + AR + +L + ++ KA + ++ Sbjct: 35 QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318 ++ K + + + + Y RD+ LG++ + + Y L +G +E PQ Sbjct: 91 VDVVYKYKAI-----------FDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139 Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +MRVA M + + K + Y+LLS ++PT+FN+GT+ PQLSSCFL V Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVN 199 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L ++ ++ +++ GG+G + +R + I G+ +S G+ ++ + N + Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQGG R GA YLE WH D+ FL + + + R ++ W+PDLFM+ + Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319 Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538 W LFSPD+ +LH ++ +EF+ Y Y E + Sbjct: 320 DQIHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595 +A + ++ + + G+P+I FKD N +S HVG + +SNLC E+T+ Sbjct: 375 VTTAKEIIKEWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E VCNL ++NL A N +DY L LDN+ID + E ++SN HR Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G+ G L + + SPEA+ + + + + A+ S+ELA+E+G++ SF GS Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554 Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +G+ D E R + G+RN A+ PT Sbjct: 555 ASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLRLAAMQGVRNGYLTALMPT 614 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 AT +N G ++ +P NLY + +SG+F V+N +L+++LK+ DLW EA+ L G Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGG 674 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IP +++ + T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GL T +YY +K ++ + NA Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771 Query: 949 ECEVC 953 +CE C Sbjct: 772 DCEAC 776 >gi|238895769|ref|YP_002920505.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|330000611|ref|ZP_08303754.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] gi|238548087|dbj|BAH64438.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537953|gb|EGF64132.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] Length = 761 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 201/782 (25%), Positives = 318/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E+ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDTIRK----QRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + ++ W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 586 DLDGI-VSEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|261346129|ref|ZP_05973773.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] gi|282565782|gb|EFB71317.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] Length = 763 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 194/802 (24%), Positives = 316/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL +VS +V + YDG+ SD+ +I Sbjct: 4 SLLVTKRDGHKERIDLDKIHKVIAWAAEGLNNVSVSLVELRSQIQFYDGIRTSDIHETMI 63 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI P+Y + AR + LR++ + R +E Sbjct: 64 KAAADLITGDTPDYQYLAARLAIFNLRKKAYGQFEPPKLYT-----------HVKRLVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + D + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSHYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + + AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDENIRKS----SVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I A+K + R +G+G++ + L Sbjct: 469 LGAINSLDELEELAVLAVRALDALLDYQDYPIPAAQKGSMGRRTLGVGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKRELD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++ G+RNS A+ P+ T + I + I+P + + Sbjct: 589 K----LTDEPLHYDWETLRKEIQQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ + ++G + Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNNGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMNQLLKDLLLAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755 >gi|152971180|ref|YP_001336289.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956029|gb|ABR78059.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 761 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 201/782 (25%), Positives = 318/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E+ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + ++ W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 586 DLDGI-VSEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|119472402|ref|ZP_01614520.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales bacterium TW-7] gi|119444924|gb|EAW26222.1| ribonucleotide-diphosphate reductase alpha subunit [Alteromonadales bacterium TW-7] Length = 760 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 193/797 (24%), Positives = 313/797 (39%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ ++ + + + Sbjct: 64 KAAADQISKESPDYQYLAARLAVFHLRKKAYGQFEPPRL-----------FDHVTKMVSD 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 L + + L L + RD F Y ++ L +Y + G E Q Sbjct: 113 KRYDAHLLADYTEQEFDELDEYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S F TP + T Q SSC L D Sbjct: 173 YILVAASLFADYPRETRVSYIKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+HI G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R ++ L R+ ++ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EF+ Y YE+ E ++I A+ L+ Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFDTLYVKYEQD----ESIRKKRIKAIELFSVFAQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYLQNVDHCNTHSPFIAKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LDN++D + + AK + R +G+G++ + L Sbjct: 469 LGALESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ P D+ + Sbjct: 529 KRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKTDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L WD L+K ++ GMRNS A+ P+ T + I + I+P ++ V Sbjct: 589 KI----CDEPLHLDWDALRKSIQEHGMRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYERL-----KDNYELLWDIPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQ S N D + K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQTISANTNYDPNKFEGGKVPMKVLLKDLLSAYKLGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ + T + D Sbjct: 734 TRDGASDAQDDTPEVED 750 >gi|300926339|ref|ZP_07142139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|301328724|ref|ZP_07221777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] gi|300417616|gb|EFK00927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|300844872|gb|EFK72632.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] Length = 761 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 316/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L + Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ +G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKLGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|145634464|ref|ZP_01790174.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittAA] gi|229846891|ref|ZP_04466998.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 7P49H1] gi|145268444|gb|EDK08438.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittAA] gi|229810380|gb|EEP46099.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 7P49H1] Length = 756 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|326571162|gb|EGE21186.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis BC7] Length = 758 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 188/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ + Sbjct: 5 DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI E P+Y + AR + LR+ A + E Sbjct: 65 IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 +G + + + L + + + RD Y ++ + +Y + E PQ Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +M V M L + ++ FY+ S+F+ TP + T Q SSC L Sbjct: 174 LYMLVGMCLFARYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I G+G + +R LG+ I G + G IPF K+ + Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + + FE Y YE + + RK+ A L+ ML Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L ++ + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +KL+ VR LD ++D + + AKK + R +G+G++ + L Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PID+ Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + Q ++ ++ ++G Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + QK+IDQ+ S N D + K L A+ G+KT YY Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 735 NTRDGADDAQGDLDD 749 >gi|162849255|emb|CAN10144.1| Ribonucleotide reductase large subunit [African swine fever virus Benin 97/1] Length = 778 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 213/785 (27%), Positives = 358/785 (45%), Gaps = 74/785 (9%) Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI L +Y+ + AR + +L + ++ KA + ++ Sbjct: 35 QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318 ++ K + + + + Y RD+ LG++ + + Y L +G +E PQ Sbjct: 91 VDVVYKYKAI-----------FDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139 Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +MRVA M + + K + Y+LLS ++PT+FN+GT+ PQLSSCFL V Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVN 199 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L ++ ++ +++ GG+G + +R + I G+ +S G+ ++ + N + Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQGG R GA YLE WH D+ FL + + + R ++ W+PDLFM+ + Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319 Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538 W LFSPD+ +LH ++ +EF+ Y Y E + Sbjct: 320 DQIHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595 +A + ++ + + G+P+I FKD N +S HVG + +SNLC E+ + Sbjct: 375 VTTAKEIIKEWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVIIPCWEGDKA 434 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E VCNL ++NL A N +DY L LDN+ID + E ++SN HR Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G+ G L + + SPEA+ + + + + A+ S+ELA+E+G++ SF GS Sbjct: 495 IGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554 Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +G+ D E R + G+RN A+ PT Sbjct: 555 ASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLRLAAMQGVRNGYLTALMPT 614 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 AT +N G ++ +P NLY + +SG+F V+N +L+++LK+ DLW EA+ L G Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGG 674 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IP +++ + T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GL T +YY +K ++ + NA Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771 Query: 949 ECEVC 953 +CE C Sbjct: 772 DCEAC 776 >gi|229845067|ref|ZP_04465203.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 6P18H1] gi|229812039|gb|EEP47732.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 6P18H1] Length = 756 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 316/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|68250261|ref|YP_249373.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 86-028NP] gi|68058460|gb|AAX88713.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae 86-028NP] Length = 756 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|146312443|ref|YP_001177517.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter sp. 638] gi|145319319|gb|ABP61466.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Enterobacter sp. 638] Length = 761 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 197/782 (25%), Positives = 314/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ +M L Sbjct: 64 KAAADLISREAPDYQYMAARLAIFHLRKKAYGQFEPPALLDHVTKMVEL----------- 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDAHLLEDYTEEEFKQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLEYVKRFYDAVSIFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGQD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLYDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKSLAELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHQTFEAIQYYLMKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----VNEPLHLDWETLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK ++ ++ +DG + Sbjct: 645 KASKDGVLRQVVPDY-ELLKD----SYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|319776093|ref|YP_004138581.1| ribonucleoside-diphosphate reductase subunit alpha [Haemophilus influenzae F3047] gi|317450684|emb|CBY86904.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae F3047] Length = 756 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 188/794 (23%), Positives = 319/794 (40%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ LY ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPP----------RLY-DHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASGIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|304398197|ref|ZP_07380071.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] gi|304354063|gb|EFM18436.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] Length = 761 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 196/783 (25%), Positives = 316/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY + ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDQVVKM-VDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + L + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH+++E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDQSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ + L Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGIMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----SNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + +E+ Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDQYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQA S N D + K+L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGLMQKFIDQAISSNTNYDPSRFTNGKVPMKQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|319896902|ref|YP_004135097.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae F3031] gi|317432406|emb|CBY80761.1| ribonucleoside-diphosphate reductase alpha chain [Haemophilus influenzae F3031] Length = 756 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKQLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 A----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|315126540|ref|YP_004068543.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas sp. SM9913] gi|315015055|gb|ADT68393.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas sp. SM9913] Length = 760 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 193/790 (24%), Positives = 305/790 (38%), Gaps = 69/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ ++ +E+ Sbjct: 64 KAAADQISKESPDYQYLAARLAVFHLRKKAYGQFEPPRL-----------FDHVTNMVEQ 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 L + +L L L + RD F Y ++ L +Y + G E Q Sbjct: 113 KRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S F TP + T Q SSC L D Sbjct: 173 YILVAASLFSDYPRDTRIDYIKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R ++ L R+ ++ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EF+ Y YE+ E ++I A+ L+ Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLSNVNDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LDN++D + + AK + R +G+G++ + L Sbjct: 469 LGAIESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + + E I ++ + AS ELA+ERGA F + + QG+ P D+ + Sbjct: 529 KRYSDGSANALTHRTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L WD L+ +K GMRNS A+ P+ T + I + I+P ++ V Sbjct: 589 KI----CDEPLHLDWDALRASIKEHGMRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYERL-----KDSYELLWDIPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ S N D K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQTISANTNYDPNKYEGGRVPMKVLLKDLLGAYKLGVKTLYYHN 733 Query: 905 SRSATSVEKS 914 +R S + Sbjct: 734 TRDGASDAQE 743 >gi|329123257|ref|ZP_08251825.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus aegyptius ATCC 11116] gi|327471466|gb|EGF16914.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus aegyptius ATCC 11116] Length = 756 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|308187585|ref|YP_003931716.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] gi|308058095|gb|ADO10267.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] Length = 761 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 196/783 (25%), Positives = 316/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRQERIDLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY + ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDQVVKM-VDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + L + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDRHLLEDYSQEEFAQMDEFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRDTRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH+++E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEIESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQD----KSIRQQRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPRIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ + L Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----SNEPLHLDWESLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + +E+ Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDQYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQA S N D + K+L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGLMQKFIDQAISSNTNYDPSRFANGKVPMKQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|187731504|ref|YP_001881064.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii CDC 3083-94] gi|187428496|gb|ACD07770.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii CDC 3083-94] Length = 761 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|117920414|ref|YP_869606.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. ANA-3] gi|117612746|gb|ABK48200.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. ANA-3] Length = 762 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 188/805 (23%), Positives = 331/805 (41%), Gaps = 69/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + + ++ ++ A GL++VS V T+ +DG+ + +I Sbjct: 5 MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ + +E G Sbjct: 65 SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + +L + + + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDMHILQDYTREELDIMDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + + +FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EFE Y YE+ + + + + AV L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP + SNLC EI L + G I L A N Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + +L AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGM 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I F+ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYKRDLDK 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W+ L++ +K G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 ICSEPL----HLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V +ELK ++ ++ + ++G + Sbjct: 646 ASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + + L A+ +G+KT YY + Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930 R S + + ++ + + Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759 >gi|215275536|sp|P0C8H8|RIR1_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit Length = 778 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 213/785 (27%), Positives = 361/785 (45%), Gaps = 74/785 (9%) Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI L +Y+ + AR + +L + ++ KA + ++ Sbjct: 35 QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318 ++ K + + + + Y RD+ LG++ + + Y L +G +E PQ Sbjct: 91 VDVVYKYKAI-----------FDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139 Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +MRVA M + + K + Y+LLS ++PT+FN+GT+ PQLSSCFL V Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNVN 199 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L ++ ++ +++ GG+G + +R + I G+ +S G+ ++ + N + Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQGG R GA YLE WH D+ FL++ + + R ++ W+PDLFM+ + Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319 Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538 W LFSPD+ +LH ++ +EF+ Y Y E + Sbjct: 320 DQIHNRGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595 +A + + + + G+P+I FKD N +S HVG + +SNLC E+T+ Sbjct: 375 VTTAKEIIKAWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E VCNL ++NL A N +DY L LDN+ID + E ++SN HR Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G+ G L I + SPEA+ + + + + A+ S+ELA+E+G++ SF GS Sbjct: 495 IGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT------IGMRNSNCMAIAPT 769 +G+ D ++ +K + G+RN A+ PT Sbjct: 555 ASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLRLAAIQGVRNGYLTALMPT 614 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 AT +N G ++ +P NLY + +SG+F V+N +L+++LK+ +LW EA+ L G Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGG 674 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IP +++ + T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GL T +YY +K ++ + NA Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771 Query: 949 ECEVC 953 +CE C Sbjct: 772 DCEAC 776 >gi|270262778|ref|ZP_06191049.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] gi|270043462|gb|EFA16555.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] Length = 762 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 192/806 (23%), Positives = 318/806 (39%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLLAHVTRM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYNSEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFANQDEFERLYTLYEKD----DSIRQKRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I+ A + R +G+G++ + L Sbjct: 469 LGAIESLDDLEELATLAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LAQE+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANSLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + W+ L+K +K G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 ----VICDEPLHYDWETLRKEIKETGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKNEY-----ELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPSRFPAGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + L G + Sbjct: 734 TRDGADDVQEDLLPAKGGDDDCESGA 759 >gi|109898788|ref|YP_662043.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudoalteromonas atlantica T6c] gi|109701069|gb|ABG40989.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Pseudoalteromonas atlantica T6c] Length = 771 Score = 446 bits (1146), Expect = e-122, Method: Composition-based stats. Identities = 196/811 (24%), Positives = 316/811 (38%), Gaps = 71/811 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 KL + G S + +++ ++ A GL +VS V + + YDG+ D+ L Sbjct: 3 NKLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI + P+Y + AR + LR++ A M +E Sbjct: 63 IRSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPALFAHVTNM-----------VE 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 + L + + + + + + RD F Y ++ L +Y + G E Q Sbjct: 112 MQKYDQHLLSDYSEAEFQEMDDYIDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L + + + FY+ S F TP + T Q SSC L Sbjct: 172 LYILVAACLFADYPKDSRMEYIKRFYDATSKFKISLPTPIMAGVRTPTRQFSSCVLIEAG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ ++ Sbjct: 292 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKDQ 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + +FE Y YE+ + +I AV L+ + Sbjct: 352 HISLFSPSDVPGLYDAFFADQPKFEELYVKYEQDDSIRKT----QIKAVELFSLFMQERA 407 Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG ++ D CN SP + SNLC EI L + E G I L Sbjct: 408 STGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLSAF 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + A AVR LDN++D + + A + R +G+G++ F L Sbjct: 468 NLGAIESLEDFAEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINFAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + + E + +H + AS LA+E+GA F + + QG+ PID+ Sbjct: 528 GVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPIDTYKKDL 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + N WD L+ +K G+RNS A+ P+ T + I + I+P ++ Sbjct: 588 DKI----CNEPLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHIS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKS+ G V LK + ++ DL +DG + Sbjct: 644 VKSSKDGVLKQVVPEY-ELLKDK----YELLWDLPSNDGYLQ------------------ 680 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY- 902 QK++DQ S N D + K L A+ +G+KT YY Sbjct: 681 --------LTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLLTAYQLGVKTLYYH 732 Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 R +A + ++ AV D + Sbjct: 733 NTRDGAADTSQQELKSTQFVPQEAVVEEDDD 763 >gi|209695248|ref|YP_002263177.1| ribonucleotide-diphosphate reductase subunit alpha [Aliivibrio salmonicida LFI1238] gi|208009200|emb|CAQ79454.1| ribonucleoside-diphosphate reductase 1 alpha chain [Aliivibrio salmonicida LFI1238] Length = 758 Score = 446 bits (1146), Expect = e-122, Method: Composition-based stats. Identities = 196/790 (24%), Positives = 319/790 (40%), Gaps = 69/790 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 P+L + +GT N +++ ++ A L +VS V +++ Y+G+ SD+ + Sbjct: 3 PQLTVTKRNGTTEKINLEKIHKVITWAAENLDNVSVSQVEMKSHIQFYEGMKTSDIHETI 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI +E P+Y + AR + LR++ ++ IE Sbjct: 63 IKAAADLISEETPDYQYLAARLSVFHLRKKAYGQFEPPTL-----------FKHVNNLIE 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQA 319 G + + E + + + + + RD F Y ++ L +YF + G+ E Q Sbjct: 112 LGKYDKHITEDYTEAEFDLMDQMIDHSRDMDFSYAAVKQLEGKYFVQNRVTGAIYESAQF 171 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L + + FY+ S F TP + T Q SSC L Sbjct: 172 LYILVAACLFAKYPKDTRLDYIQRFYDATSKFKISLPTPIMSGVRTPTRQFSSCVLIECD 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G IPF K Sbjct: 232 DSLDSINATAGSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKC 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 292 CSQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGE 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V +++ + EFE Y YE+ I A+ L+ ++ Sbjct: 352 HISLFSPSDVPGMYEAFFADQVEFERLYLKYEQDTSI----KRETIKAIELFSLLMQERA 407 Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP + SNLC EI L + G I L A Sbjct: 408 STGRIYIQNVDHCNTHSPFDPSVAPIRQSNLCLEIALPTKPLTHVNDEEGEIALCTLSAF 467 Query: 614 NQFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +K L AVR LD ++D + + A KS R +G+G++ + L Sbjct: 468 NLGAIEKLEELEELAELAVRALDALLDYQDYPLPAAYKSTMNRRTLGVGVINYAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + ++ E I F+ + ASV LA+E+GA +F + + QG+ PIDS Sbjct: 528 GVKYSDGSANGLTHKTFEAIQFYLLKASVNLAKEQGACPAFNETTYAQGILPIDSYKKDI 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + L W+EL+ +KT G+RNS A+ P+ T + I + I+P + Sbjct: 588 DNICSEEL----HLDWEELRSDIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V +N + ++ ++ +DG + Sbjct: 644 IKASKDGILKQVVPDYLNL-----KDNYELLWNIGSNDGYLQ------------------ 680 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 QK++DQA S N D + K L A+ +GLKT YY Sbjct: 681 --------LVGIMQKFVDQAISANTNYDPNSQPNGKVPMKLLLKDLLTAYKLGLKTLYYH 732 Query: 904 RSRSATSVEK 913 +R S + Sbjct: 733 NTRDGASDSQ 742 >gi|88801049|ref|ZP_01116597.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp. MED297] gi|88776188|gb|EAR07415.1| ribonucleotide-diphosphate reductase alpha subunit [Reinekea sp. MED297] Length = 757 Score = 446 bits (1146), Expect = e-122, Method: Composition-based stats. Identities = 202/803 (25%), Positives = 319/803 (39%), Gaps = 84/803 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L+I DG L +++ +++ A GL+ VS V + YDG+S +++ L+ Sbjct: 3 LQIKKRDGRLEPIQLEKIHRVLQWASEGLKKVSVSEVELKARIQFYDGMSTTEIHEMLVR 62 Query: 205 SSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI +P+Y + AR + LR++ + R + E Sbjct: 63 SAADLISDRQPDYQFMAARLAIFHLRKQAFGRFEPPHV-----------YDLVTRLVNER 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 +L + + D L L + RD F Y G++ L +Y + G E PQ + Sbjct: 112 RYDPILLSAYSEADWDELNGCLDHSRDLDFAYAGVKQLQGKYLVQDRVTGRIFESPQFVY 171 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + + L + +FY S+ F TP + T Q SSC L D Sbjct: 172 LLIGACLFSGYPAETRLTYVKKFYQAASTHRFSLPTPIMAGVRTPTRQFSSCVLIECDDT 231 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +RG+G+ I G IPF K+ + + Sbjct: 232 LDSINATSSSVVNYVSQRAGIGINAGRIRGIGSPIRSGEAFHTGCIPFYKLFQSAVKSCS 291 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WHI+ EE L L+ N G D R ++ + L +R+ Q++ Sbjct: 292 QGGIRGGAATVFYPLWHIEAEELLVLKNNRGVDENRCRHLDYGVQLNRLMYQRLIQDSHI 351 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP EV L+D + FE Y+ YE RK++A L+ ++ T Sbjct: 352 SLFSPSEVPGLYDAFFEDQARFETLYKQYEEDTSIRR----RKVNARDLFALLMQERAST 407 Query: 557 GHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN P + SNLC EI L + E A+C L ++NL Sbjct: 408 GRIYIQNVDHCNEHGPFDPAKAPIRQSNLCMEIALPTKPLQSLDDEQGEIALCTLAAVNL 467 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + + D T VR LD ++D + ++ A+ S H R +G+G++ + L Sbjct: 468 GVLDSLDDIDE-----TAELLVRALDALLDYQHYPVKAAELSTHKRRPLGVGVINYAYYL 522 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y A + + E + F +SAS LA+E+GA S F + +G PID Sbjct: 523 AKHGYRYDDEGAKGLTHRTFERLQFALLSASNRLAREQGACSGFAETKLAKGSMPIDRYK 582 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + W L++ + G+RNS A+ P+ T A I + I+P Sbjct: 583 ADLDAV----CQEPLLCDWAALRESILEHGVRNSTLSALMPSETSAQIANATNGIEPPRA 638 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRD-LWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + +K++ G V + Q D LWD+ Sbjct: 639 LVSIKASKDGVLKQVVPEIERLADQYDLLWDQQ--------------------------- 671 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDE------PSGKKLDFIYRQAWLMGLKT 899 + A+ QK++DQA S N Y E + L A+ +GLKT Sbjct: 672 -----SNAGYLALAAIMQKFVDQAISSNTSYQPERYPDRKVPMQTLLGDLLTAYKLGLKT 726 Query: 900 TYY--LRSRSATS-VEKSTLKGV 919 YY R SA + +K T+ Sbjct: 727 LYYHNTRDGSAANHNQKETIAES 749 >gi|317130867|ref|YP_004097149.1| ribonucleoside-diphosphate reductase, subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315475815|gb|ADU32418.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cellulosilyticus DSM 2522] Length = 726 Score = 446 bits (1146), Expect = e-122, Method: Composition-based stats. Identities = 237/740 (32%), Positives = 354/740 (47%), Gaps = 93/740 (12%) Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 L+ ++ I EP++ V A L++L ++V ++ E+ + + Sbjct: 35 LLLAALDRISSDEPDWTYVAATIRLQQLYKQVAEK-----RQMRPEEVYTGFAHNVTYLV 89 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 E G + L + DL L L D F YLGL L DRY G +E+PQ Sbjct: 90 EAGFYDQDLAGAYQKDDLERLEAALNKSNDSKFTYLGLHTLIDRYLTRDHEGHILELPQE 149 Query: 320 FFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 FM +AM L +E + + +E Y LS+ + +TPTL N+G H QLSSCF+ T+ Sbjct: 150 RFMIIAMTLMKEEKQSKRLDYVLEAYWALSNLYMTVATPTLSNAGKTHGQLSSCFIDTMD 209 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L GIF + + A L+K GG+G +R G+ I G G S GV+P++K N+TAV+ Sbjct: 210 DSLRGIFDSTTDAATLSKNGGGIGIYLGKIRAKGSSIKGFKGTSSGVLPWMKQLNNTAVS 269 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+Q G+R+GA+ YL+ WH D+ FLD + N GD+R+RTHD+ T +PDLFM++V Sbjct: 270 VDQLGQRQGAIAVYLDVWHKDIFSFLDAKLNNGDERKRTHDLFTGVCLPDLFMEKVEARE 329 Query: 498 GWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 W LF P EV + F YE R + + A+ + + Sbjct: 330 AWFLFDPHEVRQTMGFSLEDFYDEERGAGSFREKYEQCVRDPRLSK----ESVPAIEIMK 385 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ 595 +++ ETG P++ ++D N ++P H G+++ SNLCTEI N S+ Sbjct: 386 RVMISQLETGTPYMFYRDEANRQNPNAHCGMMYGSNLCTEIMQNMSATTIKEETTEDGKI 445 Query: 596 -------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + L+ I VR+LDNVIDIN + +A+ Sbjct: 446 LITKEAGDYVVCNLSSINLATAVTDGV-----LSRLIPIQVRMLDNVIDINNIEVPQARL 500 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG G+ L + + + S EA+ AD+ E I++ I AS+ELA+E+GAY Sbjct: 501 TNEKYRAIGLGTFGWHHLLAITGLRWESEEAINFADKLYEKIAYLTIEASMELAKEKGAY 560 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F+ S W G + + W L + V G+RN MA+AP Sbjct: 561 EKFENSAWHTGK--------------YFSQRNYTDEKWIALAEMVNRSGLRNGYLMAVAP 606 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 ++ A I G + SIDP Y+ Y + + V Sbjct: 607 NSSTAIIAGTTASIDPIYRKEYAEEKKNFRIPVTAP------------------------ 642 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 I + +A +ID +W ++ RQK IDQ S N+Y+ + K+L Sbjct: 643 -------DISPATTWYYKSAHDIDQIWSVKQNGARQKHIDQGVSFNIYVKNTVKAKELLD 695 Query: 888 IYRQAWLMGLKTTYYLRSRS 907 I+ AW GLK+TYY+RS S Sbjct: 696 IHLSAWKHGLKSTYYVRSTS 715 >gi|260582635|ref|ZP_05850424.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae NT127] gi|260094307|gb|EEW78206.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae NT127] Length = 756 Score = 446 bits (1146), Expect = e-122, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 317/794 (39%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDAQEDLDD 747 >gi|85059562|ref|YP_455264.1| ribonucleotide-diphosphate reductase subunit alpha [Sodalis glossinidius str. 'morsitans'] gi|84780082|dbj|BAE74859.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Sodalis glossinidius str. 'morsitans'] Length = 760 Score = 446 bits (1146), Expect = e-122, Method: Composition-based stats. Identities = 195/806 (24%), Positives = 322/806 (39%), Gaps = 71/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + N ++ +++ A GL++VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRKETINLDKIHRVIDWAAEGLENVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ R + Sbjct: 64 KAAADLISREAPDYQYLAARLAVFHLRKKAYGQFEPPKL-----------YDHVSRLVTM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLTDYSAEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLAQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VA L T + FYN +S+F TP + T Q SSC L D Sbjct: 173 YMLVAACLFSGYPRTTRLDYVKRFYNAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEANRVRHMDYGVQLNKLMYQRLVKGEY 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TL SP +V L+D + EFE Y YE+ + R+I AVAL+ M+ Sbjct: 353 ITLLSPSDVPGLYDAFFADQDEFERLYTLYEQDSSIR----QRRIKAVALFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP + SNLC EI L + E + G I L Sbjct: 409 TGRIYVQNVDHCNTHSPFDAAVAPIRQSNLCLEIALPTKPLEDVNDDSGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLGELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGVGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS +LA+ERGA F + + QG+ P+D+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNDLARERGACPWFNETTYAQGILPVDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + ++ W+ L+ +K G+RNS A+ P+ T + I + ++P + + Sbjct: 586 DLDGI-VSEPLHYDWEALRADIKQHGLRNSTLSALMPSETSSQISNATNGLEPPRGLVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + K ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPESIPLQKAY-----ELLWEMPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGVMQKFVDQAISANTNYDPSRFPAGKVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R E + + + Sbjct: 734 TRD--GAEDAQEDMQSTQQDDCESGA 757 >gi|16130169|ref|NP_416737.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|74312754|ref|YP_311173.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei Ss046] gi|89109051|ref|AP_002831.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|157161717|ref|YP_001459035.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli HS] gi|170019453|ref|YP_001724407.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ATCC 8739] gi|170081852|ref|YP_001731172.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|194433299|ref|ZP_03065579.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] gi|194436240|ref|ZP_03068342.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] gi|238901408|ref|YP_002927204.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli BW2952] gi|253772843|ref|YP_003035674.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162245|ref|YP_003045353.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B str. REL606] gi|256022084|ref|ZP_05435949.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 4_1_40B] gi|297516088|ref|ZP_06934474.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli OP50] gi|300931420|ref|ZP_07146749.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] gi|300948932|ref|ZP_07162993.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|300958920|ref|ZP_07171023.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] gi|301024216|ref|ZP_07187915.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|301647676|ref|ZP_07247470.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|307138892|ref|ZP_07498248.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli H736] gi|312973511|ref|ZP_07787683.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1827-70] gi|331642863|ref|ZP_08343998.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|2507304|sp|P00452|RIR1_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit alpha; AltName: Full=Protein B1; AltName: Full=Ribonucleoside-diphosphate reductase 1 R1 subunit; AltName: Full=Ribonucleotide reductase 1 gi|2914218|pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli gi|2914220|pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli gi|2914222|pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli gi|2914311|pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying The Specificity Site From Escherichia Coli gi|2914313|pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying The Specificity Site From Escherichia Coli gi|2914315|pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying The Specificity Site From Escherichia Coli gi|284793830|pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A Resolution gi|284793831|pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A Resolution gi|284793832|pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A Resolution gi|1799581|dbj|BAA16053.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|2367133|gb|AAC75294.1| ribonucleoside-diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|46275274|emb|CAA30056.2| ribonucleotide reductase [Escherichia coli K-12] gi|73856231|gb|AAZ88938.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella sonnei Ss046] gi|157067397|gb|ABV06652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli HS] gi|169754381|gb|ACA77080.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli ATCC 8739] gi|169889687|gb|ACB03394.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|194418393|gb|EDX34482.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] gi|194424968|gb|EDX40953.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] gi|238863474|gb|ACR65472.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli BW2952] gi|242377868|emb|CAQ32636.1| nrdA, subunit of B1 protein and GDP reductase [multifunctional] [Escherichia coli BL21(DE3)] gi|253323887|gb|ACT28489.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974146|gb|ACT39817.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli B str. REL606] gi|253978313|gb|ACT43983.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli BL21(DE3)] gi|260448674|gb|ACX39096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli DH1] gi|299880522|gb|EFI88733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|300314423|gb|EFJ64207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] gi|300451586|gb|EFK15206.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|300460790|gb|EFK24283.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] gi|301074206|gb|EFK89012.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|309702544|emb|CBJ01871.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli ETEC H10407] gi|310332106|gb|EFP99341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1827-70] gi|315136866|dbj|BAJ44025.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli DH1] gi|315615495|gb|EFU96127.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 3431] gi|320178794|gb|EFW53757.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii ATCC 9905] gi|323168603|gb|EFZ54283.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella sonnei 53G] gi|323936631|gb|EGB32917.1| ribonucleotide reductase [Escherichia coli E1520] gi|323941072|gb|EGB37259.1| ribonucleotide reductase [Escherichia coli E482] gi|323961540|gb|EGB57148.1| ribonucleotide reductase [Escherichia coli H489] gi|323973063|gb|EGB68257.1| ribonucleotide reductase [Escherichia coli TA007] gi|331039661|gb|EGI11881.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|332093863|gb|EGI98917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii 5216-82] gi|332096124|gb|EGJ01127.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 155-74] gi|332344014|gb|AEE57348.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli UMNK88] Length = 761 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|113970254|ref|YP_734047.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. MR-4] gi|113884938|gb|ABI38990.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. MR-4] Length = 762 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 188/805 (23%), Positives = 330/805 (40%), Gaps = 69/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + + ++ ++ A GL++VS V T+ +DG+ + +I Sbjct: 5 MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ + +E G Sbjct: 65 SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + +L + + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + + +FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EFE Y YE+ + + + + AV L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP + SNLC EI L + G I L A N Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + +L AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGM 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I F+ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFNETTYAQGILPIDTYKRDLDK 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W+ L++ +K G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 ICSEPL----HLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V +ELK ++ ++ + ++G + Sbjct: 646 ASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + + L A+ +G+KT YY + Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930 R S + + ++ + + Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759 >gi|331673747|ref|ZP_08374510.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] gi|331069020|gb|EGI40412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] Length = 761 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|262274471|ref|ZP_06052282.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Grimontia hollisae CIP 101886] gi|262221034|gb|EEY72348.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit [Grimontia hollisae CIP 101886] Length = 759 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 189/790 (23%), Positives = 311/790 (39%), Gaps = 70/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ G + + ++ ++ A GL +VS V ++ YDG+ D+ +I Sbjct: 4 QITVLKRSGIKENIDLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYDGIKTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++M +E Sbjct: 64 KAAADLISEETPDYQYLAARLAVFHLRKKAYGRFEPPTLLDHVNKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E +L L + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYTAEELNILDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S F TP + T Q SSC L D Sbjct: 173 YIMVAACLFANYPKETRLDYIRRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K Sbjct: 233 SLDSINATASAIVRYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQINKLMYTRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFADQAEFERLYVKYE----NDPSIQRETRKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPIRQSNLCLEIALPTKPLTNVEDDQGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L +R LD+++D + + A+K+ R +G+G++ F L Sbjct: 469 LGAIKELDELEELADLTIRALDSLLDYQDYPLPAARKATMNRRTLGVGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + ASV LA+ERGA +F + + +G+ PID+ + Sbjct: 529 VRYSDGSANGLTHRTFEAIQYYLLKASVGLAKERGACPAFNETNYAKGLLPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + WD L+ + G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----CDEPLHYDWDALRAEIIEHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ +++ +DG + Sbjct: 645 KASKDGILKQVVPEYEK-----YKDSYELLWNIESNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ +G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPSKQPGGKVPMKLLLKDLLSAYKLGVKTLYYHN 733 Query: 905 SR-SATSVEK 913 +R A +K Sbjct: 734 TRDGADDAQK 743 >gi|157833699|pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1 Length = 761 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|30995466|ref|NP_439801.2| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae Rd KW20] gi|260581254|ref|ZP_05849072.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae RdAW] gi|1172938|sp|P43754|RIR1_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|260092081|gb|EEW76026.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus influenzae RdAW] Length = 756 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 318/794 (40%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGSE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 734 TRDGAEDVQEDLDD 747 >gi|215275537|sp|P0C8H9|RIR1_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit Length = 778 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 213/785 (27%), Positives = 361/785 (45%), Gaps = 74/785 (9%) Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI L +Y+ + AR + +L + ++ KA + ++ Sbjct: 35 QELISYCSALTILHYDYSTLAARLSVYQLHQSTASSF----SKAVRLQAAQSCSRLSPQF 90 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQ 318 ++ K + + + + Y RD+ LG++ + + Y L +G +E PQ Sbjct: 91 VDVVYKYKAI-----------FDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQ 139 Query: 319 AFFMRVA-MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +MRVA M + + K + Y+LLS ++PT+FN+GT+ PQLSSCFL V Sbjct: 140 DAYMRVAIMIYGMGKVVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNVN 199 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L ++ ++ +++ GG+G + +R + I G+ +S G+ ++ + N + Sbjct: 200 DNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCY 259 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQGG R GA YLE WH D+ FL++ + + R ++ W+PDLFM+ + Sbjct: 260 ANQGGLRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILE 319 Query: 495 QN------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFR 538 W LFSPD+ +LH ++ +EF+ Y Y E + Sbjct: 320 DQIHNRGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTG 374 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595 +A + + + + G+P+I FKD N +S HVG + +SNLC E+T+ Sbjct: 375 VTTAKEIIKAWFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKA 434 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 E VCNL ++NL A N +DY L LDN+ID + E ++SN HR Sbjct: 435 EQGVCNLAAVNLAAFIRENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRP 494 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IG+G+ G L I + SPEA+ + + + + A+ S+ELA+E+G++ SF GS Sbjct: 495 IGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSA 554 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT------IGMRNSNCMAIAPT 769 +G+ D ++ +K + G+RN A+ PT Sbjct: 555 ASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLRLAAIQGVRNGYLTALMPT 614 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 AT +N G ++ +P NLY + +SG+F V+N +L+++LK+ +LW EA+ L G Sbjct: 615 ATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGG 674 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIY 889 SI +I IP +++ + T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + Sbjct: 675 SIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVL 734 Query: 890 RQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 W GL T +YY +K ++ + NA Sbjct: 735 VLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA----------------------- 771 Query: 949 ECEVC 953 +CE C Sbjct: 772 DCEAC 776 >gi|114047557|ref|YP_738107.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. MR-7] gi|113888999|gb|ABI43050.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. MR-7] Length = 762 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 187/805 (23%), Positives = 329/805 (40%), Gaps = 69/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + + ++ ++ A GL++VS V T+ +DG+ + +I Sbjct: 5 MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ + +E G Sbjct: 65 SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + +L + + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + + +FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EFE Y YE+ + + + + AV L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEQDSSIRK----KTLKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP + SNLC EI L + G I L A N Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + +L AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPIKAAEISSMNRRTLGIGVINFANYLAKNGM 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I F+ + AS+ LA+E+ A F + + QG+ PID+ + Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQDACPLFNETTYAQGILPIDTYKRDLDK 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W+ L++ +K G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 ICSEPL----HLDWETLRQDIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V +ELK ++ ++ + ++G + Sbjct: 646 ASKDGQLKQVVPDF-DELK----YNYELLWQMPSNEGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + + L A+ +G+KT YY + Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPTRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930 R S + + ++ + + Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759 >gi|188492275|ref|ZP_02999545.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] gi|188487474|gb|EDU62577.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] Length = 761 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDDSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|82544521|ref|YP_408468.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii Sb227] gi|81245932|gb|ABB66640.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella boydii Sb227] gi|320184865|gb|EFW59653.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri CDC 796-83] gi|332094119|gb|EGI99171.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii 3594-74] Length = 761 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+G F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGECPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|90412218|ref|ZP_01220224.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium profundum 3TCK] gi|90326942|gb|EAS43327.1| ribonucleotide-diphosphate reductase alpha subunit [Photobacterium profundum 3TCK] Length = 753 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 186/789 (23%), Positives = 312/789 (39%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ +++ A GL +VS V +++ YDG+ +D+ +I Sbjct: 4 QLTVTKRDGRKETIELDKIHRVIDWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ A + + + Sbjct: 64 KAAADLISEESPDYQYLAARLAIFNLRKKAYGQFEPPTLFA-----------HVTNLVNK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ + L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKGQN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ A + I A+ L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASIKK----ESIKAIELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A++S R +G+G++ + L Sbjct: 469 LGAIDTLDDLEELADLTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + ASV LA+E+GA +F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNVTHQAFEAIQYYLLKASVGLAKEQGACPAFNETTYAQGILPIDTYKKAID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 DVCSEEL----HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEYSK-----YKDNYELLWNIGSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + K L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPSKQANGKVPMKLLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEK 913 +R S + Sbjct: 734 TRDGASDNQ 742 >gi|212638242|ref|YP_002314762.1| ribonucleotide-diphosphate reductase subunit alpha [Anoxybacillus flavithermus WK1] gi|212559722|gb|ACJ32777.1| Ribonucleotide reductase, alpha subunit [Anoxybacillus flavithermus WK1] Length = 758 Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats. Identities = 241/798 (30%), Positives = 378/798 (47%), Gaps = 94/798 (11%) Query: 153 TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212 N + + ++ +SS+ + T +++ S D+ LI ++ I Sbjct: 5 QQTEVNEETIRTLLFHIFKDFPHLSSERYIERTIRSLTYTKSHDDMMNKLILNALDEITV 64 Query: 213 E-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 E P++ V AR L++L E + + E + G+ + E Sbjct: 65 EQPDWTFVAARLYLQQLYNEAAINRGYDVS-----DTYRYFYELQTMLVNLGIYDPFVLE 119 Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330 +L + ++D F Y+GL+ L DRY +G E+PQ F+ +A+ L + Sbjct: 120 RYTKEELQEAGTWIDPKKDEQFTYIGLKTLVDRYLAKGYDGEIYELPQERFLTIALTLMV 179 Query: 331 KE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQ 388 E ++ + E Y LS+ + +TPT N+G + QLSSCF+ TV D L GI+ + Sbjct: 180 NESKEKRMELVKEAYWALSNQYMTVATPTYANAGKSYGQLSSCFIDTVDDSLIGIYESNT 239 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 + A L+K GG+G +R + I G G S GVIP+++ N+TAV+V+Q G R+G++ Sbjct: 240 DVARLSKGGGGIGVYLGKIRARNSDIKGFKGVSSGVIPWMRQLNNTAVSVDQLGTRQGSI 299 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL+ WH D+ FLD + N GD+R++ HD+ IPDLFM++V + W LF P EV Sbjct: 300 AVYLDVWHKDIFSFLDAKLNNGDERQKCHDLFYGVCIPDLFMEQVEKRGDWYLFDPHEVK 359 Query: 509 DLHDL-----YGKEFEIAY----------ENYERQADRGEIKVFRKISAVALWRKMLTML 553 + E Y E YE + E+ R + A+ + +++L Sbjct: 360 KVMGWKDTDGNPLGLEDFYDEERGRGSFREKYEECINHPELSKER-VPAIEIMKRILKSQ 418 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------ 595 ETG P++ ++D N +P +H G+++SSNLCTEI N S Sbjct: 419 LETGTPYMFYRDEANRMNPNKHAGMIYSSNLCTEIMQNMSPTTVTKEYTQDGEIIIHKKP 478 Query: 596 -ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE--KAKKSNHT 652 + VCNL SI+L + D L I VR+LDNVID+N + IE +A +N Sbjct: 479 GDFVVCNLSSIHLARAVQD-----DVLERLIPIQVRMLDNVIDLNENRIEVLQAVMTNKK 533 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RAIGLG + L L I + S E+V+ AD+ E I++ I AS+ELA+E+GAY +F Sbjct: 534 YRAIGLGAFSWHHLLALKGIKWNSEESVDFADKLFEKIAYLTIRASMELAKEKGAYPAFA 593 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G + ++R + + L WDELK++V G+RN MA AP A+ Sbjct: 594 GSDWHTGKYF--------DLRGYHSHDE---LDWDELKQQVMRHGIRNGYLMAPAPNAST 642 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S DP + LY + + V +L + W Sbjct: 643 SVLANGTASCDPVFNRLYFEEKKNYKIPVTVP----DLNAKTFW---------------- 682 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + A+E+D I + RQK +DQ+ S NLY+ + K L ++ Sbjct: 683 -----------FYENAYEVDQKMSIRQNAARQKHVDQSLSFNLYVYNTIKAKDLLDLHLT 731 Query: 892 AWLMGLKTTYYLRSRSAT 909 AW LK+TYY+RS + T Sbjct: 732 AWKERLKSTYYVRSTAVT 749 >gi|24373962|ref|NP_718005.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella oneidensis MR-1] gi|24348404|gb|AAN55449.1|AE015682_4 ribonucleoside-diphosphate reductase, alpha subunit [Shewanella oneidensis MR-1] Length = 762 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 188/805 (23%), Positives = 326/805 (40%), Gaps = 69/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + + ++ ++ A GL++VS V T+ +DG+ + +I Sbjct: 5 MTVTKRCGARETIDLDKIHRVITWAAKGLKNVSVSEVELRTHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E P+Y + AR + LR++ ++ + +E G Sbjct: 65 SAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPKL-----------YDHVTKLVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + +L + + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDMHILQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + + +FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFARYPKETRLQYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EFE Y YE+ + + + + AV L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTLKAVDLFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP + SNLC EI L + G I L A N Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L AVR LDN++D + I+ A+ S+ R +G+G++ F + L + Sbjct: 470 GTITDLAELEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVINFANYLAKNGM 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I F+ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 530 KYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGILPIDTYKRDLDK 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 ICSEPL----HLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + LK + ++ + ++G + Sbjct: 646 ASKDGQLKQVVPDF-DTLK----NNYELLWQMPSNEGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + L A+ +G+KT YY + Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPARFEGRKVPMQTLLKDLLNAYKLGVKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930 R S + + ++ + + Sbjct: 735 RDGASDQHDDITNIEKEDDGCAGGA 759 >gi|170767383|ref|ZP_02901836.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] gi|170123717|gb|EDS92648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] Length = 761 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 195/781 (24%), Positives = 313/781 (40%), Gaps = 69/781 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISREAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEEI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTQYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V ++ + +DG + Sbjct: 646 ASKDGILRQVVPDYEPL-----HDAYELLWKMPGNDGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK+IDQ+ S N D + ++L A+ G+KT YY + Sbjct: 681 ------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNT 734 Query: 906 R 906 R Sbjct: 735 R 735 >gi|146293169|ref|YP_001183593.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella putrefaciens CN-32] gi|145564859|gb|ABP75794.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella putrefaciens CN-32] Length = 762 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 188/806 (23%), Positives = 327/806 (40%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + + G + + +++ ++ A GL++VS V ++ YDG+ + +I Sbjct: 4 TITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ ++ + +E Sbjct: 64 KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPAL-----------YDHVTKLVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + + +L + + + RD F Y ++ L +Y + E Q Sbjct: 113 GKYDMHILQDYTREELDLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + K +FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G +PF K + Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ + + + I AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP + SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALN 468 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L Sbjct: 469 LGAIKELSELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I F+ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 MKYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+ +K G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KI----CNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + ++ + +DG + Sbjct: 645 KASKDGQLKQVVPDF-DTLKD----NYELLWKMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R S + + ++ + + Sbjct: 734 TRDGASDQHDDITNLEKEDDGCAGGA 759 >gi|319426319|gb|ADV54393.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella putrefaciens 200] Length = 762 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 188/806 (23%), Positives = 327/806 (40%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + + G + + +++ ++ A GL++VS V ++ YDG+ + +I Sbjct: 4 TITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ ++ + +E Sbjct: 64 KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPAL-----------YDHVTKLVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + + +L + + + RD F Y ++ L +Y + E Q Sbjct: 113 GKYDMHILQDYTREELDLMNTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + K +FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G +PF K + Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ + + + I AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP + SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALN 468 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L Sbjct: 469 LGAIKELSELEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I F+ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 MKYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+ +K G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KI----CNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + ++ + +DG + Sbjct: 645 KASKDGQLKQVVPDF-DTLKD----NYELLWKMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R S + + ++ + + Sbjct: 734 TRDGASDQHDDITNLEKEDDGCAGGA 759 >gi|1574509|gb|AAC23305.1| ribonucleoside-diphosphate reductase, alpha chain (nrdA) [Haemophilus influenzae Rd KW20] Length = 781 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 186/794 (23%), Positives = 318/794 (40%), Gaps = 69/794 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 29 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 88 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 89 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 137 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 138 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 197 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 198 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 257 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 258 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 317 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + + Sbjct: 318 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGSE 377 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 378 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 433 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 434 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 493 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 494 LGKIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNG 553 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 554 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLD 613 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 614 S----LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 669 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 670 KASKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH------------------- 705 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L A+ GLKT YY Sbjct: 706 -------LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 758 Query: 905 SRSATSVEKSTLKG 918 +R + L Sbjct: 759 TRDGAEDVQEDLDD 772 >gi|323171913|gb|EFZ57557.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli LT-68] Length = 761 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L + Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|188533367|ref|YP_001907164.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia tasmaniensis Et1/99] gi|188028409|emb|CAO96270.1| Ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia tasmaniensis Et1/99] Length = 761 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 200/782 (25%), Positives = 315/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A GLQ+VS V ++ Y+G+ SD+ +I Sbjct: 4 SLLVTKRDGRTERIDLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ M +E Sbjct: 64 KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L T + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRTTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFANQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIESLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N +L W+ L++ VKT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----CNTPLQLDWEGLRESVKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYER-LKDQ----YELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D K+L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|15802781|ref|NP_288808.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 EDL933] gi|15832371|ref|NP_311144.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|26248622|ref|NP_754662.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli CFT073] gi|91211527|ref|YP_541513.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UTI89] gi|110642442|ref|YP_670172.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 536] gi|117624428|ref|YP_853341.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli APEC O1] gi|157156706|ref|YP_001463583.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli E24377A] gi|168761334|ref|ZP_02786341.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168787140|ref|ZP_02812147.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|170682262|ref|YP_001744430.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SMS-3-5] gi|191170225|ref|ZP_03031779.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] gi|217327968|ref|ZP_03444051.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218559151|ref|YP_002392064.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli S88] gi|218690397|ref|YP_002398609.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ED1a] gi|218695840|ref|YP_002403507.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 55989] gi|218700705|ref|YP_002408334.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI39] gi|218705764|ref|YP_002413283.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UMN026] gi|227887292|ref|ZP_04005097.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|237704710|ref|ZP_04535191.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|261223313|ref|ZP_05937594.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. FRIK2000] gi|261259137|ref|ZP_05951670.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. FRIK966] gi|291283478|ref|YP_003500296.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|293405701|ref|ZP_06649693.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1412] gi|293410598|ref|ZP_06654174.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] gi|293446577|ref|ZP_06662999.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B088] gi|298381382|ref|ZP_06990981.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] gi|300818166|ref|ZP_07098378.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] gi|300822683|ref|ZP_07102821.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 119-7] gi|300897698|ref|ZP_07116096.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] gi|300918604|ref|ZP_07135192.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] gi|300936791|ref|ZP_07151684.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] gi|300981253|ref|ZP_07175430.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] gi|300983267|ref|ZP_07176506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|301022394|ref|ZP_07186278.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] gi|301048986|ref|ZP_07195973.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|306814653|ref|ZP_07448815.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] gi|312967535|ref|ZP_07781750.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|331647889|ref|ZP_08348981.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] gi|331658315|ref|ZP_08359277.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] gi|331663741|ref|ZP_08364651.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] gi|331678185|ref|ZP_08378860.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] gi|331683910|ref|ZP_08384506.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] gi|12516569|gb|AAG57363.1|AE005455_4 ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Escherichia coli O157:H7 str. EDL933] gi|26109027|gb|AAN81230.1|AE016763_189 Ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli CFT073] gi|13362586|dbj|BAB36540.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|91073101|gb|ABE07982.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Escherichia coli UTI89] gi|110344034|gb|ABG70271.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli 536] gi|115513552|gb|ABJ01627.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli APEC O1] gi|157078736|gb|ABV18444.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E24377A] gi|170519980|gb|ACB18158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli SMS-3-5] gi|189368234|gb|EDU86650.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189372942|gb|EDU91358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC869] gi|190909741|gb|EDV69326.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] gi|209765528|gb|ACI81076.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|209765530|gb|ACI81077.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|209765534|gb|ACI81079.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|217320335|gb|EEC28760.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|218352572|emb|CAU98351.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli 55989] gi|218365920|emb|CAR03662.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli S88] gi|218370691|emb|CAR18502.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli IAI39] gi|218427961|emb|CAR08881.2| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli ED1a] gi|218432861|emb|CAR13755.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli UMN026] gi|222033995|emb|CAP76736.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli LF82] gi|226901076|gb|EEH87335.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|227835642|gb|EEJ46108.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|281179325|dbj|BAI55655.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia coli SE15] gi|284922225|emb|CBG35307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Escherichia coli 042] gi|290763351|gb|ADD57312.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|291323407|gb|EFE62835.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B088] gi|291427909|gb|EFF00936.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1412] gi|291471066|gb|EFF13550.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] gi|294492897|gb|ADE91653.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli IHE3034] gi|298278824|gb|EFI20338.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] gi|300299178|gb|EFJ55563.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|300307617|gb|EFJ62137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] gi|300358576|gb|EFJ74446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] gi|300397544|gb|EFJ81082.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] gi|300408601|gb|EFJ92139.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|300414256|gb|EFJ97566.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] gi|300458121|gb|EFK21614.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] gi|300524883|gb|EFK45952.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 119-7] gi|300529310|gb|EFK50372.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] gi|305852047|gb|EFM52499.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] gi|307554300|gb|ADN47075.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli ABU 83972] gi|312287732|gb|EFR15637.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|312946855|gb|ADR27682.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O83:H1 str. NRG 857C] gi|315285848|gb|EFU45288.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 110-3] gi|315292182|gb|EFU51534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 153-1] gi|315298060|gb|EFU57329.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 16-3] gi|320192145|gb|EFW66790.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC1212] gi|320196103|gb|EFW70727.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli WV_060327] gi|320641060|gb|EFX10539.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. G5101] gi|320646449|gb|EFX15368.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320651546|gb|EFX19926.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320657298|gb|EFX25100.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663125|gb|EFX30438.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320667817|gb|EFX34725.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|323184147|gb|EFZ69524.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1357] gi|323188038|gb|EFZ73333.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli RN587/1] gi|323945043|gb|EGB41108.1| ribonucleotide reductase [Escherichia coli H120] gi|323956003|gb|EGB51756.1| ribonucleotide reductase [Escherichia coli H263] gi|323967676|gb|EGB63088.1| ribonucleotide reductase [Escherichia coli M863] gi|323977568|gb|EGB72654.1| ribonucleotide reductase [Escherichia coli TW10509] gi|324006610|gb|EGB75829.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 57-2] gi|324013120|gb|EGB82339.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 60-1] gi|325496726|gb|EGC94585.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ECD227] gi|326344043|gb|EGD67804.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1044] gi|327252503|gb|EGE64162.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli STEC_7v] gi|330912065|gb|EGH40575.1| ribonucleotide reductase of class 1a (aerobic), alpha subunit [Escherichia coli AA86] gi|331043613|gb|EGI15751.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] gi|331056563|gb|EGI28572.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] gi|331059540|gb|EGI31517.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] gi|331074645|gb|EGI45965.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] gi|331078862|gb|EGI50064.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] Length = 761 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|24113614|ref|NP_708124.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 301] gi|30063668|ref|NP_837839.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 2457T] gi|24052671|gb|AAN43831.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella flexneri 2a str. 301] gi|30041923|gb|AAP17649.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella flexneri 2a str. 2457T] gi|281601679|gb|ADA74663.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017] gi|313651059|gb|EFS15458.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2a str. 2457T] gi|332754882|gb|EGJ85247.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 4343-70] gi|332755285|gb|EGJ85649.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-671] gi|332756581|gb|EGJ86932.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2747-71] gi|332766055|gb|EGJ96265.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2930-71] gi|333001381|gb|EGK20949.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri VA-6] gi|333002008|gb|EGK21574.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-218] gi|333002602|gb|EGK22162.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-272] gi|333016363|gb|EGK35694.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-304] gi|333016744|gb|EGK36072.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-227] Length = 761 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|324112771|gb|EGC06747.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 761 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|332306883|ref|YP_004434734.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174212|gb|AEE23466.1| ribonucleoside-diphosphate reductase, alpha subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 790 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 192/811 (23%), Positives = 313/811 (38%), Gaps = 71/811 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 L + G S + +++ ++ A GL +VS V + + YDG+ D+ L Sbjct: 22 NNLFVTKRTGERESIDLEKIHKVITWAAKGLNNVSVSQVEIKAHIQFYDGIKTEDIHETL 81 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI + P+Y + AR + LR++ A +M IE Sbjct: 82 IRSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPALFAHVTQM-----------IE 130 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 + L + + + + + + RD F Y ++ L +Y + G E Q Sbjct: 131 MQKYDQHLLSDYSEAEFQEMDDYIDHWRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQF 190 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L + + FY+ S F TP + T Q SSC L Sbjct: 191 LYILVAACLFADYPKDTRMDYIKRFYDATSKFKISLPTPIMAGVRTPTRQFSSCVLIEAG 250 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 251 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 310 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ ++ Sbjct: 311 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKDQ 370 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + +FE Y YE+ + ++ AV L+ + Sbjct: 371 HISLFSPSDVPGLYDAFFADQAKFEELYVKYEQDDSIRKT----QVKAVELFSLFMQERA 426 Query: 555 ETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG ++ D CN SP + SNLC EI L + E G I L Sbjct: 427 STGRIYLQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTKPLEHVNDENGEIALCTLSAF 486 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + A AVR LDN++D + + A + R +G+G++ F L Sbjct: 487 NLGAIESVEDFAEMADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGIGVINFAYYLAKN 546 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + + E + +H + AS LA+E+GA F + + QG+ PID+ Sbjct: 547 GVKYSDGSANGLIHRTFEAMQYHLMRASCNLAKEKGACPKFDETTYSQGIMPIDTYKKDL 606 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + WD L+ +K G+RNS A+ P+ T + I + I+P ++ Sbjct: 607 DKI----CDEPLHCDWDSLRADIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHIS 662 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VKS+ G V + ++ DL +DG + Sbjct: 663 VKSSKDGVLKQVVPEYERLKDKY-----ELLWDLPSNDGYLQ------------------ 699 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY- 902 QK++DQ S N D + K L A+ +G+KT YY Sbjct: 700 --------LTGIMQKFVDQTISANTSYDPNKYDGGKVPMKLLLKDLLTAYQLGVKTLYYH 751 Query: 903 -LRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 R +A + ++ AV D + Sbjct: 752 NTRDGAADTSQQELKSAQFVPQEAVVEEDDD 782 >gi|323952029|gb|EGB47903.1| ribonucleotide reductase [Escherichia coli H252] Length = 761 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 195/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + E+ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHETFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|215487451|ref|YP_002329882.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|215265523|emb|CAS09926.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O127:H6 str. E2348/69] Length = 761 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMS 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|113461339|ref|YP_719408.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus somnus 129PT] gi|112823382|gb|ABI25471.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Haemophilus somnus 129PT] Length = 756 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 189/795 (23%), Positives = 319/795 (40%), Gaps = 69/795 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL++VS +V +++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFEPPKL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSRYPKETRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L + Sbjct: 469 LGALENLDELEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYAYYLAKNN 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 N----LTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKGV 919 +R + L Sbjct: 734 TRDGAEDMQEDLDDA 748 >gi|170718503|ref|YP_001783715.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus somnus 2336] gi|168826632|gb|ACA32003.1| ribonucleoside-diphosphate reductase, alpha subunit [Haemophilus somnus 2336] Length = 756 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 190/795 (23%), Positives = 320/795 (40%), Gaps = 69/795 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL++VS +V +++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGNKEPIDLDKIHRVITWAAEGLENVSVSLVELKSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAVFHLRKKAYGHFEPPKL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDQALLTDYTREEWDEMDGFLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSRYPKETRLDYIHRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQNKFETLYLKYEQDPAVRK----RSVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V + SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L + Sbjct: 469 LGALENLDELEELADLAVRALDALLDYQDYPVAAAKRSSLARRSLGIGVINYAYYLAKNN 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGACEYFHETTYAQGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 N----LTKEPLHYDWEALRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N + + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPDYENLGE-----NYELLWDIPSNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K L A+ GLKT YY Sbjct: 681 -------LVGIMQKFIDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKGV 919 +R + L Sbjct: 734 TRDGAEDMQEDLDDA 748 >gi|120598754|ref|YP_963328.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sp. W3-18-1] gi|120558847|gb|ABM24774.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella sp. W3-18-1] Length = 762 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 188/806 (23%), Positives = 327/806 (40%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + + G + + +++ ++ A GL++VS V ++ YDG+ + +I Sbjct: 4 TITVTKRCGERENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFYDGIPTETIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ ++ + +E Sbjct: 64 KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPAL-----------YDHVTKLVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + + +L + + + RD F Y ++ L +Y + E Q Sbjct: 113 GKYDMHILQDYTREELDLMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + K +FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G +PF K + Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ + + + I AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRK----KTIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP + SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPNGEIALCTLSALN 468 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L Sbjct: 469 LGAIKELSELERLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I F+ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 MRYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+ +K G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KI----CNEPLHLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + ++ + +DG + Sbjct: 645 KASKDGQLKQVVPDF-DTLKD----NYELLWKMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R S + + ++ + + Sbjct: 734 TRDGASDQHDDITNLEKEDDGCAGGA 759 >gi|110806204|ref|YP_689724.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 5 str. 8401] gi|110615752|gb|ABF04419.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella flexneri 5 str. 8401] Length = 761 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDVSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|237732273|ref|ZP_04562754.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] gi|226907812|gb|EEH93730.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] Length = 761 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 193/783 (24%), Positives = 317/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGSTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ + +E Sbjct: 64 KAAADLISREAPDYQYLAARLAIFHLRKKAYGEFEPPKL-----------FDHVVKMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 469 LGAIESLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N + W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AIA----NEPLHMDWEQLRESIKTYGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + L + +E+ Sbjct: 645 KASKDGILRQVVPDY--------------------------------EHLHDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|2914234|pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli gi|2914236|pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli gi|2914238|pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli Length = 761 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSAS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|191166528|ref|ZP_03028358.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] gi|193062323|ref|ZP_03043418.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|193068151|ref|ZP_03049115.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|194427206|ref|ZP_03059757.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] gi|209919686|ref|YP_002293770.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SE11] gi|218554797|ref|YP_002387710.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI1] gi|256017604|ref|ZP_05431469.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] gi|260844830|ref|YP_003222608.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|260856284|ref|YP_003230175.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|260868964|ref|YP_003235366.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O111:H- str. 11128] gi|307311199|ref|ZP_07590843.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|309793114|ref|ZP_07687542.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|332278614|ref|ZP_08391027.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] gi|190903488|gb|EDV63207.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] gi|192931989|gb|EDV84588.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|192958430|gb|EDV88869.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|194414827|gb|EDX31098.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] gi|209912945|dbj|BAG78019.1| ribonucleoside diphosphate reductase alpha subunit [Escherichia coli SE11] gi|218361565|emb|CAQ99156.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli IAI1] gi|257754933|dbj|BAI26435.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257759977|dbj|BAI31474.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|257765320|dbj|BAI36815.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O111:H- str. 11128] gi|306908705|gb|EFN39202.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|308123400|gb|EFO60662.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|315061534|gb|ADT75861.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli W] gi|320199829|gb|EFW74418.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli EC4100B] gi|323156511|gb|EFZ42665.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli EPECa14] gi|323161695|gb|EFZ47578.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E128010] gi|323176839|gb|EFZ62429.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1180] gi|323377885|gb|ADX50153.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli KO11] gi|324020906|gb|EGB90125.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 117-3] gi|324117883|gb|EGC11782.1| ribonucleotide reductase [Escherichia coli E1167] gi|332100966|gb|EGJ04312.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] Length = 761 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L + Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|152979131|ref|YP_001344760.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus succinogenes 130Z] gi|150840854|gb|ABR74825.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinobacillus succinogenes 130Z] Length = 756 Score = 445 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 188/795 (23%), Positives = 317/795 (39%), Gaps = 71/795 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +G + +L ++ A GL +VS V ++ Y+G+ +D+ +I Sbjct: 4 TLMVTKRNGKQEPLDLDKLHRVITWAAEGLHNVSVSQVELRSHIQFYEGIRTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI K+ P+Y + AR + LR++ E+ + +E Sbjct: 64 KSAADLISKDAPDYQYLAARLSVFHLRKKAFGQFEPPHL-----------YEHVKKLVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + L + RD F Y + L +Y + G E Q Sbjct: 113 GKYDQALLTDYGREEWEQMNDFLDHWRDMNFSYAATKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ SSF TP + T Q SSC L D Sbjct: 173 YILVAASLFSQYPKATRLDYVRRFYDATSSFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGQIRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATVYYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +FE Y YE+ + R + A+ L+ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDKFEQLYVQYEQDPAIRK----RSVKAIELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D N SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIHNVDHTNTHSPFDPSVAPVRQSNLCLEIALPTKPLQNINDEDGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L + AVR LD ++D + + A++S+ R++G+G++ + L + Sbjct: 469 LGKLENLDELDNLADLAVRALDALLDYQDYPVAAARRSSLGRRSLGIGVINYAYYLAKNN 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y++ A + + E I ++ + AS+ LA+E+G F + + QG+ PID+ + Sbjct: 529 MRYSNGSANALTHRTFEAIQYYLLKASMNLAKEQGKCELFHETRYAQGILPIDTYKKDVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ ++ G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 G----LTDEPLHYDWETLRADIQKYGLRNSTVTALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++L + + +++ Sbjct: 645 KASKDGILKQVVPDY--------------------------------ENLGENYELLWDM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 M + QK++DQA S N D + K L A+ GLKT YY Sbjct: 673 PTMDGYLHLVGIMQKFVDQAISANTNYDPQRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQ 732 Query: 904 RSRSATSVEKSTLKG 918 +R + + Sbjct: 733 NTRDGAEDAQEDMDD 747 >gi|300903616|ref|ZP_07121534.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|301303306|ref|ZP_07209431.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|300404352|gb|EFJ87890.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|300841480|gb|EFK69240.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|315255169|gb|EFU35137.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 85-1] Length = 761 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|212712303|ref|ZP_03320431.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM 30120] gi|212685049|gb|EEB44577.1| hypothetical protein PROVALCAL_03389 [Providencia alcalifaciens DSM 30120] Length = 763 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 198/802 (24%), Positives = 313/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL +VS V + YDG+ SD+ +I Sbjct: 4 SLLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ A + +E Sbjct: 64 KAAADLITGETPDYQYLAARLAIFNLRKKAYGQFEPPKLYA-----------HVKHLVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + D + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYTEADFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSHYPQATRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ E + AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQD----ETIRKSSVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AKK + R +G+G++ + L Sbjct: 469 LGAIESLDELEELAILAVRALDALLDYQDYPIPAAKKGSMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKRELD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ +K G+RNS A+ P+ T + I + I+P + + Sbjct: 589 K----LTNEPLHYDWEALRAEIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ + + G + Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNSGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISSNTNYDPTRFPNGKVPMNQLLKDLLLAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755 >gi|307129980|ref|YP_003881996.1| Ribonucleotide reductase of class Ia (aerobic), subunit alpha [Dickeya dadantii 3937] gi|306527509|gb|ADM97439.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Dickeya dadantii 3937] Length = 762 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 193/807 (23%), Positives = 317/807 (39%), Gaps = 71/807 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ ++ + +E Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------HDHVIKMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ A L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFTNQDEFERLYVKYEQDDSIRK----KQLKAAELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAISSLHELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS +LA+E+GA F + + QG+ PIDS + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPIDSYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 SICSEPL----HYDWEALRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +++ Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D +L A+ GLKT YY Sbjct: 673 PSNDGYLQLVGLMQKFVDQAISSNTNYDPARFPSGKVPMTQLLKDLLTAYKFGLKTLYYQ 732 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + L + + Sbjct: 733 NTRDGAEDAQDDLLDTAPQDDGCESGA 759 >gi|119774863|ref|YP_927603.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella amazonensis SB2B] gi|119767363|gb|ABL99933.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella amazonensis SB2B] Length = 782 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 190/805 (23%), Positives = 324/805 (40%), Gaps = 69/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + ++ +V A GL++VS V ++ ++G+ + +I Sbjct: 25 MTVTKRSGEREQIDLDKIHRVVTWAAKGLKNVSVSEVELRSHLQFFEGIPTEAIHETIIK 84 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ LY +E G Sbjct: 85 AAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LVEMG 133 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 R + E +L L + + + RD F Y ++ L +Y + E Q + Sbjct: 134 KYDRHILEDYTKEELDVLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 193 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + K +FY+ +S+F TP + T Q SSC L D Sbjct: 194 ILVAACLFAGYPKETRLKYVKDFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 253 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 254 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 313 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 314 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGENI 373 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + EFE Y YE++ + + + AV L+ M+ T Sbjct: 374 TLFSPSDVPGLYDAFFENQDEFERLYTKYEQEPSIRK----KSLKAVELFSLMMQERAST 429 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G ++ D CN SP + SNLC EI L + ++ G I L A N Sbjct: 430 GRIYVQNVDHCNTHSPFDSSVAPIRQSNLCLEIALPTKPLDSVDDTNGEIALCTLSALNL 489 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + ++L AVR LD+++D + I+ AK + R +G+G++ F + L Sbjct: 490 GAIENLEELEGLSDLAVRALDSLLDYQDYPIKAAKLGSMNRRTLGIGVINFANYLAKNGK 549 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I F+ + AS+ LA+E+GA +F + + QG+ PID+ + Sbjct: 550 KYSDGSANNLTHKTFEAIQFNLLKASMNLAKEKGACPAFHETTYSQGILPIDTYKRDLDK 609 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + VK Sbjct: 610 I----CDEPLHLDWEGLRADIKHYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 665 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V ++ + +DG + Sbjct: 666 ASKDGQLKQVVPDFDEL-----RNAYELLWQMPSNDGYLQ-------------------- 700 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + L A+ +GLKT YY + Sbjct: 701 ------LVGIMQKFVDQAISANTNYDPAKFEGRKVPMQLLLKDLLTAYKLGLKTLYYHNT 754 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930 R + + + V+ + + Sbjct: 755 RDGATDQHDDIAVVEKEDDGCAGGA 779 >gi|82777643|ref|YP_403992.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella dysenteriae Sd197] gi|309785073|ref|ZP_07679706.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1617] gi|81241791|gb|ABB62501.1| ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Shigella dysenteriae Sd197] gi|308927443|gb|EFP72917.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1617] Length = 761 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V +L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPELYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|331653668|ref|ZP_08354669.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] gi|331048517|gb|EGI20593.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] Length = 761 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|317499962|ref|ZP_07958198.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|316898679|gb|EFV20714.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] Length = 761 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 240/786 (30%), Positives = 376/786 (47%), Gaps = 101/786 (12%) Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PN 215 + +E+ + + V S +L E + + + + + ALI ++ L +E P Sbjct: 25 QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGERFDALIKAAAELTSQEAPR 84 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 + + L + ++ + ++ L E+G+ + E+ Sbjct: 85 WEMIAGWLLDFRFSEKLKEEEKSIGISDLYEKIVYL--------TEKGLYGSYIMENYSK 136 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE 334 ++V + + ER+ F Y GL +L RY +E PQ F+ +A+ LA+ E Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196 Query: 335 --KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 + EFY++LS +TPTL N+ QLSSCF+ TVPD L GIF ++ AM Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++KY GG+G + VR G+ I G G + GVI ++++ NDTAVAV+Q G R GAV YL Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV--- 507 + WH D+ EFL LR N GD+R + HD+ A PDLF K +N W L P E+ Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376 Query: 508 --SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 L D +G+E+E Y + A + R + L R ++ ETG P+ +D Sbjct: 377 KGYCLEDSFGEEWERRYWDCVHDARIKK----RTVLLKDLIRLIIKSAAETGTPFAFNRD 432 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNL 602 N +P H G+++ SNLCTEI N S+ E VCNL Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S++L N D + +RT VR LDNVID+N + + AK +NHT+R+IGLG+ G Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L I + S E + D+ E I++ AI AS + A+E+G+Y F+GS W+ G Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESG--- 606 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 W EL+++V GMRN+ +AIAPT++ + I G + I Sbjct: 607 -----------AYFEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 DP V+N + + E K +M+ + + + Sbjct: 656 DP----------------VMNKYFLEEKKG------SMLPRVA---------PDLSPETY 684 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + A ID W + + RQ+ +DQAQS+N Y+ ++ + +++ +Y +AW G+KT Y Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744 Query: 902 YLRSRS 907 Y+RS+S Sbjct: 745 YVRSKS 750 >gi|271499643|ref|YP_003332668.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya dadantii Ech586] gi|270343198|gb|ACZ75963.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya dadantii Ech586] Length = 762 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 197/806 (24%), Positives = 317/806 (39%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVKM-VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + ++ + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDRHLLEDYTEEEFAHMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSSYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YER + +++ A L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFNNQDEFERLYVKYERDDSIRK----KQLKAAELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAISSLHELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS +LA+E+GA F + + QG+ PIDS + Sbjct: 529 VRYSDGSANNLTHQTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPIDSYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 NICSEPL----HYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYETLKNAY-----ELLWDMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D +L A+ GLKT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKFGLKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + L + + Sbjct: 734 TRDGAEDAQDDLLDSAPQDDGCESGA 759 >gi|326782457|ref|YP_004322857.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] gi|310003405|gb|ADO97802.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] Length = 765 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 204/833 (24%), Positives = 339/833 (40%), Gaps = 88/833 (10%) Query: 138 DAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD 197 + ++ +K++ DG N +++ +VE AC GL VS+ V + YDG+ SD Sbjct: 2 EKSMSNGIKVVKRDGVEEPINLEKIHKMVEHACYGLASVSASQVEINSGIQFYDGIKTSD 61 Query: 198 LETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 ++ LI S+ LI PNY V AR LL LR+ V + K + Sbjct: 62 IQEILIRSANDLISLDNPNYQFVAARLLLFGLRKSVYGVSPENHPKVE---------DQL 112 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRI 314 IE GV + L ++ + + + + ++RD F Y GL+ + D+Y +G Sbjct: 113 SGGIESGVYDQSLIKAYSSEEFAEMDSYMDHDRDMLFTYAGLRQVVDKYLVQDRSSGKIY 172 Query: 315 EMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 E PQ +M +A L + + +YN +S TP + T Q +SC Sbjct: 173 ETPQYMYMLIAATLFQKYPQETRLDYVRRYYNAISKHQINIPTPVMAGVRTPLRQFASCV 232 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L V D L IF + G+G + +RG+ + I G + GVIPFLK Sbjct: 233 LVDVDDTLDSIFSSDMAIGYYVAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFE 292 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 T Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R Sbjct: 293 STVRCCTQNGIRGGSATVHFPIWHSEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYER 352 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N +LFSP++V L+D +G + F+ Y +YE + ++A L +L Sbjct: 353 FIANGEISLFSPNDVPGLYDAFGTDAFDACYVDYESDQSVPR----KIVNAQELVLSLLK 408 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL--- 608 ETG ++ D CN S + V+ SNLC EITL + + G I L Sbjct: 409 ERAETGRLYLMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPINHINDDAGEIALCILS 466 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 A D++ + AVR L+ +ID + ++ A++S R++G+G +G L Sbjct: 467 AINVGKLKTLDEMETLCDLAVRGLEELIDYQDYPVDAARRSTLARRSLGIGYIGLAHYLA 526 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + Y++ EA+ + E ++ + AS ++AQE+G F + + GV PIDS Sbjct: 527 KRGLKYSAQEALSEVHDLTEAFQYYLLRASNKIAQEKGPCQDFGRTKYSDGVLPIDSY-- 584 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + D L + WD L+ + T G+R+S A P+ + + + + I+P Sbjct: 585 -KKDVDALVLPEY-NYDWDSLRSDITTYGLRHSTLSAQMPSESSSVVSNATNGIEPPRDY 642 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L +K + G + + LK + Sbjct: 643 LSIKKSKKGPLKQIVPQY--------------------------------NSLKNNYTLL 670 Query: 849 FEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 +++ IE + QK+ DQA S N +E + + + G KT+ Sbjct: 671 WDMESNKGYIEIVAVIQKFFDQAISGNWSYNPEQYPDNEVPVSVMANDFLNTYKYGWKTS 730 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 YY N +L T + +C+ C Sbjct: 731 YY--------------------QNTYDAKKDGDEIETLIQELLETEEEDCDSC 763 >gi|251790601|ref|YP_003005322.1| ribonucleotide-diphosphate reductase subunit alpha [Dickeya zeae Ech1591] gi|247539222|gb|ACT07843.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae Ech1591] Length = 762 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 196/807 (24%), Positives = 315/807 (39%), Gaps = 71/807 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYNHVVKM-VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 R L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 AKYDRHLLEDYTEEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + ++I A L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFNNQDEFERLYVKYEQDDSIRK----QQIKAAELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAISSLHELEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y++ A + + E I ++ + AS +LA+E+GA F + + QG+ PIDS + Sbjct: 529 VRYSNGSANNLTHRTFEAIQYYLLKASNQLAREQGACPWFNETTYSQGILPIDSYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 NICSEPL----HHDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +++ Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQA S N D +L A+ GLKT YY Sbjct: 673 PSNDGYLQLVGLMQKFIDQAISANTNYDPARFPSGKVPMTQLLKDLLTAYKFGLKTLYYQ 732 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + L + + Sbjct: 733 NTRDGAEDAQDDLLDTAAQDDGCESGA 759 >gi|2981919|pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli gi|2981921|pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli gi|2981923|pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli Length = 761 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC +I L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|126174280|ref|YP_001050429.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS155] gi|153000810|ref|YP_001366491.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS185] gi|304408852|ref|ZP_07390473.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS183] gi|307302855|ref|ZP_07582610.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica BA175] gi|125997485|gb|ABN61560.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella baltica OS155] gi|151365428|gb|ABS08428.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS185] gi|304352673|gb|EFM17070.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS183] gi|306913215|gb|EFN43637.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica BA175] Length = 762 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 187/806 (23%), Positives = 324/806 (40%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + + G + + +++ ++ A GL++VS V ++ +DG+ + +I Sbjct: 4 TMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPALYT-----------HVTKLVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + + +L + + + RD F Y ++ L +Y + E Q Sbjct: 113 GKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + K +FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G +PF K + Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ + + + I AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP + SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALN 468 Query: 615 QFDYDKL---ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L Sbjct: 469 LGSIKELSDIEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A E+ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 MKYSDGSANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KICAEPL----HLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KS+ G V + LK ++ + +DG + Sbjct: 645 KSSKDGQLKQVVPDF-DTLKD----SYELLWKMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R S + ++ + + Sbjct: 734 TRDGASDSHDDITNLEKEDDGCAGGA 759 >gi|218548312|ref|YP_002382103.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ATCC 35469] gi|218355853|emb|CAQ88466.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia fergusonii ATCC 35469] Length = 761 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IANEQL----HYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|326561646|gb|EGE11983.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 103P14B1] gi|326573452|gb|EGE23420.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 101P30B1] Length = 758 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ + Sbjct: 5 DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI E P+Y + AR + LR+ A + E Sbjct: 65 IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 +G + + + L + + + RD Y ++ + +Y + E PQ Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ V M L + ++ FY+ S+F+ TP + T Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I G+G + +R LG+ I G + G IPF K+ + Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + + FE Y YE + + RK+ A L+ ML Sbjct: 354 DITLFSPSDVPGLYEAFFANQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L ++ + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +KL+ VR LD ++D + + AKK + R +G+G++ + L Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PID+ Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + Q ++ ++ ++G Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + QK+IDQ+ S N D + K L A+ G+KT YY Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 735 NTRDGADDAQGDLDD 749 >gi|215275535|sp|P0C8H7|RIR1_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit Length = 779 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 216/816 (26%), Positives = 366/816 (44%), Gaps = 85/816 (10%) Query: 180 IVLSETYKNMYDGLSESDLETAL-----------IFSSRTLIEKEPNYAKVTARFLLEKL 228 ++ + + Y DL+ L I L +Y+ + AR + L Sbjct: 5 FIVKKLASDTYGKALNVDLDRLLQAQNKYTLQELISYCSALTILHYDYSTLAARLSVYLL 64 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 + ++ +A + ++++ K + + + + Y Sbjct: 65 HQSTASSF----SEAVSLQAAQSCSRLSPQFVDVVYKYKAI-----------FDSYIDYS 109 Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVA-MGLALKETEKEKRAVEFYNLL 346 RD+ LG++ + + Y L +G +E PQ +MRVA M + K + Y+LL Sbjct: 110 RDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGRVVNMKMILLTYDLL 169 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S ++PT+FN+GT+ PQLSSCFL V D+L ++ ++ +++ GG+G + Sbjct: 170 SRHVITHASPTMFNAGTKKPQLSSCFLLNVNDNLENLYDMVKTAGIISGGGGGIGLCLSG 229 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R + I G+ +S G+ ++ + N + NQGG R GA YLE WH D+ FL + Sbjct: 230 IRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYAVYLELWHQDIFTFLQMP 289 Query: 467 K---NTGDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLY--- 514 + + R ++ W+PDLFM+ + W LFSPD+ +LH ++ Sbjct: 290 RLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDRGDGTWYLFSPDQAPNLHKVFDLE 349 Query: 515 -------GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +EF Y Y E + +A + ++ + + G+P+I FKD Sbjct: 350 RSRHKNAHREFRKLYYQYVA-----EKRYTGVTTAKEIIKEWFKTVIQVGNPYIGFKDAI 404 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSE---ETAVCNLGSINLLAHFANNQFDYDKLAST 624 N +S HVG + +SNLC EIT+ E VCNL ++NL A N +DY L Sbjct: 405 NRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAVNLAAFIRENSYDYRGLIEA 464 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 LDN+ID + E ++SN HR IG+G+ G + + SPEA+ + + Sbjct: 465 AGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGLADVFASFKMKFGSPEAIAMDE 524 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL------LAEVRDELAM 738 + + A+ SVELA+E+G++ SF GS +G+ D E R Sbjct: 525 AIHAALYYGAMRRSVELAKEKGSHPSFPGSAASKGLLQPDLWVRCDDLVFSWEERVAQTT 584 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + G+RN A+ PTAT +N G ++ +P NLY + +SG+ Sbjct: 585 QGVLTPKKWWQLRLAAMQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGE 644 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F V+N +L+++LK+ +LW EA+ L GSI +I IP ++++ + T+ E++ L + Sbjct: 645 FIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTK 704 Query: 859 SASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLK 917 A+ R ++ Q+ SLN Y EP ++ + W GL T +YY +K ++ Sbjct: 705 HAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIR 764 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + +C++D CE C Sbjct: 765 NSE---------------------KACSAD--CEAC 777 >gi|239628851|ref|ZP_04671882.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales bacterium 1_7_47_FAA] gi|239518997|gb|EEQ58863.1| ribonucleoside-diphosphate reductase subunit A [Clostridiales bacterium 1_7_47FAA] Length = 751 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 229/750 (30%), Positives = 362/750 (48%), Gaps = 95/750 (12%) Query: 193 LSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 ++ + ALI S+ L +E P + AR + +EV + + + +++ L Sbjct: 51 MTAEEHMEALIRSAAELTSREAPRWEFAAARLRYCQFEQEVKERLGTLGIASLYDKLKYL 110 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 ++G+ + E+ ++ ++ ER+ F Y GL +L RY + Sbjct: 111 --------TDQGLYGAYILENYSREEIAQAQGFIREERNCLFTYAGLDLLLKRYVIQDRE 162 Query: 312 SR-IEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 +E PQ ++ +A+ LA+KE + + + FY++LS +TPTL N+ + QL Sbjct: 163 RHGLETPQEMYLGIALHLAMKEKKDVRMEWVRRFYDMLSQIKATMATPTLSNARKPYHQL 222 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSCF+ TVPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++ Sbjct: 223 SSCFIDTVPDSLEGIYRSVDNFAQVSKFGGGMGLYFGKVRATGSSIRGFKGAAGGVIRWI 282 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ PDL Sbjct: 283 KLVNDTAVAVDQLGMRQGAAAVYLDAWHKDLPEFLQLRTNNGDDRMKAHDIFPGVCYPDL 342 Query: 489 FMKRVTQ--NAGWTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 F K + + W L P E+ L D YG+E+E Y + + + R + Sbjct: 343 FWKLAEESLDQDWYLMCPHEIEAVKGYCLEDSYGEEWEERYWDCVKDQRISK----RTVL 398 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----- 596 + R +L ETG P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 399 LKDVVRLILKSAVETGTPFAFNRDIVNRANPNSHKGMIYCSNLCTEIAQNMSPVESVSTE 458 Query: 597 ------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 VCNL S+ L + + ++ + TAVR LDNVID+ Sbjct: 459 ILNREGDTVIVNTTRPGDFVVCNLASLCLGNIDVTSDSEVEE---IVSTAVRALDNVIDL 515 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + AK +N +R+IGLG+ G+ L I + S E + AD+ E I++ AI AS Sbjct: 516 NFYPLPYAKVTNARYRSIGLGVSGYHHMLAKHRIRWESEEHLAFADQVFERINYAAIRAS 575 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 L E+G+Y F+GS W G + WD L +V GM Sbjct: 576 SALGAEKGSYEYFEGSQWQSG--------------EYFKKRGYEGGRWDGLAAQVAAQGM 621 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 RN+ MA+APT++ + + G + +DP + +++ + V L Sbjct: 622 RNAWLMAVAPTSSTSILSGTTAGLDPVMKRFFLEEKKNSIMPRVAPEL------------ 669 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 D+ ++ +A+ ID + + +A RQ+ IDQAQS+NLY+ Sbjct: 670 ----DISTF---------------WLYKSAYTIDQTYTVRAAGVRQRHIDQAQSVNLYIT 710 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +E + ++L +Y AW G+KT YY+RS+S Sbjct: 711 NEYTMRQLLNLYILAWEQGVKTIYYVRSQS 740 >gi|296113066|ref|YP_003627004.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella catarrhalis RH4] gi|295920760|gb|ADG61111.1| ribonucleoside-diphosphate reductase alpha subunit [Moraxella catarrhalis RH4] gi|326562609|gb|EGE12920.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 46P47B1] gi|326577114|gb|EGE27008.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis O35E] Length = 758 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ + Sbjct: 5 DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI E P+Y + AR + LR+ A + E Sbjct: 65 IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 +G + + + L + + + RD Y ++ + +Y + E PQ Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ V M L + ++ FY+ S+F+ TP + T Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I G+G + +R LG+ I G + G IPF K+ + Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + + FE Y YE + + RK+ A L+ ML Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L ++ + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +KL+ VR LD ++D + + AKK + R +G+G++ + L Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PID+ Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + Q ++ ++ ++G Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + QK+IDQ+ S N D + K L A+ G+KT YY Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 735 NTRDGADDAQGDLDD 749 >gi|294637128|ref|ZP_06715437.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda ATCC 23685] gi|291089662|gb|EFE22223.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda ATCC 23685] Length = 760 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 199/806 (24%), Positives = 316/806 (39%), Gaps = 71/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY R +E Sbjct: 64 KAAADLISRETPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDHVV-RLVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDRHLLEDFSRDEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ Q Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + RKI AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQNEFERLYVQYEQDSRIR----QRKIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC E+ L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEVALPTKPLEDVNDESGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS +LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANALTHRTFEAIQYYLLKASHQLAREQGACPWFNETRYAQGILPIDNYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AICAEPL----HYDWETLRADIVRDGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ L +DG + Sbjct: 645 KASKDGILRQVVPEYERLQEAY-----ELLWSLPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K+L A+ +G+KT YY Sbjct: 681 -------LVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R E + + + Sbjct: 734 TRD--GAEDAQEDLGSTQDDGCESGA 757 >gi|307626228|gb|ADN70532.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UM146] Length = 761 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNPTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|260913957|ref|ZP_05920431.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] gi|260632044|gb|EEX50221.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] Length = 756 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 318/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG L + ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 4 ALMVTKRDGHLEPIDLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI KE P+Y + AR + LR++ LY E+ + + Sbjct: 64 KAAADLISKESPDYQYLAARLAVFHLRKKAYGHFDPP----------RLY-EHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDASLLTDYCREEWDEMDTYLDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAASLFSKYPQETRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRALGSQIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ + A Sbjct: 293 SQGGVRGGAATVFYPIWHLEAESLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGAD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQTKFEELYLKYEQDPTIRK----RAVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLQHFHDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L S AVR LD ++D + + AK+S+ R++G+G++ + L Sbjct: 469 LGKLENLDELESLADLAVRALDALLDYQDYPVRAAKRSSLGRRSLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I ++ + AS+ LA+E G F + + +G+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQYYLLKASMNLAKEIGPCEYFNETTYAKGILPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 ----TLTQEPLHYDWETLRKEIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ +L +DG + Sbjct: 645 KASKDGILKQVVPEYETLGE-----NYELLWELPNNDGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPQRFEDGKVPMKRLLGDLLTAYKYGLKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|255928975|ref|YP_003097287.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4] gi|255705261|emb|CAR63250.1| ribonucleotide reductase A subunit [Synechococcus phage S-RSM4] Length = 772 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 202/831 (24%), Positives = 336/831 (40%), Gaps = 89/831 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K+ G + + N ++ +VEEAC GL VS+ V + +DG+ D++ L+ Sbjct: 7 IKVKKRSGAVEALNLDKIHKMVEEACEGLGSGVSASQVEMNSGLQFFDGIETKDIQEILV 66 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + PNY V AR LL +R++V + + E+ + + + Sbjct: 67 RSASDLISLDTPNYQFVAARLLLFAVRKQVFGAGWVNGHPSVF--------EHATKCVSK 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + + + + + ++RD F Y GL+ + D+Y +G E PQ Sbjct: 119 GVYDGDILGKYSLEEWSKINSWIDHDRDMLFTYAGLRQVVDKYLVQDRSSGEMYETPQYM 178 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M +A+ L + + +YN +S TP + T Q +SC L D Sbjct: 179 YMMIAVTLFQNYPTETRLEYVKRYYNAISKHKINIPTPIMAGVRTPLRQFASCVLVDSDD 238 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF + G+G + +RG+ A I G + GVIPFLK T Sbjct: 239 TLDSIFTSDMAIGRYVAQRAGIGINAGRIRGINAKIRGGEVQHTGVIPFLKKFEATVRCC 298 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF +R N Sbjct: 299 TQNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYERFINNEE 358 Query: 499 WTLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 +LFSP +V L+D +G F+ Y YE D R+I A L +L ETG Sbjct: 359 ISLFSPHDVPGLYDAFGTPGFDDLYRAYEFDPDVP----QRRIGAQELLLALLKERAETG 414 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-------EETAVCNLGSINLLAH 610 +I D CN S V+ SNLC EITL + E A+C L +IN+ Sbjct: 415 RVYIMNIDHCNEHSSFTDK--VNMSNLCQEITLPTDPLQHIDGDGEIALCILSAINVGKI 472 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D L + AVR L+ +ID + + A+ S R++G+G +G L Sbjct: 473 NK-----LDDLENLCDLAVRGLEELIDYQDYPVRAAELSTLNRRSLGIGYIGLAHYLAKH 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y P A ++ + E ++ + +S +A+E+G F + + QG+ PID+ Sbjct: 528 GEHYDDPAAWKLVHDLSESFQYYLLKSSNTVAKEKGKCGYFDRTKYAQGILPIDTYKRDI 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + R W+ L+ + T G+R+S A P+ + + + + I+P + Sbjct: 588 DEFCGTEL----RHDWESLRTSITTHGLRHSTLSAQMPSESSSVVSNATNGIEPPRAYMS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK + G + GS LK + ++ Sbjct: 644 VKKSKKGPLKQIVP----------------------QYGS----------LKNNYTLLWD 671 Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 + D I+ + QK+ DQA S N +E + + + G KT+YY Sbjct: 672 MKDNDGYIKVVAAMQKFFDQAISGNWSYNPENYDNNEVPVSVMAGDLLKTYKYGWKTSYY 731 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T + + I T + +C+ C Sbjct: 732 ----------QNTYDIKSDEPQLTEERKESIEDLLNQILE--TEEEDCDSC 770 >gi|326575650|gb|EGE25573.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis CO72] Length = 758 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ + Sbjct: 5 DTIKVTKRDGRLEPINLDKIHRVIAWAAKDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI E P+Y + AR + LR+ A + E Sbjct: 65 IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 +G + + + L + + + RD Y ++ + +Y + E PQ Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ V M L + ++ FY+ S+F+ TP + T Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I G+G + +R LG+ I G + G IPF K+ + Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + + FE Y YE + + RK+ A L+ ML Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L ++ + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +KL+ VR LD ++D + + AKK + R +G+G++ + L Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PID+ Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTKYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + Q ++ ++ ++G Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + QK+IDQ+ S N D + K L A+ G+KT YY Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 735 NTRDGADDAQGDLDD 749 >gi|262043284|ref|ZP_06016415.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039383|gb|EEW40523.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 761 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 200/782 (25%), Positives = 317/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGTTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E+ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA----------LYDHVVKM-VEK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + L + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDHHLLEDYTEEEFQQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGTDANRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFS +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 353 ITLFSLSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLEDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + ++ W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 586 DLDGI-VSDPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPDYENL-----QNAYELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLNAYKFGVKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|2981911|pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli gi|2981913|pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli gi|2981915|pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli Length = 761 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC I L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|2981928|pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli gi|2981930|pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli gi|2981932|pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli Length = 761 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC +I L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|197285593|ref|YP_002151465.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus mirabilis HI4320] gi|227356094|ref|ZP_03840484.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus mirabilis ATCC 29906] gi|194683080|emb|CAR43610.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus mirabilis HI4320] gi|227163739|gb|EEI48651.1| ribonucleoside-diphosphate reductase 1 alpha chain [Proteus mirabilis ATCC 29906] Length = 763 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 193/802 (24%), Positives = 316/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL++VS V + YDG+ +D+ L+ Sbjct: 4 SLLVTKRDGHKERIDLDKIHRVITWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLV 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ ++ +E Sbjct: 64 KAAADLISGETPDYQYLAARLAVFNLRKKAYGQFEPPAL-----------YDHVKHLVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G R L E + + + ++RD F Y ++ L +YF I G E Q Sbjct: 113 GKYDRHLLEDYTKEEFEQMDKFIVHQRDMNFSYAAVKQLEGKYFVQNRITGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FYN +S+F TP + T Q SSC L D Sbjct: 173 YVLVAACLFSRYPKETRMDYIERFYNAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKGQD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEKD----KSIRQKQVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D L R AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIENLDDLEELARLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPIDTY----K 584 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ N W+ L+K +K G+RNS A+ P+ T + I + I+P + + Sbjct: 585 KSLDVLTNEPLHYDWESLRKEIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ + +G + Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWQMPSIEGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQGDLEEVVETADSD 755 >gi|257454183|ref|ZP_05619453.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter aerosaccus SK60] gi|257448356|gb|EEV23329.1| ribonucleoside-diphosphate reductase, alpha subunit [Enhydrobacter aerosaccus SK60] Length = 762 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 75/795 (9%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG L + ++ ++E A GL +VS V ++ YD ++ + + Sbjct: 5 EDILVQKRDGRLEKIDLDKIHRVIEWAAEGLDNVSVSQVEISSHIQFYDKITTKSIHETI 64 Query: 203 IFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI P+Y + AR + LR+ ++ + + Sbjct: 65 IKSAADLISAATPDYQYLAARLAIFHLRKIAFGQFEPPHL-----------FDHVTKLTQ 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 EG + + + L + + + RD +F Y ++ + +Y + E PQ Sbjct: 114 EGRYDAHILQDFSKEEFDILNDYIDHNRDLSFAYAAVKQMEGKYLVQDRVTKQVFESPQF 173 Query: 320 FFMRVAMGLA------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +M V M L + + FY+ S+F TP + T Q SSC L Sbjct: 174 LYMLVGMCLFASYDKQYDKAARLDYIKRFYDTTSTFKISLPTPIMSGVRTPSRQFSSCVL 233 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 234 IECDDSLDSINATTSAIVRYVSQRAGIGVNAGRIRALGSPIRGGEAQHTGCIPFYKLFQT 293 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 +QGG R GA + WH++VE L L+ N G + R M+ I +R+ Sbjct: 294 AVKCCSQGGVRGGAATLFYPIWHLEVENLLVLKNNRGVEDNRVRHMDYGVQINKTIYQRL 353 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +N TLFSP +V L+D + EFE YE YE+ E R + A L+ M+ Sbjct: 354 IKNQNVTLFSPSDVPGLYDAFFADQAEFERLYEQYEQD----ESIRKRSVPAQELFSLMM 409 Query: 551 TMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 TG ++ D CN SP V + SNLC EI L + + G I L Sbjct: 410 QERASTGRIYVQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTQPLDNINDESGEIALCT 469 Query: 610 ---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + + VR LD ++D + + AK + R +G+G++ + Sbjct: 470 LSGINLGEINQLEDIKEPAELIVRALDALLDYQDYPVIAAKNGSMKRRTLGIGVINYAYY 529 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L Y+ P A+ + + E + ++ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 530 LAKNGTKYSDPTALGLTHRTFEALQYYLLVASNKLAKEQGACPAFGDTTYSQGILPIDTY 589 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + N +L W+ L+ +KT G+RNS A+ P+ T + I + I+P Sbjct: 590 KADIDAI----CNEPLQLDWESLRHDIKTHGLRNSTLTALMPSETSSQIANATNGIEPPR 645 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + VK++ G V + D LK + Sbjct: 646 GLVSVKASKDGILKQVVPEI--------------------------------DKLKDQYE 673 Query: 847 TAFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLK 898 +++ + + + QK+IDQ+ S N D + + A+ +G+K Sbjct: 674 LLWQMPNNKGYLSLVAIMQKFIDQSISANTNYDPTKFEDSRVPMKVMIQDLLMAYKLGVK 733 Query: 899 TTYYLRSRSATSVEK 913 T YY +R + + Sbjct: 734 TLYYHNTRDGANDAQ 748 >gi|226327850|ref|ZP_03803368.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198] gi|225203554|gb|EEG85908.1| hypothetical protein PROPEN_01731 [Proteus penneri ATCC 35198] Length = 763 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 191/802 (23%), Positives = 316/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL++VS V + YDG+ +D+ L+ Sbjct: 4 SLLVTKRDGHKERIDLDKIHRVIAWAAEGLENVSVSQVELRSQIQFYDGIKTADIHETLV 63 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI P+Y + AR + LR++ ++ + ++ Sbjct: 64 KAAADLISGDTPDYQYLAARLAVFNLRKKAYGQFEPPKL-----------YDHVKKLVDL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAF 320 G R L E + + N + ++RD F Y ++ L +YF I G E Q Sbjct: 113 GKYDRHLLEDYTQEEFEQMDNFIVHQRDMNFSYAAVKQLEGKYFVQNRITGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FYN +S+F TP + T Q SSC L D Sbjct: 173 YVLVAACLFSRYPQATRMDYIERFYNAISTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYERLIKGQD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEKD----KSIRQKQVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNDIKDPNGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D L R AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIENLDDLEELARLAVRSLDALLDYQDYPILAAKQGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHRAFEAIQYYLLKASNELAKEQGACPWFNETTYAEGILPIDTY----K 584 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ W+ L+K +K G+RNS A+ P+ T + I + I+P + + Sbjct: 585 KSLDVLTKEPLHYDWEGLRKDIKEHGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ + +G + Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWQMPSIEGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPTRFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGADDVQGDLEEVVETEDSD 755 >gi|168749637|ref|ZP_02774659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168754981|ref|ZP_02779988.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168767854|ref|ZP_02792861.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168773048|ref|ZP_02798055.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168780083|ref|ZP_02805090.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168798398|ref|ZP_02823405.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|195935608|ref|ZP_03080990.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208806525|ref|ZP_03248862.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208814448|ref|ZP_03255777.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208820413|ref|ZP_03260733.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209398582|ref|YP_002271640.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|254794125|ref|YP_003078962.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|187771171|gb|EDU35015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188016054|gb|EDU54176.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|189002029|gb|EDU71015.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189357729|gb|EDU76148.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189362988|gb|EDU81407.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189378969|gb|EDU97385.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|208726326|gb|EDZ75927.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208735725|gb|EDZ84412.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208740536|gb|EDZ88218.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209159982|gb|ACI37415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209765532|gb|ACI81078.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|209765536|gb|ACI81080.1| ribonucleoside diphosphate reductase 1 alpha subunit [Escherichia coli] gi|254593525|gb|ACT72886.1| ribonucleoside diphosphate reductase 1, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|326339581|gb|EGD63392.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1125] Length = 761 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 194/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKHFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|160875519|ref|YP_001554835.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS195] gi|160861041|gb|ABX49575.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS195] gi|315267706|gb|ADT94559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS678] Length = 762 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 188/806 (23%), Positives = 324/806 (40%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + + G + + +++ ++ A GL++VS V ++ +DG+ + +I Sbjct: 4 TMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPALYT-----------HVTKLVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + + +L + + + RD F Y ++ L +Y + E Q Sbjct: 113 GKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + K +FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G +PF K + Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ + + + I AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSSIRK----KTIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP + SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALN 468 Query: 615 QFDYDKL---ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L Sbjct: 469 LGSIKELSDIEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A E+ + E I F+ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 MKYSDGSANELTHRTFEAIQFYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KICAEPL----HLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KS+ G V + LK ++ + +DG + Sbjct: 645 KSSKDGQLKQVVPDF-DTLKD----SYELLWKMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R S + ++ + + Sbjct: 734 TRDGASDSHDDITNLEKEDDGCAGGA 759 >gi|332534564|ref|ZP_08410399.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035984|gb|EGI72463.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 760 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 194/790 (24%), Positives = 313/790 (39%), Gaps = 71/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKEPLDLDKIHRVIEWAAEGLNNVSVSQVELKSHIQFYDGIRTKDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ ++ + + + Sbjct: 64 KAAADQISKESPDYQYLAARLAVFHLRKKAYGQFEPPRL-----------FDHVTKMVGD 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 L + +L L L + RD F Y ++ L +Y ++G E Q Sbjct: 113 KRYDAHLLVDYTEQELDELDAYLDHSRDLNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S F TP + T Q SSC L D Sbjct: 173 YILVAASLFSDYPRETRTDYIKRFYDAVSLFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+HI G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSHIRNGEAYHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R ++ L R+ ++ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKLMYSRLIKDDY 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EF+ Y YE+ E ++I A+ L+ Sbjct: 353 ITLFSPSDVPGLYDAFFEDQAEFDALYVKYEQD----ESIRKKRIKAIELFSMFAQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYLQNVDHCNTHSPFISKVAPIRQSNLCLEIALPTKPLNNVNDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LDN++D + + AK + R +G+G++ + L Sbjct: 469 LGAIESLDELEELAELAVRALDNLLDFQDYPVPAAKNATMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ P D+ + Sbjct: 529 KRYSDGSANALTHKTFEAIQYYLMKASNELAKERGACPKFNETTYSQGIMPTDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L WD L+ +K GMRNS A+ P+ T + I + I+P ++ V Sbjct: 589 KI----CDEPLHLDWDTLRASIKEHGMRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYER-LKDQ----YELLWDIPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY-- 902 QK++DQ S N D + + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQTISANTNYDPNKFEGGKVPMQVLLKDLLSAYKLGVKTLYYHN 733 Query: 903 LRSRSATSVE 912 R ++ S E Sbjct: 734 TRDGASDSQE 743 >gi|300717618|ref|YP_003742421.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia billingiae Eb661] gi|299063454|emb|CAX60574.1| Ribonucleoside-diphosphate reductase alpha chain [Erwinia billingiae Eb661] Length = 761 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 200/782 (25%), Positives = 316/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GLQ+VS V ++ Y+G+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYEGIRTSDIHETVI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ LY + R ++ Sbjct: 64 KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDQ-VKRMVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G R L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDRHLLEDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRDTRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYENEPSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLLDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ + L Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPIPAAQRGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A ++ + E I F+ + AS ELA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANDLTHRTFEAIQFYLLKASNELAKEQGACPWFNETTYAQGIMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L WD L++++KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AISSEPL----HLDWDGLREQIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERL-----KDSYELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D K+L A+ G+KT YY Sbjct: 681 -------LVGLMQKFIDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|163748932|ref|ZP_02156183.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella benthica KT99] gi|161331308|gb|EDQ02196.1| ribonucleotide-diphosphate reductase alpha subunit [Shewanella benthica KT99] Length = 762 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 192/830 (23%), Positives = 326/830 (39%), Gaps = 95/830 (11%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ G + + +++ ++ A L++VS V ++ +DG+ + +I Sbjct: 5 MKVTKRSGKRENIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ LY ++ G Sbjct: 65 AAADLISLEAPDYQFLSARLAIFHLRKKAFGQFEPPA----------LYDHVVK-LVKAG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + E +L L + + RD +F Y ++ L +Y + E Q + Sbjct: 114 KYDKHILEDYSREELDILDTYVDHWRDMSFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGGMI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EFE Y YE A + +I A L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFADQDEFERLYLQYEADASVRKT----QIKATELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP + SNLC EI L + G I L A N Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L AVR LD+++D + I+ A+KS+ R +G+G++ F L + Sbjct: 470 GAIKDLSELEPLADLAVRALDSLLDYQDYPIKAARKSSMNRRTLGIGVINFAYYLAKEGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A I + E I ++ + AS+ LA+E GA SF + + +G+ PID+ + Sbjct: 530 RYSDGSANNITHRTFEAIQYYLLKASMNLAKEHGACPSFHETTYSKGILPIDTYKRSLDK 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + W+ L++ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 I----CDEPLHMDWETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 S+ G V ++ + +DG + Sbjct: 646 SSKDGQLKQVVPDFEK-----YQHSYELLWQMPNNDGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N ++ + L A+ +GLKT YY Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPGRFEGNKVPMQVLLKDLLNAYKLGLKTLYY--- 731 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953 +T G +++++ + D +CE C Sbjct: 732 -------HNTRDGASDQMDSIISVEKE--------------DEDCEGGAC 760 >gi|322514735|ref|ZP_08067761.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] gi|322119330|gb|EFX91446.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] Length = 756 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 187/800 (23%), Positives = 308/800 (38%), Gaps = 73/800 (9%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L + G F+ ++ ++ A GLQ+VS V + Y G+ +D+ Sbjct: 2 QKTLMVTKRSGQQEPFDLDKIHRVITWAAEGLQNVSLSQVELSAHIQFYQGIRTADIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI E P+Y + AR + LR++ + + + Sbjct: 62 IIKAAADLISTETPDYQYLAARLAMFHLRKKAYGDFTPPHLFT-----------HIKKLV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 G + L + + + L + RD F Y ++ L +Y + G E Q Sbjct: 111 ALGKYDQALLTDYTEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ VA L + + FY+ SSF TP + T Q SSC L Sbjct: 171 FLYLLVAACLFSKYPKATRLDYVKRFYDATSSFKISLPTPIMSGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQSAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVYYPLWHLEVESLLVLKNNRGIEDNRCRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + +FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVDGLYEAFFAEQDKFEQLYLQYEQDPTIRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 TG +I D CN V + SNLC EI L + G I L Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+ VR LD ++D + +E AK + R++G+G++ + L Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVEAAKHAALARRSLGIGVINYAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ PID+ Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDNYKKE 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ ++ G+RNS ++ P+ T + I + I+P + Sbjct: 587 LDN----LTQEPLHYDWESLRAEIQQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 VK++ G V + L+ + + Sbjct: 643 SVKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670 Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901 +I D ++ QK+IDQA S N D + K+L A+ GLKT Y Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730 Query: 902 YLRSRSATSVEKSTLKGVDG 921 Y +R E S DG Sbjct: 731 YQNTRD--GAEDSQQDLNDG 748 Score = 39.1 bits (89), Expect = 3.7, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 K + V KR+G FD KI R I A V S +Q T + Sbjct: 3 KTLMVTKRSGQQEPFDLDKIHRVITWAAEGLQNVSLSQVELSAHIQFYQGIRTADIHETI 62 Query: 84 LQ 85 ++ Sbjct: 63 IK 64 >gi|51595598|ref|YP_069789.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|51588880|emb|CAH20494.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pseudotuberculosis IP 32953] Length = 762 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 192/806 (23%), Positives = 316/806 (39%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPTLFAHVSKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSGYPRESRLDYIKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----SNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + ++ + Sbjct: 734 TRDGADDVQEDIQSSLPGDDDCEGGA 759 >gi|22126851|ref|NP_670274.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis KIM 10] gi|45440762|ref|NP_992301.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|108806925|ref|YP_650841.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Antiqua] gi|108812923|ref|YP_648690.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Nepal516] gi|145599748|ref|YP_001163824.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Pestoides F] gi|149366795|ref|ZP_01888829.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis CA88-4125] gi|153949921|ref|YP_001401733.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|162420851|ref|YP_001605846.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Angola] gi|165924688|ref|ZP_02220520.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938388|ref|ZP_02226946.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009893|ref|ZP_02230791.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211738|ref|ZP_02237773.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400331|ref|ZP_02305844.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419736|ref|ZP_02311489.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423852|ref|ZP_02315605.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025072|ref|YP_001721577.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis YPIII] gi|186894661|ref|YP_001871773.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|218928373|ref|YP_002346248.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis CO92] gi|229841158|ref|ZP_04461317.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843263|ref|ZP_04463409.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229894121|ref|ZP_04509307.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Pestoides A] gi|229903353|ref|ZP_04518466.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Nepal516] gi|270487163|ref|ZP_06204237.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294503228|ref|YP_003567290.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|21959883|gb|AAM86525.1|AE013899_2 ribonucleoside diphosphate reductase 1, alpha subunit, B1 [Yersinia pestis KIM 10] gi|45435620|gb|AAS61178.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Microtus str. 91001] gi|108776571|gb|ABG19090.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Nepal516] gi|108778838|gb|ABG12896.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Antiqua] gi|115346984|emb|CAL19875.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis CO92] gi|145211444|gb|ABP40851.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Pestoides F] gi|149291169|gb|EDM41244.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis CA88-4125] gi|152961416|gb|ABS48877.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis IP 31758] gi|162353666|gb|ABX87614.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis Angola] gi|165913766|gb|EDR32385.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923748|gb|EDR40880.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991289|gb|EDR43590.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207509|gb|EDR51989.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962477|gb|EDR58498.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050280|gb|EDR61688.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056701|gb|EDR66464.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751606|gb|ACA69124.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis YPIII] gi|186697687|gb|ACC88316.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis PB1/+] gi|229679123|gb|EEO75226.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Nepal516] gi|229689610|gb|EEO81671.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697524|gb|EEO87571.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704006|gb|EEO91019.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis Pestoides A] gi|262361267|gb|ACY57988.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D106004] gi|262365196|gb|ACY61753.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D182038] gi|270335667|gb|EFA46444.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294353687|gb|ADE64028.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|320015944|gb|ADV99515.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 762 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 192/806 (23%), Positives = 316/806 (39%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPTLFAHVSKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSGYPRETRLDYIKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAILAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----SNEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + ++ + Sbjct: 734 TRDGADDVQEDIQSSLPGDDDCEGGA 759 >gi|157961885|ref|YP_001501919.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella pealeana ATCC 700345] gi|157846885|gb|ABV87384.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella pealeana ATCC 700345] Length = 762 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 195/810 (24%), Positives = 333/810 (41%), Gaps = 79/810 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + + ++ ++E A GL +VS V ++ +DG++ + +I Sbjct: 5 MTVTKRSGERETIDLDKIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ LY IE G Sbjct: 65 AAADLISPESPDYQFLSARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LIELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + E ++ L + + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDQHILEDYSQEEIDTLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + + +FY+ S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFAKYPKETRLQYVKDFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G D R ++ I + +R+ Q Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKVMYQRLIQGGMI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V ++D + +EFE Y YE + ++I AV L+ M+ T Sbjct: 354 SLFSPSDVPGMYDAFFEDQEEFERLYLKYEADDSIRK----KQIKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN SP V SNLC EI L + E A+C L ++NL Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A ++L AVR LDN++D + I A+K++ R +G+G++ F + L Sbjct: 470 GAIKK-----LEELEPLADLAVRALDNLLDYQDYPIISAQKASMNRRTLGIGVINFANYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A I ++ E I F+ + AS++LA+E+GA +F + + +G+ PID+ Sbjct: 525 AKEGVRYSDGSANGITHKTFEAIQFYLLKASMKLAKEQGACPAFHETTYSKGILPIDTYK 584 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + L W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 585 RDLDKI----CDEPLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VK++ G V + ++ + +DG + Sbjct: 641 LISVKASKDGQLKQVVPDFEK-----YQYSYELLWQMPNNDGYLQ--------------- 680 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTT 900 QK++DQ+ S N D K L A+ G+KT Sbjct: 681 -----------LVGLMQKFVDQSISANTNYDPSRFEGGRVPMKVLLKDLLTAYKYGVKTL 729 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 YY +R S + ++ + ++ Sbjct: 730 YYHNTRDGASDSHDDITAIEKEDDSCAGGA 759 >gi|58532962|ref|YP_195185.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] gi|58331429|emb|CAF34215.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] Length = 776 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 202/831 (24%), Positives = 333/831 (40%), Gaps = 74/831 (8%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL 198 + + DG++ N +++ +VEEAC L VS+ V + +DG++ ++ Sbjct: 2 EESMTTINVKKRDGSIEPLNLEKVHKMVEEACEDLAGVSASQVEMHSGIQFHDGITTENI 61 Query: 199 ETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + LI S+ LI PNY V AR LL LR++V + M Y Sbjct: 62 QEILIRSASDLISLDNPNYQYVAARLLLFGLRKQVFN------KNVWKDGMPSAYDVALY 115 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIE 315 V L + D D V + N + ++RD+ F Y GL+ + D+Y +G E Sbjct: 116 NVTINKVYDEDLLDKYSDEDWVKVNNMIDHDRDYLFTYAGLRQVVDKYLVQDRSSGEIYE 175 Query: 316 MPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 PQ ++ +AM L +++ +YN +S TP + T Q +SC L Sbjct: 176 TPQYMYLFIAMTLFADYPISQRLDYVRRYYNAISKHKINIPTPIMAGVRTTLRQFASCVL 235 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L IF + G+G + +RG+ + I G K GVIPFLK Sbjct: 236 IDSDDTLDSIFTSDMAIGKYVAQRAGIGINAGRIRGVNSKIRGGEVKHTGVIPFLKKFEA 295 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 T Q G R G+ + WH ++E+ + L+ N G + R ++ + I LF +R Sbjct: 296 TVRCCTQNGIRGGSATVHFPIWHQEIEDIIVLKNNKGTEDNRVRKLDYSIQISKLFYERF 355 Query: 494 TQNAGWTLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 N +LFSP +V L+D +G F+ Y YER + I A L+ +L Sbjct: 356 ISNGEISLFSPHDVPGLYDAFGTDRFDELYVGYERDTSVPR----KTIGAQELFLDLLKE 411 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--LGSINLLAH 610 ETG ++ D CN S + V+ SNLC EITL + N + L A Sbjct: 412 RAETGRVYVMNIDHCNSHSSFKDK--VNMSNLCQEITLPTDPLHQIDGNGEIALCILSAI 469 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 A + D+L AVR L+ +ID + ++ A+ S R++G+G +G L Sbjct: 470 NAGKLKNLDELEELCDLAVRGLEELIDYQNYPVKAAEVSTKNRRSLGIGYIGLAHYLAKQ 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y P+A ++ E E F+ + +S E+A+E+GA F + + G+ PID+ Sbjct: 530 GVKYDDPQAWQLVHELTESFQFYLLKSSNEIAKEKGACGYFDRTKYSDGILPIDTYKSDV 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + W+ L+ ++T G+R+S A P+ + + + + I+P L Sbjct: 590 DEI----VPNKLNHDWETLRSEIRTFGLRHSTLSAQMPSESSSVVSNETNGIEPPRDYLS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK + G + LK + ++ Sbjct: 646 VKKSKKGPLKQIVPQY--------------------------------QTLKNNYTLLWD 673 Query: 851 IDPM-WLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 + I + QK+ DQA S N +E + + G KT+YY Sbjct: 674 MPNNTGYINVVAVMQKFFDQAISGNWSYNPENYPNNEVPVSVMAGDLLNTYKYGWKTSYY 733 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++T + I ++ T + C+ C Sbjct: 734 ----------QNTYDSKTDDFEDKQEEKKSLEDLLNDILNTNTQEESCDSC 774 >gi|54309623|ref|YP_130643.1| ribonucleotide-diphosphate reductase subunit alpha [Photobacterium profundum SS9] gi|46914061|emb|CAG20841.1| putative ribonucleoside-diphosphate reductase,alpha subunit [Photobacterium profundum SS9] Length = 753 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 187/800 (23%), Positives = 314/800 (39%), Gaps = 70/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++ A GL +VS V +++ YDG+ +D+ +I Sbjct: 4 QLTVTKRDGRQETIELDKIHRVINWAAEGLTNVSVSQVELKSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ A + + + Sbjct: 64 KAAADLISEESPDYQYLAARLAIFNLRKKAYGQFEPPTLFA-----------HVTNLVNK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDSHLLEDYTAEEFATMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIFESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILIAACLFGKYPKETRLSYIKRFYDAASTFKISLPTPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K Sbjct: 233 SLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRDGEAFHTGCIPFYKYFQTAVKCC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ + L R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHREVESLLVLKNNRGVEENRVRHMDYGVQLNKLMYTRLIKGQN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ A + I A+ L+ ++ Sbjct: 353 ISLFSPSDVPGLYDAFFADQDEFERLYVKYEQDASIKK----ESIKAIELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPLNNVEDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L VR LD ++D + + A++S R +G+G++ + L Sbjct: 469 LGAIETLDDLEELADLTVRALDALLDYQDYPLPAARRSTMNRRTLGVGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A I ++ E I ++ + ASV LA+E+GA +F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNITHQTFEAIQYYLLKASVGLAKEQGACPAFHETTYSKGILPIDTYKKAID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L++ +KT G+RNS A+ P+ T + I + I+P + V Sbjct: 589 DVCSEEL----HYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILKQVVPEYSK-----YKDNYELLWNIGSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPSKQANGKVPMTLLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVDGKL 923 +R A+ + V K+ Sbjct: 734 TRDGASDAQDDAEDCVSCKI 753 >gi|217973231|ref|YP_002357982.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella baltica OS223] gi|217498366|gb|ACK46559.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella baltica OS223] Length = 762 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 187/806 (23%), Positives = 324/806 (40%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + + G + + +++ ++ A GL++VS V ++ +DG+ + +I Sbjct: 4 TMTVTKRCGDRENIDLEKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISPESPDYQFLAARLAVFHLRKKAFGQFEPPALYT-----------HVTKLVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + + +L + + + RD F Y ++ L +Y + E Q Sbjct: 113 GKYDMHILQDYSREELDVMDTYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + K +FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFARYPKETRLKYVKDFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G +PF K + Sbjct: 233 SLDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKVMYQRLIKGEN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE+ + + + I AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFEDQNEFERLYVQYEQDSCIRK----KTIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP + SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALN 468 Query: 615 QFDYDKL---ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 +L AVR LDN++D + I+ A+ ++ R +G+G++ F + L Sbjct: 469 LGSIKELSDIEPLADLAVRALDNLLDYQDYPIKAAQIASMNRRTLGIGVINFANYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A E+ + E I ++ + AS+ LA+E+GA F + + QG+ PID+ + Sbjct: 529 MKYSDGSANELTHRTFEAIQYYLLKASMNLAKEQGACPLFHETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + V Sbjct: 589 KICAEPL----HLDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KS+ G V + LK ++ + +DG + Sbjct: 645 KSSKDGQLKQVVPDF-DTLKD----SYELLWKMPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + + L A+ +G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLNAYKLGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R S + ++ + + Sbjct: 734 TRDGASDSHDDITNLEKEDDGCAGGA 759 >gi|90409250|ref|ZP_01217355.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas sp. CNPT3] gi|90309648|gb|EAS37828.1| ribonucleotide-diphosphate reductase alpha subunit [Psychromonas sp. CNPT3] Length = 757 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 201/796 (25%), Positives = 325/796 (40%), Gaps = 69/796 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+ + +G+ + +++ ++ A GL++VS + ++ YDG+ +D+ +I Sbjct: 4 KIFVTKRNGSTECLDLEKIHRVITWASEGLENVSVSQIELNSHIQFYDGIRTNDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + A + LR++ E+ + + + Sbjct: 64 KAAADLISEDSPDYQYLAAHLAIFHLRKKAYRRFTPPSV-----------FEHVSKMVSK 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + ++RD F Y ++ L +Y + G E PQ Sbjct: 113 GKYDAHLLEDYTKKEFEKMEKFIDHKRDLTFSYAAVKQLEGKYLVQNRVTGEIYESPQFL 172 Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YLLVAACLFSNYDKKIRLDYVQRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIEADD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I A G+G + +R LG+HI G G IPF K + Sbjct: 233 SLDSINAAASSIVKYVSQRAGIGINAGRIRALGSHIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R ++ + LF +R+ Sbjct: 293 SQGGVRGGAATIFYPLWHLEVESLLVLKNNRGIDSNRVRHLDYGVQLSRLFYQRLIDKKD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + ISAV L+ ++ Sbjct: 353 ITLFSPSDVPGLYDAFFEDQDEFERLYTLYEGD----DSIRQNSISAVNLFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP + SNLC EI L + + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLRHIMDEEGEIALCTLSALN 468 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LDN++D + I AK S+ R +G+G++ + L Sbjct: 469 LGAIKSLDELEPLSELAVRALDNLLDYQDYPIIAAKNSSMARRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I F+ + AS +LA+ERGA F + + QG+ PID+ + Sbjct: 529 VKYSDGSANNLTHRTFEAIQFYLLKASNKLAKERGACPKFNETRYSQGILPIDTYKKSID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L W+ L+K + G+RNS A+ P+ T + I + I+P + + Sbjct: 589 SI----CDEKYHLDWETLRKDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGFISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ D+ + G Sbjct: 645 KASKDGILKQVVPEFEKYRE-----NYELLWDIPNNKG---------------------- 677 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 I QK+IDQA S N ++ S L A+ MGLKT YY Sbjct: 678 ----YINLVGIMQKFIDQAISANTNYDPKRFPNEKVSMTTLLGDLLTAYKMGLKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVD 920 +R S E + D Sbjct: 734 TRDGASDENVIAETDD 749 >gi|293415527|ref|ZP_06658170.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli B185] gi|291433175|gb|EFF06154.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli B185] Length = 761 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY + G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VGMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|326782197|ref|YP_004322598.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] gi|310004404|gb|ADO98797.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] Length = 766 Score = 443 bits (1138), Expect = e-121, Method: Composition-based stats. Identities = 204/798 (25%), Positives = 335/798 (41%), Gaps = 82/798 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G S N +++ +VE AC GL VS+ V + +DG+ S ++ L+ Sbjct: 5 ITVIKRNGDKDSLNLEKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIETSQIQEILVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY V +R LL LR+++ H+E ++ + + Sbjct: 65 SASDLISLETPNYQYVASRLLLFDLRKQL----------NDHYEDHPFILDHVKKCADLD 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 V + + E + + + + + Y RD+ F Y G++ + D+Y +G E PQ + Sbjct: 115 VYDKTIIEKYTEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + +A L + + +YN +S TP + T Q +SC L V D Sbjct: 175 IMIATTLFQQYPKETRLDYVRRYYNAISKHKINIPTPVMAGVRTPLRQFASCVLVDVDDT 234 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L IF + G+G + +RG+ + I G + GVIPFLK T Sbjct: 235 LDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRCCT 294 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF R QN Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMQNKDI 354 Query: 500 TLFSPDEVSDLHDLYGKE-FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 +LFSP +V L+D +G F+ YE YE + + I A L+ +L ETG Sbjct: 355 SLFSPHDVPRLYDAFGMPEFDALYEQYEAD----DSVPRKTIPARELFNSLLKERSETGR 410 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------ETAVCNLGSINLLAH 610 +I D CN S V+ SNLC EITL + E A+C L +IN+ Sbjct: 411 IYIMNIDHCNSHSSFLDK--VNMSNLCQEITLPTDPINHIDDEGGEIALCILSAINVGKI 468 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +Q D AVR L+ +ID + ++ AK+S R++G+G +G L Sbjct: 469 TQLDQMDE-----LCDLAVRALEELIDYMQYPVDAAKRSTLARRSLGIGYIGLAHYLAKN 523 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y PEA ++ + E +H + AS ELA+ERGA F+ + + GV PID+ Sbjct: 524 GVKYDDPEAWKLVHDLTESFQYHLLKASNELAKERGACEGFRHTKYSNGVLPIDTYKKEV 583 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + W L+ + G+R+S A P+ + + + + I+P L Sbjct: 584 DE----LVENKLNYDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDFLS 639 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK + G + LK + ++ Sbjct: 640 VKKSKKGPLKQIVPGY--------------------------------PHLKNNYTLLWD 667 Query: 851 I-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 + D I+ + QK+ DQA S N +E + + + G KT+YY Sbjct: 668 MKDNSGYIKVTAVIQKFFDQAISGNWSYNPQNYPNNEVPMSVMTKDLIETYKYGWKTSYY 727 Query: 903 LRS---RSATSVEKSTLK 917 + +S VE + + Sbjct: 728 QNTYDAKSDLDVEDTKVS 745 >gi|326570478|gb|EGE20518.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis BC8] Length = 758 Score = 442 bits (1137), Expect = e-121, Method: Composition-based stats. Identities = 185/795 (23%), Positives = 315/795 (39%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ + Sbjct: 5 DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI E P+Y + AR + LR+ A + E Sbjct: 65 IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 +G + + + L + + + RD Y ++ + +Y + E PQ Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FF--MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 + M + + + ++ FY+ S+F+ TP + T Q SSC L Sbjct: 174 LYVLMGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I G+G + +R LG+ I G + G IPF K+ + Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + + FE Y YE + + RK+ A L+ ML Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L ++ + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +KL+ VR LD ++D + + AKK + R +G+G++ + L Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PID+ Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + Q ++ ++ ++G Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + QK+IDQ+ S N D + K L A+ G+KT YY Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 735 NTRDGADDAQGDLDD 749 >gi|157144814|ref|YP_001452133.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter koseri ATCC BAA-895] gi|157082019|gb|ABV11697.1| hypothetical protein CKO_00541 [Citrobacter koseri ATCC BAA-895] Length = 761 Score = 442 bits (1137), Expect = e-121, Method: Composition-based stats. Identities = 197/783 (25%), Positives = 316/783 (40%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGEFEPPA----------LYDHVVKM-VEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEKDDSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 469 LGAINSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L++ +KT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AIA----NEALHYNWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGVLRQVVPDY--------------------------------EGLKDRYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQA S N D + ++L A+ G+KT YY Sbjct: 673 PSNDGYLQLVGIMQKFIDQAISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTLYYH 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|326560442|gb|EGE10824.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis 7169] gi|326565823|gb|EGE15985.1| ribonucleotide-diphosphate reductase subunit alpha [Moraxella catarrhalis BC1] Length = 758 Score = 442 bits (1137), Expect = e-121, Method: Composition-based stats. Identities = 187/795 (23%), Positives = 316/795 (39%), Gaps = 69/795 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +K+ DG L N ++ ++ A L +VS V +++ Y+G+ D+ + Sbjct: 5 DTIKVTKRDGRLEPINLDKIHRVIAWAAEDLNNVSVSQVELKSHIQFYEGIRTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I ++ LI E P+Y + AR + LR+ A + E Sbjct: 65 IKAAADLISVETPDYQYLAARLAIFHLRKIAYGKFEPPHLYA-----------HVKHLTE 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 +G + + + L + + + RD Y ++ + +Y + E PQ Sbjct: 114 QGKYDQHILADYSIDEFNELNDYVDHNRDMNLAYAAVEQMMGKYLVQDRVTKRVYESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ V M L + ++ FY+ S+F+ TP + T Q SSC L Sbjct: 174 LYVLVGMCLFAGYDKAQRLDYIKRFYDATSNFYISLPTPIMSGVRTPTRQFSSCVLVECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I G+G + +R LG+ I G + G IPF K+ + Sbjct: 234 DNLDSINATTSAIVRYVSQRAGIGVNAGAIRALGSPIRGGEAQHTGCIPFFKMFQAAVKS 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ I R+ + Sbjct: 294 CSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKTMYARLIKGT 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L++ + + FE Y YE + + RK+ A L+ ML Sbjct: 354 DITLFSPSDVPGLYEAFFADQETFERLYTQYEADENIRK----RKVPARDLFSLMLQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L ++ + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTAPLDNINDEKGEIALCTLSAI 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N +KL+ VR LD ++D + + AKK + R +G+G++ + L Sbjct: 470 NLGKIEKLSDIEEPAELIVRALDALLDYQDYPVIAAKKGSTNRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y+ A+ + + E + ++ + AS +LA+E+ A F + + QG+ PID+ Sbjct: 530 GTRYSDAAALGLTHRTFEALQYYLLKASNKLAKEQSACPWFDQTTYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + Sbjct: 590 DSI----CTEPLHLDWESLRTNIKAYGLRNSTLSALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + Q ++ ++ ++G Sbjct: 646 IKASKDGILKQVVPEIERLASQY-----ELLWNIPDNNG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 + QK+IDQ+ S N D + K L A+ G+KT YY Sbjct: 680 -----YLRLVGIMQKFIDQSISANTNYDPTKFEGGKVPMKVLIQDLLTAYKFGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 735 NTRDGADDAQGDLDD 749 >gi|150015086|ref|YP_001307340.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium beijerinckii NCIMB 8052] gi|149901551|gb|ABR32384.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium beijerinckii NCIMB 8052] Length = 743 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 235/780 (30%), Positives = 372/780 (47%), Gaps = 93/780 (11%) Query: 171 SGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLR 229 GL +L + +++ ++ +LI + L EPN+ V AR +L Sbjct: 19 EGLYTED--KLLDALNPIVRKDMNKREIRNSLIQVALELTTDMEPNWQYVAARAYTYELY 76 Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 V ++ + K + + Y E+ E G+ + ++ D++ L D+K ER Sbjct: 77 DRVRSSRNLEDDKNLYQD----YYEFIESLTERGLYGEYILKNYSREDILELEKDIKPER 132 Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET--EKEKRAVEFYNLL 346 DF F Y G+ +L RY + N S IE+PQ FM +AM LA+ E + A FY++L Sbjct: 133 DFLFNYSGINLLASRYLVQDYNRSPIELPQQMFMGIAMHLAIPEKEENRVYWAKRFYDVL 192 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 SS +TPT+ N+ QLSSCF+ +V D L GI+ +L A ++K+ GG+G Sbjct: 193 SSLKATMATPTMSNARKPFYQLSSCFIDSVEDSLEGIYKSLDNFAKVSKFGGGMGIYMGK 252 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R LG+ I G G S GVIP++K+ NDTA+AV+Q G R G+V +L+ WH D+ EFL +R Sbjct: 253 IRALGSPIRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDIPEFLQIR 312 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDL-----HDLYGKEFE 519 N GDDR++ HD+ PDLF + + W + P E+ ++ D YG+++E Sbjct: 313 TNNGDDRKKAHDVFPGICYPDLFWRLAENDIDANWHMMCPHEIKNIKGYALEDFYGEQWE 372 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 Y E R +S L R ++ ETG P+ ++D N +P +H G++ Sbjct: 373 EKYYECV----SDERIEKRVMSVKDLVRLIIKSAVETGAPFAFYRDMTNKMNPNKHNGMI 428 Query: 580 HSSNLCTEITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQF 616 +SSNLCTEI N S + VCNL S+ L Sbjct: 429 YSSNLCTEIMQNMSPMKIQKSQILSDKDEYAVVEKIIPGDFVVCNLSSVVLGNIDV---C 485 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + +++ + T +R +DNVID+N +++ A+ +N +RAIGLG G+ L I + Sbjct: 486 NDEEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAIGLGTSGYHHMLVNNKIHWTE 545 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 E D+ E I+++AI AS+ +++E+G Y FKGS WD G + Sbjct: 546 EEHKSFVDKIYEKINYYAIKASMNISKEKGFYELFKGSDWDTG--------------EYF 591 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + + W+ELK+ V G RN +A+AP + A I G ++ IDP Y++ Sbjct: 592 RLRNYNSAKWNELKELVHEFGTRNGYLIAVAPNGSTATIAGTTEGIDPIMARFYLEEKKG 651 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 L +D + +A+ I+ MW Sbjct: 652 SIIPKTAPNL-------------------------------SEDNYWYYNSAYNIEQMWC 680 Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 ++ RQ+ IDQ QS NLY+ + +++ +Y +A G+K+ YY+RS+S E T Sbjct: 681 VKMNGIRQRHIDQGQSFNLYITSSYTMRQIMNLYIEACKCGVKSIYYVRSKSLEVTECET 740 >gi|261822456|ref|YP_003260562.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium wasabiae WPP163] gi|261606469|gb|ACX88955.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium wasabiae WPP163] Length = 761 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 194/790 (24%), Positives = 312/790 (39%), Gaps = 71/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 4 SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKSSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ +M L Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGEE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFANQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I+ A++ R +G+G++ F L Sbjct: 469 LGAINSLDDLEDLATLAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+ +K G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 AI----CNEPLHLDWETLRNDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D K+L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGVMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQ 732 Query: 904 RSRSATSVEK 913 +R + Sbjct: 733 NTRDGAEDVQ 742 >gi|94676899|ref|YP_588830.1| ribonucleotide-diphosphate reductase subunit alpha [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220049|gb|ABF14208.1| ribonucleoside-diphosphate reductase, alpha subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 760 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 194/798 (24%), Positives = 322/798 (40%), Gaps = 71/798 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ ++ A GL++VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRKEPINLDKIHRVINWAADGLENVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ T ++ R ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAVLHLRKKAYGTFEPPTL-----------YDHVSRLVKM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDQHLLKDYSFEEFTQMDKFINHWRDMDFAYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L T + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSSYPRTNRLDYIRRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R +G+ I G G IPF K + Sbjct: 233 SLNSINATSSAIVKYVSRRAGIGINAGRIRAIGSQIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ N Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGIETNRVRYMDYGVQINKLMYQRLVNNDQ 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +FE Y YE+ + R I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQNKFEQLYCQYEKDVSIRK----RSIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG ++ D CN SP +V + SNLC EI L + E G I L A N Sbjct: 409 TGRIYVQHVDHCNNHSPFDVNVAPIRQSNLCLEIILPTKPIEDINEENGEIALCTLSALN 468 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D AVR LD ++D + + A++ R +G+G++ + L Sbjct: 469 LGTINSLDDFEELTMLAVRALDALLDYQSYPLTSAQRGALNRRPLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS +LA+ERGA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNKLAKERGACPWFHETTYAQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ W+ L+K +K G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 SI----VSEPLHYDWESLRKDIKKSGLRNSTLSAMMPSETSSQISNATNGIEPPRGHVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ +G V V + D+ ++G + Sbjct: 645 KASKNGILRQVVPESVRL-----HNAYEFLWDMPNNNGYLH------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL- 903 QK++DQ+ S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGVMQKFVDQSISANTNYDPSRYPYGKVPMKQLLKDLLTAYKFGIKTLYYQN 733 Query: 904 -RSRSATSVEKSTLKGVD 920 R + + E + + Sbjct: 734 TRDGAKETQEDIQVTQQE 751 >gi|294140835|ref|YP_003556813.1| ribonucleoside-diphosphate reductase subunit alpha [Shewanella violacea DSS12] gi|293327304|dbj|BAJ02035.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella violacea DSS12] Length = 762 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 189/796 (23%), Positives = 320/796 (40%), Gaps = 79/796 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K+ G + + +++ ++ A L++VS V ++ +DG+ + +I Sbjct: 5 MKVTKRSGERETIDLEKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ LY +E G Sbjct: 65 AAADLISPEAPDYQFLSARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LVESG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + E +L L + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDQHILEDFSREELDILDGYVDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFAKYPQETRLSYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHLDYGVQLNKLMYQRLIKGGMI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EFE Y YE + +I A L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFERLYLQYEADNSVRKT----QIKATELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN SP + SNLC EI L + E A+C L ++NL Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D +L AVR LDN++D + I A++S+ R +G+G++ F + L Sbjct: 470 GKIK-----DLSELEPLADLAVRALDNLLDYQDYPIIAARQSSMNRRTLGIGVINFANYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A I ++ E I ++ + AS+ LA+E+G F + + +GV PID+ Sbjct: 525 AKEGVRYSDGSANNITHKTFEAIQYYLLKASMNLAKEKGPCPLFHETTYSKGVLPIDTYK 584 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + + W+ L++ + G+RNS A+ P+ T + I + I+P Sbjct: 585 RSLDKI----CDEPLHMDWETLRQDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VKS+ G V ++ + +DG I Sbjct: 641 LISVKSSKDGQLKQVVPDFEK-----YQHSYELLWQMPNNDGYIQ--------------- 680 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 QK++DQA S N ++ + L A+ +GLKT Sbjct: 681 -----------LVGLMQKFVDQAISANTNYDPSRFEGNKVPMQVLLKDLLNAYKLGLKTL 729 Query: 901 YYLRSRSATSVEKSTL 916 YY +R S + ++ Sbjct: 730 YYHNTRDGASDQLDSI 745 >gi|152997007|ref|YP_001341842.1| ribonucleotide-diphosphate reductase subunit alpha [Marinomonas sp. MWYL1] gi|150837931|gb|ABR71907.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas sp. MWYL1] Length = 754 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 186/797 (23%), Positives = 318/797 (39%), Gaps = 69/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +GT + N +++ ++ A GL +VS V + ++G+ +D+ LI Sbjct: 3 TLTVTKRNGTTENINLEKIHKVIAWAAEGLDNVSVSQVELKARIQFFEGIRTTDIHETLI 62 Query: 204 FSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + P+Y + AR + LR++ ++ +E+ Sbjct: 63 KSAADLISESTPDYQYLAARLAIFHLRKKAFGDFEPPHL-----------YKHVKNLVEQ 111 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 L E + D L L + RD F Y ++ L +Y + G+ E PQ Sbjct: 112 KRYDAQLLEKYTEEDFNELNTFLDHSRDMDFSYAAVKQLEGKYLVQNRVTGAIYESPQFI 171 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + E+ FY+ +S F TP + T Q SSC L D Sbjct: 172 YILVAACLFAEYDKKERLNLIRRFYDAVSKFKISLPTPIMSGIRTPTRQFSSCVLIECGD 231 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 232 SLDSINATSSAIVKYVSQRAGIGVNAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 291 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ + Sbjct: 292 SQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKGGN 351 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EF+ Y YE+ + + I A L+ + Sbjct: 352 ITLFSPSDVPGLYDAFFADQEEFDRLYTMYEQDPSIRK----QTIKATELFTLFASERAS 407 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L + + G I L Sbjct: 408 TGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLNSIDDKEGEIALCTLSAFN 467 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L VR LD+++D + I A+++ R +G+G++ + L Sbjct: 468 LGALENLDELEELAELIVRALDSLLDYQNYPIPAAQRATELRRTLGVGVINYAYYLAKNG 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A E+ ++ E I + + AS +LA+E G +F + + +G+ PIDS + Sbjct: 528 VKYSDGSANELTHKTFEAIQYFLLKASNKLAKEFGPCLAFNETTYSKGILPIDSYKKEID 587 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ W+ L+ + T G+RNS A+ P+ T + I + I+P + + Sbjct: 588 NI----VSNELFYDWETLRNDIVTHGLRNSTLTALMPSETSSQISNATNGIEPPRGFVSI 643 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ + +DG + Sbjct: 644 KASKDGILKQVVPEFERLKE-----NYELLWTIPSNDGYLQ------------------- 679 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K + A+ +G+KT YY Sbjct: 680 -------LVGIMQKFVDQAISANTNYDPQKFESQKVPMKVILKDLLTAYKLGVKTLYYHN 732 Query: 905 SRSATSVEKSTLKGVDG 921 +R ++ + G Sbjct: 733 TRDGADDKQEDMDDCAG 749 >gi|132601|sp|P26685|RIR1_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|554615|gb|AAA42732.1| ribonuclease reductase [African swine fever virus] Length = 779 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 210/783 (26%), Positives = 357/783 (45%), Gaps = 74/783 (9%) Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 LI L +Y+ + AR + L + ++ KA + +++ Sbjct: 38 LISYCSALTILHYDYSTLAARLSVYLLHQSTASSF----SKAVSLQAAQSCSRLSSHFVD 93 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 K + + + + Y RD+ LG++ + + Y L +G +E PQ Sbjct: 94 VVYKYKAI-----------FDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDA 142 Query: 321 FMRVAMGLA-LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 +MRVA+ + + K + Y+LLS ++PT+FN+GT+ PQLSSCFL V D+ Sbjct: 143 YMRVAIMIHGMGRVVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNVNDN 202 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L ++ ++ +++ GG+G + +R + I G+ +S G+ ++ + N + N Sbjct: 203 LENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYAN 262 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRK---NTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 QGG R GA YLE WH D+ FL + + + R ++ W+PDLFM+ + Sbjct: 263 QGGLRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQ 322 Query: 497 ------AGWTLFSPDEVSDLHDLY----------GKEFEIAYENYERQADRGEIKVFRKI 540 W LFSPD+ +LH ++ +EF+ Y Y E + Sbjct: 323 IHNRGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVA-----EKRYTGVT 377 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---ET 597 +A + ++ + + G+P+I FKD N +S HVG + +SNLC EIT+ E Sbjct: 378 TAKEIIKEWFKTVVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQ 437 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 VCNL ++NL A + +DY L LDN+ID + E ++SN HR IG Sbjct: 438 GVCNLAAVNLAAFIRESSYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIG 497 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G+ G L + + SPEA+ I + + + A+ S+ELA+E+G++ SF GS Sbjct: 498 IGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAAS 557 Query: 718 QGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 +G+ D E R + G+RN A+ PTAT Sbjct: 558 KGLLQPDLWVRCGDLIPSWENRVAQTTQGVLTPKKWWQLRLAAIQGVRNGYLTALMPTAT 617 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 +N G ++ +P NLY + +SG+F ++N +L+++L++ +LW E + L GSI Sbjct: 618 SSNSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQQLLNAGGSI 677 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 +I IP ++++ + T+ E++ L + A+ R ++ Q+ SLN Y EP ++ + Sbjct: 678 QHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVL 737 Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 W GL T +YY +K ++ + NA +C Sbjct: 738 GWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKACNA-----------------------DC 774 Query: 951 EVC 953 E C Sbjct: 775 EAC 777 >gi|238920520|ref|YP_002934035.1| ribonucleotide-diphosphate reductase subunit alpha [Edwardsiella ictaluri 93-146] gi|238870089|gb|ACR69800.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Edwardsiella ictaluri 93-146] Length = 760 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 201/806 (24%), Positives = 315/806 (39%), Gaps = 71/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY R IE Sbjct: 64 KAAADLISRETPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDHVV-RLIEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDTHLLTDFSRDEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ Q+ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHIDYGVQLNRLMYQRLIQSGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +FE Y YE+ RKI AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQSQFERLYVQYEQDNSIR----QRKIKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP HV V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDAHVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LAQE+GA F + + QG+ PIDS + Sbjct: 529 VRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPIDSYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AICSEPL----HYDWETLRTEIVRDGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ + +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWAMPGNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + K+L A+ +G+KT YY Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R E + + Sbjct: 734 TRD--GAEDMQEDLGSAQDDGCESGA 757 >gi|284009346|emb|CBA76527.1| ribonucleoside-diphosphate reductase 1 alpha chain [Arsenophonus nasoniae] Length = 767 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 191/802 (23%), Positives = 319/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL+DVS V + YDG+ SD+ +I Sbjct: 8 SLLVTKRDGHKERIDLDKIHKVITWAAEGLKDVSVSQVELRSQIQFYDGIKTSDIHETMI 67 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI + P+Y + AR + LR++ LY ++ Sbjct: 68 KAAADLISADTPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYQHVLHM-VKI 116 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + L + RD F Y ++ L +Y ++G E Q Sbjct: 117 GKYDKHLLTDYSAEEFEQMDSFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 176 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 177 YILVAACLFSRYPKETRLDYIHRFYDAISNFKISLPTPIMAGVRTPTRQFSSCVLIECGD 236 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 237 SLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 296 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ I L +R+ ++ Sbjct: 297 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQINKLMYERLIKSEE 356 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V+ L++ + EFE Y YE+ A +++ A+ L+ M+ Sbjct: 357 ITLFSPSDVAGLYEAFFADQSEFERLYLKYEQDASIR----QKRVKALDLFSLMMQERAS 412 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + G I L Sbjct: 413 TGRIYIQNVDHCNTHSPFDPKVAPIRQSNLCLEIALPTRPLNDINDEKGEIALCTLSAFN 472 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD+++D + I A+K + R +G+G++ + L Sbjct: 473 LGAITSLDELEELAVLAVRALDSLLDYQNYPIIAAEKGSMGRRTLGIGVINYAYYLAKHG 532 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PIDS + Sbjct: 533 VHYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNDTTYAKGILPIDSYKKSLD 592 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W L+K +K G+RNS A+ P+ T + I + I+P + + Sbjct: 593 A----LTSEPLHYDWQTLRKNIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 648 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V D ++ + +DG + Sbjct: 649 KASKDGILRQVVPEYERL-----KNDYELLWQMPNNDGYLQ------------------- 684 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N ++ +L A+ G+KT YY Sbjct: 685 -------LVGIMQKFIDQSISANTNYDPTRFPNNKVPMNQLLKDLLLAYKYGVKTLYYHN 737 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 738 TRDGAEDTQVDLEEVVESADSD 759 >gi|238753721|ref|ZP_04615082.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] gi|238707957|gb|EEQ00314.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] Length = 761 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 189/800 (23%), Positives = 318/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ ++ + ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------FDHVSKMVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E D + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYTAEDFQQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRHTRMDYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ Q Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLQGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + ++FE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQEQFERLYTQYEQDSSIR----QQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDPNGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + IE A++ R +G+G++ + L Sbjct: 469 LGAIDSLDELEDLANLAVRALDALLDYQDYPIEAARRGAMGRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNHLAREQGACEWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++ G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----SDEPLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWEMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFIDQAISANTNYDPSRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|221134588|ref|ZP_03560893.1| ribonucleotide-diphosphate reductase subunit alpha [Glaciecola sp. HTCC2999] Length = 773 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 192/831 (23%), Positives = 317/831 (38%), Gaps = 84/831 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + + ++ ++ A L +VS V + + +DG+S + LI Sbjct: 4 QLSVTKRDGVTEAIDLDKIHKVITWAAKDLHNVSVSQVEIKAHIQFFDGISTEVIHETLI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + P+Y + AR + LR++ ++ +E Sbjct: 64 KSAADLISTDSPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------FDHVKSMVER 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + L + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDEHLLADYTAEEFEAMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S F TP + T Q SSC L D Sbjct: 173 YVLVAACLFANYPKATRLDYIKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIEAGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ L R+ +N Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYTRLIKNQN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +F+ Y YE + + I A+ L+ + Sbjct: 353 ITLFSPSDVPGLYDAFFADQDKFDELYVKYENDPSIRK----KSIKAMELFSLFMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L + E + G I L Sbjct: 409 TGRIYLQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLEHVMDPEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD+++D + + A+ ++ R +G+G++ F L Sbjct: 469 LGAIKSLDELEELADLAVRALDSLLDYQDYPVPAARNASLGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LA E+G F + + QG+ PID+ + Sbjct: 529 VKYSDHSANGLIHKTFEAIQYYLMKASNNLAIEQGPCPLFNETTYSQGLMPIDTYKKDID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + L WD L++ V G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 NI----CDEPLHLDWDSLRESVVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 KS+ G V N + ++ DL +DG + Sbjct: 645 KSSKDGVLKQVVPDYENLKDKY-----ELLWDLPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + QK++DQ S N ++ K L + +G+KT YY Sbjct: 681 -------LCAIMQKFVDQTISANTSYDPSKYEGNKVPMKLLIKDLLTTYKLGIKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953 +R + D L+A+ T D C C Sbjct: 734 TRDGAG------ESSDADLSAIKQTPQAQVVIEEE-------DDGCAGGAC 771 >gi|23100544|ref|NP_694011.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacillus iheyensis HTE831] gi|22778777|dbj|BAC15045.1| ribonucleoside-diphosphate reductase alpha subunit [Oceanobacillus iheyensis HTE831] Length = 744 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 251/775 (32%), Positives = 369/775 (47%), Gaps = 89/775 (11%) Query: 165 IVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRT-LIEKEPNYAKVTARF 223 VE A L +++ + K + SE+ LE ALI + + E PN+ AR Sbjct: 16 KVERASQNL-NINKNEWYEKAEKIIPTNSSEAKLEDALINVALENMDEATPNWGFAAARI 74 Query: 224 LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 +EKL RE T Y + E+G+ L + D+ Sbjct: 75 YVEKLYREASNNRG-----YTQGSYGSFYA-LLEQLTEKGIYTPALLQKYTKEDIEEFGK 128 Query: 284 DLKYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAV 340 ++ ERD F YLG+ + RY + E+PQ +M +AM + E ++++ + Sbjct: 129 AIQPERDQLFNYLGIYTVATRYLATDHEKNVYELPQERWMVIAMHIMQDEPADQRQENVL 188 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 E Y LS+ + +TPTL N+G H QLSSCF+ TV D L I+ + + A L+K GG+ Sbjct: 189 EAYWALSNLYMTVATPTLTNAGKTHGQLSSCFIDTVDDSLQSIYDSNSDIAKLSKNGGGI 248 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G +R G+ I G G S GV+P++K N+TAV+V+Q G RKGA+ YL+ WH D+E Sbjct: 249 GVYMGKIRARGSSIKGFKGMSSGVVPWIKQLNNTAVSVDQLGTRKGAIAIYLDVWHQDIE 308 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLDL+ N GDDR R HD+ T +PD FM++V W LF P EV + ++F Sbjct: 309 SFLDLKLNNGDDRMRAHDIFTGVCLPDYFMEQVENRGDWYLFDPHEVRQVMGYSLEDFYD 368 Query: 521 A------YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + + E RK+ A+ + ++++ E+G P++ ++D N ++ Sbjct: 369 EQKGSGSFRTRYEECIANEALSKRKVPAIEIMKRLMKSQLESGTPFMFYRDEVNRQNANA 428 Query: 575 HVGVVHSSNLCTEITLNSSSEE--------------------TAVCNLGSINLLAHFANN 614 H G+++ SNLCTEIT N S E VCNL S+NL N Sbjct: 429 HEGLIYCSNLCTEITQNQSPTEFVEEFLENENTIVKKFKSGDYVVCNLSSVNLGRAVKN- 487 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D L I VR+LDNVIDIN I++A+ +N +RAIGLG G+ L L I + Sbjct: 488 ----DVLERLIPIQVRMLDNVIDINTLPIKQAEITNRKYRAIGLGTFGWHHLLALKGIAW 543 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EAV ADE E I++ I +S+EL++E+G Y ++GS W G + Sbjct: 544 ESDEAVAYADELYEKIAYLTIQSSMELSKEKGHYPVYEGSKWQTG--------------E 589 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + WDELK VK GMRN MA+AP +T A I G + SIDP +Q Y + Sbjct: 590 YFDQKGYTGNKWDELKAEVKQHGMRNGYLMAVAPNSTTAMIAGSTASIDPIFQVFYYEEK 649 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDP 853 V + ++ +A+ +D Sbjct: 650 KDFKIPVTAP-------------------------------ELDHHTYNVYRRSAYIVDQ 678 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + ++ ++RQK IDQ+ S N Y+ L ++ QAW GLKTTYY+RS S Sbjct: 679 RFSVKQNAKRQKHIDQSISFNFYVPNTIKASVLLDLHTQAWREGLKTTYYVRSTS 733 >gi|167623962|ref|YP_001674256.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella halifaxensis HAW-EB4] gi|167353984|gb|ABZ76597.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella halifaxensis HAW-EB4] Length = 762 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 199/810 (24%), Positives = 332/810 (40%), Gaps = 79/810 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + + ++ ++E A GL +VS V ++ +DG++ + +I Sbjct: 5 MTVTKRSGERETIDLDKIHRVIEWAAKGLNNVSVSEVELRSHLQFFDGIATEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ LY +E+G Sbjct: 65 AAADLISPEAPDYQFLSARLAVFHLRKKAFGQFEPP----------KLYDHVVK-LVEQG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + E +L L + + RD F Y ++ L +Y ++ E Q + Sbjct: 114 KYDAHILEDYSQEELDILDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + K +FY+ S F TP + T Q SSC L D Sbjct: 174 ILVAACLFAKYPKETRLKYVKDFYDATSLFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G D R ++ I + +R+ Q Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVDDNRVRHLDYGVQINKVMYQRLIQGGMI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V ++D + +EFE Y YE + ++I AV L+ M+ T Sbjct: 354 SLFSPSDVPGMYDAFFEDQQEFERLYLKYEADDSIRK----KQIKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN SP V SNLC EI L + E A+C L ++NL Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A D+L AVR LDN++D + I AKK++ R +G+G++ F + L Sbjct: 470 GAIKK-----LDELEPLADLAVRALDNLLDYQDYPIISAKKASMNRRTLGIGVINFANYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A I ++ E I F+ + AS++LAQE+GA +F + + +G+ PID+ Sbjct: 525 AKEGVRYSDGSANGITHKTFEAIQFYLLKASMKLAQEQGACPAFHETTYAKGILPIDTYK 584 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + L W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 585 RDLDKI----CDEPLHLDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VK++ G V + ++ + +DG + Sbjct: 641 LISVKASKDGQLKQVVPDFEK-----YQYSYELLWQMPNNDGYLQ--------------- 680 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTT 900 QK++DQ+ S N D K L A+ G+KT Sbjct: 681 -----------LVGLMQKFVDQSISANTNYDPTRFEGGRVPMKVLLKDLLTAYKYGVKTL 729 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 YY +R S + ++ + ++ Sbjct: 730 YYHNTRDGASDSLDDITAIEKEDDSCAGGA 759 >gi|71282068|ref|YP_269048.1| ribonucleotide-diphosphate reductase subunit alpha [Colwellia psychrerythraea 34H] gi|71147808|gb|AAZ28281.1| ribonucleoside-diphosphate reductase, alpha subunit [Colwellia psychrerythraea 34H] Length = 756 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 184/791 (23%), Positives = 319/791 (40%), Gaps = 71/791 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 L + +G + + +++ ++ A GL+ VS V +++ YDG+ D+ + Sbjct: 3 NNLFVTKRNGEKETIDLEKIHRVIAWAADGLEQVSVSQVELKSHIQFYDGIKTEDIHETI 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI +E P+Y + AR + LR++ LY +E Sbjct: 63 IKSAADLISEETPDYQYLAARLAVFHLRKKAYGQFEPPA----------LYDHVVK-LVE 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + L D ++++ + + RD F Y ++ L +Y ++G E Q Sbjct: 112 AGKYDQHLLADYTKDDFEHMSSFMDHSRDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQF 171 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ V+ L + + +FY+ +S F TP + T Q SSC L Sbjct: 172 LYILVSACLFAKYPVESRLRYVEDFYHAISRFKISLPTPIMAGVRTPTRQFSSCVLIECG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G IPF K + Sbjct: 232 DSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ + Sbjct: 292 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +V L+D + ++FE Y YE + ++I A+ L+ Sbjct: 352 SITLFSPSDVPGLYDAFFEDQEKFERLYVQYE----NDDSIRKKRIKAIELFTLFAQERA 407 Query: 555 ETGHPWITFKDPCNIRSPQQ-HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG ++ D CN SP + SNLC EI L + G I L Sbjct: 408 STGRIYLQNVDHCNTHSPFDSSKAAIRQSNLCLEIALPTKPMNDINDENGEIALCTLSAF 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D+L AVR LD+++D + I A+ ++ R +G+G++ + L Sbjct: 468 NLGAIDSLDELEGLADLAVRALDSLLDYQDYPIAAAQSASMARRTLGIGVINYAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y++ A + + E I F+ + A+ ELA+E+GA F +L +G+ PID+ Sbjct: 528 GLYYSNGSANNLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKGILPIDTYKKTI 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L++ +K G+RNS A+ P+ T + I + I+P + Sbjct: 588 DDI----TGEPLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIEPPRGLIS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + ++ ++ + G Sbjct: 644 IKASKDGVLKQVVPEYEKLKG-----NYELLWNIPDNQG--------------------- 677 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY- 902 +E QK++DQA S N D + K++ A+ +G+KT YY Sbjct: 678 -----YLELVGIMQKFVDQAISANTNYDPNKFEGGKVPVKQILKDILTAYKLGVKTLYYH 732 Query: 903 -LRSRSATSVE 912 R ++ +E Sbjct: 733 NTRDGASDDIE 743 >gi|331087815|ref|ZP_08336740.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409510|gb|EGG88951.1| hypothetical protein HMPREF1025_00323 [Lachnospiraceae bacterium 3_1_46FAA] Length = 761 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 240/786 (30%), Positives = 375/786 (47%), Gaps = 101/786 (12%) Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PN 215 + +E+ + + V S +L E + + + + ALI ++ L +E P Sbjct: 25 QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGGRFDALIKAAAELTSQEAPR 84 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 + + L + ++ + ++ L E+G+ + E+ Sbjct: 85 WEMIAGWLLDFRFSEKLKEEEKSIGISDLYEKIVYL--------TEKGLYGSYIMENYSK 136 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE 334 ++V + + ER+ F Y GL +L RY +E PQ F+ +A+ LA+ E Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196 Query: 335 --KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 + EFY++LS +TPTL N+ QLSSCF+ TVPD L GIF ++ AM Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++KY GG+G + VR G+ I G G + GVI ++++ NDTAVAV+Q G R GAV YL Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV--- 507 + WH D+ EFL LR N GD+R + HD+ A PDLF K +N W L P E+ Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376 Query: 508 --SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 L D +G+E+E Y + A + R + L R ++ ETG P+ +D Sbjct: 377 KGYCLEDSFGEEWERRYWDCVHDARIKK----RTVLLKDLIRLIIKSAAETGTPFAFNRD 432 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNL 602 N +P H G+++ SNLCTEI N S+ E VCNL Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S++L N D + +RT VR LDNVID+N + + AK +NHT+R+IGLG+ G Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L I + S E + D+ E I++ AI AS + A+E+G+Y F+GS W+ G Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESG--- 606 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 W EL+++V GMRN+ +AIAPT++ + I G + I Sbjct: 607 -----------AYFEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 DP V+N + + E K +M+ + + + Sbjct: 656 DP----------------VMNKYFLEEKKG------SMLPRVA---------PDLSPETY 684 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + A ID W + + RQ+ +DQAQS+N Y+ ++ + +++ +Y +AW G+KT Y Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744 Query: 902 YLRSRS 907 Y+RS+S Sbjct: 745 YVRSKS 750 >gi|2914260|pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli gi|2914262|pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli gi|2914264|pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli Length = 761 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 315/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT +Y Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLFYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|254361271|ref|ZP_04977414.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] gi|261495802|ref|ZP_05992237.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. OVINE] gi|110735341|gb|ABG89241.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica] gi|153092767|gb|EDN73810.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] gi|261308536|gb|EEY09804.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. OVINE] Length = 756 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 184/795 (23%), Positives = 308/795 (38%), Gaps = 71/795 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +GT N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ E+ + + Sbjct: 64 KAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL-----------YEHVKKLVAL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E + L+ N G + R M+ I + +R+ + Sbjct: 293 SQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L++ + +FE Y YE+ RK+ AV L+ ++ Sbjct: 353 ISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIR----QRKVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN V + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L VR LD ++D + + A+ S+ RA+G+G++ + L Sbjct: 469 LGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVINYAYYLAKNQ 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS+ LA+E+GA + F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLPIDTYKKEID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W++L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 E----LTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGIEPPRGYISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++I Sbjct: 645 KASKDGILKQVVPEYER--------------------------------LKAYYELLWDI 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 M + QK++DQA S N + K L A+ GLKT YY Sbjct: 673 PNMDGYLHLVGIMQKFVDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQ 732 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 733 NTRDGAEDVQDDLDE 747 >gi|261493905|ref|ZP_05990415.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310438|gb|EEY11631.1| ribonucleotide reductase alpha chain [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 756 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 184/795 (23%), Positives = 308/795 (38%), Gaps = 71/795 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +GT N ++ ++ A GL++VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ E+ + + Sbjct: 64 KAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHL-----------YEHVKKLVAL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E + L+ N G + R M+ I + +R+ + Sbjct: 293 SQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQINKMMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L++ + +FE Y YE+ RK+ AV L+ ++ Sbjct: 353 ISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIR----QRKVKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN V + SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L VR LD ++D + + A+ S+ RA+G+G++ + L Sbjct: 469 LGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALGVGVINYAYYLAKNQ 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS+ LA+E+GA + F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTTYAKGLLPIDTYKKEID 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W++L++ + G+RNS A+ P+ T + I + I+P + V Sbjct: 589 E----LTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISNATNGIEPPRGYISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++I Sbjct: 645 KASKDGILKQVVPEYER--------------------------------LKAYYELLWDI 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 M + QK++DQA S N + K L A+ GLKT YY Sbjct: 673 PNMDGYLHLVGIMQKFVDQAISANTNYDPDRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQ 732 Query: 904 RSRSATSVEKSTLKG 918 +R + L Sbjct: 733 NTRDGAEDVQDDLDE 747 >gi|114563304|ref|YP_750817.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella frigidimarina NCIMB 400] gi|114334597|gb|ABI71979.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella frigidimarina NCIMB 400] Length = 762 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 194/792 (24%), Positives = 323/792 (40%), Gaps = 79/792 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G S + ++ ++ A GL++VS V ++ +DG+ + +I Sbjct: 5 MTVTKRSGERESIDLDKIHRVITWAAKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y V AR + LR++ ++ + +E G Sbjct: 65 AAADLISPESPDYQFVAARLAVFHLRKKAFGQFEPPTL-----------YDHVTKLVEIG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + +L L + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDMHIMADYSREELDILDTYIDHWRDLNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + K +FY+ S F TP + T Q SSC L D Sbjct: 174 ILVAACLFARYPKEIRLKYIKDFYDATSLFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G D R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGEYI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EFE Y YE+ ++ + ++I AV L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFEDQAEFERLYLQYEQDSNIRK----KQIKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN SP + SNLC EI L + E A+C L ++NL Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIKQSNLCLEIALPTKPLTNIDDPDGEIALCTLSALNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A D +L AVR LDN++D + I+ A+ S+ R +G+G++ F + L Sbjct: 470 GAI-----KDLSELEPLADLAVRALDNLLDYQDYPIKAAQTSSMNRRTLGIGVINFANYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y+ A + ++ E I F+ + AS+ LA+E+GA F + + +G+ PID+ Sbjct: 525 AKNGKKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEQGACPLFHETTYSKGILPIDTYK 584 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + + W+ L+ +K G+RNS A+ P+ T + I + I+P Sbjct: 585 RDLDKI----CDEPLHMDWESLRSDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRG 640 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VK++ G V LK + ++ ++ +DG I Sbjct: 641 LISVKASKDGQLKQVVPDF-ELLKDK----YELLWNMPNNDGYIQ--------------- 680 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTT 900 QK+IDQA S N D + L + +G+KT Sbjct: 681 -----------LVGLMQKFIDQAISANTNYDPSRFEGGRVPMQTLLKDLLSVYKLGIKTL 729 Query: 901 YYLRSRSATSVE 912 YY +R S + Sbjct: 730 YYHNTRDGASDQ 741 >gi|268591163|ref|ZP_06125384.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] gi|291313389|gb|EFE53842.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] Length = 763 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 193/802 (24%), Positives = 315/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL +VS V + YDG+ SD+ +I Sbjct: 4 SLLVTKRDGHKERIDLDKIHKVITWAAEGLSNVSVSQVELRSQIQFYDGIRTSDIHETMI 63 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI P+Y + AR + LR++ ++ +E Sbjct: 64 KAAADLITGDTPDYQYLAARLAIFNLRKKAYGQFEPPAL-----------YKHVKHLVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSEAEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSHYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKNQD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + + AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDENIRKS----SVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ + R +G+G++ + L Sbjct: 469 LGAIDSLDELEELAILAVRALDALLDYQDYPIIAAKQGSMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QGV PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGVLPIDTYKKELD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L++ +K G+RNS A+ P+ T + I + I+P + + Sbjct: 589 K----LTNEPLHYDWEALRQEIKQHGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ + + G + Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNSGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTRFESGKVPMNQLLKDLLLAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755 >gi|212635282|ref|YP_002311807.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella piezotolerans WP3] gi|212556766|gb|ACJ29220.1| Ribonucleoside-diphosphate reductase [Shewanella piezotolerans WP3] Length = 801 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 194/785 (24%), Positives = 320/785 (40%), Gaps = 69/785 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G + + ++ ++E A GL +VS V ++ ++G+ + +I Sbjct: 44 MTVTKRSGERETIDLDKIHRVIEWAAKGLTNVSVSEVELRSHLQFFEGIPTEAIHETIIK 103 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + AR + LR++ LY IE G Sbjct: 104 AAADLISPEAPDYQFLAARLAIFHLRKKAFGQFEPP----------KLYDHVVK-LIELG 152 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + E ++ L + + RD F Y ++ L +Y ++ E Q + Sbjct: 153 KYDAHILEDYSREEIDILGGYIDHWRDMNFSYAAVKQLEGKYLVQNRVSHEIYESAQFLY 212 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + K +FY+ S+F TP + T Q SSC L D Sbjct: 213 ILVAACLFAKYPKETRLKYIKDFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 272 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 273 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 332 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G D R ++ I L +R+ Q Sbjct: 333 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVDDNRIRHLDYGVQINKLMYQRMIQGGMI 392 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V ++D + +EFE Y YE E +++ AV L+ M+ T Sbjct: 393 SLFSPSDVPGMYDAFFEDQEEFERLYLKYEAD----ESIRKQQVKAVELFSLMMQERAST 448 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP V SNLC EI L + G I L A N Sbjct: 449 GRIYIQNVDHCNTHSPFDSKVAPVRQSNLCLEIALPTKPLNNINDPDGEIALCTLSALNL 508 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + ++L AVR LDN++D + I A+K++ R +G+G++ F + L + Sbjct: 509 GAIKNLEELEPLADLAVRALDNLLDYQDYPIISAEKASMNRRTLGIGVINFANYLAKEGV 568 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A I ++ E I ++ + AS LA+E+GA SF + + +G+ PID+ + Sbjct: 569 RYSDGSANSITHKTFEAIQYYLLKASNNLAKEQGACPSFHETTYSKGILPIDTYKRDLDK 628 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + W+ L++ +KT G+RNS A+ P+ T + I + I+P + VK Sbjct: 629 I----CDEPLHMDWESLREEIKTHGLRNSTVSALMPSETSSQISNATNGIEPPRGLISVK 684 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + + ++ + +DG I Sbjct: 685 ASKDGQLKQVVPDF-----DKYQYSYELLWQMPNNDGYIQ-------------------- 719 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQ+ S N D + K L A+ G+KT YY + Sbjct: 720 ------LVGLMQKFVDQSISANTNYDPGRFPDGKVPMKVLLKDLLTAYKYGVKTLYYHNT 773 Query: 906 RSATS 910 R S Sbjct: 774 RDGAS 778 >gi|227114437|ref|ZP_03828093.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 761 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 194/783 (24%), Positives = 309/783 (39%), Gaps = 71/783 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 4 SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ +M L Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSQEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ A + ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+ +K G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 AI----CNEPLHLDWEALRNDIKAYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +++ Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWDM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D K+L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQ 732 Query: 904 RSR 906 +R Sbjct: 733 NTR 735 >gi|183599609|ref|ZP_02961102.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827] gi|188021859|gb|EDU59899.1| hypothetical protein PROSTU_03094 [Providencia stuartii ATCC 25827] Length = 763 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 191/802 (23%), Positives = 314/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL +VS V + YDG+ SD+ +I Sbjct: 4 SLLVTKRDGHKERIDLDKIHKVITWAAEGLNNVSVSQVELRSQIQFYDGIRTSDIHETMI 63 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI P+Y + AR + LR++ ++ R +E Sbjct: 64 KAAADLITGDTPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------YKHVTRLVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSQEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSHYPKETRLDYIRRFYDAASTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ +N Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKNQD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYLAYEQDDSIRKS----SVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNNINDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + I AKK R +G+G++ + L Sbjct: 469 LGAIENLDELEELAVLAVRALDALLDYQDYPIIAAKKGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYSKGILPIDTYKKELD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++ G+RNS A+ P+ T + I + I+P + + Sbjct: 589 K----LTDEPLHYDWETLRKDIQQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V N ++ + + G + Sbjct: 645 KASKDGILRQVVPDYENLKGAY-----ELLWQMPSNSGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQ+ S N D + +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQSISANTNYDPTRFATGKVPMNQLLKDLLLAYKFGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755 >gi|315928436|gb|EFV07748.1| ribonucleoside-diphosphate reductase, alpha subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 698 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 278/760 (36%), Positives = 394/760 (51%), Gaps = 118/760 (15%) Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 Y + + + R+L +DL L +K ERD F YLG++ LYDRY + Sbjct: 2 NRYNHLCEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKD 61 Query: 310 -NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 G IE+PQ FM +AM LA E ++ A +FY+L+S F M +TPTL N+ T QL Sbjct: 62 SKGMPIELPQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQL 121 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SSC++ + PD++ GIF + QE A+L+K+ GG+G DW+ VR +G I G + G+IPFL Sbjct: 122 SSCYIGSTPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFL 181 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ ND AVAV+Q G RKGA+ Y+E WH+D+ +F+DLRKN+G++RRR H++ A WI DL Sbjct: 182 KITNDIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDL 241 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 FMKRV N WTLF P + +DL DLYG+ FE YE YE+ E + A LW+K Sbjct: 242 FMKRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKD----ESITKEIVEAKELWKK 297 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN------- 601 +L FETG P++ FKD N +P HVG++ SSNLCTEI N+ + Sbjct: 298 ILLNYFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDE 357 Query: 602 --------------------------------------------LGSINLLAHFANNQFD 617 NL + + + Sbjct: 358 LHFDEEQKVVIDRGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT 417 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 + + + TA+R+LDNVID+N + K K +N RAIGLG+MG L I + S Sbjct: 418 KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWGSD 477 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 E + DE ME ISF AI+AS LA E+G+Y F+GS W +G+FPID A+ Sbjct: 478 EHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKALTLRE 537 Query: 738 -MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + S W +L+++VK GMRN MAIAPT++I+ + G +Q+I+P Y+ + + N+S Sbjct: 538 GLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFEQNLS 597 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G VV + + D + + A+E+D L Sbjct: 598 GMIPVV-------------------------------VPNLSLDTWQYYTPAYELDQKIL 626 Query: 857 IESASRRQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 +++A+ R KWIDQ QSLN++L + SG L+ IY+ AW +G+K+TYYLRS S Sbjct: 627 VKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQLAWELGVKSTYYLRSES------- 679 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 K+N + ECE CQ Sbjct: 680 ---PDSEKVNVADRSI------------------ECEGCQ 698 >gi|148244628|ref|YP_001219322.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Vesicomyosocius okutanii HA] gi|146326455|dbj|BAF61598.1| ribonucleoside-diphosphate reductase alpha subunit [Candidatus Vesicomyosocius okutanii HA] Length = 758 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 180/787 (22%), Positives = 320/787 (40%), Gaps = 75/787 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K+ +G S + +++ +V A L+ VS V +DG+ D+ +I Sbjct: 4 DIKVTKRNGQQESIDMEKIHRVVHWASQDLKSVSVSQVEINAQLAFFDGIKTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + P+Y + AR + LR++ + P + E+ + + Sbjct: 64 KSAADLISTDIPDYQYLAARLSIFHLRKKAFKSFTPPP-----------FFEHIKKITDL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G+ + + + ++ L + + + RD F Y+ ++ L +Y + G E PQ Sbjct: 113 GIYDKDILNKYLKEEIEILGSYIDHWRDMNFSYVAVKQLEGKYLVQNRVTGEIYESPQFL 172 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M V M L + ++ FY+ +S F TP + T Q SSC L D Sbjct: 173 YMLVGMCLFQEYEVSKRMNTVKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIETDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL I G+G + +R +G+ I G G IPF K + + Sbjct: 233 DLDSISATAGVIVKYISQRAGIGINGGKIRAIGSPIRGGEATHTGCIPFYKHFHTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ NTG D R ++ L +R ++ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLKDGD 352 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 TLFSP + DL++ + + E Y + I+ I A L+ K + TG Sbjct: 353 ITLFSPHDTPDLYNAFFADQEEFKRLYHKYEQNTLIRKH-TIKARELFSKFIQERANTGR 411 Query: 559 PWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSS--------EETAVCNLGSINLLA 609 ++ D CN S + SNLC EITL + E A+C L ++NL A Sbjct: 412 IYLQNVDHCNTHSAFNAKQAPIKQSNLCMEITLPTKPLYSIQDEQGEIALCTLSAVNLGA 471 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + ++L + VR LD ++D + I+ A+ ++ R +G+G+ L Sbjct: 472 LDS-----LNELETLTDIIVRSLDCLLDYQDYPIKAAELASKNRRTLGIGVTNLAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 Y+ ++ + E + ++++ AS LA+E GA F + + QG+ PIDS Sbjct: 527 NGAKYSDGSGNQLIHTTFEALQYYSLKASNTLAKELGACPLFFQTQYSQGIMPIDSYKKD 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + + + + WD L++ + + G+RNS A+ P + + I + I+P + Sbjct: 587 IDAFCDFKL----KFDWDTLRQDITSKGLRNSTLTALMPCESSSQISNSTNGIEPPRGFV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K + G + + ++ D+K ++G + Sbjct: 643 SIKQSKDGILKQIVPDY-----ELLKNQYELLWDIKDNEGYLQ----------------- 680 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 QK++DQ+ S N + ++ K +A+ G+KT YY Sbjct: 681 ---------LCGIMQKFVDQSISTNTHYDPSQFEGNKVPIKLFLMDLLKAYKYGIKTLYY 731 Query: 903 --LRSRS 907 R Sbjct: 732 HTTRDGG 738 >gi|153814164|ref|ZP_01966832.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756] gi|145848560|gb|EDK25478.1| hypothetical protein RUMTOR_00373 [Ruminococcus torques ATCC 27756] Length = 761 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 240/786 (30%), Positives = 375/786 (47%), Gaps = 101/786 (12%) Query: 163 EMIVEEACSGL-----QDVSSKIVLSETYKN-MYDGLSESDLETALIFSSRTLIEKE-PN 215 + +E+ + + V S +L E + + + + ALI ++ L +E P Sbjct: 25 QERLEKLLYDIHTEFPEKVYSLELLFEKFSGFLKTDMDDGGRFDALIKAAAELTSQEAPR 84 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 + + L + ++ + ++ L E+G+ + E+ Sbjct: 85 WEMIAGWLLDFRFSEKLKEEEKSIGISDLYEKIVYL--------TEKGLYGSYIMENYSK 136 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRY-FLHINGSRIEMPQAFFMRVAMGLALKETE 334 ++V + + ER+ F Y GL +L RY +E PQ F+ +A+ LA+ E Sbjct: 137 EEIVEAESYICKERNRLFNYSGLDLLIKRYVISTHRHVPLESPQEMFLGIALHLAMNEKR 196 Query: 335 --KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 + EFY++LS +TPTL N+ QLSSCF+ TVPD L GIF ++ AM Sbjct: 197 KIRLMWVREFYDMLSKLEVTMATPTLANARKPFHQLSSCFIDTVPDSLKGIFRSIDNFAM 256 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 ++KY GG+G + VR G+ I G G + GVI ++++ NDTAVAV+Q G R GAV YL Sbjct: 257 VSKYGGGMGLYFGKVRASGSMIRGFEGAAGGVIRWVRIVNDTAVAVDQLGVRAGAVAVYL 316 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV--- 507 + WH D+ EFL LR N GD+R + HD+ A PDLF K +N W L P E+ Sbjct: 317 DAWHRDLPEFLQLRTNNGDERMKAHDVFPAVCYPDLFWKMAGENLDQDWYLMCPHEIMTV 376 Query: 508 --SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 L D +G+E+E Y + A + R + L R ++ ETG P+ +D Sbjct: 377 KEYCLEDSFGEEWERRYWDCVHDARIKK----RTVLLKDLIRLIIKSAAETGTPFAFNRD 432 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSE-----------------------ETAVCNL 602 N +P H G+++ SNLCTEI N S+ E VCNL Sbjct: 433 TVNRANPNPHKGMIYCSNLCTEIAQNMSAISTVETKIQTEDKDTVVVNTTKAGEFVVCNL 492 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S++L N D + +RT VR LDNVID+N + + AK +NHT+R+IGLG+ G Sbjct: 493 ASLSLGNLPVN---DPAYVRKVVRTVVRALDNVIDLNFYPVPYAKITNHTYRSIGLGVSG 549 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 + L I + S E + D+ E I++ AI AS + A+E+G+Y F+GS W+ G Sbjct: 550 YHHMLAKNKIKWQSEEHLAFVDKLFEQINYAAIEASSDYAKEKGSYRYFEGSDWESG--- 606 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 W EL+++V GMRN+ +AIAPT++ + I G + I Sbjct: 607 -----------AYFEKRGYCSDEWKELREKVHRQGMRNAYLLAIAPTSSTSIIAGTTAGI 655 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 DP V+N + + E K +M+ + + + Sbjct: 656 DP----------------VMNKYFLEEKKG------SMLPRVA---------PDLSPETY 684 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTY 901 + A ID W + + RQ+ +DQAQS+N Y+ ++ + +++ +Y +AW G+KT Y Sbjct: 685 WYYINAHHIDQNWSVRACGVRQRHVDQAQSMNFYITNDYTMRQVLNLYLKAWECGVKTVY 744 Query: 902 YLRSRS 907 Y+RS+S Sbjct: 745 YVRSKS 750 >gi|284793845|pdb|2X1Y|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|284793846|pdb|2X1Y|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|284793847|pdb|2X1Y|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|294662301|pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|294662302|pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|294662303|pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution gi|303324818|pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of E. Coli gi|303324819|pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of E. Coli gi|303324820|pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of E. Coli Length = 761 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT Y Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYXQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|253687497|ref|YP_003016687.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754075|gb|ACT12151.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 761 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 194/790 (24%), Positives = 310/790 (39%), Gaps = 71/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 4 SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ +M L Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+ +K G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 AI----CNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D + K+L A+ G+KT YY Sbjct: 673 PSNDGYLQLVGLMQKFVDQAISSNTNYDPSRFPSGKVPMKQLLKDLVTAYKFGVKTLYYQ 732 Query: 904 RSRSATSVEK 913 +R + Sbjct: 733 NTRDGAEDVQ 742 >gi|238760195|ref|ZP_04621341.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] gi|238701574|gb|EEP94145.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] Length = 761 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 193/800 (24%), Positives = 316/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYSAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YMLVSACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDEFERLYTQYEQDDNIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIESLDDLEELAELAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNVLAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----SNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|238785707|ref|ZP_04629682.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] gi|238713392|gb|EEQ05429.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] Length = 761 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 193/800 (24%), Positives = 320/800 (40%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V +L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPELYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPTVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACPWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AISSEPL----HYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + +G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKLGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|259907949|ref|YP_002648305.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224963571|emb|CAX55061.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] Length = 761 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 308/782 (39%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A LQ+VS V ++ Y+G+ SD+ +I Sbjct: 4 SLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ M +E Sbjct: 64 KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ +++ + AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKLR----VKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIESLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ VK G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----CNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERL-----KDNYELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D K+L A+ G+KT YY Sbjct: 681 -------LVGVMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|293395207|ref|ZP_06639493.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] gi|291422384|gb|EFE95627.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] Length = 762 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 192/807 (23%), Positives = 317/807 (39%), Gaps = 71/807 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRKERINLDKIHRVIDWAAEGLNNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A + R +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLHA-----------HVVRMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYSTEEFEQMDSFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIR----QKRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I+ A + R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELATLAVRALDALLDYQDYPIKAAYRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LAQE+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETTYAQGILPIDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ + Sbjct: 586 DLDGI-CQEPLHYDWETLRKEIQETGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + +E+ Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + K+L + G+KT YY Sbjct: 673 PSNDGYLQLVGLMQKFIDQSISANTNYDPTRFAGGKVPMKQLLKDLLTTYKFGVKTLYYQ 732 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTD 930 +R + + + Sbjct: 733 NTRDGAEDVQEDMLPAKSADDDCESGA 759 >gi|167462364|ref|ZP_02327453.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus larvae subsp. larvae BRL-230010] Length = 729 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 236/750 (31%), Positives = 347/750 (46%), Gaps = 82/750 (10%) Query: 191 DGLSESDLETALIFSSRTLIEK--EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 D ++ + AL ++ P++ V A L L + K T ++ Sbjct: 14 DKITHEAILKALDNVGLPDSDEGTHPDWTYVAAYVFLRSLYKAA----SKNRVYDTSNKY 69 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Y +G+ + + ++ +++ ERD F Y+GL+ L DRY Sbjct: 70 GDFYA-LIKTLSTQGIYSPDILRLYSKDEINEFGREIEPERDKLFNYIGLKTLADRYLAK 128 Query: 309 -INGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 +G E+PQ FM +AM L + +E + E Y LS+ + +TPTL N+G Sbjct: 129 SYDGEVYELPQERFMIIAMTLMMYEREDHRADLVKEAYWALSNLYMTVATPTLANAGLSF 188 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 QLSSCF+ V D L I+ + + AML+K GG+G +R G+ I G G S GVI Sbjct: 189 GQLSSCFIDIVDDSLRSIYDSNTDVAMLSKNGGGIGVYVGKLRARGSDIKGFKGVSSGVI 248 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P+++ N+TAV+V+Q G+RKG++ YL+ WH D+ FLDL+ N GD+R R HD+ I Sbjct: 249 PWVRQLNNTAVSVDQLGRRKGSIAVYLDVWHKDILAFLDLKLNNGDERLRAHDIFPGVCI 308 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIAYE-----NYERQADRGEIKVFR 538 PDLFM+ V W LF P EV + ++F E E YE D E+ R Sbjct: 309 PDLFMESVRDRGDWYLFDPHEVRRIMGYSLEDFYDEEKGEGSFRQKYEECVDSPELAKVR 368 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--- 595 + A+ + + ++ ETG P++ ++D N +P H G+++ +NLCTEI N S Sbjct: 369 -VPAIEIMKSIMKSQLETGTPYMFYRDEANRMNPNGHAGMIYCTNLCTEIMQNMSPTVVV 427 Query: 596 -----------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + VCNL SINL Y+ L I VR+LDNVIDI Sbjct: 428 EEETDRDGNIITTKEPGDFVVCNLSSINLTRA-------YEVLDRLIPIQVRMLDNVIDI 480 Query: 639 NCHTIEKAKK--SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 N IE + +N +RAIGLG G+ L + I + S +A A+E E I++ I Sbjct: 481 NADKIEVQQAVVTNRKYRAIGLGTFGWHHLLAVRGIQWESEDAATFANELYEKIAYLTIR 540 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA E+G Y +++ S W G + I L M + W++L V Sbjct: 541 ASCMLAAEKGPYPAYEVSDWSTGDYFIKHGYARP---GFLEMKKGDLTDWEDLADNVTIY 597 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+RN MA+AP + A I G + IDP + Y + V +L +W Sbjct: 598 GIRNGYLMAVAPNMSTAKIGGSTDGIDPIFMRTYSEEKSKYKIPVTVP----DLTTSTMW 653 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++ +AF ID W I + RQ+ IDQ S NLY Sbjct: 654 ---------------------------LYKSAFNIDQTWSIRQNAARQRHIDQGVSFNLY 686 Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905 + K L ++ AW GLK+TYYLRS Sbjct: 687 VPNGVKAKDLLGLHMLAWESGLKSTYYLRS 716 >gi|292488818|ref|YP_003531705.1| ribonucleotide reductase subunit alpha [Erwinia amylovora CFBP1430] gi|292899969|ref|YP_003539338.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Erwinia amylovora ATCC 49946] gi|291199817|emb|CBJ46940.1| ribonucleoside-diphosphate reductase 1 alpha subunit [Erwinia amylovora ATCC 49946] gi|291554252|emb|CBA21548.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora CFBP1430] gi|312172976|emb|CBX81231.1| Ribonucleotide reductase, alpha subunit [Erwinia amylovora ATCC BAA-2158] Length = 761 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 196/782 (25%), Positives = 314/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A LQ+VS V ++ Y+G+ SD+ +I Sbjct: 4 SLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ M +E Sbjct: 64 KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFANQEEFERLYTQYEQDGSIRK----QRVKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 469 LGAIDSLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ VKT G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----CNTPLLLDWEALRESVKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEY-ELLKD----NYELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISSNTNYDPTRFANGKVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|283786034|ref|YP_003365899.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter rodentium ICC168] gi|282949488|emb|CBG89101.1| ribonucleoside-diphosphate reductase 1 alpha chain [Citrobacter rodentium ICC168] Length = 761 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 190/782 (24%), Positives = 314/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSISQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGEFEPPA----------LYDHVVKM-VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP ++ L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDMPGLYDAFFADQDEFERLYCQYEKDDSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLMDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 ++L AVR LD ++D + I A++ R +G+G++ + L Sbjct: 469 LGAINSLEELEDLAVLAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AIASEPL----HFDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILRQVVP----DYEHLG-NAYELLWEMPGNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + ++L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|170726651|ref|YP_001760677.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella woodyi ATCC 51908] gi|169811998|gb|ACA86582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shewanella woodyi ATCC 51908] Length = 762 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 187/785 (23%), Positives = 316/785 (40%), Gaps = 69/785 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ G + ++ ++ A L++VS V ++ +DG+ + +I Sbjct: 5 LKVTKRSGEREIIDLDKIHRVITWAAKDLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ LY +E G Sbjct: 65 AAADLISPESPDYQFLSARLAIFHLRKKAFGQFEPP----------KLYDHVVK-LVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + +L L + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDTHILQDYTREELDILDGYIDHWRDMDFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFAKYPQETRLDYIKRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATSSSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ I L +R+ Q Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQINKLMYQRLIQGGVI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V L+D + EF+ Y YE + +++ A L+ M+ T Sbjct: 354 SLFSPSDVPGLYDAFFEDQDEFDRLYLQYEADDSIRK----KQVKASELFGLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G ++ D CN SP + SNLC EI L + + G I L A N Sbjct: 410 GRIYVQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLDNVNDPNGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + +L AVR LDN++D + + A+KS+ R +G+G++ F + L + Sbjct: 470 GAIKNLAELEPLADLAVRALDNLLDYQDYPLIAAQKSSMNRRTLGIGVINFANYLAKEGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A I ++ E I ++ + AS+ LA+E+GA +F + + +GV PID+ + Sbjct: 530 RYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPAFHETTYSKGVLPIDTYKRALDN 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + W+ L++ + T G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 I----CDEPLHMDWETLRQDIVTHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 S+ G V + ++ + +DG + Sbjct: 646 SSKDGQLKQVVPDFEK-----YQYSYELLWQMPNNDGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + + L A+ +G+KT YY + Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPSRFDNQKVPMQVLLKDLLNAYKLGVKTLYYHNT 734 Query: 906 RSATS 910 R S Sbjct: 735 RDGAS 739 >gi|283806799|pdb|2X0Z|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|283806800|pdb|2X0Z|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|283806801|pdb|2X0Z|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|294662294|pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|294662295|pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|294662296|pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli gi|303324811|pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of E. Coli gi|303324812|pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of E. Coli gi|303324813|pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of E. Coli Length = 761 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 193/782 (24%), Positives = 314/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT Y Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLXYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|238797462|ref|ZP_04640961.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] gi|238718733|gb|EEQ10550.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] Length = 761 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 192/800 (24%), Positives = 318/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIRTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YMLVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAKEQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----SDEPLHYDWETLRKEIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|269139683|ref|YP_003296384.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda EIB202] gi|267985344|gb|ACY85173.1| ribonucleoside-diphosphate reductase, alpha subunit [Edwardsiella tarda EIB202] gi|304559552|gb|ADM42216.1| Ribonucleotide reductase of class Ia, alpha subunit [Edwardsiella tarda FL6-60] Length = 760 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 199/806 (24%), Positives = 312/806 (38%), Gaps = 71/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GLQ+VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVLDWAAEGLQNVSVSQVELRSHIQFYDGIRTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ LY R +E Sbjct: 64 KAAADLISRETPDYQYMAARLAIFHLRKKAYGQFEPP----------KLYDHVV-RLVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + L + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDAHLLTDFSRDEFEQMDGFLDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGL--ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YMLVAACLFSHYPRETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ Q Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNRLMYQRLIQGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +FE Y YE+ + RKI AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQNQFERLYVQYEQDSRIR----QRKIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + E G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLEDVNDETGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSQDDLEELATLAVRALDALLDYQDYPIPAARRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LAQE+GA F + + QG+ PIDS + Sbjct: 529 VRYSDGSANALTHRTFEAIQYYLLKASHRLAQEQGACPWFNETTYAQGILPIDSYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ + G+RNS ++ P+ T + I + I+P + + Sbjct: 589 AICSEPL----HYDWETLRAEIVRDGLRNSTLSSLMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ + +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWAMPGNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + K+L A+ +G+KT YY Sbjct: 681 -------LVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKLGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R E + + Sbjct: 734 TRD--GAEDMQEDLGSAQDDGCESGA 757 >gi|326783147|ref|YP_004323544.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] gi|310005565|gb|ADO99953.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] Length = 766 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 201/797 (25%), Positives = 331/797 (41%), Gaps = 80/797 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ +G S N ++ +VE AC GL VS+ V + +DG+ S ++ L+ Sbjct: 5 INVIKRNGDKDSLNLAKVHKMVEHACEGLAGVSASQVEISSGIQFFDGIKTSQIQEILVK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S+ LI E PNY V +R LL LR+ + P E+ + + Sbjct: 65 SASDLISLEYPNYQYVASRLLLFDLRKALNDHYEDHPPIL----------EHVKKCADLD 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 V + + E + + + + + Y RD+ F Y G++ + D+Y +G E PQ + Sbjct: 115 VYDKTIIEKYSEDEWKEIDSYIDYNRDYLFSYAGMRQVVDKYLVQDRSSGELYETPQQMY 174 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + +A+ L + ++ +YN +S TP + T Q +SC L V D Sbjct: 175 IMIALTLFQRYPKEKRLDYVRRYYNAISKHKINIPTPVMAGVRTPLRQFASCVLVDVDDT 234 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L IF + G+G + +RG+ + I G + GVIPFLK T Sbjct: 235 LDSIFSSDMAIGYYIAQRAGIGINAGRIRGINSKIRGGEVQHTGVIPFLKKFESTVRCCT 294 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R G+ + WH ++E+ L L+ N G + R ++ + I LF R N Sbjct: 295 QNGIRGGSATVHFPIWHQEIEDILVLKNNKGTEDNRVRKLDYSIQISKLFYARFMANQEI 354 Query: 500 TLFSPDEVSDLHDLYG-KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 +LFSP +V L+D +G +F+ Y YE E + I L+ +L ETG Sbjct: 355 SLFSPHDVPRLYDTFGTPDFDELYLQYEAD----ESVPRKTIGGYELFNNLLKERSETGR 410 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------ETAVCNLGSINLLAH 610 +I D CN S V+ SNLC EITL + E A+C L +IN+ Sbjct: 411 IYIMNIDHCNSHSSFLDK--VNMSNLCQEITLPTEPINHIDDPNGEIALCILSAINVGKI 468 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 +Q D AVR L+ +ID + +E AK+S R++G+G +G L Sbjct: 469 TQLDQMDE-----LCDLAVRALEELIDYMQYPVEAAKRSTLARRSLGIGYIGLAHYLAKN 523 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y PEA ++ + E +H + AS LA+E+GA F+ + + GV PID+ Sbjct: 524 GVKYDDPEAWKLVHDLTESFQYHLLKASNTLAKEKGACEGFRHTKYSNGVLPIDTYKKEV 583 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + W L+ + G+R+S A P+ + + + + I+P L Sbjct: 584 DEI----VPNKLNYDWHSLRTSILHHGLRHSTLSAQMPSESSSVVSNATNGIEPPRDFLS 639 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 VK + G + + + ++ D+K + G Sbjct: 640 VKKSKKGPLKQIVPGYPHLKS-----NYTLLWDMKDNGG--------------------- 673 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 I + QK+ DQA S N +E + + + G KT+YY Sbjct: 674 -----YIRITAVMQKFFDQAISGNWSYNPSNYPNNEVPMSVMTKDLIETYKYGWKTSYYQ 728 Query: 904 RS---RSATSVEKSTLK 917 + +S VE + + Sbjct: 729 NTYDAKSDLDVEDTKVS 745 >gi|310768142|gb|ADP13092.1| ribonucleotide-diphosphate reductase subunit alpha [Erwinia sp. Ejp617] Length = 761 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 192/782 (24%), Positives = 308/782 (39%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +++ A LQ+VS V ++ Y+G+ SD+ +I Sbjct: 4 SLLVTKRDGRTERIDLDKIHRVLDWAAEDLQNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ M +E Sbjct: 64 KSAADLISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDPHLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH +VE L L+ N G + R M+ + + +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ +++ + A+ L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKLR----VKAIDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIESLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I + + AS ELA E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L++ VK G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 AI----CNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERL-----KDNYELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D K+L A+ G+KT YY Sbjct: 681 -------LVGIMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|91793307|ref|YP_562958.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella denitrificans OS217] gi|91715309|gb|ABE55235.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella denitrificans OS217] Length = 762 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 187/805 (23%), Positives = 320/805 (39%), Gaps = 69/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G S + ++ ++ + GL++VS V ++ +DG+ + +I Sbjct: 5 MTVTKRSGERESIDLDKIHRVITWSTKGLKNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI + P+Y V AR + LR++ ++ R +E G Sbjct: 65 AAADLISPDSPDYQFVAARLAVFHLRKKAYGQFEPPSL-----------VDHVTRLVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + + +L + + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDKNILTDYTREELEVMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + K +FY+ S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFARYPAETRLKYIKDFYDATSNFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G D R ++ + L +R+ + Sbjct: 294 QGGVRGGAATLFYPIWHLEVESLLVLKNNRGVDDNRVRHLDYGVQLNKLMYQRLIKGQDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 +LFSP +V ++D + EFE Y YE+ + + AV L+ M+ T Sbjct: 354 SLFSPSDVPGMYDAFFADQVEFERLYLQYEQDTRIRR----KTLKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP + SNLC EI L + + G I L A N Sbjct: 410 GRIYIQNVDHCNTHSPFDPSVAPIKQSNLCLEIALPTKPLKNIDDPEGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L AVR LDN++D + I A+ + R +G+G++ F + L Sbjct: 470 GAIKDLSELEPLADLAVRALDNLLDYQDYPIISAQLGSMNRRTLGIGVINFANYLAKNGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + + E I F+ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 530 KYSDGSANNLTHRTFEAIQFYLLKASMNLAKEQGACPLFNETTYSKGILPIDTYKRDLDA 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + W+ L+K + G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 ICSEPL----HMDWEALRKDILEHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V +EL+ ++ ++ +DG + Sbjct: 646 ASKDGQLKQVVPDF-DELRD----SYELLWNMPNNDGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + + L A+ +G+KT YY + Sbjct: 681 ------LVGIMQKFVDQAISANTNYDPSRFEGRKVPMQTLLKDLLGAYKLGVKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930 R S + + V + + Sbjct: 735 RDGASDQFDEITAVIEEDDDCAGGA 759 >gi|50120138|ref|YP_049305.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49610664|emb|CAG74109.1| ribonucleoside-diphosphate reductase 1 alpha chain [Pectobacterium atrosepticum SCRI1043] Length = 761 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 195/790 (24%), Positives = 310/790 (39%), Gaps = 71/790 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 4 SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ M L Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTNMVEL----------- 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSAEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRMDYVKRFYDAISMFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGHIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGEE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ A + ++I A L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDASIRK----QRIKASELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I+ A++ R +G+G++ F L Sbjct: 469 LGAINSLDDLEDLATLAVRALDALLDYQDYPIKAAERGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LA+E+GA + F + + QG+ PID+ + Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACTWFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+K +K G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 AI----CNEPLHLDWETLRKDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + LK + +E+ Sbjct: 645 KASKDGILRQVVPEY--------------------------------ETLKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D K+L A+ G+KT YY Sbjct: 673 PNNDGYLQLVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQ 732 Query: 904 RSRSATSVEK 913 +R + Sbjct: 733 NTRDGAEDVQ 742 >gi|289526538|pdb|2X59|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|289526539|pdb|2X59|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|289526540|pdb|2X59|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|294662336|pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|294662337|pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli gi|294662338|pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli Length = 761 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 192/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNL EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT Y Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLXYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|317492552|ref|ZP_07950979.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919302|gb|EFV40634.1| ribonucleoside-diphosphate reductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 761 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 199/832 (23%), Positives = 317/832 (38%), Gaps = 98/832 (11%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVLDWAAEGLSNVSVSQVELRSHIQFYDGIRTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ LY +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPP----------KLYDHVVK-LVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTPEEFAQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPRDTRLSYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRLIKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + K + AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYMQYEADDSIRKQK----VKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQHVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 469 LGVINSLDDLEELAVLAVRALDALLDYQDYPILAAKRGAMGRRTLGIGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ +K G+RNS A+ P+ T + I + I+P ++ + Sbjct: 589 ----TICNEPLHYDWEALRNDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V D LK + +E+ Sbjct: 645 KASKDGILRQVVPEY--------------------------------DRLKNAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK+IDQ+ S N D + K+L A+ G KT YY Sbjct: 673 PNNDGYLQLVGLMQKFIDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGAKTLYYQ 732 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953 +R + + + D CE C Sbjct: 733 NTR-------------------------DGAEDVQDDLQATPEDDGCESGAC 759 >gi|168205190|ref|ZP_02631195.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens E str. JGS1987] gi|170663300|gb|EDT15983.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens E str. JGS1987] Length = 743 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216 LE + L D + + + + ++ E ++ + I S L + EP + Sbjct: 4 LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ A+ ++ L EV + + ++G+ + + ++ Sbjct: 64 QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ E + Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L + + Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EFL +R N GDDR++ HD+ PDLF K + W + P E+ Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603 N +P +H G+++SSNLCTEI N S+ E VCNL Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSTMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + +++ + T +R +DNVID+N +++ A+ +N +RA+GLG G+ Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W G Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + + W ELK+ + GMRN A+AP + A + G S+ +D Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ V L E + W Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A G+K+ YY Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727 Query: 903 LRSRSATSVE 912 +RS+S + E Sbjct: 728 VRSKSLSVDE 737 >gi|311032548|ref|ZP_07710638.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus sp. m3-13] Length = 755 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 242/759 (31%), Positives = 363/759 (47%), Gaps = 91/759 (11%) Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKP 240 ++ + ++ +L LI + +++ EP++ V +R L +KL++EV Sbjct: 44 ATKIIDKLLHHNNQDELTNQLILEALNHVDELEPDWTYVASRLLSQKLQQEVCRNR---- 99 Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 + + ++G+ + ++ ++ L + ++D+ F Y+GL+ Sbjct: 100 ---NISKPYTDFYSLIKGLTDQGIYQPQILKAYTHKEVNELEAIIDPQKDYLFTYIGLKT 156 Query: 301 LYDRYFLHINGSRI-EMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTL 358 L DRY + R+ E+PQ FM +AM L KE + E Y LS+ + +TPT Sbjct: 157 LSDRYLTRDHHKRLLELPQERFMIIAMTLMQKEENNRIHYVKEAYWALSNLYMTVATPTF 216 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N+G + QLSSCF+ TV D L GI+ + + A L+K GGLG +R G+ I G Sbjct: 217 ANAGKTYGQLSSCFIDTVDDSLQGIYDSNTDIANLSKSGGGLGVYLGKIRSRGSDIRGFK 276 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S GVIP++K N+TAV+V+Q G+RKGA+ YL+ WH D+ FLD + N GD+R RTHD Sbjct: 277 SVSSGVIPWMKQLNNTAVSVDQLGQRKGAISVYLDVWHKDIFSFLDSKLNNGDERMRTHD 336 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQ 528 + IPD+FM++V W LF P EV + F YE Sbjct: 337 LFNGVCIPDMFMEQVENRGDWYLFDPHEVRKLMGYSLEDFYDESVGAGSFRQKYEECINH 396 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + + K + A+ + + ++ ETG P++ ++D N +P H G+++ +NLCTEI Sbjct: 397 PELPKEK----VPAIEIMKAIMKGQLETGSPFMFYRDEVNRMNPNAHKGMIYCTNLCTEI 452 Query: 589 TLNSS-------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 T N S + VCNL SINL +L I V Sbjct: 453 TQNQSATITKKQYVEDGTIITVKTPGDFVVCNLSSINLARTIIAG-----QLERLIPIQV 507 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVI++N + +AK +N +RAIGLG G+ L + I + S EAV ADE E Sbjct: 508 RMLDNVIELNEIPVLQAKMTNEKYRAIGLGTFGWHHLLAIEGIKWESNEAVLYADELYEK 567 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I+FH I AS LA+E+G+Y +F+GS W G + +S+L W L Sbjct: 568 IAFHTIQASCLLAKEKGSYPAFEGSDWQTGDYFYKRNY-----------GASSKLDWITL 616 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 +K+V G+RN MA+AP AT + I G + SIDP + +Y + V + Sbjct: 617 QKQVANYGVRNGYLMAVAPNATTSIIAGSTASIDPIFLKVYSEEKKDYKIPVTAP----D 672 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L W + +A+ ID W I + RQK IDQ Sbjct: 673 LNAETTW---------------------------FYKSAYHIDQHWSIAQNAARQKHIDQ 705 Query: 870 AQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 A S NLY+ K L ++ AW LKTTYY+RS S Sbjct: 706 AISFNLYVTNTVKAKALLELHLDAWKQKLKTTYYVRSTS 744 >gi|169347148|ref|ZP_02866090.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens C str. JGS1495] gi|169296831|gb|EDS78960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens C str. JGS1495] Length = 743 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 227/790 (28%), Positives = 373/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216 LE + L D + + + + ++ E ++ + I S L + EP + Sbjct: 4 LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ A+ ++ L EV + + ++G+ + + ++ Sbjct: 64 QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ E + Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L + + Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EFL +R N GDDR++ HD+ PDLF K + W + P E+ Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603 N +P +H G+++SSNLCTEI N S E VCNL Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSVMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + +++ + T +R +DNVID+N +++ A+ +N +RA+GLG G+ Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W G Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + + W ELK+ + GMRN A+AP + A + G S+ +D Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ V L E + W Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A G+K+ YY Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727 Query: 903 LRSRSATSVE 912 +RS+S + E Sbjct: 728 VRSKSLSVDE 737 >gi|285803183|pdb|2X3S|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|285803184|pdb|2X3S|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|285803185|pdb|2X3S|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|294662329|pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|294662330|pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli gi|294662331|pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli Length = 761 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 192/782 (24%), Positives = 313/782 (40%), Gaps = 71/782 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNL EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ QK+IDQ+ S N D + ++L A+ G+KT Y Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLXYQN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|326796345|ref|YP_004314165.1| ribonucleoside-diphosphate reductase, subunit alpha [Marinomonas mediterranea MMB-1] gi|326547109|gb|ADZ92329.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinomonas mediterranea MMB-1] Length = 754 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 180/782 (23%), Positives = 312/782 (39%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +G + + +++ ++ A GL++VS V + ++G+ +D+ LI Sbjct: 3 TLTVTKRNGVTENIDLEKIHKVITWAAEGLENVSVSQVELKAQIQFFEGIRTTDIHETLI 62 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + P+Y + AR + LR++ LY E+ C +E+ Sbjct: 63 KSAADLISENTPDYQYLAARLAIFHLRKKAFGQFEPP----------RLY-EHVCNLVEQ 111 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + +L + + + RD F Y ++ L +Y + G E PQ Sbjct: 112 NRYDAHILNDYSKEELDQINEFIDHSRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQFI 171 Query: 321 FMRVAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S F TP + T Q SSC L D Sbjct: 172 YILVAACLFANYEKETRLDLIKRFYDAVSQFKLSLPTPIMSGIRTPTRQFSSCVLIECGD 231 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 232 SLDSINATSSAVVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 291 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ + Sbjct: 292 SQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLIKGGN 351 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + ++F+ Y YE+ + + A L+ + Sbjct: 352 ITLFSPSDVPGLYDAFFADQEKFDRLYTMYEQDDSIRKS----TVKASELFTLFASERAS 407 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L + E G I L Sbjct: 408 TGRIYLQNVDHCNTHSPFDPKVAPVKQSNLCLEIALPTKPLENVSDPDGEIALCTLSAFN 467 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L +R LD ++D + I A+ + R +G+G++ + L Sbjct: 468 LGALENLDELEELSELIIRALDALLDYQNYPIPAAQNATELRRTLGVGVINYAYYLAKNG 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A E+ ++ E I + + AS +L++E G +F + + +G+ PID+ + Sbjct: 528 VRYSDGSANELTHKTFEAIQYFLLKASNKLSKEFGPCKAFNETTYSKGILPIDTY----K 583 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ W+ L+K + G+RNS A+ P+ T + I + I+P + V Sbjct: 584 EEVNKIVSSELYYDWESLRKDIVEYGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSV 643 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ + +DG + Sbjct: 644 KASKDGILKQVVPEYER-LKDQ----YELLWSIPSNDGYLQ------------------- 679 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQ+ S N D + K + A+ +G+KT YY Sbjct: 680 -------LVGIMQKFVDQSISANTNYDPQKFESQKVPMKVILKDLLTAYKLGVKTLYYHN 732 Query: 905 SR 906 +R Sbjct: 733 TR 734 >gi|110800461|ref|YP_697051.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium perfringens ATCC 13124] gi|168216674|ref|ZP_02642299.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens NCTC 8239] gi|110675108|gb|ABG84095.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens ATCC 13124] gi|182381125|gb|EDT78604.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens NCTC 8239] Length = 743 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216 LE + L D + + + + ++ E ++ + I S L + EP + Sbjct: 4 LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ A+ ++ L EV + + ++G+ + + ++ Sbjct: 64 QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ E + Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L + + Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EFL +R N GDDR++ HD+ PDLF K + W + P E+ Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603 N +P +H G+++SSNLCTEI N S+ E VCNL Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + +++ + T +R +DNVID+N +++ A+ +N +RA+GLG G+ Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W G Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + + W ELK+ + GMRN A+AP + A + G S+ +D Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ V L E + W Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A G+K+ YY Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727 Query: 903 LRSRSATSVE 912 +RS+S + E Sbjct: 728 VRSKSLSVDE 737 >gi|123441722|ref|YP_001005706.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088683|emb|CAL11485.1| ribonucleoside-diphosphate reductase 1 alpha chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 761 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 194/800 (24%), Positives = 319/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS ELA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNELAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|227328223|ref|ZP_03832247.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 761 Score = 439 bits (1129), Expect = e-120, Method: Composition-based stats. Identities = 195/789 (24%), Positives = 309/789 (39%), Gaps = 69/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ ++ A GL +VS V ++ YD + SD+ +I Sbjct: 4 SLLVTKRDGSKEKINLDKIHRVITWAAEGLHNVSVSQVELRSHIQFYDSIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI +E P+Y + AR + LR++ +M L Sbjct: 64 KAAADLISRESPDYQYLAARLAIFHLRKKAYGQFEPPALLTHVTKMVEL----------- 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSPEEFAQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGDIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPRETRLDYVKRFYDAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHLDYGVQLNKLMYQRLVKGEE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + ++I A L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVQYEQDDSIRK----QRIKAGELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAINSLDDLEELATLAVRALDALLDYQDYPITAAERGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANGLTHKTFEAIQYYLLKASNVLAREQGACPWFNETTYSQGILPIDTYKRDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+ +K G+RNS A+ P+ T + I + I+P ++ V Sbjct: 589 AI----CNEPLHLDWEALRNDIKEYGLRNSTLSALMPSETSSQISNATNGIEPPRGHISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEY-ETLKD----SYELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D K+L A+ G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISSNTNYDPSRFPSGRVPMKQLLKDLVTAYKFGVKTLYYQN 733 Query: 905 SRSATSVEK 913 +R + Sbjct: 734 TRDGAEDVQ 742 >gi|303253583|ref|ZP_07339721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247986|ref|ZP_07530016.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647503|gb|EFL77721.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855501|gb|EFM87674.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 756 Score = 439 bits (1129), Expect = e-120, Method: Composition-based stats. Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ Sbjct: 2 QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI E P+Y + AR + LR++ + + + Sbjct: 62 IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 G + L + + + L + RD F Y ++ L +Y + G E Q Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAIKQLEGKYLVQNRVTGEIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ V+ L + + FY+ S+F TP + T Q SSC L Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + ++FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 TG +I D CN V + SNLC EI L + G I L Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIRQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+ VR LD ++D + ++ AK + R++G+G++ + L Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ PIDS Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFNETSYAQGILPIDSYKKE 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ +K G+RNS ++ P+ T + I + I+P + Sbjct: 587 LDN----LTTEPLHYDWESLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K++ G V + L+ + + Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670 Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901 +I D ++ QK+IDQA S N D + K+L A+ GLKT Y Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730 Query: 902 YLRSRSATSVEKSTLKG 918 Y +R + L Sbjct: 731 YQNTRDGAEDAQEDLND 747 Score = 41.0 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 K + V KRNG FD KI R I A V S +Q T + Sbjct: 3 KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62 Query: 84 LQ 85 ++ Sbjct: 63 IK 64 >gi|18311343|ref|NP_563277.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium perfringens str. 13] gi|18146027|dbj|BAB82067.1| ribonucleoside-diphosphate reductase alpha subunit [Clostridium perfringens str. 13] Length = 743 Score = 439 bits (1129), Expect = e-120, Method: Composition-based stats. Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216 LE + L D + + + + ++ E ++ + I S L + EP + Sbjct: 4 LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ A+ ++ L EV + + ++G+ + + ++ Sbjct: 64 QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ E + Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L + + Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EFL +R N GDDR++ HD+ PDLF K + W + P E+ Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGICYPDLFWKLAENDIDANWYMMCPHEIKTVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603 N +P +H G+++SSNLCTEI N S+ E VCNL Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + +++ + T +R +DNVID+N +++ A+ +N +RA+GLG G+ Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W G Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + + W ELK+ + GMRN A+AP + A + G S+ +D Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ V L E + W Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A G+K+ YY Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727 Query: 903 LRSRSATSVE 912 +RS+S + E Sbjct: 728 VRSKSLSVDE 737 >gi|127512874|ref|YP_001094071.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella loihica PV-4] gi|126638169|gb|ABO23812.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Shewanella loihica PV-4] Length = 762 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 195/802 (24%), Positives = 324/802 (40%), Gaps = 87/802 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G + + ++ ++ A GL +VS V ++ YDG+ + +I Sbjct: 5 MQVTKRSGERETIDLDKIHRVITWAAKGLNNVSVSEVELRSHLQFYDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ LY +E G Sbjct: 65 AAADLISPESPDYQFLSARLAIFHLRKKAFGQFEPP----------SLYDHVVK-LVELG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + +L L + + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDTHILNDYSREELDTLDSYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEVYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + +FY+ S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFANYPRETRLQYVKDFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ Q Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIQGGMI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + EFE Y YE+ E ++I AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFEDQAEFERLYVKYEQD----ESIRKKQIKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSS--------EETAVCNLGSINL 607 G +I D CN SP V SNLC EI L + E A+C L ++NL Sbjct: 410 GRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTKPLNNIDDPDGEIALCTLSALNL 469 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 A D+L S AVR LD+++D + I A K + R +G+G++ F + L Sbjct: 470 GAIKK-----LDELESLADLAVRALDSLLDYQDYPIVSAHKGSMNRRTLGIGVINFANYL 524 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ A I ++ E I ++ + AS+ LA+E+GA +F + + +G+ PID+ Sbjct: 525 AKEGVRYSDGSANGITHKTFEAIQYYLLKASMNLAKEQGACPAFHETNYAKGILPIDTYK 584 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + + W+ L+ +KT G+RNS A+ P+ T + I + I+P Sbjct: 585 RDLDKI----CDEPLHMDWETLRGEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VK++ G V + ++ + ++G + Sbjct: 641 LISVKASKDGQLKQVVPDFEK-----YQYSYELLWQMPGNEGYLQ--------------- 680 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 QK++DQ+ S N + + L A+ G+KT Sbjct: 681 -----------LVGLMQKFVDQSISANTNYDPSRFPGAKVPMQVLLKDLLTAYKYGVKTL 729 Query: 901 YY--LRSRS------ATSVEKS 914 YY R + TS+EK Sbjct: 730 YYHNTRDGASDKYDDITSIEKE 751 >gi|325261083|ref|ZP_08127821.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. D5] gi|324032537|gb|EGB93814.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium sp. D5] Length = 763 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 239/830 (28%), Positives = 383/830 (46%), Gaps = 117/830 (14%) Query: 116 REYVLYREERSDVRAAQSHSKSDAPIAP----KLKIMMDDGTLISFNSKRLEMIVEEACS 171 + Y+LYRE R+ R ++ + P L + D + + ++L + Sbjct: 2 KSYILYRERRARRRYSRQRIADEFQAVPGLVGVLTSIQKDFSQEEYELEQLSARFQAF-- 59 Query: 172 GLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRR 230 + GL++ + L+ + L +E P + + AR + + Sbjct: 60 -----------------LSPGLTDMEKLAVLVKACAELTTQEAPKWEMIAARVRMLSFQI 102 Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 ++ + + + + E+G+ + E ++ L +R+ Sbjct: 103 QLNVQMEAFHIHSFYEK--------ISWLTEQGLYGNYILEHYTQAEIEEFGTWLCAKRN 154 Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSS 348 F + L++L RY + G +E PQ FM +AM LA+KE + + FY++LS+ Sbjct: 155 DLFTFSSLELLLGRYTICGRAGEPLETPQEMFMGIAMHLAMKEKQDRSAWVRRFYDMLST 214 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 +TPTL N+ + QLSSCF+ TVPD L GI+ ++ A ++KY GG+G + VR Sbjct: 215 LKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDNFAKVSKYGGGMGMYFGKVR 274 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+ I G G + GVI ++++ANDTAVAV+Q G R+GAV YL+ WH D+ EFL+LR N Sbjct: 275 ASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGVRQGAVAVYLDVWHRDLPEFLNLRTN 334 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV-----SDLHDLYGKEFEIA 521 GD+R + HD+ A PD F K+ + W L P E+ L D +G+ +E Sbjct: 335 NGDERMKAHDVFPAVCYPDYFWKQARDHIDGDWYLMCPHEILTIKGYALEDSFGEAWEEK 394 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y + R E R I + R ++ ETG P+ +D N +P H GV++ Sbjct: 395 YLDCVRD----ERIRKRVIPIKDVLRLIIRSAVETGTPFAFNRDTVNKANPNGHKGVIYC 450 Query: 582 SNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQFDY 618 SNLCTEI N S E VCNL S++L DY Sbjct: 451 SNLCTEIAQNMSAIELEEQRTEEVDGETVVVTVTKPGEFVVCNLASLSLGHIDVE---DY 507 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 ++L+ +AVR LDNVID+N + A+ +N +R +GLG+ G+ L I + S E Sbjct: 508 NELSYITESAVRALDNVIDLNFFPVPYARINNQRYRPVGLGVSGYHHMLAKYGIRWESQE 567 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 ++ A++ I + A++AS +A+E+G+Y+ F+GS W G + Sbjct: 568 HLDFAEKVFSDIHYAAVNASCSIAEEKGSYAYFEGSAWQTG--------------EYFRQ 613 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 W++L RV G+RN +A APT++ + I G + +DP +++ +G Sbjct: 614 RNLVDDRWEQLAGRVAAFGLRNGYLLAAAPTSSTSIIAGTTAGLDPVMNRYFLEEKKNGL 673 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 V +L W + A ID W + Sbjct: 674 MPRVAP----DLSMETFW---------------------------YYKNAHLIDQTWSVR 702 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + RQ+ IDQAQS+NLY+ +E + + + +Y QAW G+KT YY+RSRS Sbjct: 703 ACGIRQRHIDQAQSMNLYITNEYTFRGVLNLYLQAWEEGVKTIYYIRSRS 752 >gi|332993181|gb|AEF03236.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas sp. SN2] Length = 773 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 191/832 (22%), Positives = 318/832 (38%), Gaps = 84/832 (10%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 L + +G S + +++ +V A GL++VS V + +DG++ S++ L Sbjct: 3 NSLSVTKRNGEQESIDLEKIHKVVTWAAKGLENVSVSQVEIKAQIQFFDGINTSEIHETL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI + P+Y + AR + LR++ E+ +E Sbjct: 63 IKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------FEHVTNMVE 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 112 MGKYDKHLIEDYTAEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L + + FY+ S+F TP + T Q SSC L Sbjct: 172 LYILVAACLFANYPKDTRMSYIRRFYDAASTFKLSLPTPIMSGVRTPTRQFSSCVLIETG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ ++ Sbjct: 292 CSQGGVRGGAATLFYPLWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKDD 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + ++FE Y YE + + ++I A+ L+ + Sbjct: 352 YISLFSPSDVPGLYDAFFADQEKFERLYVQYENDDNIRK----KRIKAMELFSLFMQERA 407 Query: 555 ETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG ++ D CN V V SNLC EI L + + G I L Sbjct: 408 STGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDEEGEIALCTLSAF 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D+ AVR LDN++D + + A + R +G+G++ F L Sbjct: 468 NLGAIKSLDEFEELSDLAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + + E + ++ + AS LA+E+GA F + + QG+ PIDS Sbjct: 528 GVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDSYKKDL 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + N WD L++ +KT G+RNS A+ P+ T + I + ++P + Sbjct: 588 DGV----CNEPLHYDWDALREEIKTHGLRNSTLSALMPSETSSQISNATNGVEPPRGFIS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +KS+ G V ++ D+ +DG + Sbjct: 644 IKSSKDGVLKQVVPEYERL-----RDQYELLWDIPSNDGYLQ------------------ 680 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 QK+IDQ S N ++ K L + +G+KT YY Sbjct: 681 --------LVGIMQKFIDQTISANTNYDPSRYDGNKVPMKLLLKDLLTTYKLGVKTLYYH 732 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE--VC 953 +R DG +A + + D +C C Sbjct: 733 NTR-------------DGATDASALDVKANEPLPRQEEVVIEEDDDCAGGAC 771 >gi|307250238|ref|ZP_07532193.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857724|gb|EFM89825.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 756 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 179/793 (22%), Positives = 307/793 (38%), Gaps = 72/793 (9%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ Sbjct: 2 QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI E P+Y + AR + LR++ + + + Sbjct: 62 IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 G + L + + + L + RD F Y ++ L +Y + G E Q Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ V+ L + + FY+ S+F TP + T Q SSC L Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + ++FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 TG +I D CN V + SNLC EI L + G I L Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+ VR LD ++D + ++ AK + R++G+G++ + L Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ PIDS Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ +K G+RNS ++ P+ T + I + I+P + Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K++ G V + L+ + + Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670 Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901 +I D ++ QK+IDQA S N D + K+L A+ GLKT Y Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730 Query: 902 YLRSR-SATSVEK 913 Y +R A ++ Sbjct: 731 YQNTRDGAEDAQQ 743 Score = 41.0 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 K + V KRNG FD KI R I A V S +Q T + Sbjct: 3 KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62 Query: 84 LQ 85 ++ Sbjct: 63 IK 64 >gi|110802610|ref|YP_699621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium perfringens SM101] gi|110683111|gb|ABG86481.1| ribonucleoside-diphosphate reductase, alpha chain [Clostridium perfringens SM101] Length = 743 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 226/787 (28%), Positives = 374/787 (47%), Gaps = 95/787 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216 LE + L D + + + + ++ E ++ + I S L + EP + Sbjct: 4 LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMEEKEIIKSFIQVSLELTSQVEPRW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ A+ ++ L EV T + + ++G+ + + ++ Sbjct: 64 QEIAAKLYVKNLYEEVRTNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ E + Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L + + Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EFL ++ N GDDR++ HD+ PDLF K + W + P E+ Sbjct: 300 AWHKDLPEFLQIKTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603 N +P +H G+++SSNLCTEI N S+ E VCNL Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDVVVIEKTKPGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + +++ + T +R +DNVID+N +++ A+ +N +RA+GLG G+ Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W G Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + + W ELK+ + GMRN A+AP + A + G S+ +D Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ V L E + W Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A G+K+ YY Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727 Query: 903 LRSRSAT 909 +RS+S + Sbjct: 728 VRSKSLS 734 >gi|88859280|ref|ZP_01133920.1| ribonucleotide-diphosphate reductase alpha subunit [Pseudoalteromonas tunicata D2] gi|88818297|gb|EAR28112.1| ribonucleotide-diphosphate reductase alpha subunit [Pseudoalteromonas tunicata D2] Length = 760 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 196/797 (24%), Positives = 319/797 (40%), Gaps = 70/797 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +L + DG + ++ ++E A GL +VS V +++ YDG+ D+ +I Sbjct: 4 QLSVSKRDGRKELLDLDKIHRVIEWAAKGLNNVSVSQVELKSHIQFYDGIRTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ I KE P+Y + AR + LR++ LY +E+ Sbjct: 64 KAAADQISKESPDYQFLAARLAIFHLRKKAYGQFEPP----------RLYDHVVKM-VED 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 L + L L + RD F Y ++ L +Y + G E Q Sbjct: 113 NRYDAHLLADYTQAEFEQLDEVLDHNRDLTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L ++ + FY+ +S F TP + T Q SSC L D Sbjct: 173 YILVAASLFSKYPQSIRLDYIKRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAYHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G D R ++ + R+ ++ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVENLLVLKNNRGVDDNRVRHLDYGVQFNKVMYSRLIKDDY 352 Query: 499 WTLFSPDEVSDLHDLYGKE---FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + ++ FE Y YE+ + ++I A+ L+ + Sbjct: 353 ITLFSPSDVPGLYDAFFEDQALFESLYVQYEQDPAIRK----KRIKAIELFSMFVQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP + SNLC EI L + + + G I L Sbjct: 409 TGRIYLQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLKHVMDEEGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LDN++D + + AK + R +G+G++ + L Sbjct: 469 LGAIDSLDELEELAELAVRALDNLLDYQDYPVPAAKNATMNRRTLGVGVVNYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + QG+ PID+ + Sbjct: 529 KKYSDGSANALTHQTFEAIQYYLMKASNELAKEKGACPKFHETTYSQGLMPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + RL WD L++ +K GMRNS A+ P+ T + I + I+P ++ V Sbjct: 589 QICSEPL----RLDWDGLRQSIKQYGMRNSTLSALMPSETSSQISNATNGIEPPRGHVSV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + ++ D+ +DG + Sbjct: 645 KASKDGILKQVVPEYER-LKDQ----YELLWDIPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ S N D + K L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQTVSANTNYDPGKFEGGKVPMKLLLKDLLTAYKFGVKTLYYHN 733 Query: 905 SR-SATSVEKSTLKGVD 920 +R A+ + + D Sbjct: 734 TRDGASDAQNEIVADAD 750 >gi|168213272|ref|ZP_02638897.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens CPE str. F4969] gi|182625796|ref|ZP_02953563.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens D str. JGS1721] gi|170715231|gb|EDT27413.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens CPE str. F4969] gi|177908952|gb|EDT71439.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens D str. JGS1721] Length = 743 Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats. Identities = 227/790 (28%), Positives = 374/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216 LE + L D + + + + ++ E ++ + I S L + EP + Sbjct: 4 LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ A+ ++ L EV + + ++G+ + + ++ Sbjct: 64 QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ E + Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L + + Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV---- 507 WH D+ EFL +R N GDDR++ HD+ PDLF K + W + P E+ Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIDANWYMMCPHEIKTVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603 N +P +H G+++SSNLCTEI N S+ E VCNL Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + +++ + T +R +DNVID+N +++ A+ +N +RA+GLG G+ Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W G Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + + W ELK+ + GMRN A+AP + A + G S+ +D Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ V L E + W Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A G+K+ YY Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727 Query: 903 LRSRSATSVE 912 +RS+S + E Sbjct: 728 VRSKSLSVDE 737 >gi|318606421|emb|CBY27919.1| ribonucleotide reductase of class Ia (aerobic),alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 761 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 194/800 (24%), Positives = 317/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ A + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|33519929|ref|NP_878761.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Blochmannia floridanus] gi|33504275|emb|CAD83167.1| ribonucleoside-diphosphate reductase 1 alpha chain [Candidatus Blochmannia floridanus] Length = 761 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 190/795 (23%), Positives = 322/795 (40%), Gaps = 69/795 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G N ++ ++ A GL+ +S V ++ Y+G+ SD++ +I Sbjct: 5 LFVTKRNGHQEPINLDKIHRVINWAAKGLEKISVSQVELRSHIQFYNGIKTSDIQETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y + AR + LR++ LY ++ G Sbjct: 65 AAADLISQEEPDYQYLAARLTVFHLRKKAYGQFEPP----------KLYNHVLH-LVKIG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + L + + + + RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDKNLVNDYNHKEFEEMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGKIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + +A L E + K FYN +S+F +TP + T Q SSC L D+ Sbjct: 174 ILIAACLFAKYPEHIRMKYIKNFYNAISTFKISLATPIMAGVRTPTRQFSSCVLIECDDN 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R +G+ I G IPF K + + Sbjct: 234 LDSINATSSAIVKYVAQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH+++E L L+ N G D R ++ I L +R+ Sbjct: 294 QGGVRGGAATLFYPIWHLEIENLLVLKNNRGIDSNRIRHLDYGVQINKLMYQRLITGKYI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V DL++ + +FE Y YE+ + RKI ++ L+ M+ T Sbjct: 354 TLFSPSDVPDLYENFFSDQNKFEYLYHKYEQNHNIR----HRKIKSIELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN + + SNLC EITL + G I L Sbjct: 410 GRIYIQNADHCNSHSPFNSALAPIRQSNLCLEITLPTKPLNNINDINGEIALCTLSALNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 N + L+ +R LD ++D + I A+ S R++G+G++ + L + Sbjct: 470 GNINNLQDLSELADLIIRALDALLDYQKYPIHAAQHSAINRRSLGIGVINYAYYLAKNKV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + + E I +H + AS LA+E+GA FK + + QG+ PID+ + Sbjct: 530 RYSDGSANTLTHRTFEAIQYHLLKASNNLAKEKGACIWFKDTTYSQGILPIDTYKKDLDD 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 +N W+ L+K +K G+RNS A+ P+ T + I + I+P L +K Sbjct: 590 I----INEPLHYDWEHLRKSIKQYGLRNSTVSALMPSETSSQIANATNGIEPPRGYLSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ +G V + ++ + + G Sbjct: 646 ASKNGILRQVIPDFKQLAS-----NYELLWQIPNNQG----------------------- 677 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ QK+IDQ+ S NL + K+L A+ +G+KT YY + Sbjct: 678 ---YLKLVGIMQKFIDQSISTNLNYDPNRFPGSKVPIKQLIADLLYAYKLGIKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVD 920 R +S + TL+ Sbjct: 735 RDGSSETQETLQYNQ 749 >gi|332162348|ref|YP_004298925.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666578|gb|ADZ43222.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864219|emb|CBX74277.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Yersinia enterocolitica W22703] Length = 761 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 194/800 (24%), Positives = 317/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ A + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDASIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|149911237|ref|ZP_01899860.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp. PE36] gi|149805691|gb|EDM65690.1| ribonucleotide-diphosphate reductase alpha subunit [Moritella sp. PE36] Length = 757 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 187/794 (23%), Positives = 316/794 (39%), Gaps = 70/794 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + G + + +++ +++ A GL +VS +V +++ YDG+ D+ +I Sbjct: 5 LLVTKRSGKQETIDLEKIHRVIKWAAKGLDNVSVSLVELKSHIQFYDGIRTEDIHETMIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI +E P+Y ++AR + LR++ ++ ++ Sbjct: 65 AAADLISEEAPDYQYLSARLAVFHLRKKAYGKFEPPAL-----------YDHVKFNVDAL 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L + + + + RD F Y ++ L +Y I G E PQ + Sbjct: 114 RYDAHLLADYTAEEFAEMDEFVDHWRDMNFSYGAIKQLEGKYLLQNRITGEIFESPQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L ++ + FY S+F TP + T Q SSC L D Sbjct: 174 ILVAASLFATYDKSVRMDYVRRFYEATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINAVSNSIVKYVSQRAGIGINAGRIRALGSSIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + L +R+ N Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQLNRLMYQRLIDNKDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + EFE Y YE+ + + I A L+ ++ T Sbjct: 354 TLFSPSDVDGLYDAFFQDQDEFERLYNLYEQDPSIRK----QTIKASELFALLMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP + SNLC EI L + + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAVAPIRQSNLCLEIALPTKPMQHPGDEDGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L + AVR LD+++D + + A+KS R++G+G++ + L + Sbjct: 470 GAIKDLSELENLSDLAVRALDSLLDYQDYPMPAAEKSTMARRSLGIGVINYAYYLAKNGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + + E I F+ + AS+ L++ERG +F + + QG+ PID+ + Sbjct: 530 KYSDGSANNLTHRTFEAIQFYLLKASMNLSKERGPCLAFHETTYAQGILPIDTYKSSLDE 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W+ L+ +K G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 I----CDEALHLDWETLRSEIKEHGLRNSTLTALMPSETSSQISNATNGIEPPRGLISIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V N ++ ++ + G + Sbjct: 646 ASKDGILKQVVPDYENL-----RDSYELLWNIPSNTGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + L A+ GLKT YY + Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPQRFPGQKVPMTTLLTDLMLAYKYGLKTLYYHNT 734 Query: 906 R-SATSVEKSTLKG 918 R A+ V+ Sbjct: 735 RDGASDVDVVKEDE 748 >gi|253989036|ref|YP_003040392.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780486|emb|CAQ83648.1| ribonucleoside-diphosphate reductase 1 subunit alpha [Photorhabdus asymbiotica] Length = 763 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 190/802 (23%), Positives = 313/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +V A GL++VS V + YD + SD+ +I Sbjct: 4 SLLVTKRDGHKERIDLDKIHRVVAWAADGLKNVSVSQVELRSQIQFYDSIKTSDIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI + P+Y + AR + LR++ ++ R +E Sbjct: 64 KAAADLISGDAPDYQYLAARLAIFNLRKKAYGQFEPPAL-----------YDHVSRMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLADYSKEEFEQMDEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSSYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R +G+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ ++ +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFTNQDEFERLYTKYEQDSNIR----QQRLKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPSVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 469 LGAIENLDELEELAILAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA FK + + QG+ PID+ + Sbjct: 529 ARYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSQGILPIDTYKKTLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ +K G+RNS ++ P+ T + I + I+P + + Sbjct: 589 ----TLTNEPLHYDWETLRSDIKQYGLRNSTLSSLMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V D ++ + +DG + Sbjct: 645 KASKDGILRQVVPEYERLKG-----DYELLWQMPGNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPARFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQDDLEEVVESADSD 755 >gi|46143781|ref|ZP_00134248.2| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208466|ref|YP_001053691.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae L20] gi|190150314|ref|YP_001968839.1| ribonucleoside-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251075|ref|ZP_07337261.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307245898|ref|ZP_07527983.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307252628|ref|ZP_07534521.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254870|ref|ZP_07536695.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259313|ref|ZP_07541042.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261474|ref|ZP_07543144.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263657|ref|ZP_07545268.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097258|gb|ABN74086.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915445|gb|ACE61697.1| ribonucleoside-diphosphate reductase alpha subunit [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302650085|gb|EFL80255.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853258|gb|EFM85478.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306859873|gb|EFM91893.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862167|gb|EFM94136.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866680|gb|EFM98539.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868826|gb|EFN00633.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871034|gb|EFN02767.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 756 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ Sbjct: 2 QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI E P+Y + AR + LR++ + + + Sbjct: 62 IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 G + L + + + L + RD F Y ++ L +Y + G E Q Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ V+ L + + FY+ S+F TP + T Q SSC L Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + ++FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 TG +I D CN V + SNLC EI L + G I L Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+ VR LD ++D + ++ AK + R++G+G++ + L Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ PIDS Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ +K G+RNS ++ P+ T + I + I+P + Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K++ G V + L+ + + Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670 Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901 +I D ++ QK+IDQA S N D + K+L A+ GLKT Y Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730 Query: 902 YLRSRSATSVEKSTLKG 918 Y +R + L Sbjct: 731 YQNTRDGAEDAQEDLND 747 Score = 41.0 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 K + V KRNG FD KI R I A V S +Q T + Sbjct: 3 KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62 Query: 84 LQ 85 ++ Sbjct: 63 IK 64 >gi|37526940|ref|NP_930284.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786373|emb|CAE15426.1| ribonucleoside-diphosphate reductase 1 alpha chain (ribonucleotide reductase 1) (B1 protein) (R1 protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 763 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 191/802 (23%), Positives = 318/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +V A GL++VS V + YDG+ SD+ +I Sbjct: 4 SLLVTKRDGHKERIDLDKIHRVVNWAADGLKNVSVSQVELRSQIQFYDGIKTSDIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 +S LI + P+Y + AR + LR++ LY ++ R ++ Sbjct: 64 KASADLISGDAPDYQYLAARLAIFNLRKKAYGQFEPP----------SLY-DHVSRMVKM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLADYSKEEFEQMNEFIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSGYPKETRLDYIRRFYDAASTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGEE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + EFE Y YE+ ++ +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDEFERLYTKYEQDSNIR----QQRLKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPLVAPVRQSNLCLEIALPTKPLNDINDKNGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 469 LGAIENLDELEELATLAVRALDALLDYQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+E+GA FK + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFKETTYSKGILPIDTY----K 584 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + N W+ L+ +K G+RNS ++ P+ T + I + I+P + + Sbjct: 585 KALDTLTNEPLHYDWEALRNEIKQYGLRNSTLSSLMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ + +DG + Sbjct: 645 KASKDGILRQVVPEYERLKGAY-----ELLWQMPGNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D + +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPTHFPSGKVPMNQLLKDLLLAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDIQDDLEEVVESADSD 755 >gi|255658864|ref|ZP_05404273.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella multacida DSM 20544] gi|260849269|gb|EEX69276.1| ribonucleoside-diphosphate reductase, alpha subunit [Mitsuokella multacida DSM 20544] Length = 755 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 228/766 (29%), Positives = 367/766 (47%), Gaps = 95/766 (12%) Query: 177 SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTT 235 ++ + + L ++ AL+ ++ L E P++ K+ AR R++ Sbjct: 39 DFSALVEKYEVFVKPSLQAAEKLQALVRAAVELASAEAPHWDKIAARLRYLVFARQLSED 98 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295 ++ +++ L +G+ + E + +L A + ER+ + Y Sbjct: 99 EARRGITNFVAKLRYL--------TAKGLYGSYILEHYTERELSAAARFMAEERNHLYTY 150 Query: 296 LGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352 GL +L RY +H +G +E PQ ++ +A+ LA+ E + FY++LS Sbjct: 151 AGLDLLLSRYVIHTHHGVALESPQEMYLGIALHLAMLELPAVRMDWVRRFYDMLSLQQVT 210 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPTL N+ + QLSSCF+ TVPD L GI+ +L A ++K+ GG+G + VR GA Sbjct: 211 MATPTLANARKPYHQLSSCFIDTVPDSLEGIYRSLDSFAKVSKWGGGMGLYFGKVRATGA 270 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I G G + GVI ++++ NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDD Sbjct: 271 AIRGFEGAAGGVIRWIRLVNDTAVAVDQLGVRQGACAVYLDAWHKDLPEFLQLRTNNGDD 330 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENY 525 R + HD+ A PDLF K ++ W L P E+ L D +G+E+E Y Sbjct: 331 RMKAHDIFPAVCYPDLFWKLAKEDLDAPWFLMDPHEIEMVMGYALEDFWGEEWEKRYRAC 390 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + R IS + R +L + ETG P+ ++D N +P G+++ SNLC Sbjct: 391 VAEPRIDK----RVISVKEIVRLILKSVVETGTPFAFYRDTVNRLNPNPQAGMIYCSNLC 446 Query: 586 TEITLNSSSEE-----------------------TAVCNLGSINLLAHFANNQFDYDKLA 622 TEI N S E VCNL S+NL + +++L Sbjct: 447 TEIAQNMSPVEAVSTEIRTKDGDTVVQVTTRPGDFVVCNLASLNLGRIDVTS---HEELR 503 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + +RTAVR LDNVID+N + AK +N +R+IGLG+ G+ L I + S E + Sbjct: 504 TVVRTAVRALDNVIDLNEAPLAYAKLTNAKYRSIGLGVSGYHHMLAKNAIRWESEEHLAF 563 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 D+ I++ AI AS +LA E+G Y F GS W G Sbjct: 564 VDDVFARINYAAIEASSDLAAEKGTYGCFAGSDWQTG--------------AYFKKRGYM 609 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W +L +V+ GMRN+ +A+APT++ + + G + +DP + +++ + Sbjct: 610 SEAWQKLAAKVRAQGMRNAYLLAVAPTSSTSILVGTTAGVDPIMKRFFLEEKKGAILPRI 669 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 +L + W + +A +D W + +A Sbjct: 670 AP----DLSMKTYW---------------------------YYKSAHTVDQNWSVRAAGV 698 Query: 863 RQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 RQ+ IDQAQS+NLY+ ++ + +++ +Y +A+ G+KT YY+RS+S Sbjct: 699 RQRHIDQAQSVNLYITNDFTFRQVLALYIRAYEEGVKTIYYVRSKS 744 >gi|93005950|ref|YP_580387.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter cryohalolentis K5] gi|92393628|gb|ABE74903.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychrobacter cryohalolentis K5] Length = 758 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 184/796 (23%), Positives = 323/796 (40%), Gaps = 69/796 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 K+++ DG L ++ ++E A GL +VS V +++ Y+G+ D+ + Sbjct: 5 DKIQVTKRDGRLEPIELDKIHKVIEWAAHGLDNVSVSQVELKSHIQFYEGIKTRDIHETI 64 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI ++ P+Y + AR + LR+ ++ + + Sbjct: 65 IKSAADLISEDTPDYQYLAARLAIFHLRKIAYNKFTPPHL-----------YDHVKKLTD 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + + + L L + RD Y ++ + +Y ++ + E PQ Sbjct: 114 AGKYDQHILADYSRAEFDELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +M V M L +++E+ FY+ S F TP + T Q SSC L Sbjct: 174 LYMLVGMCLFSRYEKSERMNYVKRFYDATSEFKISLPTPIMSGVRTPSRQFSSCVLIECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIKGQ 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP + L+D + +FE Y YE R+I A L+ M+ Sbjct: 354 DISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPAIR----SRQIPAADLFSLMMQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L + + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDATVAPIRQSNLCMEIALPTKPLDNINDEEGEIALCTLSAV 469 Query: 614 N---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + + VR LD ++D + ++ A+ + R +G+G++ + L Sbjct: 470 NLGKVENVSDIEEPAELIVRALDALLDYQDYPVKAAQNGSMRRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A+ + ++ E + F+ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 530 GVRYSDDSAIGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ + G+RNS A+ P+ T + I + I+P + Sbjct: 590 DKI----CQEPLHLDWETLRGEITEHGLRNSTLTALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V +N+LK + ++ + +DG Sbjct: 646 IKASKDGILKQVVPE-INKLKNQ----YELLWQMPNNDG--------------------- 679 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYL 903 ++ + QK++DQ+ S N D K L A+ +G+KT YY Sbjct: 680 -----YLKLVAVMQKFVDQSISANTNYDPVRYEGGRVPMKILLKDLLNAYKLGVKTLYYH 734 Query: 904 RSRSATSVEKSTLKGV 919 +R + ++ ++ Sbjct: 735 NTRDGANDAQADMEDD 750 >gi|165976418|ref|YP_001652011.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876519|gb|ABY69567.1| ribonucleoside-diphosphate reductase, alpha chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 756 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ Sbjct: 2 QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI E P+Y + AR + LR++ + + + Sbjct: 62 IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 G + L + + + L + RD F Y ++ L +Y + G E Q Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ V+ L + + FY+ S+F TP + T Q SSC L Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIIAGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSPIRQGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + ++FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 TG +I D CN V + SNLC EI L + G I L Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+ VR LD ++D + ++ AK + R++G+G++ + L Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ PIDS Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ +K G+RNS ++ P+ T + I + I+P + Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K++ G V + L+ + + Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670 Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901 +I D ++ QK+IDQA S N D + K+L A+ GLKT Y Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730 Query: 902 YLRSRSATSVEKSTLKG 918 Y +R + L Sbjct: 731 YQNTRDGAEDAQEDLND 747 Score = 43.7 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 3/62 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 K + V KRNG FD KI R I A V G S +Q T + Sbjct: 3 KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSGSQVELSAHIQFYQGIRTADIHETI 62 Query: 84 LQ 85 ++ Sbjct: 63 IK 64 >gi|168210335|ref|ZP_02635960.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens B str. ATCC 3626] gi|170711563|gb|EDT23745.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium perfringens B str. ATCC 3626] Length = 743 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 228/790 (28%), Positives = 375/790 (47%), Gaps = 95/790 (12%) Query: 162 LEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS----ESDLETALIFSSRTLIEK-EPNY 216 LE + L D + + + + ++ E ++ + I S L + EP + Sbjct: 4 LERYCAWSIEELNDETGLYTEEKLMVALDNIVTSKMGEKEIIKSFIQVSLELTSQVEPRW 63 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ A+ ++ L EV + + ++G+ + + ++ Sbjct: 64 QEIAAKLYVKNLYEEVRVNRGLEEGANPYDNFYGF----IKELTDKGLYGKYILDNYSKE 119 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE- 334 D+ L ++K ERDF F Y G+ +L RY + N +E+PQ FM +AM LA+ E + Sbjct: 120 DIEELEKEIKRERDFLFTYSGINLLAKRYLVQDFNRLPLELPQQMFMGIAMHLAIPEKKE 179 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + A FY++LSS +TPT+ N+ QLSSCF+ TV D L GI+ +L + + Sbjct: 180 KRLYWAKRFYDVLSSIKATMATPTMSNARKPFYQLSSCFIDTVDDSLAGIYKSLDNFSKV 239 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K+ GG+G VR LG+ I G G S G+IP++K+ NDTA+AV+Q G R G+V +L+ Sbjct: 240 SKFGGGMGIYMGKVRALGSAIRGFKGASGGIIPWIKLFNDTAIAVDQLGVRNGSVAIWLD 299 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV---- 507 WH D+ EFL +R N GDDR++ HD+ PDLF K + A W + P E+ Sbjct: 300 AWHKDLPEFLQIRTNNGDDRKKAHDIFPGLCYPDLFWKLAENDIEANWYMMCPHEIKTVK 359 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 L D YG+E+E Y + R +S + R ++ ETG P+ ++D Sbjct: 360 GYSLEDFYGEEWEKKYYECVED----DRIEKRVMSVKDIVRLIIKSAAETGTPFAFYRDT 415 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEE-----------------------TAVCNLG 603 N +P +H G+++SSNLCTEI N S+ E VCNL Sbjct: 416 VNKFNPNKHKGMIYSSNLCTEIMQNMSAMEIEQTEIKDENGDMVVIEKTKPGDFVVCNLS 475 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+ L + +++ + T +R +DNVID+N +++ A+ +N +RA+GLG G+ Sbjct: 476 SVVLGNVDVTSD---EEVEYVVETQIRAMDNVIDLNYYSVPFAEITNKKYRAVGLGTSGY 532 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L I + S E + D+ E I+F+AI AS+ +A+E+G+Y F+GS W G Sbjct: 533 HHMLVNNKIVWDSEEHLNFVDKVYERINFYAIKASLNIAKEKGSYPLFEGSDWSNG---- 588 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D + + W ELK+ + GMRN A+AP + A + G S+ +D Sbjct: 589 ----------DYFELREYNSPQWKELKEEIAKYGMRNGYLFAVAPNGSTATLAGTSEGVD 638 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P +++ V L E + W Sbjct: 639 PVMNRFWLEEKKGSITPKVAPGLCQE----NFW--------------------------- 667 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +A+ ++ + + + RQ+ IDQ QS NLY+ + + +++ +Y A G+K+ YY Sbjct: 668 YYVSAYNVNQEFTVRANGVRQRHIDQGQSFNLYITTDYTMRQIMNLYISACKNGVKSIYY 727 Query: 903 LRSRSATSVE 912 +RS+S + E Sbjct: 728 VRSKSLSVDE 737 >gi|194377960|dbj|BAG63343.1| unnamed protein product [Homo sapiens] Length = 454 Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 166/467 (35%), Positives = 263/467 (56%), Gaps = 18/467 (3%) Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 MKRV N W+L P+E L +++G+EFE Y +YE+Q +V + + A LW + Sbjct: 1 MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQ-----GRVRKVVKAQQLWYAI 55 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 + ETG P++ +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L Sbjct: 56 IESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNM 115 Query: 610 H-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + + + +D+ KLA + VR L+ +IDIN + + +A SN HR IG+G+ G A Sbjct: 116 YVTSEHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFI 175 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L+ P+ S EA + + E I + A+ AS +LA+E+G Y +++GS +G+ D + Sbjct: 176 LMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNV 235 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 T W LK+++ G+RNS +A PTA+ A I G ++SI+P N Sbjct: 236 TP----------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSN 285 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +Y + +SG+F +VN L+ +L +R LW E M + + +GSI +I IPDDLK+++ T Sbjct: 286 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTV 345 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRS 907 +EI +++ A+ R +IDQ+QSLN+++ EP+ KL ++ W GLKT YYLR+R Sbjct: 346 WEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRP 405 Query: 908 ATSVEKSTLKGVD-GKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 A + + TL V + ++ + S + EC +C Sbjct: 406 AANPIQFTLNKERLKDKEKVSKEEEEKERNTAAMVCSLENRDECLMC 452 >gi|71065820|ref|YP_264547.1| ribonucleotide-diphosphate reductase subunit alpha [Psychrobacter arcticus 273-4] gi|71038805|gb|AAZ19113.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychrobacter arcticus 273-4] Length = 758 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 184/797 (23%), Positives = 318/797 (39%), Gaps = 71/797 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 K+++ DG L + ++ ++E A L++VS V +++ Y+G+ D+ + Sbjct: 5 DKIQVTKRDGRLEPIDLDKIHKVIEWAAHNLENVSVSQVELKSHIQFYEGIKTRDIHETI 64 Query: 203 IFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI E P+Y + AR + LR+ ++ + + Sbjct: 65 IKSAADLISETTPDYQYLAARLAIFHLRKIAYNRFTPPHL-----------YDHVKKLTD 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + + L L + RD Y ++ + +Y ++ + E PQ Sbjct: 114 AGKYDAHILADYSRAEFDELEEYLDHWRDMNLAYAAVEQMAGKYLVQDRVSKTVFESPQF 173 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 +M V M L + E+ FY+ S F TP + T Q SSC L Sbjct: 174 LYMLVGMCLFASYDKAERLDYVKRFYDATSEFKISLPTPIMSGVRTPSRQFSSCVLIECG 233 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G + G IPF K+ Sbjct: 234 DSLDSINATTSAIVRYVSQRAGIGINAGRIRALGSPIRGGEAQHTGCIPFYKLFQTAVKC 293 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R M+ + R+ + Sbjct: 294 CSQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQLNKTMYTRLIKGQ 353 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP + L+D + +FE Y YE R+I A L+ M+ Sbjct: 354 DISLFSPGDTPGLYDAFFEDQDKFEELYTKYENDPTIR----SRQIPAADLFSLMMQERA 409 Query: 555 ETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 TG +I D CN SP V + SNLC EI L + + G I L A Sbjct: 410 STGRIYIQNVDHCNTHSPFDPTVAPIRQSNLCMEIALPTKPLDNINDEAGEIALCTLSAV 469 Query: 614 NQFDYDKLAST---IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + ++ VR LD ++D + ++ A+ + R +G+G++ + L Sbjct: 470 NLGKVEHVSDIEEPAELIVRALDALLDYQDYPVKAAQNGSMRRRTLGVGVINYAYYLAKN 529 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A+ + ++ E + F+ + AS +LA+E+GA +F + + QG+ PID+ Sbjct: 530 GVRYSDDSALGLTHQTFEALQFYLLKASNKLAKEQGACPAFNETTYSQGILPIDTYKKDL 589 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + L W+ L+ + T G+RNS A+ P+ T + I + I+P + Sbjct: 590 DKI----CQEPLHLDWETLRTEITTHGLRNSTLTALMPSETSSQIANATNGIEPPRGLVS 645 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K++ G V + D LK + ++ Sbjct: 646 IKASKDGILKQVVPEI--------------------------------DKLKDQYELLWQ 673 Query: 851 IDPMW-LIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYY 902 + ++ + QK++DQ+ S N D K L A+ MG+KT YY Sbjct: 674 MPNNDGYLKLVAVMQKFVDQSISANTNYDPVRYEGGRVPMKILLKDLLNAYKMGVKTLYY 733 Query: 903 LRSRSATSVEKSTLKGV 919 +R + ++ ++ Sbjct: 734 HNTRDGANDAQADMEDD 750 >gi|87120531|ref|ZP_01076425.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp. MED121] gi|86164174|gb|EAQ65445.1| ribonucleotide-diphosphate reductase alpha subunit [Marinomonas sp. MED121] Length = 755 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 186/782 (23%), Positives = 308/782 (39%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +G S N +++ +V A GL +VS V + ++G+ +D+ LI Sbjct: 3 TLTVTKRNGETESINLEKIHKVVTWAAEGLDNVSVSQVELKAQIQFFEGIKTTDIHETLI 62 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI ++ P+Y + AR + LR++ A + +E+ Sbjct: 63 KSAADLISEDTPDYQYMAARLAIFHLRKKAFGEFEPPHLLA-----------HVQNLVEQ 111 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + + + + L L + RD F Y ++ L +Y + G E PQ Sbjct: 112 KRYDAEILSAYSEAEFDQLNGFLDHSRDMNFSYAAVKQLEGKYLVQNRVTGDIYESPQFI 171 Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FY+ +S+F TP + T Q SSC L D Sbjct: 172 YLLVAACLFANYDASVRLDYIRRFYDAVSNFKISLPTPIMAGIRTPTRQFSSCVLIECGD 231 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 232 SLDSINATSSAIVKYVSQRAGIGINAGAIRALGSAIRGGEAFHTGCIPFYKHFQTAVKSC 291 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ Sbjct: 292 SQGGVRGGAATVFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNRLMYQRLISGGN 351 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE + + I A L+ + Sbjct: 352 ITLFSPSDVPGLYDAFFADQEEFERLYVQYEADDSVRK----QTIKASELFTLFASERAS 407 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L + + G I L Sbjct: 408 TGRIYLQNVDHCNTHSPFDPAVAPVKQSNLCLEIALPTKPLQHIYDEKGEIALCTLSAFN 467 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L VR LD+++D + + A+ + R +G+G++ + L Sbjct: 468 LGSLESLDELEELSDLIVRALDSLLDYQNYPVPAAQSATDLRRTLGVGVINYAYYLAKNG 527 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A E+ ++ E I ++ + AS L++ERGA +F + + +G+ PIDS + Sbjct: 528 VRYSDGSANELTHKTFEAIQYNLLKASNNLSKERGACQAFDETTYAKGILPIDSYKKEID 587 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K + G+RNS A+ P+ T + I + I+P + V Sbjct: 588 KVCSPEL----YYDWETLRKDIVEHGLRNSTLTALMPSETSSQIHNATNGIEPPRGFVSV 643 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ + +DG + Sbjct: 644 KASKDGILKQVVPEFERLKDEY-----ELLWSIPSNDGYLQ------------------- 679 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D K L A+ +G+KT YY Sbjct: 680 -------LVGIMQKFVDQAISANTNYDPAKFESSKVPMKLLLKDLLTAYKLGIKTLYYHN 732 Query: 905 SR 906 +R Sbjct: 733 TR 734 >gi|307257035|ref|ZP_07538811.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864519|gb|EFM96426.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 756 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 179/797 (22%), Positives = 306/797 (38%), Gaps = 71/797 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L + +G F+ ++ ++ A GL +VS V + Y G+ +D+ Sbjct: 2 QKTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI E P+Y + AR + LR++ + + + Sbjct: 62 IIKAAADLISTETPDYQYLAARLAVFHLRKKAYGDFTPPHLFT-----------HIKKLV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 G + L + + + L + RD F Y ++ L +Y + G E Q Sbjct: 111 ALGKYDKALLTDYNEQEWQLMNEFLVHSRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ V+ L + + FY+ S+F TP + T Q SSC L Sbjct: 171 FLYLLVSACLFSQYPKATRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I G+G + +R LG+ I G IPF K Sbjct: 231 GDSLDSINATSAAIIKYVSQRAGIGINAGAIRALGSSIRQGEAFHTGCIPFYKHFQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 291 SCSQGGVRGGAATVFYPLWHLEAESLLVLKNNRGVEDNRCRHMDYGVQLNKLMYQRLIKG 350 Query: 497 AGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 TLFSP +V L++ + ++FE Y YE+ + R + AV L+ ++ Sbjct: 351 GEITLFSPSDVPGLYEDFFADQEKFEQLYLQYEQDPSIRK----RSVKAVELFSLLMQER 406 Query: 554 FETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 TG +I D CN V + SNLC EI L + G I L Sbjct: 407 ASTGRIYIQNVDHCNTHSPFNPQVAPIKQSNLCLEIALPTKPLNDINDENGEIALCTLSA 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+ VR LD ++D + ++ AK + R++G+G++ + L Sbjct: 467 FNLGTLQNLDEFEPLADLVVRALDALLDYQDYPVKAAKHAALARRSLGIGVINYAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ A + + E + ++ + AS+ LA+E+GA F + + QG+ PIDS Sbjct: 527 NGVRYSDGSANALTHRTFEAMQYYLLKASLNLAKEQGACKLFDETSYAQGILPIDSYKKE 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ +K G+RNS ++ P+ T + I + I+P + Sbjct: 587 LDN----LTTEPLHYDWENLRAEIKQFGLRNSTLSSLMPSETSSQISNATNGIEPPRGYV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K++ G V + L+ + + Sbjct: 643 SIKASKDGILKQVVPEY--------------------------------EKLRSQYELLW 670 Query: 850 EI-DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTY 901 +I D ++ QK+IDQA S N D + K+L A+ GLKT Y Sbjct: 671 DIPDMSGYLQLVGIMQKFIDQAISANTNYDPQKFEDGKVPMKRLLADLLTAYKYGLKTLY 730 Query: 902 YLRSRSATSVEKSTLKG 918 Y +R + L Sbjct: 731 YQNTRDGAEDAQEDLND 747 Score = 41.0 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKA---FMAVEGKGASRSIRVQDIIKNLTEQTVTRL 83 K + V KRNG FD KI R I A V S +Q T + Sbjct: 3 KTLMVTKRNGKQEPFDLDKIHRVITWAAEGLHNVSVSQVELSAHIQFYQGIRTADIHETI 62 Query: 84 LQ 85 ++ Sbjct: 63 IK 64 >gi|238761951|ref|ZP_04622924.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] gi|238699679|gb|EEP92423.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] Length = 761 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 191/801 (23%), Positives = 317/801 (39%), Gaps = 71/801 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRMDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 ----TISDEPLHYDWETLRKDIQTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V LK + +E+ Sbjct: 645 KASKDGILRQVVPEYER--------------------------------LKDAYELLWEM 672 Query: 852 DPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYL 903 ++ QK++DQA S N D + K+L + G+KT YY Sbjct: 673 PNNDGYLQLVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQ 732 Query: 904 RSRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 733 NTRDGADDVQEDIQSQPGDDD 753 >gi|300723736|ref|YP_003713043.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus nematophila ATCC 19061] gi|297630260|emb|CBJ90911.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus nematophila ATCC 19061] Length = 763 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 194/802 (24%), Positives = 320/802 (39%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +V A GL++VS V + YDG+ SD+ +I Sbjct: 4 SLLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTSDIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI + P+Y + AR + LR++ LY ++ Sbjct: 64 KAAADLISGDAPDYQYLAARLAIFNLRKKAYGQFEPPA----------LYNHVVRM-VDL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSKEEFEQMDSFINHLRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSNYPKETRLDYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEGNRVRHMDYGVQVNKLMYERLIKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LFSP +V L+D + EFE Y YE ++ + +I AV L+ M+ Sbjct: 353 ISLFSPSDVPGLYDAFFADQDEFERLYTQYENDSNIRK----ERIRAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPLNNINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D +L AVR LD+++D + I A++ + R +G+G++ F L Sbjct: 469 LGAIEDLTELEELAELAVRALDSLLDYQDYPIIAAQQGSMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS ELA+ERGA F + + QG+ PID+ + Sbjct: 529 VRYSDSSANNLTHKTFEAIQYYLLKASNELAKERGACPWFGETTYSQGLLPIDTYKKTLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + + W+ L++ +K G+RNS A+ P+ T + I + I+P + V Sbjct: 589 ----TLSSEPLHMDWEALRRDIKQYGLRNSTLSALMPSETSSQISNATNGIEPPRGYISV 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V +L + ++ + ++G + Sbjct: 645 KASKDGILRQVVPDY--DLLKGAY---ELLWQMPSNNGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKDLLLAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755 >gi|289526572|pdb|2X5B|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|289526573|pdb|2X5B|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|289526574|pdb|2X5B|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|294662315|pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|294662316|pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli gi|294662317|pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli Length = 761 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 191/776 (24%), Positives = 311/776 (40%), Gaps = 71/776 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900 ++ QK+IDQ+ S N D + ++L A+ G+KT Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729 >gi|285803174|pdb|2X33|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|285803175|pdb|2X33|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|285803176|pdb|2X33|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|294662308|pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|294662309|pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli gi|294662310|pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli Length = 761 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 191/776 (24%), Positives = 311/776 (40%), Gaps = 71/776 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900 ++ QK+IDQ+ S N D + ++L A+ G+KT Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729 >gi|288562861|pdb|2X3I|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|288562862|pdb|2X3I|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|288562863|pdb|2X3I|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|294662322|pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|294662323|pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli gi|294662324|pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli Length = 761 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 191/776 (24%), Positives = 311/776 (40%), Gaps = 71/776 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 294 QGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ T Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP V SNLC EI L + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 470 GAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGK 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 530 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDT 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N W+ L++ +KT G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 IA----NEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + L + +E+ Sbjct: 646 ASKDGILRQVVPDY--------------------------------EHLHDAYELLWEMP 673 Query: 853 PMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900 ++ QK+IDQ+ S N D + ++L A+ G+KT Sbjct: 674 GNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTL 729 >gi|238751210|ref|ZP_04612704.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] gi|238710484|gb|EEQ02708.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] Length = 761 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 191/800 (23%), Positives = 316/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M ++ Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHMEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGDD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDDSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAKRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++ G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----SDEPLHYDWETLRKDIQEFGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKEAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGIKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|157375443|ref|YP_001474043.1| ribonucleotide-diphosphate reductase subunit alpha [Shewanella sediminis HAW-EB3] gi|157317817|gb|ABV36915.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3] Length = 762 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 186/805 (23%), Positives = 320/805 (39%), Gaps = 69/805 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 LK+ G + + ++ ++ A L +VS V ++ +DG+ + +I Sbjct: 5 LKVTKRSGERETIDLDKIHRVITWAAKDLNNVSVSEVELRSHLQFFDGIPTEAIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y ++AR + LR++ E+ + +E G Sbjct: 65 AAADLISPESPDYQFLSARLAIFHLRKKAFGQFEPPKL-----------YEHVVKLVEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 + +L L + + RD F Y ++ L +Y + E Q + Sbjct: 114 KYDAHILHDYSREELDTLDGYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 174 ILVAACLFAKYPKETRLTYIKNFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G +PF K + + Sbjct: 234 LDSINATASSIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCLPFFKYFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ + + +R+ + Sbjct: 294 QGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRQLDYGVQLNKVMYQRLIKGGMI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L+D + EFE Y YE+ + ++ A L+ ++ T Sbjct: 354 TLFSPSDVPGLYDAFFEDQDEFERLYHQYEQDDSVRKT----QVKAAELFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN SP + SNLC EI L + G I L A N Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLNNIDDPEGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L AVR LDN++D + I A+KS+ R +G+G++ F + L + Sbjct: 470 GAIKDLSELEPLADLAVRALDNLLDYQDYPITAAQKSSMNRRTLGIGVINFANYLAKEGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A I ++ E I ++ + AS+ LA+E+GA SF + + +G+ PID+ + Sbjct: 530 RYSDGSANNITHKTFEAIQYYLLKASMNLAKEQGACPSFHETSYSKGILPIDTYKRHLDQ 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + W+ L++ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 I----CDEPLHMDWETLRQDIVQHGLRNSTLSALMPSETSSQISNATNGIEPPRGLISVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 S+ G V + + ++ + ++G + Sbjct: 646 SSKDGQLKQVVPDF-----DKYQYSYELLWQMPNNEGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N D + + L A+ +G+KT YY + Sbjct: 681 ------LVGLMQKFVDQAISANTNYDPSRFEGQKVPMQVLLKDLLNAYKLGVKTLYYHNT 734 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTD 930 R + S + V+ + Sbjct: 735 RDGATDSHSDIVSVEKEDEGCEGGA 759 >gi|238794994|ref|ZP_04638590.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] gi|238725697|gb|EEQ17255.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] Length = 761 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 191/800 (23%), Positives = 316/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ ++ + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKL-----------FDHVSKMVEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEELAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N W+ L+ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 ----TISNEPLHYDWETLRNDIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|238788615|ref|ZP_04632407.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] gi|238723210|gb|EEQ14858.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] Length = 761 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 192/800 (24%), Positives = 317/800 (39%), Gaps = 69/800 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG+ N ++ +++ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGSKERINLDKIHRVIDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ A +M +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPKLFAHVTKM-----------VEM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + RD F Y ++ L +Y ++G E Q Sbjct: 113 GKYDKHLLEDYTAEEFEQMDTFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVSACLFSNYPRETRLDYIKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ + + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDSSIRK----QRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPKIAPVRQSNLCLEIALPTKPLNDINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D L AVR LD ++D + I A++ R +G+G++ F L Sbjct: 469 LGAIDSLDDLEDLAVLAVRALDALLDYQDYPIAAAQRGAMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLKASNALAREQGACQWFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+K ++T G+RNS A+ P+ T + I + I+P + + Sbjct: 589 ----TISDEPLHYDWETLRKDIQTYGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ D+ +DG + Sbjct: 645 KASKDGILRQVVPEYERLKDAY-----ELLWDMPNNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K+L + G+KT YY Sbjct: 681 -------LVGLMQKFVDQAISANTNYDPTRFPSGKVPMKQLLKDLLTTYKFGVKTLYYQN 733 Query: 905 SRSATSVEKSTLKGVDGKLN 924 +R + ++ G + Sbjct: 734 TRDGADDVQEDIQSQPGDDD 753 >gi|254517516|ref|ZP_05129572.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp. 7_2_43FAA] gi|226911265|gb|EEH96466.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium sp. 7_2_43FAA] Length = 743 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 230/767 (29%), Positives = 369/767 (48%), Gaps = 91/767 (11%) Query: 178 SKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTV 236 + +L + + + ++ ++I + L EP + AR + KL ++ Sbjct: 24 VERLLEALNHIVRPNMKDEEIRDSIIQVALELTSDMEPRWQNAAARLYVFKLYDKIRKNR 83 Query: 237 YKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYL 296 + + ++ + E+G+ + + E+ +++ L N++K ERDF F Y Sbjct: 84 EINNDENIYGDLYGF----INKLTEKGLYGKYILENYTREEILELENEIKPERDFLFTYS 139 Query: 297 GLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMC 353 G+ +L RY + + S +E+PQ FM +AM LA+ E + + A FY++LSS Sbjct: 140 GINLLAKRYLIQDFDRSILELPQQMFMGIAMHLAIPEKKEVRVLWAKRFYDVLSSLKATM 199 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 +TPT+ N+ QLSSCF+ TV D L GI+ +L A ++K+ GG+G VR L + Sbjct: 200 ATPTMSNARKPFYQLSSCFIDTVQDSLKGIYKSLDNFAEVSKFGGGMGIYIGKVRALESP 259 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G G S GVIP++K+ NDTA+AV+Q G R G+V +L+ WH D+ EFL L+ N GDDR Sbjct: 260 IRGFKGASGGVIPWVKLFNDTAIAVDQLGVRNGSVAIWLDAWHKDLPEFLQLKTNNGDDR 319 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-----SDLHDLYGKEFEIAYENYE 526 ++ HD+ PDLF K + W + P E+ L D YG+E+E Y Sbjct: 320 KKAHDVFPGLCYPDLFWKLAETDIDANWYMMCPHEIRLAKGYSLEDFYGEEWEKKYYECV 379 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + R +S + R ++ ETG P+ ++D N +P +H G+++SSNLCT Sbjct: 380 EDDSISK----RVMSVKEIVRLIIKSAAETGTPFAFYRDTVNKMNPNKHKGMIYSSNLCT 435 Query: 587 EITLNSSSE-----------------------ETAVCNLGSINLLAHFANNQFDYDKLAS 623 EI N SS + VCNL S+ L + ++L Sbjct: 436 EIMQNMSSMDIQQSEVKDENGDTIIIEKTKSGDFVVCNLSSVVLGNIDVK---NDEELGY 492 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + T +R +DNVID+N +++ A+ +N +RAIGLG G+ L I + E A Sbjct: 493 VVETQIRAMDNVIDLNYYSVPFAEVTNKKYRAIGLGTSGYHHMLANNLIHWTEDSHKEFA 552 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 D+ E I++HAI AS+ +++E+G YS F+GS W G + + Sbjct: 553 DDVYERINYHAIKASMNISKEKGRYSCFEGSDWHNG--------------NYFELRGYKS 598 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W++L++ V T GMRN MA+AP + A I G S+ IDP Sbjct: 599 EKWNQLREEVNTHGMRNGYLMAVAPNGSTATIAGTSEGIDPVMAR--------------- 643 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 W E + + ++ + +A+ ID W ++ R Sbjct: 644 -----------FWLEEKKGSIIP-----KTAPNLSEENYWYYNSAYNIDQKWCVQINGIR 687 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 Q+ IDQ QS NLY+ + +++ +Y +A G+K+ YY+RS+S T Sbjct: 688 QRHIDQGQSFNLYITTNYTMRQIMNLYIEACKAGVKSIYYVRSKSLT 734 >gi|218961217|ref|YP_001740992.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) [Candidatus Cloacamonas acidaminovorans] gi|167729874|emb|CAO80786.1| putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) [Candidatus Cloacamonas acidaminovorans] Length = 753 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 198/649 (30%), Positives = 304/649 (46%), Gaps = 58/649 (8%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 L++L RYF NG IE RVA +A + EK FY L+ + Sbjct: 3 MELTENALKVLEKRYFRKDENGVLIEDWDKMLTRVASNIASGDEEKT---RRFYQLMDAG 59 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 +F+ ++PTL N+G QLS+CF+ + D + IF ++ A++ K GG G ++ +R Sbjct: 60 YFLPNSPTLMNAGGDLQQLSACFVLPIEDSMESIFETVKNAALIHKSGGGTGFSFSHLRE 119 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 A + TNG S G + FLKV N AV QGG R+GA A L H + +F+ ++N Sbjct: 120 ANARVRSTNGVSSGPLSFLKVFNAATDAVKQGGTRRGANMAILNVDHPQILDFITCKENP 179 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 + + N + I + FM+ VT + + L SP Sbjct: 180 AE----LTNFNISVGITEDFMQAVTNDDEYNLISPHT----------------------- 212 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 +++K+ A ++ ++ M + G P I F D N +P +G + S+N C E Sbjct: 213 ----GAIYKKLKARDVFALIVKMAHKNGEPGIVFLDRLNNANPTPTLGKIESTNPCGEQP 268 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L CNLGSINL + D+DKL +R ++ LD VID++ + + + Sbjct: 269 LLPY----EACNLGSINLALLIKDGDVDWDKLKEVVRESIDFLDAVIDVSKFPLHQIETI 324 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 + +R IGLG+MG+ L L IPYAS EAV +A + MEFI F+A S ELAQE+GA+ Sbjct: 325 SQANRKIGLGVMGWADLLFQLKIPYASEEAVALAAKLMEFIDFYAKERSSELAQEKGAFP 384 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F+ S++ G PWD LK+++K G+RN+ IAPT Sbjct: 385 NFQESIYATG----------------CLKREKINQPWDSLKEKIKKEGIRNATLTTIAPT 428 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 TI+ I S I+P + YVK+ M G+ VN +L L+++ +++ ++ ++ Sbjct: 429 GTISMIADTSSGIEPQFSLAYVKNVMDGEKLIYVNKYLQKALEEKGIYNNKLLDEILTR- 487 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 GS+ IE IPDDLKK+ TA +I P W I + QK+ D A S + + + + Sbjct: 488 GSLAGIEGIPDDLKKVFQTAHDISPEWHIRMQAAFQKYTDNAVSKTINFPNSATVEDIQS 547 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 Y A+ +G K R S S P + Sbjct: 548 AYELAYHLGCKGVTVYRDGSRESQVLYLGTQTTSPEKTDKKVAPRTRPE 596 >gi|269469190|gb|EEZ80729.1| ribonucleotide reductase, alpha subunit [uncultured SUP05 cluster bacterium] Length = 758 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 186/791 (23%), Positives = 323/791 (40%), Gaps = 81/791 (10%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 +++ +G + +++ +V A L+ VS V +DG+ ++ + Sbjct: 3 ENIQVTKRNGKKEPVDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEEIHETI 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI E P+Y ++AR + LR++ + P E+ ++ + Sbjct: 63 IKSAADLISTETPDYQYLSARLAIFHLRKKAFKSFTPPPL-----------FEHIKKFTD 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G+ + + + ++ L + + RD F Y ++ L +Y + G E PQ Sbjct: 112 LGIYDKDILDKYSKKEIKELDKYIDHWRDMKFSYAAVKQLEGKYLVQNRVTGEIYESPQL 171 Query: 320 FFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ V M L + + FY+ +S F TP + T Q SSC L Sbjct: 172 LYVLVGMCLFQEYEAKARMDIVKRFYDAVSLFKISLPTPIMAGVRTPTRQFSSCVLIEAD 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 DDL I A G+G + +R +G+ I G G IPF K + + Sbjct: 232 DDLDSISAAAGAIVKYVSQRAGIGINGGRIRAIGSPIRGGEATHTGCIPFYKHFHTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++V+E L L+ NTG D R ++ L +R ++ Sbjct: 292 CSQGGVRGGAATLFYPFWHLEVKELLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLEDG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 TLFSP +VS L+D + KEF+ YE YE+ + I A L+ K + Sbjct: 352 DITLFSPHDVSGLYDSFFEDQKEFKRLYEQYEQDDSIRK----ETIKARELFAKFMQERA 407 Query: 555 ETGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS--------EETAVCNLGSI 605 TG ++ D CN V SNLC EITL + E A+C L ++ Sbjct: 408 NTGRIYLQNVDHCNTHGAFDAKQAPVRQSNLCMEITLPTKPLYSVQDENGEVALCTLSAV 467 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL A + D+L VR LD+++D + I+ A+ ++ R +G+G+ Sbjct: 468 NLGALDS-----LDELEDITEIIVRALDSLLDYQDYPIKAAELASMNRRTLGIGVTNLAY 522 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + Y+ + ++ E + ++A+ AS +LA E G+ F + + +G+ P+DS Sbjct: 523 YLAKNNAKYSDGSGNPLIHKTFEALQYYALKASNKLANELGSCPLFNETQYSKGIMPVDS 582 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + L WD L+K + G+RNS A+ P + + I + I+P Sbjct: 583 YKKDVDDFCNCDLE----LDWDALRKNIVATGLRNSTLTALMPCESSSQISNSTNGIEPP 638 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + +K + G + + ++ D+K +DG + Sbjct: 639 RGFVSIKQSKDGILKQIVPEYEALKNKY-----ELLWDIKNNDGYLQ------------- 680 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLK 898 + QK++DQ+ S N + ++ K +A+ G+K Sbjct: 681 -------------LCAIMQKFVDQSISTNTHYDPSQFEGNKVPMKLFLMDLLKAYKYGIK 727 Query: 899 TTYY--LRSRS 907 T YY R Sbjct: 728 TLYYHTTRDGG 738 >gi|332141552|ref|YP_004427290.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] gi|327551574|gb|AEA98292.1| ribonucleotide-diphosphate reductase subunit alpha [Alteromonas macleodii str. 'Deep ecotype'] Length = 773 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 189/802 (23%), Positives = 314/802 (39%), Gaps = 72/802 (8%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 L + +G S + +++ +V A GL +VS V + YDG++ S++ L Sbjct: 3 NNLFVTKRNGEKESIDLEKIHKVVTWAAKGLNNVSVSQVEIKAQIQFYDGINTSEIHETL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ LI + P+Y + AR + LR++ E+ + ++ Sbjct: 63 IKSAADLISTDAPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------FEHVGKMVD 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + L E + + + + RD F Y ++ L +Y + G E Q Sbjct: 112 MGKYDKHLLEDYTPEEFAEMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQF 171 Query: 320 FFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 ++ VA L + + FY+ S+F TP + T Q SSC L Sbjct: 172 LYILVAACLFANYDKATRMDYIRRFYDAASTFKLSLPTPIMAGVRTPTRQFSSCVLIETG 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R LG+ I G G IPF K + Sbjct: 232 DSLDSINATASAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKYFQTAVKS 291 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA + WH++VE L L+ N G + R ++ L +R+ ++ Sbjct: 292 CSQGGVRGGAATLFYPIWHMEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRMMKDG 351 Query: 498 GWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 +LFSP +V L+D + ++FE Y YE + ++I A+ L+ + Sbjct: 352 YISLFSPSDVPGLYDAFFADQEKFEELYVKYE----NDDSIRKKQIKAMELFSLFMQERA 407 Query: 555 ETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 TG ++ D CN V V SNLC EI L + + G I L Sbjct: 408 STGRIYLQNVDHCNTHSPFNPEVAPVRQSNLCLEIALPTKPLQHVNDENGEIALCTLSAF 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D+ AVR LDN++D + + A + R +G+G++ F L Sbjct: 468 NLGAIKSVDEFEELADLAVRALDNLLDYQDYPVPAAYNATMGRRTLGVGVINFAYYLAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A + + E + ++ + AS LA+E+GA F + + QG+ PIDS Sbjct: 528 GVKYSDHSANGLVHRTFEAMQYYLLKASNNLAKEKGACPKFNETTYSQGIMPIDSYKKDL 587 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + N WD L++ +K G+RNS A+ P+ T + I + I+P + Sbjct: 588 DSV----CNEPLHYDWDALREEIKAHGLRNSTLSALMPSETSSQISNATNGIEPPRGFIS 643 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +KS+ G V L+ + ++ D+ +DG + Sbjct: 644 IKSSKDGVLKQVVPEY-ETLRDQ----YELLWDIPSNDGYLQ------------------ 680 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYL 903 QK+IDQ S N ++ K L + +G+KT YY Sbjct: 681 --------LVGIMQKFIDQTISANTNYDPSRYEGNKVPMKLLLKDLLTTYKLGVKTLYYH 732 Query: 904 RSR---SATSVEKSTLKGVDGK 922 +R S TS + + Sbjct: 733 NTRDGASDTSALDAKANEPMPR 754 >gi|170077964|ref|YP_001734602.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002] gi|169885633|gb|ACA99346.1| ribonucleotide reductase subunit alpha [Synechococcus sp. PCC 7002] Length = 780 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 226/798 (28%), Positives = 359/798 (44%), Gaps = 86/798 (10%) Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189 A S S++ P P+ ++ G + R+ +V+ AC L+ ++ + + + Sbjct: 29 ATYSASRAVTPTKPQTYVIKRSGKRAPLDVTRIRNVVQWACQDLEA-NTIELEAGLKTRL 87 Query: 190 YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 DG++ +++ LI + + +EP++ V R + L ++ L Sbjct: 88 KDGVTTREIQENLIQCALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VARGYQ 138 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 YP+ + L +L + + D ++Y G +L RY L Sbjct: 139 YGQYPQLVADKVAAKAYDERLL-QYSAAELEIANGWINPDWDMDYDYAGAVLLTKRYLLD 197 Query: 309 INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 E+PQ F+ A+ LAL E + K A +FY ++ +TP L N + Sbjct: 198 D-----ELPQEAFLTCALLLALPEKPENRLKWAKKFYEAIAQRQISLATPILANLRIPNG 252 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 LSSCF+ + D+L IF + A ++K GG+G + + +R G+ + G S GVIP Sbjct: 253 SLSSCFIIGMEDNLESIFREITNAARISKNGGGVGCNVSRIRATGSRVMGKANASGGVIP 312 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++K+ NDTA+AVNQGG+R GA+ L+ WH+DV EFL+++ GD RR+ +D+ + Sbjct: 313 WIKLLNDTAIAVNQGGRRAGAITVSLDVWHLDVPEFLEMQTENGDQRRKAYDVFPQLVVT 372 Query: 487 DLFMKRVTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 D FM+RV WTL P EV DL L+G++F+ AY E D+ +IK+++K+ Sbjct: 373 DEFMRRVQHKEAWTLVDPYEVKENLGIDLAALWGEKFDAAYRQIEASLDQ-DIKLYKKVD 431 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-TAVC 600 A L+++++ ETG P+I FKD N +P QH G + NLC E N + C Sbjct: 432 ARHLFKEIMRSQIETGMPYIAFKDTINRANPNQHEGYIPGVNLCVESFSNVVPGQLAHTC 491 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL S+NL + D+LA AVR+LDN I+I E + N +R IG+G Sbjct: 492 NLDSLNLANI------EADELADACEVAVRILDNTIEITNTPFEDSSIHNQRYRTIGVGA 545 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG L + Y + EA++ E I ++ SV LAQERGAY F GS W +G Sbjct: 546 MGLADWLAKNKLSYKNIEAID---RLFEDIGYYCTRTSVNLAQERGAYPGFPGSEWSKGH 602 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + A+ N + W+ L + V+ G+RNS+ AIAP + + + G S Sbjct: 603 L------IGAKPITWYRENAHAVDRWERLSEDVRKYGIRNSHITAIAPNTSSSLVQGCSA 656 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI P+Y + G + F+ Sbjct: 657 SILPTYSKFFYDKWAKGTVPIAPPFIGKSF------------------------------ 686 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDF 887 + +D ++++ + QKWID S+ NL K + Sbjct: 687 --WFYQENKSMDQRLVVKAVATMQKWIDTGISMELIFNLNQGIYFPNEPERALKAKDIFE 744 Query: 888 IYRQAWLMGLKTTYYLRS 905 I AW G K YY+R+ Sbjct: 745 ILMLAWAEGCKAIYYIRT 762 >gi|225568011|ref|ZP_03777036.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM 15053] gi|225163185|gb|EEG75804.1| hypothetical protein CLOHYLEM_04084 [Clostridium hylemonae DSM 15053] Length = 741 Score = 435 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 235/789 (29%), Positives = 368/789 (46%), Gaps = 96/789 (12%) Query: 155 ISFNSKRLEMIVEEACSGLQDV--SSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEK 212 K L ++ ++ + + GL++ + + L ++ L + Sbjct: 2 EDIKIKGLNQVLAHIQGDFKEPEYDLAQLYQKYASLQKPGLTDKEQLSLLTKAAVELTTQ 61 Query: 213 E-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHE 271 E P + + AR L R + + + ++ + ++ L +E + + E Sbjct: 62 EAPGWEMIAARLLYAGFRDSLEDAMKSRGIRSFYEKIVYL--------TKENLYGSYILE 113 Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLAL 330 ++ A ++ +R F Y GL +L +RY + G +E PQ FM ++M LA+ Sbjct: 114 HYSRQEIEAFAKLIEEDRSRLFTYSGLDLLLNRYVIRTRKGVILETPQEMFMGISMHLAM 173 Query: 331 KET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 KE + + FY +LS +TPTL N+ + QLSSCF+ TVPD L GI+ ++ Sbjct: 174 KEKENRSEWVKRFYGMLSLLKVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGIYRSIDS 233 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A ++KY GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q G R+GAV Sbjct: 234 FAKVSKYGGGMGMYFGKVRAGGSAIRGFEGAAGGVIRWIKLANDTAVAVDQLGVRQGAVA 293 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEV 507 YL+ WH D+ EFL LR N GDDR + HD+ A PD F K + W L P EV Sbjct: 294 VYLDVWHRDLPEFLKLRTNNGDDRMKAHDVFPAVCYPDYFWKMARDHIEGDWYLMCPHEV 353 Query: 508 -----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 L D YGKE+E Y + E R + + R ++ ETG P++ Sbjct: 354 LTVKGYALEDCYGKEWEEKYLDCVAD----ERISKRVLPIKEIIRLIIRSAVETGTPFVF 409 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-----------------------SEETAV 599 +D N +P H G+++ SNLCTEI N E V Sbjct: 410 NRDEVNRMNPNGHKGIIYCSNLCTEIAQNMGAVEEVRQSIETVDGETVVVTVTKPGEFVV 469 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNL S++L + D ++ T+ +A+R LDNVID+N + AK +N +R +GLG Sbjct: 470 CNLASVSLGHIDVS---DEKEIYRTVSSAMRALDNVIDLNFFPVPYAKLNNEKYRPVGLG 526 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + G+ L I + S E + AD+ + + AI+AS ++A+E+G Y+ F+GS W G Sbjct: 527 VSGYHHMLAKHGIQWESEEHLAFADKVFDTLHRAAIAASCDIAEEKGVYACFEGSDWQTG 586 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + W++L+ R + G+RN +A APT++ + I G + Sbjct: 587 --------------AYFDKRKLTGAAWEQLRARAASCGVRNGYMLAAAPTSSTSIIAGTT 632 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 +DP Y++ +G V EL W Sbjct: 633 AGLDPVMHRFYLEEKKNGLVPRVAP----ELSMDTFW----------------------- 665 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLK 898 + A ID W + + RQ+ IDQAQS+NLY+ +E + + + +Y AW G+K Sbjct: 666 ----YYKNAHLIDQTWSVRACGVRQRHIDQAQSMNLYITNEYTFRNVLDLYLLAWECGVK 721 Query: 899 TTYYLRSRS 907 T YY+RSRS Sbjct: 722 TVYYIRSRS 730 >gi|94499219|ref|ZP_01305757.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter sp. RED65] gi|94428851|gb|EAT13823.1| ribonucleotide-diphosphate reductase alpha subunit [Oceanobacter sp. RED65] Length = 756 Score = 435 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 189/789 (23%), Positives = 316/789 (40%), Gaps = 70/789 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ ++ A GL++VS V DG+S SD+ LI Sbjct: 4 TLHVTKRDGNRAPLDLDKIHKVLTWAAEGLENVSVSEVELRAQIQFSDGISTSDIHETLI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI + P+Y + AR + LR++ E+ + ++ Sbjct: 64 KSAADLISENTPDYQYMAARLNIFHLRKKAYGQFEPPAL-----------YEHVAKLVDM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 R L E + + +++ RD F Y ++ L +Y + G E PQ Sbjct: 113 DRYDRHLLEDYTKEEFDEMEGFIEHGRDLNFAYAAVKQLEGKYLAQNRVTGEVFESPQFL 172 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ + L + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YVLIGACLFANYEKSNRMDYVRRFYDAVSTFKLSLPTPIMAGVRTPTRQFSSCVLIETDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I A G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINAAAGSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R ++ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHLDYGVQINKLMYERLIKGGN 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +FE Y YE+ + + I A+ L+ +L Sbjct: 353 ITLFSPSDVPGLYDAFFEDQAKFEELYVKYEQDDSIRK----QTIKAMELFSILLQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP + SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFNPEHAPIRQSNLCLEIALPTKPLKDINDKDGEIALCTLAAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L VR LDN++ + + A+ ++ + R +G+G++ + L Sbjct: 469 LGALENLDELEELSDIIVRALDNLLSYQDYPMAAAEIASESRRTLGVGVINYAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS +LA+E GA + F + + QG+ PID+ + Sbjct: 529 VKYSDGSANGLTHQTFEAIQYYLLKASNQLAKEVGACAKFNETTYSQGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 E + R W+ L+ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 KVCEEEL----RYDWEALRGEIKTHGLRNSTLTALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ + +DG + Sbjct: 645 KASKDGILKQVVPEYQKL-----KNNYELLWNWPSNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQA S N D + K L + +GLKT YY Sbjct: 681 -------LVGIMQKFVDQAISANTNYDPSRFEGGKVPMKLLMKDLLTTYKLGLKTLYYHN 733 Query: 905 SR-SATSVE 912 +R A+ + Sbjct: 734 TRDGASDAQ 742 >gi|225164891|ref|ZP_03727110.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800505|gb|EEG18882.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 608 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 246/572 (43%), Positives = 338/572 (59%), Gaps = 42/572 (7%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +VI+RN V F P KI A+ KAF++++ + +T+ R+ H Sbjct: 51 RVIRRNHQVVPFLPQKIEVAVRKAFLSLDRDSTPA--------EAVTQAVSERI--HASR 100 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA---------- 139 H+E+IQD V+ LM++GH+K+ Y++YR R + RA + + Sbjct: 101 QAFAHVEEIQDIVQEELMKAGHYKVAEAYIIYRALRHNGRATSIQPDAASAGSEIPDLKP 160 Query: 140 -----PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGL 193 + + DGT + ++ L + +E A GL ++ + + +++YD + Sbjct: 161 QIRSGDADTMIVVTQPDGTTLLWDRTDLRLRIEFARIGLDLCLTPAEIETALTRSLYDQI 220 Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 + DL+ +I +S+TLIE++ ++AK R L + EVL + +++ + Sbjct: 221 TRRDLDQTIILNSKTLIERDADFAKFAGRIQLTYIYEEVLHWDIVRDG---IGKLKTAHQ 277 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311 F +++ G L+ ++D+DL LA L D ++LG+Q LYDRY + Sbjct: 278 AAFKKHLAHGAAIHRLNPRLLDYDLDKLAAALDPSADLELDFLGIQTLYDRYLVTDKTTN 337 Query: 312 ----SRIEMPQAFFMRVAMGLALKET-----EKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 R+E PQ F+MRVAMGL L + ++E+R Y L S F STPTLFNSG Sbjct: 338 PAAPRRLETPQLFWMRVAMGLFLDDGDPATGQREQRITALYELYKSRRFCSSTPTLFNSG 397 Query: 363 TRHPQLSSCFLTTVPDDLYGIF-GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 T H QLSSC+L T+ D L I + ENA L+K++GGLG WT VRG GAHI GTNG+S Sbjct: 398 TLHSQLSSCYLYTIDDSLESIMTRGIAENAQLSKWAGGLGGSWTAVRGTGAHIAGTNGES 457 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 QGVIPFLK+ ND AVNQGGKRKG+ CAYLETWH D+ EFL+LRKNTGDDRRRTHDMNT Sbjct: 458 QGVIPFLKLHNDQLNAVNQGGKRKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNT 517 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 ANWIPDLFMKR+ WTLF +V DLH+LYG++FE AY YE A G+I R I+ Sbjct: 518 ANWIPDLFMKRMEAREHWTLFHSSDVPDLHELYGRKFEDAYLRYETLAAEGKIHGHR-IA 576 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 A+ LW+KML+MLFETGH W+TFKD CNIRSPQ Sbjct: 577 ALDLWKKMLSMLFETGHTWLTFKDACNIRSPQ 608 >gi|285016982|ref|YP_003374693.1| ribonucleoside-diphosphate reductase alpha subunit protein [Xanthomonas albilineans GPE PC73] gi|283472200|emb|CBA14707.1| probable ribonucleoside-diphosphate reductase alpha subunit protein [Xanthomonas albilineans] Length = 803 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 240/797 (30%), Positives = 371/797 (46%), Gaps = 87/797 (10%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETALI 203 I+ D G ++F+ RL+ ++ + + + + + + LS ++ LI Sbjct: 45 IVKDGGNRRMAFDRSRLQRTLDRIHAEFPQLDVSDYERKAFAFIEKKESLSADEMVDYLI 104 Query: 204 FSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + ++ P + AR L++L + + E Y + Sbjct: 105 REAESRVDIATPEWEYFAARLYLDRLYKRASKNRFYDAG-----EKYGSYVGLQESLADR 159 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321 GV + + ++ +L + ERD F Y GL +L RY N E+PQ + Sbjct: 160 GVYSINILKNYSKEELAEAGRMIDPERDKLFAYNGLYLLATRYLATDNSRKVYELPQERW 219 Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 + +A+ L E +E+R E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 220 LTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATPTLSNAGKIGGQLSSCFIDTVDD 279 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR G+ I G S GV+P++K N+TAV+V Sbjct: 280 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVKNSSGGVVPWIKQLNNTAVSV 339 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ WH D+E FLDLR N GD R R HD+ TA +PD+FM+ V + Sbjct: 340 DQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTAVCVPDIFMEAVERRGE 399 Query: 499 WTLFSPDEVSDLHDLYGKEF--EIAYE----NYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV ++ Y ++F E E + E + + A+ ++++++ Sbjct: 400 WYLFDPYEVKEVKGWYLQDFFDEKRGEGSFRAKYEEVVADERIGRKVVKAIDMFKRIMVS 459 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 460 QLETGNPFMFYRDEVNRMNPNKHQGMVYSSNLCTEILQNMSPTRVIQEMISGDQIVTTKQ 519 Query: 596 --ETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 + VCNL S+NL D L IR VR+LDNVID+N + +A +N Sbjct: 520 AGDFVVCNLSSVNLGRAVTAQPDLLSPDILERLIRVQVRMLDNVIDLNDLPVPQATITNQ 579 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +RAIGLG G+ L I + S +A + +D E I++ I AS+ LAQE+GAY F Sbjct: 580 KYRAIGLGTFGWHHLLAQKGIEWNSRQAEDYSDTLYERINYLTIQASLALAQEKGAYKVF 639 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 KGS W G + + W EL +V G+RN+ +A+AP + Sbjct: 640 KGSDWQNG--------------EYFSKRGYDSAQWQELAAQVSVHGVRNAWMVAVAPNMS 685 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 A I G + SIDP Y Y + VV Sbjct: 686 TAQIAGSTASIDPIYSAFYYEEKKDFRRPVVAP--------------------------- 718 Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + D + A+++D + +RRQ+ +DQ+ S N Y+ L ++ Sbjct: 719 ----GLTVDTYPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSGIRAGTLLDLH 774 Query: 890 RQAWLMGLKTTYYLRSR 906 AW GLKTTYY+RS Sbjct: 775 MTAWKEGLKTTYYVRSN 791 >gi|218249009|ref|YP_002374380.1| ribonucleoside-diphosphate reductase subunit alpha [Cyanothece sp. PCC 8801] gi|218169487|gb|ACK68224.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp. PCC 8801] Length = 769 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 219/787 (27%), Positives = 363/787 (46%), Gaps = 86/787 (10%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 PK++++ D + N ++ +V AC G +V+ + + + G++ +++ Sbjct: 29 ATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLTTRLRHGITTREIQD 87 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI + + EPN+ V R + L ++ L + Y + Sbjct: 88 NLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTL---------VSRGYQYGNYEKTVHTK 138 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 +E L +L + + + D ++Y G +L RY L E+PQ Sbjct: 139 VEAQEYDSRLLT-YSSEELREAGSWINPDWDTDYDYAGAVLLTSRYLL-----PNELPQE 192 Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 + ++ LA E + A +FY +++ +TP L N L+SCF+ ++ Sbjct: 193 ALLSCSLLLATVESPENRLLWARQFYEAIATRKISLATPILANLRVPGGSLTSCFIVSID 252 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L IF + A ++K GG+G + + +R G+ + S G+IP++K+ NDTA+A Sbjct: 253 DSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANASGGIIPWIKLLNDTAIA 312 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ +PD FM+RV + Sbjct: 313 VNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQVILPDEFMRRVINKS 372 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P EV +L +L+G++FE AY ER+ + +I ++++I A L++ ++ Sbjct: 373 EWTLVDPYEVRTKLGIELAELWGEKFEEAYGLIERELGQ-KITLYKRIQARDLFKTIMRS 431 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHF 611 ETG P++ FKD N +P +H G + NLCTE N S +E CNL S+NL Sbjct: 432 QVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPGKEAHSCNLVSLNLANL- 490 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +L S R AVR+LDN IDI + E AK N+ +R IG+G MG L Sbjct: 491 -----EASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYRTIGIGCMGLADWLAKNR 545 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y S + ++ E + AS+ELA+ER Y +F+GS W QG + A+ Sbjct: 546 LSYDS---LGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGSEWSQGKL------IGAK 596 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D N T + W +L + +K G+RNS+ AIAP + + + G + SI P Y + Sbjct: 597 SVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFY 656 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G + F W P++ T + Sbjct: 657 DKWAKGTVPIAPPF-----IDESFW-------------------FYPEN-----KT---L 684 Query: 852 DPMWLIESASRRQKWIDQAQSL----NLY----LDE-----PSGKKLDFIYRQAWLMGLK 898 D ++++ + Q+W+D S+ NL + + K + AW G K Sbjct: 685 DQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSITAKDIFDTLVLAWQSGCK 744 Query: 899 TTYYLRS 905 YY+R+ Sbjct: 745 AVYYVRT 751 >gi|118602533|ref|YP_903748.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567472|gb|ABL02277.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 757 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 184/794 (23%), Positives = 322/794 (40%), Gaps = 75/794 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K++ +G S + +++ +V A L+ VS V +DG+ D+ +I Sbjct: 4 DIKVIKRNGQQESIDMEKIHRVVHWASQDLKGVSVSQVEINAQLAFFDGIKTEDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E P+Y + AR + LR++ + P E+ ++ + Sbjct: 64 KSAADLISIEVPDYQYLAARLTIFHLRKKAFKSFTPTPL-----------FEHIKKFTDL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + + + ++ L + + RD F Y ++ L +Y + G E PQ Sbjct: 113 SIYDKEILNKYSKEEIETLGAYIDHWRDMNFSYAAVKQLEGKYLVQNRVTGEIYESPQLL 172 Query: 321 FMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ + M L + + FY+ +S F TP + T Q SSC L V D Sbjct: 173 YVLIGMYLFQEYEASIRMDIVKRFYDAVSLFKISLPTPIMAGVRTPIRQFSSCVLIEVDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL I G+G + +R +G+ I G G IPF K + + Sbjct: 233 DLDSISAGAGAIVKYVSQRAGIGINGGKIRAIGSPIRGGEAIHTGCIPFYKHFHTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ NTG D R ++ L +R ++ Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNTGTDENRIRHLDYGVQFNGLMYQRFLKDDD 352 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 TLFSP +V L+D + E YE+ I+ + I A L+ K + TG Sbjct: 353 ITLFSPHDVPGLYDAFFANQEEFKRLYEQYEQNDSIRK-QAIKARELFAKFMQERANTGR 411 Query: 559 PWITFKDPCNIRSPQQHVG-VVHSSNLCTEITLNSSS--------EETAVCNLGSINLLA 609 ++ D CN S + SNLC EITL + E A+C L ++NL A Sbjct: 412 IYLQNVDHCNTHSAFDAKQAPIKQSNLCMEITLPTKPLYSVQDEQGEVALCTLSAVNLGA 471 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + +++ + VR LD ++D + I+ A+ S+ + R +G+G+ L Sbjct: 472 LDS-----LNEMEALTDIIVRSLDCLLDYQDYPIKAAELSSKSRRTLGIGVTNLAYYLAK 526 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y+ ++ ++ E + ++++ AS LA+E G F + + QG+ PIDS Sbjct: 527 NGVKYSDGSGNQLIHKTFEALQYYSLKASNTLAKELGVCPLFSQTQYSQGIMPIDSYKKD 586 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + + + L WD L++ +K+ G+RNS A+ P + + I + I+P + Sbjct: 587 IDAFCDCKLE----LDWDTLRQNIKSTGLRNSTLTALMPCESSSQISNSTNGIEPPRGFV 642 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +K + G + ++ D+K ++G + Sbjct: 643 SIKQSKDGILKQIVPEYERL-----KNQYELLWDIKDNEGYLQ----------------- 680 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY 902 QK++DQ+ S N++ + K +A+ G+KT YY Sbjct: 681 ---------LCGIMQKFVDQSISTNMHYDPSQFEGNRVPMKLFLMDLFRAYKYGIKTLYY 731 Query: 903 --LRSRSATSVEKS 914 R EK Sbjct: 732 HTTRDGGDDWQEKE 745 >gi|319655056|ref|ZP_08009125.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2] gi|317393251|gb|EFV74020.1| ribonucleoside-diphosphate reductase [Bacillus sp. 2_A_57_CT2] Length = 740 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 240/751 (31%), Positives = 361/751 (48%), Gaps = 84/751 (11%) Query: 190 YDGLS---ESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATH 245 Y+ +S + I + I EP++ +R LL+KL E K ++ Sbjct: 30 YEEMSQLGAEAMYDQFILDCLSFISIDEPDWTFAASRLLLKKLYTE-----SGKNRECQP 84 Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + R G+ + L + ++ LA +K E D F YLGL++L DRY Sbjct: 85 DDCYKHFYTLIERLTALGIYDQDLLDVYSKDEINELAQFIKKENDRLFTYLGLKMLADRY 144 Query: 306 FLHIN-GSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 + E+PQ FM ++M L +E + + + E Y +S + +TPTL N+G Sbjct: 145 LARDKQKNLYELPQERFMIISMVLMKREPKGKRLELIKEAYWAMSGLYMTVATPTLANAG 204 Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 QLSSCF+ TV D L I+ + + A L+K GG+G +R G+ I G G S Sbjct: 205 KNWGQLSSCFIETVDDSLDSIYDSNTDIASLSKNGGGIGVYLGKIRSRGSDIKGFKGASS 264 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GVIP++K N+TAV+V+Q G+R+GA+ YL+ WH D+ FLD + N GD+R+RTHD+ T Sbjct: 265 GVIPWMKQLNNTAVSVDQLGQRQGAISVYLDVWHKDIFSFLDAKLNNGDERQRTHDLFTG 324 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKV 536 IPDLFM++V W LF P EV + ++F E ++ ++ Sbjct: 325 VCIPDLFMEKVESRGYWYLFDPHEVRKVMGFSLEDFYDEGEGEGSFRQKYKECIDNPNLS 384 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--- 593 K+ A+ + + ++ ETG P++ ++D N ++ H G+++ +NLCTEI N S Sbjct: 385 REKVPAIDIMKSIMRSQLETGTPFMFYRDEVNRKNANSHCGMIYCTNLCTEIVQNQSVTK 444 Query: 594 ----------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + VCNL SINL + L + VR+LDNVID Sbjct: 445 RVEEYTRDGRIIIEKHPGDFVVCNLSSINLARAISEGV-----LERLVPIQVRMLDNVID 499 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 IN + + + +N +RAIGLG G+ L L I + S EA + AD E I+F AI + Sbjct: 500 INSIPVPQGQITNQKYRAIGLGTFGWHHLLALKKITWESEEAEKFADILYEQIAFLAIKS 559 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S++LA+E+G+YS+FKGS W+ G + E R L S + W L K V G Sbjct: 560 SMDLAKEKGSYSAFKGSDWETGAYF--------EKRGYLEAE--SDMDWAALSKEVSENG 609 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RN+ +A+AP A+ A I G + SIDP + Y + V D+ Sbjct: 610 VRNAYLLAVAPNASTALIAGSTPSIDPIFNKQYSEEKKDYRIPVTAP---------DINS 660 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E + + +A+ I+ W I + RQK IDQA S N Y+ Sbjct: 661 ETIW----------------------YYKSAYHINQEWSIRQNANRQKHIDQAISFNFYI 698 Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 L ++ AW LKTTYY+RS S Sbjct: 699 PNHIKAIDLLNLHLSAWKKKLKTTYYIRSTS 729 >gi|238897539|ref|YP_002923218.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465296|gb|ACQ67070.1| ribonucleoside diphosphate reductase 1, alpha subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 762 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 182/806 (22%), Positives = 311/806 (38%), Gaps = 69/806 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG S + ++ ++ A GL VS V + YDG+ D+ +I Sbjct: 4 SLLVTKRDGRKESIDLDKIHRVINWAAEGLNHVSVSQVELRSQIQFYDGIKTEDIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI E P+Y + AR + LR++ P E+ + ++ Sbjct: 64 KAAADLISCEAPDYQYLAARLAIFHLRKKAYGRFEPPPL-----------FEHVSKMVKM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + RD F Y ++ L +Y +N E Q Sbjct: 113 GKYDPHLLEDYSEDEFAQMDECIDHWRDMTFSYAAVKQLEGKYLVQNRVNHQIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSRYPASTRLDYIKRFYHAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R G+ I G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGVNAGAIRAQGSPIRSGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATVFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYQRLLKGEE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+ + EF+ Y YE D +KI AV L+ ++ Sbjct: 353 ITLFSPSDVPGLYAAFFSDQSEFQRLYVQYEADPDIR----HKKIKAVELFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG ++ D CN SP V SNLC EI L ++ G I L Sbjct: 409 TGRIYVQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTAPLNNINDEKGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L + R LD ++D + I A++S + R +G+G++ F L Sbjct: 469 LGAINSLDELQELATLSARALDALLDYQHYPIPAAQRSAVSRRTLGIGVINFAYYLARNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS +LA+E+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYYLLRASNDLAREQGACPWFDQTRYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 W L++ + G+R+S ++ P+ T + I + I+P + + Sbjct: 589 DI----HQEPLHYDWASLRQDILKFGLRHSTLSSLMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + + ++ ++ +DG + Sbjct: 645 KASKDGILRQVVPEYESLKEAY-----ELLWNIPDNDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QK++DQ+ S N D + K+L A+ G+KT YY Sbjct: 681 -------LVGLMQKFVDQSISANTNYDPRRFSNGKVPMKQLLTDLLNAYKWGIKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTD 930 +R ++ +K + Sbjct: 734 TRDGADDVQADVKENLSMDDECSSGG 759 >gi|266623613|ref|ZP_06116548.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium hathewayi DSM 13479] gi|288864590|gb|EFC96888.1| ribonucleoside-diphosphate reductase, alpha subunit [Clostridium hathewayi DSM 13479] Length = 640 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 219/678 (32%), Positives = 325/678 (47%), Gaps = 85/678 (12%) Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 + + E ++ L RD F Y GL++L RY + +E PQ F Sbjct: 4 QLYGDYILEHYTKEEIETCEGFLDGTRDQLFTYSGLELLLSRYVIRSRENVPLESPQEMF 63 Query: 322 MRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 + +A+ LA+ E + + FY++LS+ +TPTL N+ + QLSSCF+ TVPD L Sbjct: 64 LGIALHLAMLEKNDRLEWVRRFYDMLSTLKVTMATPTLSNARKPYHQLSSCFIDTVPDSL 123 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI ++K+ANDTAVAV+Q Sbjct: 124 DGIYRSIDSFAKVSKFGGGMGLYFGKVRAAGSAIRGFKGAAGGVIRWIKLANDTAVAVDQ 183 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAG 498 G R+GAV YL+ WH D+ EFL LR N GDDR + HD+ A P+LF K + +A Sbjct: 184 LGVRQGAVAVYLDAWHKDLPEFLALRTNNGDDRMKAHDVFPAVCYPNLFWKLAKEDIDAD 243 Query: 499 WTLFSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 W L P E+ L D YG+E+E Y + R I L R +L Sbjct: 244 WYLMCPHEILTVKGYSLEDSYGREWEERYWECVADHRIHK----RVIPVKELVRLILKSA 299 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE----------------- 596 ETG P+ +D N +P H G+++ SNLCTEI N S E Sbjct: 300 VETGTPFTFNRDLVNEANPNSHKGIIYCSNLCTEIAQNMSPVEQVEQRIETVDGETVVVT 359 Query: 597 ------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 VCNL S++L + +++ + AVR LDNVID+N + A+ +N Sbjct: 360 VTKPGDFVVCNLASLSLGKIDVT---NREEVTRLTQYAVRALDNVIDLNFFPVPYARINN 416 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R IGLG+ G+ L I + S E + D E+I++ AI AS + A+E+G Y Sbjct: 417 MKYRPIGLGVSGYHHMLAKNGISWESEEHLAFTDRVFEWINYAAIEASCDNAREKGCYEL 476 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F+GS W G + W LK++ GMRN +AIAPT+ Sbjct: 477 FEGSDWQTG--------------AYFEKRKYHSEEWLRLKEKTAANGMRNGWLIAIAPTS 522 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 + + + G + +DP Y++ +G V +L W Sbjct: 523 STSMLAGTTAGLDPIMNRYYLEEKKNGLVPRVAP----DLSPETFWQ------------- 565 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 + A ID W + + RQ+ +DQAQS+NLY+ +E + +++ +Y Sbjct: 566 --------------YKNAHYIDQQWSVRAGGIRQRHVDQAQSMNLYITNEYTLRQVLNLY 611 Query: 890 RQAWLMGLKTTYYLRSRS 907 AW G+KT YY+RSRS Sbjct: 612 ILAWECGVKTIYYIRSRS 629 >gi|190574753|ref|YP_001972598.1| ribonucleotide-diphosphate reductase subunit alpha [Stenotrophomonas maltophilia K279a] gi|190012675|emb|CAQ46303.1| putative ribonucleoside-diphosphate reductase 2 alpha chain [Stenotrophomonas maltophilia K279a] Length = 828 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 244/800 (30%), Positives = 371/800 (46%), Gaps = 93/800 (11%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALI 203 I + G + F ++RL+ ++ + + + + +S DL LI Sbjct: 70 ITKEAGNRRLPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLI 129 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259 + + ++ P + + AR L +L + + +++ Y Y Sbjct: 130 REAESRVDLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVGLKYGSYVGLQESL 181 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 + G+ + + +L + ERD F Y GL +L RY E+PQ Sbjct: 182 ADRGIYSNDILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQ 241 Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 ++ +A+ L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 242 ERWLTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 301 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR GA I G S GV+P++K N+TA Sbjct: 302 VDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTA 361 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGAV YL+ WH D+E F+DLR N GD R R HD+ T+ +PDLFM+ V + Sbjct: 362 VSVDQLGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVER 421 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKM 549 A W LF P EV Y ++F E + + E R + A+ L++++ Sbjct: 422 RADWYLFDPHEVKQAKGWYLQDFYDEKRGAGSFRLRYAELVADERISRRTVKAIDLFKRI 481 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------- 595 + ETG+P++ ++D N R+P +H G+++SSNLCTEI N S Sbjct: 482 MLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIVT 541 Query: 596 -----ETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + D L I VR+LDNVID+N + +A Sbjct: 542 TRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATI 601 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG G+ L I + SP+A E+AD E I+F I AS +LA+E+G+Y Sbjct: 602 TNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEELADRLYERINFLTIQASAQLAKEKGSY 661 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F GS W G + D S WD L + V T G+RN +A+AP Sbjct: 662 PMFAGSDWHNGRYFRD--------------RDYSGAAWDSLAREVATHGLRNGWLLAVAP 707 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + A I G + SIDP Y Y + V Sbjct: 708 NMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP------------------------ 743 Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + + A+++D + +RRQ+ +DQ+ S NLY+ L Sbjct: 744 -------GLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLL 796 Query: 887 FIYRQAWLMGLKTTYYLRSR 906 ++ AW GLKTTYY+RS Sbjct: 797 ELHLSAWREGLKTTYYVRSN 816 >gi|319760601|ref|YP_004124539.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039315|gb|ADV33865.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Blochmannia vafer str. BVAF] Length = 763 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 185/782 (23%), Positives = 319/782 (40%), Gaps = 69/782 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N +++ ++ A GL+ +S V ++ Y+G+ SD++ +I Sbjct: 4 TLLVTKRDGHHEPINLEKIHRVINWAAQGLEKISVSQVELRSHIQFYNGIKTSDIQETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI KE P+Y + AR + LR++ LY R ++ Sbjct: 64 KAAADLISKEEPDYQYLAARLSVFHLRKKAYGQFEPP----------KLYDHVL-RLVKI 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLNDYTHNEFEQMDTFIDHWRDMNFSYAAIKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ A L + + +FYN +S+F +TP + T Q SSC L D Sbjct: 173 YILTAACLFAKYPKNTRMDYIKKFYNAISTFKISLATPIMSGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R +G+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVAQRAGIGINAGRIRAIGSPIRNGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH+++E L L+ N G + R ++ I L +R+ Sbjct: 293 SQGGVRGGAATLFYPIWHLEIENLLVLKNNRGVESNRIRHLDYGVQINKLMYQRLITGKH 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V DL++ + F+ Y YE ++K I A+ L+ M+ Sbjct: 353 ITLFSPADVPDLYESFFSDQNLFDYLYHKYENDHKIRQLK----IKAIELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN + + SNLC EITL + G I L Sbjct: 409 TGRIYIQHTDHCNTHSPFNSALAPIRQSNLCLEITLPTKPLNNINDTNGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N + D L+ VR LD ++D + + A+ S R++G+G++ + L Sbjct: 469 LGNLNNLDDLSELSTLIVRALDALLDYQSYPVLAAQYSAKNRRSLGIGVINYAYYLAKHG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I ++ + AS LA+E+GA + F + + QG+ PID+ + Sbjct: 529 VRYSDGSANTLTHHTFEAIQYYLLKASNLLAKEKGACAWFDDTSYAQGILPIDTY---KK 585 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D + ++ R W+EL+ ++K G+RNS A+ P+ T + I + I+P + + Sbjct: 586 DLDYI-ISEPLRYNWEELRNQIKQYGLRNSTVSALMPSETSSQISNSTNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V + ++ ++ + G Sbjct: 645 KASKDGILRQVVPNCEKLAS-----NYELLWNIPNNQG---------------------- 677 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 +E QK+IDQ+ S N+ + K+L A+ +G+KT YY Sbjct: 678 ----YLELVGIMQKFIDQSISTNMNYDPSCFPESKVPIKQLLSDLLYAYKLGIKTLYYHN 733 Query: 905 SR 906 +R Sbjct: 734 TR 735 >gi|172058303|ref|YP_001814763.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium sibiricum 255-15] gi|171990824|gb|ACB61746.1| ribonucleoside-diphosphate reductase, alpha subunit [Exiguobacterium sibiricum 255-15] Length = 755 Score = 432 bits (1111), Expect = e-118, Method: Composition-based stats. Identities = 237/783 (30%), Positives = 364/783 (46%), Gaps = 93/783 (11%) Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS--ESDLETALIFSSRTLIE-KEPN 215 + + ++ + + ++ + + + +G + + L + +++ +EPN Sbjct: 17 IEDVYTVIRQITAAYSELDVERYTERAIRAL-EGKTLQADQVYELLTMHALDMLKAEEPN 75 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 + V L +L E + E + E G+ L E+ Sbjct: 76 WTFVATATYLNRLYLEASENRGYAAE-----ERYGSLYHLIEKLTEIGIFTPHLLETYTK 130 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKE-- 332 ++ LA + RD F Y+GL+ L DRY + E+PQ FM +AM L E Sbjct: 131 EEVEELAASIDPSRDHLFTYIGLRTLSDRYLARDHVKKLYELPQERFMIIAMTLMQTEPK 190 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 + + E Y LS+ + +TPTL N+G + QLSSCF+ TV D L GI+ + + A Sbjct: 191 ERRIELVKESYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLRGIYDSNTDVAT 250 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+G +R G+ I G G S GVIP++K N+TAV+V+Q G R+G++ YL Sbjct: 251 LSKGGGGIGVYMGKIRSRGSDIKGFKGVSSGVIPWMKQLNNTAVSVDQLGMRQGSIAVYL 310 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD--- 509 + WH D+ EFLD + N GD+R RTHD+ T +PD FM+ V W LF P E+ Sbjct: 311 DIWHKDILEFLDAKLNNGDERLRTHDLFTGVSLPDHFMRTVEARGDWYLFDPHEIRTVMG 370 Query: 510 -------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 G F Y + K + A+ L ++ + ETG P++ Sbjct: 371 FSLEDSFDETEQGGSFTEKYTACVNEPRLSRTK----VPAIDLVKRYMRSQLETGTPYMF 426 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCNLG 603 F+D N +P +H G+++SSNLC+EI N S + VCNL Sbjct: 427 FRDAVNRANPNKHAGMIYSSNLCSEIMQNMSPTTVTEEYTEDGKIIITKTPGDFVVCNLS 486 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SI L N L I +R+LDNVID+N + +A+ +N +RA+GLG G+ Sbjct: 487 SIALARAVRENV-----LERLIPIQMRMLDNVIDLNTIDVPQAQITNQKYRAVGLGTFGW 541 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L L I + S EAV+ AD E I++ I AS++LA+E+GAY F+GS W G + Sbjct: 542 HHLLALEGIRWESVEAVQYADRLYEKIAYLTIDASMQLAKEKGAYRLFEGSEWQTGEYIA 601 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 L WD L+ + GMRN+ MA+AP ++ A I G + SID Sbjct: 602 RRHYKTTPE-----------LNWDRLQADITAHGMRNAYLMAVAPNSSTAIIAGSTASID 650 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P Y+ +Y + + V + + + Sbjct: 651 PIYKKVYAEEKKNYKIPVT-------------------------------VPDLTPETNW 679 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYY 902 + +AFEID +W I + RQ+ IDQA S NLY+ + K+L ++ +AW +G+KT YY Sbjct: 680 FYKSAFEIDQLWSIRQNASRQRHIDQAISFNLYVKNSVKAKELLEMHMEAWQLGMKTIYY 739 Query: 903 LRS 905 RS Sbjct: 740 TRS 742 >gi|257062092|ref|YP_003139980.1| ribonucleoside-diphosphate reductase, subunit alpha [Cyanothece sp. PCC 8802] gi|256592258|gb|ACV03145.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyanothece sp. PCC 8802] Length = 769 Score = 432 bits (1111), Expect = e-118, Method: Composition-based stats. Identities = 219/787 (27%), Positives = 363/787 (46%), Gaps = 86/787 (10%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLET 200 PK++++ D + N ++ +V AC G +V+ + + + G++ +++ Sbjct: 29 ATPKIQVVRRDNSWTPLNIGKIRAVVHWACEG-HNVNPIALEAGLTTRLRHGITTREIQD 87 Query: 201 ALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 LI + + EPN+ V R + L ++ L + Y + Sbjct: 88 NLINCALEMCSPDEPNWRYVAGRLHIWSLWKDTL---------VSRGYQYGNYEKTVHTK 138 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQA 319 +E L +L + + + D ++Y G +L RY L E+PQ Sbjct: 139 VEAQEYDSRLLT-YSSEELREAGSWINPDWDTDYDYAGAVLLTSRYLL-----PNELPQE 192 Query: 320 FFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 + ++ LA E + A +FY +++ +TP L N L+SCF+ ++ Sbjct: 193 ALLSCSLLLATVESPENRLLWARQFYEAIATRKVSLATPILANLRVPGGSLTSCFIVSID 252 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L IF + A ++K GG+G + + +R G+ + S G+IP++K+ NDTA+A Sbjct: 253 DSLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMKKANASGGIIPWIKLLNDTAIA 312 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 VNQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ +PD FM+RV + Sbjct: 313 VNQGGRRAGAVTVGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLILPDEFMRRVINKS 372 Query: 498 GWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 WTL P EV +L +L+G++FE AY ER+ + +I ++++I A L++ ++ Sbjct: 373 EWTLVDPYEVRTKLGIELAELWGEKFEQAYGLIERELGQ-KITLYKRIQARDLFKTIMRS 431 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS-EETAVCNLGSINLLAHF 611 ETG P++ FKD N +P +H G + NLCTE N S +E CNL S+NL Sbjct: 432 QVETGMPYLAFKDTINQANPNKHEGYIPGVNLCTESFSNVSPGKEAHSCNLVSLNLANL- 490 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +L S R AVR+LDN IDI + E AK N+ +R IG+G MG L Sbjct: 491 -----EASELESVCRIAVRILDNTIDITNNPFEDAKTHNNKYRTIGIGCMGLADWLAKNR 545 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y S + ++ E + AS+ELA+ER Y +F+GS W QG + A+ Sbjct: 546 LSYDS---LGQMNQLFEEFGYWCTHASMELAKERTPYPAFEGSEWSQGKL------IGAK 596 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 D N T + W +L + +K G+RNS+ AIAP + + + G + SI P Y + Sbjct: 597 SVDWFLENATHKERWKQLAEDIKNHGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFY 656 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G + F W P++ T + Sbjct: 657 DKWAKGTVPIAPPF-----IDESFW-------------------FYPEN-----KT---L 684 Query: 852 DPMWLIESASRRQKWIDQAQSL----NLY----LDE-----PSGKKLDFIYRQAWLMGLK 898 D ++++ + Q+W+D S+ NL + + K + AW G K Sbjct: 685 DQQKVVKAVAVMQQWVDTGISMELLFNLNQGIYFPDEPERSITAKDIFDTLVLAWQSGCK 744 Query: 899 TTYYLRS 905 YY+R+ Sbjct: 745 AVYYVRT 751 >gi|194366072|ref|YP_002028682.1| ribonucleotide-diphosphate reductase subunit alpha [Stenotrophomonas maltophilia R551-3] gi|194348876|gb|ACF51999.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas maltophilia R551-3] Length = 787 Score = 432 bits (1111), Expect = e-118, Method: Composition-based stats. Identities = 243/800 (30%), Positives = 372/800 (46%), Gaps = 93/800 (11%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALI 203 I + G + F ++RL+ ++ + + + + +S DL LI Sbjct: 29 ITKEAGNRRLPFEAERLQRSIDAVHAEFPQLDVSDYRRVVQAMVERKPSISADDLVDLLI 88 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259 + + ++ P + + AR L +L + + +++ Y Y Sbjct: 89 REAESRVDLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVGLKYGSYVGLQESL 140 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 + G+ + + +L + ERD F Y GL +L RY E+PQ Sbjct: 141 ADRGIYSNDILRCYSKEELQQAGEMIDPERDRLFAYNGLYLLATRYLASDRSREVYELPQ 200 Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 ++ +A+ L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 201 ERWLTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 260 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR GA I G S GV+P++K N+TA Sbjct: 261 VDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVANSSGGVVPWIKQLNNTA 320 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGAV YL+ WH D+E F+DLR N GD R R HD+ T+ +PDLFM+ V + Sbjct: 321 VSVDQLGQRKGAVAVYLDIWHRDIEAFMDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVER 380 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKM 549 A W LF P EV Y ++F E + + + E R + A+ L++++ Sbjct: 381 RADWYLFDPHEVKQAKGWYLQDFYDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKRI 440 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------- 595 + ETG+P++ ++D N R+P +H G+++SSNLCTEI N S Sbjct: 441 MLSQLETGNPFLFYRDEVNRRNPNKHAGMIYSSNLCTEILQNMSPTRMIQEIVSGDQIVT 500 Query: 596 -----ETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + D L I VR+LDNVID+N + +A Sbjct: 501 TRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATI 560 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +NH +RAIGLG G+ L I + S +A ++AD E I+F I AS +LA+E+G+Y Sbjct: 561 TNHKYRAIGLGTFGWHHLLAQQSIQWESQDAEQLADRLYERINFLTIQASAQLAKEKGSY 620 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F GS W G + D S WD L + V T G+RN +A+AP Sbjct: 621 PMFAGSDWHNGRYFSD--------------RDYSGAAWDSLAREVATHGLRNGWLLAVAP 666 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + A I G + SIDP Y Y + V Sbjct: 667 NMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP------------------------ 702 Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + + A+++D + +RRQ+ +DQ+ S NLY+ L Sbjct: 703 -------GLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLL 755 Query: 887 FIYRQAWLMGLKTTYYLRSR 906 ++ AW GLKTTYY+RS Sbjct: 756 ELHLSAWREGLKTTYYVRSN 775 >gi|332708566|ref|ZP_08428540.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya majuscula 3L] gi|332352663|gb|EGJ32229.1| ribonucleoside-diphosphate reductase, alpha subunit [Lyngbya majuscula 3L] Length = 753 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 214/786 (27%), Positives = 359/786 (45%), Gaps = 86/786 (10%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 ++++ DG+L S + ++ +VE AC+G +DV+ + + + DG++ +++ Sbjct: 14 QGNIQVIKRDGSLTSLDISKIRAVVEWACAG-KDVNPITLEAGLTTRLRDGVTTREIQDN 72 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI + + + P++ V R + L ++ L YP + Sbjct: 73 LINCALEMCSPDQPDWRYVAGRLQIWSLWKDTL---------VNRGYEYGDYPRTVRSKV 123 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 E G + +L + + + D ++Y G +L RY L E+PQ Sbjct: 124 ESGQYDPSILT-YTTEELKEAGSWINRDWDTDYDYAGAVLLTRRYLLGD-----ELPQEA 177 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 F+ A+ L E ++ A FY ++ +TP L N LSSCF+T++ D Sbjct: 178 FLTCALLLGSVEVPEDRLGWARRFYEAIAQRKISLATPILANLRIPQGSLSSCFITSIDD 237 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L IF + + A ++K GG+G + + +R G+ + G S GVIP++K+ NDTA+AV Sbjct: 238 NLESIFEGITDTARISKNGGGVGVNVSRIRSTGSWVMGKANASGGVIPWIKLLNDTAIAV 297 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ IPD FM+RV Sbjct: 298 NQGGRRAGAVTVSVDVWHLDVPEFLEMQAENGDPRRKAYDIFPQLVIPDEFMRRVVNKED 357 Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P EV +L +L+ +EFE AY+ E + +++ ++A L++ ++ Sbjct: 358 WTLIDPYEVRIKLGIELSELWAEEFESAYQTIEAAIGET-LTLYKTVNARELFKTIMRSQ 416 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-TAVCNLGSINLLAHFA 612 ETG P++ FKD N +P QH G + + NLCTE N CNL SINL Sbjct: 417 VETGMPYLAFKDTINRANPNQHQGYIPAVNLCTESFSNVEIGHAAHCCNLDSINLANIEE 476 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 +L + R AVR+LDN ID++ + A N +R IG+G MG L Sbjct: 477 T------ELPNICRLAVRILDNTIDLSTPPFKAAHSHNQKYRTIGVGCMGLADWLAKR-- 528 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 + + ++ E I ++ AS+ELA ERGAY++F GS W +G + A+ Sbjct: 529 -WLTYNNLKEISNLFEDIGYYCTHASMELAIERGAYAAFDGSEWSKGKL------IGAKP 581 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + N W L + ++ G+RNS+ AIAP + + + G + S+ P + + Sbjct: 582 VEWFVENSQHGERWVALSQDIQQFGIRNSHISAIAPNTSSSLVQGCTASVLPVHSKFFYD 641 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G + + + + W + + K D Sbjct: 642 KWAKGTVP-IAPPFIKD----NFW--------------------LYHENKNF-------D 669 Query: 853 PMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLMGLKT 899 ++++ + Q+WID S+ NL + K + AW +G K Sbjct: 670 QKKVVKAIATIQQWIDTGISMELLFNLNQGVYFPDEPERTLKAKDIYETLVMAWELGCKA 729 Query: 900 TYYLRS 905 YY+R+ Sbjct: 730 VYYIRT 735 >gi|148259751|ref|YP_001233878.1| ribonucleotide-diphosphate reductase subunit alpha [Acidiphilium cryptum JF-5] gi|146401432|gb|ABQ29959.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidiphilium cryptum JF-5] Length = 628 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 201/682 (29%), Positives = 301/682 (44%), Gaps = 91/682 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY + E Q F RVA + + A Y+ Sbjct: 26 IDRSRDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYD 76 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W Sbjct: 77 YISKLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYW 136 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + NGK+ GV+PF++V + +A++QG R+G+ YL H +VEEF++ Sbjct: 137 GNLRSIGEKVGQ-NGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIE 195 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 196 IRRPTGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKD----------------- 238 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 R +SA +LW ++LT ETG P+I F D N P+ H V Sbjct: 239 ----------GAHVRSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVK 288 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC EITL + + L + ++ I +R LDNV I Sbjct: 289 TSNLCAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQFIEDVMRFLDNVLQDFI 348 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D ++ +AK + R++GLG+MGF S L L+IP+ S A I A + Sbjct: 349 DNAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRAGADA 408 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ERG Sbjct: 409 ASRKLAEERGPCP------------------------------------------DAAEY 426 Query: 757 GMR--NSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+ S+ MAIAPTA+I+ I G S I+P N++++ +SG F+V N L L + Sbjct: 427 GVMERFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLAAK 486 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 DE S++ GS+ +++ + DD K + TAFE+D W+IE A+ R +I Q+QS+ Sbjct: 487 GRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQSI 546 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 N++L + L I+ QAW G+K+ YY RS S + + K + Sbjct: 547 NVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADTVSEKVQRHEHGDAANRTAP 606 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + + +S T+ EC CQ Sbjct: 607 APAPLVAAAASTTNYEECLACQ 628 >gi|326403281|ref|YP_004283362.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium multivorum AIU301] gi|325050142|dbj|BAJ80480.1| ribonucleoside-diphosphate reductase alpha subunit [Acidiphilium multivorum AIU301] Length = 628 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 201/682 (29%), Positives = 301/682 (44%), Gaps = 91/682 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY + E Q F RVA + + A Y+ Sbjct: 26 IDRSRDSLLTEFGRATLNDRYLM-----PGESYQDLFARVASYYG----DDAEHAQRLYD 76 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W Sbjct: 77 YISKLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVDLWNENVWLASKGGGIGSYW 136 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + NGK+ GV+PF++V + +A++QG R+G+ YL H +VEEF++ Sbjct: 137 GNLRSIGEKVGQ-NGKTSGVVPFIRVMDSLTLAISQGSLRRGSAAVYLPISHPEVEEFIE 195 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 196 IRRPTGGDPNRKALNLHHGILVSDAFMRAVEADEMWALTSPKD----------------- 238 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 R +SA +LW ++LT ETG P+I F D N P+ H V Sbjct: 239 ----------GAHVRSVSARSLWIRILTARIETGEPYIIFADHVNNARPEHHKLAGLEVK 288 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC EITL + + L + ++ I +R LDNV I Sbjct: 289 TSNLCAEITLPTGLDHHGQQRTAVCCLSSINLETWLEWHDNPQFIEDVMRFLDNVLQDFI 348 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D ++ +AK + R++GLG+MGF S L L+IP+ S A I A + Sbjct: 349 DSAPDSMARAKYAAMRERSVGLGVMGFHSLLQSLNIPFESAMAKAWNIRIFRHIRAGADA 408 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ERG Sbjct: 409 ASRKLAEERGPCP------------------------------------------DAAEY 426 Query: 757 GMR--NSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+ S+ MAIAPTA+I+ I G S I+P N++++ +SG F+V N L L + Sbjct: 427 GVMERFSHKMAIAPTASISIIAGNSSPGIEPIAANVFLQKTLSGSFSVRNRHLQQLLAAK 486 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 DE S++ GS+ +++ + DD K + TAFE+D W+IE A+ R +I Q+QS+ Sbjct: 487 GRDDEETWSNITVSKGSVQHLDFLTDDEKAVFKTAFELDQRWVIEHAADRTPYICQSQSI 546 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 N++L + L I+ QAW G+K+ YY RS S + + K + Sbjct: 547 NVFLPANVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADTVSEKVQRHEHGDAANRTAP 606 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + + +S T+ EC CQ Sbjct: 607 APAPLVAAAASTTNYEECLACQ 628 >gi|206889598|ref|YP_002247982.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741536|gb|ACI20593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] Length = 741 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 181/655 (27%), Positives = 300/655 (45%), Gaps = 84/655 (12%) Query: 291 FAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLAL-------KETEKEKRAVEF 342 F +++L RY IE P+ F RVA +A E E + EF Sbjct: 8 FELTDNAIEVLKRRYLKKNEDGILIETPEELFTRVATAIAQIDTIYGKSEKEVYRTKEEF 67 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + L++S F+ ++PTL N+GT QLS+CF+ V D + GIF A++ A++ K GG G Sbjct: 68 FELMTSLRFLPNSPTLMNAGTPLGQLSACFVLPVEDSMEGIFDAVKYAAIIHKSGGGTGF 127 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 ++ +R G + T G S G + F+ V + AV QGG+R+GA L H D+ EF Sbjct: 128 SFSRLRPKGDVVGSTKGISSGPVSFMSVFDSATEAVKQGGRRRGANMGLLRVDHPDILEF 187 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 + + DD + + N + + + FMK V + + L +P Sbjct: 188 ITCK----DDLTKFTNFNISVGLTEEFMKAVINDEEYELINPRS---------------- 227 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 K+ +++ A ++ ++ ++ G P I F D N +P +G + ++ Sbjct: 228 -----------GKIVKRLKAKEVFDLIVHQAWKNGEPGIVFLDRINAANPTPSLGEIEAT 276 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 N C E L CNLGSINL +N D++ L T+ AV LDNVID N + Sbjct: 277 NPCGEQPLLPY----ESCNLGSINLAKMVKDNSVDWELLKDTVWKAVHFLDNVIDANKYP 332 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + +++ +R IGLG+MG+ L L IPY S EA+ +A+E M+FI AS ELA Sbjct: 333 LSLIEQNTKANRKIGLGVMGWADMLIQLKIPYNSKEALNLAEELMKFILHEGRLASKELA 392 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +ERG + ++ S++ + +RN+ Sbjct: 393 KERGTFPNYAKSIYYDKMP------------------------------------LRNAT 416 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821 IAPT T++ I G S I+P + + ++ M G VN + E+++ +W +++ Sbjct: 417 ITTIAPTGTLSIIAGCSSGIEPLFALCFARNVMDGTRLVEVNPYFKKEMEKIGIWSDSLA 476 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 + GSI I+ IP+++KKI TA E+ P I + Q+++D A S + L Sbjct: 477 DKIAET-GSIQGIKEIPEEIKKIFVTAHEVSPSEHIRMQAAFQQYVDNAVSKTVNLPNQA 535 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATS--VEKSTLKGVDGKLNAVPVTDPNS 933 + + + +Y A+ +G K R S ++K + +++ P P + Sbjct: 536 TEEDVREVYLLAYRLGCKGVTVYRDGSRHGQVIQKGKTESPALQISLKPRKRPET 590 >gi|15616798|ref|NP_240010.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681553|ref|YP_002467938.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682109|ref|YP_002468493.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471236|ref|ZP_05635235.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134536|sp|P57276|RIR1_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|25285846|pir||H84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) [imported] - Buchnera sp. (strain APS) gi|10038861|dbj|BAB12896.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621842|gb|ACL29998.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624396|gb|ACL30551.1| ribonucleotide-diphosphate reductase alpha subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085921|gb|ADP66003.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086492|gb|ADP66573.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087075|gb|ADP67155.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 761 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 188/789 (23%), Positives = 324/789 (41%), Gaps = 69/789 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG N ++ ++ A GL DVS V + Y+ ++ ++ +I Sbjct: 5 LFVTKRDGRKEKINLDKIHKVLNWASEGLDDVSVSQVELCSRIQFYNNITTINIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ +M L Sbjct: 65 AAADLISQDTPDYQYMAARLAIFHLRKKAYGQFEPPKLYDHVKKMVDLEK---------- 114 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L ++ + + + + + + RD F Y ++ L +Y +NG E Q + Sbjct: 115 -YDENLLKNYSYKEFLQMNSFIDHWRDMNFSYAAVKQLEGKYLIQNRVNGKIYESAQFLY 173 Query: 322 MRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + ++ L + + FYN +S+F TP + T Q SSC L D Sbjct: 174 ILISACLFSQYPKNVRMNYIHRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G IPF K + + Sbjct: 234 LNSINATTSSIVKYVSQRAGIGVNAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G + R ++ A I L +R+ Sbjct: 294 QGGVRGGAATIFYPIWHLEVESLLVLKNNRGIEENRVRHIDYAIQINKLMYQRMLSGDQI 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V DL+ + K+F+ Y YE+ + + + I A+ L+ M+ T Sbjct: 354 TLFSPSDVPDLYKAFFSDQKKFKKIYLQYEKNKNIRK----KTIKALDLFSLMMQERTST 409 Query: 557 GHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G ++ D CN+ S + + SNLC EITL + S G I L Sbjct: 410 GRIYVQNVDHCNLHSAFNPELSPIRQSNLCLEITLPTKSLNDVHDTDGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +VR LD ++D + + AKKS + R++G+G++ F L + Sbjct: 470 GKIKSLDDFKELSILSVRALDEILDYQNYPVLAAKKSAISRRSLGIGVINFAYYLAKNKV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E + ++ + AS ELA+E+GA S F + + G PID+ + Sbjct: 530 RYSDGSAHNLTHKTFEAMQYYLLEASCELAKEKGACSLFNHTNYYLGKLPIDTYKKYIDD 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N L W+ L+ ++K G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 I----CNEPLHLDWNLLRSKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFISIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G V E K+ L E + + + G + Sbjct: 646 VSKDGILRQVVP----EYKKLRLQYELLWD-IPNNTGYLQ-------------------- 680 Query: 853 PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 A QK+IDQ+ S+N + ++ K+L + ++ +GLKT YY + Sbjct: 681 ------LAGIMQKFIDQSISVNTHYDPARFLNNKIPMKQLLYDLLLSYKLGLKTLYYQNT 734 Query: 906 RSATSVEKS 914 R + +++ Sbjct: 735 RDGSEDDQN 743 >gi|159030367|emb|CAO91262.1| nrdA [Microcystis aeruginosa PCC 7806] Length = 770 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 216/783 (27%), Positives = 364/783 (46%), Gaps = 86/783 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ DG+ S N ++ +VE AC G + V+S + + + DG++ +++ LI Sbjct: 34 IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + +EP++ V R + L ++ L Y + ++ Sbjct: 93 CALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VVRGYQYGNYEKTVKTQVKNR 143 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + + + +L + + + D ++Y G ++ RY L E+PQ + Sbjct: 144 LYDERILI-YSEAELKEAGSWINPDWDIDYDYAGALLITSRYLLKN-----ELPQEALLT 197 Query: 324 VAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 ++ LA E + A +FY ++ +TP L N T L+SCF+ ++ D L Sbjct: 198 CSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDDSLE 257 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 IF + A ++K GG+G + + +R G+ + G S G+IP++K+ NDTA+AVNQG Sbjct: 258 SIFSEITNAARISKNGGGVGVNVSRIRSTGSWVMGKANASGGIIPWIKLLNDTAIAVNQG 317 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R GAV ++ WH+DV EFL+++ GD RR+ +D+ I D FM+RV A WTL Sbjct: 318 GRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVITKAEWTL 377 Query: 502 FSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P EV +L +L+G+EFE AY E D+ E+ +++KI+A L++ ++ ET Sbjct: 378 VDPYEVRTKLGIELAELWGEEFEEAYRLVEANLDK-EVLLYKKINARDLFKSIMRSQVET 436 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQ 615 G P+I FKD N +P +H G + S NLCTE N + + CNL S+NL Sbjct: 437 GMPYIAFKDTINRANPNKHDGYIPSVNLCTESFSNVTPDKTAHCCNLVSLNLANI----- 491 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +++ S + AVR+LDN IDI + AK N +R IG+G MG L + Y Sbjct: 492 -DKEEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKLSYN 550 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 + + E I + +S+ELA+ERGAY +F GS W QG + A+ + Sbjct: 551 NRSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL------IGAKPLEW 601 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 N W +L + ++ G+RNS+ AIAP + + + G + S+ P Y + Sbjct: 602 FLTNAVQPQRWQQLAEDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWA 661 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G + F+ + ++ Sbjct: 662 KGTVPIAPPFIEEAF--------------------------------WFYPENKNLEQQQ 689 Query: 856 LIESASRRQKWIDQAQSLNL--YLDE-----------PSGKKLDFIYRQAWLMGLKTTYY 902 ++++ + Q+WID S+ L L+E + K + AW +G K YY Sbjct: 690 VVKAIAAMQEWIDTGISMELLFNLNEGVYFPAEPNRCLTAKDIFDTLIMAWELGCKAIYY 749 Query: 903 LRS 905 +R+ Sbjct: 750 VRT 752 >gi|254524235|ref|ZP_05136290.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] gi|219721826|gb|EED40351.1| ribonucleoside-diphosphate reductase, alpha subunit [Stenotrophomonas sp. SKA14] Length = 787 Score = 430 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 245/800 (30%), Positives = 374/800 (46%), Gaps = 93/800 (11%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIV--LSETYKNMYDGLSESDLETALI 203 I + G + F+++RL+ ++ + + + + LS DL LI Sbjct: 29 ITKEAGNRRLPFDAERLQRSIDTVHAEFPQLDVSDYRRVVQAMVERKPSLSADDLVDLLI 88 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259 + + ++ P + + AR L +L + + +++ Y Y Sbjct: 89 REAESRVDLVAPEWEQFAARIYLRRLYKRA--------SRNRFYDVSLKYGSYVGLQESL 140 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 + G+ + + +L ++ ERD F Y GL +L RY E+PQ Sbjct: 141 ADRGIYSNDILRCYSKEELQQAGEMIEPERDRLFAYNGLYLLATRYLASDRSREVYELPQ 200 Query: 319 AFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 ++ +A+ L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ T Sbjct: 201 ERWLTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT 260 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L GI+ + + A ++K+ GG+G VR GA I G S GV+P++K N+TA Sbjct: 261 VDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGAPIRGVPNSSGGVVPWIKQLNNTA 320 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+V+Q G+RKGAV YL+ WH D+E FLDLR N GD R R HD+ T+ +PDLFM+ V + Sbjct: 321 VSVDQLGQRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCVPDLFMEAVER 380 Query: 496 NAGWTLFSPDEVSDLHDLYGKEF--EIA----YENYERQADRGEIKVFRKISAVALWRKM 549 A W LF P EV Y ++F E + + + E R + A+ L++++ Sbjct: 381 RADWYLFDPHEVKSAKGWYLQDFYDEKRGSGSFRDRYAELVADERISRRTVKAIDLFKRI 440 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------- 595 + ETG+P++ ++D N ++P +H G+V+SSNLCTEI N S Sbjct: 441 MLSQLETGNPFLFYRDEVNRKNPNKHAGMVYSSNLCTEILQNMSPTRMIQEIVSGDQIVT 500 Query: 596 -----ETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 + VCNL SINL + D L I VR+LDNVID+N + +A Sbjct: 501 TRRAGDFVVCNLSSINLGRAISAPDDLLATDVLERLIPIQVRMLDNVIDLNALPVPQATI 560 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 +N +RAIGLG G+ L I + SP+A ++AD E I+F I AS +LA+E+G+Y Sbjct: 561 TNRKYRAIGLGTFGWHHLLAQQAIQWESPDAEQLADRLYERINFLTIQASAQLAKEKGSY 620 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F GS W G + D S WD L + V T G+RN +A+AP Sbjct: 621 PMFAGSDWHNGRYFSD--------------RGYSGADWDSLAREVATHGLRNGWLLAVAP 666 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + A I G + SIDP Y Y + V Sbjct: 667 NMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP------------------------ 702 Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + + A+++D + +RRQ+ +DQ+ S NLY+ L Sbjct: 703 -------GLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNLYVPSTIRASTLL 755 Query: 887 FIYRQAWLMGLKTTYYLRSR 906 ++ AW GLKTTYY+RS Sbjct: 756 ELHLSAWREGLKTTYYVRSN 775 >gi|290473789|ref|YP_003466663.1| ribonucleoside diphosphate reductase 1 subunit alpha [Xenorhabdus bovienii SS-2004] gi|289173096|emb|CBJ79869.1| ribonucleoside diphosphate reductase 1, alpha subunit [Xenorhabdus bovienii SS-2004] Length = 763 Score = 430 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 188/802 (23%), Positives = 310/802 (38%), Gaps = 69/802 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG + ++ +V A GL++VS V + YDG+ +D+ +I Sbjct: 4 SLLVTKRDGHKEQIDLDKIHRVVAWAAEGLKNVSVSQVELRSQIQFYDGIKTADIHETMI 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI + P+Y + AR + LR++ ++ R + Sbjct: 64 KAAADLISGDAPDYQYLAARLAIFHLRKKAYGQFEPPAL-----------HDHVVRMVNL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G + L E + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDKHLLEDYSKEEFEQMDSFINHLRDMDFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSTYPKETRLSYIRRFYDAVSTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRDGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYTQYESDVTIRK----ERIKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPAVAPVRQSNLCLEIALPTKPMNNINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + +L AVR LD+++D + I AK+ + R +G+G++ F L Sbjct: 469 LGAINNLTELEELAELAVRALDSLLDYQDYPIIAAKQGSMGRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + ++ E I ++ + AS LA+E+GA F + + QG+ PID+ + Sbjct: 529 VRYSDGSANNLTHKTFEAIQYYLLKASNGLAKEKGACPWFGETTYAQGILPIDTYKKTLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + W+ L+ ++ G+RNS A+ P+ T + I + I+P + + Sbjct: 589 ----TLTREPLHMDWETLRNDIRQHGLRNSTLSALMPSETSSQISNATNGIEPPRGYISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V ++ + DG + Sbjct: 645 KASKDGILRQVVPEYNRLKGAY-----ELLWQMPGTDGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTTYYLR 904 QK+IDQ+ S N D +L A+ G+KT YY Sbjct: 681 -------LVGIMQKFIDQSISANTNYDPARFPNGKVPMNQLLKDLLLAYKYGVKTLYYHN 733 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 +R + L+ V ++ Sbjct: 734 TRDGAEDVQGDLEEVVESADSD 755 >gi|304414249|ref|ZP_07395617.1| ribonucleotide reductase alpha subunit [Candidatus Regiella insecticola LSR1] gi|304283463|gb|EFL91859.1| ribonucleotide reductase alpha subunit [Candidatus Regiella insecticola LSR1] Length = 762 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 194/793 (24%), Positives = 316/793 (39%), Gaps = 73/793 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +V+ A GL +VS V ++ YDG+ +D+ +I Sbjct: 4 SLLVTKRDGRKERINLDKIHRVVDWAAEGLHNVSVSQVELRSHIQFYDGIKTADIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI + P+Y + AR + LR++ P E+ + + Sbjct: 64 KAAADLISTDAPDYQYLAARLAVFHLRKKAYGQFEPPPL-----------FEHVSKMVAM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 KKYDQHLLADYSAAEFAEMESFIDHWRDLNFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ VA L + FYN +S+F TP + T Q SSC L D Sbjct: 173 YILVAACLFSSYPRESRLDYVKRFYNAISTFKISLPTPIMAGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I A G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINAASSAIVKYVSQRAGIGINAGRLRALGSPIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L +R+ + Sbjct: 293 SQGGVRGGAATLFYPLWHLEVESLLVLKNNRGVEDNRVRHMDYGVQINKLMYQRLLKGED 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE+ ++I AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQTEFERLYMKYEQDQTIR----QQRIKAVDLFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN SP V SNLC EI L + G I L A N Sbjct: 409 TGRIYIQNVDHCNTHSPFDAKVAPVRQSNLCLEIALPTQPLNDINDETGEIALCTLSAFN 468 Query: 615 QFDYDK---LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+ L AVR LD ++D + I A+ + R +G+G++ L Sbjct: 469 LGAIDRLEELEELATLAVRALDALLDYQDYPIAAARNGSLGRRTLGIGVINLAYYLAKNG 528 Query: 672 IPYASPEAVE----IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y++ + + + + E I ++ + AS +LA+E+GA F + + QG+ PID+ Sbjct: 529 VGYSNADLKKNANSLTHRTFEAIQYYLLKASNDLAREKGACPWFDQTTYAQGLLPIDTYK 588 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + N L W+ L++ +K G+RNS A+ P+ T + I + I+P Sbjct: 589 KYLDEI----CNEPLHLDWEGLRQNIKQWGLRNSTLSALMPSETSSQISNATNGIEPPRG 644 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + +K++ G V + ++ D+ +DG + Sbjct: 645 YVSIKASKDGILRQVVPEYERLKEHY-----QLLWDIPNNDGYLQ--------------- 684 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTT 900 QK++DQA S N ++ K+L A+ +G+KT Sbjct: 685 -----------LVGIMQKFVDQAISANTNYDPTRFSDNKVPMKQLLKDLLTAYKLGIKTL 733 Query: 901 YYLRSRSATSVEK 913 YY +R + Sbjct: 734 YYHNTRDGADDVQ 746 >gi|229916486|ref|YP_002885132.1| ribonucleotide-diphosphate reductase subunit alpha [Exiguobacterium sp. AT1b] gi|229467915|gb|ACQ69687.1| ribonucleoside-diphosphate reductase, alpha subunit [Exiguobacterium sp. AT1b] Length = 755 Score = 429 bits (1103), Expect = e-117, Method: Composition-based stats. Identities = 232/782 (29%), Positives = 368/782 (47%), Gaps = 91/782 (11%) Query: 159 SKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDL-ETALIFSSRTLIE-KEPNY 216 + +++ + +S + + + D+ L + +++ +EP++ Sbjct: 17 LADVSSLIQSIQTRYPHLSVERYEERAIRALETKTLTQDVVYDLLTMHALDMLKAEEPDW 76 Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 V L +L E + + + + + L ++ Sbjct: 77 TFVATEMYLNRLYLEAARNRGYEASM-----RYGNFYQLVETLTSKRIFTSALLDTYSKE 131 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE- 334 D+ +L + RD F Y+GL+ L DRY + + E+PQ FM +AM L KE E Sbjct: 132 DMDHLETLIDPSRDRLFTYIGLRTLSDRYLGRDHVKNLYELPQERFMVIAMTLMQKEDET 191 Query: 335 -KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 + K E Y LS+ + +TPTL N+G + QLSSCF+ TV D L GI+ + + A L Sbjct: 192 TRLKLVEEAYWALSNLYMTVATPTLSNAGKSYGQLSSCFIDTVDDSLRGIYDSNTDVATL 251 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+G +R G+ I G G S G +P++K N+TAV+V+Q G R+G++ YL+ Sbjct: 252 SKGGGGIGVYLGKIRSRGSDIKGFKGVSSGALPWMKQLNNTAVSVDQLGMRQGSIAVYLD 311 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV------ 507 WH D+ EFLD + N GD+R RTHD+ T +PDLFM+ V W LF P E+ Sbjct: 312 IWHKDIFEFLDAKLNNGDERLRTHDLFTGVCLPDLFMRTVEARGDWHLFDPHEIRTVMGY 371 Query: 508 ----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 G F Y + + + A+ L ++ + ETG P++ F Sbjct: 372 SLEDYFDESENGGSFTEKYMECVNTPELSRV----TVPAIDLVKRYMRSQLETGTPYMFF 427 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVCNLGS 604 +D N +P +H G+++SSNLC+EI N S + VCNL S Sbjct: 428 RDAVNRANPNKHAGMIYSSNLCSEIAQNMSATTIEEEYTQDGKIVITKTPGDFVVCNLSS 487 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 I L D L I +R+LDNVID+N + +A +N +RA+GLG G+ Sbjct: 488 IALARAVKA-----DVLERLIPIQMRMLDNVIDLNTIEVPQAMITNQKYRAVGLGTFGWH 542 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 L L I + S +AV+ A++ E I++ I AS+ELA+E+GA+ F+GS W G + Sbjct: 543 HLLALEGIRWESVDAVQYAEKLYEKIAYLTIQASMELAKEKGAFGVFEGSEWHTGEYF-- 600 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R+ + + L WD L + V G+RN+ MA+AP ++ A I G + SIDP Sbjct: 601 ------KRRNYRSHDD---LDWDGLAEAVHQNGVRNAYMMAVAPNSSTAIIAGSTASIDP 651 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 Y+ +Y + + V + + D Sbjct: 652 VYKKVYSEEKKNYKIPVT-------------------------------VPDLTPDTNWF 680 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + +AFEID +W I + RQ+ IDQA S NLY+ ++ +L ++ +AW +G+K+ YY Sbjct: 681 YKSAFEIDQLWSIRQNAARQRHIDQAISFNLYVKNDVKATELLAMHLEAWSLGMKSIYYT 740 Query: 904 RS 905 RS Sbjct: 741 RS 742 >gi|154505111|ref|ZP_02041849.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149] gi|153794590|gb|EDN77010.1| hypothetical protein RUMGNA_02624 [Ruminococcus gnavus ATCC 29149] Length = 763 Score = 429 bits (1102), Expect = e-117, Method: Composition-based stats. Identities = 224/727 (30%), Positives = 348/727 (47%), Gaps = 93/727 (12%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 P + + AR L + + Q+ T E+ Y + + + + E Sbjct: 86 PKWEFIAARLLYFQ-------FSFHLKQEETRRELSDFYKKLVY-LTRQNLYGSYILEHY 137 Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-IEMPQAFFMRVAMGLALKE 332 +L+ LK ER+ F + GL +L RY + + +E PQ F+ +A+ LA+ E Sbjct: 138 SREELLLAETYLKAERNNLFTFSGLDLLLKRYVIRTHDHIPLESPQEMFLGIALHLAMNE 197 Query: 333 -TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391 ++ +FY++LS +TPTL N+ + QLSSCF+ TVPD L GI+ ++ A Sbjct: 198 RNDRMLWVKKFYDMLSRLEVTMATPTLSNARKPYHQLSSCFIDTVPDSLEGIYRSIDNFA 257 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 ++K+ GG+G + VR G++I G G + GVI ++++ NDTAVAV+Q G R+GAV Y Sbjct: 258 QVSKFGGGMGMYFGKVRASGSNIRGFEGAAGGVIRWIRLVNDTAVAVDQLGMRQGAVAVY 317 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEV-- 507 L+ WH D+ EFL LR N GDDR + HD+ A PDLF K ++ W L P E+ Sbjct: 318 LDVWHRDLPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMAKEDMDQNWYLMCPHEIFQ 377 Query: 508 ---SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 L D +G+E+E Y + + A + R ++ + R +L ETG P+ + Sbjct: 378 AKGYHLEDYFGEEWERRYLDCVQDARISK----RTVTLKDIIRLVLRSAAETGTPFTFNR 433 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLN-----------------------SSSEETAVCN 601 D N +P H G+++ SNLCTEI N + E VCN Sbjct: 434 DTVNRMNPNGHAGMIYCSNLCTEIAQNMQAIEEVSKEVQTTDGDTVVVTVTRPGEFVVCN 493 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L S++L D + + TAVR LDNVID+N + AK +N +R+IGLG+ Sbjct: 494 LASLSLGHLPVT---DTSYMEEIVSTAVRALDNVIDLNFYPTPYAKLTNQKYRSIGLGVS 550 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G+ L I + S E ++ AD E I++ AI AS LA+E+ +YS F GS W G Sbjct: 551 GYHHMLAKHGIIWESEEHLKFADTVFETINYAAILASTNLAEEKESYSLFNGSDWQSG-- 608 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 W L+K+V T GMRN+ +A+APT++ + I G + Sbjct: 609 ------------AYFEKRDYHSEKWLALQKKVATQGMRNAYLLAVAPTSSTSIISGTTAG 656 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 +DP + +++ V + Sbjct: 657 LDPILKRYFLEEKKGSMLPRVAP-------------------------------ELSPAT 685 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTT 900 + A ID + I + RQ+ IDQAQS+N+Y+ ++ + +++ +Y +AW G+KT Sbjct: 686 YWYYKNAHLIDQTYSIRACGVRQRHIDQAQSMNIYITNDFTMRQIFNLYLKAWEEGVKTI 745 Query: 901 YYLRSRS 907 YY+RS+S Sbjct: 746 YYVRSKS 752 >gi|166367093|ref|YP_001659366.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa NIES-843] gi|166089466|dbj|BAG04174.1| ribonucleotide reductase subunit alpha [Microcystis aeruginosa NIES-843] Length = 770 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 215/783 (27%), Positives = 361/783 (46%), Gaps = 86/783 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++++ DG+ S N ++ +VE AC G + V+S + + + DG++ +++ LI Sbjct: 34 IRVIRRDGSTTSLNIGKIRDVVEWACEG-KKVNSIALEAGLTTRLRDGITTREIQDNLIN 92 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + + +EP++ V R + L ++ L Y + +++ Sbjct: 93 CALEMCSPEEPDWRYVAGRLHIWSLWKDTL---------VARGYQYGNYEKTVKTQVKKL 143 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMR 323 + + + +L + + + D ++Y G ++ RY L E+PQ + Sbjct: 144 LYDERILI-YSEAELKEAGSWINSDWDIDYDYAGALLITSRYLLKN-----ELPQEALLT 197 Query: 324 VAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 ++ LA E + A +FY ++ +TP L N T L+SCF+ ++ D L Sbjct: 198 CSLLLATVEEPANRLPWAKKFYQAIAQRKISLATPILANLRTPKGSLTSCFILSIDDSLE 257 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 IF + A ++K GG+G + + +R G+ + G S G+IP++K+ NDTA+AVNQG Sbjct: 258 SIFDEITNAARISKNGGGVGVNVSRIRATGSWVMGKANASGGIIPWIKLLNDTAIAVNQG 317 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R GAV ++ WH+DV EFL+++ GD RR+ +D+ I D FM+RV A WTL Sbjct: 318 GRRAGAVTIGVDIWHLDVPEFLEMQTENGDQRRKAYDVFPQLVITDEFMRRVINKAEWTL 377 Query: 502 FSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P EV + +L+G+EFE AY E D+ EI +++KI+A L++ ++ ET Sbjct: 378 VDPYEVRNKLGIELAELWGEEFEEAYRLVEANLDQ-EILLYKKINARDLFKSIMRSQVET 436 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFANNQ 615 G P+I FKD N +P +H G + NLCTE N + + CNL S+NL Sbjct: 437 GMPYIAFKDTINRANPNKHDGYIPGVNLCTESFSNVTPDKTAHCCNLVSLNLANI----- 491 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D +++ S + AVR+LDN IDI + AK N +R IG+G MG L + Y Sbjct: 492 -DREEIESNCQIAVRILDNTIDITNPPFDNAKNHNDKYRTIGVGAMGLADWLAKRKLSYN 550 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 + + E I + +S+ELA+ERGAY +F GS W QG + A+ Sbjct: 551 NLSEI---SNLFEEIGYWCTYSSMELAKERGAYQAFLGSEWSQGKL------IGAKPVAW 601 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 N W +L ++ G+RNS+ AIAP + + + G + S+ P Y + Sbjct: 602 FLNNAVQPQRWQQLATDIQRFGIRNSHITAIAPNTSSSLVQGCTASVLPVYSRFFYDKWA 661 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 G + F+ ++ ++ Sbjct: 662 KGTVPIAPPFIEEAF--------------------------------WFYSENKNLEQQQ 689 Query: 856 LIESASRRQKWIDQAQSL----NLY----LDEP-----SGKKLDFIYRQAWLMGLKTTYY 902 ++++ + Q+WID S+ NL E + K + AW +G K YY Sbjct: 690 VVKAIATMQEWIDTGISMELLFNLNEGVYFPEEPNRCLTAKDIFDTLVMAWELGCKAIYY 749 Query: 903 LRS 905 +R+ Sbjct: 750 IRT 752 >gi|146304479|ref|YP_001191795.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera sedula DSM 5348] gi|145702729|gb|ABP95871.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera sedula DSM 5348] Length = 823 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 205/868 (23%), Positives = 362/868 (41%), Gaps = 114/868 (13%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 K+ ++ DG F +++ + L D + + +N D ++ L + Sbjct: 12 KISVIKRDGRREEFKLEKILSKLGP----LHDEIVDGIAKDVIQNSTDNVINTRSLADIV 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + P + +++L ++ V Sbjct: 68 ERNLIEGSLEHPELMDLAKKYVLARIYNHVFGK--------------------------- 100 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320 +FD +D Y L++L RY L IE PQ Sbjct: 101 --------GKWSEFD----------PKDLLISYNALKVLEARYLLKDPETLRYIETPQMM 142 Query: 321 FMRVAMGLALKETEKEKRA---VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 F RVA LA E +K + +FY ++SS F+ +TP L NSGTR LS+CF+ V Sbjct: 143 FKRVASYLAKVEQDKNVQQDAAQKFYEIMSSLKFVPNTPALMNSGTRLGILSACFVLPVR 202 Query: 378 DDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 D + GI+ L+ A++ + GG G D++ +R G + T G + G + F+K+ + Sbjct: 203 DSMTSPSGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFMKIFD 262 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V QGGKR+GA + WH D+E+F+ + D + + N + + D FM+ Sbjct: 263 VSTDVVKQGGKRRGANMGVMHAWHADIEDFIHAKTGELKDV-QLQNFNISVGVYDYFMEA 321 Query: 493 VTQNAGWTLFSPDEV--SDLHDLYGKEFEIAYENYER----------------------- 527 V + L +P + Y Y E Sbjct: 322 VMKEEQVPLITPRKTKIPGTDHEYYIVKARNYMREEWVQEEILRELEEKGSVYLDESKII 381 Query: 528 ------QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E V R ++A L+ +++ +++G P + F D N R P ++G + + Sbjct: 382 TVDEALAIAEKEGAVIRWVNARTLFEQIVKGAWDSGDPGLLFIDEINRRHPTWYLGKIQA 441 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVID 637 +N C E L CNLGS+NL D+D LA+TIR AVR LDNV+D Sbjct: 442 TNPCGEEPLLP----WESCNLGSLNLEKFVKERDGTPYIDWDDLANTIRYAVRFLDNVVD 497 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 N + + + +++ R +GLG+MG AL L IPY S +AV ++ +FI +HA+ Sbjct: 498 ANRYPLPQIEQATKRTRKVGLGVMGLARALIKLGIPYDSVDAVYVSYYLAKFIYYHAMKT 557 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGL---------LAEVRDELAMNRTSRLPWDE 748 S+ELA+E+G++ ++ + + + M+ +L Sbjct: 558 SIELAKEKGSFPAYDPVRYKDVWESARELDEILTISGIRGKPSDYAKKLMSEAEKLDVTV 617 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 LK G+RN+ +++APT TI+ I G S SI+P + ++++ G F ++ + Sbjct: 618 LKDMRLKYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGKFMEIDPLFLE 677 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L++ +L ++ + G +G+ +P ++K+ TA E++PM+ + + Q+W D Sbjct: 678 YLRKYELDTPDVVKKIAET-GEVGDNPFVPKTIRKLFRTAHEVEPMYHVLHQAAWQQWND 736 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAV 926 S + L E ++ +Y AW +G+K R +S + V LK + + Sbjct: 737 SGTSKTINLRSEEPADTVEKVYMTAWKLGIKGITVYRDKSKSQQVIYFGLKKEREEKSKA 796 Query: 927 PVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + C+ C+ Sbjct: 797 LPSSLRMEKKFVEVSE--NFAGGCKTCE 822 Score = 48.7 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 24/103 (23%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + + VIKR+G F KI ++ G +I+ + + + Sbjct: 9 SLSKISVIKRDGRREEFKLEKI--------LSKLGPLH------DEIVDGIAKDVIQNST 54 Query: 85 QHNKSALIVHIEDIQDQVECSLMQS-----GHHKITREYVLYR 122 + + + D VE +L++ + ++YVL R Sbjct: 55 DNVINTRSLA-----DIVERNLIEGSLEHPELMDLAKKYVLAR 92 >gi|15613064|ref|NP_241367.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus halodurans C-125] gi|10173114|dbj|BAB04220.1| ribonucleoside-diphosphate reductase alpha subunit [Bacillus halodurans C-125] Length = 726 Score = 428 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 236/743 (31%), Positives = 357/743 (48%), Gaps = 94/743 (12%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 LE+ + + + ++P + +TAR LE+L V + + E Sbjct: 34 LESMRMKAMDEISAEQPEWTFITARIYLEELYNSVKEQRGL-------AKPYTQFYELIE 86 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM 316 +++G+ + L ++ L L E+D F Y+GL+ L DRY + + +E+ Sbjct: 87 VLVDKGIYEKDLLNRYTKEEINELGEHLNQEKDELFTYIGLKTLADRYLARLYDRTLMEL 146 Query: 317 PQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 PQ FM +AM L KE +++ E Y LS+ + +TPT N+G QLSSCF+ Sbjct: 147 PQERFMVIAMSLMKKEVNSQRLSLVKEAYWALSNLYMTVATPTFANAGKAVGQLSSCFID 206 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV D L GIF + + A ++K GGLG +R G+ I S GV+P++K N+ Sbjct: 207 TVDDSLRGIFDSCTDAATVSKSGGGLGIYLGKIRAKGSSIKNYQNVSSGVLPWMKQLNNV 266 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 AV+V+Q G+R+GA+ YL+ WH D+ FLD + N GD+R+RTHD+ TA +PDLFM+ V Sbjct: 267 AVSVDQLGQRQGAIAVYLDIWHKDIFSFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVE 326 Query: 495 QNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 W LF P E+ F YE D ++ A+ Sbjct: 327 ARDNWYLFDPHEIRQKMGFSLEDSYDEQKGSGTFRERYEACVNNPDLSRT----EVPAIE 382 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE--------- 595 + ++++ ETG P++ ++D N +P +H G+V+ SNLCTEI N S Sbjct: 383 IMKRIMISQLETGSPFMYYRDEANRMNPNKHEGMVYGSNLCTEIIQNMSPTTVVEEKTED 442 Query: 596 ----------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 + VCNL S++L + D L I VR+LDNVID+N +++ Sbjct: 443 GKILITKQPGDYVVCNLSSLSLARVVED-----DVLERLIPIQVRMLDNVIDVNRIEVKQ 497 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 A+++N +RAIGLG G+ L I + S EA+ ADE E I++ I AS++LA+E+ Sbjct: 498 AEQTNQKYRAIGLGTYGWHHLLAKKGIAWESEEAIRYADELYETINYLTIQASMKLAEEK 557 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GAY F GS W+ G + + + W EL ++VK G+RN +A Sbjct: 558 GAYPMFGGSDWETG--------------EYFERRQYTTDKWTELAEQVKEKGLRNGYLLA 603 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 +AP AT A I G + SIDP +Q YV+ + V Sbjct: 604 VAPNATTALIGGTTASIDPIFQKTYVEEKKNYRIPVTAP--------------------- 642 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + + +A+ ID W I RQ+ +DQ+ S NLY+ K+ Sbjct: 643 ----------DLSPETTWYYKSAYHIDQTWSIRQNGARQRHVDQSISFNLYVSNTIRAKE 692 Query: 885 LDFIYRQAWLMGLKTTYYLRSRS 907 L ++ AW GLKTTYYLRS S Sbjct: 693 LLELHLLAWKEGLKTTYYLRSTS 715 >gi|331035508|gb|AEC53065.1| ribonucleotide-diphosphate reductase subunit A [Synechococcus phage S-CRM01] Length = 770 Score = 428 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 197/839 (23%), Positives = 342/839 (40%), Gaps = 95/839 (11%) Query: 138 DAPIAPKLKIMMDDGT-LISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 + ++ + +G + ++ +VE AC GL VS + ++ YDG++ Sbjct: 2 EEMTTKEIYVKKRNGRGTEPLDLDKIHTMVEAACDGLSRVSPSQIEIQSQLQFYDGITTE 61 Query: 197 DLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 D++ LI S+ LI + PNY AR LL LR+ + ++ Sbjct: 62 DIQATLIRSAADLISLENPNYQYAAARLLLFSLRKSIYHKMWDSWSLQDQ---------- 111 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSR 313 I+ V + D + L N + ++RDF F Y ++ +YD+Y G Sbjct: 112 IAYGIDNNVYDPAILTYYTDEEFEILNNYIDHDRDFLFTYAAMRQVYDKYLVQDRSTGKV 171 Query: 314 IEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 E PQ +M A + + +Y+ +S + TP + T+ Q +SC Sbjct: 172 YETPQFCYMLNAATTFHKYPKATRLNYVKAYYDAISKHYLNLPTPNIAGVRTKTRQYASC 231 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L DDL IF + + G+G + +R LG + GVIP+LK Sbjct: 232 VLIETDDDLRSIFTSATAVGLYTSQRAGIGLNPGRIRALGDKVRNGEISHTGVIPYLKHF 291 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 A Q G R G A+ WH ++++ L L+ N G + R ++ + + LF + Sbjct: 292 ETAAKCTTQNGLRGGGATAHFPIWHKEIQDILVLKNNKGTEDNRVRKLDYSIQLSSLFYQ 351 Query: 492 RVTQNAGWTLFSPDEVSDLHDLY-GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 R ++ TLFSP++V L+D + +EF+ Y YE +D +++ I A L+ +++ Sbjct: 352 RFIDDSYITLFSPNDVPGLYDAFATEEFDELYREYEANSDIPQVR----IPARQLFMELI 407 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602 ETG +I D CN S + V SNLC EITL + E A+C L Sbjct: 408 KERAETGRIYIMNMDHCNTHSSF--LVSVFMSNLCQEITLPTRPLFDIHDIYGEIALCIL 465 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 +IN+ + + AVR LD +ID + + A+ S + R++G+G +G Sbjct: 466 AAINVGKIRHLH-----DMQHLCDLAVRALDELIDYQEYPLVAAEISTKSRRSLGVGFIG 520 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y +A+ E E + ++ + AS LA+E+GA S F + + G+ P Sbjct: 521 VAQYLAKKKVKYGDKQALVYMHELTEALQYYLLEASNNLAKEKGACSKFNETKYSDGLLP 580 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 ID + +L W+ L++++K G+RNS A P+ + + +C + I Sbjct: 581 IDHYKKDVDGI----CPPNYKLDWEVLREKIKVFGLRNSTLSAQMPSESSSVVCNTTNGI 636 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P L VK + G + G+ LK Sbjct: 637 EPPRDYLSVKKSKKGTLKQIVP----------------------SYGT----------LK 664 Query: 843 KIHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWL 894 + +++ + + QK++DQ+ S N +E L QA+ Sbjct: 665 NDYTLLWDMESMEGYLNIVAVMQKFMDQSISANTSYNPKNYPNNEVPASILIMDLLQAYK 724 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +G+KT YY + + E++ ++ + + D C+ C Sbjct: 725 LGIKTLYYHNTYDSKGEEETLVEN---------------KVLDEDVLALLECDETCDSC 768 >gi|126658927|ref|ZP_01730069.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] gi|126619725|gb|EAZ90452.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] Length = 768 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 216/786 (27%), Positives = 361/786 (45%), Gaps = 86/786 (10%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 K+++ DG+ + N ++ +V AC+ +DV+S + + + DG++ +++ Sbjct: 29 ESKIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNSIALEAGLTTRLRDGITTREIQDN 87 Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI + + EP++ V R + L ++ L Y + Sbjct: 88 LINCALEMCSPNEPDWRYVAGRLHIWSLWKDTL---------VNRGYQYGNYETTVKTKV 138 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 E G L +L + + + D ++Y G +L RY L E+PQ Sbjct: 139 ETGQYDNRLLT-YSKTELKEAGSWINPDWDTDYDYAGAVLLTSRYLL-----PEELPQEA 192 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 + A+ LA E + A FY ++ +TP L N L+SCF+ ++ D Sbjct: 193 LLSCALLLATVESPENRLPWAKRFYEAIARRKVSLATPILANLRVPGGSLTSCFILSIDD 252 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L IF + A ++K GG+G + + +R G+ + G N S G+IP++K+ NDTA+AV Sbjct: 253 NLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGIIPWIKLLNDTAIAV 312 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ + D FM+RV Sbjct: 313 NQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKEQ 372 Query: 499 WTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P EV + +L+G++FE AY E + DR EI ++++++A L++ ++ Sbjct: 373 WTLVDPYEVREKLGIELAELWGEKFEEAYRLIEAEIDR-EITLYKRVNARELFKTIMRSQ 431 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFA 612 ETG P++ FKD N +P +HVG + NLCTE N + +E CNL S+NL Sbjct: 432 VETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESFSNVTPGKEAHCCNLVSLNLANI-- 489 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D+L + AVR+LDN IDI + AK N +R IG+G MG L + Sbjct: 490 ----EEDELNYLCKIAVRILDNTIDITNPPFDDAKSHNDRYRTIGVGCMGLADWLAKQGL 545 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y + + E + + S+ELA+ER Y +F GS W +G+ + ++ Sbjct: 546 TYENIAEI---SNIFEEVGYWCTQTSMELAKERSPYDAFAGSDWSKGLL------IGSKP 596 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + N + W +L + +KT G+RNS+ AIAP + + + G + SI P Y + Sbjct: 597 VNWFVENANKKERWIQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYD 656 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G + + + W + ++ Sbjct: 657 KWAKGTVP-IAPPFIKD----SFW---------------------------FYHENKTLE 684 Query: 853 PMWLIESASRRQKWIDQAQSL----NLYL-----DEP----SGKKLDFIYRQAWLMGLKT 899 ++++ S Q+WID S+ NL +EP + K + AW G K Sbjct: 685 QQKVVKAVSTIQQWIDTGISMELLFNLNQGVYFPNEPERCLTAKDIFETLLLAWKEGCKA 744 Query: 900 TYYLRS 905 YY+R+ Sbjct: 745 IYYVRT 750 >gi|288554978|ref|YP_003426913.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pseudofirmus OF4] gi|288546138|gb|ADC50021.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pseudofirmus OF4] Length = 723 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 241/738 (32%), Positives = 361/738 (48%), Gaps = 87/738 (11%) Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + L +EP++ V A + LR ++ +P+ +PE+ IE Sbjct: 34 ASHALNELSVEEPHWTYVAAACYINHLREQIAEQRGVEPKVL-----SASFPEFLKAQIE 88 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAF 320 +G+ L +L LA L+ RD F Y+G++ L DRY N +E+PQ Sbjct: 89 KGIYDGRLDS-YSTDELYELALTLEPARDQKFTYIGIKTLADRYLAKDFNDQIVELPQER 147 Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +M +AM L +E + + E Y LS + +TPT+ N+G QLSSCF+ TV D Sbjct: 148 WMVIAMTLMSEENRGSRLELVKEAYWALSHLYMTVATPTMSNAGKVGGQLSSCFIDTVED 207 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL IF + + A ++K GGLG +R G+ I G S GVIP++K N+ AV+V Sbjct: 208 DLRSIFDSCTDAATVSKNGGGLGMYLGKIRARGSSIRGFKNVSSGVIPWMKQLNNVAVSV 267 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+R+GA+ YL+ WH D+ FLD + N GD+R+RTHD+ TA +PDLFM+ V + Sbjct: 268 DQLGQRQGAIAVYLDVWHKDIFAFLDAKLNNGDERQRTHDLFTAVSLPDLFMEAVEKRDT 327 Query: 499 WTLFSPDEVSDLHDLYGKEF-------EIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 W LF P EV ++F + YE+ A E+ +I A+ + ++++ Sbjct: 328 WYLFDPHEVRVKMGFSLEDFYDEKKGDGEFRKRYEQCAANDELSRT-EIPAIEVMKRIML 386 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------------ 593 ETG P++ ++D N +P +H G+++ SNLCTEI N S Sbjct: 387 SQLETGSPFMFYRDTANRLNPNKHKGMIYGSNLCTEIMQNMSATTVVEETLEDDTISIKK 446 Query: 594 -SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + VCNL S++L F++ D + ++ VR+LDNVID N +++A+K+N Sbjct: 447 QPGDYVVCNLSSLSLAQVFSD-----DVVERVVKIQVRMLDNVIDQNSIGVKQAEKTNKM 501 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 +RAIGLG G+ L I + S E+V + E I+ AI AS ELA E+GAY ++ Sbjct: 502 YRAIGLGTYGWHHHLAKRGIAWESEESVWEVERVYERINQAAIKASAELAAEKGAYPHYE 561 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 GS W G F + WDE++ + GMRN MA+AP AT Sbjct: 562 GSDWQTGEFFSE--------------RGYEGAEWDEIRSVISKHGMRNGYVMAVAPNATT 607 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + I G + SIDP +Q YV+ + VV +L R W Sbjct: 608 SLIAGSTASIDPLFQKYYVEEKKNYRIPVVAP----DLDARTTW---------------- 647 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + A +D W I + RQ+ +DQ S NLY+ + K+L ++ Sbjct: 648 -----------YYKPAHLVDQTWSIRQNAARQRHVDQGISFNLYVPNNVKAKELLDLHLL 696 Query: 892 AWLMGLKTTYYLRSRSAT 909 AW GLKTTYY+RS S + Sbjct: 697 AWKEGLKTTYYVRSTSLS 714 >gi|332185596|ref|ZP_08387344.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas sp. S17] gi|332014574|gb|EGI56631.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas sp. S17] Length = 638 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 206/679 (30%), Positives = 302/679 (44%), Gaps = 95/679 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G + L DRY L E Q F+RVA A A Y+ Sbjct: 46 VDHARDARLTDFGKETLNDRYLL-----PGESYQDLFVRVASAYADNAE----HAQRLYD 96 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SC+L +VPD L GI EN LA GG+G W Sbjct: 97 YISKLWFMPATPVLSNGGTGRGLPISCYLNSVPDSLDGIVTTWNENVWLASRGGGIGTYW 156 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 157 GQVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLE 215 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R+ +++ IPD FM+ V A W L SP Sbjct: 216 IRKPSGDFNRKALNLHHGVLIPDAFMEAVRDGAEWHLKSPKT------------------ 257 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 +V + A AL++K++ TG P+I F D N P+ H V + Sbjct: 258 ---------GEVRATVDARALFQKLVETRLATGEPYIVFADHVNKNMPKHHRELGLKVST 308 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EITL + + L + ++ I +R LDNV ID Sbjct: 309 SNLCSEITLPTGLDHKGNDRTAVCCLSSLNLETWDEWKDDKQFIEDVMRFLDNVLQDYID 368 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +E+A S R++GLG+MGF S L +P+ A + I+ A Sbjct: 369 RHEPGMERAAYSAARERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRMFKHINAQVNQA 428 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ LA ERG D+ + R Sbjct: 429 SMTLAAERGPCP--------------DAADVGVMER------------------------ 450 Query: 758 MRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 S MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ Sbjct: 451 --FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLIEKSKN 508 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +A+ + + H GS+ +++ + + K T+FEID WL+E A R +IDQAQSLNL+ Sbjct: 509 SDAVWNSILEHGGSVQHLDFLSPEEKDTFKTSFEIDQRWLLELAGDRTPYIDQAQSLNLF 568 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + L ++ +AW +G+K+ YYLRS+S G + V N+ + Sbjct: 569 IPADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA---------GFAGSGGVEADNTIS 619 Query: 936 HSLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 620 APKFEIGETTDYDECLACQ 638 >gi|305663588|ref|YP_003859876.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ignisphaera aggregans DSM 17230] gi|304378157|gb|ADM27996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ignisphaera aggregans DSM 17230] Length = 877 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 203/880 (23%), Positives = 370/880 (42%), Gaps = 129/880 (14%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM---YDGLSE 195 I +K++ DG++ FN +++ + + +AC L D + + + E +S Sbjct: 13 RSIISTVKVIKRDGSIEPFNLEKVFISISKACKKLCDRNEILSIIEILVGEIKERSEIST 72 Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 ++ + + P + +V R+ L K+ ++V Sbjct: 73 LEISDRIERIMISKAISNPKWFEVVKRYELGKIYKDVYGKRSDV---------------- 116 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSR 313 +FD +D + ++IL RY + G Sbjct: 117 -------------------EFD----------PKDLKLTFSAIKILGSRYLIKDPETGRF 147 Query: 314 IEMPQAFFMRVAMGLALKETEKE---------------KRAVEFYNLLSSFHFMCSTPTL 358 IE PQ F RV+ +A +E + FY LLS F+ ++PTL Sbjct: 148 IETPQMLFRRVSRAIATQEYKYCIQQNNNEDLCKDRVKYWEELFYELLSDQRFLPNSPTL 207 Query: 359 FNSGTRHPQLSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 N+GT+ LS+CF+ V D + GI+ A++ A++ + GG G D++ +R G Sbjct: 208 MNAGTKLGILSACFVIPVRDSIVTPDGEGIYDAVRAQAIIFQQGGGTGFDFSELRPEGDI 267 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + T G + G + F+++ + + QGGKR+GA L WH D+E+F+D + D Sbjct: 268 VSTTGGIASGPLSFMRMFDVNTEVIKQGGKRRGANMGVLHVWHADIEKFIDAKSGQLKDV 327 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENY 525 + N + D F++ V L +P + + + YE++ Sbjct: 328 N-LQNFNISVGAYDYFIEAVMNGGSIPLINPRKTNLRRDLGNNSKFYAITRARHYLYEDW 386 Query: 526 ERQADRGEIK----------------------------VFRKISAVALWRKMLTMLFETG 557 ++ E++ + ++A L+ K++ +++G Sbjct: 387 VQEVIINELESKGGSIWLDETILLTIDEAMIIAQEEKAIVGYVNAKKLFEKIVRNAWDSG 446 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P + F D N R P ++G ++++N C E L CNLGSINL + +++ Sbjct: 447 DPGLLFIDTINRRHPVWYLGKINATNPCGEQPLLP----WESCNLGSINLEKYVEYDEYG 502 Query: 618 -----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + +LA IR VR +DN+ID+ + + +++ R IG+G+MG+ L L I Sbjct: 503 KPRIAWQRLAEDIRVIVRFMDNIIDVAKWPLPQLEEAVKRTRKIGIGVMGWHHMLIKLGI 562 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--- 729 PY S +A+ +A E+I ++A AS+ELA+ERGA+ ++ + + L Sbjct: 563 PYDSADALYLAYYLAEWIEYNAALASIELARERGAFPAYDPDKYRPTWLSAKPLEELLAI 622 Query: 730 ----AEVRDELAMNRTSR--LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 A+ + +SR + W+ ++ + G+RN+ +IAPT TI+ I S SI+ Sbjct: 623 ASIDAKPSKFILELLSSRPQIDWNTVEVLRRKYGIRNAALTSIAPTGTISIIANASPSIE 682 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + + + G F V+ + L++ +L +I ++ GSI +I +P +K Sbjct: 683 PIFAVAFERHVTVGKFIEVDPLFLEYLRKYELDSPELIEEIARR-GSISDIPYMPRTIKL 741 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902 + A +IDP W + + Q+W+ S + L E + + +Y AW++G K Sbjct: 742 LFKGALDIDPKWHVLHQAVWQQWVCAGVSKTVNLRFEATVDDVRNVYLLAWMLGCKGITV 801 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 R +S ++ GV VP P Sbjct: 802 YRDKSK--AQQVIYVGVKMSQQQVPKERTEKIQLEEKSPQ 839 Score = 47.9 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 18/98 (18%) Query: 26 IKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQ 85 I V+VIKR+G + F+ K+ +I KA + + ++ I ++ E V + + Sbjct: 16 ISTVKVIKRDGSIEPFNLEKVFISISKA---------CKKLCDRNEILSIIEILVGEIKE 66 Query: 86 HNKSALIVHIEDIQDQVECSLMQS-----GHHKITREY 118 ++ + +I D++E ++ ++ + Y Sbjct: 67 RSE----ISTLEISDRIERIMISKAISNPKWFEVVKRY 100 >gi|209523558|ref|ZP_03272112.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira maxima CS-328] gi|209495963|gb|EDZ96264.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira maxima CS-328] Length = 752 Score = 426 bits (1094), Expect = e-116, Method: Composition-based stats. Identities = 213/790 (26%), Positives = 363/790 (45%), Gaps = 84/790 (10%) Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 +D P +++++ DG+L + R+ +V AC GL + + + + +G++ Sbjct: 8 TDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGLDA-NPITLEAGLTTRLKNGVTTR 66 Query: 197 DLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +++ LI + L +P++ V R + L ++ L + + + Y + Sbjct: 67 EIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVSRGYQYED---------YCQT 117 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 ++ G L L + + + D ++Y G +L RY L E Sbjct: 118 VTSKVKSGQYDARLL-KYTPDQLREAGSWINPQWDKDYDYAGAVLLTKRYLL-----PEE 171 Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +PQ + A+ LA+ E ++ A +FY ++ +TP L N + LSSCF+ Sbjct: 172 LPQEALLSCALLLAVVEAPEKRMFWAQKFYQAIALRQISLATPILANLRIPNGSLSSCFI 231 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D+L IF +++ A ++K GG+G + + +R G+ + G S GVIP++K+ ND Sbjct: 232 IGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWIKLLND 291 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TA+AVNQGG+R GA+ L+ WH+D+ EFL+++ GD RR+ +D+ I D FM+RV Sbjct: 292 TAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISDEFMRRV 351 Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 WTL P EV +L +L+G+EFE AY+ E + E+K++++I+A L++ Sbjct: 352 RNCENWTLIDPYEVRVKLGIELSELWGEEFESAYQKIEA-SLDYELKLYKRINARELFKN 410 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 ++ ETG P++ FKD N +P QH G + NLC E N E L L Sbjct: 411 IMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----LAHTCNL 465 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + D+ L + AVR+LDN I+I + + N +R IG+G+MG L Sbjct: 466 NSLNLSNLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQRYRTIGVGVMGLADWLA 525 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 Y+ + + E I F+ S+EL++ERGAY +F GS W QG + Sbjct: 526 KRRFSYSHLQEI---SNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL------I 576 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 A+ D + + W EL + ++ G+RNS+ AIAP + + + G + S+ P Y Sbjct: 577 GAKPVDWFLTHADDKHRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASVLPCYSR 636 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + G + + + + W P++ T Sbjct: 637 FFYDKWAKGTVP-IAPPFIKD----NFW-------------------FYPEN-----KT- 666 Query: 849 FEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLM 895 +D ++++ + Q+WID S+ NL E K + AW Sbjct: 667 --LDQQIVVKAVAAMQQWIDTGISMELMFNLNQGVYFPEEPARSLKAKDIFDTLMAAWEQ 724 Query: 896 GLKTTYYLRS 905 G K YY+R+ Sbjct: 725 GCKAIYYVRT 734 >gi|149185042|ref|ZP_01863359.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter sp. SD-21] gi|148831153|gb|EDL49587.1| ribonucleotide-diphosphate reductase alpha subunit [Erythrobacter sp. SD-21] Length = 679 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 201/678 (29%), Positives = 300/678 (44%), Gaps = 94/678 (13%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G + L DRY L E Q F RVA A + + A Y+ Sbjct: 87 DESRDDLLTEFGKETLEDRYLL-----PGESYQDLFARVADAFA----DDQDHAQRLYDY 137 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT+ SC+L +V D L GI EN LA GG+G W Sbjct: 138 ISRLWFMPATPVLSNGGTQRGLPISCYLNSVSDSLDGIVNTWNENVWLASKGGGIGTYWG 197 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++ Sbjct: 198 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDVTHPEIEEFLEI 256 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V + L SP + Sbjct: 257 RKPSGDFNRKALNLHHGVLVTDAFMEAVRNGEEFDLLSPKD------------------- 297 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V + + A +L++K++ TG P+I F D N P+ H V +S Sbjct: 298 --------GSVRKTVDARSLFQKLVETRLATGEPYIVFSDTVNRMMPKHHRDLGLKVSTS 349 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC EITL + + L + +++ I +R LDNV ID Sbjct: 350 NLCAEITLPTGIDHLGNDRTAVCCLSSLNIEKWDEWNTDKQFIEDIMRFLDNVLQNYIDR 409 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++GLG+MGF S L I + SP A + + I A AS Sbjct: 410 APDEMARAKYSAMRERSVGLGVMGFHSFLQQKGIGFESPMAKVWNLKMFKHIQSKASEAS 469 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LAQERGA + + Sbjct: 470 MVLAQERGACPDAEDMGAME---------------------------------------- 489 Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ Sbjct: 490 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLDKKSKNS 549 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 A+ + + GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL++ Sbjct: 550 TAIWNSILEKGGSVQHLDFLTPEEKATFKTSFEIDQRWLLEFAADRAPYIDQAQSLNLFI 609 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ QAW G+K+ YYLRS+S +++ + Sbjct: 610 PADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA--------GFAGGVEADNTADAAKY 661 Query: 937 SLGIPSSCTSDTECEVCQ 954 L + T EC CQ Sbjct: 662 ELAAGAEQTDYEECLACQ 679 >gi|299822181|ref|ZP_07054067.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi DSM 20601] gi|299815710|gb|EFI82948.1| ribonucleoside-diphosphate reductase subunit alpha [Listeria grayi DSM 20601] Length = 758 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 245/795 (30%), Positives = 373/795 (46%), Gaps = 86/795 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ + + + + + + + + + DL L Sbjct: 4 YIVKDGGNRKLEFDHARLDRYLNKVHEEFPKLEIEDYKRKIFNFIEKKEDYAADDLVDYL 63 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + P + AR L KL ++ + + Y E Sbjct: 64 IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYIGLQESLGE 118 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ +L+ + E+D F Y GL +L RY + E+PQ Sbjct: 119 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 178 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ + E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 179 WLTIALYLMQNEGKEKRMELVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 238 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 239 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 298 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 299 DQLGQRKGAISVYLDVFHKDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDVFMEAVERRGE 358 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV D Y ++F E + + E + + A+ + ++++ Sbjct: 359 WYLFDPHEVHDKKGWYLQDFYDEKKGEGTFREKYDELVADETISKKIVKAIDIAKRIMLS 418 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G ++SSNLCTEI N S+ Sbjct: 419 QLETGNPFMFYRDEVNRMNPNKHEGRIYSSNLCTEIMQNMSATRVIHEIISGDQIVITKK 478 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL SINL D L+ I VR+LDNVID+N + +A +N + Sbjct: 479 AGDFVVCNLSSINLGRA--VLAEDESTLSRLIDVEVRMLDNVIDLNELPVPQATITNKKY 536 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 537 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEKINYLAIQASNKLAQEKGAYKVFKG 596 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + S W EL +V GMRN+ MA+AP + A Sbjct: 597 SDWETG--------------EYFERRDYSTEAWKELADKVAASGMRNAYLMAVAPNMSTA 642 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ Sbjct: 643 QIAGSTASIDPIYNAFYYEEKKDYRRPVIAP----------------------------- 673 Query: 834 IERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + + A+++D + +RRQ+ +DQ+ S NLY+ KL ++ Sbjct: 674 --DLSLNTYPYYEKGAYKVDQFASVRQNARRQRHVDQSLSFNLYVPSGIKASKLLELHMT 731 Query: 892 AWLMGLKTTYYLRSR 906 AW GLKTTYY+RS Sbjct: 732 AWREGLKTTYYVRSN 746 >gi|85710101|ref|ZP_01041166.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter sp. NAP1] gi|85688811|gb|EAQ28815.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter sp. NAP1] Length = 669 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 202/689 (29%), Positives = 304/689 (44%), Gaps = 96/689 (13%) Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE 334 + + RD G + L DRY L E Q F RVA A + Sbjct: 68 KVNDRRFDVQIDESRDANLTEFGKETLTDRYLL-----PGEKYQDLFARVADAYA----D 118 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 ++ A Y+ +S+ FM +TP L N GT SC+L +V D L GI G EN LA Sbjct: 119 DQEHAQRLYDYISNLWFMPATPVLSNGGTSRGLPISCYLNSVSDSLDGIVGTWNENVWLA 178 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 GG+G W VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ Sbjct: 179 SKGGGIGTYWGNVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDV 237 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H ++EEFL++RK +GD R+ +++ + D FM+ V A + L SP Sbjct: 238 SHPEIEEFLEIRKPSGDFNRKALNLHHGVLLTDEFMEAVRDGADFDLKSPKT-------- 289 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 +V ++A +L++K++ TG P+I F D N P+ Sbjct: 290 -------------------GEVRGTVNARSLFQKLVECRLATGEPYIVFNDTVNRMMPKH 330 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 H V +SNLC+EITL + + L + ++ I +R Sbjct: 331 HRDLGLKVSTSNLCSEITLPTGIDHLGNDRTAVCCLSSLNLEKWDEWSTDKQFIEDVMRF 390 Query: 632 LDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 LDNV ID + +A+ S R++GLG+MGF S L + + S A + + Sbjct: 391 LDNVLQDYIDRAPDEMARARYSAERERSVGLGVMGFHSFLQQKGLGFESAMAKALNLKMF 450 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 + I A AS+ LAQERG D+ + A R Sbjct: 451 KHIQAKASEASMLLAQERGPCP--------------DAAEMGAMER-------------- 482 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 S MAIAPTA+I+ ICG S I+P N+Y +SG F V N +L Sbjct: 483 ------------FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYL 530 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 L ++ + + + GS+ +++ + D+ K T+FEID WL+E A+ R + Sbjct: 531 EKLLDKKSKNSTNVWNSILERGGSVQHLDFLTDEEKASFKTSFEIDQRWLLEFAADRAPY 590 Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 IDQAQSLNL++ + L ++ QAW G+K+ YYLRS+S Sbjct: 591 IDQAQSLNLFIPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA----------GFAG 640 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 D + + + T EC CQ Sbjct: 641 GVEADNTADAAKFELAAEQTDYEECLSCQ 669 >gi|330994650|ref|ZP_08318573.1| Ribonucleoside-diphosphate reductase large subunit [Gluconacetobacter sp. SXCC-1] gi|329758291|gb|EGG74812.1| Ribonucleoside-diphosphate reductase large subunit [Gluconacetobacter sp. SXCC-1] Length = 599 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 204/680 (30%), Positives = 299/680 (43%), Gaps = 91/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G L +RY L E Q F RVA A Y+ Sbjct: 1 MDHSRDALLTAFGKATLDNRYLL-----PGESYQDLFGRVASYYGA----DAAHAQRLYD 51 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 52 YISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 111 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G ++ NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++ Sbjct: 112 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 170 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LR+ TG D R+ +++ +PD FM+ V + W L SP + Sbjct: 171 LRRPTGGDPNRKALNLHHGVLVPDAFMRAVADDDEWALLSPKDN---------------- 214 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V RK+SA ALW ++LT E G P+I F D N P+ H V Sbjct: 215 -----------TVIRKVSARALWIRILTARMEQGEPYIIFSDHVNNARPEHHKLAGLEVK 263 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC EITL + ++ L + ++ I + LDNV I Sbjct: 264 TSNLCAEITLPTGMDQHGRERTAVCCLSSLNLETWEEWKDNPQFIEDVMLFLDNVLQDFI 323 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D +E+A+ + R++GLG+MGF S L ++P+ S A + I A + Sbjct: 324 DRAPDDMERARYAAMRERSVGLGVMGFHSFLQANNVPFESVVAKGWNRRIFKHIRAQADA 383 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ERG D V Sbjct: 384 ASRKLAEERGPCP-------------------------------------DAADYGVME- 405 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L +R Sbjct: 406 --RFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLLTERGQ 463 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + S + + GS+ +++ + K + TAFE+D W+IE A+ R ++ QAQS+N+ Sbjct: 464 NTSEVWSSITLNKGSVQHLDFLTRQEKDVFKTAFELDQRWVIEHAADRAPYVCQAQSINI 523 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW G+K+ YY RS S + DG+ Sbjct: 524 FLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSIQRAD----AVSDGQEKRDLSHREGED 579 Query: 935 THSLGIPSSCTSDTECEVCQ 954 P++ T EC CQ Sbjct: 580 AAGTAGPATTTDYEECLACQ 599 >gi|83859673|ref|ZP_00953193.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis alexandrii HTCC2633] gi|83852032|gb|EAP89886.1| ribonucleoside-diphosphate reductase, alpha subunit [Oceanicaulis alexandrii HTCC2633] Length = 626 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 198/678 (29%), Positives = 303/678 (44%), Gaps = 99/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G + L DRY L E Q F RV+ A + + A Y+ Sbjct: 39 DPSRDALLTDFGKKTLVDRYLL-----PGESYQDMFARVSTAYA----DDLEHAQRLYDY 89 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S+ FM +TP L N G SCFL +V D L I EN LA GG+G W Sbjct: 90 MSNLWFMPATPVLSNGGADRGLPISCFLNSVDDSLGDIVSTWTENVWLASNGGGIGTYWG 149 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR +G + NG++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 150 NVRSIGEKVGQ-NGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEI 208 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R++ +++ + D FM+ V ++ + L SP Sbjct: 209 RKPSGDFNRKSLNLHHGLNVSDAFMEAVAKDEEFELISPRS------------------- 249 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 +V + ++A LW+K+L + +TG P+I F D N P V S Sbjct: 250 --------GEVVKTVNARKLWQKILEVRLQTGEPYILFSDTVNNNLPAHQRKLGLKVRQS 301 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + A ++ + R LDN+ I+ Sbjct: 302 NLCSEITLPTGVDHLGNDRTAVCCLSSLNAEKFLEWKDDERFLEDIFRFLDNILQDFIER 361 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 +E+AK S R++GLGLMGF S L +++P+ S A + I A AS Sbjct: 362 APDEMERAKYSAARERSVGLGLMGFHSFLQSMNVPFESAMAQSWNKRMFQHIRQGADKAS 421 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 V+LA+ERGA D+ + R Sbjct: 422 VKLAEERGACP--------------DAADNGVKAR------------------------- 442 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 S+ +AIAPTA+I+ ICG S I+P N+Y +SG FTV N +L L+++ Sbjct: 443 -FSHKLAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPYLEKILEEKGKNT 501 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 A+ S + H+GS+ +++ + + K + TAFE+D W+IE A+ R +I QAQSLNL+L Sbjct: 502 PAVWSSILEHEGSVQHLDCLDELEKDVFKTAFELDQRWVIEHAADRSPYICQAQSLNLFL 561 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + + L ++ AW G+K+ YY RS+S A Sbjct: 562 PGDVNKWDLHMLHWSAWEKGVKSLYYCRSKSVQRA-------------AYAGAGEKDEMS 608 Query: 937 SLGIPSSCTSDTECEVCQ 954 ++ EC CQ Sbjct: 609 KSLSDAAPKDYDECLACQ 626 >gi|260589756|ref|ZP_05855669.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia hansenii DSM 20583] gi|260539996|gb|EEX20565.1| ribonucleoside-diphosphate reductase, alpha subunit [Blautia hansenii DSM 20583] Length = 733 Score = 425 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 234/751 (31%), Positives = 368/751 (49%), Gaps = 94/751 (12%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + ++E D+ AL ++ L E EP + + ARFL K + + T + K+ ++ + ++Q Sbjct: 32 ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 L +EG+ + E+ + +++ + +K ER+ F Y GL +L +RY + Sbjct: 92 YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143 Query: 310 NGSR-IEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 + +E PQ +M +A+ LA+KE + + +FY++LS +TPTL N+ + Q Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ VPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI + Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +++ NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ A PD Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323 Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 LF K ++ W L P E+ L D YG+E+E Y E R I Sbjct: 324 LFWKMAKEDLEQKWHLMCPHEIFMVKGWRLEDCYGEEWEEKYRQCIED----ERIKKRSI 379 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596 + + R +L ETG P+ +D N +P H G+++ SNLCTEI N E Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439 Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 VCNL S++L D + + TAVR LDNVID Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSLGHLSVE---DKKYMKDIVGTAVRALDNVID 496 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N + + A+ +N +R IGLG+ G+ L +I + S E ++ ADE E I++ + A Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S +LA+E+G Y F+GS W G W EL+ +V+ G Sbjct: 557 SADLAEEKGTYQFFEGSDWHTG--------------AYFEKRNYVSKEWKELEYKVRNTG 602 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN +A APT++ + + G + +DP + +++ V Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDPVMKKFFMEEKKGSMLPRVAP------------- 649 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + D + A ID + +++ RQ+ IDQAQSLNLY+ Sbjct: 650 ------------------DLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSLNLYI 691 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + + ++L +Y +AW G+KT YY+RS+S Sbjct: 692 TNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722 >gi|220933052|ref|YP_002509960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halothermothrix orenii H 168] gi|219994362|gb|ACL70965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halothermothrix orenii H 168] Length = 766 Score = 425 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 183/656 (27%), Positives = 306/656 (46%), Gaps = 84/656 (12%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYN 344 D +++L RY +G IE P+ F RVA +A + E+ F+N Sbjct: 3 DIKLTRNAIKVLKARYLKRDASGELIETPEEMFKRVANNIASANEKYGEDPERDKEAFFN 62 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L++S F+ ++PTL N+ QLS+CF+ + D + GIF AL+ A++ K GG G + Sbjct: 63 LMASLDFLPNSPTLMNADNDLQQLSACFVLPIEDSMDGIFDALKYTALIQKSGGGTGFSF 122 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R + T G + G I F+++ + V QGGKR+GA L H D+ EF+ Sbjct: 123 SRLRPKSDIVKTTGGVASGPISFMEIFDAATNTVKQGGKRRGANMGILRVDHPDIMEFIT 182 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + D R ++ N + + D FM+ V ++ + L +P Sbjct: 183 AKA----DENRLNNFNISVAVTDEFMEAVKKDEEYDLVNPRS------------------ 220 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 +V ++ A ++ K++ M + G P I F D N +P H+G + S+N Sbjct: 221 ---------GQVVGQLRAREVFNKIVEMAHKNGEPGIIFIDEINRHNPTPHLGEIESTNP 271 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINC 640 C E L CNLGSINL N + D++KL +T+RTA R LDNVID+N Sbjct: 272 CGEQPLLPY----EACNLGSINLSHMVKNEGDKPEVDFEKLENTVRTATRFLDNVIDMNR 327 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + +E+ K+ +++R IGLG+MG+ L L IPY S AV +A++ M+FI+ + S + Sbjct: 328 YPLEQIKEMVYSNRKIGLGVMGWSDLLIRLGIPYNSDRAVNLAEKVMKFINEISHDESHK 387 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 +A++RG++ + +GS++D+ MRN Sbjct: 388 IARKRGSFPNIEGSIYDKS--------------------------------------MRN 409 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 + IAPT +I+ I G S I+P + Y + + V+ + ++R + E + Sbjct: 410 ATTTTIAPTGSISIIAGCSSGIEPLFAINYERHVLDDTLIEVHPYFEKIARERGFYSEEL 469 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879 ++ + GSI + IP+D++KI TA +I+P W I+ + QKW+D A S + E Sbjct: 470 MAKVAER-GSIQGMSEIPEDVQKIFVTAHDIEPEWHIKMQAAFQKWVDNAVSKTVNFRHE 528 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + + +Y A+ + K R S + +T + N T Sbjct: 529 ATKEDVARVYTLAYDLKCKGVTIYRDGSRSEQVLATGRSKTYGNNGFKKRPRPKIT 584 >gi|15921522|ref|NP_377191.1| ribonucleoside-diphosphate reductase large subunit [Sulfolobus tokodaii str. 7] gi|15622308|dbj|BAB66300.1| 831aa long hypothetical ribonucleoside-diphosphate reductase large subunit [Sulfolobus tokodaii str. 7] Length = 831 Score = 425 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 209/835 (25%), Positives = 365/835 (43%), Gaps = 114/835 (13%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 + KLK++ G + F S ++ + + D + N D Sbjct: 2 QKADITILSLSKLKVLKRSGKVEEFKSDKIFSKLGIIPEDVMDGILNDIAQNAKDNAIDT 61 Query: 193 LSESDLETALIFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + +D+ R LIE P + +++L ++ V Sbjct: 62 RTIADIVE------RNLIEHSLDHPELMDLAKKYVLARIYNHVFGK-------------- 101 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 + FD ERD Y L++L RY L Sbjct: 102 ---------------------GNWKGFD----------ERDLLLTYNALKVLEARYLLKD 130 Query: 310 NG--SRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFN 360 IE PQ F RVA LA E + ++ +FY ++S F+ +TPTL N Sbjct: 131 PNTLRYIETPQMMFRRVAKHLANVERQYGRSESEVKQLEEKFYKIMSELKFLPNTPTLMN 190 Query: 361 SGTRHPQLSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 SGTR LS+CF+ V D + GI+ AL+ A++ + GG G D++ +R G + Sbjct: 191 SGTRLGILSACFVIPVRDSMITPNGEGIYDALRAMAVVHQQGGGTGFDFSELRPKGDIVA 250 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T G + G + F+++ + + V QGGKR+GA + WH D+EEF+ + D + Sbjct: 251 STAGVASGPVSFMRIFDVSTDVVKQGGKRRGANMGVMHVWHPDIEEFIKSKTGQLKD-TQ 309 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-------- 527 + N + + D FM+ V + L +P + Y Y N E Sbjct: 310 LQNFNISVGVYDYFMQAVERGDVVPLINPRKTKIADWDYYMSKARGYMNEEWIQEVILSE 369 Query: 528 ----------------------QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 E + + ++A L+ +++ +++G P + F D Sbjct: 370 LEEKGGTVDLAESKIITIDEALVIAEKENAITQWVNARNLFDEIVKGAWDSGDPGLLFID 429 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 N R P ++G ++++N C E L CNLGSINL + + D+D LA TI Sbjct: 430 TINRRHPVWYLGKINATNPCGEEPLLP----WESCNLGSINLEKFVVDGKIDWDGLAETI 485 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R AVR+LDNVID N + +++ +++ R +GLG+MG L L IPY S +AV ++ + Sbjct: 486 RYAVRLLDNVIDANRYPLKQIEEATKKTRKVGLGVMGLARMLIKLGIPYDSVDAVYLSYQ 545 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWD---------QGVFPIDSIGLLAEVRDEL 736 +FI +HA S+E+A+E+G++ ++ L+ + I I + Sbjct: 546 LAKFIYYHAFKESIEIAKEKGSFPAYDAKLYKDIWESAKDFYEILEIMGIKDKPSDYVKK 605 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + +L +D+LK+ G+RN+ +++APT TI+ I G S SI+P + ++++ Sbjct: 606 LTSIVDKLDFDKLKEDRIKYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAV 665 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G F ++ ++ L++ +L + ++ + G IG+ +P ++K+ TA E+ P + Sbjct: 666 GKFMEIDPLFLDYLRKYELDNPEVVKKIAET-GMIGDNPFMPKSMRKVFRTAHEVSPEYH 724 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + + Q+W D S + L E + ++ +Y AW +G+K R +S + Sbjct: 725 LLHQAAWQQWNDSGTSKTINLRSEEPPETVERVYMLAWKLGIKGVTVYRDKSKSQ 779 Score = 47.5 bits (111), Expect = 0.011, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 24/103 (23%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + ++V+KR+G V F KI ++ I +++ + + + Sbjct: 10 SLSKLKVLKRSGKVEEFKSDKIF------------------SKLGIIPEDVMDGILNDIA 51 Query: 85 QHNKSALIVHIEDIQDQVECSLMQS-----GHHKITREYVLYR 122 Q+ K + I D VE +L++ + ++YVL R Sbjct: 52 QNAKDNA-IDTRTIADIVERNLIEHSLDHPELMDLAKKYVLAR 93 >gi|258542156|ref|YP_003187589.1| ribonucleotide-diphosphate reductase subunit alpha [Acetobacter pasteurianus IFO 3283-01] gi|256633234|dbj|BAH99209.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636293|dbj|BAI02262.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639346|dbj|BAI05308.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642402|dbj|BAI08357.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645457|dbj|BAI11405.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648510|dbj|BAI14451.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651563|dbj|BAI17497.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654554|dbj|BAI20481.1| ribonucleotide-diphosphate reductase alpha subunit [Acetobacter pasteurianus IFO 3283-12] Length = 643 Score = 425 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 203/682 (29%), Positives = 300/682 (43%), Gaps = 96/682 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L +RY L G Q F RVA A Y+ Sbjct: 46 VDRSRDALLTPFGKATLDNRYLLPDEGY-----QDLFGRVASYYGA----DAAHAQRIYD 96 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 97 YISKHWFMPATPVLSNGGTSRGLPISCFLNEASDSLKGIVDLWNENVWLASKGGGIGSYW 156 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G ++ NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++ Sbjct: 157 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 215 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LR+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 216 LRRPTGGDPNRKALNLHHGVLVSDAFMRAVESDDEWALISPKD----------------- 258 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V RKISA LW ++LT E G P+I + D N P+ H V Sbjct: 259 ----------GSVIRKISARGLWIRILTARMEQGEPYIVYSDHVNNARPEHHKLAGLEVK 308 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC+EITL + + L + + I + LDNV I Sbjct: 309 TSNLCSEITLPTGIDHHGKARTAVCCLSSLNLETWDQWKDNPQFIEDVMLFLDNVLQDFI 368 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK + R++GLG+MGF S L ++P+ S A + + I A + Sbjct: 369 DRAPEDMHRAKYAAMRERSVGLGVMGFHSFLQSRNVPFESVVAKVWNRKIFKHIREQADA 428 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ RG + Sbjct: 429 ASRKLAELRGPCPDAE------------------------------------------EY 446 Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+ SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L+++ Sbjct: 447 GIMERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQKLLEEK 506 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + S + GS+ +++ + K + TAFE+D W++E A+ RQ +I QAQS+ Sbjct: 507 GQDTPEVWSSITTSKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRQPFICQAQSV 566 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 NL+L + + L I+ AW GLK+ YY RS S + T+ V K + + V Sbjct: 567 NLFLPADVHKRDLHQIHYMAWKKGLKSLYYCRSLSIQRAD--TVSNVLAKNDVMNVDSSQ 624 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 +S+ S EC CQ Sbjct: 625 ASSGSASSG---NDYEECLACQ 643 >gi|331083186|ref|ZP_08332302.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 6_1_63FAA] gi|330404575|gb|EGG84115.1| ribonucleoside-diphosphate reductase subunit alpha [Lachnospiraceae bacterium 6_1_63FAA] Length = 733 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 234/751 (31%), Positives = 368/751 (49%), Gaps = 94/751 (12%) Query: 191 DGLSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + ++E D+ AL ++ L E EP + + ARFL K + + T + K+ ++ + ++Q Sbjct: 32 ENMTEEDILQALTKAAVELTQETEPKWEYIGARFLYMKFEKRLKTELAKRGIESFYEKIQ 91 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI 309 L +EG+ + E+ + +++ + +K ER+ F Y GL +L +RY + Sbjct: 92 YL--------TKEGLYGSYILENYSEEEILEAESYMKPERNNLFNYSGLDLLLNRYVIQT 143 Query: 310 NGSR-IEMPQAFFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 + +E PQ +M +A+ LA+KE + + +FY++LS +TPTL N+ + Q Sbjct: 144 HDHIKLETPQEMYMGIALHLAMKEMKDKMKWVKKFYDMLSKQEVTMATPTLSNARKPYHQ 203 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 LSSCF+ VPD L GI+ ++ A ++K+ GG+G + VR G+ I G G + GVI + Sbjct: 204 LSSCFIDVVPDSLEGIYRSIDNFAKVSKFGGGMGMYFGKVRATGSTIRGFEGAAGGVIRW 263 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +++ NDTAVAV+Q G R+GA YL+ WH D+ EFL LR N GDDR + HD+ A PD Sbjct: 264 IRLVNDTAVAVDQLGVRQGAAAVYLDVWHRDLPEFLQLRTNNGDDRMKAHDIFPAVCYPD 323 Query: 488 LFMKRVTQN--AGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 LF K ++ W L P E+ L D YG+E+E Y E R I Sbjct: 324 LFWKMAKEDLEQKWYLMCPHEIFMVKGWRLEDCYGEEWEEKYRQCIED----ERIKKRSI 379 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE---- 596 + + R +L ETG P+ +D N +P H G+++ SNLCTEI N E Sbjct: 380 TIKEIVRMVLKSAAETGTPFTFNRDTVNRANPNGHKGMIYCSNLCTEIAQNMQETESIST 439 Query: 597 -------------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 VCNL S++L D + + TAVR LDNVID Sbjct: 440 EIKTKDGETVVVTTTKPGDFVVCNLASLSLGHLSVE---DKKYMKDIVGTAVRALDNVID 496 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N + + A+ +N +R IGLG+ G+ L +I + S E ++ ADE E I++ + A Sbjct: 497 LNFYPVPYAQITNQKYRGIGLGVSGYHHLLAKKNILWESEEHLKFADELFEMINYFTVLA 556 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S +LA+E+G Y F+GS W G W EL+ +V+ G Sbjct: 557 SADLAEEKGTYQFFEGSDWHTG--------------AYFEKRNYVSKEWKELEYKVRNTG 602 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 MRN +A APT++ + + G + +DP + +++ V Sbjct: 603 MRNGYLLAAAPTSSTSILAGTTAGLDPVMKKFFMEEKKGSMLPRVAP------------- 649 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + D + A ID + +++ RQ+ IDQAQSLNLY+ Sbjct: 650 ------------------DLSLDTYYYYRNAHNIDQSFSVKACGVRQRHIDQAQSLNLYI 691 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 + + ++L +Y +AW G+KT YY+RS+S Sbjct: 692 TNNYTLRQLFHLYVEAWEAGVKTIYYVRSKS 722 >gi|167461831|ref|ZP_02326920.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383592|ref|ZP_08057350.1| ribonucleotide-diphosphate reductase subunit alpha-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152060|gb|EFX44996.1| ribonucleotide-diphosphate reductase subunit alpha-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 761 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 243/755 (32%), Positives = 354/755 (46%), Gaps = 92/755 (12%) Query: 191 DGLSESDLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQ---KATHH 246 D +E + +L ++ I K EP + A L++L Sbjct: 51 DQQAELAVYRSLKTAAVECITKDEPEWTFPAAAAYLQELYYIAAQNRSYSLTFRNGVIEG 110 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 + E E+G+ L +S ++ L ++ E+D F Y+GL L +RY Sbjct: 111 SPYGSFYELISMLCEKGIYKAELIDSYSREEIEDLGRAIQPEKDKLFPYVGLITLAERYL 170 Query: 307 LH-INGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 G E+PQ FM +AM L ++E + K E Y LS+ + +TPTL N+G Sbjct: 171 ATGFAGEFYELPQERFMIIAMQLMIQEKRSTRLKWVKEAYWALSNQYMTVATPTLSNAGK 230 Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 QLSSCF+ TV D L GI+ + + A L+K GG+G VR G+ I G GKS Sbjct: 231 ARAGQLSSCFIDTVDDSLQGIYDSNTDIARLSKMGGGIGVYMGKVRSRGSDIRGYKGKSS 290 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P+++ N+TAV+V+Q G RKG++ YL+ WH D+ FLDL+ N GD+R R HD+ Sbjct: 291 GVLPWIRQLNNTAVSVDQLGTRKGSIAVYLDVWHKDILSFLDLKLNNGDERLRAHDIFPG 350 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSD----------LHDLYGKEFEIAYENYERQADRG 532 IPDLFM+ V Q + LF P EV + F YE Sbjct: 351 VCIPDLFMEAVEQRGEFHLFDPHEVRQVMGYSLEDLYDEKVGEGSFRTKYEECVNNPQLS 410 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 + A+ + +++L ETG P++ ++D N +P +H G+++SSNLCTEI N Sbjct: 411 RT----TVQAIDIMKRILISQLETGTPYMFYRDTVNRANPNKHKGMIYSSNLCTEIMQNM 466 Query: 593 SSE-------------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 S+ + VCNL SI+L + L I +R+LD Sbjct: 467 SATTLIEEELNDGEIVIRKQAGDFVVCNLSSIHLARAVPDGV-----LERLIPVQIRMLD 521 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NVIDIN + +A +N +RAIGLG G L L I + S EAV + E ISF Sbjct: 522 NVIDINRIEVPQATYTNKRYRAIGLGTFGLHHLLALKKIQWESEEAVVYNEALYERISFL 581 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 AI AS+ELA+E+GAY F+GS W+ G + + W +L+++ Sbjct: 582 AIQASMELAREKGAYPLFEGSGWETG--------------EYFELKGYKSEEWKKLQQQT 627 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 K GMRN MA+AP + + I G + SIDP Y + + + + N +L + Sbjct: 628 KENGMRNGYLMAVAPNGSTSIIAGSTASIDPIYDLISYEEKT--TYKIANP--APDLSPQ 683 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 +W + TAF ID W I AS RQ+ IDQ QS Sbjct: 684 TIW---------------------------YYKTAFHIDQHWSIRQASARQRHIDQGQSF 716 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 NLY+ + K+ ++ AW GLK +YY+RSR+ Sbjct: 717 NLYVKPDIKAKQFLELHLDAWRSGLKASYYVRSRA 751 >gi|298674718|ref|YP_003726468.1| ribonucleoside-diphosphate reductase [Methanohalobium evestigatum Z-7303] gi|298287706|gb|ADI73672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanohalobium evestigatum Z-7303] Length = 695 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 197/792 (24%), Positives = 333/792 (42%), Gaps = 118/792 (14%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 I DG + F+S ++ + +A + + + + + D Sbjct: 3 YIKKRDGRTVDFDSDKITQAIHKAIHSVNENDGD-LARKMSYQVIDN------------- 48 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 LE + + +V ++ Y E YI K Sbjct: 49 -------------------LENRFKNTIPSVEDVQDIVEDVLIKNGYSEVAKSYILYRRK 89 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 + YL +K++ D +++L RY L NG+ +E P F RV Sbjct: 90 RSEV-----RETKKYLG--IKHD-DLKLSVNAIRVLERRYLLKGENGNPVETPSEMFERV 141 Query: 325 AMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 A ++ + EFY ++S+ F+ ++PTL N+GT QLS+CF+ V D + Sbjct: 142 ANSVSSIDKRYGYNPYDSKAEFYRMMSNLEFLPNSPTLMNAGTELGQLSACFVLPVEDSM 201 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 IF AL +++ K GG G ++ +R G + T G + G + F+ + + + Q Sbjct: 202 KDIFEALTNMSLIHKSGGGTGFSFSKLRPNGDIVKSTKGVASGPVSFMSIFDQATEVIKQ 261 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GGKR+GA L H D+ EF++ + + + N + + D FMK V ++ + Sbjct: 262 GGKRRGANMGILRIDHPDIIEFIN----SKEKEGYLDNFNISVGVTDEFMKAVQSDSKYD 317 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L +P K K+ A ++ + TM + TG P Sbjct: 318 LINPRT---------------------------GKTTEKLRARDIFDLITTMAWRTGDPG 350 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 + F D N R P HV + S+N C E+ L CNLGSINL N+ +++K Sbjct: 351 MIFLDEINRRHPVSHVRTIESTNPCGEVPLLPY----ESCNLGSINLSKMVKNDTINWEK 406 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L + + + LDNVID N + + + + +R IGLG+MG L+IPY S EA+ Sbjct: 407 LKNNTHSGIHFLDNVIDANKYPLNEIDRETKNNRKIGLGVMGLAEMFAKLNIPYNSEEAI 466 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 E A+ M+FI+ ++ SVEL ++RG++ +FKGS W++ Sbjct: 467 ETAENIMKFINEESVKKSVELGEKRGSFPNFKGSQWEK---------------------- 504 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 K MRN+ IAPT TI+ I S I+P + +V++ M+ Sbjct: 505 -------------KYSSMRNATVNTIAPTGTISIIANTSSGIEPIFALSFVRNVMATQLL 551 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 VN N K+R+ + + ++ D+ GSI N++++P D++ + T+ +IDP W + Sbjct: 552 EVNPVFENVAKERNFYSKDLMMDISKT-GSIQNLKQVPKDVRDLFVTSLDIDPEWHVRMQ 610 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK++D + S + L E + + IY A+ + K R S + Sbjct: 611 AAFQKYVDNSVSKTVNLPEKATLDDVKRIYMMAYKLNCKGITIYRYGSKENQVLELGGLK 670 Query: 920 DGKLNAVPVTDP 931 K + Sbjct: 671 KEKGEGIIADSE 682 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 25/164 (15%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 + KR+G FD KI++AI KA +V D+ + ++ Q + L K+ Sbjct: 4 IKKRDGRTVDFDSDKITQAIHKAIHSVNENDG-------DLARKMSYQVIDNLENRFKNT 56 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 I +ED+QD VE L+++G+ ++ + Y+LYR +RS+VR + + + Sbjct: 57 -IPSVEDVQDIVEDVLIKNGYSEVAKSYILYRRKRSEVRETKKYLG-----------IKH 104 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLS 194 D +S N+ R+ L+ + V ET M++ ++ Sbjct: 105 DDLKLSVNAIRVLER----RYLLKGENGNPV--ETPSEMFERVA 142 >gi|119944869|ref|YP_942549.1| ribonucleotide-diphosphate reductase subunit alpha [Psychromonas ingrahamii 37] gi|119863473|gb|ABM02950.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Psychromonas ingrahamii 37] Length = 757 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 192/788 (24%), Positives = 309/788 (39%), Gaps = 69/788 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + +G + ++ ++ A GL++VS V ++ YDG+ D+ +I Sbjct: 5 LFVTKRNGKRERIDLDKIHRVITWAAEGLKNVSVSQVELNSHIQFYDGIRTDDIHETIIK 64 Query: 205 SSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI E P+Y + A + LR++ E+ + +G Sbjct: 65 AAADLISETSPDYQYLAAHLAVFHLRKKAYRRFTPPSI-----------FEHVSKMCSKG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDMHLLEDYSKQEFEEMEKFIVHDRDLKFSYAAVKQLEGKYLIQNRVTGDIYESAQFLY 173 Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M VA L + FY+ +S F TP + T Q SSC L D Sbjct: 174 MMVAACLFSNYEPAIRLSYVRRFYDAVSQFKISLPTPIMAGVRTPTRQFSSCVLIETGDS 233 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G + +R LG+ I G G IPF K + + Sbjct: 234 LDSINATSSAIVKYVSQRAGIGINAGRIRALGSAIRGGEAFHTGCIPFYKHFQTAVKSCS 293 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG R GA + WH++VE L L+ N G D R ++ + LF +R+ Sbjct: 294 QGGVRGGAATVFYPVWHLEVESLLVLKNNRGIDSNRIRHLDYGVQLSRLFYQRLIDKKNV 353 Query: 500 TLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP +V L+D + EFE Y YE D + ISAV L+ ++ T Sbjct: 354 ALFSPSDVPGLYDAFFEDQDEFERLYNLYEGDPDIR----QKSISAVELFSLLMQERAST 409 Query: 557 GHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFA 612 G +I D CN SP + SNLC EI L + + + G I L Sbjct: 410 GRIYIQNVDHCNTHSPFDSKVAPIRQSNLCLEIALPTKPLQHIMDEEGEIALCTLSAFNL 469 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D+L AVR LD+++D + ++ A+ S+ R +G+G++ F L + Sbjct: 470 GAIESLDELEELAELAVRALDSLLDYQDYPVKAAENSSMARRTLGIGVINFAYYLAKNGV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS +LA ERGA F + + QG+ P+D+ + Sbjct: 530 KYSDGSANNLTHKTFEAIQYYLLKASNKLAFERGACPKFNETRYSQGILPLDTYKKSLDN 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + L W+ L+ + G+RNS A+ P+ T + I + I+P + VK Sbjct: 590 I----CDEQYHLDWETLRSDIVKHGLRNSTLSALMPSETSSQISNATNGIEPPRGFVSVK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++ G V + + ++ D+ + G Sbjct: 646 ASKDGILKQVVPEYEKYKQ-----NYELLWDIPNNQG----------------------- 677 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLRS 905 +E QK+IDQA S N D L A+ MG+KT YY + Sbjct: 678 ---YLELVGIMQKFIDQAISANTNYDPKRFSEGRVPMTNLLKDLLVAYKMGVKTLYYHNT 734 Query: 906 RSATSVEK 913 R E Sbjct: 735 RDGADDEN 742 >gi|114568950|ref|YP_755630.1| ribonucleotide-diphosphate reductase subunit alpha [Maricaulis maris MCS10] gi|114339412|gb|ABI64692.1| ribonucleoside-diphosphate reductase, alpha subunit [Maricaulis maris MCS10] Length = 637 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 197/679 (29%), Positives = 299/679 (44%), Gaps = 99/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G + L DRY L E Q F RVA A + + A Y+ Sbjct: 49 IDRSRDAFLTEFGKKTLEDRYLL-----PGESYQDMFARVATAYA----DDTEHAQRLYD 99 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL +V D L I G EN LA GG+G W Sbjct: 100 YISQLWFMPATPVLSNGGADRGLPISCFLNSVGDSLDDIVGTWTENVWLASNGGGIGTYW 159 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G I G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 160 GDVRSIGEKIGEI-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 218 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM+ V + + L SP Sbjct: 219 IRKPSGDFNRKSLNLHHGLNISDAFMEAVRDDEEFELKSPKS------------------ 260 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH---VGVVHS 581 +V + ++A LW+K++ + +TG P+I + D N P V Sbjct: 261 ---------GEVVKTVNARKLWQKIIELRLQTGEPYIIYSDTVNRALPAHQRKLGLKVRQ 311 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC EI L + ++ L + A ++ I R LDNV ID Sbjct: 312 SNLCAEIMLPTGFDQNGKERTAVCCLSSLNAAKYMEWKDNPDFIEDIYRFLDNVLQDFID 371 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +++A S R++GLGLMG + L ++ P+ S A + + I A +A Sbjct: 372 RAPAEMDRAVYSAIQERSVGLGLMGMHTLLQQMNAPFESAMAKSWNLKLFKHIRTAADAA 431 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SV+LA+ERGA + S + R Sbjct: 432 SVKLAEERGACPDAEAS--------------GVKAR------------------------ 453 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 S+ +AIAPTA+I+ ICG VS I+P N+Y +SG TV N L L+ + L Sbjct: 454 --FSHKLAIAPTASISIICGGVSAGIEPIPANVYTHKTLSGSTTVKNPQLEAVLEAKGLN 511 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 M + + +GS+ ++E + + K TAFEID W+IE A+ R ++ Q+QSLN++ Sbjct: 512 TPGMWASILEAEGSVQHLECLDEHEKATFRTAFEIDQRWVIEHAADRTPYVCQSQSLNIF 571 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW G+K+ YY RS+S A ++ S Sbjct: 572 LPGDVDKWDLHMLHWSAWEKGVKSLYYCRSKSIQRA-------------AYAGSEKKSDA 618 Query: 936 HSLGIPSSCTSDTECEVCQ 954 ++ T EC CQ Sbjct: 619 EVSMAEAAPTDYEECLACQ 637 >gi|21672461|ref|NP_660528.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091141|sp|Q8K9W3|RIR1_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|21623076|gb|AAM67739.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 763 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 183/790 (23%), Positives = 323/790 (40%), Gaps = 65/790 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 L + +G N ++ ++ A GL+++S V + Y+ +S ++ Sbjct: 2 KNSLFVTKRNGKKEKINLDKIHKVLNWAAKGLENISVSQVELRSRIQFYNNISTVNIHET 61 Query: 202 LIFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 +I ++ LI + P+Y + AR + LR++ + + + Sbjct: 62 IIKAAADLISENTPDYQYMAARLAIFHLRKKAYGQFEPPNL-----------YYHVKKMV 110 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQ 318 + G L ++ + V + + + + RD F Y ++ L +Y + G E Q Sbjct: 111 QLGKYDEKLLQNYSFEEYVEMNSFVDHRRDMNFSYAAVKQLEAKYLLQNRVTGQIYESAQ 170 Query: 319 AFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ ++ L ++ + FYN +S+F TP + T Q SSC L Sbjct: 171 FLYILISACLFSKYEKKVRMNYIQRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVLIEC 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D+L I G+G + +R LG+ I G IPF K Sbjct: 231 ADNLNSINATTSAIVKYVSQRAGIGINAGQIRALGSPIRNGEAFHTGCIPFYKHFQSAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA + WH+++E L L+ N G + R ++ A I L +R+ Sbjct: 291 SCSQGGVRGGAATVFYPIWHLEIESLLVLKNNRGIEENRVRHLDYAVQINKLMYQRMLLG 350 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 TLFSP +V L++ + + + E Y + I+ + I+A+ L+ ++ T Sbjct: 351 QKITLFSPSDVPKLYEFFFSDQKKFKEIYIKYEKNRNIRK-KSINAIDLFCLIMRERAST 409 Query: 557 GHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN- 614 G +I D CN S + + SNLC EITL + G I L A N Sbjct: 410 GRIYIQHVDHCNSHSAFNSKLATIRQSNLCLEITLPTKPLNNIDDKNGEIALCTLSALNL 469 Query: 615 --QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D L +VR LD +++ + + AKKS + R++G+G++ F L + Sbjct: 470 GLINDLHDLKELSTLSVRALDEILEYQNYPVVCAKKSAISRRSLGIGVINFAYYLAKNKV 529 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+ A + ++ E I ++ + AS ELA+E+G+ S F + + G FPID+ + Sbjct: 530 RYSDGSAKNLTHKTFEAIQYYLLKASCELAKEKGSCSLFNQTNYYLGKFPIDTYKKDIDS 589 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 N L W+ L+K++K G+RNS A+ P+ T + I + I+P + +K Sbjct: 590 I----CNEPLHLNWNLLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGFISIK 645 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 S+ G V LK + +EI Sbjct: 646 SSKDGMLRQVVPEYKK--------------------------------LKSEYELLWEIP 673 Query: 853 PM-WLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 +E + QK++DQ+ S N ++ K+L + A+ +G+KT YY Sbjct: 674 NNIGYLELVAIMQKFVDQSISANTNYDPKRFLNEKIPMKQLIYDLLVAYKLGIKTLYYQN 733 Query: 905 SRSATSVEKS 914 +R ++ Sbjct: 734 TRDGAEDNQN 743 >gi|329847262|ref|ZP_08262290.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis biprosthecum C19] gi|328842325|gb|EGF91894.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis biprosthecum C19] Length = 589 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 197/678 (29%), Positives = 293/678 (43%), Gaps = 101/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY + E Q F RVA A + + A Y+ Sbjct: 4 DPSRDALLTDFGKTTLDDRYLM-----PGESYQDMFARVATTYA----DDSEHAQRIYDY 54 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N G SCFL VPD L GI G EN LA GG+G W Sbjct: 55 ISRLWFMPATPVLSNGGASRGLPISCFLNAVPDSLEGIVGTWNENVALASNGGGIGTYWG 114 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ +H ++EEFL++ Sbjct: 115 RVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVFHPEIEEFLEI 173 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R++ +++ I D FM+ V + L SP Sbjct: 174 RKPSGDFNRKSLNLHHGIGITDEFMEAVRDGTPFGLRSPKNDE----------------- 216 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V R I A LW+K+L + +TG P++ F D N PQ V S Sbjct: 217 ----------VVRYIDARNLWQKILEIRLQTGEPYLIFNDTINRSMPQHQRELGLKVTQS 266 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLC+EI L++ + L + A ++ I +R LDNV++ Sbjct: 267 NLCSEIMLHTGPDHRGQDRTAVCCLSSVNAETFMEWRDAPGFIEDVMRFLDNVLEDFIQC 326 Query: 643 IEKAKKSN----HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + S R++GLGLMGF S L + + S A + + A AS Sbjct: 327 APGSMDSAVYSALCERSVGLGLMGFHSFLQAQGVAFESAMAKSWNMRLFKHLRREADKAS 386 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 ++L QERG AE R + Sbjct: 387 IKLGQERGPC-------------------RDAEERGVME--------------------- 406 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L L+ + + Sbjct: 407 RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLETKGINT 466 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + ++ H+GS+ +++ + +D K + TAFEID W++E A+ R I Q+QSLN++L Sbjct: 467 AEVWDNIVQHEGSVQHLDELSEDEKFVFKTAFEIDQRWVVELAADRTPEICQSQSLNIFL 526 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ AW GLK+ YYLRS+S + Sbjct: 527 PGDVDKWDLHMLHWTAWEQGLKSMYYLRSKSVQRA---------------SHAGSETKEI 571 Query: 937 SLGIPSSCTSDTECEVCQ 954 + + T EC CQ Sbjct: 572 VEKMSTPKTDYEECLACQ 589 >gi|148554423|ref|YP_001262005.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingomonas wittichii RW1] gi|148499613|gb|ABQ67867.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingomonas wittichii RW1] Length = 653 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 200/679 (29%), Positives = 305/679 (44%), Gaps = 98/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G + L DRY L E Q F+RVA A + + A Y+ Sbjct: 64 VDHSRDALLTDFGKETLTDRYLL-----PGESYQDLFVRVASAYA----DDQPHAQRLYD 114 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SC+L +V D L GI EN LA GG+G W Sbjct: 115 YISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYW 174 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 175 GSVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAAVYLDVSHPEIEEFLE 233 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R+ +++ + D FM+ V A W L SP + Sbjct: 234 IRKPSGDFNRKALNLHHGVLLTDAFMEAVRDGAEWDLVSPKD------------------ 275 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 + A AL++K++ TG P+I F D N P+ H V + Sbjct: 276 ---------GSKRSSVDARALFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDVGLKVST 326 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EITL + ++ + L + +++ + +R LDNV ID Sbjct: 327 SNLCSEITLPTGRDQHGMDRTAVCCLSSLNLETWDEWNGDKRFVEDVMRFLDNVLQDYID 386 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +AK S R++GLG+MGF S L +P+ A + I+ A A Sbjct: 387 RAPDEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHIAAAAAEA 446 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ LA ERG D+ L R Sbjct: 447 SMLLASERGPCP--------------DAADLGVMER------------------------ 468 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 S MAIAPTA+I+ ICG S I+P N+Y +SG F++ N +L L ++ Sbjct: 469 --FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIKNPYLQKLLAEKSKD 526 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +A+ + + GS+ +++ + D K ++ T+FEID WLIE A+ R +IDQAQSLNL+ Sbjct: 527 SDAVWNSILEKGGSVQHLDFLTQDEKDVYKTSFEIDQRWLIELAADRTPYIDQAQSLNLF 586 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + L ++ +AW +G+K+ YYLRS+S + +++ Sbjct: 587 IPADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA------------GFAGGVEADNTP 634 Query: 936 HSLGIPSSCTSDTECEVCQ 954 I EC CQ Sbjct: 635 DLKQIELETKDYDECLACQ 653 >gi|254293197|ref|YP_003059220.1| ribonucleotide-diphosphate reductase subunit alpha [Hirschia baltica ATCC 49814] gi|254041728|gb|ACT58523.1| ribonucleoside-diphosphate reductase, alpha subunit [Hirschia baltica ATCC 49814] Length = 621 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 198/679 (29%), Positives = 293/679 (43%), Gaps = 101/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G + L DRY L G Q F RVA A + + A Y+ Sbjct: 35 IDESRDELLTEFGKKTLTDRYILPGEGY-----QEMFARVAEAYA----DDAEHAQRIYD 85 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL V D L GI EN LA GG+G W Sbjct: 86 YMSRLWFMPATPVLSNGGAGRGLPISCFLNDVNDSLDGIVETWNENVWLASNGGGIGTYW 145 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G I GK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 146 GNVRSIGETIGN-AGKTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLE 204 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM+ V + + L SP Sbjct: 205 IRKPSGDFNRKSLNLHHGLNISDAFMEAVKNDEEFGLISPKT------------------ 246 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH---VGVVHS 581 + +KI+A LW+K+L + +TG P++ + D N P V Sbjct: 247 ---------GEEVKKINARKLWQKILEVRIQTGEPYLIYSDTVNNAMPAHQRQLGMKVKQ 297 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EI L++ + L + A ++ + + R LDNV ID Sbjct: 298 SNLCSEIMLHTGLDHLGNDRTAVCCLSSVNAEKFLEWKNDENFLEDIFRFLDNVLQDFID 357 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +A S R++GLGLMG S L +++P S A + + I + +A Sbjct: 358 RAPPEMARAAYSATRERSVGLGLMGMHSFLQSMNVPMESATAKSWNNMIFKHIRRGSDAA 417 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SV+LA+ERG + Sbjct: 418 SVKLAKERGPCPDAEECGVMA--------------------------------------- 438 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ MAIAPTA+I+ ICG S I+P N+Y +SG FTV N L L+ + Sbjct: 439 -RFSHKMAIAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNPHLEKVLEAKGKN 497 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + + + +GS+ ++ + + K TAFEID WLIE A+ R +I QAQSLNL+ Sbjct: 498 TDGIWAIILEAEGSVQGLDFLDEHEKATFRTAFEIDQRWLIELAADRTPYICQAQSLNLF 557 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW GLK+ YY RS+S + + Sbjct: 558 LPADIDKWDLHMLHWSAWEKGLKSLYYCRSKSVQRA-------------SFAGAEDKVKV 604 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + P T EC CQ Sbjct: 605 EGMDTPD--TDYDECLACQ 621 >gi|209966732|ref|YP_002299647.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum centenum SW] gi|209960198|gb|ACJ00835.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodospirillum centenum SW] Length = 621 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 203/680 (29%), Positives = 289/680 (42%), Gaps = 102/680 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G L DRY L E Q F RVA A + A Y+ Sbjct: 34 VDHSRDNLLTAFGKATLDDRYLL-----PGESYQDLFARVASYYA----DDTAHAQRLYD 84 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI G EN LA GG+G+ W Sbjct: 85 YISRLWFMPATPVLSNGGTDRGLPISCFLNEASDSLEGIVGLWNENVWLAAKGGGIGSYW 144 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++ Sbjct: 145 GNLRSIGERVKG-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAACYLPVWHPEIEEFVE 203 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ IPD FM+ V + W L SP + Sbjct: 204 MRRPTGGDPNRKALNLHHGVVIPDAFMRAVEADEDWKLVSPKD----------------- 246 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 R +SA LW ++LT ETG P++ F D N P+ H V Sbjct: 247 ----------GATLRVVSARQLWIRILTARVETGEPYLLFIDHVNRAIPEHHKLAGLTVK 296 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC EITL + + L + ++ + I +R LDNV+ Sbjct: 297 MSNLCAEITLPTGLDPWGQQRTAVCCLSSLNLETFLEWQDHPTFIEDTLRFLDNVLTDFI 356 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + R++GLG+MGF S L +P A I A + Sbjct: 357 AKAPDEMARAKYAAMRERSVGLGVMGFHSFLQGQGVPIEGVMAKVWNKRIFAHIKRQADA 416 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+ L ERG D+ + R Sbjct: 417 ASLALGAERGPCP--------------DAAEYGGKER----------------------- 439 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN +AIAPTA+I+ ICG S I+P N Y +SG ++V N +L L++ Sbjct: 440 ---FSNKIAIAPTASISIICGGASPGIEPIAANAYTHKTLSGSWSVRNKYLEAVLERHGR 496 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 DE S + + GS+ +++ + D K + TAFEID WLIE A+ R +I Q+QSLN+ Sbjct: 497 NDEDTWSAITLNGGSVQHLDFLSQDEKDLFRTAFEIDQRWLIEHAADRTPFICQSQSLNV 556 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + + L I+ QAW G+K+ YYLRS S E ++ Sbjct: 557 FLPADVHKRDLHQIHFQAWKKGVKSLYYLRSLSVQRAE---------------SESRPAA 601 Query: 935 THSLGIPSSCTSDTECEVCQ 954 P EC CQ Sbjct: 602 AAKPDTPPEPAKYEECLACQ 621 >gi|257468677|ref|ZP_05632771.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium ulcerans ATCC 49185] gi|317062932|ref|ZP_07927417.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium ulcerans ATCC 49185] gi|313688608|gb|EFS25443.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium ulcerans ATCC 49185] Length = 748 Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats. Identities = 232/835 (27%), Positives = 380/835 (45%), Gaps = 120/835 (14%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ G + + ++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 4 VINRAGIRENLDITKIREKLVRACEGL-EVNMVELESYIDSIYQENITTKKIQESLINQA 62 Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + +E ++ V R L+ + REV + + E+G+ Sbjct: 63 VAMTSFEESDWTYVAGRLLMMETEREVFHKRGFSYGD---------FYKTIKTLTEKGIY 113 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 L + ++ L + RD ++Y G + +RY L G+ E+PQ FM +A Sbjct: 114 DSRL-QEYTKDEIKELEKVIDISRDMMYDYAGANMFVNRYLLKFKGNIYELPQEVFMCIA 172 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LA+ E ++ A FYN LS +TP L N LSSCF+T + D++ IF Sbjct: 173 MLLAINEEDRVAVAKRFYNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFY 232 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + A ++K GG+G + + +R + ++G S GV+P++K+ NDTAVAVNQ G+R Sbjct: 233 NIDTIAKISKSGGGVGLNISRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRA 292 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAV A L++WH+D+E FL+L+ GD R + +D+ + DLFMKRV +N WTL P Sbjct: 293 GAVTAALDSWHLDIELFLELQTENGDQRGKAYDIYPQVVLSDLFMKRVEENLEWTLIDPY 352 Query: 506 EVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 EV + +LYG++FE YE E+ +++ + I A L+++++ + ETG P+ Sbjct: 353 EVRKKYGVELCELYGEKFEEIYEKLEKDTS---LELKKVIKARELFKEIMKVQIETGMPY 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCN 601 I FKD N+ + H G++ + NLC E N S E CN Sbjct: 410 IFFKDRANLMNHNSHKGMIGNGNLCMESFSNFSPSKNFAEETVEEKGVRTVNLGEVHTCN 469 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L S+NL ++L + + TAVR+LDN ID+ I+++ K N ++R IG+G M Sbjct: 470 LVSLNLAEILK------EELENIVDTAVRILDNTIDLTKTPIKESDKHNVSYRTIGVGTM 523 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L + Y E++ DE E I+ ++I +S LA++RG Y +FKGSLWD+G+F Sbjct: 524 GLADYLAREFMIYD--ESMNDIDELFEEIALYSIKSSALLAKDRGEYPAFKGSLWDKGLF 581 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + W E+ + VK GMRN AIAP + + + G + S Sbjct: 582 FQKDREWYMKNSKYADK-------WGEVFELVKKYGMRNGELTAIAPNTSTSLLMGATAS 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 ++P++ Y++ N G V + LK R + + Sbjct: 635 VNPTFSRFYIEKNQKGAVPRVVKY----LKDRAWFYPEFKN------------------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLK 898 ++P ++ SR KW Q S+ L D K + + AW G K Sbjct: 672 ---------VNPQTYVKIMSRIGKWTTQGVSMELIFDLNKNIKAKDIYDTFMTAWKNGCK 722 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R+ ++K+T + ECE C Sbjct: 723 SVYYIRT-----IQKNT--------------------------NIMNEKEECESC 746 >gi|284051980|ref|ZP_06382190.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrospira platensis str. Paraca] gi|291570481|dbj|BAI92753.1| ribonucleoside-diphosphate reductase alpha chain [Arthrospira platensis NIES-39] Length = 752 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 212/790 (26%), Positives = 362/790 (45%), Gaps = 84/790 (10%) Query: 137 SDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSES 196 +D P +++++ DG+L + R+ +V AC GL + + + + +G++ Sbjct: 8 TDTPFNRQIQVIRRDGSLTLLDVSRIRAVVNWACEGLDA-NPITLEAGLTTRLKNGVTTR 66 Query: 197 DLETALIFSSRTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 +++ LI + L +P++ V R + L ++ L + + + Y + Sbjct: 67 EIQDNLIGCALELCSPSDPDWRYVAGRLHIWNLWKDTLVSRGYQYED---------YCQT 117 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 ++ G L L + + D ++Y G +L RY L E Sbjct: 118 VTTKVKAGQYDDRLL-KYTPEQLREAGTWINPQWDKDYDYAGAILLTKRYLL-----PQE 171 Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 +PQ + A+ LA+ E ++ A +FY ++ +TP L N + LSSCF+ Sbjct: 172 LPQEALLSCALLLAVVEAPEKRMFWAHKFYQAIALRQISLATPILANLRIPNGSLSSCFI 231 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D+L IF +++ A ++K GG+G + + +R G+ + G S GVIP++K+ ND Sbjct: 232 IGMDDNLENIFDTIKDAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWIKLLND 291 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 TA+AVNQGG+R GA+ L+ WH+D+ EFL+++ GD RR+ +D+ I D FM+RV Sbjct: 292 TAIAVNQGGRRAGAITVSLDVWHLDILEFLEMQTENGDQRRKAYDIFPQLVISDEFMRRV 351 Query: 494 TQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 WTL P EV +L +L+G+EFE++Y+ E + ++K++++I+A L++ Sbjct: 352 RNCENWTLVDPYEVRVKLGIELSELWGEEFELSYQKIE-SSLDSKLKLYKRINARELFKN 410 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 ++ ETG P++ FKD N +P QH G + NLC E N E L L Sbjct: 411 IMRSQVETGMPYLWFKDTSNAANPNQHEGYIPGGNLCQESWSNVKPGE-----LAHTCNL 465 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D+ L + AVR+LDN I+I + + N +R IG+G+MG L Sbjct: 466 NSLNLANLDWQDLPNICEIAVRILDNTIEITHPPFQASIDHNQCYRTIGVGVMGLADWLA 525 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 Y + + E I F+ S+EL++ERGAY +F GS W QG + Sbjct: 526 KRRFSYNHVQEI---SNLFEDIGFYCTKTSMELSKERGAYPAFAGSSWSQGKL------I 576 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 A+ D + ++ W EL + ++ G+RNS+ AIAP + + + G + S+ P Y Sbjct: 577 GAKPVDWFLTHADDKIRWKELSEDIQKYGIRNSHITAIAPNTSSSLVQGCTASVLPCYSR 636 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + G + F + + W P++ T Sbjct: 637 FFYDKWAKGTVPIAPPF-----IKENFW-------------------FYPEN-----KT- 666 Query: 849 FEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEPS-----GKKLDFIYRQAWLM 895 +D ++++ + Q+WID S+ NL E K + AW Sbjct: 667 --LDQQIVVKAVATMQQWIDTGISMELMFNLNQGVYFPEEPDRSLKAKDIFETLMAAWEQ 724 Query: 896 GLKTTYYLRS 905 G K YY+R+ Sbjct: 725 GCKAIYYVRT 734 >gi|302390649|ref|YP_003826470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosediminibacter oceani DSM 16646] gi|302201277|gb|ADL08847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosediminibacter oceani DSM 16646] Length = 772 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 187/671 (27%), Positives = 302/671 (45%), Gaps = 83/671 (12%) Query: 286 KYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE----KEKRAV 340 + +L RY G +E P+ RVA +A E E A Sbjct: 1 MKNKKLRLTENARVVLQKRYLAKDEKGQVVETPEDMIERVARAVAAAEENYGQDPEFWAE 60 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 +FY++++ FM ++PTL N+G QLS+CF+ V D + GIFGA++ A++ K GG Sbjct: 61 KFYDMMAELKFMPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFGAIKNAALIHKSGGGT 120 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R GA + T G++ G + F+KV N AV QGG+R+GA L H D+ Sbjct: 121 GMSFSRLRPKGATVRSTGGEASGPVSFMKVFNAATEAVKQGGRRRGANMGILRVDHPDIL 180 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF+ + +D + N + I D FM+ + + + L P+ Sbjct: 181 EFIRCK----EDNNELTNFNISVAITDKFMETLKNDGTYELVDPNT-------------- 222 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 KV ++ A ++ ++ M ++ G P I F D N ++P H+G + Sbjct: 223 -------------GKVTGRLKAREVFDLIVDMAWKNGEPGILFIDRVNAKNPTPHIGQIE 269 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVI 636 S+N C E L CNLGSINL N+ DY++L + AVR LD+VI Sbjct: 270 STNPCGEQPLLPF----ESCNLGSINLSKFVKEGSTGNEIDYEELKQVVHMAVRFLDDVI 325 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N + + + ++ +R IGLG+MGF L L IPY S EAV++A+E M FI A Sbjct: 326 DVNKYPLPEIEQMTKANRKIGLGVMGFADMLIKLGIPYDSEEAVKLAEEVMGFIQREARK 385 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ RGA+ +F GS++D P+ Sbjct: 386 ASEDLAKTRGAFPNFPGSVYDVPGGPL--------------------------------- 412 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDL 815 +RN+ IAPT TI+ I G S I+P + + ++ + + E+++R L Sbjct: 413 -LRNATVTTIAPTGTISIIAGCSSGIEPVFALAFERNVLDKQRLIEIYPLFEEEMRRRGL 471 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + ++ ++ GS+ I IP+++K++ TA +I P W + + QK+ D A S + Sbjct: 472 YSPELMEEVLE-KGSLKGIAGIPEEVKRVFVTAHDISPEWHVRIQAAFQKYTDNAVSKTV 530 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE--KSTLKGVDGKLNAVPVTDPN 932 + + + +Y A+ +G K R S K T +G + + Sbjct: 531 NFPHSATREDVKKVYLLAYELGCKGVTVYRDGSREEQVLKKGTRQGQEAGAGTCGCEELP 590 Query: 933 SSTHSLGIPSS 943 PS Sbjct: 591 KEIKPRPRPSV 601 >gi|296536500|ref|ZP_06898591.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC 49957] gi|296263179|gb|EFH09713.1| ribonucleoside-diphosphate reductase [Roseomonas cervicalis ATCC 49957] Length = 633 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 203/692 (29%), Positives = 300/692 (43%), Gaps = 101/692 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY + E Q F RVA + + A Y+ Sbjct: 21 VDRSRDALLTDFGKATLDDRYLM-----PGESYQDLFARVASAYS----DDSAHAQRIYD 71 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 72 YISRLWFMPATPVLSNGGTTRGLPISCFLNEANDSLNGIVDLWNENVWLASKGGGIGSYW 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + NGK+ G+IPF++V + +A++QG R+G+ YL H ++EEF+D Sbjct: 132 GNLRSIGEKVGQ-NGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLPVSHPEIEEFID 190 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LR+ TG D R+ +++ +PD FM+ V + W L SP + Sbjct: 191 LRRPTGGDPNRKALNLHHGILVPDAFMRAVEADEEWALTSPKD----------------- 233 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V RK+SA LW ++L E G P+I + D N P+ V Sbjct: 234 ----------GAVVRKVSARGLWIRILMARIEQGEPYIIYSDAVNNARPEHQKLAGLEVK 283 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC+EITL + ++ L + F++ A I +R LDNV I Sbjct: 284 TSNLCSEITLPTGRDQHGKERTAVCCLSSLNLETWFEWKDDARFIPDVMRFLDNVLQGFI 343 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D ++ +AK S R++GLG+MGF S L ++P+ S A + I A Sbjct: 344 DDAPDSMARAKYSAMRERSVGLGVMGFHSFLQAQNVPFESVIAKVWNKRMFKHIREQADL 403 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA+ERG Sbjct: 404 ASRLLAEERGPCP------------------------------------------DAAEY 421 Query: 757 GMR--NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G SN MAIAPTA+I+ ICG S I+P N+Y +SG F V N +L L + Sbjct: 422 GFMERFSNKMAIAPTASISIICGGASPGIEPIAANVYNHKTLSGSFIVRNPYLKKVLAKH 481 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 D+ + + + GS+ +++ + + K + TAFE+D W++E A+ R +I Q+QS+ Sbjct: 482 GRDDDETWTTITVNKGSVSHLDFLDEQEKAVFKTAFELDQRWVVEHAADRTPYICQSQSV 541 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV----EKSTLKGVDGKLNAVPV 928 NL+L + + L I+ QAW G+K+ YY RS S EK ++ G A + Sbjct: 542 NLFLPADVHKRDLHQIHFQAWKKGVKSLYYCRSLSIQRADAISEKVAVQPELGFAAATSI 601 Query: 929 TDPNSSTHSLGIPSSC------TSDTECEVCQ 954 + + + T EC CQ Sbjct: 602 DAVLPVPPAPRVRAVAGEGGNGTDYEECLACQ 633 >gi|330834375|ref|YP_004409103.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera cuprina Ar-4] gi|329566514|gb|AEB94619.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Metallosphaera cuprina Ar-4] Length = 820 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 196/877 (22%), Positives = 374/877 (42%), Gaps = 115/877 (13%) Query: 134 HSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGL 193 S ++ K+ ++ DG F +++ + + D + ++ + +N D + Sbjct: 2 QSDTNVLSLSKISVIKRDGKKEEFKLEKILSKLGP----MHDEIVEGIVKDVLQNSTDNV 57 Query: 194 SESDLETALIFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 + + ++ R LIE + + R++L ++ V K Sbjct: 58 INTRVIADIVE--RNLIEGSLEHQELMDLAKRYVLSRIYNHVFGKGKWKGID-------- 107 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 ++D Y L++L RY L Sbjct: 108 -------------------------------------DKDLLISYNALKVLEARYLLKNP 130 Query: 311 G--SRIEMPQAFFMRVAMGLAL-KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 +E PQ F RVA LA + ++++ +FY+++S+ F+ +TP L NSGTR Sbjct: 131 ETLRYVETPQMMFRRVASYLAGVEREKRKEIEEKFYDIMSTLRFVPNTPALMNSGTRLGI 190 Query: 368 LSSCFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 LS+CF+ V D + GI+ L+ A++ + GG G D++ +R G + T G + Sbjct: 191 LSACFVLPVKDSMTTQNGDGIYDTLRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVAS 250 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 G + F+K+ + + V QGGKR+GA + WH D+E+F+ + D + + N + Sbjct: 251 GPVSFMKIFDVSTDVVKQGGKRRGANMGVMHVWHADIEDFIRSKTGDLKDV-QLQNFNIS 309 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------- 531 + D FM+ V + L +P + + A + Sbjct: 310 VGVYDYFMEAVMKEEQVPLITPRKTKIKGTDHEYYIVKARNYMREDWVQEEILRELEERG 369 Query: 532 --------------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 E + R ++A L+++++ +++G P + F D N R Sbjct: 370 PVYLDESKIITVDEALAIAESEGAIIRWVNARNLFQQIVKGAWDSGDPGLLFIDEINRRH 429 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRT 627 P ++G + ++N C E L S CNLGS+NL D++ L + I+ Sbjct: 430 PVWYLGKIQATNPCGEEPLLS----WESCNLGSLNLELFVKEKNGKPYIDWEDLTNVIKY 485 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AVR LDNV+D N + + + +++ R +GLG+MG AL L IPY S +A+ ++ Sbjct: 486 AVRFLDNVVDANRYPLPQIEQATKMTRKVGLGVMGLARALIKLGIPYDSVDAIYVSYNLA 545 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQ---------GVFPIDSIGLLAEVRDELAM 738 +FI + A+ AS+ELA+E+G++ ++ + + I + + M Sbjct: 546 KFIYYQAMKASIELAKEKGSFPAYDPVRYKDIWESAKEFEDILAISEVKGEPSDYAKAIM 605 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 +++ ELK G+RN+ +++APT TI+ I G S SI+P + ++++ G Sbjct: 606 AEAAKIDISELKDLRMRYGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGK 665 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F ++ + L++ +L +I + G +G+ +P ++++ TA E++PM+ + Sbjct: 666 FMEIDPLFLEYLRKYELDTPEVIKKIAES-GEVGDNPFVPKTIRRLFRTAHEVEPMYHVL 724 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 + Q+W D S + L E + + + +Y AW +G+K R +S + + Sbjct: 725 HQAAWQQWNDSGTSKTINLRSEETEETVGKVYLTAWRLGIKGITVYRDKSKSQ--QVIYF 782 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 G+ + + + S C+ C+ Sbjct: 783 GLKKEREEKSKQTTSLRLEKKFVEVSENFSGGCKTCE 819 Score = 50.2 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 24/103 (23%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + + VIKR+G F KI ++ G +I++ + + + Sbjct: 9 SLSKISVIKRDGKKEEFKLEKI--------LSKLGPMH------DEIVEGIVKDVLQNST 54 Query: 85 QHNKSALIVHIEDIQDQVECSLMQ-----SGHHKITREYVLYR 122 + + + I D VE +L++ + + YVL R Sbjct: 55 DNVINTRV-----IADIVERNLIEGSLEHQELMDLAKRYVLSR 92 >gi|253582917|ref|ZP_04860135.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium varium ATCC 27725] gi|251835123|gb|EES63666.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium varium ATCC 27725] Length = 748 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 233/835 (27%), Positives = 376/835 (45%), Gaps = 120/835 (14%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ G + + ++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 4 VINRAGIKENLDIIKIREKLIRACEGL-EVNMVELESYIDSIYQENITTKKIQESLINQA 62 Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + +E ++ V R L+ + REV + + + E G+ Sbjct: 63 VAMTSFEESDWTYVAGRLLMMETEREVFHKRGFSYGE---------FYKTIKTLTENGIY 113 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 L + + ++ L + RD ++Y G + +RY L G+ E+PQ FM +A Sbjct: 114 DNRL-QEYTEDEIKELEKAIDISRDMMYDYAGANMFVNRYLLKYKGNIYELPQEVFMCIA 172 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LA+ E + A FYN LS +TP L N LSSCF+T + D++ IF Sbjct: 173 MLLAINEENRVLVAKRFYNALSLKKISLATPILANLRIPKGNLSSCFITAMDDNIESIFY 232 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + A ++K GG+G + + +R + ++G S GV+P++K+ NDTAVAVNQ G+R Sbjct: 233 NIDTIAKISKSGGGVGLNVSRIRAKDSMVNGYYNASGGVVPWIKIVNDTAVAVNQQGRRA 292 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAV L++WH+D+E FL+L+ GD R + +D+ + DLFMKRV N WTL P Sbjct: 293 GAVTVALDSWHLDIELFLELQTENGDQRGKAYDIYPQVVLSDLFMKRVENNLEWTLVDPY 352 Query: 506 EVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 EV +L +LYG++FE Y+ E+ +K+ + I A L+++++ + ETG P+ Sbjct: 353 EVRIKYGVELCELYGEKFEEIYKALEKDTS---LKLKKVIKARELFKEIMKVQIETGMPY 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCN 601 I FKD N+ + H G++ + NLC E N E CN Sbjct: 410 IFFKDRANLMNHNNHKGMIGNGNLCMESFSNFFPSKDFTEKVVEEKGVRSAKLGEVHTCN 469 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L S+NL ++L + + TAVR+LDN ID+ I ++ K N +R IG+G M Sbjct: 470 LVSLNLAEIAR------EELENIVDTAVRMLDNTIDLTKTPIMESDKHNIAYRTIGVGTM 523 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G L + Y E++ DE E I+ ++I +S LA+ RG Y FKGS+WD+GVF Sbjct: 524 GLADYLAREFMIYD--ESLNDIDELFEEIALYSIKSSALLAKNRGQYPMFKGSMWDRGVF 581 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + +D N W+E+ + V GMRN AIAP + + + G + S Sbjct: 582 F-------QKNKDWYIKNSKYATKWNEVFELVAKYGMRNGELTAIAPNTSTSLLMGATAS 634 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL 841 ++P++ Y++ N G V + LK R + + Sbjct: 635 VNPTFSRFYIEKNQKGAVPRVVKY----LKDRAWFYPEFKN------------------- 671 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLK 898 ++P +E SR KW Q S+ L D K + AW G K Sbjct: 672 ---------VNPQIYVEIMSRIGKWTTQGVSMELIFDLNKNIRAKDIYNTLMSAWKNGCK 722 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R+ ++K+T + ECE C Sbjct: 723 SIYYIRT-----IQKNT--------------------------NIMNEKEECESC 746 >gi|21233408|ref|NP_639325.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770373|ref|YP_245135.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. campestris str. 8004] gi|21115248|gb|AAM43207.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575705|gb|AAY51115.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris str. 8004] Length = 827 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 242/824 (29%), Positives = 375/824 (45%), Gaps = 99/824 (12%) Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + H+++ I + G I F RLE +++ + + + Sbjct: 45 RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPARLERAIDQIHAEFPQLDVGDYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +S +L+ + ERD F Y GL + Sbjct: 157 RFYDAGQKYGSFVGLQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTP 356 L RY N E+PQ ++ +A+ L E +E+R E Y LS+ + +TP Sbjct: 217 LATRYLATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATP 276 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G Sbjct: 277 TLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRG 336 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R Sbjct: 337 VSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRA 396 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQ 528 HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + + Sbjct: 397 HDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEE 456 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI Sbjct: 457 VVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEI 516 Query: 589 TLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK-----LAST 624 N S + VCNL SINL D L Sbjct: 517 LQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERL 576 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + +D Sbjct: 577 IPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSD 636 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E E I++ + AS+ELA+E+G YS F+GS W G + + Sbjct: 637 ELYERINYLTVQASMELAKEKGTYSVFRGSDWHTG--------------EYFRARDYNSP 682 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + V Sbjct: 683 QWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP 742 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + D + A+++D + +RR Sbjct: 743 -------------------------------GLSLDTWPYYEKGAYKVDQFASVRQNARR 771 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q+ IDQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 815 >gi|188993573|ref|YP_001905583.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. campestris str. B100] gi|167735333|emb|CAP53547.1| Ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. campestris] Length = 827 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 242/824 (29%), Positives = 375/824 (45%), Gaps = 99/824 (12%) Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + H+++ I + G I F RLE +++ + + + Sbjct: 45 RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPARLERAIDQIHAEFPQLDVGDYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +S +L+ + ERD F Y GL + Sbjct: 157 RFYDAGQKYGSFVGLQESLADRNVYSNDILKSYSKEELIEAGKMIAPERDTLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTP 356 L RY N E+PQ ++ +A+ L E +E+R E Y LS+ + +TP Sbjct: 217 LATRYLATDNSRGVFELPQERWLTIALYLMQDEKPRERRMQLVGEAYWALSNLYMTVATP 276 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G Sbjct: 277 TLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRG 336 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD R R Sbjct: 337 VSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGDQRLRA 396 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQ 528 HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + + Sbjct: 397 HDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFRKKYEE 456 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSNLCTEI Sbjct: 457 VVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEI 516 Query: 589 TLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK-----LAST 624 N S + VCNL SINL D L Sbjct: 517 LQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERL 576 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA + +D Sbjct: 577 IPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEAEDYSD 636 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 E E I++ + AS+ELA+E+G YS F+GS W G + + Sbjct: 637 ELYERINYLTVQASMELAKEKGTYSVFRGSDWHTG--------------EYFRARDYNSP 682 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + V Sbjct: 683 QWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRRPVAAP 742 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + D + A+++D + +RR Sbjct: 743 -------------------------------GLSLDTWPYYEKGAYKVDQFASVRQNARR 771 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q+ IDQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 815 >gi|291279559|ref|YP_003496394.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter desulfuricans SSM1] gi|290754261|dbj|BAI80638.1| ribonucleoside-diphosphate reductase alpha chain [Deferribacter desulfuricans SSM1] Length = 768 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 180/659 (27%), Positives = 302/659 (45%), Gaps = 80/659 (12%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYN 344 L +L RY G+ +E P+ F RVAM +AL + EK A EF++ Sbjct: 15 KLSANALTVLRKRYLKKDEKGNIVETPKGMFQRVAMNIALADLNYDKNADIEKTAKEFFD 74 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 ++ S F+ ++PTL N+G QLS+CF+ V D L IF A++ A++ K GG G + Sbjct: 75 IMVSLKFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSF 134 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R + T G S G + F+ V + + QGG R+GA L H D+ EF+ Sbjct: 135 SRLRPKDDVVKTTKGVSSGPVSFMTVFDSATETIKQGGTRRGANMGILRVDHPDIMEFIY 194 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D+ + + N + + + FM+ V + + L +P + Sbjct: 195 AKK----DKTKLTNFNLSVAVTEKFMEAVIKGEDYPLINPKD------------------ 232 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 KV +K++A ++ +M+ + +E G P I F D N +P G + S+N Sbjct: 233 ---------GKVVKKLNAKEVFDQMVKLAWEGGDPGIVFIDRINKDNPTPKEGEIESTNP 283 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C E L CNLGSINL N + +D+L I TAV LDNVID+N + I Sbjct: 284 CGEQPLLPY----ESCNLGSINLGKFVKNKKILWDELKKVIHTAVHFLDNVIDMNNYPIP 339 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + ++ +R IGLG+MG+ + LL IPY S +A+++A++ M FI +ASV+LA++ Sbjct: 340 QIEEMTKKNRKIGLGVMGWADMMALLEIPYNSEDALKLAEKVMSFIQEEGRNASVKLAEK 399 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RG++ +FK S++ + F + +RN+ Sbjct: 400 RGSFPNFKDSIYPEKGFKM----------------------------------LRNATVT 425 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I G S I+P + + ++ + D VN K+ + + ++ Sbjct: 426 TIAPTGTISIIAGASSGIEPYFAIAFYRNVLDNDKLVEVNPIFKEIAKREGFYSDELMEK 485 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSG 882 + G + +I+ +P+ K++ TA EI P+W ++ + Q++ D A S + +E + Sbjct: 486 IAES-GHLEDIDEVPEKWKRVFVTAHEISPIWHVKMQAAFQRYTDNAVSKTVNFPNEATV 544 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + + +Y A+ G K R S V K + V + + Sbjct: 545 EDVREVYLLAYKEGCKGITIYRDGSREGQVINVGTKDKKEETQTVEIRGQFRPRPRPKV 603 >gi|48696770|ref|YP_024594.1| ORF51 [Ostreid herpesvirus 1] gi|81986457|sp|Q6R7H4|RIR1_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase large subunit gi|41352434|gb|AAS00941.1| ORF51 [Ostreid herpesvirus 1] Length = 835 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 214/791 (27%), Positives = 357/791 (45%), Gaps = 70/791 (8%) Query: 204 FSSRTLIEKEPNYAKVTARF--LLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + LI P+YA + R + ++ T + E ++ Sbjct: 72 MAITPLIPSHPDYAFLAGRVSAYMTQINTPKTFTDAVYGIQMAVGETNGFRSPMKP--VK 129 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 G+ ++ ++ L + RD++ Y+G+ L + + +N E PQ F Sbjct: 130 GGLSDEIVD--FVNEHGARLDGMIDDVRDYSHNYMGITGLLNGVAIKVNKKLYERPQYVF 187 Query: 322 MRVAMGLA-LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 MRVAM + L + + Y L+S ++P LFN GT +SCFL + D++ Sbjct: 188 MRVAMAMTDLSSETALEDIWQTYMLISGQCLSMASPVLFNGGTSSSNTASCFLLDMGDNM 247 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + + L +GG+G +++ +R G+ I G GKS G+ L + + A +V+Q Sbjct: 248 VSITKKVAQTMTLIAKNGGIGINFSKLRATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQ 306 Query: 441 G-GKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 G KR GA+ YL WH D+ ++L R +G++ + H +N + DLFM+RV + Sbjct: 307 GENKRPGAIAGYLTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKE 366 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+LFSP++V L +LYG++F AY +E +IK +SA L+ + M++ TG Sbjct: 367 WSLFSPNDVVGLEELYGEKFVRAYRAHEA---NPKIKRT-TVSARKLFSDIANMMWSTGE 422 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF--ANNQF 616 P+I FKD N RS +H+G + +SNLC EI + E AVCNL +I + + Sbjct: 423 PYILFKDAVNERSNHKHLGTIKNSNLCCEIVQYCDTNEIAVCNLATICVSNFVNVETGEI 482 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAK----------------------------K 648 D++ +A A + ++N+ID + + + Sbjct: 483 DFEGIADAAGVACKGINNLIDKQNYDLGNEQLMRLADERTEEVVEVNGIKFDAKYNLVSY 542 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 SN HR G+G+ G L IPY S A +A E I + A+ SV++A+E+G Y Sbjct: 543 SNLKHRPQGIGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPY 602 Query: 709 S--SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + + +G D + RD W E+ K+ + G+ NS A Sbjct: 603 PSYYWDNNTHREGKLQFDFLEGFDRDRDL----THELFNWREVLKKFEKFGINNSVVTAQ 658 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 P+A+ + + +SI+ N + K G F ++N L +L+ +WD M+ D++ Sbjct: 659 PPSASSSQLNDNVESIEAITSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEA 718 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGK 883 +DGSI NIERIP ++++I+ TA EID +++ + Q +IDQ S N+++ + + Sbjct: 719 NDGSIQNIERIPKNIREIYKTAREIDHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQ 778 Query: 884 KLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + M LKT YY R A + GK+N + Sbjct: 779 LIMENVILGHKMKLKTGMYYTRGIPAMKQQNF------GKMNFQDKDIGKPVPELV---- 828 Query: 943 SCTSDTECEVC 953 +CE C Sbjct: 829 ------DCEAC 833 >gi|16804194|ref|NP_465679.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes EGD-e] gi|46908388|ref|YP_014777.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes serotype 4b str. F2365] gi|47091824|ref|ZP_00229619.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|47095729|ref|ZP_00233335.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|224500180|ref|ZP_03668529.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes Finland 1988] gi|224501046|ref|ZP_03669353.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes FSL R2-561] gi|226224762|ref|YP_002758869.1| ribonucleoside-diphosphate reductase, subunit alpha [Listeria monocytogenes Clip81459] gi|254825282|ref|ZP_05230283.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J1-194] gi|254826955|ref|ZP_05231642.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL N3-165] gi|254831408|ref|ZP_05236063.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 10403S] gi|254853281|ref|ZP_05242629.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL R2-503] gi|254899144|ref|ZP_05259068.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes J0161] gi|254912715|ref|ZP_05262727.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes J2818] gi|254931733|ref|ZP_05265092.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes HPB2262] gi|254937042|ref|ZP_05268739.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes F6900] gi|255519997|ref|ZP_05387234.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes FSL J1-175] gi|284802602|ref|YP_003414467.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5578] gi|284995744|ref|YP_003417512.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5923] gi|300764037|ref|ZP_07074033.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes FSL N1-017] gi|16411625|emb|CAD00233.1| lmo2155 [Listeria monocytogenes EGD-e] gi|46881659|gb|AAT04954.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47015872|gb|EAL06799.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|47019835|gb|EAL10573.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|225877224|emb|CAS05938.1| Putative ribonucleoside-diphosphate reductase, subunit alpha [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599336|gb|EEW12661.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL N3-165] gi|258606641|gb|EEW19249.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL R2-503] gi|258609645|gb|EEW22253.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes F6900] gi|284058164|gb|ADB69105.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5578] gi|284061211|gb|ADB72150.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 08-5923] gi|293583288|gb|EFF95320.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes HPB2262] gi|293590710|gb|EFF99044.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes J2818] gi|293594528|gb|EFG02289.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J1-194] gi|300515378|gb|EFK42429.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes FSL N1-017] gi|328465962|gb|EGF37143.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes 1816] gi|332312606|gb|EGJ25701.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str. Scott A] Length = 763 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 10 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + P + AR L KL ++ + + Y E Sbjct: 70 IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ DL+ + E+D F Y GL +L RY + E+PQ Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ K E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMS 424 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 738 WNEGLKTTYYVRSN 751 >gi|28198392|ref|NP_778706.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa Temecula1] gi|182681035|ref|YP_001829195.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa M23] gi|28056462|gb|AAO28355.1| ribonucleoside-diphosphate reductase alpha chain [Xylella fastidiosa Temecula1] gi|182631145|gb|ACB91921.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylella fastidiosa M23] gi|307579503|gb|ADN63472.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa subsp. fastidiosa GB514] Length = 830 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 236/807 (29%), Positives = 363/807 (44%), Gaps = 100/807 (12%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203 I + G + F+ RLE ++ + + D ++ DL LI Sbjct: 65 ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259 + + ++ P + AR L +L + + ++ Y + Sbjct: 125 REAESRVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 + + + + S +L+ + ERD F Y GL +L RY E+PQ Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDTSRGVFELPQ 236 Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 ++ +A+ L E + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G S GV+P++K Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R R HD+ T+ IPDLFM Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542 + V + W LF P EV + Y ++F E + E + + A Sbjct: 417 EAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------- 592 + ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCTEI N Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536 Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641 + + VCNL SINL D L I VR+LDNVID+N Sbjct: 537 SGNQIVTTKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A +N +RAIGLG G+ L I + S EA + +D E I++ I AS+EL Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDALYERINYLTIRASMEL 656 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G Y+ F GS W G + + W EL +V G+RN+ Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A+AP + A I G + SIDP Y Y + VV Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP----------------- 745 Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + D + A+++D I +RRQ+ +DQ+ S N Y+ Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 L ++ AW GLKTTYY+RS Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818 >gi|154250960|ref|YP_001411784.1| ribonucleotide-diphosphate reductase subunit alpha [Parvibaculum lavamentivorans DS-1] gi|154154910|gb|ABS62127.1| ribonucleoside-diphosphate reductase, alpha subunit [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 198/682 (29%), Positives = 296/682 (43%), Gaps = 94/682 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + RD G L DRY + E Q F RVA + A Y+ Sbjct: 62 VDHGRDALLTEFGKATLRDRYLM-----PGESYQDMFARVAS--FYADKGDAGHAQRLYD 114 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT+ SCFL D L GI G EN LA GG+G+ W Sbjct: 115 YISKLWFMPATPVLSNGGTQRGLPISCFLNEASDSLDGIVGLWNENVWLAAKGGGIGSYW 174 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G NGK+ G+IPF++V + +A++QG R+G+ YL H ++EEF++ Sbjct: 175 GNLRSIGETVGG-NGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLPIDHPEIEEFME 233 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V +A W L SP + Sbjct: 234 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVEADAEWQLKSPKD----------------- 276 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + +SA +LW ++LT ETG P+I +KD N P+ H V Sbjct: 277 ----------RSVQKTVSARSLWIRLLTSRIETGEPYIIYKDTVNNARPEHHKLAGLEVK 326 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC EITL + ++ L + ++ + I +R LDNV I Sbjct: 327 TSNLCAEITLPTGIDQHGEQRTAVCCLSSLNLETYNEWQDHPTIIEDVMRFLDNVLQDFI 386 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK + R++GLG+MGF S L IP+ A I + Sbjct: 387 DRAPDDMRRAKYAAMRERSVGLGVMGFHSYLQANMIPFEGVMAKVWNKRMFARIKEGVDA 446 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ERGA Sbjct: 447 ASKKLAEERGACP------------------------------------------DAAEY 464 Query: 757 GMR--NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G SN AIAPTA+I+ I G S I+P N + +SG F V N L L+ + Sbjct: 465 GFNERFSNKTAIAPTASISIITGGTSPGIEPIAANSFTHKTLSGSFNVRNRHLTKLLELK 524 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 D+ S + + GS+ +++ + D+ K + TAFE+D W+IE A R +DQAQS+ Sbjct: 525 GRNDDDTWSSIVVNGGSVQHLDFLSDEEKDVFKTAFELDQRWVIEHAGDRAPLVDQAQSV 584 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 NL+L + + L ++ AW G+K+ YY RS S EK+ + + Sbjct: 585 NLFLAADVHKRDLHKLHFMAWQHGVKSLYYCRSLSIQRAEKAEVVSLLP-----GKVLDV 639 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + + + EC CQ Sbjct: 640 LTLDQVAAEAQSNDYEECLACQ 661 >gi|27904670|ref|NP_777796.1| ribonucleotide-diphosphate reductase subunit alpha [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38605262|sp|Q89AS4|RIR1_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|27904067|gb|AAO26901.1| ribonucleoside-diphosphate reductase 1 alpha chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 761 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 186/786 (23%), Positives = 325/786 (41%), Gaps = 69/786 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + +G + N ++ ++ A GL+++S V ++ Y+ + + + +I Sbjct: 4 MLFVTKRNGKIELINLDKIHRVLNWAAKGLENISISQVALKSRIQFYNNIKTTIIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI + P+Y + AR + LR++ ++ I+ Sbjct: 64 KAAADLISENSPDYQYMAARLTIFHLRKKAFGQFNPPNL-----------YDHVKNMIKL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L D + + + +K+ RD F Y ++ L +Y + E Q Sbjct: 113 EKYDQHLLNDYPKQDFLIMNSFIKHRRDMNFSYAAVKQLEGKYLIQNRVTKKIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ ++ L + K FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILISACLFSKYPNETRMKYIKNFYDAISTFKISLPTPIMAGLRTPTRQFSSCVLIESED 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L I G+G + +R LG+ I + G IPF K + Sbjct: 233 NLNSINATTSAIVKYVSQRAGIGINAGRIRALGSPIRNGDTLHTGCIPFYKHFQSAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH ++E L L+ N G + R M+ + + L +R+ Sbjct: 293 SQGGVRGGAATIFYPIWHFEIESLLVLKNNRGIEENRVRHMDYSVQLNKLMYQRLILGEH 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V +L+D + ++FE Y YE + +K+ A L+ M+ Sbjct: 353 ITLFSPSDVPNLYDSFFNNQEKFERLYIKYE----NDKTIRKKKVKASYLFSLMMQERTS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG +I D CN S + SNLC EITL + + + G I+L A N Sbjct: 409 TGRIYIQNVDHCNSHSAFNPKIAPIRQSNLCLEITLPTKALQDVHDKNGEISLCTLSAIN 468 Query: 615 ---QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + + L+ VR LD+V+D + I AKKS + R +G+G++ F L Sbjct: 469 LGSLNNLNDLSKLSNLIVRALDSVLDYQEYPILSAKKSALSRRTLGIGVINFAYYLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+ A + + E I +H ++AS LAQE+GA F + + +G+ PID+ + Sbjct: 529 VRYSDGSANNLTHRTFEAIQYHLLNASCVLAQEKGACHWFSHTNYYKGILPIDTYKKNVD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 N L W+ L+K++K G+RNS A+ P+ T + I + I+P + + Sbjct: 589 EI----CNEPLHLDWELLRKKIKKYGLRNSTLSALMPSETSSQISNATNGIEPPRGLISI 644 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K++ G V +R + ++ ++ + G + Sbjct: 645 KASKDGMLRQVVPEY-----KRLKNNYELLWNIPNNTGYLQ------------------- 680 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 AS QK++DQ+ S N ++ ++L A+ +GLKT YY Sbjct: 681 -------LASIMQKFVDQSISANTNYDPKLFPNNKIPMQQLILDLLTAYKLGLKTLYYQN 733 Query: 905 SRSATS 910 +R S Sbjct: 734 TRDGAS 739 >gi|307571741|emb|CAR84920.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes L99] Length = 757 Score = 420 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 4 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 63 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + P + AR L KL ++ + + Y E Sbjct: 64 IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 118 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ DL+ + E+D F Y GL +L RY + E+PQ Sbjct: 119 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 178 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ K E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 179 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 238 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 239 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 298 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 299 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 358 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 359 WYLFDPHEVKAKKGWYLQDFYDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 418 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 419 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 478 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 479 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 535 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 536 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 595 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 596 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 641 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 642 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 675 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 676 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 731 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 732 WNEGLKTTYYVRSN 745 >gi|16801323|ref|NP_471591.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria innocua Clip11262] gi|16414771|emb|CAC97487.1| lin2259 [Listeria innocua Clip11262] Length = 763 Score = 420 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 10 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + P + AR L KL ++ + + Y E Sbjct: 70 IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ DL+ + E+D F Y GL +L RY + E+PQ Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ K E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 738 WNEGLKTTYYVRSN 751 >gi|217963684|ref|YP_002349362.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes HCC23] gi|290893102|ref|ZP_06556090.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J2-071] gi|217332954|gb|ACK38748.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria monocytogenes HCC23] gi|290557264|gb|EFD90790.1| oxygen-dependent ribonucleotide-diphosphate reductase alpha subunit NrdA [Listeria monocytogenes FSL J2-071] Length = 763 Score = 420 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 246/794 (30%), Positives = 371/794 (46%), Gaps = 85/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 10 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + P + AR L KL ++ + + Y E Sbjct: 70 IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ DL+ + E+D F Y GL +L RY + E+PQ Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ K E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDETKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 738 WNEGLKTTYYVRSN 751 >gi|319785672|ref|YP_004145147.1| ribonucleoside-diphosphate reductase, subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317464184|gb|ADV25916.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudoxanthomonas suwonensis 11-1] Length = 814 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 247/805 (30%), Positives = 369/805 (45%), Gaps = 89/805 (11%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSET--YKNMYDGLSESDLETALI 203 I + G ++F+ RLE ++ +G + + LS DL LI Sbjct: 54 ITKEAGNRRLAFDPARLERSIDVIAAGFPQLEIGDYKRAVLGFVARKPALSADDLVDHLI 113 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + ++ P + + AR L +L + + + Y + Sbjct: 114 REAEARVDLTAPEWERFAARLYLRRLYKRASRNRFYDAGQKY-----GSYVGLQESLADR 168 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFF 321 G+ + + + +L ++ ERD F Y GL +L RY E+PQ + Sbjct: 169 GIYSNDILRAYSKEELEEAGRMIEPERDKLFAYNGLYLLATRYLATDTARNVYELPQERW 228 Query: 322 MRVAMGLALKETEKEKRAV---EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 + +A+ L +E +E+R E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 229 LTIALYLMQEEKPRERRMQLVGEAYWALSNLYMTVATPTLQNAGKVGGQLSSCFIDTVDD 288 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K GG+G VR GA I G S GV+P++K N+TAV+V Sbjct: 289 SLQGIYDSNTDIARVSKGGGGVGAYLGYVRAAGAPIRGVPNSSGGVVPWIKQLNNTAVSV 348 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGAV YL+ WH D+E FLDLR N GD R R HD+ TA IPDLFM+ V + Sbjct: 349 DQLGQRKGAVAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTAVCIPDLFMEAVERRGD 408 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E ++ + ++ R + A+ L+++++ Sbjct: 409 WYLFDPHEVKQAKGWYLQDFYDERRGEGSFRSKYQELVEDGRIGRRTVKAIDLFKRIMVS 468 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N ++P +H G V+SSNLCTEI N S Sbjct: 469 QLETGNPFMFYRDEVNRKNPNKHCGTVYSSNLCTEILQNQSPTRMIQEVISGNQIVTTRQ 528 Query: 596 --ETAVCNLGSINLLA--HFANNQFDY--DKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 + VCNL SINL A+ Q D D L + VR+LDNVID+N + +A + Sbjct: 529 AGDFVVCNLSSINLGRAVVQADGQGDLISDVLERLVPIQVRMLDNVIDLNQLPVPQATIT 588 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N +RAIGLG G+ L L I + S EA + +D E I+ AI AS+ELA+E+G Y Sbjct: 589 NRRYRAIGLGTFGWHHLLALKGIHWDSKEAEDYSDALYERINRLAIQASMELAKEKGTYP 648 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F GS W G + W +L +V G+RN +A+AP Sbjct: 649 AFPGSDWHTG--------------AYFRERGYNSPEWLDLAAQVAVNGLRNGWLLAVAPN 694 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + A I G S SIDP Y Y + V Sbjct: 695 MSTAQIAGSSASIDPVYSAFYYEEKKDYRRPVAAP------------------------- 729 Query: 830 SIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 + + + A+++D + +RRQ+ +DQA S NLY+ L Sbjct: 730 ------GLSLETWPYYEKGAWKVDQFASVRQNARRQRHVDQAISFNLYVPSSIRASVLLE 783 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVE 912 ++ + W GLKTTYY+RS E Sbjct: 784 LHLEGWRQGLKTTYYVRSNDIDVAE 808 >gi|262277046|ref|ZP_06054839.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha proteobacterium HIMB114] gi|262224149|gb|EEY74608.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha proteobacterium HIMB114] Length = 646 Score = 419 bits (1077), Expect = e-114, Method: Composition-based stats. Identities = 202/682 (29%), Positives = 293/682 (42%), Gaps = 103/682 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G+ L DRY E Q F RVA A + A YN Sbjct: 56 IDRSRDANLTDFGMATLTDRYLSEN-----ESYQDLFARVAATYA----DDNLHAQRLYN 106 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N+GT SCFL D L GI EN LA GG+G+ W Sbjct: 107 YISKLWFMPATPVLSNAGTSRGLPISCFLNEAADSLDGIVNLWSENVWLAAKGGGIGSYW 166 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + GK+ G+IPF+KV + +A++QG R+G+ YL H ++EEF++ Sbjct: 167 GNLRAIGEKVGRV-GKTSGIIPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIE 225 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D RR +++ + D FM+ V +A W L SP + Sbjct: 226 MRRPTGGDPNRRALNLHHGVLVTDAFMRAVETDADWPLKSPYD----------------- 268 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V I A LW ++LT ETG P+I + D N PQ H V Sbjct: 269 ----------GTVQSTIKARNLWIRLLTARVETGEPYIVYIDTVNRMIPQHHKLAGLTVK 318 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +SNLC+EITL + ++ L + N ++ I +R+LDNV+ Sbjct: 319 TSNLCSEITLPTGIDKYGKDRTAVCCLSSLNLENYDEWKDEPGFIEDIMRMLDNVLSDFI 378 Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + ++ K S R++GLG+MGF S + IP S A + +FI + Sbjct: 379 NRAPESFKDAKYSAMRERSVGLGVMGFHSYMQRHMIPIESVMAKVWNKKMFQFIDKEVNA 438 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ERG Sbjct: 439 ASKKLAEERGPCP------------------------------------------DAAEY 456 Query: 757 GMR--NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+ SN AIAPTA+I+ ICG S I+P N Y +SG F V N +L L++ Sbjct: 457 GINERFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKKILQKY 516 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + + S + + GS+ +++ + D K + TAFEID WLI+ ++ R +I QAQSL Sbjct: 517 NQDTNEVWSSITTNQGSVEHLDFLSQDEKDVFKTAFEIDQRWLIDHSADRTPYISQAQSL 576 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 N+++ + K L I+ QAW GLK+ YY RS+S E V + Sbjct: 577 NVFIPADIHKKDLHQIHYQAWKKGLKSLYYCRSKSIQRAE------------VVNTSFAK 624 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + EC CQ Sbjct: 625 TKKQKSQENQQTNDYEECLSCQ 646 >gi|71901121|ref|ZP_00683228.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|71729126|gb|EAO31250.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] Length = 830 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 236/807 (29%), Positives = 363/807 (44%), Gaps = 100/807 (12%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203 I + G + F+ RLE ++ + + D ++ DL LI Sbjct: 65 ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259 + + ++ P + AR L +L + + ++ Y + Sbjct: 125 REAESRVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQ 318 + + + + S +L+ + ERD F Y GL +L RY E+PQ Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASCGVFELPQ 236 Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 ++ +A+ L E + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G S GV+P++K Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R R HD+ T+ IPDLFM Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542 + V + W LF P EV + Y ++F E + E + + A Sbjct: 417 EAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------- 592 + ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCTEI N Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536 Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641 + + VCNL SINL D L I VR+LDNVID+N Sbjct: 537 SGNQIVTTKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A +N +RAIGLG G+ L I + S EA + +D E I++ I AS+EL Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDALYERINYLTIRASMEL 656 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G Y+ F GS W G + + W EL +V G+RN+ Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A+AP + A I G + SIDP Y Y + VV Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP----------------- 745 Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + D + A+++D I +RRQ+ +DQ+ S N Y+ Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 L ++ AW GLKTTYY+RS Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818 >gi|16330926|ref|NP_441654.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803] gi|3914655|sp|P74240|RIR1_SYNY3 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|1653420|dbj|BAA18334.1| ribonucleotide reductase subunit alpha [Synechocystis sp. PCC 6803] Length = 767 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 215/798 (26%), Positives = 364/798 (45%), Gaps = 86/798 (10%) Query: 130 AAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM 189 A + + + +++++ DG+ N ++ +V+ AC GL +V+S + + + Sbjct: 16 DAHAGTSQGSHQGHRIQVIRRDGSSTPLNIGKIRAVVDWACLGL-EVNSIALEAGLTTRL 74 Query: 190 YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +G+S +++ LI + + EP++ V R + L ++ L Sbjct: 75 REGISTREIQDNLISCALEMCSPNEPDWRYVAGRLHVWSLWKDTL---------VRRGYQ 125 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Y + G + + +L + + D ++Y G +L RY L Sbjct: 126 YGQYLRTVQTKVTNGEYDSRILT-YSEGELQEAGCWINSDWDTDYDYAGAVLLTSRYLL- 183 Query: 309 INGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 E+PQ + A+ LA E + + A FY +++ +TP L N Sbjct: 184 ----PNELPQEALLTCALLLASVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGG 239 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L+SCF+ + D+L IFG + A ++K GG+G + + +R G+ + G S GVIP Sbjct: 240 SLTSCFIVAMEDNLESIFGEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIP 299 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + K+ NDTA+AVNQGG+R GAV L+ WH+DV EFL+++ GD RR+ +D+ +P Sbjct: 300 WTKLLNDTAIAVNQGGRRAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILP 359 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKIS 541 D FM+RV WTL P EV + +L+G++FE AY E I ++++I+ Sbjct: 360 DEFMRRVINKEDWTLVDPYEVREKMGIELAELWGEQFEGAYREIE-SNLDTTITLYKRIN 418 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVC 600 A L+++++ ETG P+++FKD N +P +H+G + +NLC E N + ++ C Sbjct: 419 ARELFKQIMRTQVETGMPYLSFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCC 478 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL S+NL D +A + AVR+LDN I++ AK N+ +R IG+G Sbjct: 479 NLVSLNLANL------DLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGVGA 532 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG L + Y + E I + +S+ELA+ERGAY +F GS W +G+ Sbjct: 533 MGLADWLAKRRLNYDELADIN---RLFEEIGYWCTQSSMELAKERGAYPAFPGSDWQKGL 589 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + ++ N W++L ++T G+RNS+ AIAP + + + G + Sbjct: 590 L------IGSKPVSWFQANAAKPERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTA 643 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI P Y + G + F+ N W P++ Sbjct: 644 SILPVYSRFFYDKWAKGTVPIAPPFIGN-----CFW-------------------FYPEN 679 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLY----LDEP-----SGKKLDF 887 T +D ++++ + Q+W D S+ NL E + K + Sbjct: 680 -----KT---MDQRKVVKAVAAIQQWTDTGISMELLFNLNAGIYFPEEPERSLNAKDIFD 731 Query: 888 IYRQAWLMGLKTTYYLRS 905 AW G K YY+R+ Sbjct: 732 TLVMAWEAGCKAIYYIRT 749 Score = 40.6 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%) Query: 1 MHPSKDVNKGDEDAFPSLAYPFPEKIKG--VQVIKRNGGVTSFDPSKISRAIMKAFMAVE 58 MHP+ A + A +G +QVI+R+G T + KI + A + +E Sbjct: 1 MHPTLISAPISSSANDAHAGTSQGSHQGHRIQVIRRDGSSTPLNIGKIRAVVDWACLGLE 60 Query: 59 GKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQD 100 + LT + + +IQD Sbjct: 61 VNSIALEA-------GLTTRLREGISTR----------EIQD 85 >gi|58040421|ref|YP_192385.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconobacter oxydans 621H] gi|58002835|gb|AAW61729.1| Ribonucleoside-diphosphate reductase alpha chain [Gluconobacter oxydans 621H] Length = 658 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 203/682 (29%), Positives = 296/682 (43%), Gaps = 92/682 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L +RY L E QA F RVA A Y+ Sbjct: 57 VDRSRDSLLTDFGKATLNNRYLL-----PGEDYQALFARVASYYGA----DAGHAQRIYD 107 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI G EN LA GG+G+ W Sbjct: 108 YISRHWFMPATPVLSNGGTERGLPISCFLNEAEDSLSGIVGLWNENVWLASKGGGIGSYW 167 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G +I NGK+ GVIPF++V + +A++QG R+G+ YL WH +VEEF++ Sbjct: 168 GNLRSIGENIGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEVEEFVE 226 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 227 MRRPTGGDPNRKALNLHHGVLVTDAFMRAVENDEEWALLSPKD----------------- 269 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 RK+SA LW ++LT E G P+I + D N P+ H V Sbjct: 270 ----------HSTIRKVSARGLWIRILTARMEQGEPYIIYSDHVNRARPEHHKLAGLEVK 319 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC EITL + + L + ++ I + LDNV I Sbjct: 320 TSNLCAEITLPTGIDHHGKNRTAVCCLSSLNLETWDEWKDDPQFIEDVMLFLDNVLQDFI 379 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D + +AK + R++GLG+MGF S L IP+ S A + E I A + Sbjct: 380 DRAPDDMARAKYAAARERSVGLGVMGFHSFLQARMIPFESVMAKVWNRKIFEHIRKQADA 439 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA+ RG Sbjct: 440 ASKHLAEVRGPCP------------------------------------------DAAEY 457 Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G S+ +AIAPTA+I+ I G S I+P N++++ +SG F+V N L L++R Sbjct: 458 GFMERFSHKLAIAPTASISIITGNASPGIEPISANVFLQKTLSGSFSVRNRHLKKILEER 517 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + + S + + GS+ N++ + D K + TAFE+D W++E A+ R +I QAQS+ Sbjct: 518 GYDTDEVWSAITLNKGSVQNLDFLTQDEKDVFKTAFELDQRWVVEHAADRAPFICQAQSV 577 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 NL+L + + L I+ QAW GLK+ YY RS S + + V + + Sbjct: 578 NLFLPADVHKRDLHQIHFQAWKKGLKSLYYCRSLSVQRADAVSNLAVKSDILEDEKYEAT 637 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + G S EC CQ Sbjct: 638 AQAAPRGE-MSSGDYEECLSCQ 658 >gi|87198299|ref|YP_495556.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium aromaticivorans DSM 12444] gi|87133980|gb|ABD24722.1| Ribonucleoside-diphosphate reductase [Novosphingobium aromaticivorans DSM 12444] Length = 667 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 202/678 (29%), Positives = 302/678 (44%), Gaps = 96/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY L E Q F RVA A + ++ A Y+ Sbjct: 77 DDSRDVNLTDFGKDTLDDRYLL-----PGEKYQDLFARVADAYA----DDQEHAQRLYDY 127 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT SC+L +V D L GI EN LA GG+G W Sbjct: 128 ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVATWNENVWLASRGGGIGTYWG 187 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 188 KVRGIGESVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDVSHPEIEEFLEI 246 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V A + L SP + Sbjct: 247 RKPSGDFNRKALNLHHGVLLTDEFMEAVRDGAEFHLRSPKD------------------- 287 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V + A +L++K++ TG P+I F D N P+ H V +S Sbjct: 288 --------GSVRSTVDARSLFQKLVETRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTS 339 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + +++ + +R LDNV ID Sbjct: 340 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLETWDEWNGDKRFVEDVLRFLDNVLQDYIDR 399 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++G+G+MGF S L I + S A + + ++ A AS Sbjct: 400 APDEMARAKYSAARERSVGMGVMGFHSFLQKKGIAFESAMAKAWNLKMFKHVAAKADEAS 459 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LAQERGA D + V Sbjct: 460 ILLAQERGACP-------------------------------------DAAEMGVMQ--- 479 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S MAIAPTA+I+ ICG S I+P N+Y +SG F V N +L L + Sbjct: 480 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLQKLLADKSKDS 539 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + + H GS+ +++ + + K ++ T+FEID WL+E A+ R +IDQAQSLNLY+ Sbjct: 540 TNVWNSILEHGGSVQHLDFLSVEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLNLYI 599 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ QAW G+K+ YYLRS+S D + Sbjct: 600 PADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA----------GFAGGVEADNTAEAP 649 Query: 937 SLGIPSSCTSDTECEVCQ 954 + + ++ T EC CQ Sbjct: 650 KIELATAETDYEECLACQ 667 >gi|206900775|ref|YP_002251097.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus thermophilum H-6-12] gi|206739878|gb|ACI18936.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus thermophilum H-6-12] Length = 751 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 178/638 (27%), Positives = 287/638 (44%), Gaps = 83/638 (13%) Query: 289 RDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------E 341 R L IL RY G+ IE P+ F RVA +A + +A Sbjct: 2 RKVELTEQALMILEKRYLKKDEKGNVIETPEEMFERVAETIAKVDLIYNPKADLEAIKNT 61 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+++ S F+ ++PTL N+G QLS+CF+ + D L IF L+ A++ + GG G Sbjct: 62 FYDMMVSLEFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTG 121 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R G + T G + G + F+KV + + QGG R+GA L H D+EE Sbjct: 122 FSFSKLRPKGDIVKTTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRIDHPDIEE 181 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ + D + N + I D FM+ V ++ + L +P Sbjct: 182 FITCK----DQEGVLSNFNISVAITDSFMEAVLKDEDFPLINPR---------------- 221 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +V RK+ A L+ ++ ++ G P + F D N ++P VG + S Sbjct: 222 -----------NKEVVRKVKARDLFDLIVKQAWKNGEPGVVFIDEINRKNPTPEVGEIES 270 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVID 637 +N C E L CNLGSINL + D+DKL T+ AV LDNVID Sbjct: 271 TNPCGEQPLLPF----ESCNLGSINLGKMLKRVGEKYEIDWDKLKITVHNAVHFLDNVID 326 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 N + ++ ++ +R IGLG+MGF L L +PY + EA +IA+ M FI A A Sbjct: 327 ANFYPLKPIEEMTKANRKIGLGVMGFYDLLVRLEVPYNTKEARDIAENIMSFIQREASEA 386 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S +LA+ERG + ++ S++ Sbjct: 387 SQKLAEERGVFPNWDKSIYKDMGLK----------------------------------- 411 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RN+ IAPT +I+ I S I+P + + + G++ V L + D++ Sbjct: 412 LRNATLTTIAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKEDIYS 471 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E +I + +G+I +++ IP+ LK++ TA +IDP + + QK++D A S + L Sbjct: 472 EDLIEKIV-QEGTIQHMDEIPERLKRLFVTALDIDPEDHVLMQAAFQKYVDNAVSKTVNL 530 Query: 878 -DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + + + +Y A+ + LK R +S S S Sbjct: 531 RESATLEDIRRVYLMAYDLKLKGITVYRDKSRASQVLS 568 >gi|15837798|ref|NP_298486.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa 9a5c] gi|9106168|gb|AAF84006.1|AE003954_3 ribonucleoside-diphosphate reductase alpha chain [Xylella fastidiosa 9a5c] Length = 830 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 237/807 (29%), Positives = 363/807 (44%), Gaps = 100/807 (12%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203 I + G + F+ RLE ++ + + D ++ DL LI Sbjct: 65 ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259 + ++ P + AR L +L + + ++ Y + Sbjct: 125 REAEARVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 + + + + S +L+ + ERD F Y GL +L RY E+PQ Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASRGVFELPQ 236 Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 ++ +A+ L E + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G S GV+P++K Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R R HD+ T+ IPDLFM Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542 + V + W LF P EV + Y ++F E + E + + A Sbjct: 417 EAVERRGDWYLFDPYEVKCVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------- 595 + ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCTEI N + Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536 Query: 596 ------------ETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641 + VCNL SINL D L I VR+LDNVID+N Sbjct: 537 SGNQIVTTKQAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A +N +RAIGLG G+ L I + SPEA + +D E I++ I AS+EL Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSPEAEQYSDALYERINYLTIRASMEL 656 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G Y+ F GS W G + + W EL +V G+RN+ Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A+AP + A I G + SIDP Y Y + VV Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVVAP----------------- 745 Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + D + A+++D I +RRQ+ +DQ+ S N Y+ Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 L ++ AW GLKTTYY+RS Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818 >gi|294664799|ref|ZP_06730123.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605430|gb|EFF48757.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 836 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 236/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RLE +++ + + + Sbjct: 49 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 108 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 109 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 160 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 161 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 220 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 221 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 280 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 281 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 340 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 341 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 400 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 401 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFR 460 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 461 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 520 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 521 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 580 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 581 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 640 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 641 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 686 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 687 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 746 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + + + A+++D + Sbjct: 747 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 775 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 776 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 824 >gi|315304278|ref|ZP_07874627.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria ivanovii FSL F6-596] gi|313627357|gb|EFR96141.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria ivanovii FSL F6-596] Length = 763 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 243/794 (30%), Positives = 369/794 (46%), Gaps = 85/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + +L L Sbjct: 10 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYPADELVDYL 69 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + P + AR L KL ++ + + Y E Sbjct: 70 IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ +L+ + E+D F Y GL +L RY + E+PQ Sbjct: 125 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 185 WLTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 245 SLQSIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI+AS +LAQE+GAY FKG Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 601 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPGL--------------------------N 681 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 738 WNEGLKTTYYVRSN 751 >gi|325914791|ref|ZP_08177128.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538984|gb|EGD10643.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas vesicatoria ATCC 35937] Length = 833 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 237/829 (28%), Positives = 373/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + H+++ I + G I F ++RL +++ + + + Sbjct: 46 RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEAERLNRAIDQIHAEFPQLDVADYKRSVF 105 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 106 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 157 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 158 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 217 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY N E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 218 LATRYLATDNSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 277 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 278 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 337 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 338 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGD 397 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 398 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 457 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 458 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 517 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 518 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGAD 577 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 578 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 637 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 638 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 683 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 684 DYNSPQWLELSAQVSVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 743 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + + + A+++D + Sbjct: 744 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 772 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 773 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 821 >gi|58424691|gb|AAW73728.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 839 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 237/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RLE +++ + + + Sbjct: 52 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 111 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 112 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 163 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 164 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 223 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 224 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 283 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 284 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 343 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 344 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 403 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 404 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFR 463 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 464 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 523 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 524 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 583 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 584 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 643 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 644 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 689 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 690 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 749 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + D + A+++D + Sbjct: 750 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 778 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 779 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 827 >gi|114798532|ref|YP_759596.1| ribonucleotide-diphosphate reductase subunit alpha [Hyphomonas neptunium ATCC 15444] gi|114738706|gb|ABI76831.1| ribonucleoside-diphosphate reductase, alpha subunit [Hyphomonas neptunium ATCC 15444] Length = 593 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 193/678 (28%), Positives = 293/678 (43%), Gaps = 102/678 (15%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G + L DRY L E Q F RVA A + + Y+ Sbjct: 9 DPSRDSLLTDFGKKTLDDRYLL-----PGETYQDMFARVATAYA----DDAEHGQRIYDY 59 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N G SCFL V D L I EN LA GG+G W Sbjct: 60 ISRLWFMPATPVLSNGGADRGLPISCFLNQVGDSLDDIVETWTENVWLASNGGGIGTYWG 119 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR +G + NG++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 120 NVRSIGEKVGQ-NGQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLEI 178 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R++ +++ I D FM+ V + + L SP Sbjct: 179 RKTSGDFNRKSLNLHHGINITDAFMEAVRNDEEFGLISPKS------------------- 219 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 +V + ++A LW+K+L + +TG P++ F D N P V S Sbjct: 220 --------GEVLKYVNARKLWQKLLELRMQTGEPYLLFTDTVNNALPAHQKRLGLKVTQS 271 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLC+EITL + + L + A ++ K + R LDNV++ Sbjct: 272 NLCSEITLPTGVDHRGTDRTAVCCLSSVNAETFLEWSKEPMFLEDIFRFLDNVLEDFIQR 331 Query: 643 IEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 S R++GLG+MGF S L +++ S A + + + I A +AS Sbjct: 332 APPEMARAVYSAKRERSVGLGVMGFHSFLQAMNVSMESATAKSLNLKIFKHIRQGADAAS 391 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 V+LA+ERG D + +R Sbjct: 392 VKLAKERGPCE------------------------DARDVGMMAR--------------- 412 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 SN MA+APTA+I+ ICG S I+P N+Y +SG FTV N L L + L Sbjct: 413 -FSNKMAVAPTASISIICGGTSAGIEPIPANVYTHKTLSGSFTVKNQQLETLLDTKGLNT 471 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + + H+GS+ +++ + K + TAFE+D W+IE A+ R +I Q+QSLNL+L Sbjct: 472 NEIWTSILEHEGSVQHLDCLDAHEKDVFKTAFELDQRWIIELAADRTPFICQSQSLNLFL 531 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + + L ++ AW GLK+ YY RS+S + Sbjct: 532 PGDINKWDLHMLHWTAWERGLKSLYYCRSKSVQRA----------------AFAGSEKAE 575 Query: 937 SLGIPSSCTSDTECEVCQ 954 + + + T EC CQ Sbjct: 576 ASTLEVARTDYDECLACQ 593 >gi|294625676|ref|ZP_06704298.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600045|gb|EFF44160.1| ribonucleotide-diphosphate reductase alpha subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 832 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 236/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RLE +++ + + + Sbjct: 45 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFR 456 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 636 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + + + A+++D + Sbjct: 743 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 771 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820 >gi|166710316|ref|ZP_02241523.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzicola BLS256] Length = 832 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 237/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RLE +++ + + + Sbjct: 45 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQVHAEFPQLDVADYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYM 276 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 456 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 636 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + D + A+++D + Sbjct: 743 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 771 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820 >gi|78049717|ref|YP_365892.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927515|ref|ZP_08188753.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas perforans 91-118] gi|78038147|emb|CAJ25892.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542108|gb|EGD13612.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas perforans 91-118] Length = 832 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 235/829 (28%), Positives = 368/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RL +++ + + + Sbjct: 45 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANGSFR 456 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 636 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + + + A+++D + Sbjct: 743 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 771 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820 >gi|322418582|ref|YP_004197805.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] gi|320124969|gb|ADW12529.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] Length = 745 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 181/662 (27%), Positives = 305/662 (46%), Gaps = 81/662 (12%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345 L +L RY G +E F RVA +A ++ +K+ + +FYN+ Sbjct: 13 LTKNALTVLEKRYLKRDQTGKTLETAADMFRRVATAIAQADSVFDKKADISALSDKFYNM 72 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +++F F+ ++PTL N+G QLS+CF+ V D + IF +++ A++ K GG G ++ Sbjct: 73 MTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFS 132 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G + F++V + + QGG R+GA A L H D+ +F+ Sbjct: 133 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMC 192 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + +D+R+ ++ N + I + FMK V + + L +P + Sbjct: 193 K----NDQRQLNNFNISVGITEEFMKAVDADKDYNLVNPRD------------------- 229 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K ++A ++ +++ +E G P I F D N +P H+G + S+N C Sbjct: 230 --------KKQAGTLNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + + D+DKL ++TAV LDNVI++N + +E+ Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVVHGKVDWDKLKEVVQTAVHFLDNVIEVNNYPLEQ 337 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + ++R IGLG+MG+ L +L IPY S E+VE+ ++ M+FI+ AS +LA+ R Sbjct: 338 IDQMTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGKIASRKLAKSR 397 Query: 706 GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 GA+ +FKGS++ G P +RN+ Sbjct: 398 GAFPNFKGSIYDAPGADP-----------------------------------IRNATVT 422 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I S ++P + +V+ M + V VN K + + E ++ Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSFVRQVMDKNILVEVNPLFEKIAKDQGFYSEELMQR 482 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + H G++ +I IP+ ++ + TA +I P I + Q+ D A S + E + Sbjct: 483 IAEH-GTVQDISAIPEGVRDVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPREATI 541 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + ++ +YR A+ K R S S K + K+ A PV P Sbjct: 542 EDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAKIAAPPVHIEEKRGAKRERPK 601 Query: 943 SC 944 + Sbjct: 602 AL 603 >gi|84622096|ref|YP_449468.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899022|ref|YP_199113.2| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366036|dbj|BAE67194.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 832 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 237/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RLE +++ + + + Sbjct: 45 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFR 456 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 636 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + D + A+++D + Sbjct: 743 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 771 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820 >gi|11499254|ref|NP_070492.1| ribonucleotide-diphosphate reductase subunit alpha [Archaeoglobus fulgidus DSM 4304] gi|2648891|gb|AAB89584.1| ribonucleotide reductase (nrd) [Archaeoglobus fulgidus DSM 4304] Length = 752 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 173/626 (27%), Positives = 286/626 (45%), Gaps = 79/626 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNL 345 +L RY L G+ IE P+ RVA +A E E+ A +F+ L Sbjct: 1 MKLNRTAETVLRKRYLLKDDEGNVIETPEEMCWRVARAIAKAEENYGNNAEEWAEKFFKL 60 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 L FM ++PTL N+GT QLS+CF+ V D + GIF AL + A + K GG G ++ Sbjct: 61 LWEQKFMPNSPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFS 120 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + T G + G + F+K+ + + QGG+R+GA L H D+EEF+ Sbjct: 121 RLRPKGDIVKSTMGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLNVHHPDIEEFIKA 180 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + + + N + D FM+ + ++ + L +P Sbjct: 181 KW----EEGVLRNFNISVAATDAFMEALKKDDDYDLINPRT------------------- 217 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V R++ A ++ ++ + G P + F D N +P HVG + ++N C Sbjct: 218 --------GEVVRRVPARKIFNLIVEGAWRNGEPGMIFIDTINRFNPTPHVGQIEATNPC 269 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + + D+D L + AVR LD+VID+N + I + Sbjct: 270 GEQPLLPY----ESCNLGSINLAKFVKDGEIDWDGLREVVWIAVRFLDDVIDVNSYPIPE 325 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ +R IGLG+MG+ L LL+IPY S EA+++A++ M+FI + AS +LA+ER Sbjct: 326 IEQMTKANRKIGLGVMGWADMLFLLNIPYDSDEAIQLAEKVMKFIQEESHRASQQLAEER 385 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G + ++KGS+W + + M + Sbjct: 386 GVFPNWKGSVW---------------EKKGIKMRNATTTTIAPTGTI------------- 417 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMISD 823 + I G S I+P + Y ++N+ +F +N L++R L+ + +I Sbjct: 418 -------SIIAGCSSGIEPIFALAYKRTNILDGEEFFEINEIFEEVLRRRGLYTDELIEK 470 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + GSI IE IP+D++++ A +I P W + + QK+ D A S + + + Sbjct: 471 VAE-KGSIQEIEEIPEDIRRVFKCALDISPEWHVRMQAAFQKYTDNAVSKTINMPNSATR 529 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSA 908 K ++ + A+ +G K R S Sbjct: 530 KDVEKAFLLAYELGCKGITVYRDGSR 555 >gi|21244792|ref|NP_644374.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas axonopodis pv. citri str. 306] gi|21110490|gb|AAM38910.1| ribonucleoside-diphosphate reductase alpha chain [Xanthomonas axonopodis pv. citri str. 306] Length = 832 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 235/829 (28%), Positives = 369/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RL+ +++ + + + Sbjct: 45 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLDRAIDQIHAEFPQLDVADYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 397 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFR 456 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 636 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + + + A+++D + Sbjct: 743 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 771 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820 >gi|296116312|ref|ZP_06834928.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter hansenii ATCC 23769] gi|295977131|gb|EFG83893.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter hansenii ATCC 23769] Length = 620 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 207/682 (30%), Positives = 295/682 (43%), Gaps = 92/682 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L +RY L G Q F RVA E A Y+ Sbjct: 19 VDRSRDALLTAFGKATLDNRYLLPGEGY-----QDLFGRVASYYGADEG----HAQRLYD 69 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 70 YISRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G ++ NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++ Sbjct: 130 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 188 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LR+ TG D R+ +++ I D FM+ V + W L SP + Sbjct: 189 LRRPTGGDPNRKALNLHHGILISDAFMRAVAADEEWALLSPKD----------------- 231 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 RK+SA +LW ++LT E G P+I + D N PQ H V Sbjct: 232 ----------GSHIRKVSARSLWIRILTARMEQGEPYIIYSDHVNNARPQHHKLAGLEVK 281 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC EITL + + L + ++ I + LD V I Sbjct: 282 TSNLCAEITLPTGMDHHGKERTAVCCLSSLNLETWDEWKDDPQFIEDVMLFLDRVLQDFI 341 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D +E+AK + R++GLG+MGF S L +IP+ S A E I A + Sbjct: 342 DRAPDDMERAKYAAARERSVGLGVMGFHSFLQAKNIPFESVIAKVWNKRIFEHIRKQADA 401 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LAQ GA Sbjct: 402 ASHKLAQSLGACP------------------------------------------DAAEY 419 Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+ SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L Q+ Sbjct: 420 GVMERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLDRLLTQK 479 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + + S + + GS+ +++ + K + TAFE+D W+IE A+ R +I QAQS+ Sbjct: 480 GRNTDDVWSSITLNKGSVQHLDFLDQQEKDVFKTAFELDQRWVIEHAADRAPFICQAQSI 539 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 NL+L + L I+ AW G+K+ YY RS S + + G TD Sbjct: 540 NLFLPANVHKRDLHQIHYMAWKRGVKSLYYCRSLSVQRAD-AVSDGKVKNDIMQKETDEA 598 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 P+S T EC CQ Sbjct: 599 LPPIPPAAPASSTDYEECLACQ 620 >gi|323474617|gb|ADX85223.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus REY15A] gi|323477349|gb|ADX82587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus HVE10/4] Length = 838 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 202/828 (24%), Positives = 356/828 (42%), Gaps = 116/828 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 K+K++ DG + F +++ + D + ++++ N+ D + + + Sbjct: 12 KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + K P ++ R++L ++ V Sbjct: 68 ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320 DF+ E+D Y L++L RY L IE PQ Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142 Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA LA E + ++ +FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 143 FRRVARFLASVERKYDKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202 Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+ Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + + + QGGKR+GA + WH D+E+F+ + D + + N + D Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531 FM+ V + L +P + + A + + Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381 Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E V R ++A +L+ +++ +++G P + F D N R P ++ Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSINL D+D LA I VR L Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI + Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFP-------IDSIGLLAEVRDELAMNRT--SR 743 HA AS+E+A+E+G + ++ L+ + + + D + + + Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVTDKPSDYVKKLTSVVDK 617 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F ++ Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R +S Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784 Score = 52.5 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++VIKR+G V F KI + K S ++ + Sbjct: 7 STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122 + + I D VE +L+++ ++ + YVL R Sbjct: 53 VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92 >gi|189425377|ref|YP_001952554.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter lovleyi SZ] gi|189421636|gb|ACD96034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter lovleyi SZ] Length = 745 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 179/661 (27%), Positives = 295/661 (44%), Gaps = 79/661 (11%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345 L +L RY G +E P F RVA +A + + +K+A FY + Sbjct: 13 LTPNALTVLEKRYLKRDTSGKPLETPADMFRRVAETIAEPDKKFDKKADVKKLADRFYEM 72 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + SF F+ ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G ++ Sbjct: 73 IVSFDFLPNSPTLMNAGRELGQLSACFVLPVGDSIEEIFDAVKFTAMIHKSGGGTGFSFS 132 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G I F++V + + QGG R+GA L H ++ +F+ Sbjct: 133 RLRPANDLVKTTTGVSSGPISFMRVFDTATETIKQGGTRRGANMGILRVDHPNIMDFIMC 192 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D++ ++ N + + + FM+ V ++ + L +P + Sbjct: 193 KA----DQKLFNNFNISVGLTEKFMEAVERDEEYDLLNPRD------------------- 229 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 ++A ++++++ +E G P I F D N +P HVG + S+N C Sbjct: 230 --------KSKMGTLNARKVFQRIVNQAWENGEPGIIFLDRLNRDNPTPHVGEIESTNPC 281 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + D+ +L I AV LDNVI+ N + +++ Sbjct: 282 GEQPLLPY----ESCNLGSINLGRFVSEGAIDWSRLKGVIHDAVHFLDNVIEANKYPLQQ 337 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 H++R IGLG+MG+ L LL IPY S EAV++ + M+FI+ +AS EL Q+R Sbjct: 338 IHDMTHSNRKIGLGVMGWADMLILLGIPYNSDEAVKLGKKVMQFINDEGHAASRELGQKR 397 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G++ +F GS D G L + RN+ Sbjct: 398 GSFPNFTGS-------TFDKKGALPQ---------------------------RNATVTT 423 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ I S ++P + YVK+ M G VN K+R + ++ + Sbjct: 424 IAPTGTISMIANASSGVEPLFAISYVKNVMDGTKLVEVNPTFEQLAKERGFYSAELMEKI 483 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 H GS+ +++ +P D++++ TA +I P I+ + Q D A S + + + Sbjct: 484 AEH-GSVHDLDEVPADVRRVFVTAHDITPEDHIQMQAAFQYHTDNAVSKTVNFPNTATIE 542 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 ++ +Y A+ G K R S ST + + A T+ + P + Sbjct: 543 DVENVYMLAYKTGCKGVTIYRDGSRDEQVLSTTRKEEKAAVAAIGTEDDKHAIKRERPKA 602 Query: 944 C 944 Sbjct: 603 L 603 >gi|227830253|ref|YP_002832033.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.S.2.15] gi|229579068|ref|YP_002837466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.G.57.14] gi|284997676|ref|YP_003419443.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.D.8.5] gi|227456701|gb|ACP35388.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.S.2.15] gi|228009782|gb|ACP45544.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.G.57.14] gi|284445571|gb|ADB87073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus L.D.8.5] Length = 838 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 202/828 (24%), Positives = 355/828 (42%), Gaps = 116/828 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 K+K++ DG + F +++ + D + ++++ N+ D + + + Sbjct: 12 KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + K P ++ R++L ++ V Sbjct: 68 ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320 DF+ E+D Y L++L RY L IE PQ Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142 Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA LA E + ++ +FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202 Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+ Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + + + QGGKR+GA + WH D+E+F+ + D + + N + D Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531 FM+ V + L +P + + A + + Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381 Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E V R ++A +L+ +++ +++G P + F D N R P ++ Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSINL D+D LA I VR L Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI + Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557 Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743 HA AS+E+A+E+G + ++ L+ + I + + + + Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTSVVDK 617 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F ++ Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R +S Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784 Score = 52.9 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++VIKR+G V F KI + K S ++ + Sbjct: 7 STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122 + + I D VE +L+++ ++ + YVL R Sbjct: 53 VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92 >gi|94495784|ref|ZP_01302363.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58] gi|94424476|gb|EAT09498.1| Ribonucleoside-diphosphate reductase [Sphingomonas sp. SKA58] Length = 626 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 202/678 (29%), Positives = 300/678 (44%), Gaps = 97/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G + L DRY L E Q F RVA + + A Y+ Sbjct: 37 DASRDALLTEFGKETLNDRYLL-----PGESYQDLFARVAAAYS----DDADHAQRVYDY 87 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT SC+L +V D L GI EN LA GG+G W Sbjct: 88 ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 147 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 148 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 206 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V A + L SP + Sbjct: 207 RKTSGDFNRKALNLHHGVLLTDEFMEAVRDGADFNLRSPKDQ------------------ 248 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V ++A AL++K++ + TG P+I F D N P+ H V +S Sbjct: 249 ---------SVRGTVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRELGLKVSTS 299 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + ++ + +R LDNV ID Sbjct: 300 NLCSEITLPTGRDHLGNDRTAVCCLSSMNLETWDEWKDHPTFAEDIMRFLDNVLQDYIDR 359 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++GLG+MGF S L +IP+ A + I+ AS Sbjct: 360 APPEMARAKYSAMRERSVGLGVMGFHSFLQARNIPFEGAMAKSWNLRIFKQINAKVNEAS 419 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LAQERG D + V Sbjct: 420 MLLAQERGPCP-------------------------------------DAADQGVME--- 439 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S MAIAPTA+I+ ICG S I+P N+Y +SG F V N +L L + Sbjct: 440 RFSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKAKDS 499 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 A+ + + GS+ +++ + + K + T+FEID WL+E A+ R +IDQAQSLNL++ Sbjct: 500 TAVWNSILERGGSVQHLDFLTQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLNLFI 559 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ +AW +G+K+ YYLRS+S A V N+ Sbjct: 560 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSVQRA-----------GFAGGVEADNTIDA 608 Query: 937 SLGIPSSCTSDTECEVCQ 954 + T+ EC CQ Sbjct: 609 PRFEIAETTNYDECLACQ 626 >gi|327401108|ref|YP_004341947.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Archaeoglobus veneficus SNP6] gi|327316616|gb|AEA47232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Archaeoglobus veneficus SNP6] Length = 749 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 177/665 (26%), Positives = 290/665 (43%), Gaps = 79/665 (11%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNL 345 +L RY L G+ IE P+ RVA +A E + EK A +F+ + Sbjct: 1 MELTKTAEVVLKKRYLLKDEEGNVIETPEQMLWRVANAIAQPEEKYGGDVEKTAKQFFEM 60 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + + FM ++PTL N+GT QLS+CF+ V D + GIF AL + A + K GG G ++ Sbjct: 61 MDNQLFMPNSPTLMNAGTELNQLSACFVIPVDDSIDGIFKALWDMAKVQKSGGGTGFSFS 120 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + T G + G + F+K+ + + QGGKR+GA L H D+E+F+ Sbjct: 121 RLRPKGDIVKSTMGVASGPVSFMKIFDAATEQIKQGGKRRGANMGVLNVHHPDIEDFITA 180 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + + + N + + D FM+ + +A + +P Sbjct: 181 KW----EEGVLRNFNISVAVTDAFMEALKNDAEYEQINPRT------------------- 217 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V RK+ A ++ ++ + G P + F D N +P H+G++ ++N C Sbjct: 218 --------GEVVRKVPARKIFNLIVEGAWRNGEPGVVFIDTINRHNPTPHIGMIEATNPC 269 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSIN+ N D+D L + AVR LDNVID+N + + + Sbjct: 270 GEQPLLPY----ESCNLGSINVSKFVKNGDIDWDWLREIVWLAVRFLDNVIDVNNYPLPE 325 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 +K +R IGLG+MGF L L IPY S E + +A++ M FI + AS LA+ER Sbjct: 326 IEKMTLANRKIGLGVMGFADLLFKLKIPYDSEEGIALAEKLMSFIQEESHKASQALAEER 385 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G + ++KGS W + + M + Sbjct: 386 GVFPNWKGSTW---------------EKKGIKMRNATTTTIAPTGTI------------- 417 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKS-NMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823 + I G S I+P Y + + + G+ F +N + L+Q L+ + +I+ Sbjct: 418 -------SIIAGCSSGIEPVYALAFKRMHILDGEEFFEINPIFEDTLRQLGLYSDELIAK 470 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + +GSI +I IP ++K+I A +I P W + + QK+ D A S + + + Sbjct: 471 VAE-EGSIQDIPEIPKEIKRIFKCALDIAPEWHVRMQAAFQKYTDNAVSKTINMPNHATR 529 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 K ++ + A+ +G K R S T K + + T I + Sbjct: 530 KDVEKAFLLAYELGCKGITVYRDGSREEQVLKTKKAEKKEFRPIKPTGYVEPRPRPKITT 589 Query: 943 SCTSD 947 T + Sbjct: 590 GRTIE 594 >gi|229582181|ref|YP_002840580.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.N.15.51] gi|228012897|gb|ACP48658.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus Y.N.15.51] Length = 838 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 201/828 (24%), Positives = 354/828 (42%), Gaps = 116/828 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 K+K++ DG + F +++ + D + ++++ N+ D + + + Sbjct: 12 KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + K P ++ R++L ++ V Sbjct: 68 ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320 DF+ E+D Y L++L RY L IE PQ Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142 Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA LA E + ++ +FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202 Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+ Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + + + QGGKR+GA + WH D+E+F+ + D + + N + D Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531 FM+ V + L +P + + A + + Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381 Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E V R ++A +L+ +++ +++G P + F D N R P ++ Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSINL D+D LA I VR L Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI + Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557 Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743 HA AS+E+A+E+G + ++ L+ + I + + + + Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTSVVDK 617 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F ++ Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D +I + G I + +P L+K+ TA E+ P++ + + Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIDDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R +S Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784 Score = 52.5 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++VIKR+G V F KI + K S ++ + Sbjct: 7 STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122 + + I D VE +L+++ ++ + YVL R Sbjct: 53 VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92 >gi|229584769|ref|YP_002843271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus M.16.27] gi|228019819|gb|ACP55226.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus islandicus M.16.27] Length = 838 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 202/828 (24%), Positives = 354/828 (42%), Gaps = 116/828 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 K+K++ DG + F +++ + D + ++++ N+ D + + + Sbjct: 12 KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + K P ++ R++L ++ V Sbjct: 68 ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320 DF+ E+D Y L++L RY L IE PQ Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142 Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA LA E + ++ +FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202 Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+ Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + + + QGGKR+GA + WH D+E+F+ + D + + N + D Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531 FM+ V + L +P + + A + + Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381 Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E V R ++A +L+ +++ +++G P + F D N R P ++ Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSINL D+D LA I VR L Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI + Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557 Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743 HA AS+E+A+E+G + ++ L+ + I + + + Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTGVVDK 617 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F ++ Sbjct: 618 LDFDLLKDERLKYGLRNSTIVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R +S Sbjct: 737 QQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784 Score = 52.9 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++VIKR+G V F KI + K S ++ + Sbjct: 7 STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122 + + I D VE +L+++ ++ + YVL R Sbjct: 53 VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92 >gi|188578921|ref|YP_001915850.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523373|gb|ACD61318.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 832 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 236/829 (28%), Positives = 368/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RLE +++ + + + Sbjct: 45 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 104 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 105 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 156 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 157 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 216 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 217 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 276 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 277 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 336 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 337 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 396 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ + IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 397 QRLRAHDVFISVCIPDLFMEAVERRGDWYLFDPHEVKRVKGWYLQDFYDEKKGDANSSFR 456 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 457 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 516 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 517 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 576 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 577 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 636 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 637 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 682 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 683 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 742 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + D + A+++D + Sbjct: 743 PVAAP-------------------------------GLSLDTWPYYEKGAYKVDQFASVR 771 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 772 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 820 >gi|108805660|ref|YP_645597.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrobacter xylanophilus DSM 9941] gi|108766903|gb|ABG05785.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rubrobacter xylanophilus DSM 9941] Length = 747 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 177/647 (27%), Positives = 286/647 (44%), Gaps = 86/647 (13%) Query: 290 DFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE----------KEKR 338 D L +L RY + G +E P F RVA +A E + E+ Sbjct: 12 DIELTENALAVLRKRYLKKNDRGEPVERPVDMFRRVAGNIAEAELKFRDGEEGRALYEEY 71 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 F ++ S FM ++PTL N+G QLS+CF+ V D + GI+ L+ A++ K G Sbjct: 72 YGRFLQMMLSRRFMPNSPTLMNAGRELQQLSACFVLPVEDSIDGIYDTLKHQAIIHKSGG 131 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G G ++ +R + T G S G + F+ + + + + QGG R+GA L H D Sbjct: 132 GTGFAFSRLRPKNDIVQSTMGVSSGPVSFMAIYDASTDKIKQGGTRRGANMGILRVDHPD 191 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 +EEF+ + +D + + N + I D FM+ V ++ + L +P Sbjct: 192 IEEFVTCK----NDNDQITNFNISVAITDAFMEAVEKDGEFELVNPR------------- 234 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 V R++ A L++K+ + G P + F D N +P Sbjct: 235 --------------NGAVTRRVRARELFKKIAYGAWLNGEPGVVFIDRINADNPT-PQFP 279 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFDYDKLASTIRTAVRVLDNVI 636 + S+N C+E L CNLGSINL ++ D+++L T+RTAVR LDNVI Sbjct: 280 IESTNPCSEAHLPPY----DSCNLGSINLSLFYSEEAGDVDWEELRETVRTAVRFLDNVI 335 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + N + + + ++ + +R IGLG+MGF L + IPY S E + A+ M FI A Sbjct: 336 EQNNYPLPQIEEMSKGNRRIGLGVMGFADLLIKMGIPYDSEEGLAFAERVMRFIDEEAWE 395 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA ERG ++ ++GS E R + Sbjct: 396 ASRALAAERGVFAHYEGSRH--------------EARGDR-------------------- 421 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 +RN+ IAPT TI+ I G S I+P Y +++ + VN V ++R + Sbjct: 422 -VRNATVTTIAPTGTISLIAGCSGGIEPLYAVAFMRRQADMEMPDVNPEFVRVARERGFY 480 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E ++ + GS+ +E +P+D++++ T+ +I P W + + QK S + Sbjct: 481 SEELMKKVAE-QGSVRGLEEVPEDVRRVWVTSHDISPEWHVRMQAAFQKHTSMGISKTIN 539 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 L +E + + ++ YR A+ +G K R S ST K Sbjct: 540 LPNEATVEDVERAYRLAYSLGCKGIAVYRDGSREEQVLSTGKTAKQP 586 >gi|289664734|ref|ZP_06486315.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670857|ref|ZP_06491932.1| ribonucleotide-diphosphate reductase subunit alpha [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 827 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 235/829 (28%), Positives = 368/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQSHSKSDAPIAPKLK-IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + I + G I F +RL +++ + + + Sbjct: 40 RQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLNRAIDQIHAEFPQLDVADYKRSVF 99 Query: 187 --KNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 D ++ DL LI + ++ P + AR L +L + + Sbjct: 100 GFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 151 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ ++ ERD F Y GL + Sbjct: 152 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYL 211 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY + E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 212 LATRYLATDSSRGVFELPQERWLTIALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYM 271 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 272 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 331 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 332 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGD 391 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 392 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 451 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 452 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 511 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 512 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAITVQADQADLLGAD 571 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 572 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNAKEA 631 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ I AS+ELA+E+G YS F+GS W G + Sbjct: 632 EDYSDELYERINYLTIQASMELAKEKGTYSVFRGSDWHNG--------------EYFRAR 677 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 678 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 737 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + + + A+++D + Sbjct: 738 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 766 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ +DQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 767 QNARRQRHVDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 815 >gi|172036269|ref|YP_001802770.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp. ATCC 51142] gi|171697723|gb|ACB50704.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanothece sp. ATCC 51142] Length = 769 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 218/786 (27%), Positives = 363/786 (46%), Gaps = 86/786 (10%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 K+++ DG+ + N ++ +V AC+ +DV+S + + + DG++ +++ Sbjct: 30 ESKIRVRRRDGSWTALNIGKIRAVVNWACAE-KDVNSIALEAGLTTRLRDGITTREIQDN 88 Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI + + EP++ V R + L ++ L Y + Sbjct: 89 LINCALEMCSPTEPDWRYVAGRLHIWSLWKDTL---------VNRGYQYGNYETTVETKV 139 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 E G L +L + + + D ++Y G +L RY L E+PQ Sbjct: 140 EAGQYDNRLLT-YSTTELREAGSWINPDWDTDYDYAGAVLLTSRYLL-----PQELPQEA 193 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 + A+ LA E + A +FY ++S +TP L N L+SCF+ ++ D Sbjct: 194 LLSCALLLATVESPENRLPWARQFYEAIASRKVSLATPILANLRVPGGSLTSCFILSIDD 253 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 +L IF + A ++K GG+G + + +R G+ + G N S G+IP++K+ NDTA+AV Sbjct: 254 NLESIFEEITNTARISKNGGGVGVNVSRIRATGSWVMGKNNASGGIIPWIKLLNDTAIAV 313 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGG+R GAV ++ WH+DV EFL+++ GD RR+ +D+ + D FM+RV Sbjct: 314 NQGGRRAGAVTVGVDIWHLDVPEFLEIQTENGDQRRKAYDVFPQLILTDEFMRRVENKEQ 373 Query: 499 WTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +L+G++FE AY E + DR EI ++++++A L++ ++ Sbjct: 374 WTLVDPYEIREKLGIELAELWGEKFEAAYRLIEAELDR-EITLYKRVNARELFKTIMRSQ 432 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-SSSEETAVCNLGSINLLAHFA 612 ETG P++ FKD N +P +HVG + NLCTE N + +E CNL S+NL Sbjct: 433 VETGMPYLAFKDTINKANPNKHVGYIPGVNLCTESFSNVTPGKEAHCCNLVSLNLANIEE 492 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 +L + AVR+LDN IDI E AK N +R IG+G MG L + Sbjct: 493 Y------ELNYLCKIAVRILDNTIDITNPPFEDAKAHNDRYRTIGVGCMGLADWLAKKEL 546 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y E + E + + S+ELA+ER Y +F+GS W++G+ + ++ Sbjct: 547 TY---ENLTEISNLFEEVGYWCTHTSMELAKERSPYDAFEGSDWNKGLL------IGSKP 597 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + N + W +L + +KT G+RNS+ AIAP + + + G + SI P Y + Sbjct: 598 VNWFVENAHKKERWIQLSEDIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYD 657 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G + + + W + +D Sbjct: 658 KWAKGTVP-IAPPFIKD----SFW---------------------------FYHENKTLD 685 Query: 853 PMWLIESASRRQKWIDQAQSL----NLYL-----DEP----SGKKLDFIYRQAWLMGLKT 899 ++++ S Q+WID S+ NL +EP + K + AW G K Sbjct: 686 QQKVVKAVSTIQQWIDTGISMELLFNLNQGIYFPNEPERCLTAKDIFETLLLAWKEGCKA 745 Query: 900 TYYLRS 905 YY+R+ Sbjct: 746 IYYVRT 751 >gi|325919222|ref|ZP_08181269.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325923020|ref|ZP_08184720.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325546490|gb|EGD17644.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] gi|325550296|gb|EGD21103.1| ribonucleoside-diphosphate reductase, alpha subunit [Xanthomonas gardneri ATCC 19865] Length = 833 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 238/829 (28%), Positives = 373/829 (44%), Gaps = 104/829 (12%) Query: 129 RAAQS-HSKSDAPIAPKLKIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY 186 R A + H+++ I + G I F +RLE +++ + + + Sbjct: 46 RQAIAMHAQTIEEQTVSTWITKEAGNRKIPFEPERLERAIDQIHAEFPQLDVADYKRSVF 105 Query: 187 KNM--YDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 + D ++ DL LI + ++ P + AR L +L + + Sbjct: 106 GFVDRKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRA--------SRN 157 Query: 244 THHEMQCLYPEYF---CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300 ++ Y + + V + + +L+ + ERD F Y GL + Sbjct: 158 RFYDASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIAPERDTLFAYNGLYL 217 Query: 301 LYDRYFLHINGS-RIEMPQAFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHF 351 L RY N E+PQ ++ +A+ L E + + E Y LS+ + Sbjct: 218 LATRYLATDNSRGVFELPQERWLTIALYLMQDEIGNGKGSRERRMQLVGEAYWALSNLYM 277 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ GG+G VR G Sbjct: 278 TVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSG 337 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + I G + S GV+P++K N+TAV+V+Q G+RKGA+ YL+ +H D+E FLDLR N GD Sbjct: 338 SAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIESFLDLRLNNGD 397 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YE 523 R R HD+ T+ IPDLFM+ V + W LF P EV + Y ++F E + Sbjct: 398 QRLRAHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFYDEKKGDANSSFR 457 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + E + + A+ ++++++ ETG+P++ ++D N ++P +H G+V+SSN Sbjct: 458 RKYEEVVADERITRKTVKAIEIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSN 517 Query: 584 LCTEITLNSSSE-------------------ETAVCNLGSINLLAHFANNQFDYDK---- 620 LCTEI N S + VCNL SINL D Sbjct: 518 LCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGRAIIAQDDQADLLGAD 577 Query: 621 -LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 L I VR+LDNVID+N + +A +N +RAIGLG G+ L I + + EA Sbjct: 578 VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEA 637 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + +DE E I++ + AS+ELA+E+G YS F+GS W G + Sbjct: 638 EDYSDELYERINYLTVQASMELAKEKGTYSVFRGSDWHTG--------------EYFRAR 683 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W EL +V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 684 DYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDFRR 743 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIE 858 V + + + A+++D + Sbjct: 744 PVAAP-------------------------------GLSLETWPYYEKGAYKVDQFASVR 772 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +RRQ+ IDQ+ S N Y+ L ++ AW GLKTTYY+RS Sbjct: 773 QNARRQRHIDQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSN 821 >gi|284175618|ref|ZP_06389587.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus 98/2] gi|261602517|gb|ACX92120.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sulfolobus solfataricus 98/2] Length = 838 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 209/830 (25%), Positives = 361/830 (43%), Gaps = 120/830 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +++ + D + ++++ N+ D ++ + ++ Sbjct: 12 KIKVIKRDGKVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRVIADIV 67 Query: 204 FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 R LIE Y + R++L ++ V Sbjct: 68 E--RNLIENSLKYPFLMELAKRYVLARIYNHVFGK------------------------- 100 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQ 318 DFD E+D Y L++L RY L IE PQ Sbjct: 101 ----------GKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQ 140 Query: 319 AFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 F RVA LA E + ++ +FY ++S F+ ++PTL NS TR LS+C Sbjct: 141 MLFRRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSAC 200 Query: 372 FLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 F+ V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + Sbjct: 201 FVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVS 260 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 F+KV + + + QGGKR+GA + WH D+E+F+ + D + + N + Sbjct: 261 FMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAY 319 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR--------------- 531 D FM V + L +P + + A + + Sbjct: 320 DYFMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVS 379 Query: 532 -----------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 E V + ++A +L+ +++ +++G P + F D N R P Sbjct: 380 LDESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVW 439 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVR 630 ++G ++++N C E L CNLGSINL D+D LA IR VR Sbjct: 440 YLGKINATNPCGEEPLLP----WESCNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVR 495 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI Sbjct: 496 FLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFI 555 Query: 691 SFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLL------AEVRDELAMNRT-- 741 +HA AS+E+A+E+G + ++ L+ D +D LL + D + + Sbjct: 556 FYHAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVV 615 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 +L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F Sbjct: 616 DKLDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIE 675 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 ++ + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 676 IDPLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQA 734 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R +S Sbjct: 735 AWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784 Score = 52.9 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 24/105 (22%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++VIKR+G V F KI + K S ++ + Sbjct: 7 STSLRKIKVIKRDGKVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122 + + + I D VE +L+++ ++ + YVL R Sbjct: 53 VKDNAIDTRV-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92 >gi|227827566|ref|YP_002829346.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent [Sulfolobus islandicus M.14.25] gi|238619723|ref|YP_002914549.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent [Sulfolobus islandicus M.16.4] gi|227459362|gb|ACP38048.1| ribonucleoside-diphosphate reductase,adenosylcobalamin-dependent [Sulfolobus islandicus M.14.25] gi|238380793|gb|ACR41881.1| ribonucleoside-diphosphate reductase,adenosyl cobalamin-dependent [Sulfolobus islandicus M.16.4] Length = 838 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 202/828 (24%), Positives = 355/828 (42%), Gaps = 116/828 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 K+K++ DG + F +++ + D + ++++ N+ D + + + Sbjct: 12 KIKVIKRDGRVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRAIADIV 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + K P ++ R++L ++ V Sbjct: 68 ERNLIENSLKYPFLMELAKRYVLARIYNHVFGK--------------------------- 100 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320 DF+ E+D Y L++L RY L IE PQ Sbjct: 101 --------GKWKDFN----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQML 142 Query: 321 FMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA LA E + ++ +FY ++SS F+ ++PTL NS TR LS+CF+ Sbjct: 143 FRRVARFLASVERKYGKSEAEVKQLEEKFYEMISSLKFVPNSPTLMNSETRLGILSACFV 202 Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+ Sbjct: 203 IPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVSFM 262 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 KV + + + QGGKR+GA + WH D+E+F+ + D + + N + D Sbjct: 263 KVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR----------------- 531 FM+ V + L +P + + A + + Sbjct: 322 FMEAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMNEEWIQEVIISELEEKGGVVSLD 381 Query: 532 ---------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E V R ++A +L+ +++ +++G P + F D N R P ++ Sbjct: 382 ESKVITVDEALIIASKEGAVVRYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVWYL 441 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSINL D+D LA I VR L Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSINLEKFIIERNGKVEIDWDGLAEIISYGVRFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI + Sbjct: 498 DNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFIFY 557 Query: 693 HAISASVELAQERGAYSSFKGSLW---------DQGVFPIDSIGLLAEVRDELAMNRTSR 743 HA AS+E+A+E+G + ++ L+ + I + + + + Sbjct: 558 HAYKASIEVAKEKGPFPTYDSKLYRDIWESALDFNSLLQIAEVADKPSDYVKKLTSVVDK 617 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F ++ Sbjct: 618 LDFDLLKDERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 678 PLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVLHQAAW 736 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R +S Sbjct: 737 QQWNDSGTSKTINLRFEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 784 Score = 52.9 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++VIKR+G V F KI + K S ++ + Sbjct: 7 STSLRKIKVIKRDGRVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 52 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122 + + I D VE +L+++ ++ + YVL R Sbjct: 53 VKDNAIDTRA-----IADIVERNLIENSLKYPFLMELAKRYVLAR 92 >gi|71276517|ref|ZP_00652792.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71900742|ref|ZP_00682864.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|170729740|ref|YP_001775173.1| ribonucleotide-diphosphate reductase subunit alpha [Xylella fastidiosa M12] gi|71162694|gb|EAO12421.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71729512|gb|EAO31621.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|167964533|gb|ACA11543.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12] Length = 830 Score = 416 bits (1069), Expect = e-113, Method: Composition-based stats. Identities = 235/807 (29%), Positives = 361/807 (44%), Gaps = 100/807 (12%) Query: 147 IMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETY--KNMYDGLSESDLETALI 203 I + G + F+ RLE ++ + + D ++ DL LI Sbjct: 65 ITKEAGNRRMPFDCARLECAIDTIHQEFPQLDVAEYKRAVFGFVERKDSVNADDLVDLLI 124 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF---CRY 259 + ++ P + AR L +L + + ++ Y + Sbjct: 125 REAEARVDLTAPEWEYFAARLYLRRLYKRA--------SRNRFYDASQKYGSFVGLQESL 176 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQ 318 + + + + S +L+ + ERD F Y GL +L RY E+PQ Sbjct: 177 ADRNIYSNDILRSYSKEELIEAGQMIDPERDKLFTYNGLYLLATRYLATDASRGVFELPQ 236 Query: 319 AFFMRVAMGLALKE--------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 ++ +A+ L E + + E Y LS+ + +TPTL N+G + QLSS Sbjct: 237 ERWLTIALYLMQDEYGPGKGGRERRMQLVGEAYWALSNLYMTVATPTLGNAGKINGQLSS 296 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF+ TV D L GI+ + + A ++K+ GG+G VR G+ I G S GV+P++K Sbjct: 297 CFIDTVDDSLQGIYDSNTDIARVSKHGGGVGAYLGYVRSSGSMIRGVANSSGGVVPWIKQ 356 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 N+TAV+V+Q G+RKGA+ YL+ WH D+E FLDLR N GD R R HD+ T+ IPDLFM Sbjct: 357 LNNTAVSVDQLGQRKGAIAVYLDIWHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFM 416 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF--EIA------YENYERQADRGEIKVFRKISA 542 + V + W LF P EV + Y ++F E + E + + A Sbjct: 417 EAVERRGDWYLFDPYEVKRVKGWYLQDFYDEKRGDPNGSFRRKYEDVVADERISRKTVKA 476 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS---------- 592 + ++++++ ETG+P++ ++D N ++P +HVG+V+SSNLCTEI N Sbjct: 477 IDIFKRIMVSQLETGNPFMFYRDEVNRKNPNKHVGMVYSSNLCTEILQNMTPTRLIQEMI 536 Query: 593 ---------SSEETAVCNLGSINLLAHFANNQFDY--DKLASTIRTAVRVLDNVIDINCH 641 + + VCNL SINL D L I VR+LDNVID+N Sbjct: 537 SGNQIVTTKHAGDFVVCNLSSINLGRAITVQADLLGADVLERLIPIQVRMLDNVIDLNLL 596 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +A +N +RAIGLG G+ L I + S EA + +D E I++ I AS+EL Sbjct: 597 PVPQATITNQKYRAIGLGTFGWHHLLAQKAIHWNSQEAEQYSDVLYERINYLTIRASMEL 656 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+G Y+ F GS W G + + W EL +V G+RN+ Sbjct: 657 AKEKGTYAVFPGSDWQTG--------------EYFRARDYNSPQWLELAAQVAVNGVRNA 702 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +A+AP + A I G + SIDP Y Y + V Sbjct: 703 YMVAVAPNMSTAQIAGSTASIDPVYSAFYYEEKKDYRRPVAAP----------------- 745 Query: 822 SDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + D + A+++D I +RRQ+ +DQ+ S N Y+ Sbjct: 746 --------------GLSLDTWPYYEKGAYKLDQFASIRQNARRQRHVDQSLSFNFYVPST 791 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 L ++ AW GLKTTYY+RS Sbjct: 792 IRASTLLDLHMTAWREGLKTTYYVRSN 818 >gi|103487258|ref|YP_616819.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingopyxis alaskensis RB2256] gi|98977335|gb|ABF53486.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis RB2256] Length = 676 Score = 416 bits (1069), Expect = e-113, Method: Composition-based stats. Identities = 198/678 (29%), Positives = 299/678 (44%), Gaps = 98/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G + L DRY L E Q F RVA A + + A Y+ Sbjct: 88 DASRDALLTDFGKETLQDRYLL-----PGESYQDLFARVADAYA----DDQDHAQRLYDY 138 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT SC+L +V D L GI G EN LA GG+G W Sbjct: 139 ISKLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVGTWNENVWLASRGGGIGTYWG 198 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 199 AVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 257 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ I D FM+ V + L SP + Sbjct: 258 RKPSGDFNRKALNLHHGVLITDEFMEAVRDGTEFNLRSPKDN------------------ 299 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V + A +L++K++ TG P+I F D N P+ H V +S Sbjct: 300 ---------SVRGTVDARSLFQKLVETRLATGEPYIIFIDQVNRMMPKHHRDLGLKVTTS 350 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + +++ I +R+LDNV ID Sbjct: 351 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLETWDEWNGDKRFIEDVMRMLDNVLQDYIDR 410 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++GLG+MGF S L +P+ A + I AS Sbjct: 411 APPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSSNLRIFKHIRAQVDQAS 470 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LA+ERG D + V Sbjct: 471 MLLAKERGPCP-------------------------------------DAADQGVME--- 490 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S MAIAPTA+I+ ICG S I+P N+Y +SG F++ N L L + Sbjct: 491 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFSIRNPHLEALLVDKAKNS 550 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 +A+ + + GS+ +++ + D K + T+FEID WL+E A+ R +IDQA SLNL++ Sbjct: 551 DAVWNSILERGGSVQHLDFLTQDEKDVFKTSFEIDQRWLLELAADRTPYIDQAASLNLFI 610 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ +AW +G+K+ YYLRS+S + +++ Sbjct: 611 PADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRA------------GFAGGVEADNTPE 658 Query: 937 SLGIPSSCTSDTECEVCQ 954 + + T EC CQ Sbjct: 659 AAKFELATTDYDECLACQ 676 >gi|332797062|ref|YP_004458562.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidianus hospitalis W1] gi|332694797|gb|AEE94264.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidianus hospitalis W1] Length = 841 Score = 416 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 205/831 (24%), Positives = 368/831 (44%), Gaps = 120/831 (14%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 K+K++ DG F +++ + + S + D + ++ + N D + +D+ Sbjct: 15 NKIKVIKRDGRKEEFKLEKILVKIGFVPSEVIDGIANDIIQNSKDNTIDTRTIADIVE-- 72 Query: 203 IFSSRTLIE---KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 R LIE + P + +++L ++ V Sbjct: 73 ----RNLIENSLEHPELMDLAKKYVLARIYNHVYGK------------------------ 104 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMP 317 DFD +D Y L++L RY L IE P Sbjct: 105 -----------GKWKDFD----------PKDLLLTYNALKVLEARYLLKDPNTLRYIETP 143 Query: 318 QAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 Q F RVA LA E + + +FY+++S+ F+ +TPTL NSGTR LS+ Sbjct: 144 QMMFRRVAKYLASVELKYGKSESEVKALEEKFYDIMSNLRFLPNTPTLMNSGTRLGILSA 203 Query: 371 CFLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 CF+ V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + Sbjct: 204 CFVIPVRDSMTTPEGDGIYDALRAMALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPV 263 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 F+K+ + + V QGGKR+GA + WH ++E+F++ + D + + N + + Sbjct: 264 SFMKIFDVSTDVVKQGGKRRGANMGVMHVWHAEIEDFINSKSGKLKDV-QLQNFNISVGV 322 Query: 486 PDLFMKRVTQNAGWTLFSPD--EVSDLHDLYGKEFEIAYENYERQ--------------- 528 D FM++V + L +P + Y Y + E Sbjct: 323 YDYFMEKVERGEEVPLITPRKTRIPGTDHDYYINKARNYMSEEWVQEEILNELEEKGGAV 382 Query: 529 ---------------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 E + R I+A +L+ +++ +++G P + F D N R P Sbjct: 383 WLDESKIITVDEALVIAEKEGAIIRWINARSLFNEIVRSAWDSGDPGLLFIDEINRRHPV 442 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAV 629 ++G ++++N C E L CNLGSINL D+D LA TI+ AV Sbjct: 443 WYLGKINATNPCGEEPLLP----WESCNLGSINLEKFVKETENGKYIDWDGLAETIKYAV 498 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNVID N + +++ +++ + R +GLG+MG L L IPY S +A+ ++ + +F Sbjct: 499 RLLDNVIDANKYPLKQIEQATKSTRKVGLGVMGLARMLIKLGIPYDSVDAIYLSYQVAKF 558 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL-----AEVRDELAMNR---- 740 I +HA S+ELA+E+G++ + + L E + + + Sbjct: 559 IYYHAFKTSIELAKEKGSFPVYDPLRYHDIWESARPFEYLLEVTKVEGKPSEYVRKLTAI 618 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 ++ + ELK G+RN+ +++APT TI+ I G S SI+P + ++++ G F Sbjct: 619 VDKIDFSELKAERIKHGLRNATVVSVAPTGTISIIAGTSSSIEPLFALAFIRNVAVGKFM 678 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 ++S + L++ +L + ++ + G++G +P ++K+ TA E+ P + + Sbjct: 679 EIDSLFLEYLRKYELDNPEVVKKVAET-GTVGENMFMPATIRKLFRTAHEVPPEYHLLHQ 737 Query: 861 SRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + Q+W D S + L E + ++ +Y AW +G+K R +S + Sbjct: 738 AAWQQWNDSGTSKTINLRSEEPPETVERVYLMAWKLGVKGITVYRDKSKSQ 788 Score = 51.0 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 24/103 (23%) Query: 25 KIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLL 84 + ++VIKR+G F KI I ++I + + Sbjct: 13 SLNKIKVIKRDGRKEEFKLEKILVKI--------------GFVPSEVIDGIANDIIQNSK 58 Query: 85 QHNKSALIVHIEDIQDQVECSLMQS-----GHHKITREYVLYR 122 + I D VE +L+++ + ++YVL R Sbjct: 59 DNTIDTRT-----IADIVERNLIENSLEHPELMDLAKKYVLAR 96 >gi|15897814|ref|NP_342419.1| ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2] gi|13814111|gb|AAK41209.1| Ribonucleotide reductase (nrd) [Sulfolobus solfataricus P2] Length = 841 Score = 416 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 209/830 (25%), Positives = 361/830 (43%), Gaps = 120/830 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 K+K++ DG + F +++ + D + ++++ N+ D ++ + ++ Sbjct: 15 KIKVIKRDGKVDEFKLEKILSKLSSV----PDEVTDGIVNDVQANVKDNAIDTRVIADIV 70 Query: 204 FSSRTLIEKEPNYAKV---TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 R LIE Y + R++L ++ V Sbjct: 71 E--RNLIENSLKYPFLMELAKRYVLARIYNHVFGK------------------------- 103 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQ 318 DFD E+D Y L++L RY L IE PQ Sbjct: 104 ----------GKWKDFD----------EKDLLLSYNALKVLEARYLLKDPNTLRYIETPQ 143 Query: 319 AFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 F RVA LA E + ++ +FY ++S F+ ++PTL NS TR LS+C Sbjct: 144 MLFRRVARFLASVERKYGKSEAEVKQLEDKFYEMISDLKFVPNSPTLMNSETRLGILSAC 203 Query: 372 FLTTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 F+ V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + Sbjct: 204 FVIPVKDAMTTPEGDGIYDALRATALVHQQGGGTGFDFSELRPKGDVVASTAGVASGPVS 263 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 F+KV + + + QGGKR+GA + WH D+E+F+ + D + + N + Sbjct: 264 FMKVFDASTDVIKQGGKRRGANMGVMHAWHADIEDFIRAKTGQLKDV-QLQNFNISVGAY 322 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR--------------- 531 D FM V + L +P + + A + + Sbjct: 323 DYFMDAVVKGESVPLINPRKTKIAGRDHEYYITKARGYMSEEWIQEVILSELEEKGGVVS 382 Query: 532 -----------------GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 E V + ++A +L+ +++ +++G P + F D N R P Sbjct: 383 LDESKIITVDEALVIASKEGAVVKYVNAKSLFDEIVKGAWDSGDPGLLFIDTINRRHPVW 442 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVR 630 ++G ++++N C E L CNLGSINL D+D LA IR VR Sbjct: 443 YLGKINATNPCGEEPLLP----WESCNLGSINLEKFVIERDGKAAIDWDGLAEIIRYGVR 498 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID N + +++ + + R +GLG+MG L I Y S +A+ ++ + +FI Sbjct: 499 FLDNVIDANRYPLKQIEDATKRTRKVGLGVMGLARMFIKLGIAYDSVDAIYLSYQLAKFI 558 Query: 691 SFHAISASVELAQERGAYSSFKGSLW-DQGVFPIDSIGLL------AEVRDELAMNRT-- 741 +HA AS+E+A+E+G + ++ L+ D +D LL + D + + Sbjct: 559 FYHAYKASIEIAKEKGTFPTYDARLYRDIWESALDFDSLLQTAEISDKPSDYVKKLTSVV 618 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 +L +D LK G+RNS ++IAPT TI+ I G S SI+P + +V++ G F Sbjct: 619 DKLDFDLLKGERLKYGLRNSTVVSIAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIE 678 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 ++ + L++ +L D +I + G IG+ +P L+K+ TA E+ P++ + + Sbjct: 679 IDPLFLEYLRKYELDDPEVIQKIAES-GIIGDNVFMPRSLRKLFRTAHEVPPIYHVMHQA 737 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R +S Sbjct: 738 AWQQWNDSGTSKTINLRSEEPPETVEKVYLLAWKLGIKGITVYRDKSKQQ 787 Score = 52.9 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 24/105 (22%) Query: 23 PEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTR 82 ++ ++VIKR+G V F KI + K S ++ + Sbjct: 10 STSLRKIKVIKRDGKVDEFKLEKI---LSK-----------LSSVPDEVTDGIVNDVQAN 55 Query: 83 LLQHNKSALIVHIEDIQDQVECSLMQSGHH-----KITREYVLYR 122 + + + I D VE +L+++ ++ + YVL R Sbjct: 56 VKDNAIDTRV-----IADIVERNLIENSLKYPFLMELAKRYVLAR 95 >gi|114327551|ref|YP_744708.1| ribonucleotide-diphosphate reductase subunit alpha [Granulibacter bethesdensis CGDNIH1] gi|114315725|gb|ABI61785.1| ribonucleoside-diphosphate reductase alpha chain [Granulibacter bethesdensis CGDNIH1] Length = 650 Score = 416 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 205/681 (30%), Positives = 298/681 (43%), Gaps = 100/681 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY + E Q F RV+ A Y+ Sbjct: 58 DDSRDALLTDFGKATLNDRYLM-----PGESYQDLFARVSSYYGDNAE----HAQRIYDY 108 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT+ SCFL D L GI G EN LA GG+G+ W Sbjct: 109 MSRLWFMPATPVLSNGGTKRGLPISCFLNEASDSLEGIVGLWNENVWLASKGGGIGSYWG 168 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R +G + NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++L Sbjct: 169 NLRSIGEKVGQ-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFVEL 227 Query: 466 RKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 228 RRPTGGDPNRKALNLHHGVLLSDAFMRAVDHDEEWALLSPKD------------------ 269 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V RKISA ALW ++LT E G P+I F D N P+ V + Sbjct: 270 ---------KSVIRKISARALWIRILTARMEQGEPYIVFSDHVNRALPEHQKLAGLEVKT 320 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EITL + ++ L + + + I + LDNV ID Sbjct: 321 SNLCSEITLPTGIDQHGKQRTAVCCLSSLNLETWHAWKDHPTFIEDVMLFLDNVLQDFID 380 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 T+E+A+ S R++GLG+MGF S L +P+ S A + I A A Sbjct: 381 RAPDTMERARYSAMRERSVGLGVMGFHSFLQAERVPFESVVAKVWNLRMFKHIRAQADKA 440 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S LA ERGA G Sbjct: 441 SRMLAAERGACP------------------------------------------DAADYG 458 Query: 758 MR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 + SN MAIAPTA+I+ I G S I+P N++++ +SG FTV N L L +R Sbjct: 459 LNERFSNKMAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLQQLLAERG 518 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 +E + S + + GS+ +++ + + K + TAFE+D W+IE A+ R +I Q+QS+N Sbjct: 519 QDNEDVWSSITLNKGSVQHLDFLTEAEKAVFKTAFELDQRWIIEHAADRTPYICQSQSVN 578 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 L+L + L ++ AW GLK+ YY RS S ++ V + Sbjct: 579 LFLPANVHKRDLHQVHMLAWKRGLKSLYYCRSLSIQRA---------DAVSEKAVNLDHQ 629 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 + + S T+ EC CQ Sbjct: 630 AKAAPAAAVSTTNYEECLSCQ 650 >gi|241761976|ref|ZP_04760061.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373656|gb|EER63228.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 613 Score = 416 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 196/678 (28%), Positives = 297/678 (43%), Gaps = 98/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY L E Q F RVA A + E A Y+ Sbjct: 25 DPSRDALLTAFGKATLDDRYLL-----PGESYQDLFARVADAYA----DDEAHAQRLYDY 75 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT+ SC+L VPD L GI EN LA GG+G W Sbjct: 76 ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWG 135 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++ Sbjct: 136 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V + L SP + Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRD------------------- 235 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 ++ A +L++K++ +TG P+I F D N P+ H V SS Sbjct: 236 --------GTKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + + I +R LDNV ID Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQWHDNKRFIEDVMRFLDNVLQSYIDN 347 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + A+ + R++GLG+MGF S L IP+ A + I+ A AS Sbjct: 348 APDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANEAS 407 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LA+ERGA D+ + R Sbjct: 408 MMLAKERGACP--------------DAADMGVMER------------------------- 428 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 S MAIAPTA+I+ I G S I+P N+Y +SG F V N +L L+ + Sbjct: 429 -FSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSKDS 487 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + + + +GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL++ Sbjct: 488 DTVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNLFI 547 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ +AW +G+K+ YYLRS+S + +++ Sbjct: 548 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------------GFAGGVEADNTPQ 595 Query: 937 SLGIPSSCTSDTECEVCQ 954 I + EC CQ Sbjct: 596 MRQIEVEMRNYDECLACQ 613 >gi|283856394|ref|YP_162774.2| ribonucleoside-diphosphate reductase subunit alpha [Zymomonas mobilis subsp. mobilis ZM4] gi|283775393|gb|AAV89663.2| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 613 Score = 416 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 196/678 (28%), Positives = 297/678 (43%), Gaps = 98/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY L E Q F RVA A + E A Y+ Sbjct: 25 DPSRDALLTAFGKATLDDRYLL-----PGESYQDLFARVADAYA----DDEAHAQRLYDY 75 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT+ SC+L VPD L GI EN LA GG+G W Sbjct: 76 ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIVDIWNENVWLASRGGGIGTYWG 135 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++ Sbjct: 136 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V + L SP + Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRD------------------- 235 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 ++ A +L++K++ +TG P+I F D N P+ H V SS Sbjct: 236 --------GTKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + + I +R LDNV ID Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQWHDNKRFIEDVMRFLDNVLQSYIDN 347 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + A+ + R++GLG+MGF S L IP+ A + I+ AS Sbjct: 348 APDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKVNEAS 407 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LA+ERGA D+ + R Sbjct: 408 MMLAKERGACP--------------DAADMGVMER------------------------- 428 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 S MAIAPTA+I+ I G S I+P N+Y +SG F V N +L L+ + Sbjct: 429 -FSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSKDS 487 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 +A+ + + +GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL++ Sbjct: 488 DAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNLFI 547 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ +AW +G+K+ YYLRS+S + +++ Sbjct: 548 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------------GFAGGVEADNTPQ 595 Query: 937 SLGIPSSCTSDTECEVCQ 954 I + EC CQ Sbjct: 596 MRQIEVEMRNYDECLACQ 613 >gi|296282220|ref|ZP_06860218.1| ribonucleotide-diphosphate reductase subunit alpha [Citromicrobium bathyomarinum JL354] Length = 690 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 199/678 (29%), Positives = 301/678 (44%), Gaps = 93/678 (13%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G + L DRY L E Q F RVA A + + A Y+ Sbjct: 97 DSARDANLTEFGKETLEDRYLL-----PGESYQDLFARVADAYA----DDQAHAQRLYDY 147 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S+ FM +TP L N GT SC+L +V D L GI EN LA GG+G W Sbjct: 148 ISNLWFMPATPVLSNGGTNRGLPISCYLNSVEDSLNGIVDTWNENVWLASKGGGIGTYWG 207 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++ Sbjct: 208 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM++V + L SP + Sbjct: 267 RKPSGDFNRKALNLHHGVLVTDEFMEKVRAGEEFDLVSPRD------------------- 307 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V + + A +L++K++ TG P+I F D N P+ H V +S Sbjct: 308 --------GSVRKTVDARSLFQKLVETRLATGEPYIVFSDTVNSMMPKHHRDLGLKVSTS 359 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + +++ I +R LDNV ID Sbjct: 360 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLEKWDEWNSDKQFIEDVMRFLDNVLQDYIDR 419 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++G+G+MGF S L ++P P A + + IS A AS Sbjct: 420 APPEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNIKMFQHISTAANEAS 479 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LA ERG + + Sbjct: 480 MMLAHERGPCPDAEEMGAME---------------------------------------- 499 Query: 759 RNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S MAIAPTA+I+ IC G S I+P N+Y +SG F V N +L L ++ Sbjct: 500 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLQELLAKKSKDS 559 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + + GS+ +++ + + K I+ T+FEID WL+E A+ R IDQAQSLNL++ Sbjct: 560 TNVWNSILERGGSVAHLDFLTPEEKAIYKTSFEIDQRWLLEFAADRSPMIDQAQSLNLFI 619 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ AW +K+ YYLRS+S G G + A ++ Sbjct: 620 PADVDKWDLMMLHFHAWEKKIKSLYYLRSKSIQRA------GFAGGVEADNTSEAAKYEL 673 Query: 937 SLGIPSSCTSDTECEVCQ 954 + G T EC CQ Sbjct: 674 AAGTGEQ-TDYEECLACQ 690 >gi|116873588|ref|YP_850369.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742466|emb|CAK21590.1| ribonucleoside-diphosphate reductase alpha chain [Listeria welshimeri serovar 6b str. SLCC5334] Length = 764 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 244/794 (30%), Positives = 369/794 (46%), Gaps = 84/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 10 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + + AR L KL ++ + + Y E Sbjct: 70 IREAEARTDIHIAEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ DL+ + E+D F Y GL +L RY + E+PQ Sbjct: 125 RGIYSGNILKNYSKEDLIVAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ K E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364 Query: 499 WTLFSPDEVSDLHDLYGKEFEIA------YENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F + + E + + A+ + ++++ Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGIGTFREKYEELVADETISKKIVKAIDIMKRIMMS 424 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 485 AGDFVVCNLSSVNLGRA--VLAEEEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 542 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 543 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 602 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 603 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 648 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 649 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 682 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 683 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 738 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 739 WNEGLKTTYYVRSN 752 >gi|260752514|ref|YP_003225407.1| ribonucleotide-diphosphate reductase subunit alpha [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551877|gb|ACV74823.1| ribonucleoside-diphosphate reductase, alpha subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 613 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 197/678 (29%), Positives = 298/678 (43%), Gaps = 98/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY L E Q F RVA A + E A Y+ Sbjct: 25 DPSRDALLTAFGKATLDDRYLL-----PGESYQDLFARVADAYA----DDEAHAQRLYDY 75 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT+ SC+L VPD L GI EN LA GG+G W Sbjct: 76 ISRLWFMPATPVLSNGGTKRGLPISCYLNAVPDSLQGIIDIWNENVWLASRGGGIGTYWG 135 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL++ Sbjct: 136 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDISHPEIEEFLEI 194 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V + L SP + Sbjct: 195 RKPSGDFNRKALNLHHGVLVTDAFMEAVRDGRSFDLVSPRD------------------- 235 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 ++ A +L++K++ +TG P+I F D N P+ H V SS Sbjct: 236 --------GSKRGEVDARSLFQKLVETRLQTGEPYIVFIDHVNNNMPRHHQALGLKVSSS 287 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + + I +R LDNV ID Sbjct: 288 NLCSEITLPTGQDHLGNQRTAVCCLSSLNLVTWDQWHDNKRFIEDVMRFLDNVLQSYIDN 347 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + A+ + R++GLG+MGF S L IP+ A + I+ A AS Sbjct: 348 APDEMSHARYAAMRERSVGLGVMGFHSFLQARKIPFEGALAKSWNLKIFRHINTKANEAS 407 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LA+ERGA D+ + R Sbjct: 408 MMLAKERGACP--------------DAADMGVMER------------------------- 428 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 S MAIAPTA+I+ I G S I+P N+Y +SG F V N +L L+ + Sbjct: 429 -FSCKMAIAPTASISIIAGGASACIEPIPANIYTHKTLSGSFVVKNPYLQKLLQDKSKDS 487 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 +A+ + + +GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL++ Sbjct: 488 DAVWNSILEKNGSVQHLDCLTAEEKDTFKTSFEIDQRWLLEMAADRTPYIDQAQSLNLFI 547 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ +AW +G+K+ YYLRS+S + +++ Sbjct: 548 PADVEKWDLLMLHFRAWELGIKSLYYLRSKSLQRA------------GFAGGVEADNTPQ 595 Query: 937 SLGIPSSCTSDTECEVCQ 954 I + EC CQ Sbjct: 596 MRQIEVEMRNYDECLACQ 613 >gi|289435503|ref|YP_003465375.1| ribonucleoside-diphosphate reductase alpha chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171747|emb|CBH28293.1| ribonucleoside-diphosphate reductase alpha chain [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 763 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 243/794 (30%), Positives = 370/794 (46%), Gaps = 85/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 10 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + + AR L KL ++ + + Y E Sbjct: 70 IREAEARTDIHIAEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ +L+ + E+D F Y GL +L RY + E+PQ Sbjct: 125 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 185 WLTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 424 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI+AS +LAQE+GAY FKG Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 601 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 602 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 647 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 648 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 681 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 682 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 737 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 738 WNEGLKTTYYVRSN 751 >gi|162147607|ref|YP_001602068.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|209542239|ref|YP_002274468.1| ribonucleotide-diphosphate reductase subunit alpha [Gluconacetobacter diazotrophicus PAl 5] gi|161786184|emb|CAP55766.1| Ribonucleoside-diphosphate reductase large subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209529916|gb|ACI49853.1| ribonucleoside-diphosphate reductase, alpha subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 665 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 201/682 (29%), Positives = 299/682 (43%), Gaps = 93/682 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L +RY L E Q F RV+ A Y+ Sbjct: 65 VNRSRDALLTPFGKATLDNRYLLEG-----ESYQDLFGRVSSYYGA----DPGHAQRLYD 115 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 116 YMSRHWFMPATPVLSNGGTTRGLPISCFLNEANDSLRGIVDLWNENVWLASKGGGIGSYW 175 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G ++ NGK+ GVIPF++V + +A++QG R+G+ YL WH ++EEF++ Sbjct: 176 GNLRSIGENVGR-NGKTSGVIPFIRVMDSLTLAISQGSLRRGSAAVYLPVWHPEIEEFIE 234 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LR+ TG D R+ +++ + D FM+ V ++ W L SP + Sbjct: 235 LRRPTGGDPNRKALNLHHGVLVSDAFMRAVAEDGEWALLSPKD----------------- 277 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 RKISA +LW ++LT E G P+I + D N P+ H V Sbjct: 278 ----------GAHIRKISARSLWIRILTARMEQGEPYIIYSDHVNNARPEHHKMAGLEVK 327 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 +SNLC EITL + + L + ++ I + LDNV I Sbjct: 328 TSNLCAEITLPTGMDHHGNERTAVCCLSSLNLETWDEWKDDPRFIEDVMLFLDNVLQDFI 387 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D +E+AK + R++GLG+MGF S L +IP+ S A + I A Sbjct: 388 DRAPDDMERAKYAASRERSVGLGVMGFHSFLQANNIPFESVIAKVWNKRIFKHIREQADL 447 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA+ RG Sbjct: 448 ASRKLAELRGPCP------------------------------------------DAAEY 465 Query: 757 GMR--NSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G SN +AIAPTA+I+ I G S I+P N++++ +SG FTV N L+ L + Sbjct: 466 GFMERFSNKLAIAPTASISIIAGNASPGIEPIAANVFLQKTLSGSFTVRNRHLLKLLIDK 525 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 E + S + GS+ +++ + K + TAFE+D W++E A+ R +I QAQS+ Sbjct: 526 GQNTEEVWSSITLTKGSVQHLDFLTQQEKDVFKTAFELDQRWVVEHAADRAGYICQAQSI 585 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 NL+L + + L I+ AW G+K+ YY RS S + T+ V GK++ + Sbjct: 586 NLFLPADVHKRDLHQIHYLAWKRGVKSLYYCRSLSIQRAD--TVSNVLGKVDVMADEPSA 643 Query: 933 SSTHSLGIPSSCTSDTECEVCQ 954 + P+S + EC CQ Sbjct: 644 PAPAPASPPASSNNYDECLACQ 665 >gi|284928995|ref|YP_003421517.1| ribonucleoside-diphosphate reductase, subunit alpha [cyanobacterium UCYN-A] gi|284809454|gb|ADB95159.1| ribonucleoside-diphosphate reductase, alpha subunit [cyanobacterium UCYN-A] Length = 770 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 224/786 (28%), Positives = 367/786 (46%), Gaps = 86/786 (10%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 A K+K+ DG+ + + ++ +V ACSG +DV+S + + + DG++ D++ Sbjct: 31 ASKIKVERRDGSWAALDIGKIRAVVSWACSG-KDVNSIALEAGLTTRLRDGITTKDIQNN 89 Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 LI + + +EP++ V R + L + +L + + K Y + Sbjct: 90 LINCTLEMCSPQEPDWRYVAGRLHIWSLWKNILVSRGYQYDK---------YEFTVQTKV 140 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 E + L +L + + + D ++Y G +L RY L E+PQ Sbjct: 141 ENRQYDKRLLT-YSLEELKEAGSWINSDWDIDYDYAGAVLLSSRYLL-----PDELPQEA 194 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 + A+ LA+ E + A FY +++ +TP L N L+SCF+ + D Sbjct: 195 LLTCALLLAIVEAPQNRLPWAKRFYEAIATRKISLATPILANLRVPEGSLTSCFIIAIDD 254 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL I + A ++K GG+G + + +R G+ + G S G+IP++K+ NDTA+AV Sbjct: 255 DLESICEGVTNAARISKNGGGVGANVSRIRATGSWVMGKANASGGIIPWVKLLNDTAIAV 314 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQGG+R GA+ ++ WH+D+ EFL+++ GD RR+ +D+ + D FM+RV Sbjct: 315 NQGGRRAGAITISVDIWHLDIPEFLEMQTENGDQRRKAYDVFPQLVLTDEFMRRVENKQE 374 Query: 499 WTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P EV +L +L+G+EFE AY E + +I +++KI+A L++ ++ Sbjct: 375 WTLVDPYEVRTKLGIELAELWGEEFERAYTLIESELGN-KITLYKKINARELFKNIMRSQ 433 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE-ETAVCNLGSINLLAHFA 612 ETG P++ FKD N +P +HVG + S NLCTE N E+ CNL S+NL Sbjct: 434 IETGMPYLAFKDTINRANPNKHVGYIPSVNLCTESFSNVDPRKESHCCNLVSLNLANI-- 491 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + ++ AVR+LDN IDI AK N +R IG+G MG L + Sbjct: 492 ----EESEIGYLSSLAVRILDNTIDITNPPFSYAKAHNDRYRTIGVGCMGLADWLAKRFL 547 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y + + E + + S+EL++ERGAY++F GS W +G + ++ Sbjct: 548 TYDD---INAISQLFEEVGYWCTHTSMELSKERGAYNAFAGSDWSKGKL------IGSKP 598 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D N + + W EL + +KT G+RNS+ AIAP + + + G + SI P Y + Sbjct: 599 VDWFIENASQKERWVELSENIKTYGIRNSHITAIAPNTSSSLVQGCTASILPVYSRFFYD 658 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G + F + W YH+ + +D Sbjct: 659 KWAKGTVPIAPPF-----IKESFW--------FYHENKV-------------------LD 686 Query: 853 PMWLIESASRRQKWIDQAQSL----NLY----LDEPSGK-----KLDFIYRQAWLMGLKT 899 +I++ S Q+WID S+ NL L E + ++ AW G K Sbjct: 687 QQKVIKAVSAIQEWIDTGISMELLFNLNKGIYLPEEPESSLSATDIFKMFVTAWKNGCKA 746 Query: 900 TYYLRS 905 YY+R+ Sbjct: 747 IYYVRT 752 >gi|313632344|gb|EFR99386.1| ribonucleoside-diphosphate reductase, alpha subunit [Listeria seeligeri FSL N1-067] Length = 759 Score = 415 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 243/794 (30%), Positives = 370/794 (46%), Gaps = 85/794 (10%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 6 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 65 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + + AR L KL ++ + + Y E Sbjct: 66 IREAEARTDIHIAEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 120 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ +L+ + E+D F Y GL +L RY + E+PQ Sbjct: 121 RGIYSGNILKNYSKEELIEAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 180 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 181 WLTIALYLMQNEPKEKRMNLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 240 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 241 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 300 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 301 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 360 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 361 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYDELVADETISKKIVKAIDIMKRVMMS 420 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 421 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 480 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 481 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 537 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI+AS +LAQE+GAY FKG Sbjct: 538 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAITASTKLAQEKGAYKVFKG 597 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ G + A + W EL K V G+RN+ +A+AP + A Sbjct: 598 SDWNTG--------------EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTA 643 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G + SIDP Y Y + V+ L N Sbjct: 644 QIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDL--------------------------N 677 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + P K + +D + RRQ+ +DQ+ S N Y+ KL ++ A Sbjct: 678 LSTYPYYEKGAYK----VDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTA 733 Query: 893 WLMGLKTTYYLRSR 906 W GLKTTYY+RS Sbjct: 734 WNEGLKTTYYVRSN 747 >gi|217967765|ref|YP_002353271.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus turgidum DSM 6724] gi|217336864|gb|ACK42657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dictyoglomus turgidum DSM 6724] Length = 749 Score = 415 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 179/671 (26%), Positives = 291/671 (43%), Gaps = 83/671 (12%) Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYN 344 L IL RY NG+ IE P+ F RVA +A + + FY Sbjct: 5 ELTEQALMILEKRYLKKDENGNVIETPEEMFERVAETIAKVDLIYDPNADVEAVKDIFYE 64 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 ++SS F+ ++PTL N+G QLS+CF+ + D L IF L+ A++ + GG G + Sbjct: 65 MMSSLEFLPNSPTLMNAGRPLGQLSACFVIPIEDSLVSIFDGLKYAALIHQSGGGTGFSF 124 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G + T G + G + F+KV + + QGG R+GA L H D+ EF+ Sbjct: 125 SKIRPKGDIVRSTGGIASGPVSFMKVYDAATDTIKQGGVRRGANMGILRVDHPDIWEFVT 184 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + D + N + + D FM+ V + ++L +P Sbjct: 185 CK----DQEGVLSNFNISVAVTDGFMEAVLNDEEFSLINPR------------------- 221 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 +V ++I A L+ ++ ++ G P + F D N ++P VG + S+N Sbjct: 222 --------NKEVVKRIRAKELFDLIVEQAWKNGEPGVIFIDEINRKNPTPEVGEIESTNP 273 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINC 640 C E L CNLGSINL + ++DKL +T+ AV LDNVID N Sbjct: 274 CGEQPLLPF----ESCNLGSINLGRMLKKVGDKYEINWDKLRTTVHNAVHFLDNVIDANF 329 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + ++ ++ +R IGLG+MGF L L +PY + EA +IA+ M FI A AS E Sbjct: 330 YPLKPIEEMTKANRKIGLGVMGFYDLLIRLEVPYNTKEARDIAENIMSFIQKEAREASQE 389 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERG + ++ S++ +RN Sbjct: 390 LAKERGVFPNWDKSIYRDMGLR-----------------------------------LRN 414 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 + IAPT +I+ I S I+P + + + G++ V L + +L+ E + Sbjct: 415 ATLTTIAPTGSISIIANCSSGIEPIFALAFKRKISLGEWNEVYPLFKEALIKENLYSEEL 474 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879 I + G+I NI IP+ LK++ TA +I P + + QK++D A S + L ++ Sbjct: 475 IEKVI-QKGTIQNITEIPEKLKRLFVTALDISPEDHVLMQASFQKYVDNAVSKTVNLRED 533 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 + + + IY A+ + LK R +S S + K ++ Sbjct: 534 ATLEDIRKIYLMAYELKLKGITVYRDKSRASQVLAVEKEKKETKERDAHKLIPRPRPTIT 593 Query: 940 IPSSCTSDTEC 950 ++ T C Sbjct: 594 KGATIKMRTGC 604 >gi|326386065|ref|ZP_08207689.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium nitrogenifigens DSM 19370] gi|326209290|gb|EGD60083.1| ribonucleotide-diphosphate reductase subunit alpha [Novosphingobium nitrogenifigens DSM 19370] Length = 685 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 199/678 (29%), Positives = 296/678 (43%), Gaps = 96/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G + L DRY L E Q F RVA A + A Y+ Sbjct: 95 DPSRDALLTAFGKETLDDRYLL-----PGETYQDLFARVADAYA----DDAGHAQRLYDY 145 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT SC+L +V D L GI EN LA GG+G W Sbjct: 146 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVEDSLEGIVATWNENVWLAARGGGIGTYWG 205 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 206 KVRGIGESVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 264 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V + L SP + Sbjct: 265 RKTSGDFNRKALNLHHGVLLTDEFMQAVRDGTEFDLKSPKD------------------- 305 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V +++A AL++K++ + TG P+I F D N P+ H +V +S Sbjct: 306 --------GSVRGRLNARALFQKLVEVRLATGEPYIVFSDTVNRTMPKHHRDLGLMVSTS 357 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLC+EITL + + L + ++ + I +R LDNV+ Sbjct: 358 NLCSEITLPTGRDHLGNDRTAVCCLSSLNLETWEEWHEDKLFIEDVLRFLDNVLQDFIER 417 Query: 643 IEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 S R++G+G+MGF S L I + S A + I+ A AS Sbjct: 418 APDEMARAKYSAARERSVGMGVMGFHSFLQKKSIAFESAMAKAWNLKMFRHIAARADEAS 477 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LAQERG D V Sbjct: 478 LLLAQERGPCP-------------------------------------DAADMGVMQ--- 497 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S MAIAPTA+I+ ICG S I+P N+Y +SG F V N +L LK++ Sbjct: 498 RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFVVKNPYLEKLLKEKSKDS 557 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + + GS+ +++ + + K ++ T+FEID WL+E A+ R +IDQAQSLNLY+ Sbjct: 558 TNVWNSILERGGSVQHLDFLTPEEKAVYKTSFEIDQRWLLEFAADRTPYIDQAQSLNLYI 617 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ QAW G+K+ YYLRS+S D + Sbjct: 618 PADVDKWDLLMLHFQAWEKGIKSLYYLRSKSVQRA----------GFAGGVEADNTPAAP 667 Query: 937 SLGIPSSCTSDTECEVCQ 954 + + + T EC CQ Sbjct: 668 VIELEARQTDYEECLACQ 685 >gi|302349050|ref|YP_003816688.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans 345-15] gi|302329462|gb|ADL19657.1| Ribonucleoside-diphosphate reductase [Acidilobus saccharovorans 345-15] Length = 756 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 205/821 (24%), Positives = 361/821 (43%), Gaps = 92/821 (11%) Query: 156 SFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPN 215 ++ ++A + + E + S +L T + + + +P Sbjct: 3 ELTRTKVIAWAKQASRD-AGLDPSQIEFELLR--LQASSPQELFTKALSTFASWSLLDPR 59 Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD 275 + + R +L K+ E + K Sbjct: 60 WEEAARRLILYKIYEEKGSEAPGK------------------------------------ 83 Query: 276 FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--- 332 L + + ++GL +LY+RY + G +E P RVA +A E Sbjct: 84 --LEGIESWA--------TWVGLNLLYERYLVKRKGFVVETPNEALERVASFVAEAELSL 133 Query: 333 -TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391 + EFY ++SS FM ++PT+ NSGT++ QL++CF+ + DD+ IF AL A Sbjct: 134 GGSLDAARQEFYEIMSSGRFMPNSPTIMNSGTKYHQLAACFVIPLEDDMDSIFSALNTAA 193 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 + K G G D+TP+RG G+ + G + G + F+K+ ++ A + +GG+R+ A+ Sbjct: 194 WVFKTGAGAGFDFTPLRGRGSPLS-FGGTASGPVSFMKLFDEVADVIKEGGRRRAAMMGV 252 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H+D+E+F++ + + G + + N + + D FM ++ W L+ P+E L Sbjct: 253 LHDVHVDLEDFINSKLSGGLE-----NFNISVGVHDAFMMAAASDSEWNLYDPNECPQLV 307 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 L + + R + A +L + +ETG P + F D N + Sbjct: 308 GLLSGDLPDLWRRC---------SPRRTVRASSLLEEAARAAWETGDPGLVFLDTINQHN 358 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 P +G + ++N C E L S CNLGS+NL + + D++ L IR AVR Sbjct: 359 PTPRLGRIRATNPCGETPLLS----WEACNLGSLNLGRYVKDEGIDWELLEHDIRIAVRF 414 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LD+VI+ + + + + + R IGLG+MG+ L L IPY S A+ +AD+ MEFI+ Sbjct: 415 LDDVIETSWYPRPEIEAAVKRTRKIGLGVMGWADMLAKLKIPYDSDSALYLADKLMEFIA 474 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT--------SR 743 + A S L++ERG Y F GS+ G F + +++ DE ++ + Sbjct: 475 YVARDESNRLSRERGPYPEFPGSIHKDGRFNFEPQVSSSQIYDESKVSDAVHSIVNSRPK 534 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L WD ++ + G RN+ IAPT +I+ I S SI+P Y +Y++ + + +N Sbjct: 535 LDWDRVRSEMME-GTRNATMTTIAPTGSISIIADASSSIEPFYSLIYIRQSSLFSWVELN 593 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 FL + L++ + + I D+ H GS+ + +P D++ + TA +ID W + + Sbjct: 594 RFLRDWLQESNNLNAEKIKDVIRHGGSVRGLSWVPSDVQAVLGTALDIDWRWHVRMQAVF 653 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 Q+W+D A S + + + + + ++ +AW + K R +S S + +D Sbjct: 654 QRWVDNAVSKTVNMRRDATVDDVKGVFIEAWRLKCKGITVFRDQSKGVQVMSVNQNIDAL 713 Query: 923 LNA-------VPVTDPNSSTHSLGIPSSCTSDT---ECEVC 953 + V + G S S+ C C Sbjct: 714 IREPPNLRIRVKAKMVPGVINVEGSALSAVSEEYAGGCPTC 754 >gi|91763117|ref|ZP_01265081.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717530|gb|EAS84181.1| ribonucleotide-diphosphate reductase alpha subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 645 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 204/680 (30%), Positives = 294/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY H E Q F RVA A + A YN Sbjct: 51 IDRSRDSKLTDFGRATLKDRYLGHN-----ESYQDLFARVASSYA----DDNLHAQRIYN 101 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W Sbjct: 102 YISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYW 161 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G I GK+ G+IPF+KV + +A++QG R+G+ YL H ++EEF++ Sbjct: 162 GNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIE 220 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 221 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDGQWALKSPAD----------------- 263 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + ISA LW ++LT ETG P+I + D N + PQ H V Sbjct: 264 ----------GTVQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVK 313 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +SNLC+EITL + ++ L + ++ I +R LDNV+ Sbjct: 314 TSNLCSEITLPTGIDKNGRDRTAVCCLSSLNLEKYDEWKDDNVMINDVMRFLDNVLTDFI 373 Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + S R++GLG+MGF S L IP S + + + I H Sbjct: 374 ERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVDQ 433 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA ERGA D+ R Sbjct: 434 ASKDLADERGACP--------------DAADYGYNER----------------------- 456 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ ICG S ++P N Y +SG F V N +LV L++ Sbjct: 457 ---FSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHGK 513 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + + S + + GS+ +++ + D K + TAFE+D W+IE + R +I QAQS+NL Sbjct: 514 NTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSINL 573 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 ++ + ++L I+ AW GLK+ YY RS+S E D K V S Sbjct: 574 FVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE----NVNDTKATDVNANVYKSK 629 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + P EC CQ Sbjct: 630 PQTTEQPE----YEECLSCQ 645 >gi|237738279|ref|ZP_04568760.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium mortiferum ATCC 9817] gi|229420159|gb|EEO35206.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium mortiferum ATCC 9817] Length = 748 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 225/829 (27%), Positives = 379/829 (45%), Gaps = 108/829 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ G + K++ + +AC L+ V+ + S +G++ ++ LI + Sbjct: 4 VVNRAGIKEELDIKKIREKLIKACDNLE-VNMIELESHIDAIYQEGITTKKIQETLITQA 62 Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 ++ +E ++ V R L+ + REV K + + +++ + Sbjct: 63 VAMVSFEESDWTYVAGRLLMMETEREVFHKRGFSYGK---------FLQTVRELVDKKIY 113 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 L D ++ L + +RD ++Y G +L +RY + G+ E+PQ FM +A Sbjct: 114 DSRL-GDYSDKEIEELGKYIAPDRDMMYDYAGANMLVNRYLIKYLGNTYELPQEVFMCIA 172 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFG 385 M LA+ E + + A +FY+ LS +TP L N LSSCF+T + D++ IF Sbjct: 173 MLLAINEKNRVEIAKKFYDALSLKKISLATPILANLRIPKGNLSSCFITAIDDNIESIFY 232 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 + A ++K GG+G + + +R + ++G S GV+P++++ NDTAVAVNQ G+R Sbjct: 233 NIDTIAKISKNGGGVGVNISRIRAKNSMVNGYYNASGGVVPWIRIINDTAVAVNQQGRRA 292 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GAV L+TWH+D+E+FL+L+ GD R + +D+ + D+FMKRV ++ WTL P Sbjct: 293 GAVTVALDTWHLDIEKFLELQTENGDQRTKAYDIYPQVVVSDIFMKRVEKDEMWTLVDPY 352 Query: 506 EVSDLHDL-----YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 E+ ++L YG EFE Y E + + ++I A L+++++ + ETG P+ Sbjct: 353 EIRMKYNLELCELYGVEFEKIYLQIENDET---LTLKKRIRARELFKEIMKVQIETGMPY 409 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--SSSEETAVCNLGS----INLLAHFANN 614 I FKD N + H+G++ + NLC E N S T N GS ++L N Sbjct: 410 IFFKDRANRMNHNNHIGMIGNGNLCMESFSNFAPSKNYTEEENNGSGVRKVDLGMVHTCN 469 Query: 615 -------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + + D+L AVR+LDN ID+ I ++ + N +R IG+G MG + Sbjct: 470 LVSMNLAEIERDELEDITGIAVRILDNTIDLTETPILESDRHNSNYRTIGVGTMGLADFM 529 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y E+++ D E I+ + + AS LA+ERGAY FK S+WD+GVF Sbjct: 530 AKEFMIYE--ESLDEIDRLYEEIALYTVKASALLAKERGAYPYFKNSMWDRGVFF----- 582 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + R N W+E+ VK G+RN A+AP + + + G + S++P++ Sbjct: 583 --QKDRVWYEENSQFADKWNEVFNLVKEYGLRNGELSAVAPNTSTSLLMGATASVNPTFS 640 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 +++ N G V + LK R + + Sbjct: 641 RFFIEKNQKGAVPRVVKY----LKDRAWFYPEFKN------------------------- 671 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGLKTTYYLR 904 +D ++ SR KWI Q S+ L D K + + AW G K+ YY+R Sbjct: 672 ---VDAQTYVKMMSRIGKWITQGVSMELLFDLNKNIRAKDIYDTFLTAWKEGCKSVYYIR 728 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++K+T + ECE C Sbjct: 729 T-----IQKNT--------------------------NIAKDKEECESC 746 >gi|95930217|ref|ZP_01312955.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans DSM 684] gi|95133680|gb|EAT15341.1| ribonucleotide reductase large subunit [Desulfuromonas acetoxidans DSM 684] Length = 738 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 183/655 (27%), Positives = 304/655 (46%), Gaps = 80/655 (12%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345 L +L RY G +E P F RVA +A E + +K+A EFY++ Sbjct: 12 LTNNALTVLERRYLKRDEKGRALETPANMFERVANAIAEAEKKFDKKADTKKVAAEFYDM 71 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 72 ITNLEFLPNSPTLMNAGRELGQLSACFVLPVADSMESIFEAIKNTALIHKSGGGTGFSFS 131 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G + F+KV + + QGG R+GA L H D+ +F+ Sbjct: 132 RIRPANDVVLSTKGVSSGPLSFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMC 191 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D+ + N + + + FM+ V + + + +P Sbjct: 192 KR----DQTVLTNFNISVGLTEEFMEAVKTDGEYDIINPRT------------------- 228 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V K+SA ++ ++ + + G P I F D N +P H+G + S+N C Sbjct: 229 --------GEVCDKMSAAKVFDHIVDLAWNNGEPGIIFLDRLNRDNPTPHIGEIESTNPC 280 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + Q D+DKL T++ +VR LDNVI++N + I + Sbjct: 281 GEQPLLPY----ESCNLGSINLNRMVKDGQVDWDKLRKTVQKSVRFLDNVIEVNNYPIPE 336 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + + +R IGLG+MG+ L + I Y EA E+A + M+FI+ A AS +LA+ER Sbjct: 337 ITEMSLANRKIGLGIMGWADMLIRVGISYCDQEAAELAAKLMKFINDEAHQASRDLAKER 396 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ +F+GS+++Q P +RN+ C Sbjct: 397 GAFPNFEGSIFEQRQEPK----------------------------------IRNATCTT 422 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ I S I+P + YV+ M D V VN K+R + ++ L Sbjct: 423 IAPTGTISIIANSSSGIEPLFAVSYVRQVMDNDILVEVNPLFEEVAKERGFYSPELM-KL 481 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 G+I + ++IP+D++++ TA +I P I S QK+ D A S + + + Sbjct: 482 IAEKGTIQDFDQIPEDVRRVFVTAHDITPEEHIRMQSAFQKYTDNAVSKTVNFCNSANRD 541 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 + +Y+ A+ G K R S + ++K + + VP+ ++ Sbjct: 542 DVAQVYQMAYESGCKGVTIYRDGSR-DAQVLSVKKEEKNESTVPMESKKATRKRD 595 >gi|330814260|ref|YP_004358499.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487355|gb|AEA81760.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 648 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 199/680 (29%), Positives = 292/680 (42%), Gaps = 97/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY E Q F RVA A + YN Sbjct: 56 IDRSRDSKLTDFGKATLVDRYLNEG-----ESYQDLFARVASTYA----DDNLHGQRIYN 106 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM STP L N+GT SCFL D L GI EN LA GG+G+ W Sbjct: 107 YMSNLWFMPSTPVLSNAGTERGLPISCFLNEASDSLNGIVDLWSENVWLAAKGGGIGSYW 166 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + GK+ G++PF+KV + +A++QG R+G+ YL H ++EEF++ Sbjct: 167 GNLRSIGEQVGRV-GKTSGIMPFIKVMDSLTLAISQGSLRRGSAACYLPIDHPEIEEFIE 225 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D RR +++ + D FM+ V + W L SP + Sbjct: 226 MRRPTGGDPNRRALNLHHGVLVTDAFMRAVELDEQWPLKSPHD----------------- 268 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V +SA LW ++LT ETG P+I F D N PQ H V Sbjct: 269 ----------GTVQSSMSARNLWIRLLTARVETGEPYIVFIDTVNRMIPQHHKLAGLTVK 318 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +SNLC+EITL + +++ L + ++ + ++ LDNV+ Sbjct: 319 TSNLCSEITLPTGIDKSGRDRTAVCCLSSLNLETYDEWKDEKIMLEDIMKFLDNVLTDFI 378 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 ++ + R++GLG+MGF S L IP S A ++ + I + Sbjct: 379 TRAPESFSDATYAAMRERSVGLGVMGFHSFLQKNSIPIESVMAKVWNNKMFKQIDKEVNA 438 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ASV+LA+ERG D + Sbjct: 439 ASVKLAEERGPCP-------------------------------------DAADYGIME- 460 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R SN AIAPTA+I+ ICG S I+P N Y +SG F V N +L L + + Sbjct: 461 --RFSNKTAIAPTASISIICGGASPGIEPVAANSYTHKTLSGSFNVRNKYLKQILAKYEK 518 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + + S + + GSI ++ + D K + TAFEID WLI+ ++ R ++ QAQSLN+ Sbjct: 519 DTDEVWSSITTNQGSISHLNFLSDLEKDVFKTAFEIDQRWLIDHSADRTPYVSQAQSLNV 578 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + K L I+ QAW GLK+ YY RS+S E +N + Sbjct: 579 FLPADVHKKDLHQIHFQAWKKGLKSMYYCRSKSIQRAE---------VINQTVANAAKNQ 629 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + + EC CQ Sbjct: 630 PAEASNGEAA-NYEECLSCQ 648 >gi|309797908|ref|ZP_07692289.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|308118516|gb|EFO55778.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] Length = 771 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 197/835 (23%), Positives = 329/835 (39%), Gaps = 91/835 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G + ++ +V G++ VS+ V +++DG++ S L AL+ Sbjct: 1 MISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALV 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY++V AR + K+R++ + ++ + + + Sbjct: 61 KSAADLISPEAPNYSQVAARLNIFKIRKDAFGRYDYPN-----------FYQHIVKNVNK 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + L ++ L N +K +RD F Y L +Y + G E PQ Sbjct: 110 GVYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHI 169 Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 +M V M L + + FY++ S+F TP + T Q SSC L Sbjct: 170 YMLVGMCLFQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 230 ESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTA 289 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA A+ WH++VE L ++ N G D R ++ L +R+ Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLV 349 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 ++ TLFSP +V D+++ + + FE Y YE + + + A+ L+ ++ Sbjct: 350 RSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQ 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609 TG +I D N V SNLC EITL + G I L Sbjct: 406 ERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTL 465 Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + L AV LD+++D + +E A+ R++G+G+ F L Sbjct: 466 SAFNLGAIRSLESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNFAYYL 525 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ ++ E+ E I ++ + AS LA+ +G F+ + + G PID Sbjct: 526 AKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPIDHYR 585 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + N ++PW+EL++R+ G+RNS A P T + I + I+P Sbjct: 586 SSLDESG--ETNFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VKS+ G +V + LK+ + Sbjct: 644 PVSVKSSKDGIVKMVVPEF--------------------------------EKLKEQYEY 671 Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899 +++ D + + QK+ DQA S N D+ L A+ MG+KT Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMGVKT 731 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953 YY +R + D + + L + + EC+ C Sbjct: 732 LYYHNTR-----------------DGAGKRDDDEPQNPLAQAVAVEPEDECDGAC 769 >gi|39996969|ref|NP_952920.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter sulfurreducens PCA] gi|39983857|gb|AAR35247.1| ribonucleoside-diphosphate reductase, putative [Geobacter sulfurreducens PCA] gi|298505986|gb|ADI84709.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent [Geobacter sulfurreducens KN400] Length = 743 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 182/661 (27%), Positives = 301/661 (45%), Gaps = 82/661 (12%) Query: 293 FEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345 + +L RY G + +E P F RVA +A + +K+A +FY L Sbjct: 14 LSKNAVTVLEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYEL 73 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++SF F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 74 MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKYTALIHKSGGGTGFSFS 133 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T+G S G I F++V + + QGG R+GA L H D+ +F+ Sbjct: 134 RLRPAHDVVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMC 193 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + DD++ ++ N + + + FM+ V ++A + L +P + Sbjct: 194 K----DDQKHLNNFNISVGLTEAFMEAVERDADYDLINPRD------------------- 230 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K ++A ++ +++ ++ G P I F D N +P HVGV+ S+N C Sbjct: 231 --------GKPCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHVGVIESTNPC 282 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL N ++D+L +R AV LDNVI++N + + + Sbjct: 283 GEQPLLPY----ESCNLGSINLGKMVKNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQ 338 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + +R IGLG+MG+ L LL IPY SP+A+ + ++ M FI+ S ELA R Sbjct: 339 ISEMTRANRKIGLGVMGWADMLILLGIPYNSPQAISLGEKVMRFINDEGHVYSRELAAVR 398 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G++ +F GS++D R +RN+ Sbjct: 399 GSFPNFAGSIYD----------------------------------RASEGPIRNATVTT 424 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ I S ++P + +++ + + V VN +QR + E ++ + Sbjct: 425 IAPTGTISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPIFEEVARQRGFYSEELMQKI 484 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 H G+I ++ IP+D++KI TA +I P IE + QK+ D A S + + + Sbjct: 485 ARH-GTIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNSAAIE 543 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 ++ +YR A+ G K R S ST D + V P + Sbjct: 544 DVEKVYRLAYKSGCKGVTIYRDGSRDEQVLSTGVKEDKE---KVVQTEEKRAVKRDRPKA 600 Query: 944 C 944 Sbjct: 601 L 601 >gi|220980069|emb|CAP72261.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Escherichia coli LF82] gi|323934217|gb|EGB30641.1| ribonucleoside-diphosphate reductase [Escherichia coli E1520] Length = 771 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 197/835 (23%), Positives = 329/835 (39%), Gaps = 91/835 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G + ++ +V G++ VS+ V +++DG++ S L AL+ Sbjct: 1 MISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGITTSQLHEALV 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY++V AR + K+R++ + ++ + + + Sbjct: 61 KSAADLISPEAPNYSQVAARLNIFKIRKDAFGRYDYPN-----------FYQHIVKNVNK 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + L ++ L N +K +RD F Y L +Y + G E PQ Sbjct: 110 GVYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHI 169 Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 +M V M L + + FY++ S+F TP + T Q SSC L Sbjct: 170 YMLVGMCLFQNWEDDCAGKTRMEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 230 ESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTA 289 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA A+ WH++VE L ++ N G D R ++ L +R+ Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLV 349 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 ++ TLFSP +V D+++ + + FE Y YE + + + A+ L+ ++ Sbjct: 350 RSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQ 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609 TG +I D N V SNLC EITL + G I L Sbjct: 406 ERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTL 465 Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + L AV LD+++D + +E A+ R++G+G+ F L Sbjct: 466 SAFNLGAIRSLESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNFAYYL 525 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ ++ E+ E I ++ + AS LA+ +G F+ + + G PID Sbjct: 526 AKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPIDHYR 585 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + N ++PW+EL++R+ G+RNS A P T + I + I+P Sbjct: 586 SSLDESG--ETNFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VKS+ G +V + LK+ + Sbjct: 644 PVSVKSSKDGIVKMVVPEF--------------------------------EKLKEQYEY 671 Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899 +++ D + + QK+ DQA S N D+ L A+ MG+KT Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMGVKT 731 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953 YY +R + D + + L + + EC+ C Sbjct: 732 LYYHNTR-----------------DGAGKRDDDEPQNPLTQAVAVEPEDECDGAC 769 >gi|71083846|ref|YP_266566.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus Pelagibacter ubique HTCC1062] gi|71062959|gb|AAZ21962.1| ribonucleoside-diphosphate reductase alpha chain [Candidatus Pelagibacter ubique HTCC1062] Length = 645 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 203/680 (29%), Positives = 293/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY E Q F RVA A + A YN Sbjct: 51 IDRTRDSKLTDFGKATLKDRYLGQN-----ESFQDLFARVASSYA----DDNLHAQRIYN 101 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM +TP L N GT+ SCFL D L GI EN LA GG+G+ W Sbjct: 102 YISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYW 161 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G I GK+ G+IPF+KV + +A++QG R+G+ YL H ++EEF++ Sbjct: 162 GNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIE 220 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 221 MRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPAD----------------- 263 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + ISA LW ++LT ETG P+I + D N + PQ H V Sbjct: 264 ----------GTVQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVK 313 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +SNLC+EITL + ++ L + ++ I +R LDNV+ Sbjct: 314 TSNLCSEITLPTGIDKNGRDRTAVCCLSSLNLEKYDEWKDDNVMINDVMRFLDNVLTDFI 373 Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + S R++GLG+MGF S L IP S + + + I H Sbjct: 374 ERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVDQ 433 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +LA ERGA D+ R Sbjct: 434 ASKDLADERGACP--------------DAADYGYNER----------------------- 456 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ ICG S ++P N Y +SG F V N +LV L++ Sbjct: 457 ---FSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHGK 513 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + + S + + GS+ +++ + D K + TAFE+D W+IE + R +I QAQS+NL Sbjct: 514 NTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSINL 573 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 ++ + ++L I+ AW GLK+ YY RS+S E D K V S Sbjct: 574 FVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAE----NVNDTKATDVNANVYKSK 629 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + P EC CQ Sbjct: 630 PQTTEQPE----YEECLSCQ 645 >gi|197103807|ref|YP_002129184.1| ribonucleoside-diphosphate reductase, alpha subunit [Phenylobacterium zucineum HLK1] gi|196477227|gb|ACG76755.1| ribonucleoside-diphosphate reductase, alpha subunit [Phenylobacterium zucineum HLK1] Length = 619 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 197/679 (29%), Positives = 295/679 (43%), Gaps = 101/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY L E Q F RVA A + A Y+ Sbjct: 33 VDRSRDANLTDFGKTTLEDRYLL-----PGESYQDMFARVATAFA----DDADHAQRIYD 83 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM +TP L N G SCFL VPD+L GI EN LA GG+G W Sbjct: 84 YISNLWFMPATPVLSNGGASRGLPISCFLNAVPDNLDGIVSVWNENVALASNGGGIGTYW 143 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 144 GGVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 202 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM+ V A + L SP Sbjct: 203 IRKPSGDFNRKSLNLHHGLSITDEFMEAVRDGAMFGLRSPKT------------------ 244 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 +V R++ A +LW+K+L + +TG P++ F D N PQ V Sbjct: 245 ---------GEVIREVDARSLWQKILEIRLQTGEPYLIFSDTVNRAMPQHQRELGLQVRQ 295 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLC+EI L++ + L + A ++ + I +R LDNV++ H Sbjct: 296 SNLCSEIMLHTGQDHLGQERTAVCCLSSVNAEKFLEWRDHPTFIEDVMRFLDNVLEDFIH 355 Query: 642 TIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 K + R++GLGLMGF S L ++P+ S A + + +A Sbjct: 356 RAPPEMKNAVYAAKRERSVGLGLMGFHSFLQQQNVPFESALAKSWNMRLFKTLRRQCDAA 415 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S LA ERG D ++ V Sbjct: 416 SRTLAAERGPCP-------------------------------------DAAERGVME-- 436 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L L ++ Sbjct: 437 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYSHKTLSGTFAVKNPYLERLLDEKGQN 495 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 A+ + ++GS+ ++E + D K + TAFEID W++E A+ R I Q+QS+NL+ Sbjct: 496 TAAVWDSILANEGSVQHLEFLSQDEKDVFKTAFEIDQRWIVELAADRTPDICQSQSVNLF 555 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW G K+ YYLRS+S ++ Sbjct: 556 LPGDIDKWDLHMLHWTAWERGCKSLYYLRSKSVQRA---------------AHAGGEAAQ 600 Query: 936 HSLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 601 AVEMQVEGKTDYEECLACQ 619 >gi|293411956|ref|ZP_06654681.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] gi|291469511|gb|EFF12000.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B354] Length = 771 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 197/835 (23%), Positives = 329/835 (39%), Gaps = 91/835 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G + ++ +V G++ VS+ V +++DG++ S L AL+ Sbjct: 1 MISIVKRNGQTEPLSEEKYNRVVMYGVEGIRGVSASAVAMGAAASIFDGMTTSQLHEALV 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY++V AR + K+R++ + ++ + + + Sbjct: 61 KSAADLISPEAPNYSQVAARLNIFKIRKDAFGRYDYPN-----------FYQHIVKNVNK 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + L ++ L N +K +RD F Y L +Y + G E PQ Sbjct: 110 GVYDKDLLTHYSFEEIEELGNYIKPKRDDLFGYAATVQLQSKYLVQNRVTGEIHEGPQHI 169 Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 +M V M L + + FY++ S+F TP + T Q SSC L Sbjct: 170 YMLVGMCLFQNWEDDCAGKTRMEMVKGFYDITSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 230 ESGDSLKGISAASAAIIDYVSRRAGIGIGFGRIRALGSEIRNGEATHTGVIPFLKHFQTA 289 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA A+ WH++VE L ++ N G D R ++ L +R+ Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVVKNNRGIDENRVRHLDYGVMSNRLMYRRLV 349 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 ++ TLFSP +V D+++ + + FE Y YE + + + A+ L+ ++ Sbjct: 350 RSENITLFSPHDVPDMYEAFFTDQELFEKLYHKYEADDSIRK----KSVPAIELFSSLMQ 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609 TG +I D N V SNLC EITL + G I L Sbjct: 406 ERASTGRIYIANVDHINEHGAFIPALAPVRQSNLCMEITLPTRPLAFTDDPNGEIALCTL 465 Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + L AV LD+++D + +E A+ R++G+G+ F L Sbjct: 466 SAFNLGAIRSLESLKEVAFYAVAALDSLLDYQDYPMEAAEVPAKARRSLGIGVTNFAYYL 525 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 + Y+ ++ E+ E I ++ + AS LA+ +G F+ + + G PID Sbjct: 526 AKNGVRYSDTAGNKLVHETFEAIQYYLLDASCRLAEAKGECDWFEQTKYAIGQLPIDHYR 585 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + N ++PW+EL++R+ G+RNS A P T + I + I+P Sbjct: 586 SSLDESG--ETNFELKMPWEELRERIAKYGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VKS+ G +V + LK+ + Sbjct: 644 PVSVKSSKDGIVKMVVPEF--------------------------------EKLKEQYEY 671 Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899 +++ D + + QK+ DQA S N D+ L A+ MG+KT Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPSRFEGDKVPMMTLLSDLLLAYKMGVKT 731 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953 YY +R + D + + L + + EC+ C Sbjct: 732 LYYHNTR-----------------DGAGKRDDDEPQNPLTQAVAVEPEDECDGAC 769 >gi|237678831|emb|CAQ57558.1| NrdA protein [Bradyrhizobium elkanii] Length = 645 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 196/684 (28%), Positives = 294/684 (42%), Gaps = 100/684 (14%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 L RD G + DRY L E+ Q F RV+ A + A Sbjct: 53 RADLKLDRTRDDLLTPFGKLTVTDRYLL-----AGELLQDMFARVSCAFA----DDVAHA 103 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 Y+ +S FM +TP L N GT SCFL +V D L GI G EN LA GG Sbjct: 104 QRLYDAMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGG 163 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G W VR +G + G + G+IPF+ V + +A++QG R+G+ YL+ H ++ Sbjct: 164 IGTYWGNVRSIGEKVK--GGVTSGIIPFIHVMDGLTLAISQGSLRRGSAAVYLDIHHPEI 221 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEFL++RK +GD R++ +++ + D FM+ V + L SP Sbjct: 222 EEFLEIRKASGDFNRKSLNLHHGINVTDAFMRAVGAGTAFALRSPRTND----------- 270 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-- 577 V R+I A LW+++L +TG P++ F D N P+ Sbjct: 271 ----------------VIREIDARQLWQRILENRLQTGEPYLLFIDTVNRSLPKHQRELG 314 Query: 578 -VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV- 635 V +SNLC+EITL + + L + +++ I +R LDNV Sbjct: 315 LKVSTSNLCSEITLPTGIDHRGEERTAVCCLSSLNLETWDQWNEKPGFIEDVMRFLDNVL 374 Query: 636 ---IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 I + +++A+ + R++GLG+MGF S L IP S A I Sbjct: 375 THFITVAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMESVVAKSFNLNMFRKIRR 434 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A +ASV LA+ERG D L++ Sbjct: 435 DADAASVTLARERGPCP-------------------------------------DALERG 457 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 V R S+ +AIAPTA+I+ ICG S ++P N+Y +SG +V N L L Sbjct: 458 VMA---RFSHKIAIAPTASISIICGGTSACVEPIPANIYTHKTLSGAISVRNPHLAKLLA 514 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + A + H+GS+ +++ + + K + TAFEID W++E A+ R +I Q+Q Sbjct: 515 AKGADTSATWQSIIAHEGSVAHLDTLSEHEKAVFRTAFEIDQRWIVELAADRAAFICQSQ 574 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 S+NLYL + L ++ AW G+K+ YY RS+S + A Sbjct: 575 SINLYLPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRA-------------AFAGNI 621 Query: 931 PNSSTHSLGIPSSCTSDTECEVCQ 954 + + P T EC CQ Sbjct: 622 ADGDNAAPPQPQRHTDYEECLACQ 645 >gi|219849633|ref|YP_002464066.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus aggregans DSM 9485] gi|219543892|gb|ACL25630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chloroflexus aggregans DSM 9485] Length = 820 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 171/660 (25%), Positives = 289/660 (43%), Gaps = 46/660 (6%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFY 343 + +L RY L G IE P+ F RVA +A + E+RA FY Sbjct: 10 QLTDIARTVLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASSEQVEERAERFY 69 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +L++ +F ++PTL N+G QLS+CF+ + D+L I+ L+ A++ + GG G Sbjct: 70 HLMTQGYFEPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFS 129 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R + T G + G + F+ V N + A+ QGG R+GA L H D+ EF+ Sbjct: 130 FSRLRPRNDVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFI 189 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D + + N + + D FM+ V ++ + L +P ++ + Sbjct: 190 TCKL----DTTKITNFNISVAVTDAFMRAVDRDEEYDLINPRTG----QVHIASRDGLKH 241 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + R + A ++ ++ TG P + F D N +P H+G ++N Sbjct: 242 PLTGDVLVPPGQPMR-LRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGAYEATN 300 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 C E L + VCNLGSINL + D+D L + + R LDNVID N + Sbjct: 301 PCGEQPLLAY----DVCNLGSINLGKFVTADKTIDWDYLREVVHESTRFLDNVIDANHYP 356 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +E+ + R IGLG+MG+ L L IPY S +A+E+A + M FI + AS +LA Sbjct: 357 LEQITHLSQRIRRIGLGVMGWADMLVRLGIPYNSHDAIELARKVMHFIDEESKVASEQLA 416 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +ERG + ++ S+W R + + R RL +RN N Sbjct: 417 RERGPFPEWEYSIWGP--------DATCARRSDGSRIRPQRL-------------LRNCN 455 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +APT TI+ I G S I+P + + + +N V + K+ + ++ Sbjct: 456 VTTVAPTGTISIIAGCSSGIEPLFAIAFWRYQADSRMLDINQDFVAQAKREGWYSPELME 515 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + G I + +P +++++ TA +I P W + + Q++ D A S + E + Sbjct: 516 RIADT-GHIHH-PDVPAEVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEAT 573 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 ++ Y A+ +G K R S + ST + + + P Sbjct: 574 PDQVREAYELAFRLGCKGITVYRDGSRENQVLSTGSTGKSESKPAAQSATTTPVELTPRP 633 >gi|253701670|ref|YP_003022859.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter sp. M21] gi|251776520|gb|ACT19101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M21] Length = 744 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 181/661 (27%), Positives = 305/661 (46%), Gaps = 80/661 (12%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345 L +L RY G +E F RVA +A + +K+ + +FY + Sbjct: 13 LTKNALTVLEKRYLKRDQTGKPLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYTM 72 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +++F F+ ++PTL N+G QLS+CF+ V D + IF +++ A++ K GG G ++ Sbjct: 73 MTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFS 132 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G + F++V + + QGG R+GA A L H D+ +F+ Sbjct: 133 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMC 192 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D+R+ ++ N + I + FMK V + +TLF+P + Sbjct: 193 K----SDQRQLNNFNISVGITEAFMKAVDADEEYTLFNPRDKQ----------------- 231 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K +A ++ +++ +E G P I F D N +P H+G + S+N C Sbjct: 232 ----------PAGKQNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + + D+DKL +RT+V LDNVI++N + +++ Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQ 337 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + ++R IGLG+MG+ L +L IPY S E+VE+ ++ M+FI+ +AS +LA+ R Sbjct: 338 IDEMTRSNRKIGLGVMGWADMLIMLGIPYGSAESVELGEKVMQFINDEGHAASRQLAKTR 397 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ +FKGS++D+ +RN+ Sbjct: 398 GAFPNFKGSVYDKPGAEP----------------------------------IRNATVTT 423 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ I S ++P + YV+ M + V VN K + + ++ + Sbjct: 424 IAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQRI 483 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 H G++ +I IP+ ++++ TA +I P I + Q+ D A S + E + + Sbjct: 484 AEH-GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATIE 542 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 ++ +YR A+ K R S S K + K A PV + T P + Sbjct: 543 DVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEAKA-AAPVHVEDKRTAKRERPKA 601 Query: 944 C 944 Sbjct: 602 L 602 >gi|163847312|ref|YP_001635356.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus aurantiacus J-10-fl] gi|222525156|ref|YP_002569627.1| ribonucleotide-diphosphate reductase subunit alpha [Chloroflexus sp. Y-400-fl] gi|163668601|gb|ABY34967.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chloroflexus aurantiacus J-10-fl] gi|222449035|gb|ACM53301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chloroflexus sp. Y-400-fl] Length = 822 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 173/661 (26%), Positives = 291/661 (44%), Gaps = 47/661 (7%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFY 343 + +L RY L G IE P+ F RVA +A + E+RA FY Sbjct: 10 NLTDIARTVLKKRYLLKNEHGDVIETPETMFWRVAETIAAVDARYGASAEQVEERAERFY 69 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +L++ +F ++PTL N+G QLS+CF+ + D+L I+ L+ A++ + GG G Sbjct: 70 HLMTQGYFEPNSPTLMNAGRPLGQLSACFVLPIDDNLTSIYETLKHQALIHQSGGGTGFS 129 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R + T G + G + F+ V N + A+ QGG R+GA L H D+ EF+ Sbjct: 130 FSRLRPRNDVVRSTMGVASGPVSFMDVYNHSTEAIKQGGTRRGANMGILRCDHPDILEFI 189 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D + + N + I D FM+ V ++ + L +P Sbjct: 190 TCKL----DTTKITNFNISVAITDAFMRAVERDEEYDLINPRTGLGQIASRDGL--KHPL 243 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 E G+ ++ A ++ ++ TG P + F D N +P H+G ++N Sbjct: 244 TGEVLVPAGQP---MRLRARMVFDLIVQCAHATGEPGLFFIDRANEYNPVPHLGEYEATN 300 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINCHT 642 C E L + VCNLGSINL + D++ L + + R LDNVID N + Sbjct: 301 PCGEQPLLAY----DVCNLGSINLGKFVTDAGTIDWESLRDVVHESTRFLDNVIDANHYP 356 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +E+ + + R IGLG+MG+ L L IPY S +A+++A + M FI + AS +LA Sbjct: 357 LEQITQLSQRIRRIGLGVMGWADMLVRLGIPYNSAQAIDLARQVMRFIDEESKVASEQLA 416 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +ERG + ++ S+W R + + R RL +RN N Sbjct: 417 RERGPFPEWEYSIWGP--------DATCARRPDGSRIRPQRL-------------LRNCN 455 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +APT TI+ I G S I+P + + + +N V + K+ + + ++ Sbjct: 456 VTTVAPTGTISIIAGCSSGIEPLFAIAFWRYQADTRMLDINQDFVAQAKREGWYSDELME 515 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + G I + +P ++++ TA +I P W + + Q++ D A S + E + Sbjct: 516 RIADT-GHIHH-PEVPASVQRVWVTAHDIAPEWHVRMQAAFQEYTDSAISKTINFPHEAT 573 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 ++ Y A+ +G K R S + ST P +D +P Sbjct: 574 PDQVREAYELAFRLGCKGITVYRDGSRANQVLSTGS-TGKSAEPAPASDQPVELKPRPVP 632 Query: 942 S 942 + Sbjct: 633 A 633 >gi|329888547|ref|ZP_08267145.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas diminuta ATCC 11568] gi|328847103|gb|EGF96665.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas diminuta ATCC 11568] Length = 599 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 200/679 (29%), Positives = 297/679 (43%), Gaps = 94/679 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L RD G + L DRY L E Q F RVA A + A Y+ Sbjct: 6 LDRTRDALLTEFGKKTLEDRYLL-----AGESYQDMFARVATAYA----DDADHAQRVYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL +V D L GI EN LA GG+G W Sbjct: 57 YMSKLWFMPATPVLSNGGADRGLPISCFLNSVNDSLDGIQNVWNENVSLASNGGGIGTYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 117 GGVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 175 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD RR+ +++ I D FM+ V + L SP Sbjct: 176 IRKPSGDFNRRSLNLHHGINITDAFMEAVRDGKPFDLISPK------------------- 216 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 +V + + A LW K+L + +TG P++ F D N + PQ V Sbjct: 217 --------NGEVRKTVDARNLWTKILEIRMQTGEPYLIFSDTVNRQMPQHQKDLGLSVKQ 268 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLC+EI L++ + V L + A ++ + I +R LDNV++ Sbjct: 269 SNLCSEIMLHTGLDHKGVERTAVCCLSSVNAETFLEWREEPRFIEDIMRFLDNVLEDFIT 328 Query: 642 TIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + S R++GLGLMGF S L + + S A + + A A Sbjct: 329 RAPSSMAAAVYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADKA 388 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S LA+E+G D + V Sbjct: 389 SRTLAEEKGPCP-------------------------------------DAADRGVME-- 409 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L + L ++ + Sbjct: 410 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLQDLLGEKGID 468 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 EA+ S + ++GS+ +++ + DD K I+ TAFE+D W+IE A+ R I QAQSLNL+ Sbjct: 469 TEAVWSSILENEGSVQHLDALSDDEKAIYKTAFELDQRWVIELAADRTGDICQAQSLNLF 528 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + + L ++ AW GLK+ YYLRS+S + Sbjct: 529 IPGDVNKWDLHMLHWSAWERGLKSLYYLRSKSVQRA--------AFAGAEDKKEEEIDPN 580 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + T EC CQ Sbjct: 581 QPDLFSIARTDYDECLACQ 599 >gi|85375154|ref|YP_459216.1| ribonucleotide-diphosphate reductase subunit alpha [Erythrobacter litoralis HTCC2594] gi|84788237|gb|ABC64419.1| ribonucleoside-diphosphate reductase, alpha subunit [Erythrobacter litoralis HTCC2594] Length = 681 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 205/679 (30%), Positives = 306/679 (45%), Gaps = 93/679 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G + L DRY L E Q F RVA A + ++ A Y+ Sbjct: 87 IDESRDVNLTEFGKETLIDRYLL-----PGEKFQDLFARVADAYA----DDQEHAQRLYD 137 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SC+L +V D L GI G EN LA GG+G W Sbjct: 138 YISRLWFMPATPVLSNGGTNRGLPISCYLNSVSDSLDGIVGTWNENVWLASKGGGIGTYW 197 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ Y++ H ++EEFL+ Sbjct: 198 GNVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYIDIHHPEIEEFLE 256 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R+ +++ I D FM+ V + A + L SP + Sbjct: 257 IRKPSGDFNRKALNLHHGVLITDAFMEAVREGAEFDLKSPKD------------------ 298 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V + A +L++K++ TG P+I F D N P+ H V + Sbjct: 299 ---------GSVRGTVDARSLFQKLVETRLATGEPYIVFADTVNRMMPKHHRDLGLKVST 349 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EITL + + L + +++ I +R LDNV ID Sbjct: 350 SNLCSEITLPTGVDHLGNDRTAVCCLSSLNLEKWDEWNGEKDFIEDVMRFLDNVLQDYID 409 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +AK S R++G+G+MGF S L ++P P A D+ + I A A Sbjct: 410 RAPDEMARAKYSASRERSVGMGVMGFHSFLQSKNLPLEGPMAKAWNDKMFKQIHAKANEA 469 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ LA+ERG + + Sbjct: 470 SMLLAKERGPCPDAEEMGAME--------------------------------------- 490 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S MAIAPTA+I+ ICG S I+P N+Y +SG F V N +L LK++ Sbjct: 491 -RFSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFIVKNPYLEKLLKKKSKD 549 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 A+ + + GS+ +++ + + K + T+FEID +L+E A+ R +IDQAQSLNL+ Sbjct: 550 STAVWNSILERGGSVAHLDFLTPEEKAVFKTSFEIDQRYLLEFAADRAPYIDQAQSLNLF 609 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + L ++ QAW G+K+ YYLRS+S G G + A D Sbjct: 610 IPADVDKWDLMMLHFQAWEKGIKSLYYLRSKSVQRA------GFAGGVEADNTKDAAQFE 663 Query: 936 HSLGIPSSCTSDTECEVCQ 954 S T EC CQ Sbjct: 664 LSAQAGEE-TDYEECLSCQ 681 >gi|197117589|ref|YP_002138016.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter bemidjiensis Bem] gi|197086949|gb|ACH38220.1| ribonucleoside diphosphate reductase, adenosylcobalamin-dependent [Geobacter bemidjiensis Bem] Length = 744 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 183/662 (27%), Positives = 308/662 (46%), Gaps = 82/662 (12%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345 L +L RY G +E F RVA +A + +K+ + +FYN+ Sbjct: 13 LTKNALTVLEKRYLKRDQTGKTLETASDMFRRVATAIAQADAVFDKKADIGALSDKFYNM 72 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +++F F+ ++PTL N+G QLS+CF+ V D + IF +++ A++ K GG G ++ Sbjct: 73 MTNFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFESVKYTALIHKSGGGTGFSFS 132 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G + F++V + + QGG R+GA A L H D+ +F+ Sbjct: 133 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIMDFIMC 192 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D+R+ ++ N + I + FMK V + +TL++P + Sbjct: 193 KA----DQRQLNNFNISVGITEAFMKAVDADEEYTLYNPRDKQ----------------- 231 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K +A ++ +++ +E G P I F D N +P H+G + S+N C Sbjct: 232 ----------PAGKQNARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + + D+DKL +RT+V LDNVI++N + +++ Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVIHGKVDWDKLKEVVRTSVHFLDNVIEVNNYPLQQ 337 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + ++R IGLG+MG+ L +L IPY S E+VE+ ++ M+FI+ +AS +LA+ R Sbjct: 338 IDEMTRSNRKIGLGVMGWADMLIMLGIPYGSEESVELGEKVMQFINDEGHAASRQLAKTR 397 Query: 706 GAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 GA+ +FKGS++D+ G P +RN+ Sbjct: 398 GAFPNFKGSVYDKLGAEP-----------------------------------IRNATVT 422 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I S ++P + YV+ M + V VN K + + ++ Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSYVRQVMDKNILVEVNPLFEKIAKTDGFYTDELMQR 482 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + H G++ +I IP+ ++++ TA +I P I + Q+ D A S + E + Sbjct: 483 IAEH-GTVQDISAIPEAVREVFVTAHDITPEEHITMQAAFQRHTDNAVSKTVNFPCEATI 541 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + ++ +YR A+ K R S S K + K A PV + T P Sbjct: 542 EDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSVGKKEEVKA-AAPVHVEDKRTGKRERPK 600 Query: 943 SC 944 + Sbjct: 601 AL 602 >gi|18466787|ref|NP_569594.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506103|emb|CAD09989.1| putative ribonucleoside-diphosphate reductase alpha subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 771 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 208/840 (24%), Positives = 336/840 (40%), Gaps = 101/840 (12%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G+ + ++ +V +++VS+ V +++DG++ L AL+ Sbjct: 1 MISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALV 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY++V AR L K+R++ + + + Sbjct: 61 KSAADLISPETPNYSQVAARLSLFKIRKDAFGQYDYPN-----------FYNHIVSNVSR 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV L + ++ L +K +RD F Y L +Y + G+ E PQ Sbjct: 110 GVYDEDLLKYYSQEEIAELGVYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQL 169 Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 +M V M L + + FY++ S+F TP + T Q SSC L Sbjct: 170 YMLVGMCLFQNWEDGCAGKTRLEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 230 EAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTA 289 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA A+ WH++VE L L+ N G + R ++ I L +R+ Sbjct: 290 VKSCSQGGVRGGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLV 349 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 +N TLFSP +V L+D + +FE Y YE E + I AV L+ ++ Sbjct: 350 RNENITLFSPHDVPGLYDAFFVDQDKFEELYLKYEAD----ESIRKKSIPAVDLFSTLMQ 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNS--------SSEETAVCNL 602 TG +I D N VH SNLC EITL + S+ E A+C L Sbjct: 406 ERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDSNGEIALCTL 465 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 + NL A D L AV LD+++D + + A+ R++G+G+ Sbjct: 466 SAFNLGAIRT-----LDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTN 520 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 F L Y+ ++ E+ E I ++ + AS LA+ +GA F + + QG P Sbjct: 521 FAYYLAKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLP 580 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 +D + + ++PW+EL+ R++ G+RNS A P T + I + I Sbjct: 581 VDHYRKTLDT--NPETSFELKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGI 638 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P + VKS+ G +V LK Sbjct: 639 EPPRGPVSVKSSKDGIVKMVVPDFAQ--------------------------------LK 666 Query: 843 KIHATAFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWL 894 + +++ D + + QK+ DQA S N D+ KL A+ Sbjct: 667 DQYEYLWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDLLFAYQ 726 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953 G+KT YY +T G + + V++P+++ + EC+ C Sbjct: 727 QGVKTLYY----------HNTRDGAGKRDDDDQVSEPSAAEVVEP-------EDECDGAC 769 >gi|78222511|ref|YP_384258.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter metallireducens GS-15] gi|78193766|gb|ABB31533.1| Ribonucleotide reductase large subunit [Geobacter metallireducens GS-15] Length = 742 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 178/662 (26%), Positives = 301/662 (45%), Gaps = 84/662 (12%) Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYNL 345 +L RY +G +E P F RVA +A+ + +K+A +FY+L Sbjct: 13 LSKNARTVLEKRYLKRDTDGRVLETPADMFRRVAEAIAVADRNFDKKADTKALAQKFYDL 72 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++SF F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 73 MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFS 132 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T+G S G I F++V + + QGG R+GA L H D+ +F+ Sbjct: 133 RLRPANDVVRSTSGISSGPISFMRVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIMC 192 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + DD++ ++ N + + + FM+ V ++A + L +P + Sbjct: 193 K----DDQKHLNNFNISVGLTEAFMEAVERDADYDLRNPRD------------------- 229 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K ++A ++ +++ ++ G P I F D N +P H+G + S+N C Sbjct: 230 --------GKPCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHIGEIESTNPC 281 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL N D+ +L IR V LDNVI++N + + + Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVNNGDVDWKRLREVIRLGVHFLDNVIEVNNYPLPQ 337 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++R IGLG+MG+ L LL IPY+SPEA+ + ++ M FI+ + S ELA R Sbjct: 338 INDMTRSNRKIGLGVMGWADMLILLGIPYSSPEAISLGEKVMRFINDEGHAYSRELAAVR 397 Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 GA+ +F GS +D G P +RN+ Sbjct: 398 GAFPNFVGSTFDRPGEGP-----------------------------------IRNATVT 422 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I S ++P + +V+ + + V VN + + + E ++ Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSFVRQVLDKNILVEVNPIFEEIARDQGFYSEELMQK 482 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + H G++ ++ IP+D++K+ TA +I P IE + QK+ D A S + + Sbjct: 483 IAQH-GTVHDLAEIPEDIRKVFVTAHDITPEDHIEMQAAFQKYTDNAVSKTVNFPNAATI 541 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 ++++ +YR A+ + K R S ST + + V P Sbjct: 542 EEVEKVYRLAYKLECKGVTIYRDGSRDEQVLSTGAKEEKE---KVVQTEEKRAVKRDRPK 598 Query: 943 SC 944 + Sbjct: 599 AL 600 >gi|70607111|ref|YP_255981.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639] gi|68567759|gb|AAY80688.1| ribonucleotide reductase [Sulfolobus acidocaldarius DSM 639] Length = 837 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 195/828 (23%), Positives = 352/828 (42%), Gaps = 116/828 (14%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG-LSESDLETAL 202 K+K++ +G F ++++ + L +V +L + +N + + L + Sbjct: 12 KIKVLKRNGGYEQFKAEKVFSKLGS----LPEVVMDGILQDVLQNSKENAIDTRALADIV 67 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + PN + R++L ++ V Sbjct: 68 ERNLIEHSLEYPNLMDLAKRYVLARIYNHVYGK--------------------------- 100 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAF 320 +FD RD Y L++L RY L IE PQ Sbjct: 101 --------GKWKEFD----------SRDLLISYNALKVLEARYLLKDPNTLRYIETPQMM 142 Query: 321 FMRVAMGLA-------LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA +A E + ++ + Y ++S+ F+ +TP L NSGTR LS+CF+ Sbjct: 143 FRRVARHIANVEKLYGKDEKQVKEIEDKLYEMMSNLKFIPNTPALMNSGTRLGILSACFV 202 Query: 374 TTVPDDL-----YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 V D + GI+ AL+ A++ + GG G D++ +R G + T G + G + F+ Sbjct: 203 IPVRDAMSTPNGDGIYDALRAMALVHQQGGGTGFDFSELRPKGDIVASTAGVASGPVSFM 262 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 ++ + + V QGGKR+GA + WH DV++F+ + D + N + + D Sbjct: 263 RIFDVSTDVVKQGGKRRGANMGVMHAWHADVQDFIRAKTGELRD-THLQNFNISVGVYDY 321 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ-------------------- 528 FM V + L +P + + A + Sbjct: 322 FMNAVERGEAVPLINPRKTRIPGKDWDYYMTNARGYMHDESVQEYILKELEEKGGSVYLD 381 Query: 529 ------------ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 E + + ++A L+ +++ +++G P + F D N R P ++ Sbjct: 382 ESRIITVDEALVIAEKENAIVQWVNARQLFDEIVKGAWDSGDPGLLFIDEINRRHPVWYI 441 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVL 632 G ++++N C E L CNLGSI+L D+D L I+ VR L Sbjct: 442 GKINATNPCGEEPLLP----WESCNLGSISLEKFVVEKDGKMSIDWDGLVEAIKYGVRFL 497 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNVID N + +++ +++ R +GLG+MG L L IPY S +A+ I+ + +FI + Sbjct: 498 DNVIDANRYPLKQIEEATKKTRKVGLGVMGLARMLIKLGIPYDSVDALYISYQLAKFIYY 557 Query: 693 HAISASVELAQERGAYS---------SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 HA+ S++LA+E+G++ ++ + + + +I + R Sbjct: 558 HALKTSIDLAKEKGSFPAYDPYYYHDIWESARDFGSLLEVSNIKDKPSDYVKKLTEVVDR 617 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 L + LK+ G+RNS +++APT TI+ I G S SI+P + +V++ G F ++ Sbjct: 618 LDFSLLKEERIKFGLRNSTVVSVAPTGTISIIAGTSSSIEPLFALAFVRNVAVGKFIEID 677 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L++ +L D ++ + G++ IP +KK+ TA E+ P + + + Sbjct: 678 PLFLEYLRKYELDDPEVVQKIAET-GTVAENPFIPRTMKKLFRTAHEVPPEYHVLHQAMW 736 Query: 864 QKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 Q+W D S + L E + ++ +Y AW +G+K R RS + Sbjct: 737 QQWNDSGTSKTINLKSEEPPETVEKVYMLAWKLGIKGVTVYRDRSKSQ 784 >gi|294013208|ref|YP_003546668.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium japonicum UT26S] gi|292676538|dbj|BAI98056.1| ribonucleoside-diphosphate reductase alpha chain [Sphingobium japonicum UT26S] Length = 731 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 195/678 (28%), Positives = 293/678 (43%), Gaps = 97/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY L E Q F +A + A Y+ Sbjct: 142 DASRDALLTDFGKDTLQDRYLL-----PGESYQDLF----ARVAAAYADDADHAQRVYDY 192 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT SC+L +V D L GI EN LA GG+G W Sbjct: 193 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 252 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 253 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 311 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM+ V + L SP + Sbjct: 312 RKTSGDFNRKALNLHHGVLLTDEFMEAVRDGKEFALRSPKDQ------------------ 353 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V ++A AL++K++ + TG P+I F D N P+ H V +S Sbjct: 354 ---------SVRGSVNARALFQKLVEVRLATGEPYIVFNDTVNRTMPKHHRDLGLKVSTS 404 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + ++ + +R LDNV ID Sbjct: 405 NLCSEITLPTGRDHIGNDRTAVCCLSSLNLETWDEWKDDRQFVEDVMRFLDNVLQDYIDR 464 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++GLG+MGF S L +P+ A + ++ AS Sbjct: 465 APPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHVNEKVNEAS 524 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 ++LA ERG D+ + R Sbjct: 525 MQLAVERGPCP--------------DAADMGVMER------------------------- 545 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 S MAIAPTA+I+ ICG S I+P N+Y +SG F V N +L L + Sbjct: 546 -FSCKMAIAPTASISIICGGASACIEPIPANIYTHKTLSGSFAVKNPYLEKLLVAKAKDS 604 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 A+ + + GS+ +++ + + K + T+FEID WL+E A+ R +IDQAQSLNL++ Sbjct: 605 TAVWNSILEKGGSVQHLDFLSQEEKDVFKTSFEIDQRWLLELAADRTPYIDQAQSLNLFI 664 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ +AW +G+K+ YYLRS+S A V N+ Sbjct: 665 PADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRA-----------GFAGGVEADNTIDA 713 Query: 937 SLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 714 PKFEIGETTDYDECLACQ 731 >gi|254303615|ref|ZP_04970973.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323807|gb|EDK89057.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 755 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 233/843 (27%), Positives = 383/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACEGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + + +E +++ V R L+ + REV + F + I + V Sbjct: 66 AVAMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L +A + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLSYTEEELNQIAQLIDVNRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172 Query: 322 MRVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E + + EFYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLALNEKAGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEEGNTSIRRSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + ++L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------EELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLI 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|254455714|ref|ZP_05069143.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082716|gb|EDZ60142.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 645 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 200/696 (28%), Positives = 290/696 (41%), Gaps = 100/696 (14%) Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL 330 + D + + +D G L DRY H E Q F RVA A Sbjct: 38 TELFQNDKGIIIK-IDRSKDANLTDFGKATLKDRYLGHN-----ESFQDLFARVASSYA- 90 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN 390 + A YN +S+ FM +TP L N GT+ SCFL D L GI EN Sbjct: 91 ---DDNLHAQRIYNYISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLGGILDLWSEN 147 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 LA GG+G+ W +R +G I GK+ G+IPF+KV + +A++QG R+G+ Sbjct: 148 VWLAAKGGGIGSYWGNLRSIGEKIGKV-GKTSGIIPFIKVMDSLTMAISQGSLRRGSAAC 206 Query: 451 YLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H ++EEF+++R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 207 YLPIDHPEIEEFIEMRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPAD--- 263 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 + + ISA LW ++LT ETG P+I + D N Sbjct: 264 ------------------------GTIQQTISARNLWIRLLTARIETGEPYIIYIDTVNR 299 Query: 570 RSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 PQ H V +SNLC+EITL + ++ L + ++ I Sbjct: 300 LIPQHHKLANLTVKTSNLCSEITLPTGIDKDGHDRTAVCCLSSLNLEKYDEWKDDPDMIG 359 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +R LDNV+ + K R++GLG+MGF S L IP S A Sbjct: 360 DVMRFLDNVLSDFINKAPDQFKDAKYSAGRERSVGLGVMGFHSFLQKNRIPLESVMAKSW 419 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + + I AS +LA+ERGA Sbjct: 420 NKKIFKQIDAQVNQASKDLAEERGACP--------------------------------- 446 Query: 743 RLPWDELKKRVKTIGM--RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDF 799 G R SN AIAPTA+I+ ICG S ++P N Y +SG F Sbjct: 447 ---------DAAEYGYQERFSNKTAIAPTASISIICGGASPGVEPIAANSYTHKTLSGSF 497 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V N +L L+ D+ S + + GS+ +++ + D K + TAFE++ W+IE Sbjct: 498 NVRNRYLEEILESHGKNDDETWSTITTNQGSVSHLDFLTDLEKDVFKTAFELNQNWIIEL 557 Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + R +I QAQS+NL+L + K+L I+ AW GLK+ YY RS+S E Sbjct: 558 SGDRTPFISQAQSVNLFLPADVHKKELHKIHFDAWKKGLKSLYYCRSKSIQRAENINDAK 617 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + V + EC CQ Sbjct: 618 STDIMANVYKNKATKTEEPE--------YEECLSCQ 645 >gi|197247241|gb|AAI65359.1| Rrm1 protein [Danio rerio] Length = 509 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 184/512 (35%), Positives = 282/512 (55%), Gaps = 21/512 (4%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLET 200 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 10 GTMHVIKRDGRQERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDT 69 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + TL K P+YA + AR + L +E +K M+ LY Sbjct: 70 LAAEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNS 121 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 ++ + L + + Y+RDF++ + G + L Y L ING E PQ Sbjct: 122 RHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHM 181 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 MRV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD Sbjct: 182 LMRVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDS 238 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+ Sbjct: 239 IEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVD 298 Query: 440 QG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG KR GA YLE WH D+ +FL+L+KNTG + +R D+ A WIPDLFMKRV N Sbjct: 299 QGGNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGD 358 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W+L P++ L + +G+EFE Y YE+ E + R + A LW ++ ETG Sbjct: 359 WSLMCPNDCPGLDECWGEEFEKLYAKYEQ-----EGRAKRVVKAQQLWYAIIESQTETGT 413 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFD 617 P++ +KD CN +S QQ++G + SNLCTEI +S++E AVCNL SI L + + FD Sbjct: 414 PYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFD 473 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 + KLAS + V+ L+ +IDIN + ++ +S Sbjct: 474 FQKLASVTKVIVKNLNKIIDINYYPVKDGCRS 505 >gi|294784668|ref|ZP_06749956.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_27] gi|294486382|gb|EFG33744.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_27] Length = 755 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 233/843 (27%), Positives = 385/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACEGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + + +E ++A V R L+ + REV + + F + I + + Sbjct: 66 AVAMTTFEESDWAYVAGRLLMMEAEREVFHS-------------RGFSYGNFPKTIRKMI 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L +A + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLSYTEEELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + + +FYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYIIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNEP 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + D+L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++++T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQRNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|304320879|ref|YP_003854522.1| ribonucleotide-diphosphate reductase subunit alpha [Parvularcula bermudensis HTCC2503] gi|303299781|gb|ADM09380.1| ribonucleotide-diphosphate reductase alpha subunit [Parvularcula bermudensis HTCC2503] Length = 628 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 196/679 (28%), Positives = 305/679 (44%), Gaps = 97/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G + DRY L E Q F RVA + A Y+ Sbjct: 38 VDRSRDALLTDFGKTTMDDRYLLEG-----ESYQDMFARVATAYG----DDADHAQRIYD 88 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL V D L GI G EN LA GG+G W Sbjct: 89 YISKLWFMPATPVLSNGGASRGLPISCFLNAVDDSLDGIVGTWNENVWLASNGGGIGTYW 148 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 149 GGVRSIGESVKGH-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAACYLDIHHPEIEEFLE 207 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM+ V ++ + L SP Sbjct: 208 IRKASGDFNRKSLNLHHGINITDAFMEAVARDEEFGLLSPKT------------------ 249 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 +V R ++A LW+K+L + +TG P++ F D N + V + Sbjct: 250 ---------GEVLRTVNARKLWQKILEIRLQTGEPYLVFADTVNRSMAKHQRDLGLKVST 300 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLC EI L++ + L + A F++ + I +R LDNV++ + Sbjct: 301 SNLCAEIMLHTGEDHLGQERTAVCCLSSVNAEKYFEWKDEPTFIEDVMRFLDNVLEDFIN 360 Query: 642 TIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 S R++GLGLMGF S L + +P+ S A + + I A +A Sbjct: 361 RAPPEMAKAVYSARRERSVGLGLMGFHSFLQQMGVPFESAMAKSWNIKLFKHIRMGADAA 420 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SV LA+ERGA D ++ +K Sbjct: 421 SVTLAEERGAC-------------------------------------LDAAERGIKQ-- 441 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ MAIAPTA+I+ ICG S I+P N+Y +SG FTV N L L+++ Sbjct: 442 -RFSHKMAIAPTASISIICGGASPCIEPIPANVYTHKTLSGSFTVKNRALEEMLEEKGCN 500 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 D+ + + ++GS+ +++ + D+ K + TAFEID W+++ A+ R +I Q+QS+N++ Sbjct: 501 DDDTWASILENEGSVQHLDCLTDEEKAVFKTAFEIDQRWVVDLAADRAPFICQSQSVNVF 560 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + + L ++ AW G+K+ YY RS+S + + +G A Sbjct: 561 LPGDINKWDLHMLHWTAWEKGVKSLYYCRSKSVQRTQFAGGRGAAEIDAASAAALAER-- 618 Query: 936 HSLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 619 ---------TDYDECLACQ 628 >gi|327399024|ref|YP_004339893.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hippea maritima DSM 10411] gi|327181653|gb|AEA33834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hippea maritima DSM 10411] Length = 725 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 182/644 (28%), Positives = 286/644 (44%), Gaps = 81/644 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEF 342 L +L RY +G+ IE P+ RVA +A + EK EF Sbjct: 1 MRLSENALIVLKSRYLQKDSDGNIIETPEQLIERVAKAIAKADENYSATKEEIEKTTNEF 60 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 +++S F+ +TPTL N+G QLS+CF+ + D + IF A++ A++ K GG G Sbjct: 61 MDVMSELKFLPNTPTLVNAGRPLGQLSACFVLPINDSMDSIFDAVKATALIHKSGGGTGF 120 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 ++ +R + T G S G + F+KV + A+ QGG R+GA L H D+ +F Sbjct: 121 SFSRLRPKNDIVSSTMGVSSGPVSFMKVFDCATEAIKQGGVRRGANMGILRVDHPDILDF 180 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 + + D + N + I + F+ + + + L +P Sbjct: 181 IHCK----DKEGEFSNFNISVAITNKFLDALKNDEEYELINPR----------------- 219 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ-QHVGVVHS 581 +V K+ A +W ++ ++G P I F D N + P + VG + S Sbjct: 220 ----------NKEVVGKLKASFVWDEIAKSAHKSGEPGIIFIDRINEKHPLSKEVGEIES 269 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 +N C E L CNLGSINL D+D L T+ TAV LDNVID+N + Sbjct: 270 TNPCGEQPLLPF----ESCNLGSINLGKFVKGKSIDWDNLKKTVFTAVHFLDNVIDVNIY 325 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 ++K +++ +R +GLG+MGF L L IPY S EA+++A++ M FI + AS EL Sbjct: 326 PLKKIEENTKKNRKVGLGVMGFADMLIDLGIPYDSKEAIKLAEDVMCFIQKISKEASSEL 385 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A++RG + ++K S++ + P MRN+ Sbjct: 386 AKKRGNFPNYKYSIYSKENIP-----------------------------------MRNA 410 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 IAPT +I+ I S I+P + Y K + G V L N LK R ++ E + Sbjct: 411 TTTTIAPTGSISMIADASSGIEPIFALAYYKQVLDGKRLPYVYERLFNVLKDRGIYTEKL 470 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + + GS+ IE IP+D++K+ TA +I I+ + QK+ D A S + + Sbjct: 471 AERIIDNRGSLKGIEEIPEDIRKLFVTAMDITYKAHIDIQAAFQKYTDNAVSKTINMPNS 530 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 + + Y A+ GLK R S K + KL Sbjct: 531 ATVVDVKEAYNYAYKNGLKGITVYRDGSRQEQVLVVAKKEEKKL 574 >gi|34763896|ref|ZP_00144798.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886330|gb|EAA23603.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 755 Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 232/843 (27%), Positives = 384/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACEGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + + +E +++ V R L+ + REV + + F + I + Sbjct: 66 AVAMTTFEESDWSYVAGRLLMMEAEREVFHS-------------RGFSYGNFPKTIRKMT 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L +A + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLSYTEEELNQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + + +FYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVEIVKKFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEENGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + D+L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +G+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TVGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYNTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|307295358|ref|ZP_07575197.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium chlorophenolicum L-1] gi|306878861|gb|EFN10080.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobium chlorophenolicum L-1] Length = 645 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 197/678 (29%), Positives = 292/678 (43%), Gaps = 97/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD G L DRY L E Q F +A + A Y+ Sbjct: 56 DDSRDALLTDFGKDTLQDRYLL-----PGESYQDLF----ARVAAAYADDADHAQRVYDY 106 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S FM +TP L N GT SC+L +V D L GI EN LA GG+G W Sbjct: 107 ISRLWFMPATPVLSNGGTGRGLPISCYLNSVDDSLEGIVNTWNENVWLASRGGGIGTYWG 166 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VRG+G + NGK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL++ Sbjct: 167 NVRGIGEPVGL-NGKTSGIIPFVRVMDSLTLAISQGSLRRGSAACYLDISHPEIEEFLEI 225 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ + D FM V + L SP + Sbjct: 226 RKTSGDFNRKALNLHHGVLLTDEFMAAVRDGKEFALRSPKDQ------------------ 267 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V ++A AL++K++ + TG P+I F D N P+ H V +S Sbjct: 268 ---------SVRGSVNARALFQKLVEVRLATGEPYIVFNDTVNRMMPKHHRDLGLKVSTS 318 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----IDI 638 NLC+EITL + + L + ++ + +R LDNV ID Sbjct: 319 NLCSEITLPTGRDHIGNDRTAVCCLSSLNLETWDEWKDDKQFVEDVMRFLDNVLQDYIDR 378 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +AK S R++GLG+MGF S L +P+ A + IS A AS Sbjct: 379 APPEMARAKYSASRERSVGLGVMGFHSFLQARGLPFEGAMAKSWNLRIFKHISEKAAEAS 438 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 ++LA ERG D+ + R Sbjct: 439 MQLAVERGPCP--------------DAADMGVMER------------------------- 459 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 S MAIAPTA+I+ ICG S I+P N+Y +SG F + N +L L + Sbjct: 460 -FSCKMAIAPTASISIICGGTSACIEPIPANIYTHKTLSGSFAIKNPYLEKLLVAKAKDS 518 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 A+ + + GS+ +++ + + K T+FEID WL+E A+ R +IDQAQSLNL++ Sbjct: 519 TAVWNSILEKGGSVQHLDFLSQEEKDTFKTSFEIDQRWLLELAADRTPYIDQAQSLNLFI 578 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ +AW +G+K+ YYLRS+S A V N+ Sbjct: 579 PADVEKWDLLMLHYRAWELGIKSLYYLRSKSVQRA-----------GFAGGVEADNTIDA 627 Query: 937 SLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 628 PKFEIGETTDYDECLACQ 645 >gi|157964543|ref|YP_001499367.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia massiliae MTU5] gi|157844319|gb|ABV84820.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia massiliae MTU5] Length = 617 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 199/680 (29%), Positives = 298/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + G IL DRY + E Q F RV+ A ++ A + Y Sbjct: 23 INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 73 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L I EN LA GG+G+ W Sbjct: 74 YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 133 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR + I G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D Sbjct: 134 GNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 192 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 193 IRRPTGGDVNRKALNIHHGIAITDKFMKAVENNTDFDLVSPAT----------------- 235 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV K+ A LW K+LT ETG P++ F D N P+ H V Sbjct: 236 ----------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 285 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + ++ I + + LDNV++ Sbjct: 286 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFI 345 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + S R++GLG+MGF S L + +P S A + E+IS A Sbjct: 346 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADK 405 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+E+ +E+GA D++ + R Sbjct: 406 ASIEIGKEKGACP--------------DALDAGSNER----------------------- 428 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L L+++ Sbjct: 429 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 485 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN+ Sbjct: 486 NNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 545 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L S K L+ I+ +AW G+K+ YY RS S +K + + + + + Sbjct: 546 FLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKADFKDLEEQNDKLA 605 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + EC CQ Sbjct: 606 EVG--------NYEECLACQ 617 >gi|237742882|ref|ZP_04573363.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 4_1_13] gi|229430530|gb|EEO40742.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 4_1_13] Length = 755 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 237/843 (28%), Positives = 386/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + ++ +E ++A V R L+ + REV + F + I + V Sbjct: 66 AVSMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L + + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + K EFYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVNDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNEA 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---SNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEEEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + D+L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEMFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLI 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T +S + EC Sbjct: 722 TAWKEGCKSVYYIRT-----IQKNT--------------------------NSISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|27882097|gb|AAH44356.1| Rrm1 protein [Danio rerio] Length = 498 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 184/510 (36%), Positives = 282/510 (55%), Gaps = 21/510 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AEIAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSEVMEDLYNYVNPLNSRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ + G + L Y L ING E PQ M Sbjct: 113 SPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSVGIH---KEDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ +FL+L+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P++ L + +G+EFE Y YE+ E + R + A LW ++ ETG P+ Sbjct: 350 LMCPNDCPGLDECWGEEFEKLYAKYEQ-----EGRAKRVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S++E AVCNL SI L + + FD+ Sbjct: 405 MLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVTSERTFDFQ 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 KLAS + V+ L+ +IDIN + ++ +S Sbjct: 465 KLASVTKVIVKNLNKIIDINYYPVKDGCRS 494 >gi|19703450|ref|NP_603012.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713528|gb|AAL94311.1| Ribonucleoside-diphosphate reductase alpha chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 755 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 235/843 (27%), Positives = 385/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + T+ +E ++A V R L+ + REV + F + I + Sbjct: 66 AVTMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMT 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L +A + RD ++Y G +L +RY + +G E+PQ F Sbjct: 113 ELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMLVNRYLIKYDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + + EFYN LS +TP L N LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + ++L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASTLLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E+ V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|295698299|ref|YP_003602954.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Riesia pediculicola USDA] gi|291157020|gb|ADD79465.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus Riesia pediculicola USDA] Length = 764 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 184/790 (23%), Positives = 316/790 (40%), Gaps = 73/790 (9%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 + +G L + K+++ ++ + GLQ +S + + Y+ + + +I +S Sbjct: 7 VTKRNGDLEKIDLKKIKRLITLSADGLQGISISKIQDLSCIQFYNKIQTKLIHQIIIKTS 66 Query: 207 RTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 LI K P+Y ++AR + LR++ ++ + G Sbjct: 67 ADLISTKIPDYQYLSARLAISYLRKDAYGEFNPPKL-----------YQHVKNMVSIGKY 115 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323 L E + + + + RD F Y ++ L +Y + G E Q ++ Sbjct: 116 DYRLLEDYSVEEFQKMDQFINHLRDMNFCYAAVKQLEGKYLVKDRVTGKIYESAQFLYIL 175 Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 V+ L + + FY+ +S+F TP + T Q SSC L D L Sbjct: 176 VSACLFSIYPKDVRLIYVKRFYDAISTFKISLPTPIMAGIRTPTRQFSSCVLIECDDSLD 235 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I G+G + +R +G+ I G IPF K + +QG Sbjct: 236 SINATASSIVKYVSQRAGIGINAGRIRAIGSPIRQGEAFHTGCIPFYKYFQAAVKSCSQG 295 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R GA + WH++VE L L+ N G + R ++ A I L +R+ + TL Sbjct: 296 GIRGGAATIFYPIWHLEVESLLVLKNNRGVESNRVRHLDYAVQINKLMYERLIRGEEITL 355 Query: 502 FSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 FSP +V DL+ + +FE Y+ YE + + +++ AV L+ KM+ TG Sbjct: 356 FSPSDVPDLYSCFFSDQDKFENLYKKYELDQNIRK----KRVKAVDLFSKMMQERSSTGR 411 Query: 559 PWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFANN 614 +I D CN SP + SNLC E+ L + G I L Sbjct: 412 TYIQNVDHCNTHSPFDSKIAPIRQSNLCLEVLLPTHPLYNINDQEGEIALCTLSAFNLGE 471 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 ++L VR LD ++D + I AKKS+ + R +G+G++ + L H+ Y Sbjct: 472 IRSLEELEDLSDLIVRALDALLDYQDYPILAAKKSSISRRTLGIGVINYAYYLAKNHVKY 531 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 + A + ++ E I ++ + AS +LA+E+GA S F + + +G+ PID+ + Sbjct: 532 SDSSANNLTHKTFEAIQYYLLKASNQLAKEKGACSWFHHTNYSKGILPIDNY----KKSL 587 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + + W L++R+K G+RNS A+ P+ T + I + I+P + +K + Sbjct: 588 DHLTSEPLHYDWKSLRERIKKYGLRNSTLSAVMPSETSSQISNATNGIEPPRGFMSIKVS 647 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G + D LKK + +E+ Sbjct: 648 KDGILRQIVPEY--------------------------------DRLKKKYELLWEMPNN 675 Query: 855 -WLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKTTYY--LR 904 ++ QK++DQ+ S N ++ L A+ G+KT YY R Sbjct: 676 IGYLQLVGIIQKFVDQSISANTNYDPSKFDRNQIPMNHLLKDLLLAYKYGIKTLYYHNTR 735 Query: 905 SRSATSVEKS 914 S EKS Sbjct: 736 DGSDKIQEKS 745 >gi|254418479|ref|ZP_05032203.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas sp. BAL3] gi|196184656|gb|EDX79632.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas sp. BAL3] Length = 629 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 197/679 (29%), Positives = 299/679 (44%), Gaps = 94/679 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G + L DRY L E Q F RV+ + + A Y+ Sbjct: 36 VDRSRDALLTDFGKKTLEDRYLL-----AGESYQDMFARVSTAFS----DDADHAQRLYD 86 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL V D L GI EN LA GG+G W Sbjct: 87 YMSRLWFMPATPVLSNGGADRGLPISCFLNAVGDSLDGIQSVWNENVALASNGGGIGTYW 146 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G GK+ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 147 GGVRSIGEKVKG-AGKTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 205 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ + D FM+ V A + L SP + Sbjct: 206 IRKPSGDFNRKSLNLHHGVNVTDEFMEAVKTGATFDLKSPKD------------------ 247 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V + + A +LW K+L + +TG P++ F D N + V Sbjct: 248 ---------GAVIKTVDARSLWTKLLDIRMQTGEPYMIFSDTVNRQMAPHQRDLGLKVKQ 298 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLC EI L++ + V L + A ++ + I +R LDNV++ Sbjct: 299 SNLCAEIMLHTGRDHLGVDRTAVCCLSSVNAETFLEWREEPRFIEDIMRFLDNVLEDFIR 358 Query: 642 TIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 K S R++GLGLMGF S L + + S A + + A A Sbjct: 359 RAPPEMKAAVYSAKRERSVGLGLMGFHSFLQGQGVAFESAMAKSWNMRLFKHLRREADKA 418 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S LA+E+G L AE R + Sbjct: 419 SRLLAEEKGPC-------------------LDAEERGVME-------------------- 439 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L L ++ + Sbjct: 440 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLERLLDEKGIN 498 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 EA+ + + H+GS+ +++ + +D K I+ TAFE+D W++E A+ R I QAQSLNL+ Sbjct: 499 TEAVWNSILEHEGSVQHLDALNEDEKGIYKTAFELDQRWVVELAADRAPEICQAQSLNLF 558 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + + L ++ AW G+K+ YYLRS+S G + + Sbjct: 559 IPGDVNKWDLHMLHWSAWERGVKSLYYLRSKSVQRA------AFAGAEDKAEAVIDPNQP 612 Query: 936 HSLGIPSSCTSDTECEVCQ 954 +P T EC CQ Sbjct: 613 DLFSMPK--TDYDECLACQ 629 >gi|119872039|ref|YP_930046.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum islandicum DSM 4184] gi|119673447|gb|ABL87703.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum islandicum DSM 4184] Length = 844 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 194/872 (22%), Positives = 350/872 (40%), Gaps = 103/872 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ G L F+ ++L + + +A S + V E N+ ++ +L + Sbjct: 3 TVVKLSGLLEPFSLEKLRLSIRQAASEVG----VEVDGEVEININRDVNSWELADLVQLE 58 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 P A+V LL ++ +EV + K + Y + Sbjct: 59 LLKRAIDRPELAEVAKSHLLGRIYKEVFGKDFLKHKSGYLERALARYRQ----------- 107 Query: 266 ARLLHESMMDFDLVYLANDLKY--ERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFF 321 L ++ + + L + + D + Y L++ + Y L R+ E P Sbjct: 108 --LAEAGLLKEESLRLLEAFEPRPDFDRSLSYNALRLFTNGNYALRGGDFRLAETPSMAA 165 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 RVA +A + A +Y+ ++S + ++P FN+ T+ +SCF V D L Sbjct: 166 WRVATAVA----RDVETARRYYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLS 221 Query: 382 G--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 I+ AL + ++ + GG+G D++ +R G + G+ G + G + F+K+ + Sbjct: 222 SLSHPGRFCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMKLFDT 281 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR- 492 + QGGKR+GA L WH DV +F+ + D + N + ++ D FM++ Sbjct: 282 NVEVIKQGGKRRGAQMGTLHVWHPDVRKFIKAKTGELKDA-HLQNFNISVFVDDAFMEKA 340 Query: 493 --VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + ++ + L +P L K E + ++A G + A L+R++ Sbjct: 341 LGLDKDPKYPLVNPR--IYLERTGRKPVEETRVSPPQEAVAG------WVDARELFREIA 392 Query: 551 TMLFETGHPWITFKDPCNIRSPQ----------QHVGVVHSSNLCTEITLNSSSEETAVC 600 +++G P + +KD N +P + + + N C+E N VC Sbjct: 393 EGAWDSGDPGVIYKDNLNASNPLLGEEIEVAGHRFRYIWRAVNPCSETHQNPF----EVC 448 Query: 601 NLGSINLLAHFANN----------QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 NL INL+ D++ LA R R LD+ ID + IE + N Sbjct: 449 NLTHINLVKFARECAGKTFEEKLACIDWEGLAEAARLGTRFLDDAIDRSYTGIEVIDEMN 508 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R GLG+MGF L L IPYAS EAVE+ + M +I +A+ S ELA+ERG + Sbjct: 509 RATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMAWIYVNALDESAELARERGPFKF 568 Query: 711 FKGSLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI----------- 756 F+ S + +G P R + A R D L++ Sbjct: 569 FEKSAYARGEIPVLKFQDYVWGRWERVKGAFPPELREAGDRLREITMRTREWLRPRLEAL 628 Query: 757 ------GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G+RNS ++IAPT + + G + ++P + ++++ G V L Sbjct: 629 REKVKGGVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFIRNVTVGTLIEYYWPAVEWL 688 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + R LW + ++ G + + +P+++K + ATA EI +W + + Q+W+DQ Sbjct: 689 RARGLWTPQVRKTVEET-GMLKDAP-LPEEVKHLFATAMEIGWLWHVLMQASAQQWVDQG 746 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTLKGVD 920 S + + + + + + AW +G+K R +S + K L Sbjct: 747 ISKTINMPANAPKEDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLADTK 806 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950 + + + + D C Sbjct: 807 IIVKPIALDSAIEEVAEKAKLKALEEGKDPYC 838 >gi|296329017|ref|ZP_06871524.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153910|gb|EFG94721.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 755 Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 234/843 (27%), Positives = 385/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + T+ +E ++A V R L+ + REV + F + I + Sbjct: 66 AVTMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMT 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L +A + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELELYDERLLSYTEEELHQIAQLIDINRDMVYDYAGANMFVNRYLIKYDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + + EFYN LS +TP L N LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPDGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + ++L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------EELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ +N + W+E+ V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDINSKFKDEWNEVFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|260497962|ref|ZP_05816078.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_33] gi|260196470|gb|EEW94001.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_33] Length = 755 Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 233/843 (27%), Positives = 383/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + ++ +E +++ V R L+ + REV + F + I + V Sbjct: 66 AVSMTTFEESDWSYVAGRLLMMEAEREVFHSRGFSYGD-------------FPKTIRKMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L + + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLSYTEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKHDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + + EFYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDSYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + ++L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ DE E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDALM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|67459101|ref|YP_246725.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia felis URRWXCal2] gi|67004634|gb|AAY61560.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia felis URRWXCal2] Length = 607 Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 199/680 (29%), Positives = 298/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + G IL DRY + E Q F RV+ A ++ A + Y Sbjct: 13 INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 63 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L I EN LA GG+G+ W Sbjct: 64 YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 123 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR + I G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D Sbjct: 124 GNVRSINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 183 IRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLISPAT----------------- 225 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV K+ A LW K+LT ETG P++ F D N P+ H V Sbjct: 226 ----------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 275 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + ++ I + + LDNV++ Sbjct: 276 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFI 335 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + S R++GLG+MGF S L + +P S A + E+IS A Sbjct: 336 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADK 395 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+E+ +E+GA D++ + R Sbjct: 396 ASIEIGKEKGACP--------------DALDAGSNER----------------------- 418 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L L+++ Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 475 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN+ Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 535 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L S K L+ I+ +AW G+K+ YY RS S +K + + + + + Sbjct: 536 FLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKADFKDLEKQNDKLA 595 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + EC CQ Sbjct: 596 EAG--------NYEECLACQ 607 >gi|237743585|ref|ZP_04574066.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 7_1] gi|229432616|gb|EEO42828.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 7_1] Length = 755 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 233/843 (27%), Positives = 383/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + ++ +E +++ V R L+ + REV + F + I + Sbjct: 66 AVSMTTFEESDWSYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMT 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L + + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLSYTEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKYDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + + EFYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITEMDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGVELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + ++L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ DE E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSIYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|239947954|ref|ZP_04699707.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922230|gb|EER22254.1| ribonucleoside-diphosphate reductase, alpha subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 616 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 199/680 (29%), Positives = 295/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + G IL DRY + E Q F RV+ A ++ A + Y Sbjct: 22 INNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 72 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L I EN LA GG+G+ W Sbjct: 73 YMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYW 132 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR + I G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+ Sbjct: 133 GNVRSINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIG 191 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 192 IRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLISPAT----------------- 234 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV K+ A LW K+LT ETG P++ F D N P+ H V Sbjct: 235 ----------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 284 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + ++ I + + LDNV++ Sbjct: 285 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFI 344 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + S R++GLG+MGF S L + +P S + E+IS A Sbjct: 345 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADK 404 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+E+ +E+G D++ + R Sbjct: 405 ASIEIGKEKGVCP--------------DALDAGSNER----------------------- 427 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L L+++ Sbjct: 428 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 484 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN+ Sbjct: 485 NNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 544 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L S K L+ I+ +AW G+K+ YY RS S +K + VP D Sbjct: 545 FLPGNISKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHD--------VPKADFKDL 596 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + + EC CQ Sbjct: 597 EKQNDKLAEAGNYEECLACQ 616 >gi|330004286|ref|ZP_08304844.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] gi|328536658|gb|EGF62980.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] Length = 775 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 195/826 (23%), Positives = 315/826 (38%), Gaps = 74/826 (8%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++I+ +G+ + + ++ +V A G+ VS+ V ++ DG++ S + ALI Sbjct: 1 MIRIIKRNGSAEALSEEKYNRVVMWATDGVDGVSASAVAMGAAASIVDGMTTSQVHDALI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI + PNY++V AR + K+R++ +E Y E+ + + Sbjct: 61 KAAADLISADSPNYSQVAARLSIFKIRKDAHG----------QYEYPDFY-EHILKNVTR 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV + ++ L +K ERD F Y L +Y +NG E PQ Sbjct: 110 GVYDSEIMHKYSCEEIDELGAYMKPERDDNFGYAATTQLRGKYLVQHRVNGEIYESPQHI 169 Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 +M V M L + + FY++ S+F TP + T Q SSC L Sbjct: 170 YMLVGMCLYQDWNNGDMGKTRLEMVKGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I G+G ++ +R LG+ I GVIPFLK+ Sbjct: 230 ESGDSLKSINATTSAIVEYISQRAGIGVNFGSIRALGSPIRNGEATHTGVIPFLKLFQAA 289 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA AY WH++ L L+ N G D R M+ + L +R+ Sbjct: 290 VKSCSQGGVRGGAATAYYPLWHLEANSLLVLKNNRGVDSNRVRHMDYGVELNRLMYRRLI 349 Query: 495 QNAGWTLFSPDEVS---DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 + TLFSP +V + EFE Y YE + + AV L+ ++ Sbjct: 350 EGGAITLFSPHDVPGLLNAFYADQDEFERLYVQYENDPSIRK----ESVPAVDLFSSLMQ 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609 TG +I D N + SNLC EI L + G I L Sbjct: 406 ERASTGRIYIANIDHMNTHGAFDEAVAPIKQSNLCAEIALPTKPLAFTDDPNGEIALCTL 465 Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 L AV LD ++D + + A+ R++G+G+ F L Sbjct: 466 SAFNLGALESLADLEEVAFYAVSALDCLLDYQDYPMFAAETPAKARRSLGIGVTNFAYWL 525 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y+ + ++ E+ E + F+ + AS LA ++GA F + + +G+ PID Sbjct: 526 AKNGAKYSGVDGNKLVHETFEAVQFYLLKASNLLASDKGACEWFGQTKYAKGLLPIDHY- 584 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 EL N L WD L+K ++ G+RNS A P T + I + I+P Sbjct: 585 RKQLDASELNANHPLLLDWDGLRKDIERYGLRNSTLSAQMPCETSSQITNSTNGIEPPRG 644 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VKS+ G +V + D++ + G + + Sbjct: 645 PVSVKSSKDGVVKMVVPEFSRIGDAY-----EYLWDIEDNFGYLTKV------------- 686 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTT 900 + QK+IDQ+ S N D +K+ A+ MG+KT Sbjct: 687 -------------AIMQKFIDQSISANTNYDPARFASGRVPMQKMLTDLLDAYRMGVKTL 733 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 YY +R + + A + +C Sbjct: 734 YYHNTRDGAG----SREDDKITHQAHLPSSTEFIEEEDECGGACKI 775 >gi|66391515|ref|YP_239040.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43] gi|62288603|gb|AAX78586.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB43] Length = 751 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 194/788 (24%), Positives = 315/788 (39%), Gaps = 73/788 (9%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++ G F ++L ++ A G +++ L + DG++ ++ Sbjct: 3 EIKTVIKSSGVSQPFEKEKLFKVLNWASVG-KNIDVNAFLESVVDLLRDGMTTKQIQGVA 61 Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + I KEP++ V A + LR+ V P + E+ + ++ Sbjct: 62 IKYAADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVD 110 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + + D+ Y ++K+++DF F Y G+Q L +Y NG E PQ Sbjct: 111 AGKYDKEILTKWTKADIEYFEENIKHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQY 170 Query: 320 FFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 FM +AM L E V+FYN +S TP + T Q SSC + Sbjct: 171 AFMLIAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIES 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L + G+G + +R +G+ I G GVIPF K Sbjct: 231 GDSLGSLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++VE L L+ N G + R ++ + DL KR+ N Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEVENLLVLKNNKGVENNRIRHLDYGVQLNDLMYKRLINN 350 Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 TLFSPD +D + EFE Y + E+ + ++I A L++ ++ Sbjct: 351 DYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPTVRK----KRIKAADLFQLLVQ 406 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 +TG +I N + V SNLC EI + +S + G I L Sbjct: 407 ERAQTGRKYIFNSHHVNQQGSF--SVPVRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLM 464 Query: 612 AN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 A + D + + R AVR LDN++D + + A K R++G+G+ + S L Sbjct: 465 AIVLDNADVSEFPALTRIAVRALDNLLDYQNYPVAAALK-AKQRRSLGVGITNYASWLAS 523 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y S E ME ++ + AS+ELA+ERGA F + + QG+ PID Sbjct: 524 NYCDY-SEAYAGNVHELMEAFQYNLLVASMELAKERGACGLFHETKYAQGLLPIDWYCKT 582 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ +K G+RNS A+ P + + + + I+P + Sbjct: 583 VDELAL----PVYNCDWEWLRGEIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 638 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 VKS+ G F N + N+ Q D +D + + G + ++ Sbjct: 639 SVKSSKEGSF---NQVVPNQNDQIDFYDYLWTMAKRGNKGYLSHV--------------- 680 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY 902 + QK++DQA S N D + + A G+KT YY Sbjct: 681 -----------AVMQKFVDQAISANTNYDPANFPDGKVKSETIIDDLLYANYYGVKTLYY 729 Query: 903 LRSRSATS 910 +R Sbjct: 730 HNTRDGAG 737 >gi|157827264|ref|YP_001496328.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia bellii OSU 85-389] gi|157802568|gb|ABV79291.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia bellii OSU 85-389] Length = 607 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 199/686 (29%), Positives = 301/686 (43%), Gaps = 95/686 (13%) Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L ++ + G IL DRY + E Q F RV+ A + Sbjct: 7 NKLQININNNYNDLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAENKE----H 57 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A + Y +S FM +TP L N GT SCFL D L I EN LA G Sbjct: 58 AQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETGDSLDDIVNLWTENVWLASRGG 117 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+ W VR + IH G S G+IPF+KV + +A++QG R+G+ YL H + Sbjct: 118 GIGSYWGNVRSINEAIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPE 176 Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 +EEF+D+R+ TG D R++ +++ I D FM+ V N + L SP Sbjct: 177 IEEFIDIRRPTGGDVNRKSLNIHHGIAITDKFMQAVENNTDFELISPAT----------- 225 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 KV K+ A LW K+LT ETG P++ F D N P+ H Sbjct: 226 ----------------KKVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKK 269 Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 V SNLC+EITL + + L + ++ I T + LDN Sbjct: 270 LGLHVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIPTIMLFLDN 329 Query: 635 VIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V++ + S R++GLG+MGF S L + +P S A + E++ Sbjct: 330 VLEDFINKAPDTMARAKYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYV 389 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S ASV++ +E+GA D++ + R Sbjct: 390 SKEVEEASVKIGKEKGACP--------------DALDAGSNER----------------- 418 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L Sbjct: 419 ---------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERL 469 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+++ ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE A+ R +I Q Sbjct: 470 LEEKGFNNDQVWSSISTHEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQ 529 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 AQSLN++L S K L+ I+ +AW G+K+ YY RS S +K + + G + Sbjct: 530 AQSLNVFLPGNVSKKYLNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKGDFKDLEK 589 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + EC CQ Sbjct: 590 QNDKLAEANK--------YEECLACQ 607 >gi|294661478|ref|YP_003579931.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15] gi|292660639|gb|ADE34887.1| NrdA ribonucleotide reductase A subunit [Klebsiella phage KP15] Length = 750 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 189/794 (23%), Positives = 326/794 (41%), Gaps = 72/794 (9%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 ++ G F+ +++ +++ AC G ++ + L + + DG++ ++ I + Sbjct: 7 VVKSSGVRQPFDKEKIYKVLKWACDG-HNIDVRAFLENVLELIRDGMTTKQIQRIAIKYA 65 Query: 207 RTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 I KEP++ V + + LR++V P + ++ + +E G Sbjct: 66 ADHISVKEPDWQYVASNLEMFALRKDVYGQFDPIP-----------FYDHIVKMVEAGKY 114 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMR 323 + + E D+ + +++DF F Y G Q L +Y G E PQ FM Sbjct: 115 DKEILEKYSKQDIQVFERAIDHDKDFEFSYAGSQQLIGKYLVQDRDTGEIFETPQYAFML 174 Query: 324 VAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +AM L +ET + V+FYN +S TP + T Q SSC + D L Sbjct: 175 IAMCLHQEETGLAQVTHIVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIESGDSLG 234 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 + G+G + +R +G+ I G GVIPF K + +QG Sbjct: 235 SLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVKSCSQG 294 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R GA Y WH++VE L L+ N G + R ++ + L KR+ TL Sbjct: 295 GVRGGAATLYYPFWHLEVENLLVLKNNKGVEENRVRHLDYGVQLNQLMYKRLMNRDYITL 354 Query: 502 FSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 FSPD +D ++ FE YE+ E+ + ++I AV L++ + +T Sbjct: 355 FSPDVANDRLYDLFYEADQTAFEELYESLEKDPTVRK----KRIKAVDLFQLLAQERAQT 410 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN--N 614 G +I N + V SNLC EI + +S + G I L A + Sbjct: 411 GRKYIFNTHHVNQQGSF--TVPVRMSNLCCEIAIPTSPLDDDDKMAGEIGLCTLMAIVLD 468 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D + R AVR LDN++D + ++ A K R++G+G+ + S L + Y Sbjct: 469 NADISEFPKLTRIAVRALDNLLDYQNYPVKAALK-AKQRRSLGVGITNYASWLASNYCDY 527 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S + E ME F+ + AS+ELA+ERGA + + + +G+ PID + Sbjct: 528 -SEAYTDKVHELMEAFQFNLLVASMELAKERGACGLYNDTKYARGLLPIDWYCKTVDE-- 584 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + W+ L+ ++K G+RNS A+ P + + + + I+P + +KS+ Sbjct: 585 --LVAPVYNCDWEWLRSQIKKYGLRNSTLSALMPCESSSQVSNSTNGIEPPRGLVSIKSS 642 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G + N + N+ Q D +D + + G + ++ Sbjct: 643 KEGHY---NQVVPNQNNQIDFYDLLWDMAKRGNKGYLSHV-------------------- 679 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSG-------KKLDFIYRQAWLMGLKTTYYLRSRS 907 + QK++DQ+ S N D + + + A G+KT YY +R Sbjct: 680 ------AVMQKFVDQSISANTNYDPANYEDGKVKTEDIIDDLLYANYYGVKTLYYHNTRD 733 Query: 908 ATSVEKSTLKGVDG 921 E+ + G Sbjct: 734 GAGDEEEAAEDCAG 747 >gi|148264309|ref|YP_001231015.1| ribonucleotide-diphosphate reductase subunit alpha [Geobacter uraniireducens Rf4] gi|146397809|gb|ABQ26442.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter uraniireducens Rf4] Length = 742 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 179/662 (27%), Positives = 298/662 (45%), Gaps = 83/662 (12%) Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345 L +L RY G +E P F RVA +A+ +++A +FY + Sbjct: 12 LSKNALTVLEKRYLKRDKEGKVLETPVDMFRRVAESIAVANARFDQKADLAALADKFYAM 71 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +++F F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 72 MTAFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFEAVKYTALIHKSGGGTGFSFS 131 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G + F++V + + QGG R+GA L H D+ +F+ Sbjct: 132 RLRPANDVVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMC 191 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D+R+ ++ N + I + FMK V + + + +P L Sbjct: 192 KA----DQRQLNNFNISVGITEAFMKAVDADTDYNIVNPRSGEKAGIL------------ 235 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +A ++ +++ +E G P I F D N +P H+G + S+N C Sbjct: 236 ---------------NARKVFNRIVKQAWENGEPGIIFLDRLNKDNPTPHIGEIESTNPC 280 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL N + ++++L I+ AV LDNVI++N + +E+ Sbjct: 281 GEQPLLPY----ESCNLGSINLGKMVQNGEVNWERLKEVIQLAVNFLDNVIEVNNYPLEQ 336 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++R IGLG+MG+ L LL IPY S +A+E+ ++ M+FI+ +ASVELA+ R Sbjct: 337 IDTMTRSNRKIGLGVMGWADMLILLGIPYNSMKAIELGEKVMKFINDEGHAASVELAKTR 396 Query: 706 GAYSSFKGSLW-DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G + +FKGS++ G P +RN+ Sbjct: 397 GTFPNFKGSVFDAPGKGP-----------------------------------IRNATVT 421 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I S ++P + +V+ M + VN K + + E ++ Sbjct: 422 TIAPTGTISIIANASSGVEPLFAVSFVRQVMDKNILLEVNPIFEEIAKAQGFYSEELMKK 481 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + H G++ +I IP+ ++ I TA +I P I + QK+ D A S + + Sbjct: 482 IAEH-GTVHDIPEIPEAVRNIFVTAHDITPEVHIAMQAAFQKYTDNAVSKTVNFPNSATF 540 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + ++ +YR A+ K R S ST K + V T +H P Sbjct: 541 EDVEKVYRLAYESNCKGVTIYRDGSRDEQVLSTGKKEETP--QVHPTGEEKRSHKRERPK 598 Query: 943 SC 944 + Sbjct: 599 AL 600 >gi|257453170|ref|ZP_05618469.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp. 3_1_5R] gi|257467365|ref|ZP_05631676.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918495|ref|ZP_07914735.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium gonidiaformans ATCC 25563] gi|317059705|ref|ZP_07924190.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 3_1_5R] gi|313685381|gb|EFS22216.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 3_1_5R] gi|313692370|gb|EFS29205.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium gonidiaformans ATCC 25563] Length = 752 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 227/836 (27%), Positives = 377/836 (45%), Gaps = 120/836 (14%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ DG + N +++ + AC+GL +V+ + S+ + ++ ++ +LI S Sbjct: 7 KVINRDGIIEDLNIEKIREKLVRACAGL-EVNMVELESKIESIYEENITTKKIQESLINS 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + ++ +E ++A+V R L+ + REV + + + + G+ Sbjct: 66 AVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGELE---------KTISLMLSYGL 116 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 L ++ L + ERD ++Y G + RY L +G E+PQ FM + Sbjct: 117 YDARLS-KYTKEEIYELNQAIVPERDMVYDYAGASMFVHRYLLKYSGKIHELPQEVFMII 175 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AM L++ E +K K A E Y LS +TP L N + LSSCF+T + D++ IF Sbjct: 176 AMLLSIYEKDKVKVAKEIYEGLSLRKISLATPILANLRIPNGNLSSCFITAIDDNIESIF 235 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAVNQ G+R Sbjct: 236 YNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAVNQQGRR 295 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 GAV +++WH+D+E FL+L+ GD R + +D+ + +LFM+RV A WTL P Sbjct: 296 AGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGADWTLVDP 355 Query: 505 DEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 E+ ++ +LYG EFE YE ER+ +I++ + + A L+++++ ETG P Sbjct: 356 YEIRQIYGVELCELYGVEFEEVYERIERE---NKIQLKKIMKARDLFKEIMKSQLETGMP 412 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVC 600 +I FKD N R+ H+G++ + NLC E N S E C Sbjct: 413 YIFFKDRANERNHNSHLGMIGNGNLCMESFSNFSPSKNFQEKIVGNVAIHEKEMGEVHTC 472 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL S+NL ++L AVR LDN ID+ + ++ K N +R IG+G Sbjct: 473 NLLSLNLAEIME------EELEKYTSLAVRALDNTIDLTVTPLAESNKHNEKYRTIGVGA 526 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG L E+ E + E I+ +A+ AS LA++RG Y +F GS W QG+ Sbjct: 527 MGLADYLA--REYMIYEESEEEISQVFERIAAYALKASAFLARDRGQYPAFVGSKWSQGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 F + + + W E+ V G+RN AIAP + + + G + Sbjct: 585 FFGKTQDWYEKHSKYSDV-------WKEVFYLVDQYGLRNGELTAIAPNTSTSLLMGATA 637 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S+ P++ +++ N SG V + LK R + + Sbjct: 638 SVVPTFSRFFIEKNQSGATPRVVKY----LKDRAWFYPEFKN------------------ 675 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGL 897 +DP ++ S+ +W Q S+ L D K + AW G Sbjct: 676 ----------VDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLLTAWETGC 725 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K+ YY+R+ ++K+T + ECE C Sbjct: 726 KSVYYVRT-----IQKNT--------------------------NIMNEKEECESC 750 >gi|91205548|ref|YP_537903.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia bellii RML369-C] gi|91069092|gb|ABE04814.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia bellii RML369-C] Length = 607 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 199/686 (29%), Positives = 301/686 (43%), Gaps = 95/686 (13%) Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L ++ + G IL DRY + E Q F RV+ A + Sbjct: 7 NKLQININNNYNDLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAENKE----H 57 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 A + Y +S FM +TP L N GT SCFL D L I EN LA G Sbjct: 58 AQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLASRGG 117 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G+ W VR + IH G S G+IPF+KV + +A++QG R+G+ YL H + Sbjct: 118 GIGSYWGNVRSINEAIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPIDHPE 176 Query: 459 VEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 +EEF+D+R+ TG D R++ +++ I D FM+ V N + L SP Sbjct: 177 IEEFIDIRRPTGGDVNRKSLNIHHGIAITDKFMQAVENNTDFELISPAT----------- 225 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 KV K+ A LW K+LT ETG P++ F D N P+ H Sbjct: 226 ----------------KKVVTKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPKHHKK 269 Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 V SNLC+EITL + + L + ++ I T + LDN Sbjct: 270 LGLHVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIPTIMLFLDN 329 Query: 635 VIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 V++ + S R++GLG+MGF S L + +P S A + E++ Sbjct: 330 VLEDFINKAPDTMARAKYSAFRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYV 389 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 S ASV++ +E+GA D++ + R Sbjct: 390 SKEVEEASVKIGKEKGACP--------------DALDAGSNER----------------- 418 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L Sbjct: 419 ---------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLERL 469 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+++ ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE A+ R +I Q Sbjct: 470 LEEKGFNNDQVWSSISTHEGSVQHLTFLTEEEKQVFKTAYEIDQNWLIELAADRTSYITQ 529 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 AQSLN++L S K L+ I+ +AW G+K+ YY RS S +K + + G + Sbjct: 530 AQSLNVFLPGNVSKKYLNDIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKGDFKDLEK 589 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + EC CQ Sbjct: 590 QNDKLAEANK--------YEECLACQ 607 >gi|256027985|ref|ZP_05441819.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp. D11] gi|289765930|ref|ZP_06525308.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D11] gi|289717485|gb|EFD81497.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D11] Length = 755 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 233/843 (27%), Positives = 386/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + ++ +E +++ V R L+ + REV + + + F + I + V Sbjct: 66 AVSMTTFEESDWSYVAGRLLMMEAEREVYHS-------------RGFSYDNFPKTIRKMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L + + +L + + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDKRLLSYTEEELHQITQLIDINRDMVYDYAGAHMFVNRYLIKHDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + + EFYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVEIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIAKISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNET 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---PNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + ++L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLTELTS------EELEKYVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ DE E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEIDELFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKVMAKIGSWVTQGVSMEMVFDLN-KDIKAKNIYDALM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|238650261|ref|YP_002916113.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia peacockii str. Rustic] gi|238624359|gb|ACR47065.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia peacockii str. Rustic] Length = 607 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 200/692 (28%), Positives = 299/692 (43%), Gaps = 95/692 (13%) Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 M F + + G IL DRY + E Q F RV+ A Sbjct: 1 MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 ++ A + Y +S FM +TP L N GT SCFL D L I EN Sbjct: 55 ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 LA GG+G+ W VR + I G S G+IPF+KV + +A++QG R+G+ YL Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170 Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 H ++EEF+D+R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPAT----- 225 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 KV K+ A LW K+LT ETG P++ F D N Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263 Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 P+ H V SNLC+EITL + + L + ++ I + Sbjct: 264 PEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323 Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + LDNV++ + S R++GLG+MGF S L + +P S A Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E+IS AS+E+ +E+GA D++ + R Sbjct: 384 KIFEYISAETDKASIEIGKEKGACP--------------DALDAGSNER----------- 418 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L L+++ ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R Sbjct: 464 KHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +I QAQSLN++L S K L+ I+ +AW G+K+ YY RS S +K + + Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVLKAD 583 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + + EC CQ Sbjct: 584 FKDLEEQNDKLAEAG--------NYEECLACQ 607 >gi|31322340|gb|AAP15463.1| ribonucleotide reductase large subunit [Rickettsia rickettsii str. 'Sheila Smith'] Length = 607 Score = 403 bits (1034), Expect = e-109, Method: Composition-based stats. Identities = 203/692 (29%), Positives = 301/692 (43%), Gaps = 95/692 (13%) Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 M F + + G IL DRY + E Q F RV+ A Sbjct: 1 MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 ++ A + Y +S FM +TP L N GT SCFL D L I EN Sbjct: 55 ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 LA GG+G+ W VR + I G S G+IPF+KV + +A++QG R+G+ YL Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170 Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 H ++EEF+D+R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVKNNTDFDLVSPAT----- 225 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 KV K+ A LW K+LT ETG P++ F D N Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263 Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 P+ H V SNLC+EITL + + L + ++ I + Sbjct: 264 PKHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323 Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + LDNV++ + S R++GLG+MGF S L + +P S A Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E+IS AS+E+ +E+G D++ + R Sbjct: 384 KIFEYISAETDKASIEIGKEKGVCP--------------DALDAGSNER----------- 418 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGPFNVRN 463 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L L+++ ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R Sbjct: 464 KHLERLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +I QAQSLN++L S K L+ I+ +AW G+K+ YY RS S +K + + K Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVL--K 581 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 N + + N G + EC CQ Sbjct: 582 ANFKDLGEQNDKLAEAG------NYEECLACQ 607 >gi|27375118|ref|NP_766647.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27348254|dbj|BAC45272.1| bll0007 [Bradyrhizobium japonicum USDA 110] Length = 723 Score = 403 bits (1034), Expect = e-109, Method: Composition-based stats. Identities = 197/679 (29%), Positives = 289/679 (42%), Gaps = 100/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L RD G L DRY L G Q F RV+ A + A Y+ Sbjct: 136 LDRSRDDLLTSFGRLTLTDRYLLAGEGL-----QDMFARVSCAFA----DNVAHAQRLYD 186 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL +V D L GI G EN LA GG+G W Sbjct: 187 AMSRLWFMPATPVLSNGGTTRGLPISCFLNSVSDSLEGIVGTWNENVWLASNGGGIGTYW 246 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G G + G+IPF+ V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 247 GNVRSIGEKAR--GGVTSGIIPFIHVTDGLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 304 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ + D FM V + L SP Sbjct: 305 IRKASGDFNRKSLNLHHGINVTDEFMCAVGAGTAFALRSPKTNE---------------- 348 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V R+I A LW+++L +TG P++ F D N P+ V + Sbjct: 349 -----------VVREIDARQLWQRILENRLQTGEPYLLFIDTVNRALPKHQRELGLEVST 397 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EITL++ + L + +++ I +R LDNV I Sbjct: 398 SNLCSEITLSTGIDHRGEERTAVCCLSSLNLETWDQWNEEPGFIEDVMRFLDNVLTHFIT 457 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +++A+ + R++GLG+MGF S L IP A + A +A Sbjct: 458 VAPDGMKRARYAALRERSVGLGVMGFHSFLQAKGIPMEGTLAKSFNLNMFRKLRREADAA 517 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SV LA+ERG D L++ V Sbjct: 518 SVALARERGPCP-------------------------------------DALERGVMA-- 538 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S +P N+Y +SG +V N L L + Sbjct: 539 -RFSHKIAIAPTASISIICGGTSACTEPIPANIYTHKTLSGAISVRNPHLAKVLAAKGAD 597 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 A + HDGS+ +++ + + K I TAFEID W++E A+ R I Q+QS+NLY Sbjct: 598 TSATWESIIAHDGSVAHLDVLSEHEKAIFRTAFEIDQRWIVELAADRAALICQSQSINLY 657 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW G+K+ YY RS+S + A +T Sbjct: 658 LPADVDKWDLHMLHWTAWKRGVKSLYYCRSKSISRA-------------AFAGKIAGDAT 704 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + T EC CQ Sbjct: 705 PTQQPARQRTDYEECLACQ 723 >gi|157828521|ref|YP_001494763.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933239|ref|YP_001650028.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia rickettsii str. Iowa] gi|157801002|gb|ABV76255.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908326|gb|ABY72622.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia rickettsii str. Iowa] Length = 607 Score = 403 bits (1034), Expect = e-109, Method: Composition-based stats. Identities = 203/692 (29%), Positives = 301/692 (43%), Gaps = 95/692 (13%) Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 M F + + G IL DRY + E Q F RV+ A Sbjct: 1 MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 ++ A + Y +S FM +TP L N GT SCFL D L I EN Sbjct: 55 ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 LA GG+G+ W VR + I G S G+IPF+KV + +A++QG R+G+ YL Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170 Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 H ++EEF+D+R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVKNNTDFDLVSPAT----- 225 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 KV K+ A LW K+LT ETG P++ F D N Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263 Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 P+ H V SNLC+EITL + + L + ++ I + Sbjct: 264 PKHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323 Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + LDNV++ + S R++GLG+MGF S L + +P S A Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E+IS AS+E+ +E+G D++ + R Sbjct: 384 KIFEYISAETDKASIEIGKEKGVCP--------------DALDAGSNER----------- 418 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L L+++ ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R Sbjct: 464 KHLERLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +I QAQSLN++L S K L+ I+ +AW G+K+ YY RS S +K + + K Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVL--K 581 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 N + + N G + EC CQ Sbjct: 582 ANFKDLEEQNDKLAEAG------NYEECLACQ 607 >gi|262067227|ref|ZP_06026839.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium periodonticum ATCC 33693] gi|291379060|gb|EFE86578.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium periodonticum ATCC 33693] Length = 755 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 235/843 (27%), Positives = 389/843 (46%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + T+ +E +++ V R L+ + REV +H + Y + F + I+ V Sbjct: 66 AVTMTSFEESDWSYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L ++ + RD ++Y G +L +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLTYTEEELNQISQLIDLNRDMVYDYAGANMLVNRYLIKHDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + EFYN LS +TP L N + LSSCF+T + D Sbjct: 173 MTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTLF P E+ + +LYG EFE YE E+ +IK+ R +SA L++ ++ Sbjct: 353 WTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL S+NL + D+L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISLNLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLMYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +G+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TVGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQ +F + R+ N + W+E V+ G+RN AIAP + + Sbjct: 582 KWDQAIFFG-------KKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWTTQGVSMEMVFDLN-KDIKAKDIYDTLI 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNN--------------------------ISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|304373618|ref|YP_003858363.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16] gi|299829574|gb|ADJ55367.1| NrdA ribonucleotide reductase A subunit [Enterobacteria phage RB16] Length = 750 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 197/790 (24%), Positives = 318/790 (40%), Gaps = 73/790 (9%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 ++ G +F ++L ++ A +G +++ L + DG++ ++ Sbjct: 3 DIKTVVKSSGVSQTFEKEKLFKVLNWASAG-KNIDVNAFLENVVDLLRDGMTTKQIQAVA 61 Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + I KEP++ V A + LR+ V P + E+ + +E Sbjct: 62 IKYAADRISVKEPDWQYVAANLEMFALRKTVYGQFDPIP-----------FYEHITKLVE 110 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQA 319 G + + D+ Y ++ +++DF F Y G+Q L +Y NG E PQ Sbjct: 111 AGKYDKEILTKWTKSDIEYFEENINHDKDFEFSYAGVQQLIGKYLLQDRTNGDIYETPQY 170 Query: 320 FFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 FM +AM L E V+FYN +S TP + T Q SSC + Sbjct: 171 AFMLIAMCLHQDEPRTLSAFNHVVDFYNAISDRKLSLPTPIMAGVRTPTRQFSSCVVIES 230 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L + G+G + +R +G+ I G GVIPF K Sbjct: 231 GDSLGSLNAVTSAIVKYISQRAGIGVNAGHIRAMGSKIRGGEAVHTGVIPFWKHIQTAVK 290 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R GA Y WH++VE L L+ N G + R ++ + DL KR+ N Sbjct: 291 SCSQGGVRGGAATLYYPIWHLEVENLLVLKNNRGVEENRIRHLDYGVQLNDLMYKRLINN 350 Query: 497 AGWTLFSPDEVSD-----LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 TLFSPD +D + EFE Y + E+ + ++I AV L++ ++ Sbjct: 351 DYITLFSPDVANDRLYDAFYQADQTEFEELYTSLEKDPAVRK----KRIKAVDLFQLLVQ 406 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 +TG +I N + + SNLC EI + +S + G I L Sbjct: 407 ERAQTGRKYIFNSHHVNQQGSF--SVPIRMSNLCCEIAIPTSPLDDDDKLAGEIGLCTLM 464 Query: 612 AN--NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 A + D + + R AVR LDN++D + + A K R++G+G+ + S L Sbjct: 465 AIVLDNADISEFPALTRIAVRALDNLLDYQNYPVAAALK-AKQRRSLGVGITNYASWLAS 523 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y S E ME F+ + AS+ELAQERGA F + + QG+ PID Sbjct: 524 NYCDY-SEAYAGNVHELMEAFQFNLLVASMELAQERGACGLFHETKYAQGLLPIDWYCKN 582 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + W+ L+ +K G+RNS A+ P + + + + I+P + Sbjct: 583 VDELAS----PVYNCDWEWLRGEIKKHGLRNSTLSALMPCESSSQVSNSTNGIEPPRGPV 638 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 VKS+ G F N + N+ Q D +D + + G + ++ Sbjct: 639 SVKSSKEGSF---NQVVPNQNNQIDFYDYLWTMAKRGNKGYLAHV--------------- 680 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY 902 + QK++DQA S N D + + A G+KT YY Sbjct: 681 -----------AVMQKFVDQAISANTNYDPANFPDGKVKSEIILEDLLYANYFGIKTLYY 729 Query: 903 LRSRSATSVE 912 +R E Sbjct: 730 HNTRDGAGEE 739 >gi|288931372|ref|YP_003435432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ferroglobus placidus DSM 10642] gi|288893620|gb|ADC65157.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ferroglobus placidus DSM 10642] Length = 756 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 169/628 (26%), Positives = 280/628 (44%), Gaps = 81/628 (12%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNL 345 +L RY L + G+ IE P+ RVA +A E + + A +F+ + Sbjct: 1 MELSKTAEVVLKKRYLLKDDKGNVIETPEQMLWRVANAIAEAEEKYGNDPDYWAKKFFEI 60 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + FM ++PTL N+GT QLS+CF+ V D + GIF AL + A + K GG G ++ Sbjct: 61 MDRQEFMPNSPTLMNAGTELNQLSACFVIPVEDSIDGIFKALWDMAKVQKSGGGTGFSFS 120 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + T G + G + F+K+ + + QGG+R+GA L H D+EEF+ Sbjct: 121 RIRPKGDIVKSTKGVASGPVSFMKIFDAATEQIKQGGRRRGANMGVLSVHHPDIEEFITA 180 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + + + N + + D FM+ + + + L +P Sbjct: 181 KW----EEGVLRNFNISVAVTDKFMEALKNDEDYELINPRT------------------- 217 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V +K+SA ++ ++ + G P + F D N +P HVG++ ++N C Sbjct: 218 --------GEVVKKVSARKIFNLIVEGAWRNGEPGLIFIDEINRHNPTPHVGMIEATNPC 269 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTI 643 E L CNLGSINL + D +++L + A R LDNVID+N + I Sbjct: 270 GEQPLLPY----ESCNLGSINLSKFVNEKEGDFEWERLREVVHIATRFLDNVIDVNSYPI 325 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + +K +R IGLG+MG+ AL L IPY S EAV +A++ M+FI + AS LA+ Sbjct: 326 PEIEKMTKGNRKIGLGVMGWADALFKLKIPYDSEEAVALAEKVMKFIQEESHKASQMLAE 385 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 ERG + ++KGS+W + + M + Sbjct: 386 ERGVFPNWKGSVW---------------EKRGIKMRNATTTTIAPTGTI----------- 419 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAMI 821 + I G S I+P + Y ++N+ +F +N LK+ L+ E +I Sbjct: 420 ---------SIIAGCSSGIEPVFALAYKRTNILDGEEFFEINPIFERTLKEIGLYREDII 470 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 + +GSI I IP+ ++++ A +I W + + QK+ D A S + L Sbjct: 471 ERVAE-EGSIQRIGEIPEAVRRVFKCALDIPAEWHVRMQAAFQKYTDNAVSKTINLPNHA 529 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + ++ + A+ + K R S Sbjct: 530 TKADVEKAFLLAYELKCKGITVYRDGSR 557 >gi|237738721|ref|ZP_04569202.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 2_1_31] gi|229423824|gb|EEO38871.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. 2_1_31] Length = 755 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 237/843 (28%), Positives = 389/843 (46%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + T+ +E ++A V R L+ + REV +H + Y + F + I+ V Sbjct: 66 AVTMTSFEESDWAYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L ++ + RD ++Y G +L +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLTYTEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + EFYN LS +TP L N + LSSCF+T + D Sbjct: 173 MAISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTLF P E+ + +LYG EFE YE E+ +IK+ R +SA L++ ++ Sbjct: 353 WTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL S+NL + D+L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISLNLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLMYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQ +F + R+ N + W+E V+ G+RN AIAP + + Sbjct: 582 KWDQAIFFG-------KKREWYEANSKFKDEWNEAFYLVEANGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGSTASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWTTQGVSMEMVFDLN-KDIKAKDIYDTLM 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW G K+ YY+R+ ++K+T + EC Sbjct: 722 TAWEEGCKSVYYIRT-----IQKNTNNISEK--------------------------EEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|289805311|ref|ZP_06535940.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 664 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 173/676 (25%), Positives = 281/676 (41%), Gaps = 31/676 (4%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DG N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 4 SLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI ++ P+Y + AR + LR++ + + +E Sbjct: 64 KAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL-----------YHHVVKMVEL 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 G L E + + + + + ++RD F Y ++ L +Y + G E Q Sbjct: 113 GKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRV--AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V + + FY+ +S+F TP + T Q SSC L D Sbjct: 173 YILVVACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 293 SQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGIQINKLMYTRLLKGGD 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 353 ITLFSPSDVPGLYDAFFADQDEFERLYVKYE----NDDSIRKQRVKAVELFSLMMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 469 LGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNG 528 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 529 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 +N W++L++ +KT G+RNS A+ P+ T + I + I+P + + Sbjct: 589 AI----VNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSI 644 Query: 792 KSNMSGDFTVVNSFLV 807 K++ G V Sbjct: 645 KASKDGILRQVVPDYE 660 >gi|52788093|ref|YP_093921.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis] gi|145597235|ref|YP_001154699.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Pestoides F] gi|229896975|ref|ZP_04512134.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit [Yersinia pestis Pestoides A] gi|52538022|emb|CAG27447.1| putative ribonucleoside-diphosphate reductase alpha subunit [Yersinia pestis] gi|145213003|gb|ABP42408.1| ribonucleoside-diphosphate reductase class Ia alpha subunit [Yersinia pestis Pestoides F] gi|229700011|gb|EEO88051.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit [Yersinia pestis Pestoides A] Length = 771 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 203/835 (24%), Positives = 326/835 (39%), Gaps = 91/835 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G+ + ++ +V +++VS+ V +++DG++ L AL+ Sbjct: 1 MISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALV 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY +V AR L K+R++ + + + Sbjct: 61 KSAADLISPETPNYLQVAARLNLFKIRKDAFGQYDYPN-----------FYNHIVSNVSR 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV L + ++ L +K +RD F Y L +Y + G+ E PQ Sbjct: 110 GVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQL 169 Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 +M V M L + + FY++ S+F TP + T Q SSC L Sbjct: 170 YMLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 230 EAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTA 289 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA A+ WH++VE L L+ N G + R ++ I L +R+ Sbjct: 290 VKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLV 349 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N TLFSP +V L+D + +FE Y YE E + I AV L+ ++ Sbjct: 350 HNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIRKKSIPAVDLFSTLMQ 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609 TG +I D N VH SNLC EITL + G I L Sbjct: 406 ERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNGEIALCTL 465 Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D L AV LD+++D + + A+ R++G+G+ F L Sbjct: 466 SAFNLGAIRTLDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNFAYYL 525 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y+ ++ E+ E I ++ + AS LA+ +GA F + + QG P+D Sbjct: 526 AKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLPVDHYR 585 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + ++PW+EL+ R++ G+RNS A P T + I + I+P Sbjct: 586 KTLDT--NPETSFELKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VKS+ G +V LK + Sbjct: 644 PVSVKSSKDGIVKMVVPDFAQ--------------------------------LKDQYEY 671 Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLKT 899 +++ D + + QK+ DQA S N D+ KL A+ G+KT Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPTRFPGDKVPMMKLLEDLLFAYQQGVKT 731 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953 YY +T G + + V++P+++ + EC+ C Sbjct: 732 LYY----------HNTRDGAGKRDDDDQVSEPSAAEVVEP-------EDECDGAC 769 >gi|15892570|ref|NP_360284.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia conorii str. Malish 7] gi|15619734|gb|AAL03185.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia conorii str. Malish 7] Length = 607 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 200/692 (28%), Positives = 299/692 (43%), Gaps = 95/692 (13%) Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 M F + + G IL DRY + E Q F RV+ A Sbjct: 1 MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN- 54 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 ++ A + Y +S FM +TP L N GT SCFL D L I EN Sbjct: 55 ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 LA GG+G+ W VR + I G S G+IPF+KV + +A++QG R+G+ YL Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170 Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 H ++EEF+D+R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPAT----- 225 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 KV K+ A LW K+LT ETG P++ F D N Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263 Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 P+ H V SNLC+EITL + + L + ++ I + Sbjct: 264 PEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323 Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + LDNV++ + S R++GLG+MGF S L + +P S A Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E+IS AS+E+ +E+GA D++ + R Sbjct: 384 KIFEYISAETDKASIEIGKEKGACP--------------DALDAGSNER----------- 418 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L L+++ ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R Sbjct: 464 KHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +I QAQSLN++L S K L+ I+ +AW G+K+ YY RS S +K + + Sbjct: 524 TPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKISHDVLKAD 583 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + + EC CQ Sbjct: 584 FKDLEEQNDKLAE--------TGNYEECLACQ 607 >gi|289523461|ref|ZP_06440315.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503153|gb|EFD24317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 740 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 185/650 (28%), Positives = 292/650 (44%), Gaps = 85/650 (13%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFYNL 345 F ++L RY L G+ IE P+ RVA + E +E+ A +FY + Sbjct: 11 FSENATKVLERRYLLKDEKGNLIETPEDMLWRVASAIAKAEKAFGDEESEEEWANKFYEM 70 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++S F+ ++PTL N+GT QLS+CF+ V D + IF AL+ A++ K GG G +++ Sbjct: 71 MASLDFLPNSPTLMNAGTPTAQLSACFVLPVGDSMDEIFDALKYTALVHKSGGGTGFNFS 130 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + T G + G + F+++ + T V QGG R+GA L H DV +F+ Sbjct: 131 SLRPYGDIVKSTKGVASGPVSFMELFDHTTDVVKQGGMRRGANMGILNADHPDVIKFVKA 190 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + + + + N + FMK V + W L +P Sbjct: 191 KI----EEGKLKNFNISVGTTQKFMKAVLNDEEWELVNPRT------------------- 227 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V K+ A L+ + M ++TG P I F D + ++G + ++N C Sbjct: 228 --------GEVVDKVGARNLFDLLCEMAWKTGDPGIIFLDKIEASNLTPNLGSITATNPC 279 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 E L CNLGSINL + D+ KL T+R AVR LD+VI++N I+ Sbjct: 280 GEQPLLPF----ESCNLGSINLSNMVLPKGEIDWSKLERTVRIAVRFLDDVIEVNQFPIK 335 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + + R IGLG+MG+ L L IPY S EA+ +A + M FI+ S LA+ Sbjct: 336 EIADMTMSTRKIGLGVMGWADVLLKLRIPYDSDEALNLARKVMSFIAKIGHEESARLAET 395 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RG + ++KGS W E + L MRN+ Sbjct: 396 RGPFPAWKGSRW--------------EEKGML---------------------MRNATVT 420 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD--FTVVNSFLVNELKQRDLWDEAMIS 822 IAPT TI+ + VS ++P + Y + G+ T VN L++ L++ L+ EA+I Sbjct: 421 TIAPTGTISLVAEVSSGVEPVFALAYRRKAFEGEANLTYVNEILLDALREERLYSEALIE 480 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + GS+ ++ +PD LKK+ TA +I P W + + Q++ D A S + + E S Sbjct: 481 LILER-GSLKELD-LPDSLKKVFVTAHDISPEWHVRMQAAFQEYTDNAVSKTINMPHEAS 538 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDGKLNAVPVT 929 + Y A+ +G K R R T + ++ P Sbjct: 539 VDDVKKAYLLAYELGCKGITIFRDRCKEDQVLYIGTGEVPSSEVKEEPKG 588 >gi|302381297|ref|YP_003817120.1| ribonucleoside-diphosphate reductase, subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302191925|gb|ADK99496.1| ribonucleoside-diphosphate reductase, alpha subunit [Brevundimonas subvibrioides ATCC 15264] Length = 631 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 194/679 (28%), Positives = 298/679 (43%), Gaps = 94/679 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L RD G + L DRY L E Q F RV+ A + A Y+ Sbjct: 38 LDRTRDDLLTDFGKKTLEDRYLL-----AGESYQDMFARVSTAYA----DDADHAQRVYD 88 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM STP L N G SCFL +V D L GI EN LA GG+G W Sbjct: 89 YMSKLWFMPSTPVLSNGGANRGLPISCFLNSVQDSLDGIQRVWNENVSLASNGGGIGTYW 148 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 149 GGVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDVHHPEIEEFLE 207 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM+ V + + L SP + + Sbjct: 208 IRKPSGDFNRKSLNLHHGINITDEFMEAVKAGSDFALLSPKDQA---------------- 251 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V R++ A +LW+K+L + +TG P++ F D N + P+ V Sbjct: 252 -----------VIRRVDARSLWQKILEIRLQTGEPYLIFSDTVNRQMPRHQRELGLKVKQ 300 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLC+EI L++ + + L + A ++ + + +R LDNV++ Sbjct: 301 SNLCSEIMLHTGPDHLGIDRTAVCCLSSVNAEMFLEWREEPRFVEDVMRFLDNVLEDFIT 360 Query: 642 TIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 S R++GLGLMGF S L + + S A + + A A Sbjct: 361 RAPPEMAAAVYSAKRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADKA 420 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SV+LA+E+G D ++ V Sbjct: 421 SVKLAEEKGPCE-------------------------------------DAAERGVME-- 441 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L L Sbjct: 442 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLDGYGAN 500 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +A+ S + H+GS+ ++ + DD K I TAFE+D W++E ++ R I QAQS+NL+ Sbjct: 501 TDAVWSSILEHEGSVQHLTMLNDDEKGIFKTAFELDQRWVVELSADRSPEICQAQSINLF 560 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + + L ++ AW G+K+ YYLRS+S Sbjct: 561 IPGDVNKWDLHMLHWSAWERGVKSLYYLRSKSVQRA--------AFAGAEDKAEVEPDPN 612 Query: 936 HSLGIPSSCTSDTECEVCQ 954 ++ T EC CQ Sbjct: 613 QPDLFSAAPTDYDECLACQ 631 >gi|148284014|ref|YP_001248104.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia tsutsugamushi str. Boryong] gi|146739453|emb|CAM79092.1| ribonucleoside-diphosphate reductase alpha chain [Orientia tsutsugamushi str. Boryong] Length = 605 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 201/685 (29%), Positives = 302/685 (44%), Gaps = 95/685 (13%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 + ER+ L DRY L E Q +R+A A + + A Sbjct: 6 KFNIKINNERNKLLSTSSQATLADRYLLKG-----ETFQDLCVRIASYYA----DNKSHA 56 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 Y+ +S F+ +TP L N GT SCF+ V D L+GI EN LA GG Sbjct: 57 QRLYDYMSQHWFLPATPILSNGGTNRGLAISCFVNEVEDSLHGIVNTWIENVWLASRGGG 116 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G+ W VR + I NG S G+IPF+KV + +A++QG R+G+ YL H ++ Sbjct: 117 IGSYWGNVRSINEKIGE-NGYSSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPVSHPEI 175 Query: 460 EEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 EEF+D+R++TG D R++ +++ I D FM V +N W L SP + Sbjct: 176 EEFIDIRRHTGGDSNRKSLNIHHGIVISDQFMHAVEKNESWNLISPYDN----------- 224 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577 ++ + A LW K+LT ETG P+I F D N P+ H Sbjct: 225 ----------------RIINTVKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKL 268 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 V +SNLC+EITL + + T L + + I ++ LDNV Sbjct: 269 GLKVKTSNLCSEITLPTGRDYTNNIRTAVCCLSSLNLEYFELWQSNEHFIPDIIKFLDNV 328 Query: 636 IDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ++ + S R+IGLG+MGF S L +IP AS A + E I Sbjct: 329 LEDFINKAPNTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIK 388 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + SV LA+ERGA ID+ + R Sbjct: 389 LQTDNMSVVLAKERGAC--------------IDAQKCNIQER------------------ 416 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 S AIAPTA+I+ I S I+P N + + ++G F++ N L L Sbjct: 417 --------FSYKTAIAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLL 468 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + L ++ + S + H+GS+ ++ + D K+++ TA+EID WLIE A+ R ++I Q+ Sbjct: 469 ESKGLNNDQVWSSIATHEGSVQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQS 528 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QSLN++L S + L I+ AW +K+ YY RS S EK + + V Sbjct: 529 QSLNIFLPGNCSKQLLHDIHFDAWKKNIKSLYYCRSTSIQRAEKVS--------HVVTTI 580 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 D + ++ +D EC CQ Sbjct: 581 DELAKLTDKEQLATSNNDDECLACQ 605 >gi|157803770|ref|YP_001492319.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia canadensis str. McKiel] gi|157785033|gb|ABV73534.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia canadensis str. McKiel] Length = 607 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 198/680 (29%), Positives = 298/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + G IL DRY + E Q F RV+ A ++ A + Y Sbjct: 13 INNSHNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 63 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L I EN LA GG+G+ W Sbjct: 64 YMSKMWFMPATPILSNGGTDRGLPISCFLNETNDSLDDIVNLWTENVWLASRGGGIGSYW 123 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR + IH G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D Sbjct: 124 GNVRSINEEIHN-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ G D R++ +++ I D FM V N + L SP Sbjct: 183 IRRPIGGDVNRKSLNIHHGIAITDEFMNAVENNTDFNLVSPAT----------------- 225 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV K+ A LW K+LT ETG P++ F D N P+ H V Sbjct: 226 ----------KKVTNKVRARDLWIKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVK 275 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + ++ + I + + LDNV++ Sbjct: 276 MSNLCSEITLPTGIDHLGNSRTAVCCLSSLNLEYFEEWKDDKAFIHSIMLFLDNVLEDFI 335 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + S R++GLG+MGF S L + +P S A + E+IS A Sbjct: 336 NKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNKKIFEYISAEADK 395 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+E+ +E+GA D++ + R Sbjct: 396 ASIEIGKEKGACP--------------DALDAGSNER----------------------- 418 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L L+++ Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGF 475 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + H+GS+ ++ + + K++ TA+EID WLIE AS R +I QAQSLN+ Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSAEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNI 535 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L S K L+ I+ +AW G+K+ YY RS S +K + + + + + Sbjct: 536 FLPGNVSKKYLNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDVLKADFKDLEKQNNKIA 595 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + EC CQ Sbjct: 596 EAG--------NYEECLACQ 607 >gi|315497332|ref|YP_004086136.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis excentricus CB 48] gi|315415344|gb|ADU11985.1| ribonucleoside-diphosphate reductase, alpha subunit [Asticcacaulis excentricus CB 48] Length = 625 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 201/678 (29%), Positives = 293/678 (43%), Gaps = 100/678 (14%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 +D G + L DRY L E Q F RVA A + + A YN Sbjct: 39 DPSKDDKLTEFGKKTLDDRYLL-----AGETYQDMFARVATAYA----DDSEHAQRIYNY 89 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S+ FM +TP L N G + SCFL VPD L GI EN LA GG+G W Sbjct: 90 ISNLWFMPATPVLSNGGAKRGLPISCFLNAVPDSLEGIVSVWNENVALASNGGGIGTYWG 149 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 VR +G + G G++ G+IPF++V + +A++QG R+G+ Y++ +H ++EEFL++ Sbjct: 150 GVRSIGEKVKG-AGQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYIDIFHPEIEEFLEI 208 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 RK +GD R+ +++ I D FM+ V A + L SP Sbjct: 209 RKPSGDFNRKALNLHHGISITDEFMEAVRDGAQFGLRSPKNNE----------------- 251 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 + R + A ALW+K+L + +TG P++ F D N V S Sbjct: 252 ----------IIRYVDARALWQKILEIRMQTGEPYLIFADTVNRSMAPHQRELGLKVKQS 301 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 NLC EI L++ + L + A ++ I +R LDNV++ + Sbjct: 302 NLCAEIMLHTGKDHLGHERTAVCCLSSVNAETFLEWRDEPRFIEDIMRFLDNVLEDFIQS 361 Query: 643 IEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 A S R++GLGLMGF S L + + S A + + A AS Sbjct: 362 APDAMSAAIYSAQRERSVGLGLMGFHSFLQSQGVAFESAMAKSWNMRLFKHLRREADKAS 421 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 V+LAQERG L AE R + Sbjct: 422 VKLAQERGPC-------------------LDAEERGVME--------------------- 441 Query: 759 RNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N FL L ++ + Sbjct: 442 RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPFLRALLAEKGIDT 501 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + H+GS+ +I+ + +D K I TAFEID W++E A+ R I Q+QSLN++L Sbjct: 502 PETWDSIVEHEGSVQHIDALSEDEKAIFKTAFEIDQRWVVELAADRAPEICQSQSLNIFL 561 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + L ++ AW G+K+ YYLRS+S + Sbjct: 562 PGDVDKWDLHMLHWTAWEQGVKSLYYLRSKSVQRA--------------AFAGSEGKAAA 607 Query: 937 SLGIPSSCTSDTECEVCQ 954 S T EC CQ Sbjct: 608 VSMAASGKTDYEECLACQ 625 >gi|312262464|gb|ADQ52759.1| NrdA ribonucleotide reductase A subunit [Aeromonas phage PX29] Length = 744 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 193/798 (24%), Positives = 321/798 (40%), Gaps = 84/798 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G SF+ ++L I+ A +G + ++S ++ +G+S D++ I Sbjct: 1 MLVRKSSGITESFDKQKLYRIITFATTG-TRIDPIEIMSGIMSSITNGMSTKDIQKLAIK 59 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I E P+Y V AR + LR++ K E+ +++G Sbjct: 60 FAADRISIEQPDYQYVAARLQMYALRKQAYNQFDPPHLKRHTLEL-----------VQDG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321 + L D + L N + +ERDF Y G+ ++Y G E PQ + Sbjct: 109 IYDPDLATKWTDEEFSELNNYIIHERDFNLAYAGVMQFKEKYLAKDRSTGELYETPQMLY 168 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M VAM L E ++ + FY++ S TP L T Q SSC D+L Sbjct: 169 MLVAMCLHQDEKTDRLAKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIESGDEL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R G+ I + G+IPF K + +Q Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA Y WH++VE+ L L+ N G + R ++ I +F +R+ + T Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKMFWERLKNDDYIT 348 Query: 501 LFSPD----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSPD E+ DL +F+ YE E + + ++I A ++ T Sbjct: 349 LFSPDVQNGELYDLFYKDPVKFKELYEMLEEEPFVRK----KRIKASEIFNLFAQERTGT 404 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------ETAVCNLGSINLLAH 610 G + F D N +P + + SNLC EI L + E A+C L + NL A Sbjct: 405 GRIYPMFIDNVNSATP--YKEPIRQSNLCIEIALPTYPVKRDGSGEIALCTLAAYNLGAI 462 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + Y+ + R AVR LDN++D + + +A + RA+G+G+ F L Sbjct: 463 ES-----YEDFLNVARAAVRALDNLLDYQDYPVVQAL-AAKKRRALGIGVTNFAYFLAKN 516 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+S A ++ +ME + F + AS+ELA+ERGA + W G+ PID Sbjct: 517 FVDYSSGNANKLVHRTMEMMQFANLVASMELAKERGANEWHHKTKWADGLLPIDWYNKNV 576 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + ++ W+ L+ +K G+RN A P + + I + I+P + Sbjct: 577 DNI----VPNDLKMDWEWLRAEIKKYGLRNDTLSAFMPCESSSQITNSTNGIEPPRALMS 632 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K + G F + + D L + TA++ Sbjct: 633 TKQSKDGVFNQLVPEV--------------------------------DMLGSEYETAWK 660 Query: 851 ID---PMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKTT 900 + ++ + QK++DQ S N Y D K + +A G+K+ Sbjct: 661 MTKRGMKGYLDIVAIMQKFVDQMISANTYYDPAVYPGEKIPMKIVLKDMSRAQKHGVKSM 720 Query: 901 YYLRSRSATSVEKSTLKG 918 YY +R + T Sbjct: 721 YYSNTRDGADGTEDTSSE 738 >gi|222056106|ref|YP_002538468.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. FRC-32] gi|221565395|gb|ACM21367.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. FRC-32] Length = 742 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 173/659 (26%), Positives = 295/659 (44%), Gaps = 81/659 (12%) Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345 + +L RY +G +E P F RVA +A + +K+A +F+ + Sbjct: 12 LSKNAVTVLEKRYLKRDKDGKVLESPVDMFRRVAESIAAADARFDKKADIAALADKFFAM 71 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++SF F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 72 MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKHTALIHKSGGGTGFSFS 131 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G + F++V + + QGG R+GA L H D+ +F+ Sbjct: 132 RLRPANDMVMSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMDFIMC 191 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D+R+ ++ N + + + FMK V + + L +P Sbjct: 192 KA----DQRQLNNFNISVGLTEEFMKAVDADREYNLINPRS------------------- 228 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + ++A ++ +++ +E G P I F D N +P H+G + S+N C Sbjct: 229 --------GEKAGSLNARKVFNRIVKQAWENGEPGIIFIDRLNKDNPTPHIGQIESTNPC 280 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL + + ++ +L I AV LDNVI++N + +E+ Sbjct: 281 GEQPLLPY----ESCNLGSINLGKMVEHGEINWQRLKEVILLAVNFLDNVIEVNNYPLEQ 336 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 +R IGLG+MG+ L LL IPY S EA+E+ ++ M+FI+ +ASV+LA+ R Sbjct: 337 IDAMTRANRKIGLGVMGWADLLILLGIPYNSKEAIELGEKIMKFINDEGHAASVQLAKVR 396 Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G + +FKGS++D G+ P +RN+ Sbjct: 397 GPFPNFKGSIFDKPGMEP-----------------------------------IRNATVT 421 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I S ++P + +++ M + VN K+ + E ++ Sbjct: 422 TIAPTGTISIIANASSGVEPLFAVSFIRQVMDKNILLEVNPIFEETAKKEGFYSEELMQK 481 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + H G++ +I IP+ ++ + TA +I P I + QK D A S + + Sbjct: 482 IAEH-GTVHDIPEIPEQIRNVFVTAHDITPEVHISMQAAFQKHTDNAVSKTVNFPNSATI 540 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 ++++ +YR A+ K R S ST K + + S Sbjct: 541 EEVEKVYRLAYETNCKGVTIYRDGSRDEQVLSTGKKDEAPKTLPVADEKRSHKRERPKA 599 >gi|45478634|ref|NP_995490.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|45357287|gb|AAS58681.1| putative ribonucleoside-diphosphate reductase alpha subunit [Yersinia pestis biovar Microtus str. 91001] Length = 771 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 203/835 (24%), Positives = 325/835 (38%), Gaps = 91/835 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ +G+ + ++ +V +++VS+ V +++DG++ L AL+ Sbjct: 1 MISIVKRNGSTEPLSEEKYNRVVMWGVENIRNVSASAVAMGAAASIFDGMTTCQLHEALV 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 S+ LI E PNY +V AR L K+R++ + + + Sbjct: 61 KSAADLISPETPNYLQVAARLNLFKIRKDAFGQYDYPN-----------FYNHIVSNVSR 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 GV L + ++ L +K +RD F Y L +Y + G+ E PQ Sbjct: 110 GVYDEDLLKYYSLEEIAELGAYIKPKRDEYFGYAATVQLASKYLVQNRVTGAIYEGPQQL 169 Query: 321 FMRVAMGLALKE------TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 +M V M L + + FY++ S+F TP + T Q SSC L Sbjct: 170 YMLVGMCLFQNWEDGCAGKTRLEMVRGFYDVTSTFKLSLPTPIMAGVRTPTRQFSSCVLI 229 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L GI A G+G + +R LG+ I GVIPFLK Sbjct: 230 EAADSLKGISAASSAIIDYVSRRAGIGIGFGRLRALGSEIRNGEATHTGVIPFLKHFQTA 289 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 + +QGG R GA A+ WH++VE L L+ N G + R ++ I L +R+ Sbjct: 290 VKSCSQGGVRSGAATAFYPIWHLEVESLLVLKNNRGIEENRVRHLDYGVMINRLMYRRLV 349 Query: 495 QNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N TLFSP +V L+D + +FE Y YE E + I AV L+ ++ Sbjct: 350 HNENITLFSPHDVPGLYDAFFVDQDKFEELYLEYEAD----ESIRKKSIPAVDLFSTLMQ 405 Query: 552 MLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA- 609 TG +I D N VH SNLC EITL + G I L Sbjct: 406 ERASTGRVYIANVDHMNDHGAFVPEIAPVHQSNLCMEITLPTKPLAFTDDPNGEIALCTL 465 Query: 610 --HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D L AV LD+++D + + A+ R++G+G+ F L Sbjct: 466 SAFNLGAIRTLDSLKDVAFYAVAALDSLLDYQDYPMAAAEIPAKARRSLGIGVTNFAYYL 525 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 Y+ ++ E+ E I ++ + AS LA+ +GA F + + QG P+D Sbjct: 526 AKNGFNYSDAAGNQLVHETFEAIQYYLLDASCRLAEAKGACDWFSHTKYAQGQLPVDHYR 585 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + ++PW+EL+ R++ G+RNS A P T + I + I+P Sbjct: 586 KTLDT--NPETSFELKMPWEELRGRIREHGLRNSTLTAQMPCETSSQITNSTNGIEPPRG 643 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + VKS+ G +V LK + Sbjct: 644 PVSVKSSKDGIVKMVVPDFAQ--------------------------------LKDQYEY 671 Query: 848 AFEI-DPMWLIESASRRQKWIDQAQSLNLYLDEP-------SGKKLDFIYRQAWLMGLKT 899 +++ D + + QK+ DQA S N D KL A+ G+KT Sbjct: 672 LWDMPDNRGYLTKVAIIQKFFDQAISANTNYDPTRFLAIRFPMMKLLEDLLFAYQQGVKT 731 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE-VC 953 YY +T G + + V++P+++ + EC+ C Sbjct: 732 LYY----------HNTRDGAGKRDDDDQVSEPSAAEVVEP-------EDECDGAC 769 >gi|256846216|ref|ZP_05551674.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_36A2] gi|256719775|gb|EEU33330.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 3_1_36A2] Length = 755 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 235/843 (27%), Positives = 384/843 (45%), Gaps = 131/843 (15%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + ++ +E ++A V R L+ + REV + F + I + V Sbjct: 66 AVSMTTFEESDWAYVAGRLLMMEAEREVYHSRGFSYGD-------------FSKTIRKMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L + + RD ++Y G + +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLSYTEEELNQITQLIDINRDMVYDYAGANMFVNRYLIKHDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M L L E E + K EFYN LS +TP L N H LSSCF+T + D Sbjct: 173 MAISMMLVLNEKEGETRVKIVKEFYNALSLRKLSLATPILANLRIPHGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIVNDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNEA 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTL P E+ + +LYG EFE YE E IK+ + +SA L++ ++ Sbjct: 353 WTLLDPYEIRKKYGIELCELYGYEFENLYEKIEND---SNIKLKKVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFIEKEDGNTSIRKSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL SINL + D+L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISINLAELTS------DELEKHVALAVRALDNTIDLTVTPLKESNKHNLLYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINEIFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 WDQG+F + R+ N + W+E V+T G+RN AIAP + + Sbjct: 582 KWDQGIF-------YGKKREWYDTNSKFKDEWNEAFYLVETNGLRNGELTAIAPNTSTSL 634 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + G + S+ P++ +++ N G LK R + + Sbjct: 635 LMGATASVTPTFSRFFIEKNQRGAIPRTVKH----LKDRAWFYPEFKN------------ 678 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL----NLYLDEPSGKKLDFIYR 890 ++P+ ++ ++ W+ Q S+ +L + K + Sbjct: 679 ----------------VNPISYVKIMAKIGSWVTQGVSMEMVFDLN-KDIKAKDIYDTLI 721 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 AW K+ YY+R+ ++K+T +S + EC Sbjct: 722 TAWEESCKSVYYIRT-----IQKNT--------------------------NSISDKEEC 750 Query: 951 EVC 953 E C Sbjct: 751 ESC 753 >gi|295691247|ref|YP_003594940.1| ribonucleoside-diphosphate reductase subunit alpha [Caulobacter segnis ATCC 21756] gi|295433150|gb|ADG12322.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter segnis ATCC 21756] Length = 625 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 199/679 (29%), Positives = 296/679 (43%), Gaps = 98/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY L E Q F RVA A + A Y+ Sbjct: 36 VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVATAFA----DDADHAQRVYD 86 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL V D L GI G EN LA GG+G W Sbjct: 87 YMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYW 146 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 147 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 205 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM V + L SP Sbjct: 206 IRKPSGDFNRKSLNLHHGINITDEFMHAVRDGHKFGLRSPKTNE---------------- 249 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V R++ A ALW+K+L + +TG P++ F D N P V Sbjct: 250 -----------VLREVDARALWQKVLELRLQTGEPYLIFSDSVNNAMPSFQRELGLKVRQ 298 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EI L++ ++ L + A ++ + I +R LDNV ID Sbjct: 299 SNLCSEIMLHTGTDHLGNERTAVCCLSSVNAETFLEWRDHPTFIEDVMRFLDNVLQDFID 358 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 A + R++GLGLMGF S L ++P+ S A + + A A Sbjct: 359 RAPDAAASAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 418 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S++L +E+G A R + Sbjct: 419 SIKLGEEKGPCP-------------------DAADRGSVE-------------------- 439 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L N L ++ Sbjct: 440 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLENLLAEKGQN 498 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +A+ + H+GS+ +++ + D K ++ TAFE+D W+IE A+ R I Q+QS+N++ Sbjct: 499 TDAVWGSILEHEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNVF 558 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW G+K+ YYLRS+S G + V T Sbjct: 559 LPGDVDKWDLHMLHWTAWERGVKSLYYLRSKSVQRA------AYAGAEDKVAATTSGFDV 612 Query: 936 HSLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 613 PEK------TDYDECLACQ 625 >gi|221236543|ref|YP_002518980.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter crescentus NA1000] gi|220965716|gb|ACL97072.1| ribonucleoside-diphosphate reductase alpha chain [Caulobacter crescentus NA1000] Length = 627 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 196/679 (28%), Positives = 296/679 (43%), Gaps = 98/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY L E Q F RV+ A + A Y+ Sbjct: 38 VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVSTAFA----DDADHAQRVYD 88 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL V D L GI G EN LA GG+G W Sbjct: 89 YMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYW 148 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 149 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 207 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM V + L SP Sbjct: 208 IRKPSGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTNE---------------- 251 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V R++ A ALW+K+L + +TG P++ F D N P V Sbjct: 252 -----------VLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQ 300 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EI L++ ++ L + A ++ + I +R LDNV ID Sbjct: 301 SNLCSEIMLHTGTDHLGQERTAVCCLSSVNAETYLEWRDHPTFIEDVMRFLDNVLQDFID 360 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 A + R++GLGLMGF S L ++P+ S A + + A A Sbjct: 361 RAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 420 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S++L +E+G A R + Sbjct: 421 SIKLGEEKGPCP-------------------DAADRGSME-------------------- 441 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L L+++ Sbjct: 442 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQN 500 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +A+ + ++GS+ +++ + D K ++ TAFE+D W+IE A+ R I Q+QS+N++ Sbjct: 501 TDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNVF 560 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW G+K+ YYLRS+S G + K A Sbjct: 561 LPGDVDKWDLHMLHWMAWERGVKSLYYLRSKSVQRAA---YAGAEDKAEAAAGGFDVPEK 617 Query: 936 HSLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 618 ---------TDYDECLACQ 627 >gi|16127722|ref|NP_422286.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter crescentus CB15] gi|13425218|gb|AAK25454.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter crescentus CB15] Length = 619 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 196/679 (28%), Positives = 296/679 (43%), Gaps = 98/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY L E Q F RV+ A + A Y+ Sbjct: 30 VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVSTAFA----DDADHAQRVYD 80 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N G SCFL V D L GI G EN LA GG+G W Sbjct: 81 YMSRLWFMPATPVLSNGGADRGLPISCFLNAVNDSLDGILGVWNENVWLAANGGGIGTYW 140 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 141 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 199 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM V + L SP Sbjct: 200 IRKPSGDFNRKSLNLHHGLSITDEFMHAVRDGTKFGLRSPKTNE---------------- 243 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 V R++ A ALW+K+L + +TG P++ F D N P V Sbjct: 244 -----------VLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPSFQRELGLKVRQ 292 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EI L++ ++ L + A ++ + I +R LDNV ID Sbjct: 293 SNLCSEIMLHTGTDHLGQERTAVCCLSSVNAETYLEWRDHPTFIEDVMRFLDNVLQDFID 352 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 A + R++GLGLMGF S L ++P+ S A + + A A Sbjct: 353 RAPDAASAAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 412 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S++L +E+G A R + Sbjct: 413 SIKLGEEKGPCP-------------------DAADRGSME-------------------- 433 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L L+++ Sbjct: 434 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKLLEEKGQN 492 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +A+ + ++GS+ +++ + D K ++ TAFE+D W+IE A+ R I Q+QS+N++ Sbjct: 493 TDAVWGSILENEGSVQHLDFLSQDEKDVYKTAFELDQRWVIELAADRTPEICQSQSVNVF 552 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW G+K+ YYLRS+S G + K A Sbjct: 553 LPGDVDKWDLHMLHWMAWERGVKSLYYLRSKSVQRAA---YAGAEDKAEAAAGGFDVPEK 609 Query: 936 HSLGIPSSCTSDTECEVCQ 954 T EC CQ Sbjct: 610 ---------TDYDECLACQ 619 >gi|88606797|ref|YP_504939.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma phagocytophilum HZ] gi|88597860|gb|ABD43330.1| ribonucleoside-diphosphate reductase, alpha subunit [Anaplasma phagocytophilum HZ] Length = 603 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 196/680 (28%), Positives = 297/680 (43%), Gaps = 99/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y RD G +L DRY L E Q F+RVA + + + A Y+ Sbjct: 13 IDYTRDDNLTNFGKAVLSDRYLLEK-----EDYQQLFVRVAQYYS----DDSQHAQRLYD 63 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 64 YMSKLWFMPATPILSNGGTSRGLPISCFLNETEDSLAGILNLWNENVWLASRGGGIGSYW 123 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 124 GNLRSIGERVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 182 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R+ +++ + D FM+ V + W L SP + Sbjct: 183 IRRPTGGDPNRKALNIHHGVLLSDEFMEAVEHDKTWDLLSPKD----------------- 225 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A LW K+LT ETG P+I F D N P+ + V Sbjct: 226 ----------KCVISTVKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVK 275 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID--- 637 SNLCTEITL + + L + + I +R LDNV+ Sbjct: 276 MSNLCTEITLTTGEDHLKKSRTAVCCLSSLNLEYYDMWCGNPQFIEDVMRFLDNVLTDFV 335 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 +E+A+ S R+IG+G+MGF S L +P+ S A + ++ A + Sbjct: 336 QKAPTELERARYSAMRERSIGIGVMGFHSFLQSKMVPFESFAATMWNKKIFSYLKSQADA 395 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA E+GA D+ R Sbjct: 396 VSRKLALEKGACP--------------DAQDANEMER----------------------- 418 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 + +++APTA+I+ I G S I+P N++ ++G F V N FL LK + Sbjct: 419 ---FVHKLSVAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQELLKSKGK 475 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 D+ + S + ++GS+ +++ + D K + TA+E+D W+IE + R +I QAQS+N+ Sbjct: 476 DDDQVWSSISTNEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYICQAQSVNI 535 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L ++ AW GLK+ YY+RS+S V ++N P Sbjct: 536 FLPAGVHKRYLHKVHFLAWKKGLKSLYYMRSKSVQRA-----DKVSHEVNGAAAVVPRKQ 590 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + S EC CQ Sbjct: 591 LTN-------FSYDECLSCQ 603 >gi|257462864|ref|ZP_05627270.1| ribonucleoside-diphosphate reductase alpha chain [Fusobacterium sp. D12] gi|317060490|ref|ZP_07924975.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D12] gi|313686166|gb|EFS23001.1| ribonucleoside-diphosphate reductase subunit alpha [Fusobacterium sp. D12] Length = 752 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 225/836 (26%), Positives = 371/836 (44%), Gaps = 114/836 (13%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 K K++ DG + + +++ + AC+GL +V+ + S+ + ++ ++ +L Sbjct: 4 EKRKVINRDGIVEELDIEKIREKLLRACAGL-EVNMVELESKIESIYEENITTKKIQESL 62 Query: 203 IFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S+ ++ +E ++A+V R L+ + REV + + + Sbjct: 63 INSAVSMTSFEESDWAEVAGRLLMMEAEREVYHSRGFSYGNLE---------KTISLMLS 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 G+ L + ++ L + ERD ++Y G + RY L NG E+PQ F Sbjct: 114 YGLYDTRLSI-YTEQEIYELNQAIVPERDMVYDYAGASMFVHRYLLKYNGKTHELPQEVF 172 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 M +AM L++ E ++ K A E Y LS +TP L N LSSCF+T + D++ Sbjct: 173 MIIAMLLSIHEQDRVKVAKEIYEGLSLQKISLATPILANLRIPKGNLSSCFITAIDDNIE 232 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAVNQ Sbjct: 233 SIFYNVDSIAKISKNGGGVGVNISRIRAKGSMVNGYYNASGGVVPWIRILNDTAVAVNQQ 292 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R GAV +++WH+D+E FL+L+ GD R + +D+ + +LFM+RV WTL Sbjct: 293 GRRAGAVTVAIDSWHLDMESFLELQTENGDQRGKAYDIYPQVVVSNLFMERVKSGEDWTL 352 Query: 502 FSPDEVSDLHDLYGKEF--EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 P E+ L+ + E E YER +I++ +K+ A L++ M+ ETG P Sbjct: 353 VDPYEIRKLYGVELCELYGAKFEEVYERVEREEKIQLKKKMKARDLFKAMMKSQLETGMP 412 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS-------------------SEETAVC 600 +I FKD N R+ H G++ + NLC E N S E C Sbjct: 413 YIFFKDRANERNHNSHEGMIGNGNLCMESFSNFSPSKNFQEEVLGNQAIRRKEMGEIHTC 472 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL S+NL ++L AVR LDN ID+ + ++ K N +R +G+G Sbjct: 473 NLLSLNLAEITE------EELEKYTGLAVRALDNTIDLTVTPLAESNKHNEKYRTVGVGA 526 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG L ++ Y E E + E I+ +A+ AS LA++RG Y +F GS W QG+ Sbjct: 527 MGLADYLAREYMIYEDSE--EEISQLFEKIAAYALKASAFLAKDRGQYPAFSGSKWSQGI 584 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 F + + + W E+ V G+RN AIAP + + + G + Sbjct: 585 FFGKTQEWYEKHSKYAEL-------WKEVFYLVDQYGLRNGELTAIAPNTSTSLLMGATA 637 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 SI P++ +++ N SG V + LK R + + Sbjct: 638 SIVPTFSRFFIEKNQSGATPRVVKY----LKDRAWFYPEFKN------------------ 675 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD---EPSGKKLDFIYRQAWLMGL 897 +DP ++ S+ +W Q S+ L D K + AW G Sbjct: 676 ----------VDPKTYVKITSKIGQWTTQGVSMELLFDLNKNVRAKDIYDTLVTAWETGC 725 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K+ YY+R+ ++K+T + ECE C Sbjct: 726 KSVYYVRT-----IQKNT--------------------------NIINEKEECESC 750 >gi|83592780|ref|YP_426532.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodospirillum rubrum ATCC 11170] gi|83575694|gb|ABC22245.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] Length = 629 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 207/679 (30%), Positives = 300/679 (44%), Gaps = 102/679 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 L+ RD G +L DRY L G Q F RV+ A + A Y+ Sbjct: 44 LERSRDDKLNAFGKAMLGDRYLLPGEG-----IQDMFARVSCAFA----DNAAHAQRLYD 94 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT+ SCFL TVPD L GI EN LA GG+G W Sbjct: 95 AMSKLWFMPATPILSNGGTQRGLPISCFLNTVPDSLEGIVAIWNENVDLASNGGGIGTYW 154 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G NG + G+IPF++V + +A++QG R+G+ YL+ H ++EEFL+ Sbjct: 155 GGVRSIGEAVKG-NGATSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLE 213 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ A I D FM+ V + + L SP Sbjct: 214 IRKASGDFNRKSLNLHHAINITDDFMEAVRDDRQFALKSPKS------------------ 255 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 +V R + A LW+K+L +TG P++ F D N P+ V S Sbjct: 256 ---------GEVLRSVGARQLWQKILETRLQTGEPYLLFTDTVNRALPKHQRDLGLRVSS 306 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC EITL + + L + +++ I +R LDNV I+ Sbjct: 307 SNLCAEITLPTGRDHRGQERTAVCCLSSLNIETWDEWENAPGFIEDVLRFLDNVLSHFIE 366 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +E+A + R++GLG+MGF S L IP+ S A I A +A Sbjct: 367 TAPDGMERAAYAAMRERSVGLGVMGFHSFLQARGIPFESALAKSWNLRLFRKIRRDADAA 426 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SV+LA ERGA D+ + R Sbjct: 427 SVDLADERGACP--------------DAAERGMKAR------------------------ 448 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 S +AIAPTA+I+ ICG S ++P N+Y +SG F+V N L L + L Sbjct: 449 --FSAKLAIAPTASISIICGGTSACVEPIPANVYTHKTLSGSFSVRNPHLARRLADKGLD 506 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + H+GS+ ++E + DD K + TAFEID W+I+ A+ R +I Q+QS+NLY Sbjct: 507 TAETWQSIIEHEGSVQHLEGLSDDEKLVFRTAFEIDQRWIIDLAADRAPFICQSQSINLY 566 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ AW GLK+ YY RS+S + G+ ++ P Sbjct: 567 LPADADKWDLHMLHWTAWRRGLKSLYYCRSKSVQRAAFVGREKPSGETSSAPRA------ 620 Query: 936 HSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 621 ----------DYDECLACQ 629 >gi|229586744|ref|YP_002845245.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia africae ESF-5] gi|228021794|gb|ACP53502.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia africae ESF-5] Length = 607 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 200/692 (28%), Positives = 299/692 (43%), Gaps = 95/692 (13%) Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 M F + + G IL DRY + E Q F RV+ A Sbjct: 1 MNTFKKNKFQITINNNHNNLLTPFGKAILRDRYLMQG-----EDFQDLFARVSSYYAEN- 54 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 ++ A + Y +S FM +TP L N GT SCFL D L I EN Sbjct: 55 ---KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVW 111 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 LA GG+G+ W VR + I G S G+IPF+KV + +A++QG R+G+ YL Sbjct: 112 LAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYL 170 Query: 453 ETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 H ++EEF+D+R+ TG D R+ +++ I D FMK V N + L SP Sbjct: 171 PINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAVENNTDFDLVSPAT----- 225 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 KV K+ A LW K+LT ETG P++ F D N Sbjct: 226 ----------------------KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSI 263 Query: 572 PQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 P+ H V SNLC+EITL + + L + ++ I + Sbjct: 264 PEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSI 323 Query: 629 VRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + LDNV++ + S R++GLG+MGF S L + +P S A Sbjct: 324 MLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSFLQMKKVPIESVMAKVWNK 383 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL 744 + E+IS AS+E+ +E+GA D++ + R Sbjct: 384 KIFEYISAETDKASIEIGKEKGACP--------------DALDAGSNER----------- 418 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVN 803 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N Sbjct: 419 ---------------FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRN 463 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L L+++ ++ + S + H+GS+ ++ + ++ K++ TA+EID WLIE AS R Sbjct: 464 KHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDR 523 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +I QAQSLN++L S K L+ I+ +AW G+K+ YY RS S +K + + Sbjct: 524 IPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCRSTSIQRADKVSHDVLKAD 583 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + + + EC CQ Sbjct: 584 FKDLEEQNDKLAEAG--------NYEECLACQ 607 >gi|77919448|ref|YP_357263.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter carbinolicus DSM 2380] gi|77545531|gb|ABA89093.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Pelobacter carbinolicus DSM 2380] Length = 744 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 182/665 (27%), Positives = 296/665 (44%), Gaps = 82/665 (12%) Query: 292 AFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKE------TEKEKRAVEFYN 344 L +L RY +G +E P F RVA +A E + A FY+ Sbjct: 10 LLSKNALTVLKRRYLKRDQDGRILEDPADMFRRVADAVADAETRLASGQDATSLADRFYD 69 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 ++ F+ ++PTL N+G QLS+CF+ V D + IF A+++ A++ K GG G + Sbjct: 70 AMTCLEFLPNSPTLMNAGRELGQLSACFVLPVDDSMESIFEAIKQTALIHKSGGGTGFSF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R + T G S G I F+KV + + QGG R+GA L H D+ +F+ Sbjct: 130 SRIRPANDVVLSTKGVSSGPISFMKVFDAATETIKQGGTRRGANMGILRVDHPDIMDFIM 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++K D + N + + + FMK V + + L +P Sbjct: 190 VKK----DLTVLTNFNLSVGLTEAFMKAVEEGQEYDLLNPRT------------------ 227 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + +K+ A ++ +++ M + +G P I F D N +P HVG + ++N Sbjct: 228 ---------GEPLKKLDARKVFDRIIDMAWTSGEPGIIFLDRLNRDNPTPHVGEIEATNP 278 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C E L CNLGSINL + + D++KL T++ VR LDNVI+IN + + Sbjct: 279 CGEQPLLPY----ESCNLGSINLSRMVTGDGEVDWEKLRDTVQLGVRFLDNVIEINRYPL 334 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + + ++R IGLG+MG+ L LL +PY S +A+ +AD+ M FI+ A + SV+LA+ Sbjct: 335 PQISEMTLSNRKIGLGIMGWADMLILLGLPYNSSQAIALADKLMNFITTEARATSVKLAE 394 Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +RGA+ +F GS +DQ G P +RN+ Sbjct: 395 QRGAFPNFPGSSYDQAGDGP-----------------------------------LRNAT 419 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMI 821 C IAPT TI+ I S ++P + Y++ M D V V+ + + ++ Sbjct: 420 CTTIAPTGTISIIANTSSGVEPIFAVSYIRQVMDNDVLVEVHPLFEAIAHKEGFYSPELM 479 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 + G+I + IP+ ++K+ TA +I P I + QK D A S + Sbjct: 480 KAIAE-KGTIQGFDEIPEKVRKLFVTAHDITPEDHIHMQAAFQKHTDNAVSKTVNFPHSA 538 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + +++ +YR A+ G K R S S K + + S H Sbjct: 539 TREEVAEVYRLAYKEGCKGVTIYRDGSRDMQVLSVAKAEEKPEEPAIPVESGKSGHKRER 598 Query: 941 PSSCT 945 P + T Sbjct: 599 PRALT 603 >gi|189184363|ref|YP_001938148.1| ribonucleotide-diphosphate reductase subunit alpha [Orientia tsutsugamushi str. Ikeda] gi|189181134|dbj|BAG40914.1| ribonucleoside-diphosphate reductase alpha chain [Orientia tsutsugamushi str. Ikeda] Length = 604 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 202/685 (29%), Positives = 302/685 (44%), Gaps = 96/685 (14%) Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 + ER+ L DRY L E Q +R+A A + + A Sbjct: 6 KFNIKINNERNKLLSTSSQATLADRYLLKG-----ETFQDLCVRIASYYA----DNKSHA 56 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 Y+ +S F+ +TP L N GT SCF+ V D LYGI EN LA GG Sbjct: 57 QRLYDYMSQHWFLPATPILSNGGTNRGLAISCFVNEVEDSLYGIVNTWIENVWLASRGGG 116 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G+ W VR + I NG S G+IPF+KV + +A++QG R+G+ YL H ++ Sbjct: 117 IGSYWGNVRSINEKIGE-NGYSSGIIPFIKVQDTMTLAISQGSLRRGSAAVYLPISHPEI 175 Query: 460 EEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 EEF+D+R++TG D R++ +++ I D FM V +N W L SP + Sbjct: 176 EEFIDIRRHTGGDSNRKSLNIHHGIVISDQFMHAVEKNESWNLISPYDD----------- 224 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG- 577 ++ + A LW K+LT ETG P+I F D N P+ H Sbjct: 225 ----------------RIINTVKARDLWVKLLTTRIETGEPYILFIDTVNKSLPEHHQKL 268 Query: 578 --VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 V +SNLC+EITL + + T L + + I +R LDNV Sbjct: 269 GLKVKTSNLCSEITLPTGRDYTNNIRTAVCCLSSLNLEYFGLWQSNEHFIPDIIRFLDNV 328 Query: 636 IDINCHTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 ++ + S R+IGLG+MGF S L +IP AS A + E I Sbjct: 329 LEDFINKAPDTMSNAKYSAMHERSIGLGVMGFHSLLQANNIPIASVMAKVWNKKIFEHIK 388 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + SV LA+ERGA ID+ + R Sbjct: 389 LQTDNMSVVLAKERGAC--------------IDAQKCNIQER------------------ 416 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 S A+APTA+I+ I S I+P N + + ++G F++ N L L Sbjct: 417 --------FSYKTAVAPTASISIIANNASPGIEPYAANSFTQKTLTGSFSIKNKNLEKLL 468 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + L ++ + S + H+GS+ ++ + D K+++ TA+EID WLIE A+ R ++I Q+ Sbjct: 469 ESKGLNNDQVWSSIATHEGSVQHLTFLSDHEKEVYKTAYEIDQRWLIELAADRTQYISQS 528 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QSLN++L S + L I+ AW +K+ YY RS S EK ++ V Sbjct: 529 QSLNIFLPGNCSKQLLHDIHFDAWKKNIKSLYYCRSTSIQRAEK---------VSHVVTI 579 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 D + ++ +D EC CQ Sbjct: 580 DELAKLTDKEQLATSNNDDECLACQ 604 >gi|310830453|ref|YP_003965554.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] gi|309249920|gb|ADO59486.1| ribonucleotide-diphosphate reductase subunit alpha [Paenibacillus polymyxa SC2] Length = 748 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 236/779 (30%), Positives = 369/779 (47%), Gaps = 104/779 (13%) Query: 191 DGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + ++ +D+ + ++ LI +EP++ + + + KL +E + K+ + Sbjct: 12 EEINAADITRTIYMTAVELISIEEPDWTYIASAAYVNKLYKEAA---LHRGYKSYPAKPY 68 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-LH 308 + + + +G+ R L E + +L+ L + Y++D F+Y+G+ L +RY Sbjct: 69 GSFSTLIKQLVCKGIYKRELIEEFTEQELLKLEETIDYKKDKLFDYIGIVTLQERYLASD 128 Query: 309 INGSRIEMPQAFFMRVAMGLALKE-------------------TEKEKRAVEFYNLLSSF 349 +G +E+PQ M +AM L + E+ E Y +S Sbjct: 129 YDGKTMELPQERLMLIAMDLMIDAGKMLDEKGKPTDDFLPGGRKERLSYIQEAYWAMSHL 188 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPTL N+G QLSSCF+ TV DDL IF + + A L+K GG+G VR Sbjct: 189 YMTTATPTLSNAGKAKGGQLSSCFIDTVDDDLRSIFDSNTDVARLSKVGGGIGVYVGKVR 248 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G KS G++P+++ N+TAV+V+Q G RKG++ YL+ WH D+ FLDL+ N Sbjct: 249 SRGAKIRGYEHKSSGLVPWIRQLNNTAVSVDQLGTRKGSIAVYLDVWHKDILAFLDLKLN 308 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY------ 522 GD+R R HD+ T IPDLFM+RV + + LF P EV G E Y Sbjct: 309 NGDERMRAHDIFTGVCIPDLFMERVERREEFYLFDPHEVRTFM---GWSLEDYYDEEPGD 365 Query: 523 ---ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 ++ + + A+ + ++M+ ETG P++ ++D N +P + G++ Sbjct: 366 GTFRRKYQECVDHPLLSRVALPAIDIMKRMMKAQLETGTPYMFYRDTVNRANPNKAHGII 425 Query: 580 HSSNLCTEITLNSS-----------------------SEETAVCNLGSINLLAHFANNQF 616 +SSNLC EI N S + VCNL SI+L Sbjct: 426 YSSNLCVEIMQNMSATTVAEEKLVEIDGEKMIMTLKRPGDFVVCNLASISLARAVKEGV- 484 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 L I +R+LDNVID+N + +A +N +RAIGLG G L LL I + S Sbjct: 485 ----LERLIPIMIRMLDNVIDLNQIDVLQATHTNQKYRAIGLGTSGLHHLLALLGIMWES 540 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA E D E+I++ AI AS++LA+E+G+Y FKGS W+ G + D + + Sbjct: 541 EEANEYNDHLYEWIAYLAIKASMQLAKEKGSYPLFKGSEWETGKYFSDRDYTSGKREGKF 600 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL-YVKSNM 795 + W EL +VK G+RN +AIAPT + + I G + SIDP Y+ L Y + Sbjct: 601 ----VTTEQWIELANQVKKHGIRNGYLLAIAPTGSTSIIAGTTASIDPIYKLLTYQEKT- 655 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPM 854 + + N + + + AF +D + Sbjct: 656 --TYKIANP-----------------------------APDLNVKTIQYYRKNAFLLDQL 684 Query: 855 WLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 I + RQ+ IDQ+QS NLY+ + K ++ QAW G+KTTYY+RS++ T E Sbjct: 685 ASIRMNATRQRHIDQSQSFNLYIRPDIKAKDFLVLHLQAWKSGVKTTYYVRSQALTVDE 743 >gi|206895118|ref|YP_002246867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Coprothermobacter proteolyticus DSM 5265] gi|206737735|gb|ACI16813.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Coprothermobacter proteolyticus DSM 5265] Length = 796 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 177/675 (26%), Positives = 299/675 (44%), Gaps = 87/675 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-------TEKEKRAVEF 342 + L++L RY L NG+ +E P+ RVA GLA E + +F Sbjct: 3 LEWSETALRVLEQRYLLRDENGNIVETPEQLMHRVAHGLAQIETVWGATSEQISSVEQDF 62 Query: 343 YNLLSSFHFMCSTPTLFNS-------GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 +++L F+ +TPTLF++ +S+C + + D + GIF L + A + + Sbjct: 63 FDILWKRDFLPNTPTLFHAGLPKDPKYRGRRFMSACIVLPIEDSIDGIFKTLWDAAKIMQ 122 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G ++ +R G+ + + GKS G + F+ + + V QGGKR+GA L Sbjct: 123 AGGGVGYAFSRLRPKGSLVKSSGGKSSGPVSFMHIYDVMVDVVAQGGKRRGAQMGVLNVH 182 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ EF+D +K + H+ N + + + F++ ++ + L +P Sbjct: 183 HPDILEFIDAKKENTSGQGPLHNFNISVAVTEEFVQAYKEDTTFKLVAPHT--------- 233 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +V +++A + K+ + TG P I F D N Sbjct: 234 ------------------GEVVGELNAREVMHKIAENAWRTGDPGIIFIDRINQLDYL-D 274 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRV 631 G + ++N C E L CNLGSINL Q+D++K TIR AVR Sbjct: 275 DGRIEATNPCGEQPLPPY----GSCNLGSINLKHMLKKTDSGYQWDWEKFQRTIRLAVRF 330 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVI+ N + I + + R IGLG+MG+ AL LL IPY S EA+E A + F+ Sbjct: 331 LDNVIEANDYPIPELEDYAKKARRIGLGVMGWADALSLLGIPYDSEEALEEARKVGAFLK 390 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + AS ELAQERG + + S W + P Sbjct: 391 EKSHLASQELAQERGVFEFYDQSKWKELGIP----------------------------- 421 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 MRN+ IAPT T++ + V+ I+P + + + +G F V L++ LK Sbjct: 422 ------MRNAAVTTIAPTGTLSILANVNSGIEPYFALAFERKITAGTFHEVQPTLLDVLK 475 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 +R+L+ E ++ + ++G + ++E +P+D++ TA E+ P W + + Q+ ID + Sbjct: 476 ERELYSEELVQRIIENEGKLRDLEDLPEDIRNAFPTAMEVAPEWHVRMQAAWQENIDSSI 535 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 S + L + + + ++ IY A+ +G K+ R +S + + ++ + Sbjct: 536 SKTVNLPYQSTVEDIENIYLLAYELGTKSITVYRDKSLELQVLNVPSTSPKERSSEETQE 595 Query: 931 PNSSTHSLGIPSSCT 945 P P T Sbjct: 596 PRPKRIFPKRPEVLT 610 >gi|255514004|gb|EET90268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 762 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 196/812 (24%), Positives = 337/812 (41%), Gaps = 132/812 (16%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYD-GLSESDLETALIFS 205 ++ D + + F+ ++E V + YK++YD + E++L S Sbjct: 5 VIKRDDSKVDFDRTKIENAV----------------FKAYKSVYDSNVKEAELRKRAENS 48 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + +E+ T K+ + ++ E ++ V Sbjct: 49 -------------------TTDIVKEIEATGKKEIRVEEIQDIV----EKVLMLKDQTVA 85 Query: 266 ARLLHESMMDFDLVYLANDLKYERD-FAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + ++ L D L +L RY L +G E P+ F R Sbjct: 86 KSYILYRHKKAEIRAFRASLGIPDDGLKLPINTLIVLASRYLLKGPDGKIAESPKQLFTR 145 Query: 324 VAMGLALKETEK-------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 V+ +A E + +EFY+ +++F FM ++PTL N+GT+ QLS+CF+ V Sbjct: 146 VSHYIAAAEKKFGKSDDETNALEMEFYDAITNFKFMPNSPTLMNAGTKLGQLSACFVLPV 205 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D + IF A++ A++ + GG G ++ +R + T G + G + F+KV + Sbjct: 206 GDSIVEIFDAVKYAAIIHQSGGGTGFSFSRLRPTNDMVKSTGGVASGPVSFMKVFDIATE 265 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V QGGKR+GA L H + +F+ ++ + N + I D FMK + N Sbjct: 266 QVKQGGKRRGANMGILRVDHPSILDFI----VAKENEGTLRNFNISVAITDEFMKALEAN 321 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 ++L +P KV K++A A+W ++TM ++T Sbjct: 322 RDYSLVNPR---------------------------NGKVVGKLNARAVWNLIITMAWKT 354 Query: 557 GHPWITFKDPCNIRSPQ--QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612 G P + F D N +G V S+N C E L CNLGSIN+ Sbjct: 355 GDPGLVFLDRINSSYSNPVPTLGPVESTNPCGEQPLYPY----DSCNLGSINMAKMLKKN 410 Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D+D+L R VR LDNVI+ N + +++ + R IGLG+MG+ L L Sbjct: 411 DGQYDIDWDELKRITRMGVRFLDNVIESNTYPLKEIEDVTKKIRRIGLGIMGWADMLIKL 470 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS-LWDQGVFPIDSIGLL 729 I Y S EA+ +A++ M FI+ +A S ELA+ERG + +FK S + G P Sbjct: 471 GIRYDSNEALMLAEKVMSFITENARKMSEELAEERGPFPAFKDSIWYKLGYKP------- 523 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQN 788 +RNS IAPT TI+ I G SQ I+P + Sbjct: 524 ----------------------------LRNSTVTTIAPTGTISIIAGGASQGIEPIFSV 555 Query: 789 LYVKSN---MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 +Y+++ + + VN+ + + + + ++ L SI ++E IP +++++ Sbjct: 556 VYMRNVHESLGSNLIEVNNEFEAMAIENNFYSDELMKKLAGRV-SIQDVEEIPQEIRRLF 614 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 TA++I P W + + QK++D A S + + + ++ Y A+ +G K R Sbjct: 615 VTAYDIAPEWHVRMQAAFQKYVDNAVSKTINFPSWATPQDIEKAYVLAYKLGCKGITVYR 674 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 S + +++ T + Sbjct: 675 DSSKSVQVLQSVEQQKTLTEPSSKTIKSIKEK 706 Score = 114 bits (285), Expect = 7e-23, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 21/165 (12%) Query: 31 VIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSA 90 VIKR+ FD +KI A+ KA+ +V + ++ +N T V + Sbjct: 5 VIKRDDSKVDFDRTKIENAVFKAYKSVY-DSNVKEAELRKRAENSTTDIVKEI--EATGK 61 Query: 91 LIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMMD 150 + +E+IQD VE LM + + Y+LYR +++++RA ++ D Sbjct: 62 KEIRVEEIQDIVEKVLMLKD-QTVAKSYILYRHKKAEIRAFRASLGIP-----------D 109 Query: 151 DGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 DG + N +IV + L+ K ++E+ K ++ +S Sbjct: 110 DGLKLPIN----TLIVLASRYLLKGPDGK--IAESPKQLFTRVSH 148 >gi|317131233|ref|YP_004090547.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ethanoligenens harbinense YUAN-3] gi|315469212|gb|ADU25816.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ethanoligenens harbinense YUAN-3] Length = 762 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 177/672 (26%), Positives = 291/672 (43%), Gaps = 91/672 (13%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343 +L RY + +G E + F RVA +A + A FY Sbjct: 1 MDITPNARTVLEKRYLIRDADGRPTETIEELFHRVADAIAAPDRTYNPDADIKALADRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 ++ F+ ++PTL N+G QL++CF+ V D + IF A+++ A++ K GG G Sbjct: 61 ARMTKLEFLPNSPTLMNAGRPLGQLAACFVLPVEDSMEAIFEAIKQAALIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R G+ ++ T G + G + F++V N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGSTVNTTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D +KN D + N + I + FM+ V + + L P+ Sbjct: 181 DCKKNNAD----ITNFNISVGITEAFMRAVEADEEYDLIDPNTKESTG------------ 224 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 ++SA ++ K++ + G P I F D N + VG + S+N Sbjct: 225 ---------------RLSAREVFEKIVDAAWRNGEPGIIFLDRLNRDNMVPSVGAIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDI 638 C E L CNLGS+NL + ++DKLA +R AV LDNVID Sbjct: 270 PCGEQPLLPY----EACNLGSVNLHRMLRRQEDGASVINWDKLADVVRDAVHFLDNVIDA 325 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + + R IGLG+MG+ L L IPY S EAV + ++ M FI+ A SAS Sbjct: 326 NRYPLAQIDHMTKQTRKIGLGVMGWADLLLELGIPYNSDEAVALGEKVMGFITDTARSAS 385 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 LAQ RGA+ F+ S G + Sbjct: 386 AGLAQVRGAFPLFEESTLKNGTP------------------------------------V 409 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWD 817 RN+ IAPT T++ I G S ++P + +++++ M G + N L L++R L+ Sbjct: 410 RNATMTTIAPTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTELVEANPVLRQLLEERGLYS 469 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E ++ + +GS+ +I+ +P+D++++ A +I P + I+ + Q+ D A S + Sbjct: 470 EDLMRQIA-QEGSLAHIDALPEDIRRVFVCAHDISPEYHIKMQAAFQRRTDNAVSKTVNF 528 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + + + +Y A+ +G K R S + GK+NA ++ Sbjct: 529 AHDATIADVRRVYMLAYELGCKGVTIYRDGSRDAQVL-----NIGKVNAEKPAATEAAPS 583 Query: 937 SLGIPSSCTSDT 948 G + Sbjct: 584 VSGTARAAGLQP 595 >gi|190571531|ref|YP_001975889.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018934|ref|ZP_03334742.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357803|emb|CAQ55259.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995885|gb|EEB56525.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 594 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 194/681 (28%), Positives = 301/681 (44%), Gaps = 101/681 (14%) Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + Y +D G +L DRY + E Q F+R+A + + A Y Sbjct: 5 AINYAKDSKLTDFGKAVLLDRYLIEN-----ESYQDLFIRIANYYSDNKE----HAQRLY 55 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + +S+ FM STP L N GT+ SCFL D L GI EN LA GG+G+ Sbjct: 56 DYMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSY 115 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 W +R +G + G +GK+ G++PF+ V N +A++QG R+G+ YL WH ++EEFL Sbjct: 116 WGNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFL 174 Query: 464 DLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 DLRK TG D R+ +++ A + D FM+ V + W L SP Sbjct: 175 DLRKPTGGDPNRKALNIHHAVIVTDKFMQAVEDDQEWDLISPHNN--------------- 219 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VV 579 KV + A +W K+LT ETG P+I F D N P+ + + Sbjct: 220 ------------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDI 267 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 SNLC+EITL + + L + ++ I +R LDNV++ Sbjct: 268 KMSNLCSEITLTTGYDHLKKSRTAVCCLSSVNLEYYEEWKDNELFIEDIMRFLDNVLEDF 327 Query: 640 CHTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + R+IGLG+MGF S L +P+ S A + + + + A Sbjct: 328 INQAPNEIQRAKYSAIRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKVFKHLREQAD 387 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 S +LA+E+G L A+ D + Sbjct: 388 VVSKKLAEEKGPC-------------------LDAKEIDLME------------------ 410 Query: 756 IGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 R ++ +AIAPTA+I+ I G S I+P N++++ ++G F V N FL L +++ Sbjct: 411 ---RFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKN 467 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 ++ + S + ++GS+ +++ + K TA+E+D W+IE AS R +I Q+QS+N Sbjct: 468 QDNDEIWSSISTNEGSVQHLDFLSKHEKLTFKTAYELDQQWIIEHASDRTPYICQSQSVN 527 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 L+L + L I+ AW GLK+ YY RS+S +K + TD Sbjct: 528 LFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD--- 584 Query: 934 STHSLGIPSSCTSDTECEVCQ 954 + EC CQ Sbjct: 585 -----------INYDECLSCQ 594 >gi|85723395|gb|ABC78338.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus aciditrophicus SB] Length = 771 Score = 398 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 170/677 (25%), Positives = 297/677 (43%), Gaps = 84/677 (12%) Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKET 333 D ++ + + + +++L RY +G+ +E P F RVA +A + Sbjct: 26 DSEMKKRTSSIDIS---SLTDNAIKVLGRRYLKRDRDGNALETPSQMFKRVADTIAAADR 82 Query: 334 EKEKR------AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGAL 387 + + +FY ++++ F+ ++PTL N+G QLS+CF+ V D + IF A+ Sbjct: 83 IFNDQADTAGLSDQFYRMMTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAV 142 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + A++ K GG G ++ +R + T G S G I F++V + + QGG R+GA Sbjct: 143 KFTALIHKSGGGTGFSFSRLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGA 202 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 L H D+ F+ + D+ + ++ N + + ++FM V + + L +P + Sbjct: 203 NMGILRVDHPDIMNFIMCKA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRD- 257 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 +V ++A ++ +++ +E G P I F D Sbjct: 258 --------------------------GQVIGTLNARKVFDRIVAQAWENGEPGIVFLDRL 291 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 N +P H+GV+ S+N C E L CNLGSINL N + ++ +L + Sbjct: 292 NRDNPTPHIGVIESTNPCGEQPLLPY----ESCNLGSINLGKMVINGEVNWKRLRDVVNL 347 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AV LDNV++IN + + + +R IGLG+MG+ L L IPY S A+E+A+E M Sbjct: 348 AVHFLDNVVEINQYPLPIIAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVM 407 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 +FI+ AS LA++RG + +FK SL+D QG P Sbjct: 408 KFINTEGHDASHALAKKRGPFPNFKESLYDKQGKAP------------------------ 443 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSF 805 +RN+ IAPT TI+ I S ++P + Y++ M D +N F Sbjct: 444 -----------IRNATVTTIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPF 492 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 K+R + + ++ + G+I +++ +P D++ + TA +I P I + QK Sbjct: 493 FEAMAKERGFYSKELMRKIAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQK 551 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 + D A S + + + ++R A+ + K R S + ST K + + Sbjct: 552 YTDNAVSKTVNFAHTATIDDVAKVFRLAYQLDCKGVTIYRDGSRDNQVLSTGKEREQPVQ 611 Query: 925 AVPVTDPNSSTHSLGIP 941 Sbjct: 612 KSMPEGSKLVKRERPKA 628 >gi|167769961|ref|ZP_02442014.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM 17241] gi|167667795|gb|EDS11925.1| hypothetical protein ANACOL_01302 [Anaerotruncus colihominis DSM 17241] Length = 761 Score = 398 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 177/668 (26%), Positives = 290/668 (43%), Gaps = 87/668 (13%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343 L +L RY G IE + F RVA +A + + FY Sbjct: 7 MKIGKNALTVLERRYLKKDEHGENIETVEQMFRRVADAIASADAAYSGKTDVAALSNRFY 66 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 ++++ F+ ++PTL N+G QLS+CF+ V D + IF A+++ A++ K GG G Sbjct: 67 EMMTNLEFLPNSPTLMNAGKELGQLSACFVLPVGDSMEEIFEAIKQAALIHKSGGGTGFS 126 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F++V N AV QGG R+GA L H D+ EF+ Sbjct: 127 FSRLRAAGATVRSTGGVASGPVSFMRVFNMATEAVKQGGTRRGANMGILRIDHPDILEFI 186 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D +KN D + N + I + FM+ V Q + L P Sbjct: 187 DCKKNNAD----ITNFNISVGITEEFMQAVQQGNAYELVDPKTKQA-------------- 228 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 ++ A ++ K++ + G P I F D N + G + S+N Sbjct: 229 -------------VGQLDAREVFDKIVESAWRNGEPGIIFLDRLNRDNVVPSQGEIESTN 275 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL+ DYDKL T+R AV LDNVID+N Sbjct: 276 PCGEQPLLPY----ESCNLGSINLVNMLKCENGAYAVDYDKLGRTVRDAVHFLDNVIDVN 331 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + + R IGLG+MG+ L L +PY S EAV +A MEFI+ + S Sbjct: 332 KYPLAEIDVTTKQTRKIGLGVMGWSDMLAYLGVPYNSDEAVALARRVMEFITKTGRAESA 391 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+ RGA+ F+ S++ G +R Sbjct: 392 ELAKVRGAFPLFEKSIYAGGTP------------------------------------LR 415 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 N+ IAPT T++ I G S ++P + +++++ M G + VN L L+ R L+ + Sbjct: 416 NATVTTIAPTGTLSIIAGCSSGVEPVFAYVFIRNVMDGTEMIEVNPVLKEILEARGLYSD 475 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ + +GS+ +IE IP D++++ + ++ P++ + + Q++ D A S + Sbjct: 476 GLMKKIAA-EGSLQHIEEIPADIRRVFVCSHDVSPLYHTKMQAAFQQFTDNAVSKTVNFK 534 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDGKLNAVPVTDPNSST 935 + + + + +Y ++ +G K R S S + ++K G Sbjct: 535 HDATIEDVREVYMLSYELGCKGVTIYRDGSRDSQVLNIGSVKKEGGAPAKAEQPAGFGQI 594 Query: 936 HSLGIPSS 943 P Sbjct: 595 KPRPRPEV 602 >gi|57234895|ref|YP_181092.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides ethenogenes 195] gi|57225343|gb|AAW40400.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] Length = 761 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 179/660 (27%), Positives = 286/660 (43%), Gaps = 85/660 (12%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFY 343 + +L RY G E + F RVA +A+ E R EFY Sbjct: 20 LKLTDNAMCVLERRYLKKDKQGKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFY 79 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 N+++ F+ ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 80 NIMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R + T G + G + F++ + + QGG R+GA A L H D+ +F+ Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFI 199 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D + N + I D FM+ V + L +P Sbjct: 200 ----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLLNPH------------------ 237 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V +++A ++ K++ M ++TG P I F D N +P +G + S+N Sbjct: 238 ---------NGEVVSRLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL DY KL+ +++AVR LDNVID+N Sbjct: 289 PCGEQPLLPY----ESCNLGSINLSRMVTVSGGQAVVDYKKLSRVVKSAVRFLDNVIDVN 344 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + ++ R IGLG+MGF L L IPY S ++++A+E M F++ A S Sbjct: 345 KFPLPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNEEAHKFSS 404 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA ERG + +++GS++++ P MR Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 N++C IAPT T++ I G S I+P + + ++ + G VN + K+ + E Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 +I L G+ + +P + K++ TA +I P W + + QK D A S + Sbjct: 490 ELIKSLAE--GAHLDEADVPAEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 E + +Y+ A LK R S ST K + V +PN + Sbjct: 548 REAVEGDVAEVYKMAHDSNLKGITIYRDGSREDQPMSTGKAENKIETPAAVVNPNLAPRK 607 >gi|212704402|ref|ZP_03312530.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098] gi|212672123|gb|EEB32606.1| hypothetical protein DESPIG_02457 [Desulfovibrio piger ATCC 29098] Length = 756 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 172/654 (26%), Positives = 287/654 (43%), Gaps = 92/654 (14%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFMC 353 L RY E P+ F RVA +A +E + E+ A +FY+L++S+ F+ Sbjct: 22 LQKRYLHKKADGSTETPRDLFWRVASAIAAEEAKYERSPFTAEDLARQFYDLMTSWRFLP 81 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 ++PTL N+ + QLS+CF+ V D + IF A++ AM+ K GG G ++ +R + Sbjct: 82 NSPTLMNAASELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFSRLRPKASR 141 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + T G + G + FL++ N + QGG R+GA L H D+ EF+ ++ G+ Sbjct: 142 VGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDIVEFIRAKEKEGE-- 199 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 ++ N + + + FM+ V ++ + L P Sbjct: 200 --FNNFNLSVGLTEAFMQAVERDENYELTDPHT--------------------------- 230 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 KV + A ++ ++ ++TG P I F D N +P G + S+N C E L Sbjct: 231 GKVTGSLRAREIFDLLVCRAWQTGDPGIVFLDRINRDNPTPAQGEIESTNPCGEQPLLPY 290 Query: 594 SEETAVCNLGSINLLAHFANNQ----------FDYDKLASTIRTAVRVLDNVIDINCHTI 643 CNLGSINL F D+D L + AVR LDNVID + + Sbjct: 291 ----EACNLGSINLACFFVPGHASDEDPAAAGIDWDGLKQVVHLAVRFLDNVIDASRFPL 346 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ ++ +R IGLG+MGF L L IPY S + +A+ M FI+ +AS LA+ Sbjct: 347 DRIDETVRRNRKIGLGVMGFADLLFQLGIPYDSEAGIALAERIMGFINAEGHAASARLAE 406 Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG + ++ S++ Q G P RN+ Sbjct: 407 ERGPFPAYAESVFPQRGEGP-----------------------------------YRNAT 431 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821 IAPT T++ I G S ++P + + ++ + G+ VN + LK+ L ++ Sbjct: 432 VTTIAPTGTLSIIGGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALKEAGLGTPELM 491 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 + GSI +++ +P ++K+ TA +IDP+W + + Q+ D A S + L Sbjct: 492 EQVVE-KGSIQSLDALPAAMRKVFVTAMDIDPVWHLRMQAAFQRHTDNAVSKTVNLPHSA 550 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + + + IY A+ G K R + +T +G K++ Sbjct: 551 TEQDIHDIYWLAYKEGCKGVTVYRDGCKSLQVLATGEG-QKKMDGEAPAPAEKP 603 >gi|161347547|ref|YP_462506.2| ribonucleotide-diphosphate reductase subunit alpha [Syntrophus aciditrophicus SB] Length = 743 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 169/659 (25%), Positives = 291/659 (44%), Gaps = 81/659 (12%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFYNL 345 +++L RY +G+ +E P F RVA +A + + + +FY + Sbjct: 13 LTDNAIKVLGRRYLKRDRDGNALETPSQMFKRVADTIAAADRIFNDQADTAGLSDQFYRM 72 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 73 MTALEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEDIFDAVKFTALIHKSGGGTGFSFS 132 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G I F++V + + QGG R+GA L H D+ F+ Sbjct: 133 RLRPANDVVLTTTGISSGPISFMRVFDVATETIKQGGTRRGANMGILRVDHPDIMNFIMC 192 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D+ + ++ N + + ++FM V + + L +P + Sbjct: 193 KA----DKHQLNNFNISVGLTEVFMAAVEADQDYDLVNPRD------------------- 229 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V ++A ++ +++ +E G P I F D N +P H+GV+ S+N C Sbjct: 230 --------GQVIGTLNARKVFDRIVAQAWENGEPGIVFLDRLNRDNPTPHIGVIESTNPC 281 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL N + ++ +L + AV LDNV++IN + + Sbjct: 282 GEQPLLPY----ESCNLGSINLGKMVINGEVNWKRLRDVVNLAVHFLDNVVEINQYPLPI 337 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + +R IGLG+MG+ L L IPY S A+E+A+E M+FI+ AS LA++R Sbjct: 338 IAEMTFGNRKIGLGVMGWADMLIQLGIPYNSDRALELAEEVMKFINTEGHDASHALAKKR 397 Query: 706 GAYSSFKGSLWD-QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 G + +FK SL+D QG P +RN+ Sbjct: 398 GPFPNFKESLYDKQGKAP-----------------------------------IRNATVT 422 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I S ++P + Y++ M D +N F K+R + + ++ Sbjct: 423 TIAPTGTISIIANASSGVEPLFAVSYIRQVMDNDILLEINPFFEAMAKERGFYSKELMRK 482 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + G+I +++ +P D++ + TA +I P I + QK+ D A S + + Sbjct: 483 IAER-GTIRDLDEVPQDIQAVFVTAHDISPEVHIGMQAAFQKYTDNAVSKTVNFAHTATI 541 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 + ++R A+ + K R S + ST K + + Sbjct: 542 DDVAKVFRLAYQLDCKGVTIYRDGSRDNQVLSTGKEREQPVQKSMPEGSKLVKRERPKA 600 >gi|225849392|ref|YP_002729556.1| ribonucleoside-diphosphate reductase subunit alpha (ribonucleotide reductase) [Sulfurihydrogenibium azorense Az-Fu1] gi|225643585|gb|ACN98635.1| ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase) [Sulfurihydrogenibium azorense Az-Fu1] Length = 1222 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 212/555 (38%), Positives = 318/555 (57%), Gaps = 40/555 (7%) Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 +C++ + D L I +E A LAKY+GG+G D T +R G+ IH N KS G+IPF+ Sbjct: 643 HNCYVNVIDDSLESIMDKAKETAFLAKYAGGVGTDVTRIRATGSKIHSLNAKSSGIIPFI 702 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ + A+ QGG+R+ + YL+ WH+DVE FLDLR+ TG+ RT +NTA W+PD Sbjct: 703 KIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPDE 762 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 M+R+ + LF P E L +G+EF+ YE+ +A++GE+K+++KI + ++K Sbjct: 763 LMRRIKEGEPIYLFDPAECPKLVTAWGEEFKKEYESCIEKAEKGELKLWKKIDSRDFYKK 822 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLL 608 L L +TGHPW+TFKD N ++P V++SSNLCTEI++ +S E TAVC L S+NL Sbjct: 823 YLFKLAKTGHPWLTFKDRHNEKNPCPQYSVINSSNLCTEISIPNSPESTAVCTLASVNLA 882 Query: 609 AHFANN--QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 H + FD+DKL T+ T V LDN++D N + E+++K+ R IG+G+MGF A Sbjct: 883 RHVKEDKSDFDWDKLKDTLETMVVALDNILDKNFYPSEESRKNTMDLRPIGIGVMGFHEA 942 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L L IPY S +AVE A + +F+ + S ELA+ERGA+ + + ++ Sbjct: 943 LIKLGIPYDSDKAVETARKIAKFMREVTYAKSEELAKERGAFPHYYEANYNYPP------ 996 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 RN+ +A+APTA+I+ I G S SID + Sbjct: 997 -------------------------------RRNAVLLAVAPTASISIIAGTSSSIDNYF 1025 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDL-KKIH 845 N++ + +SG F V+N L+ EL+++ LW E + +K H GSI IE + + K ++ Sbjct: 1026 SNIFSRDTLSGKFIVINKPLMKELEEKGLWSEELAEKIKAHQGSIQYIEELDGKIDKSLY 1085 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 TA+E+ P I+ A+ Q++IDQA S +LY++E K++ IY AW GLK+TYY Sbjct: 1086 KTAYEVSPYRQIDIAAAFQEYIDQAVSKSLYIEEDLRDKMEDIYMYAWEKGLKSTYYCFI 1145 Query: 906 RSATSVEKSTLKGVD 920 EK TL Sbjct: 1146 DKTVKGEKYTLNVNK 1160 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 26/231 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202 ++ DG++ F K+L + GL+ ++ + K + + ++ +L+ + Sbjct: 5 VVKRDGSVEKFQMKKLVDAIFALLEGLELPDDYEIVFKVAKELDLKIPEKVTTEELDYLV 64 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + LI K Y + R LL+ + R + F YI Sbjct: 65 LKAIEHLIPKNYIYDTLATRQLLKIINRRIDRRF-----------------NSFKDYINY 107 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-SRIEMPQAFF 321 V+ +LL ++ FD+ L + Y RD+ +Y GL L DRY + IE PQ FF Sbjct: 108 AVEEKLLKPELLQFDIDRLEKSIDYSRDYNLDYFGLSTLKDRYLMKDRDFETIEKPQWFF 167 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 MRVAMG+ E E ++ YN LS+ ++ STPTLFNSGT Q SSCF Sbjct: 168 MRVAMGIGNTEDE----IIKIYNKLSNLEYLHSTPTLFNSGTLTNQYSSCF 214 >gi|157825768|ref|YP_001493488.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia akari str. Hartford] gi|157799726|gb|ABV74980.1| ribonucleotide-diphosphate reductase alpha subunit [Rickettsia akari str. Hartford] Length = 607 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 199/670 (29%), Positives = 295/670 (44%), Gaps = 95/670 (14%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 G IL DRY + E Q F RV+ A ++ A + Y +S FM + Sbjct: 23 PFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYEYMSKMWFMPA 73 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 TP L N GT SCFL D L I EN LA GG+G+ W VR + I Sbjct: 74 TPILSNGGTDRGLPISCFLNETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRSINEGI 133 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDR 473 G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D+R+ TG D Sbjct: 134 RD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVN 192 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R+ +++ I D FMK V N + L SP Sbjct: 193 RKALNIHHGIAITDEFMKAVENNTDFDLISPAT--------------------------- 225 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590 KV KI A LW K+LT ETG P++ F D N P+ H V SNLC+EITL Sbjct: 226 KKVVNKIRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITL 285 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK--- 647 + + L + ++ I + + LDNV++ + Sbjct: 286 PTGIDHLGKSRTAVCCLASLNLEYYEEWKDDKEFIYSIMLFLDNVLEDFINKAPNTMARA 345 Query: 648 -KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 S R++GLG+MGF S L + +P S A + E+IS A AS+E+ +E+G Sbjct: 346 KYSALRERSVGLGVMGFHSFLQIKKVPIESVMAKVWNKKIFEYISAEADKASIEIGKEKG 405 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A D++ + R SN AI Sbjct: 406 ACP--------------DALDAGSNER--------------------------FSNKTAI 425 Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 426 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 485 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884 H+GS+ ++ + + K++ TA+EID WLIE AS R +I QAQSLN+++ S K Sbjct: 486 THEGSVQHLTFLSEAEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFVPGNVSKKY 545 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 L+ I+ +AW G+K+ YY RS S +K + + + + + Sbjct: 546 LNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHDILKADFKDLEKQNDKLTEAG------- 598 Query: 945 TSDTECEVCQ 954 + EC CQ Sbjct: 599 -NYEECLSCQ 607 >gi|116754614|ref|YP_843732.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta thermophila PT] gi|116666065|gb|ABK15092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta thermophila PT] Length = 688 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 190/781 (24%), Positives = 313/781 (40%), Gaps = 138/781 (17%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVS-------SKIVLSETYKNMYDGLSESDL 198 +I DG ++ F+ R+ + +A + L V + V+ + D + + Sbjct: 15 RIRKRDGRIVDFDPSRISRAISKAFNALGIVDEKTPVELAGRVVDVVDERFRDEIPSVED 74 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 ++ + + YA+V Sbjct: 75 VQDIVEE----VLIDAGYAQVAK------------------------------------- 93 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMP 317 + ++ + L D +++L RY G+ +E P Sbjct: 94 --------AYILYRQRRSEIREAKHYLGVADDLKLSVNAIEVLKKRYLKRDEFGNVVETP 145 Query: 318 QAFFMRVAMGLALKETEKE----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA ++ E E +F +++ S F+ ++PTL N+G QLS+CF+ Sbjct: 146 GEMFERVASAVSAVERRYEGDADDARKKFLSMMRSLSFLPNSPTLMNAGLPLGQLSACFV 205 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + GIF AL+ A++ + GG G ++ +R G + T G + G + F+++ + Sbjct: 206 VPVEDSIAGIFDALKYMALIHQSGGGTGFSFSRLRPKGDVVRSTGGIASGPVSFMRIFDA 265 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + QGG+R+GA L H D+ EF+ + DR + N + I + FM++ Sbjct: 266 ATDVIKQGGRRRGANMGILRVDHPDITEFIACK-----DRGGMDNFNISVAITEEFMRQC 320 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ L +P + ++SA L M T Sbjct: 321 ERDGSVELINPRT---------------------------GEATGEMSARDLMVMMATYA 353 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 + G P + F D N P G++ ++N C E L CNLGS+NL Sbjct: 354 WRRGDPGVVFIDRINALHPVP--GIIEATNPCGEQPLLPF----ESCNLGSVNLSRMVER 407 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + +D+L T+R AVR LD+VID N +++ + + R IGLG+MGF L L + Sbjct: 408 GEISWDRLEETVRLAVRFLDDVIDANRFPLKQIEDATLRTRKIGLGVMGFAEMLIQLGVS 467 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 YAS +A+ IA+E M FI+ A S L +ERG++ F+ S Sbjct: 468 YASQDALRIAEELMAFITKTAREESCALGRERGSFPLFEES------------------- 508 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 S WD MRN+ IAPT TI+ I G S I+P + +V+ Sbjct: 509 --------SLKKWDA---------MRNATVTTIAPTGTISIIAGTSSGIEPLFAVSFVRH 551 Query: 794 NMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G + +R + A+ +++ GSI I IPDD+K++ TA +I Sbjct: 552 VLEGARLIESSPLFERMASERGIMTPALRAEVARR-GSIQEIPGIPDDIKELFLTALDIS 610 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P + + QK D A S + L E S + +YR A+ +G K R S V Sbjct: 611 PEQHVRIQAAFQKHTDNAVSKTVNLPEKASVSDVIKVYRLAYELGCKGITVYRYGSREQV 670 Query: 912 E 912 Sbjct: 671 L 671 Score = 132 bits (332), Expect = 3e-28, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 11/124 (8%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++ KR+G + FDPS+ISRAI KAF A+ I + L + V + + + Sbjct: 15 RIRKRDGRIVDFDPSRISRAISKAFNAL-------GIVDEKTPVELAGRVVDVVDERFRD 67 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIA---PKLK 146 I +ED+QD VE L+ +G+ ++ + Y+LYR+ RS++R A+ + + ++ Sbjct: 68 -EIPSVEDVQDIVEEVLIDAGYAQVAKAYILYRQRRSEIREAKHYLGVADDLKLSVNAIE 126 Query: 147 IMMD 150 ++ Sbjct: 127 VLKK 130 >gi|269958630|ref|YP_003328417.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma centrale str. Israel] gi|269848459|gb|ACZ49103.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma centrale str. Israel] Length = 618 Score = 396 bits (1017), Expect = e-107, Method: Composition-based stats. Identities = 192/680 (28%), Positives = 294/680 (43%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G +L DRY L E Q F+RV+ + + A Y+ Sbjct: 29 VDRTRDNNLTSFGKAVLSDRYLLDD-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 79 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 80 YMSKLWFMPATPILSNGGTGRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 139 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + +GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 140 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 198 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ + D FM+ V Q+ W L SP + Sbjct: 199 IRKPTGGDPNRKALNIHHGVLLTDEFMRAVEQDKPWDLVSPKD----------------- 241 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A LW K+LT ETG P++ F D N P + V Sbjct: 242 ----------RCVISTVRARDLWIKILTTRVETGEPYVVFVDTVNKHKPDIYKELGLEVK 291 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEITL + + L + + + +R LDNV+ Sbjct: 292 MSNLCTEITLATGEDHLGRSRTAICCLASLNLEYYDMWSGEPLFVEDVMRFLDNVLTDFI 351 Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + IE+A+ + R+IG+G+MGF S L +P+ S A + E I A Sbjct: 352 NKAPPEIERARYAAMRERSIGVGVMGFHSFLQSKMVPFESFAASVWNKKIFEHIKRQADE 411 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA E+G D++ R Sbjct: 412 VSRKLAMEKGPCP--------------DAVDANKMER----------------------- 434 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 + ++IAPTA+I+ I G S I+P N++ ++G F V N FL L + L Sbjct: 435 ---FVHKLSIAPTASISIISGNTSPGIEPYAANVFTHKTLTGSFVVRNKFLQKLLASKGL 491 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QAQS+N+ Sbjct: 492 DNDQVWSSISTNEGSVQHLDFLTEQEKLVFRTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 551 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW G+K+ YYLRS+S +K + V G P + Sbjct: 552 FLPAGVHKRYLHKIHFLAWKKGVKSLYYLRSKSVQKADK--VSHVHGGQAVSPQRQITN- 608 Query: 935 THSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 609 ----------FDYDECLACQ 618 >gi|224539246|ref|ZP_03679785.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus DSM 14838] gi|224519128|gb|EEF88233.1| hypothetical protein BACCELL_04148 [Bacteroides cellulosilyticus DSM 14838] Length = 708 Score = 396 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 208/675 (30%), Positives = 331/675 (49%), Gaps = 75/675 (11%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +++ KRNG ++ K++ AI K+F + + I L + +L Sbjct: 1 MEITKRNGMAEPYNKEKVAIAIRKSFASTGQ------SVTDETILTLVNEVENFIL---S 51 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIM 148 H+E IQD+VE SLM+ G + + Y+LYR +R++ R A +H ++ + Sbjct: 52 DTGNRHVERIQDEVERSLMEHGFYAEAKNYILYRWQRTERRKALNHIVNETGDETITDTL 111 Query: 149 MDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMY-DGLSESDLETALIFSSR 207 G ++ S +L+E + + Y ++ ++ TALI ++ Sbjct: 112 KGIGQDFP-----------------RNEYSLTLLAEKFSSFYKPEMTPNERLTALIKAAV 154 Query: 208 TLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA 266 L +E P++ + AR L +L +++ + + +++ L +EG+ Sbjct: 155 ELTTQEAPDWEFIAARLLNFQLSKKLTEQAEFAGVLSFYEKLRYL--------TDEGLYG 206 Query: 267 RLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS-RIEMPQAFFMRVA 325 + S ++ +A + ERD F Y GL +L RY + IE Q ++ +A Sbjct: 207 SYILASYSPEEIEEVAGFICPERDKLFNYSGLDLLVKRYLIRTRSHEPIESVQEMYLGIA 266 Query: 326 MGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 + LA+ E + + +FY+LLS +TPTL N+ + QLSSCF+ TVPD L GI+ Sbjct: 267 LHLAMPERHNRLQWVRKFYDLLSKLEVTMATPTLANARKPYHQLSSCFIDTVPDSLEGIY 326 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ AM++K+ GG+G + VR G +I G G + GVI ++K+ NDTAVAV+Q G R Sbjct: 327 RSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLGMR 386 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ--NAGWTLF 502 +GAV YL+ WH D+ EFL LR N GDDR + HD+ A PDLF + + N W LF Sbjct: 387 QGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHDIFPAVCYPDLFWRMAKEDLNQSWYLF 446 Query: 503 SPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P+E+ L D YG+E+E Y + + + R +S + R +L ETG Sbjct: 447 CPNEIMTIKGYCLEDYYGEEWEKRYLDCVNDSRLSK----RSMSIKDIVRLVLRSAVETG 502 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE--------------------- 596 P+ +D N +P H G+++ SNLCTEI N S+ E Sbjct: 503 TPFTFNRDAVNRANPNNHRGIIYCSNLCTEIAQNMSAIETVSTEIRTEDGDMVVVKTVRP 562 Query: 597 --TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VCNL S++L D ++ + T VR LDNVID+N + I A+ +NH +R Sbjct: 563 GDFVVCNLASLSLGHL---PLEDEQQMKEKVATVVRALDNVIDLNFYPIPFAQITNHHYR 619 Query: 655 AIGLGLMGFQSALHL 669 +IGLG+ G+ AL Sbjct: 620 SIGLGVSGYHHALAS 634 >gi|218887121|ref|YP_002436442.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758075|gb|ACL08974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 770 Score = 396 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 179/677 (26%), Positives = 291/677 (42%), Gaps = 96/677 (14%) Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341 D A +L RY+ +G E +A F R+A +A +E + +K A E Sbjct: 21 DVALNPNARVVLAKRYYRKGPDGQPYEDARALFWRIAGAIAAEEGKYKKSPYKADALARE 80 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 81 FYDLMTGWKFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 140 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R A + T G + G + FL++ N + QGG R+GA L H D+ E Sbjct: 141 FSFSRLRPKEARVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIIE 200 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ ++ N + + + FMK V + + L +P Sbjct: 201 FIRAKERDGE----FNNFNLSVGLTEAFMKAVEADEEYDLVAPHT--------------- 241 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +V ++ A ++ ++ +E+G P I F D N +P G + S Sbjct: 242 ------------GQVRERLKARKVFEMLVQKAWESGDPGIVFLDRINRDNPTPKQGEIES 289 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----------------NQFDYDKLASTI 625 +N C E L CNLGSINL A F D+ +L I Sbjct: 290 TNPCGEQPLLPY----EACNLGSINLSAFFVPGTATAREGGLPHPSPEKAIDWAELKRVI 345 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 VR LDNVID + +E+ ++ H +R IGLG+MG+ L+ L IPY S EA+ + + Sbjct: 346 HLGVRFLDNVIDASRFPLERITETVHRNRKIGLGVMGWADLLYQLGIPYDSQEAIGLGER 405 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 M+F+ +AS LA+ERG + +F S + R Sbjct: 406 MMQFVQDEGRAASKVLAKERGPFPAFAESTFA------------------------ERDM 441 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNS 804 RN+ IAPT T++ I G S I+P + + ++ M G+ VN Sbjct: 442 GP----------YRNATVTTIAPTGTLSIIAGCSSGIEPLFALCFSRNVMDGERLVEVNP 491 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L+ + ++ + GSI ++ +P+DL++++ TA +I P+W + + Q Sbjct: 492 HFEAALRDTGSHSKKLMEAVAE-KGSIQAMDHLPEDLRRVYVTAMDIAPVWHLRMQAAFQ 550 Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 K+ D A S + L S + IY A+ G K R T +G Sbjct: 551 KYTDNAVSKTVNLPNSASIDDIRAIYWMAYEQGCKGVTVYRDGCKAVQVLCTGEGEKKDE 610 Query: 924 NAVPVTDPNSSTHSLGI 940 ++ I Sbjct: 611 GKDDGDHKSAVRQRPDI 627 >gi|118580911|ref|YP_902161.1| ribonucleotide-diphosphate reductase subunit alpha [Pelobacter propionicus DSM 2379] gi|118503621|gb|ABL00104.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pelobacter propionicus DSM 2379] Length = 744 Score = 396 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 178/636 (27%), Positives = 293/636 (46%), Gaps = 79/636 (12%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------FYNL 345 L +L RY NG+ +E F RVA +A + ++ A FY + Sbjct: 13 LSKNALTVLEKRYLRRGPNGTTLETAADMFRRVADTIAAADRSFDETADTAGLGDTFYRM 72 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++SF F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 73 MTSFEFLPNSPTLMNAGRELGQLSACFVLPVGDSMEEIFDAVKYTALIHKSGGGTGFSFS 132 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G S G + F++V + + QGG R+GA A L H D+ +F+ Sbjct: 133 RLRPANDMVSSTTGISSGPLSFMRVFDVATETIKQGGTRRGANMAILRVDHPDIVDFIMC 192 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D+++ ++ N + + + FM+ V ++ +TL +P Sbjct: 193 KA----DQKQLNNFNISVGLTEKFMQAVERDEEYTLVNPR-------------------- 228 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K ++A ++++++ +E G P I F D N +P VG + S+N C Sbjct: 229 -------NGKQHGTLNARKVFQRIVKQAWENGEPGIVFLDRLNRDNPTPQVGEIESTNPC 281 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L CNLGSINL A D+++L T+R AV LDNVI+ N + +++ Sbjct: 282 GEQPLLPY----ESCNLGSINLGKFVAEGAIDWNRLKETVRNAVHFLDNVIEANSYPLQQ 337 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 H +R IGLG+MG+ L LL IPY+SPEAV++ + M+FI+ AS EL + R Sbjct: 338 IHDMTHGNRKIGLGVMGWADMLILLGIPYSSPEAVKLGTKVMKFINDEGRLASRELGKVR 397 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G++ +F GS +D MRN+ Sbjct: 398 GSFPNFTGSTFDIKDAEP----------------------------------MRNATVTT 423 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV-VNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ I S ++P + Y+++ M + V VN K+R + E+++ + Sbjct: 424 IAPTGTISIIANASSGVEPLFAVSYLRTVMDKNVLVEVNPHFERIAKERGFYSESLMKRI 483 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 H G++ I +P D++++ TA +I P I+ + Q D A S + + + Sbjct: 484 AEH-GTVQGIPEVPQDVQEMFVTAHDISPNDHIQMQAAFQLHTDNAVSKTVNFPNSATIE 542 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 ++ +YR A+ G K R S ST K Sbjct: 543 DVENVYRLAYQTGCKGVTIYRDGSRDEQVLSTAKKD 578 >gi|167648616|ref|YP_001686279.1| ribonucleotide-diphosphate reductase subunit alpha [Caulobacter sp. K31] gi|167351046|gb|ABZ73781.1| ribonucleoside-diphosphate reductase, alpha subunit [Caulobacter sp. K31] Length = 616 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 193/679 (28%), Positives = 297/679 (43%), Gaps = 98/679 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD G L DRY L E Q F RV+ A + A Y+ Sbjct: 27 VDRSRDALLTDFGKTTLEDRYLL-----PGESYQDMFARVSTAFA----DDADHAQRVYD 77 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM STP L N G SCFL V D L GI G EN LA GG+G W Sbjct: 78 YMSKLWFMPSTPVLSNGGAERGLPISCFLNAVSDSLDGILGVWNENVWLAANGGGIGTYW 137 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR +G + G G++ G+IPF++V + +A++QG R+G+ YL+ +H ++EEFL+ Sbjct: 138 GGVRSIGEKVKGQ-GQTSGIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIFHPEIEEFLE 196 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK +GD R++ +++ I D FM V + L SP Sbjct: 197 IRKASGDFNRKSLNLHHGISITDEFMHAVRDGHKFGLRSPKT------------------ 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHS 581 +V R++ A ALW+K+L + +TG P++ F D N P+ V Sbjct: 239 ---------GEVLREVDARALWQKVLELRLQTGEPYLIFSDTVNRAMPKHQQELGLKVRQ 289 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----ID 637 SNLC+EI L++ + L + A ++ I +R LDNV ID Sbjct: 290 SNLCSEIMLHTGVDHLGNDRTAVCCLSSVNAETFLEWRDHPMFIEDIMRFLDNVLQDFID 349 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 A + R++GLGLMGF S L ++P+ S A + + A A Sbjct: 350 RAPDAAATAAYAAMRERSVGLGLMGFHSFLQSQNVPFESALAKSWNMRMFKHLRREADKA 409 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S+ + +E+G A R + Sbjct: 410 SITIGEEKGPCP-------------------DAADRGSME-------------------- 430 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ +AIAPTA+I+ ICG S I+P N+Y +SG F V N +L L+++ Sbjct: 431 -RFSHKLAIAPTASISIICGGTSAGIEPIPANIYTHKTLSGSFAVKNPYLEKVLEEKGHN 489 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 +A+ + ++GS+ +++ + D K ++ TAFE+D W++E A+ R + Q+QS+N++ Sbjct: 490 TDAVWGSILENEGSVQHLDFLSQDDKDVYKTAFELDQRWVVELAADRTPEVCQSQSVNIF 549 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 L + L ++ QAW G+K+ YYLRS+S + + Sbjct: 550 LPGDVDKWDLHMLHWQAWERGVKSLYYLRSKSVQRA------------SYAGSDVALAGP 597 Query: 936 HSLGIPSSCTSDTECEVCQ 954 + S T EC CQ Sbjct: 598 ANGFDAPSKTDYEECLACQ 616 >gi|289579197|ref|YP_003477824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter italicus Ab9] gi|289528910|gb|ADD03262.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter italicus Ab9] Length = 770 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 185/659 (28%), Positives = 288/659 (43%), Gaps = 89/659 (13%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343 ++L RY NG IE + F RVA +A + E FY Sbjct: 1 MKITENAKKVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G Sbjct: 61 DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D + N + I + FMK V ++ + L P Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDRKYDLIDPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N Sbjct: 220 ----------GKVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL + DYDKL T+ AV LDNVID N Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYEIDYDKLKETVYDAVHFLDNVIDAN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + ++ R IGLG+MGF + L L IPY S EAVE+ +E MEFI + AS+ Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEELMEFIDKTSKEASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM- 758 +LA++RG + + S++ K G+ Sbjct: 386 KLAEKRGTFGFYDKSIY-------------------------------------KKTGIK 408 Query: 759 -RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLW 816 RN+ IAPT TI+ I G S I+P + ++ M VN +R + Sbjct: 409 IRNATTTTIAPTGTISIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKKVAIERGFY 468 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + ++ ++ GS+ +I+ IP+D+K++ A +IDP W ++ + QK +D A S + Sbjct: 469 SDELMREIA-QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVN 527 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNS 933 +E + + + Y A+ +G K R S + V +K + Sbjct: 528 FRNEATVEDVRRTYLLAYKLGCKGVTIYRDGSRESQVLNLGIKEKKEEAKPTEEQTKKE 586 >gi|42520094|ref|NP_966009.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696744|ref|ZP_00372286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila simulans] gi|58698281|ref|ZP_00373199.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila ananassae] gi|99036013|ref|ZP_01315053.1| hypothetical protein Wendoof_01000107 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630021|ref|YP_002726812.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp. wRi] gi|42409831|gb|AAS13943.1| ribonucleoside-diphosphate reductase, alpha subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535205|gb|EAL59286.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila ananassae] gi|58537070|gb|EAL60196.1| Ribonucleotide reductase, barrel domain [Wolbachia endosymbiont of Drosophila simulans] gi|225592002|gb|ACN95021.1| ribonucleotide-diphosphate reductase alpha subunit [Wolbachia sp. wRi] Length = 594 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 193/680 (28%), Positives = 300/680 (44%), Gaps = 101/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y +D G +L DRY + E Q F R+A + + A Y+ Sbjct: 6 INYAKDSKLTDFGKAVLSDRYLIEN-----ESYQDLFARIANYYSDNKE----HAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM STP L N GT+ SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 117 GNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ A + D FM+ V + W L SP Sbjct: 176 LRKPTGGDPNRKALNIHHAVIVTDKFMQAVENDQEWNLISPHNN---------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV + A +W K+LT ETG P+I F D N P+ + + Sbjct: 220 -----------KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIK 268 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + ++ I +R LDNV++ Sbjct: 269 MSNLCSEITLTTGYDHLNKSRTAVCCLSSVNLEYYEEWKDNKLFIEDIMRFLDNVLEDFI 328 Query: 641 HTIEKAKKSNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + R+IGLG+MGF S L +P+ S A + + +++ A Sbjct: 329 NKAPNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADI 388 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA+E+GA S D ++ R Sbjct: 389 VSKKLAEEKGACS------------------------DAKEVDLMER------------- 411 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 ++ +AIAPTA+I+ I G S I+P N++++ ++G F V N FL L +++ Sbjct: 412 ---FTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQ 468 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + + K TA+E+D W+IE AS R +I Q+QS+NL Sbjct: 469 DNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASDRTSYICQSQSVNL 528 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW GLK+ YY RS+S +K + TD Sbjct: 529 FLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD---- 584 Query: 935 THSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 585 ----------IDYDECLSCQ 594 >gi|88608409|ref|YP_506298.1| ribonucleotide-diphosphate reductase subunit alpha [Neorickettsia sennetsu str. Miyayama] gi|88600578|gb|ABD46046.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia sennetsu str. Miyayama] Length = 605 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 196/683 (28%), Positives = 300/683 (43%), Gaps = 113/683 (16%) Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + RD G +L DRY + E Q F RVA + + K A Y+ + Sbjct: 21 HARDSFLTDFGKAVLKDRYLQNG-----EDYQGLFARVAKYYS----DDPKHACRLYDYM 71 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S+ FM +TP L N GT SCFL D L GI G EN LA + GG+G+ W Sbjct: 72 SNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNENVWLASHGGGVGSYWGN 131 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +G + +GK+ G+IPF+ V N +A++QG R+G+ YL H ++ EF+DLR Sbjct: 132 LRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVNHPEIIEFIDLR 190 Query: 467 KNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 K TG D R+ +++ A I D FMK V ++ W L SP + Sbjct: 191 KPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKD------------------- 231 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSS 582 V + A +W ++LT ETG P+I F D P + V S Sbjct: 232 --------GSVIATVGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMS 283 Query: 583 NLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 NLC+EITL + + TA+C L S+NL ++ +R + LDNV++ Sbjct: 284 NLCSEITLTTGKDHLDNHRTAICCLSSLNLEKFDE-----WEHNEQFVRDVMHFLDNVLE 338 Query: 638 INCHTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 S R+IGLG+MGF S L IP+ S A + + + I Sbjct: 339 DFIRKAPDCMHRARYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFKKIKHE 398 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A S E+A ERG +D + + R Sbjct: 399 ADKISKEMALERGPC------------------------KDAVDCDTMER---------- 424 Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 + +A+APTA+I+ I G S I+P N++ + +SG F V N L L++ Sbjct: 425 ------FVHKIAVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAALLER 478 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + + + S + ++GS+ +++ + ++ K + TA+E+D W+IE A+ R +I Q+QS Sbjct: 479 KGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQSQS 538 Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +NL+L K+L ++ W GLK+ YY RS+S K + + PV + Sbjct: 539 VNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQRAYKISQEYKHKSDTPSPVGES 598 Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954 +C CQ Sbjct: 599 ----------------DDCIACQ 605 >gi|297545362|ref|YP_003677664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843137|gb|ADH61653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 770 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 176/657 (26%), Positives = 279/657 (42%), Gaps = 85/657 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343 ++L RY NG IE + F RVA +A + E FY Sbjct: 1 MKITENARKVLERRYLAKDENGKPIETVEEMFERVARTIAEVDLIYDKNADVEAVKKRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G Sbjct: 61 DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGATVRTTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D + N + I + FMK V ++ + L P Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDKKYDLIDPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N Sbjct: 220 ----------GKVTNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL + DYDKL T+ AV LDNVID N Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYEIDYDKLRETVYDAVHFLDNVIDAN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + ++ R IGLG+MGF + L L IPY S EAVE+ ++ MEFI + AS+ Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVELGEKLMEFIDKTSKEASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA++RG + + S++ + I + Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGINIRNATTTTIAPTGTI---------------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDE 818 + I G S I+P + ++ M VN +R + + Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTQLVEVNPVFKEVAIERGFYSD 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ ++ GS+ +I+ IP+D+K++ A +IDP W I+ + QK +D A S + Sbjct: 471 ELMREIA-QKGSLKDIKGIPEDVKRVFVIAHDIDPEWHIKMQAAFQKHVDNAVSKTVNFR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNS 933 +E + + + Y A+ +G K R S + V +K + Sbjct: 530 NEATVEDVRKTYLLAYKLGCKGVTIYRDGSRESQVLNLGIKEKKEEAKPREEQTKKE 586 >gi|57239292|ref|YP_180428.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia ruminantium str. Welgevonden] gi|58579256|ref|YP_197468.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia ruminantium str. Welgevonden] gi|57161371|emb|CAH58294.1| putative ribonucleoside-diphosphate reductase alpha chain [Ehrlichia ruminantium str. Welgevonden] gi|58417882|emb|CAI27086.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia ruminantium str. Welgevonden] Length = 595 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 203/680 (29%), Positives = 297/680 (43%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + YERD G +L DRY L E Q F+R++ A A Y+ Sbjct: 6 VDYERDNNLTVFGKAVLSDRYLLEN-----EDYQQLFVRISEYYADNSE----HAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 117 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ + D FMK V +A W L SP + Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQ---------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A +W K+LT ETG P+I F D N P+ + + Sbjct: 220 -----------SVIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 SNLCTEITL + + L + + I +R LDNV I Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYYEQWKDNELFIEDVMRFLDNVLTDFI 328 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + +E+AK S R+IG+G+MGF S L IP+ S A + I HA + Sbjct: 329 EKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATMWNKKIFSHIKKHADA 388 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +A E+G D V Sbjct: 389 ASYRIAIEKGPCP-------------------------------------DAKDAGVME- 410 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R N ++IAPTA+I+ I G S I+P N++ ++G F V N FL L + Sbjct: 411 --RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLILKGE 468 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + D K + TA+E+D W+IE +S R K+I QAQS+N+ Sbjct: 469 NNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQAQSVNI 528 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW GLK+ YY RS+S +K + ++ + Sbjct: 529 FLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADKVSRGALEKSIEQCKQITN--- 585 Query: 935 THSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 586 ----------FDYDECLSCQ 595 >gi|270307717|ref|YP_003329775.1| ribonucleotide reductase [Dehalococcoides sp. VS] gi|270153609|gb|ACZ61447.1| ribonucleotide reductase [Dehalococcoides sp. VS] Length = 761 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 183/660 (27%), Positives = 289/660 (43%), Gaps = 85/660 (12%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFY 343 + +L RY G E + F RVA +A+ E R EFY Sbjct: 20 LKLTDNAMCVLERRYLKKDKQGKPTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFY 79 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 NL++ F+ ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 80 NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R + T G + G + F++ + + QGG R+GA A L H D+ +F+ Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFI 199 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D + N + I D FM+ V A + L +P Sbjct: 200 ----HAKDKAGVLTNFNLSVAITDKFMQAVKDGADYDLLNPH------------------ 237 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V ++A ++ K++ M ++TG P I F D N +P +G + S+N Sbjct: 238 ---------NGEVVSCLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL + DY KL+ I++AVR LDNVID+N Sbjct: 289 PCGEQPLLPY----ESCNLGSINLSRMVTVSGGKSTVDYKKLSRVIKSAVRFLDNVIDVN 344 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + ++ R IGLG+MGF L L IPY S ++++A+E M F++ A S Sbjct: 345 KFPLPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNDEAHKFSS 404 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA ERG + +++GS++++ P MR Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 N++C IAPT T++ I G S I+P + + ++ + G VN + K+ + E Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 +I L G+ + +PD+ K++ TA +I P W + + QK D A S + Sbjct: 490 ELIKSLAE--GAHLDEADVPDEAKELFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547 Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 +G+ + +Y+ A LK R S ST K + V +PN Sbjct: 548 RDAGECDVADVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAAVVNPNLMPRK 607 >gi|297582632|ref|YP_003698412.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus selenitireducens MLS10] gi|297141089|gb|ADH97846.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus selenitireducens MLS10] Length = 735 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 235/755 (31%), Positives = 346/755 (45%), Gaps = 114/755 (15%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 EP++ A E L T + +A +P + G+ L E Sbjct: 33 EPHWTYKAAALFAEDLYESAAKTRHLNTGEAYED-----FPGLIFEGVRLGLYDNRLTEY 87 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALK 331 +L A+ L ++D F Y GL +L DRY +G E+PQ F+ +A+ L + Sbjct: 88 YSPAELDEAASMLNPDQDRLFTYPGLFLLADRYLTRTTDGELFELPQERFLVIALVLMMH 147 Query: 332 E--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 E ++ E Y +S + +TPTL N+G H QLSSCF+ TV D L GI+ + Sbjct: 148 EPQEKRLALVREAYWAMSHLYMTVATPTLANAGKSHGQLSSCFIDTVDDSLDGIYLNNWD 207 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 A L+K GG+G + VR LG+ I G G S GVIP+++ N+TAV+V+Q G+R+GA+ Sbjct: 208 IARLSKDGGGIGVYYGKVRALGSDIKGFKGNSSGVIPWIRQLNNTAVSVDQLGQRQGAIA 267 Query: 450 AYLETWHIDVEE-FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN-------AGWTL 501 YL+ +H D+ FLDL+ N GD+RR+ HD+ T +PDLFMK++ + W + Sbjct: 268 VYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVCLPDLFMKKLEETDENGRSIGEWHV 327 Query: 502 FSPDEVSDLH-----------------DLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 F P EV + + F YE +A + A+ Sbjct: 328 FCPHEVKQIMGWKDKDGNPLGLEDFFDEADRPYFTEKYE----EAVHHPLLPRETYRAMD 383 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-----VHSSNLCTEITLNSSSE---- 595 + +M+ ETG P+ ++D N ++P + G ++SSNLCTEI N S Sbjct: 384 IMARMMVSQLETGTPYFFYRDEVNRQNPNKIAGEPGRTTIYSSNLCTEIAQNMSPSVITK 443 Query: 596 ----------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 + VCNL S+NL D D L I +R+LDNVID+N Sbjct: 444 EYETEEGDQVIVRKPGDFVVCNLSSVNLGNA-----GDPDILKRLIPIQMRMLDNVIDLN 498 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +++A+++N +RA+GLG G+ L I + S EAV+ AD E I++ AI AS Sbjct: 499 QLPVQQARRTNSRYRAVGLGTFGWHHYLAKNQIHWESDEAVQEADRLYETIAYLAIEASA 558 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 LA+E+GAY +FKGS W+ G + W LKK V G+R Sbjct: 559 ALAREKGAYPAFKGSEWESGR--------------YFERRGYTSANWQTLKKTVSESGVR 604 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 N MA+AP ++ A I G + IDP Y + + + F V Sbjct: 605 NGWMMAVAPNSSTAKIGGSTDGIDPLYAVEFAEEKKNFKFLVTAP--------------- 649 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + + T +D W I + RQK IDQ S NLY+ Sbjct: 650 ----------------ELDHNTYPYYQKTRHTLDQTWSIRQNAARQKHIDQGVSFNLYVH 693 Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 K+L ++ +AW GLKTTYY+RS S +E Sbjct: 694 HAIRAKELLSLHLEAWKQGLKTTYYIRSTSQEEIE 728 >gi|303325479|ref|ZP_07355922.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. 3_1_syn3] gi|302863395|gb|EFL86326.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. 3_1_syn3] Length = 774 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 167/664 (25%), Positives = 290/664 (43%), Gaps = 91/664 (13%) Query: 301 LYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNLLSSFHFM 352 L RY +G E P+ F RVA +A +E + E+ + E FY+L++ + F+ Sbjct: 34 LQKRYLRKSLDGKLSETPRDLFWRVASAIAAEEGKYERSSCEPEALARDFYDLMTGWKFL 93 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G ++ +R + Sbjct: 94 PNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKES 153 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + FL++ N + QGG R+GA L H D+ +F+ ++ G+ Sbjct: 154 RVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILDFIRAKEKEGE- 212 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ N + + + FM+ V ++ + L +P+ Sbjct: 213 ---FNNFNLSVGLTEAFMQAVEKDEHYDLRAPNT-------------------------- 243 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +V ++ A ++ ++ +++G P I F D N +P G + S+N C E L Sbjct: 244 -GEVVDRLRARDVFDLLVKKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLLP 302 Query: 593 SSEETAVCNLGSINLLAHFANNQFD----------YDKLASTIRTAVRVLDNVIDINCHT 642 CNLGSINL + D + +L + +VR LDNVID + Sbjct: 303 F----EACNLGSINLACFYLPGHNDDADPARDGIDWAELRRVVHLSVRFLDNVIDASLFP 358 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + ++ +R IGLG+MGF L L +PY S E + +A+ M F+ AS ELA Sbjct: 359 LPRIAETVRKNRKIGLGVMGFADLLFELGVPYNSREGIALAERVMGFVQEEGHKASAELA 418 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +ERG + ++ S + + K RN+ Sbjct: 419 KERGPFPAYPASTYA----------------------------------KAKKGPYRNAT 444 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821 IAPT T++ I G S ++P + + ++ + G+ VN + L L ++ Sbjct: 445 VTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEVNPYFEAALAATGLAGHELM 504 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 + GSI +++ +P L+K+ TA +I+P+W + + Q+ D A S + L Sbjct: 505 DSVVA-KGSIQDMDFLPAKLRKVFVTAMDIEPVWHLRMQAAFQRHTDNAVSKTVNLSNTA 563 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + + + IY A+ G K R + +T +G K++ P G Sbjct: 564 TEQDIFDIYWLAYKEGCKGVTVYRDGCKSIQVLATGEG-QKKMDGEPAAPSGRVAVQTGR 622 Query: 941 PSSC 944 + Sbjct: 623 AQAA 626 >gi|58617310|ref|YP_196509.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia ruminantium str. Gardel] gi|58416922|emb|CAI28035.1| Ribonucleoside-diphosphate reductase alpha chain [Ehrlichia ruminantium str. Gardel] Length = 595 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 203/680 (29%), Positives = 297/680 (43%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + YERD G +L DRY L E Q F+R++ A A Y+ Sbjct: 6 VDYERDNNLTVFGKAVLSDRYLLEN-----EDYQQLFVRISEYYADNSE----HAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSKLWFMPATPILSNGGTNRGLPVSCFLNETEDSLKGIVDLWNENVWLASKGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 117 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ + D FMK V +A W L SP + Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSDHFMKCVENDAMWDLISPKDQ---------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A +W K+LT ETG P+I F D N P+ + + Sbjct: 220 -----------SVIFTVKARDIWIKILTARVETGEPYILFIDHVNRNKPEIYQKLNLDIK 268 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 SNLCTEITL + + L + + I +R LDNV I Sbjct: 269 MSNLCTEITLATGYDHLNKSRTAICCLSSLNLEYYEHWKDNELFIEDVMRFLDNVLTDFI 328 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + +E+AK S R+IG+G+MGF S L IP+ S A + I HA + Sbjct: 329 EKAPNEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIKKHADA 388 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +A E+G D V Sbjct: 389 ASYRIAIEKGPCP-------------------------------------DAKDAGVME- 410 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 R N ++IAPTA+I+ I G S I+P N++ ++G F V N FL L + Sbjct: 411 --RFVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLILKGE 468 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + D K + TA+E+D W+IE +S R K+I QAQS+N+ Sbjct: 469 NNDQVWSTISTNEGSVQHLDFLTDTEKLVFKTAYELDQRWIIEHSSDRSKYICQAQSVNI 528 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW GLK+ YY RS+S +K + ++ + Sbjct: 529 FLPANVHKRYLHKIHFLAWKKGLKSLYYSRSKSIQRADKVSRGALEKSIEQCKQITN--- 585 Query: 935 THSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 586 ----------FDYDECLSCQ 595 >gi|220905096|ref|YP_002480408.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869395|gb|ACL49730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 781 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 167/654 (25%), Positives = 289/654 (44%), Gaps = 91/654 (13%) Query: 301 LYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHFM 352 L RY +G IE P+ F RVA +A +E + A +FY+L++S+ F+ Sbjct: 21 LQKRYLRKNLDGKIIEAPRDLFWRVAAAIAAQEENYKNSSRTPNQLARDFYDLMTSWKFL 80 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G ++ +R + Sbjct: 81 PNSPTLMNAGTELGQLSACFVLPVGDSIEEIFDAVKYAAMIHKSGGGTGFSFSRLRPKDS 140 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + FL++ N + QGG R+GA L H D+ EF+ ++ G+ Sbjct: 141 RVGSTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIRAKEKEGE- 199 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ N + + + FM+ V + + L SP+ Sbjct: 200 ---FNNFNLSVGLTESFMQAVENDEQYDLVSPN--------------------------- 229 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +V +++ A ++ ++ +++G P I F D N +P G + S+N C E L Sbjct: 230 NGEVMKRLPARDVFDLLVRKAWQSGDPGIVFLDRINRDNPTPDQGEIESTNPCGEQPLLP 289 Query: 593 SSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTI 643 CNLGSINL D+D+L + +VR LDNVID + + Sbjct: 290 F----EACNLGSINLSCFHVPGHENSADPAAGIDWDELRRVVHLSVRFLDNVIDASRFPL 345 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ ++ +R IGLG+MGF L L +PY S + +++ + M F+ AS ELA Sbjct: 346 DRIGETVRKNRKIGLGVMGFADLLFQLGVPYDSQQGLDLGERIMAFVQGEGHRASAELAL 405 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSN 762 ERG + ++ S++ + K +G RN+ Sbjct: 406 ERGPFPAYGSSVFAR-----------------------------------KKLGPYRNAT 430 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821 IAPT T++ I G S ++P + + ++ + G+ +N L+ L+ ++ Sbjct: 431 VTTIAPTGTLSIIAGCSSGVEPLFALCFTRNILDGERLVEINPHFEAALESGGLFSHELM 490 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEP 880 + GSI +++ +P L+K TA +I P W + + Q+ D A S + L + Sbjct: 491 DAVVA-KGSIQDMDYLPAPLRKTFVTAMDIAPQWHLRMQAAFQRHTDNAVSKTVNLSNSA 549 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + + + IY A+ G K R + +T +G + S+ Sbjct: 550 TEQDIREIYWLAYQEGCKGVTVYRDGCKSIQVLATGEGQKKMDSGSAEVAGGSA 603 >gi|189485391|ref|YP_001956332.1| cobalamin-dependent ribonucleotide reductase alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287350|dbj|BAG13871.1| cobalamin-dependent ribonucleotide reductase alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 767 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 175/676 (25%), Positives = 287/676 (42%), Gaps = 82/676 (12%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA---- 339 L E E L +L RY +G+ IE P+ F RVA +A + ++ Sbjct: 9 LISENKVNLENNALTVLKKRYLKKDKDGNVIESPEDLFYRVAENIAQADKIYDEDTDITI 68 Query: 340 --VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 EFY +SS F+ ++PTL N+G QLS+CF+ + D + IF L+ A++ K Sbjct: 69 LIREFYLTMSSCDFLPNSPTLMNAGRHLQQLSACFVLPIDDSMDSIFETLKNTALIHKSG 128 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG G ++ +R + T+G S G I F++V N A+ QGG R+GA L H Sbjct: 129 GGTGFSFSRLRPKKDVVRTTSGISSGPISFMQVFNAATEAIKQGGTRRGANMGMLRIDHP 188 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ +F+ + DD +++ A I FM + + + L++P Sbjct: 189 DILDFIICK--DKDDSLNNFNISVA--ITKKFMDALEKGEYYNLYNPR------------ 232 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 + +++A ++ K++ ++ G P I F D N ++ G Sbjct: 233 ---------------NGVIIGRLNANEVFGKIVDQAWKNGEPGIVFVDRMNHKNTTPSAG 277 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + S+N C E L CNLGSINL NN +++KL T++TAV LDNVID Sbjct: 278 SIESTNPCGEQPLLPY----ESCNLGSINLGHFVKNNDVNWEKLEKTVKTAVHFLDNVID 333 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 ++ + I+K + ++R IGLG+MG+ L L IPY S +++ +A+E M FI + A Sbjct: 334 VSNYPIQKIGEVTRSNRKIGLGIMGWADLLLYLGIPYGSNDSLALAEELMGFIHSKSRKA 393 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ELA +RG++ +FK S++ +G R TIG Sbjct: 394 SEELAFKRGSFPNFKKSIYAKGSPV--------------------RNATTTTIAPTGTIG 433 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDL 815 M I S I+P + +Y + + + VN + K+ Sbjct: 434 M----------------IASASSGIEPIFALVYKRMQCLDNEEMYEVNPYFEKLAKENGF 477 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + +I + GSI + IP+ +KKI T+ +I P I+ + QK+ D A S + Sbjct: 478 YSPELIDKISE-KGSIRGFKEIPEKIKKIFVTSHDIAPEEHIKMQAAFQKFTDNAVSKTV 536 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + + + +Y ++ MG K R S + + + Sbjct: 537 NFPNSATKEDVKKVYILSYKMGCKGVTVYRDGSRNVQVLNLANKKEEYSQGALHEKKPRT 596 Query: 935 THSLGIPSSCTSDTEC 950 + T C Sbjct: 597 RPKKTTGLTFLMHTGC 612 >gi|154498792|ref|ZP_02037170.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC 29799] gi|150272182|gb|EDM99386.1| hypothetical protein BACCAP_02783 [Bacteroides capillosus ATCC 29799] Length = 784 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 183/672 (27%), Positives = 293/672 (43%), Gaps = 86/672 (12%) Query: 294 EYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNLL 346 +L RY + G E F RVA +A + + +A FYN++ Sbjct: 4 SENARAVLEKRYLIRDEKGEPTETVDDLFHRVANAIAAADAAFDPKADVAATASRFYNMM 63 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G ++ Sbjct: 64 TGLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAIKNAALIHKSGGGTGFSFSR 123 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G+ ++ T G + G I F+KV N AV QGG R+GA L H D+ +F+ + Sbjct: 124 LRPRGSTVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILDFITCK 183 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 +D + + N + I + FM+ V + L P Sbjct: 184 ----NDTKEITNFNISVGITEKFMQAVENGGSYELVDPAT-------------------- 219 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 KV ++A ++ K+++ ++TG P I F D N +P G + S+N C Sbjct: 220 -------HKVTGTLNAREVFEKIVSSAWQTGEPGIIFLDRLNRDNPCPQQGEIESTNPCG 272 Query: 587 EITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 E L CNLGSINL+ H D DKL +TIRTAV LDNVI++N + Sbjct: 273 EQPLLPY----EACNLGSINLVTHLKEEDGRWVLDKDKLTATIRTAVHFLDNVIEVNKYP 328 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + + R IGLG+MGF L + IPY S + V +A E ME ++ S LA Sbjct: 329 LPEIDAMTRSTRKIGLGVMGFADMLLYMGIPYNSDQGVAMAREVMELVNTIGHEESQALA 388 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 Q RGA+ F S + G +RN+ Sbjct: 389 QVRGAFPLFDESTYRNGKP------------------------------------IRNAT 412 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821 IAPT T++ I GVS ++P + Y+++ M N L N L R L+ E ++ Sbjct: 413 VTTIAPTGTLSIIAGVSSGVEPVFAYAYIRNVMDNTHLIETNQILKNVLLSRGLYSEELM 472 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 + GS+ +++ IP+D+K++ A ++ P+W ++ + Q + D A S + Sbjct: 473 RKIVE-QGSLAHVDGIPEDIKRVFVCAHDVSPIWHVKMQAAFQAYTDNAVSKTVNFPNSA 531 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + +++ +Y A+ +G K T R S + K DGK + D + Sbjct: 532 TKEEVAEVYTLAYKLGCKGTTIYRDGSRDEQVLNIGKVNDGK-DKAEKKDATGDPMVDAV 590 Query: 941 PSSCTSDTECEV 952 + C + Sbjct: 591 LEASCDGAACVM 602 >gi|254796776|ref|YP_003081612.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia risticii str. Illinois] gi|254589966|gb|ACT69328.1| ribonucleoside-diphosphate reductase, alpha subunit [Neorickettsia risticii str. Illinois] Length = 608 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 202/700 (28%), Positives = 305/700 (43%), Gaps = 115/700 (16%) Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 H D D + + RD G +L DRY + E Q F RVA + Sbjct: 9 HWKHHDHDEKKIRTL--HARDSFLTDFGKAVLKDRYLQNG-----EDYQGLFARVAQYYS 61 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 + + A Y+ +S+ FM +TP L N GT SCFL D L GI G E Sbjct: 62 ----DDPEHACRLYDYMSNLWFMPATPILSNGGTSRGLPVSCFLNETEDSLEGIVGLWNE 117 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 N LA + GG+G+ W +R +G + +GK+ G+IPF+ V N +A++QG R+G+ Sbjct: 118 NVWLASHGGGVGSYWGNLRSIGEKVK-CSGKTSGIIPFIVVQNALTLAISQGSLRRGSSA 176 Query: 450 AYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H ++ EF+DLRK TG D R+ +++ A I D FMK V ++ W L SP + Sbjct: 177 VYLPVNHPEIVEFIDLRKPTGGDPNRKALNLHHAVVINDDFMKAVLEDKEWDLISPKD-- 234 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 V + A +W ++LT ETG P+I F D Sbjct: 235 -------------------------GSVIATVGARGIWIRILTARLETGEPYILFIDTVQ 269 Query: 569 IRSPQQHVG---VVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHFANNQFDYDK 620 P + V SNLC+EITL + + TA+C L S+NL ++ Sbjct: 270 KLRPDVYKTLGLEVKMSNLCSEITLTTGKDHLDNHRTAICCLSSLNLEKFDE-----WEH 324 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYAS 676 IR + LDNV++ S R+IGLG+MGF S L IP+ S Sbjct: 325 DEQFIRDVMHFLDNVLEDFIRKAPDCMHRARYSAMRERSIGLGVMGFHSFLQSRSIPFES 384 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 A + + + I A S E+A ERG +D + Sbjct: 385 AIAKSVNLKIFKKIKHEADKISKEMALERGPC------------------------KDAV 420 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795 + R + MAIAPTA+I+ I G S I+P N++ + + Sbjct: 421 DCDMMER----------------FVHKMAIAPTASISIIAGNTSPGIEPYAANVFTQKTL 464 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 SG F V N L L+++ + + S + ++GS+ +++ + ++ K + TA+E+D W Sbjct: 465 SGSFIVKNKHLAALLERKGKNTDCVWSSIISNEGSVQHLDFLDENEKMVFRTAYEMDQRW 524 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 +IE A+ R +I Q+QS+NL+L K+L ++ W GLK+ YY RS+S K Sbjct: 525 IIELAADRTPYICQSQSVNLFLHSNIHKKELSNLHFLGWKKGLKSLYYCRSKSIQRTYKI 584 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + + PV +P +C CQ Sbjct: 585 SQEYKHKSDTPSPVGEP----------------DDCIACQ 608 >gi|34580443|ref|ZP_00141923.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia sibirica 246] gi|28261828|gb|EAA25332.1| ribonucleoside-diphosphate reductase alpha chain [Rickettsia sibirica 246] Length = 573 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 192/650 (29%), Positives = 288/650 (44%), Gaps = 90/650 (13%) Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 E Q F RV+ A ++ A + Y +S FM +TP L N GT SCFL Sbjct: 4 EDFQDLFARVSSYYAEN----KQHAQKLYEYMSKMWFMPATPILSNGGTDRGLPISCFLN 59 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 D L I EN LA GG+G+ W VR + I G S G+IPF+KV + Sbjct: 60 ETDDSLDDIVNLWTENVWLAARGGGIGSYWGNVRAINEGIRD-KGHSSGIIPFIKVMDSM 118 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV 493 +A++QG R+G+ YL H ++EEF+D+R+ TG D R+ +++ I D FMK V Sbjct: 119 TLAISQGSIRRGSSAVYLPINHPEIEEFIDIRRPTGGDVNRKALNIHHGIAITDEFMKAV 178 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 N + L SP KV K+ A LW K+LT Sbjct: 179 ENNTDFDLVSPAT---------------------------KKVVNKVRARDLWVKLLTTR 211 Query: 554 FETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 ETG P++ F D N P+ H V SNLC+EITL + + L + Sbjct: 212 IETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITLPTGIDHLGKSRTAVCCLSSL 271 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK----KSNHTHRAIGLGLMGFQSA 666 ++ I + + LDNV++ + S R++GLG+MGF S Sbjct: 272 NLEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARAKYSALRERSVGLGVMGFHSF 331 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L + +P S A + E+IS AS+E+ +E+GA D++ Sbjct: 332 LQMKKVPIESVMAKVWNKKIFEYISDETDKASIEIGKEKGACP--------------DAL 377 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785 + R SN AIAPTA+I+ I G S I+P Sbjct: 378 DAGSNER--------------------------FSNKTAIAPTASISVIAGNASPGIEPF 411 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 N +V+ ++G F V N L L+++ ++ + S + H+GS+ ++ + ++ K++ Sbjct: 412 AANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIATHEGSVQHLTFLSEEEKQVF 471 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 TA+EID WLIE AS R +I QAQSLN++L S K L+ I+ +AW G+K+ YY R Sbjct: 472 KTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNVSKKYLNNIHFKAWTKGVKSLYYCR 531 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 S S +K + + + + + + EC CQ Sbjct: 532 STSIQRADKVSHDVLKADFKDLEEQNDKLAEAG--------NHEECLACQ 573 >gi|18313863|ref|NP_560530.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2] gi|18161428|gb|AAL64712.1| ribonucleotide reductase [Pyrobaculum aerophilum str. IM2] Length = 849 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 193/872 (22%), Positives = 347/872 (39%), Gaps = 98/872 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ DG F+ +L + V A GL V ++ + +L + Sbjct: 3 TVIKLDGRREPFSHDKLRLSVIRA--GLDVC--VEVNGAVEVSVNRDVGTWELADMVQLE 58 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +P A V LL ++ +E + K + F IE G+ Sbjct: 59 LLRRAIDKPELALVAKAHLLGRIYKETFGKDFLKTKTGYRERAIAR----FKSLIEAGLL 114 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHINGSRI-EMPQAFFMR 323 E++ F+ + + D + Y L++ + Y L R+ E P R Sbjct: 115 KPEAIEALSAFE-------PRPDFDRSLSYNALRLFTNGNYALRDQNFRLAETPSMAAWR 167 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 VA +A + +RA +Y+ ++ + ++P FN+ TR +SCF V D L I Sbjct: 168 VATAVARE----LERAKLYYDYITQLKIVPASPFWFNAWTRKEMFASCFTLEVEDCLSSI 223 Query: 384 --------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + AL + ++ + GG+G D++ +R G + G+ G + G + F+++ + Sbjct: 224 THPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPVSFMRLFDANV 283 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR--- 492 + QGGKR+GA L WH D+ +F+ + D + N + ++ D FM++ Sbjct: 284 DVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDA-HLQNFNISVFVDDTFMEKALG 342 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ + L +P D EF + ++ + V+ ++ A L+ ++ Sbjct: 343 VDGDSKYKLINPRVFYDKTGKKAVEF----VDVHKETQVPKEAVWGEVDARQLFGEIAHG 398 Query: 553 LFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 +++G P + FK N +P + + S N C E N VCNL Sbjct: 399 AWDSGDPGLIFKSNLNASNPLLGEEIEISNYRFTYIWRSVNPCAETVQNPF----EVCNL 454 Query: 603 GSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 INL+ N D++ LA R R LD+ I+ + I+ + N Sbjct: 455 THINLVKFVKENCAGGSFEEKLGCIDWEGLAQAARVGTRYLDDAIERSRTGIKIIDEMNS 514 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R GLG+MGF L L IPYAS EAVE+ + M +I +A+ S ELA+ERG + F Sbjct: 515 ATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDESAELARERGPFKFF 574 Query: 712 KGSLWDQGVFPI----DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI----------- 756 + S++ +G P+ D + E + R + D L+ Sbjct: 575 EKSVYARGEIPVLKFQDFVWRRWERIKRVY-PRELQEAGDRLRDITMRTREWLRPYLERL 633 Query: 757 ------GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G+RNS ++IAPT + + G + ++P + ++++ G + L Sbjct: 634 ADKVRGGVRNSVVLSIAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLIEYYEPGIEWL 693 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K R W + + G + + +P+ K + ATA EI +W + + Q+W+DQ Sbjct: 694 KARGYWTPQVR-KVVEETGMLRDAP-VPEAAKHLLATAMEIGWLWHVLMQASAQQWVDQG 751 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTLKGVD 920 S + + + + + + AW +G+K R +S + K L Sbjct: 752 ISKTINMPANAPQEDVYWAFAFAWAVGVKGITVYRDKSKSVQVIYTGLKQDIKKRLAETK 811 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950 + + + + D C Sbjct: 812 IVVRPLALETSIEEVAEQAKLKALEEGKDPYC 843 >gi|117530177|ref|YP_851020.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis phage Ma-LMM01] gi|86990303|dbj|BAE79255.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis phage Ma-LMM01] gi|117165789|dbj|BAF36097.1| ribonucleoside-diphosphate reductase alpha subunit [Microcystis phage Ma-LMM01] gi|124270943|dbj|BAF45773.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage Ma-LMM02] gi|124270945|dbj|BAF45774.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage Ma-LMM03] gi|124270947|dbj|BAF45775.1| ribonucleoside-diphosphate reductase alpha subunit [Cyanophage Ma-HPM05] Length = 742 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 220/787 (27%), Positives = 359/787 (45%), Gaps = 86/787 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 ++ ++ DG+ +++ R ++ AC GL +V + + ++ +++ LI Sbjct: 2 QINVIHTDGSRTPYDANRAIEVINWACEGL-EVDPDKLSRRLSRRFNADITTEEIQNGLI 60 Query: 204 FSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ L + + P++ KV+ R + RR+V KA + YP F E Sbjct: 61 RTAAELADLQYPDWLKVSGRLRMWDWRRKV---------KARRGYLYGNYPVAFEYLRSE 111 Query: 263 GVKARLLHES----MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 G+ L + D+ + ERD F+ G +L RY L E+ Q Sbjct: 112 GLYEGDLIKKFLDTYSADDIAEAGTWIDPERDMRFDISGADLLTARYLLEG-----ELLQ 166 Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 ++ A+ L++ E E+ A + Y+LLS +TP + N LSSC + + Sbjct: 167 EMWLTQALLLSMLEPAHERMTFAHKAYDLLSLGKISLATPLMSNLRQADGSLSSCHIIDI 226 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D IF + + A ++ GG+G + VR G+ I G S GV P++K+ N T V Sbjct: 227 DDSRESIFDNISQLAAMSANGGGVGVRISKVRARGSRIRKKKGASGGVCPWIKIINATIV 286 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 A NQ G R GA ++ WH D+ E++DLR + G + + D+ I D FM+RV + Sbjct: 287 ATNQRGVRAGACTVGIDVWHADLLEYMDLRGDAGSEHTKARDILLQFIISDEFMRRVILD 346 Query: 497 AGWTLFSPDEVSDLH-----DLYGKEFEIAYENYERQAD--RGEIKVFRKISAVALWRKM 549 W L P E+ ++ D+YG EF AY E + + V +K+SA A+W+KM Sbjct: 347 KDWYLVCPTEIKNVFGYQLADMYGDEFTNAYHVIEAYINSSAPPLDVVKKVSAKAIWKKM 406 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 L +L ETG P++ FKD N +P +H G++ NLC E +S + C L S+ L Sbjct: 407 LMLLLETGTPYVAFKDRINALNPNKHEGIIGGVNLCVESYSLFNSSYSHCCMLLSLVLPR 466 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D RTAVR+LD D+ +A+ + +R IG+G+MG L + Sbjct: 467 IADDEMAD------VSRTAVRLLDAACDLTTSPTPEARAHVNRYRTIGVGVMGLADWLAI 520 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 H+ Y + + ++ E I F+ ASVELA+ERGAY +F GS W +G+ L Sbjct: 521 RHLRYQD---LNLIEKLFEDICFYTTQASVELAEERGAYPAFPGSEWSKGLI------LG 571 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 ++ + N T W L +R+ G+RNS+ +A AP ++ + + G + S P + L Sbjct: 572 GRDKEWVRDNSTDPERWYALMERIIVSGIRNSHILATAPNSSTSLVQGATASFLPVFSRL 631 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + N +G T+V ++ + + Sbjct: 632 TIDKNGAGINTIVPLYIKEAFH--------------------------------FYQESR 659 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL--YLDE--------PSGKKLDFIYRQAWLMGLKT 899 P ++ +A+ QKW+D S L +E + K L+ +Y QAW GLKT Sbjct: 660 YTHPSVVVSAAATIQKWVDTGLSTELLFNFNEHAYGFDYVATAKDLNDVYMQAWREGLKT 719 Query: 900 TYYLRSR 906 YY+RS Sbjct: 720 VYYVRSM 726 >gi|313672578|ref|YP_004050689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Calditerrivibrio nitroreducens DSM 19672] gi|312939334|gb|ADR18526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Calditerrivibrio nitroreducens DSM 19672] Length = 762 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 165/659 (25%), Positives = 284/659 (43%), Gaps = 82/659 (12%) Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFYN 344 + +L RY G +E P+ F RVA+ +A + K A +FY+ Sbjct: 13 ELSNNAITVLKKRYLKRDSEGKLLETPKEMFQRVAINIAQADLNYNKDADIAETARKFYD 72 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 ++ F+ ++PTL N+G QLS+CF+ V D L IF A++ A++ K GG G + Sbjct: 73 IMVDLKFLPNSPTLMNAGKELQQLSACFVLPVEDSLDKIFEAVKYTALIHKSGGGTGFSF 132 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R + T G S G I F+ V + + QGG R+GA L H D+ +F+ Sbjct: 133 SRLRPKDDVVKTTKGVSSGPISFISVFDAATEVIKQGGTRRGANMGILRVDHPDIMDFIY 192 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D+ + + N + + + FMK V + + L +P + Sbjct: 193 AKK----DKTKLTNFNLSVGLTEEFMKAVEEGKDFELINPRD------------------ 230 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 KV K++A ++ +M+ + +E G P I F D N +P G + S+N Sbjct: 231 ---------KKVVGKLNARKVFDEMVQLAWEGGDPGIIFLDRINKANPTPKEGEIESTNP 281 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C E L CNLGSINL + + D+++L I T+V LDNVID+N + I Sbjct: 282 CGEQPLLPY----ESCNLGSINLAKFIKDKKIDWEELKYVIHTSVHFLDNVIDMNKYPIP 337 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + + +R IGLGLMG+ AL LL IPY S E +E+A++ M+F + + AS +LA+ Sbjct: 338 EIEYMTKKNRKIGLGLMGWADALALLEIPYNSYEGIELAEKVMKFFNDESKIASSKLAEV 397 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RG++ +F+ S++ + + Sbjct: 398 RGSFPNFEDSIYP--------------EMGFKYLRNATTTTIAPTGTI------------ 431 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISD 823 + I S ++P + + ++ M VN + +K+ ++ E ++ Sbjct: 432 --------SIIGNASSGVEPYFAIAFYRNVMDNTKLVEVNPYFKQAVKEYGIYSEELMEK 483 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + G + +I +P+ LKKI TA EI P+W ++ + QK+ D A S + + + Sbjct: 484 IAE-KGILKDIPEVPEKLKKIFVTAHEISPIWHVKMQAAFQKYTDNAVSKTVNFSHDATV 542 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSV---EKSTLKGVDGKLNAVPVTDPNSSTHSL 938 + + +Y A+ +G K R + + ++N Sbjct: 543 EDVKNVYLLAYKLGCKGITIYRDGCREDQVINIGTKTEKEKEQMNVEYKATFTPRPRPK 601 >gi|307266246|ref|ZP_07547787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter wiegelii Rt8.B1] gi|306918696|gb|EFN48929.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter wiegelii Rt8.B1] Length = 770 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 179/667 (26%), Positives = 283/667 (42%), Gaps = 85/667 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343 ++L RY NG IE + F RVA +A + E FY Sbjct: 1 MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ + F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G Sbjct: 61 DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D + N + I + FMK V ++ + L P Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL DYDKL T+ AV LDNVID N Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDAN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + ++ R IGLG+MGF + L L IPY S EAVE+ +E MEFI + AS+ Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA++RG + + S++ + I + Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 + I G S I+P + ++ M + VN +R + E Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ ++ GS+ +I+ IP+D+K++ A +IDP W ++ + QK +D A S + Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 +E + + + Y A+ +G K R S + V +K + + N Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRESQVLNLGIKEKKVETKPIEEQTKNEPLR 589 Query: 937 SLGIPSS 943 P Sbjct: 590 PRPRPPV 596 >gi|294496479|ref|YP_003542972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanohalophilus mahii DSM 5219] gi|292667478|gb|ADE37327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanohalophilus mahii DSM 5219] Length = 596 Score = 393 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 168/637 (26%), Positives = 280/637 (43%), Gaps = 77/637 (12%) Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE----FYNLLS 347 G +L RY L G E P F RVA +A ++ + FY +++ Sbjct: 16 LSANGKTLLEKRYLLRDAEGKVAEEPGELFARVAKTIARVDSRYGYDVEKTEDDFYQVMA 75 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F+ ++PTL N+GT QLS+CF+ V D L IF +LQ+ +++ + GG G ++ + Sbjct: 76 DLEFLPNSPTLMNAGTELGQLSACFVLPVEDSLKSIFKSLQDMSLIHQSGGGTGFSFSNL 135 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R G + TNG + G + F+ + + + QGG+R+GA L H D+ EF+ + Sbjct: 136 RPKGDIVGSTNGVASGPLSFMTIFDKATDVIKQGGRRRGANMGVLRVDHPDIIEFIRAK- 194 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 +D + N + + D FM+ V+Q+ + L +P Sbjct: 195 ---EDEELLRNFNLSVGVTDEFMEAVSQDRDYALINPRT--------------------- 230 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 K+ +++ A ++ +++T TG P + F D N R P +G + S+N C E Sbjct: 231 ------GKIEKRLKAKDVFDRIVTCACRTGDPGLLFLDEINRRHPLSTIGTIESTNPCGE 284 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + L CNLGSINL D++KL T+ T V LDNVID N + + + Sbjct: 285 VPLLPY----ESCNLGSINLAQMVKEGAIDWEKLKQTVHTGVHFLDNVIDANKYPLPQIG 340 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + +R IGLG+MGF + L L IPY E + A++ M+F ++ SVEL ++RG+ Sbjct: 341 QRTKQNRKIGLGVMGFAAMLARLGIPYDCREGIATAEKVMKFTQDESVQKSVELGEQRGS 400 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + +F S A RD A MRN+ +A Sbjct: 401 FPNFHRS---------------ALARDYPA--------------------MRNATVNTVA 425 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +++ I + I+P + Y ++ M T ++ ++ + ++ ++ Sbjct: 426 PTGSLSIIANTTSGIEPMFALTYRRNVMGTRLTEIDPVFEEIARKHGFYSSQLMEEIAGT 485 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 GS+ IP+ ++I ATA EI P W + + QK +D A + + L E + + Sbjct: 486 -GSLQTSPNIPEQTRRIFATALEIQPRWHVRMQAAFQKHVDNAVAKTVNLPHEATVEDFR 544 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 +Y A+ + K R S D K Sbjct: 545 EVYMLAYRLKCKGIAAYRYGSKAEQVLEIGNAGDKKA 581 >gi|300870142|ref|YP_003785013.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira pilosicoli 95/1000] gi|300687841|gb|ADK30512.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira pilosicoli 95/1000] Length = 771 Score = 393 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 206/811 (25%), Positives = 357/811 (44%), Gaps = 97/811 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I+ DG FN ++L+ ++ A G + + +L + D + L LI ++ Sbjct: 12 IIKRDGREEPFNEEKLKKVINWATDGKEGFT-NALLEGLNIKINDRMKIEVLYDELINTA 70 Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 I P+Y + + L K+ +E K + + ++ V Sbjct: 71 VNKISPLYPSYDTIAEKLYLMKIYKETC--------KLKKTGSYPHIKTFLKKGVKHKVY 122 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 + + D +L + + + +RD F Y GL I Y +Y +I ++E+PQ +M A Sbjct: 123 DKNIVSLFSDKELDKINSMIVPDRDLLFTYKGLAIFYRKYCKNIGSKKLELPQITYMVAA 182 Query: 326 MGLALKETE--------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 M + + K Y++LS +TP + NS + PQL+SC Sbjct: 183 MFSFYDDFYKGANKDIVEKTKTDRLKYIKRTYDMLSKHEVTFATPRIANSMSIRPQLASC 242 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T DD + + A+ +K+SGG+ D + +R G+ I G+S G +PF+K Sbjct: 243 ILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQSNRGRSDGPVPFIKRT 302 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 T + NQGG RKGA WH+DV + + L+ G + R + + I ++ + Sbjct: 303 EQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNILRE 362 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV ++ TLF P E L++ +G+ F +AY YE ++ + ++I A L ++L Sbjct: 363 RVNKDEYITLFDPKETPLLNEEFGENFNVAYIYYESKSSIRK----KRIKAKDLLFQILK 418 Query: 552 MLFETGHPWITFKDPCNIRSP----------------------QQHVGVVHSSNLCTEIT 589 + ETG+ ++TF D N ++ V + + EI Sbjct: 419 VRQETGNLYLTFVDNINEQNMVNKFVGASNLCQEIVIPSFPSKLIEEKYVVNEDGSYEIV 478 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 S E +CNL S+NL + F +K S T +R DN+ID + +++ + + Sbjct: 479 QRKKSGEIGICNLVSVNL---MSWVNFSEEKKKSFCYTLLRGCDNIIDSQFYPVKEGEIA 535 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N +R IG+G++ + + L + Y EA+E ++ E + +H AS LA+ERG Y Sbjct: 536 NKKNRPIGIGVINYANLLASNKLKYTDKEALEFTNKIFEDLYYHIYEASNILAKERGPYK 595 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 +F S W +G P+ L + ++ W++L + +K G+R S AIAPT Sbjct: 596 TFNESKWREGKTPVHISLLNKSSNLKFDID---MDKWNKLAENIKNYGVRFSFHGAIAPT 652 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 AT ++SI+P +V+ Sbjct: 653 ATSGKSVSATESIEPIVDLFFVEEG----------------------------------- 677 Query: 830 SIGNIERIPDDLK---KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKL 885 I + + +LK + + ++I +IE A+ RQ++IDQ+QSLNLY +P S K+L Sbjct: 678 -IQTLPSLAPNLKKNREYYERCWDIPAKTIIELAAIRQRYIDQSQSLNLYYVKPDSAKEL 736 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + A +GLKT YY+++ ++ E + Sbjct: 737 WDDIQYAMDLGLKTLYYMKT-PKSNFELEEV 766 Score = 38.3 bits (87), Expect = 7.1, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 10/73 (13%) Query: 31 VIKRNGGVTSFDPSKISRAI----------MKAFMAVEGKGASRSIRVQDIIKNLTEQTV 80 +IKR+G F+ K+ + I A + + ++++ + L V Sbjct: 12 IIKRDGREEPFNEEKLKKVINWATDGKEGFTNALLEGLNIKINDRMKIEVLYDELINTAV 71 Query: 81 TRLLQHNKSALIV 93 ++ S + Sbjct: 72 NKISPLYPSYDTI 84 >gi|300088374|ref|YP_003758896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528107|gb|ADJ26575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 902 Score = 393 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 181/665 (27%), Positives = 286/665 (43%), Gaps = 84/665 (12%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFYNL 345 F L +L RY G IE P+ RVA +A E + + EFY L Sbjct: 155 FSDNALAVLNKRYLKKDKQGQAIEAPEDMLRRVARTVAAAELIYDPKCNVRNVENEFYGL 214 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++ F+ ++PTL N+G QLS+CF+ + D + IF A++ AM+ K GG G ++ Sbjct: 215 MARLEFLPNSPTLMNAGRELGQLSACFVLPIDDSIESIFDAVKHTAMIHKSGGGTGFSFS 274 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G + G + F++ + + QGG R+GA A L H D+E F+ Sbjct: 275 RLRPESDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIEHFITA 334 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ G + N + I D FM+ + + L +P Sbjct: 335 KQQAG----VLTNFNLSVAITDKFMEAARADEEYELINPQ-------------------- 370 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 GE+ R+ A A++ +++ + ++TG P I F D N +P +G + S+N C Sbjct: 371 -----NGEVAGRRR--ARAIFDQIVQLAWKTGDPGIVFIDRINAENPTPKLGRIESTNPC 423 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFA---NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 E L CNLGS+NL Q DYDKL T+RTAVR LD+VID+N Sbjct: 424 GEQPLLPY----ESCNLGSVNLSKMVKGNGKKQVDYDKLRYTVRTAVRFLDDVIDVNKFP 479 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +E+ + R IGLG+MGF L L +PY SPEA+ + +E M FI + AS LA Sbjct: 480 LEQIAEQTRRTRKIGLGVMGFADMLIALGVPYNSPEALRVGEEVMGFIQAESHRASSALA 539 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG + +++GS +D V MRN++ Sbjct: 540 DERGVFPAYEGSKYDGQVK------------------------------------MRNAS 563 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821 C IAPT T++ I G S I+P + + ++ M G VN + + + E ++ Sbjct: 564 CTTIAPTGTLSIIAGCSSGIEPHFALCFTRNIMDGTRMIEVNPYFAEAARSGGFYSEELM 623 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 L + +++ +P+++KK+ TA I P ++ + QK+ D A S + + Sbjct: 624 KKLAE-GAHLEDMKEVPEEVKKLFVTAHSITPEGHVKMQAAFQKYTDNAVSKTVNFPADA 682 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + ++ +Y A+ LK R ST K K Sbjct: 683 TVAHVEEVYLMAYDEKLKGITIYRDGCKADQPMSTGKAEPAKAETPVPAPAPKPAGPRKR 742 Query: 941 PSSCT 945 Sbjct: 743 SKVTN 747 >gi|124516151|gb|EAY57659.1| ribonucleotide reductase [Leptospirillum rubarum] Length = 732 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 167/646 (25%), Positives = 279/646 (43%), Gaps = 86/646 (13%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE---KEKRAVEFYNLL 346 L++L RY G E P+ F R+A +A ++ +E A E+Y + Sbjct: 7 LNLSDNALKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFM 66 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 +S F+ ++PT+ N+G QLS+CF+ V D + IF ++ A++ + GG G ++ Sbjct: 67 ASLDFLPNSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSR 126 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA + T G++ G + F+KV N + A+ QGG R+GA L H D+ EF+D + Sbjct: 127 LRPKGAVVRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCK 186 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 D + + N + I D+FM+ V ++ + L +P Sbjct: 187 M----DLTQVTNFNISVAITDVFMQAVKEDGEYDLIAPH--------------------- 221 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +V ++ A ++ K+ + G P + F D N +P ++N C Sbjct: 222 ------NGEVVGRLRAREVFDKIAHNAWANGEPGLFFIDTANRANPTPSRWTYEATNPCG 275 Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCH 641 E L CNLGSINL H + D+++L ++ AVR LDNV+D N Sbjct: 276 EQVLGPY----ESCNLGSINLERHVRSSATGKPEVDWERLGRSVYLAVRFLDNVVDANRF 331 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 I + N R IGLG+MGF L L IPY S E +E+A++ M FI A S +L Sbjct: 332 PIPELAAVNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDL 391 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ G + ++G + + RNS Sbjct: 392 AKVHGPFPYYEG----------------------IGTRK------------------RNS 411 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 + + IAPT TI+ I S +P + ++ K+ M G ++ W + + Sbjct: 412 HLLTIAPTGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEIVARREGFWSDGL 471 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + GS + +P+ +K+ ATA +I P W + + QK+ID A S + L E Sbjct: 472 AEKIVQNHGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQE 531 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 + + ++ Y ++ +G K R S + + K + Sbjct: 532 ATVEDVEDAYLLSFELGCKGITVYRDGSRHNQVLNLGTNAKEKKES 577 >gi|238695378|ref|YP_002922571.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage JS10] gi|220029514|gb|ACL78448.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage JS10] Length = 751 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 185/782 (23%), Positives = 316/782 (40%), Gaps = 64/782 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G F+++++ ++ C G + + E ++ DG++ D++ + Sbjct: 1 MQVQKSSGVSQDFDAQKIIKVLTWGCEG-TQIDPYELYEEIKTHLRDGMTTKDIQNLTVK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + LI +EP+Y V A+ L+ LR+EV + + ++ + EG Sbjct: 60 VAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPR-----------SFIDHISYCVNEG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERDF Y G L ++Y G E PQ Sbjct: 109 KYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E + + FY+ +S+ TP + + T Q SSC + D L Sbjct: 169 MCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R G+ I K GVIPF K + +Q Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G D R M+ + DL M+R +N T Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKNDYIT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ E + + A++ ++I A L+ +T T + Sbjct: 349 LFSPHEMGGELYYSYFEDQERFRELYEAAEKDPSIRKKRIKARDLFELFMTERSGTARIY 408 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 409 PQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNFDWQD 468 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A K R +G+G+ + + L Y Sbjct: 469 QDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASYE-- 525 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 526 DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKIDQIA 582 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 W L++ + G+RNS A+ P + + + + I+P + +K + G Sbjct: 583 APNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKESKEG 641 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F V + + L+D + S+ P + T Sbjct: 642 NFRQVVPNVE---HNQGLYD---------YAWSLAKKGNKP------YLT---------- 673 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY--LRSRSA 908 + KW+ Q+ S N Y D + +K + W G K YY R S Sbjct: 674 -QVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTRDGSG 732 Query: 909 TS 910 T Sbjct: 733 TD 734 >gi|225631267|ref|ZP_03787950.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591041|gb|EEH12240.1| ribonucleotide-diphosphate reductase alpha [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 584 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 191/672 (28%), Positives = 297/672 (44%), Gaps = 101/672 (15%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 F G +L DRY + E Q F R+A + + A Y+ +S+ FM Sbjct: 4 FTDFGKAVLSDRYLIEN-----ESYQDLFARIANYYSDNKE----HAQRLYDYMSNLWFM 54 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 STP L N GT+ SCFL D L GI EN LA GG+G+ W +R +G Sbjct: 55 PSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIGE 114 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-D 471 + G +GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLDLRK TG D Sbjct: 115 SVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLDLRKPTGGD 173 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R+ +++ A + D FM+ V + W L SP Sbjct: 174 PNRKALNIHHAVIVTDKFMQAVENDQEWNLISPHNN------------------------ 209 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEI 588 KV + A +W K+LT ETG P+I F D N P+ + + SNLC+EI Sbjct: 210 ---KVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIKMSNLCSEI 266 Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 TL + + L + +++ I +R LDNV++ + + Sbjct: 267 TLTTGYDHLNKSRTAVCCLSSVNLEYYEEWEDNKLFIEDIMRFLDNVLEDFINKAPNEMQ 326 Query: 649 SNHT----HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 R+IGLG+MGF S L +P+ S A + + +++ A S +LA+E Sbjct: 327 RAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSKKLAEE 386 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +GA D ++ R ++ + Sbjct: 387 KGACP------------------------DAKEVDLMER----------------FTHKL 406 Query: 765 AIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 AIAPTA+I+ I G S I+P N++++ ++G F V N FL L +++ ++ + S Sbjct: 407 AIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDNDKIWSS 466 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + ++GS+ +++ + + K TA+E+D W+IE AS R +I Q+QS+NL+L Sbjct: 467 ISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASNRTSYICQSQSVNLFLPANVHK 526 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + L I+ AW GLK+ YY RS+S +K + TD Sbjct: 527 RYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTD------------ 574 Query: 943 SCTSDTECEVCQ 954 EC CQ Sbjct: 575 --IDYDECLSCQ 584 >gi|206602949|gb|EDZ39429.1| Ribonucleotide reductase [Leptospirillum sp. Group II '5-way CG'] Length = 732 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 170/646 (26%), Positives = 281/646 (43%), Gaps = 86/646 (13%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE---KEKRAVEFYNLL 346 + L++L RY G E P+ F R+A +A ++ +E A E+Y + Sbjct: 7 LSLSDNALKVLEKRYLGKDEAGIVRENPEQMFRRIADAIASSNSQSSEREFLAEEYYRFM 66 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 +S F+ ++PT+ N+G QLS+CF+ V D + IF ++ A++ + GG G ++ Sbjct: 67 ASLDFLPNSPTIMNAGRPLGQLSACFVLPVGDSMPEIFDTVKATALIHQTGGGTGFSFSR 126 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA + T G++ G + F+KV N + A+ QGG R+GA L H D+ EF+D + Sbjct: 127 LRPKGAVVRSTGGQASGPVSFMKVINASTDAIKQGGTRRGANMGILRVDHPDILEFIDCK 186 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 D + + N + I D+FMK V ++ + L +P Sbjct: 187 M----DLTQVTNFNISVAITDVFMKAVKEDGEYDLIAPH--------------------- 221 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +V K+ A ++ K+ + G P + F D N +P ++N C Sbjct: 222 ------NGEVVGKLRAREVFDKIAHNAWANGEPGLFFIDTANRANPTPSRWTYEATNPCG 275 Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCH 641 E L CNLGSINL H N + D+++L ++ AVR LDNV+D N Sbjct: 276 EQVLGPY----ESCNLGSINLERHVRSSATGNPEVDWERLGRSVYLAVRFLDNVVDANRF 331 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 I + N R IGLG+MGF L L IPY S E +E+A++ M FI A S +L Sbjct: 332 PIPELAAVNQGTRRIGLGIMGFARLLMRLEIPYDSEEGLEMAEKVMSFIRDEAERTSQDL 391 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ G + ++ + +R RNS Sbjct: 392 AKVHGPFPYYE--------------------------DIGTRK--------------RNS 411 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 + + IAPT TI+ I S +P + ++ K+ M G ++ W + + Sbjct: 412 HLLTIAPTGTISMIADTSSGCEPEFSIIWYKNVMDGTHLPYTLEMFEVVARREGFWSDGL 471 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + GS + +P+ +K+ ATA +I P W + + QK+ID A S + L E Sbjct: 472 AEKIVQNHGSCRGLSEVPEKWQKVFATAHDIAPRWHVRMQAAFQKYIDAAVSKTINLPQE 531 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 + + ++ Y ++ +G K R S + + K + Sbjct: 532 ATVEDVEDAYLLSFELGCKGITVYRDGSRHNQVLNLGTNAKEKKES 577 >gi|256751879|ref|ZP_05492751.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus CCSD1] gi|256749286|gb|EEU62318.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus CCSD1] Length = 770 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 175/633 (27%), Positives = 276/633 (43%), Gaps = 84/633 (13%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFY 343 ++L RY NG IE + F RVA +A + ++ FY Sbjct: 1 MKITENARKVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G Sbjct: 61 DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D + N + I + FMK V ++ + L P Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL DYDKL T+ AV LDNVID N Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + ++ R IGLG+MGF + L L IPY S EAV++ +E MEFI + AS+ Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA++RG + + S++ + I + Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 + I G S I+P + ++ M + VN +R + E Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ ++ GS+ +I+ IP+D+K+I A +IDP W ++ + QK +D A S + Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +E + + + Y A+ +G K R S S Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRES 562 >gi|116747708|ref|YP_844395.1| ribonucleotide-diphosphate reductase subunit alpha [Syntrophobacter fumaroxidans MPOB] gi|116696772|gb|ABK15960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Syntrophobacter fumaroxidans MPOB] Length = 728 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 181/669 (27%), Positives = 287/669 (42%), Gaps = 80/669 (11%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE------TEKEK 337 +K E L +L RY G IE P+ F RVA +A + + E+ Sbjct: 4 VKKEHPLRMTPNALVVLRKRYLEKDDEGKPIETPEELFWRVARTIAQADVAFQGPEKAEE 63 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A FY L++S F+ ++PTL N+G QLS+CF+ V D + IF A++ AM+ K Sbjct: 64 TADRFYALMTSLDFIPNSPTLMNAGRPLGQLSACFVLPVEDSIDSIFEAIKHAAMIHKSG 123 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG G ++ +R + T G + G + F+ V + + QGG R+GA L H Sbjct: 124 GGTGFSFSRIRPENDKVLSTQGVASGPVSFMSVFDTATETIKQGGTRRGANMGILRVDHP 183 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+E+F+ + D R + N + + D FMK V ++A + L SP Sbjct: 184 DIEKFITCKT----DNDRMTNFNISIAVTDSFMKAVEEDAEYELISPRTRER-------- 231 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 + +SA ++ ++ + G P I F D N +P HVG Sbjct: 232 -------------------VQSLSARKVFDEITQSAWRNGEPGIIFLDVMNRHNPTPHVG 272 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + S+N C E L CNLGSINL + + DY+ L + AV LDNVI+ Sbjct: 273 EIESTNPCGEQPLLPY----ESCNLGSINLASMHRDGNIDYEHLKEVVWDAVHFLDNVIE 328 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N + ++ + +R IGLG+MGF L L +PY S AVE A++ M FI + +A Sbjct: 329 VNNYPLQIIEDMTRGNRKIGLGVMGFSDLLISLGVPYNSEAAVETAEKVMSFIQQESKAA 388 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S +ERG + ++ GS++++ P Sbjct: 389 SAHYGKERGNFVNYAGSIYERPETPH---------------------------------- 414 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLW 816 MRN+ IAPT TI+ I G S I+P + +V+ + G + V+ ++R + Sbjct: 415 MRNATTTTIAPTGTISIIAGCSSGIEPLFAISFVRKVLDGQELVEVHPLFQKVARERGFY 474 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + ++ + GSI N IP D++ + T+ ++ P W I + QK D A S + Sbjct: 475 SDDLMKKIAE-KGSIKNFLEIPADVRNVFVTSHDVTPDWHIRIQAAFQKHTDNAVSKTIN 533 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSS 934 + + + Y QA+ +G K R S V K ++ P D + Sbjct: 534 FPFSATPEDVSSAYLQAYKLGCKGLTIYRDGSRDVQVLNIQRKPQYPQVEPRPRPDRTTG 593 Query: 935 THSLGIPSS 943 Sbjct: 594 ITERVNTGC 602 >gi|73667183|ref|YP_303199.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia canis str. Jake] gi|72394324|gb|AAZ68601.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake] Length = 622 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 199/680 (29%), Positives = 296/680 (43%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y RD G +L DRY L E Q F+R++ + A Y+ Sbjct: 33 VDYGRDNNLTSFGKAVLSDRYLLEN-----EDYQQLFVRISEYYSDNPE----HAQRLYD 83 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 84 YMSQLWFMPATPILSNGGTNRGLPISCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYW 143 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 144 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 202 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ + D FMK V + W L SP + Sbjct: 203 LRKPTGGDPNRKALNIHHGVVLSDKFMKCVENDEPWDLISPKDQ---------------- 246 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A +W K+LT ETG P+I F D P+ + + Sbjct: 247 -----------SVIFTVKARDIWIKILTTRVETGEPYILFIDQVEQNKPEIYKKLNLNIK 295 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 SNLCTEITL + + L + + + I +R LDNV I Sbjct: 296 MSNLCTEITLTTGYDHLNKSRTAICCLASLNLEYYEKWKDNSLFIEDVMRFLDNVLTDFI 355 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + +E+AK S R+IG+G+MGF S L IP+ S A + I HA + Sbjct: 356 EKAPNDMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIKRHADA 415 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +A E+G+ D+ R Sbjct: 416 ASYNIAMEKGSCP--------------DAQDAGVIER----------------------- 438 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 N ++IAPTA+I+ I G S I+P N++ ++G F V N FL L + Sbjct: 439 ---FVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLIVKGK 495 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +E + S + ++GS+ +++ + ++ K I TA+E+D W+IE S R K+I QAQS+N+ Sbjct: 496 DNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNI 555 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW GLK+ YY RS+S +K + ++ + Sbjct: 556 FLPANVHKRYLHKIHFLAWKKGLKSLYYCRSKSIQRADKVSHGALEKSVEQYKQITN--- 612 Query: 935 THSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 613 ----------FDYNECLSCQ 622 >gi|57234550|ref|YP_181365.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] gi|57224998|gb|AAW40055.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] Length = 599 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 171/650 (26%), Positives = 291/650 (44%), Gaps = 83/650 (12%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEF 342 D ++L RY NG IE P+ F RVA +A E + EF Sbjct: 13 DVRLSTTAKRVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEF 72 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y +S F+ ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G Sbjct: 73 YQAMSRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGF 132 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 ++ +R G + + G + + + + A V QGG R+G A L+ H D+ +F Sbjct: 133 SFSNLRPAGDKVGELTEVAGGPVSVINIFSAAADYVRQGGVRRGCNAAILDVTHPDILKF 192 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 + + D + + + FM +V + + +P Sbjct: 193 ISCKG----DPNALTNFYISVVVTREFMTKVRSGEDYDIINPHT---------------- 232 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 +V ++++A ++ ++ ++TG P + F D N +P +G + Sbjct: 233 -----------GEVVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHV 281 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDI 638 + C E TL CNLGSI+L + DY+KL T++ A+R LDNVID+ Sbjct: 282 SGCGEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDV 337 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + +K+ +R IGLG+MGF L L+ IPY S EA+ AD+ MEFI + AS Sbjct: 338 NRFPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRAS 397 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 +LA+ RG++ +++GS++D M Sbjct: 398 SKLAEARGSFPAYEGSIYDVPGGRP----------------------------------M 423 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWD 817 RN+ C +IAPT T++ I GVS I+PS+ ++V++ + G+ +N + ++ Sbjct: 424 RNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHS 483 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + L + + ++E +PD LK++ TA I P W I + QK+ D A S + Sbjct: 484 KELFEKLVSSN-HLHDMECVPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNF 542 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 E + + + ++ A+ GLK R S + T + ++ Sbjct: 543 SHEATREDMANVFNLAYDKGLKGITVYRDGSRAAQPLCTSESGVKLVDQY 592 >gi|161622627|ref|YP_001595353.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage JS98] gi|160331905|gb|AAU29205.2| NrdA aerobic NDP reductase large subunit [Enterobacteria phage JS98] Length = 751 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 185/782 (23%), Positives = 316/782 (40%), Gaps = 64/782 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G F+++++ ++ C G + + E ++ DG++ D++ + Sbjct: 1 MQVQKSSGVSQDFDAQKIIKVLTWGCEG-TQIDPYELYEEIKTHLRDGMTTKDIQNLTVK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + LI +EP+Y V A+ L+ LR+EV + + ++ + EG Sbjct: 60 VAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPR-----------SFIDHISYCVNEG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERDF Y G L ++Y G E PQ Sbjct: 109 KYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E + + FY+ +S+ TP + + T Q SSC + D L Sbjct: 169 MCIGMALHQDEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R G+ I K GVIPF K + +Q Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G D R M+ + DL M+R +N T Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKNDYIT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ E + + A++ ++I A L+ +T T + Sbjct: 349 LFSPHEMGGELYYSYFEDQERFRELYEAAEKDSSIRKKRIKARDLFELFMTERSGTARIY 408 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 409 PQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNFDWQD 468 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A K R +G+G+ + + L Y Sbjct: 469 QDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASYE-- 525 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 526 DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKIDQIA 582 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 W L++ + G+RNS A+ P + + + + I+P + +K + G Sbjct: 583 APNYV-CDWSALREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKESKEG 641 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 +F V + + L+D + S+ P + T Sbjct: 642 NFRQVVPNVE---HNQGLYD---------YAWSLAKKGNKP------YLT---------- 673 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY--LRSRSA 908 + KW+ Q+ S N Y D + +K + W G K YY R S Sbjct: 674 -QVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTRDGSG 732 Query: 909 TS 910 T Sbjct: 733 TD 734 >gi|167039475|ref|YP_001662460.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoanaerobacter sp. X514] gi|300915422|ref|ZP_07132735.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X561] gi|307725199|ref|YP_003904950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X513] gi|166853715|gb|ABY92124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X514] gi|300888482|gb|EFK83631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X561] gi|307582260|gb|ADN55659.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter sp. X513] Length = 770 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 177/633 (27%), Positives = 276/633 (43%), Gaps = 84/633 (13%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343 ++L RY NG IE + F RVA +A + E FY Sbjct: 1 MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ + F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G Sbjct: 61 DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D + N + I + FMK V ++ + L P Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL DYDKL T+ AV LDNVID N Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + ++ R IGLG+MGF + L L IPY S EAVE+ +E MEFI + AS+ Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMEFIDETSKEASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA++RG + + S++ + I + Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 + I G S I+P + ++ M + VN +R + E Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ ++ GS+ +I+ IP+D+K+I A +IDP W ++ + QK +D A S + Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRIFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +E + + + Y A+ +G K R S S Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRES 562 >gi|296127718|ref|YP_003634970.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira murdochii DSM 12563] gi|296019534|gb|ADG72771.1| ribonucleoside-diphosphate reductase, alpha subunit [Brachyspira murdochii DSM 12563] Length = 771 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 214/813 (26%), Positives = 360/813 (44%), Gaps = 101/813 (12%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I+ DG FN ++L + A G++ + +L + D + L LI ++ Sbjct: 12 IIKRDGREEPFNEEKLRKVTNWATGGIEAFT-NQLLEGLNIKINDKMKIEVLYDELINTA 70 Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +I P Y + + L K+ +E + + I+ + Sbjct: 71 VNMISPLYPVYDTIAEKLYLMKIYKETCG--------LKKIGSYPHIKNFLKKGIKYKIY 122 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 + + + D +L + + + RD F Y GL I Y +Y +I ++E+PQ +M A Sbjct: 123 DKDIVKLFSDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITYMTAA 182 Query: 326 MGLALKETE--------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 M + + K + Y++LS +TP + NS T QL+SC Sbjct: 183 MFSFYNDYYKGENKDKLEISKAERLKYIKKTYDMLSRHEVTFATPRIANSMTIKAQLASC 242 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T DD + + A+ +K+SGG+ D + +R G+ I G+S G IPF+K Sbjct: 243 ILNTPDDDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPFIKRV 302 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 T + NQGG RKGA WH+DV + + L+ G + R + + I ++F + Sbjct: 303 EQTISSFNQGGVRKGACVITFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNIFRE 362 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV ++ TLF P E L++ YG++F +AY YE ++ + K+ A L ++L Sbjct: 363 RVNKDGYVTLFDPKETPLLNEEYGEKFNVAYMYYESKSSIRKKKIK----AKDLLFQILK 418 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595 + ETG+ ++TF D N V +SNLC EI + S Sbjct: 419 VRQETGNLYLTFVDNINE--QNMVNKFVGASNLCQEIVIPSYPSKLIDEKYVINEEGEYE 476 Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 E +CNL SINL + FD +K S T +R DN+ID + +++ + Sbjct: 477 IIQRKKSGEIGICNLVSINL---MSWVNFDEEKKKSFCYTLLRGCDNIIDTQFYPVKEGE 533 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R IG+G++ + + L + Y EA+E ++ + + +H AS LA+ERG Sbjct: 534 IANKKNRPIGIGVINYANLLASNKLKYTDREALEFTNKVFDDLYYHIYQASNLLAKERGP 593 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y +F S W G+ P L + ++++ + WD+L + +KT G+R S AIA Sbjct: 594 YKTFNESKWKDGLTPFHISLLNKSDKLNVSLD---KEKWDKLAEEIKTSGVRFSFHGAIA 650 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PTAT ++SI+P +V+ Sbjct: 651 PTATSGKSVSATESIEPIVDLYFVEEG--------------------------------- 677 Query: 828 DGSIGNIERIPDDLK---KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGK 883 I + + ++K + + I +IE A+ RQ++IDQ+QSLNLY +P S K Sbjct: 678 ---IQTLPSLVPNIKNNRAYYERCWAIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSAK 734 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 +L + A +GLKT YY+++ ++ E + Sbjct: 735 ELWDDIQYAMDLGLKTLYYMKT-PKSNFELEEV 766 >gi|15604373|ref|NP_220889.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia prowazekii str. Madrid E] gi|3861065|emb|CAA14965.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (nrdA) [Rickettsia prowazekii] gi|292572127|gb|ADE30042.1| Ribonucleoside-diphosphate reductase alpha chain [Rickettsia prowazekii Rp22] Length = 607 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 195/680 (28%), Positives = 297/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + + G IL DRY + E Q F RV+ A ++ A + Y Sbjct: 13 INNKYNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSHYAEN----KQHAQKLYE 63 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L I EN LA GG+G+ W Sbjct: 64 YMSQMWFMPATPILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYW 123 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR + I G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D Sbjct: 124 GNVRSINEAIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R++ +++ I D FM+ V N + L SP Sbjct: 183 IRRPTGGDVNRKSLNIHHGITITDEFMQAVENNMDFDLVSPAT----------------- 225 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV K+ A LW K+LT ETG P++ F D N P+ H V Sbjct: 226 ----------KKVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPEHHKKLGLQVK 275 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + + I + + LDNV++ Sbjct: 276 MSNLCSEITLPTGIDHLGNSRTAVCCLASLNLEYYEVWKDDKEFIHSIMLFLDNVLEDFI 335 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + R++GLG++GF S L + IP S A + E+IS Sbjct: 336 NKAPNTMARAKYAAFRERSVGLGVIGFHSFLQMKKIPIESVMAKVWNKKIFEYISAEVDK 395 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+E+ +++GA D++ + R Sbjct: 396 ASIEIGKDKGACP--------------DALDSGSNER----------------------- 418 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L L+++ Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGF 475 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + H+GS+ ++ + ++ K+I TA+EID WLIE A+ R +I Q+Q+LN+ Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNI 535 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L S K L+ I+ +AW G+K+ YY RS S +K + V D Sbjct: 536 FLHGNVSKKYLNNIHFKAWKKGIKSLYYCRSTSIQRADKVSHD--------VLKADFKDL 587 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + + EC CQ Sbjct: 588 EKQNDKLAQTRNYEECLACQ 607 >gi|326391806|ref|ZP_08213324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus JW 200] gi|325992164|gb|EGD50638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter ethanolicus JW 200] Length = 770 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 175/633 (27%), Positives = 275/633 (43%), Gaps = 84/633 (13%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343 ++L RY NG IE + F RVA +A + E FY Sbjct: 1 MKITENARKVLERRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDKNADVEAVKKRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ + F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G Sbjct: 61 DMMVALDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D + N + I + FMK V ++ + L P Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL DYDKL T+ AV LDNVID N Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYAIDYDKLRETVYDAVHFLDNVIDAN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + ++ R IGLG+MGF + L L IPY S EAVE+ +E M FI + AS+ Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSEEAVELGEELMGFIDETSKEASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA++RG + + S++ + I + Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 + I G S I+P + ++ M + VN +R + E Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ ++ GS+ +I+ IP+D+K++ A +IDP W ++ + QK +D A S + Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRVFVIAHDIDPEWHVKMQAAFQKHVDNAVSKTVNFR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +E + + + Y A+ +G K R S S Sbjct: 530 NEATVEDVRRTYLLAYELGCKGVTIYRDGSRES 562 >gi|91200074|emb|CAJ73117.1| similar to ribonucleoside-diphosphate reductase 1 alpha chain [Candidatus Kuenenia stuttgartiensis] Length = 589 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 176/635 (27%), Positives = 284/635 (44%), Gaps = 83/635 (13%) Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345 L RY G IE P+ F RVA +A + K EFY+L Sbjct: 8 LSPNAKLTLEKRYLKRNVLGKIIESPEDMFRRVAKNIASVDLIYNKKADIVSMEEEFYHL 67 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++S F+ ++P L N+G QL +CF+ V D + GIF +++ A++ K GG G ++ Sbjct: 68 MTSLQFLPNSPALMNAGRHLQQLLACFVLPVEDSIEGIFDTVKQAALIHKSGGGTGFSFS 127 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + + G + G + F+KV N+ A+NQGG R+GA A L H D+ +F+ Sbjct: 128 RIRPKNDIVSASCGMASGPVSFMKVFNEATEAINQGGFRRGANMAALNVNHPDIFDFIHA 187 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + G + N + I + FM+ V +A + L +P Sbjct: 188 KNTEG----VLTNFNISVGITNAFMEAVENDAPFPLINPRT------------------- 224 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 V + I A L+++++ ++ G P + F D N +P +G + +N C Sbjct: 225 --------KLVVKTIRAKVLFQEIVQSAWKNGEPGVLFIDAINAANPTPLLGSIEGTNPC 276 Query: 586 TEITLNSSSEETAVCNLGSINLLAH----FANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 E L C LGS+N+ + + ++ L TI AV LDNVID H Sbjct: 277 GEQPLLPY----EACVLGSVNVSQMTTYKNDHYEMNWHTLEKTIHLAVHFLDNVIDATKH 332 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + + + +R IGLG+MGF L L+I Y S EA+ D+ + F S A AS L Sbjct: 333 PLPQIEVLTKGNRKIGLGIMGFADLLIKLNISYNSEEAMRFTDKLLRFFSGKANEASERL 392 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A ERG + +++ S++ Q P RN+ Sbjct: 393 ASERGMFPNYEKSIYAQQNGPK----------------------------------YRNA 418 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820 IAPT TI+ I S I+P + Y ++ + G ++ F N K+R L+ + + Sbjct: 419 TRTTIAPTGTISIIANCSSGIEPLFAIAYTRNVLVEGGLPEIHPFFENVAKKRGLYTDKL 478 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 ++++K +GSI NI IP D+K+I TA +I P + ++ S QK+ID A S + E Sbjct: 479 LAEVKR-EGSIQNIAYIPYDIKRIFTTARDISPEYHVKIQSICQKYIDNAVSKTINFPKE 537 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + ++ ++ A+ G K R +S S S Sbjct: 538 STAEDVEKVFLLAYRSGCKGITIYRDKSRMSQALS 572 >gi|167036756|ref|YP_001664334.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115179|ref|YP_004185338.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855590|gb|ABY93998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928270|gb|ADV78955.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 770 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 173/633 (27%), Positives = 275/633 (43%), Gaps = 84/633 (13%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKR------AVEFY 343 ++L RY NG IE + F RVA +A + ++ FY Sbjct: 1 MKITENARKVLEKRYLAKDENGKPIETVEEMFERVAKTIAEVDLIYDQNADVEAVKKRFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ F+ ++PTL N+G QLS+CF+ V D + IF A++ A++ K GG G Sbjct: 61 DMMVDLDFLPNSPTLMNAGRPLGQLSACFVLPVGDSMEEIFDAVKYAAIIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGATVRSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D + N + I + FMK V ++ + L P Sbjct: 181 QCKK----DNNEITNFNISVAITEEFMKAVEEDREYDLIDPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 KV ++ A ++ ++ M + G P I F D N ++P VG + S+N Sbjct: 220 ----------GKVVNRLRAREVFDLIVEMAWRNGEPGIVFLDRINEKNPTPEVGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL DYDKL T+ AV LDNVID N Sbjct: 270 PCGEQPLLPY----ESCNLGSINLENMLKKVEGRYVIDYDKLRETVYDAVHFLDNVIDAN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + ++ R IGLG+MGF + L L IPY S EAV++ +E MEFI + AS+ Sbjct: 326 KYPLPQIEEMTKGTRKIGLGVMGFANMLLRLGIPYDSDEAVKLGEELMEFIDETSKEASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA++RG + + S++ + I + Sbjct: 386 KLAEQRGTFGFYDKSIYKKMGIKIRNATTTTIAPTGTI---------------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 + I G S I+P + ++ M + VN +R + E Sbjct: 424 -------------SIIAGTSSGIEPVFAIAMTRNVMDNTELVEVNPVFKEVAIERGFYSE 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ ++ GS+ +I+ IP+D+K++ A +ID W ++ + QK +D A S + Sbjct: 471 ELMREIARR-GSLKDIKGIPEDVKRVFVIAHDIDHEWHVKMQAAFQKHVDNAVSKTVNFR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +E + + + Y A+ +G K R S S Sbjct: 530 NEATVEDVRRTYLLAYKLGCKGVTIYRDGSRES 562 >gi|125972577|ref|YP_001036487.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium thermocellum ATCC 27405] gi|256005139|ref|ZP_05430108.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum DSM 2360] gi|281416768|ref|ZP_06247788.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum JW20] gi|125712802|gb|ABN51294.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum ATCC 27405] gi|255990886|gb|EEU00999.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum DSM 2360] gi|281408170|gb|EFB38428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum JW20] gi|316941185|gb|ADU75219.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium thermocellum DSM 1313] Length = 794 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 167/671 (24%), Positives = 279/671 (41%), Gaps = 84/671 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343 +++L RY NG+ +E P+ F RVA +A + E EFY Sbjct: 1 MNLTENAIKVLKKRYLAKDENGNLLEDPEGMFRRVARTVASADKEYVSEEELKSIEQEFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ + F+ ++PTL N+G QLS+CF+ + D + GIF ++ A++ K GG G Sbjct: 61 DMMVNLDFLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA ++ T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRPKGASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDIVEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +KN D + N + I + FM V N + L P Sbjct: 181 TCKKNNAD----ITNFNISVGITEEFMNAVENNEYYNLVEPHT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 K+ K +A ++ ++ M + G P I F D N + +G + S+N Sbjct: 220 ----------GKIVGKQNAREIFDLIVDMAWNNGEPGIIFLDRLNKDNVTPELGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL + D+ KL +T+ AV LDNVID+N Sbjct: 270 PCGEQPLLPY----EACNLGSINLSNMLKYVDGKPEVDFAKLRTTVWKAVHFLDNVIDVN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + K R IGLG+MG+ L L+IPY S ++++A++ M FI + AS+ Sbjct: 326 KYPLPEIDKMTRGTRKIGLGVMGWADMLCKLNIPYNSQSSIDLAEKIMHFIQDESRKASM 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+++G + + S++ + + Sbjct: 386 ELAEKKGVFPYYDKSIYKNLGIRVRNATTTTIAPTGTL---------------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 + I GVS I+P + Y+++ M + VN K+ + + Sbjct: 424 -------------SIIAGVSSGIEPLFAISYIRNVMDNDELVEVNPVFKQVAKEEGFYSD 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ + GSI + IP+ ++ + TA +I P W + + QK+ D A S + L Sbjct: 471 ELMRRIAK-KGSIRGFDEIPEWIQDVFVTAHDISPDWHVRMQAAFQKYTDNAVSKTVNLR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 +E + K + + A+ K R S + K + + + + Sbjct: 530 NEATRKDVADAFWLAYKTNCKGITIYRDGSRDLQVLNIGKVKGKEESVSKAREEGPAKPK 589 Query: 938 LGIPSSCTSDT 948 I Sbjct: 590 EQIKPVSGIAP 600 >gi|311232338|gb|ADP85192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio vulgaris RCH1] Length = 754 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 166/661 (25%), Positives = 281/661 (42%), Gaps = 90/661 (13%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VE 341 D A +L RY+ +G ++E + F RVA +A +ET+ E E Sbjct: 14 DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 73 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 74 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 133 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G I FL++ N + QGG R+GA L H D+ + Sbjct: 134 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 193 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ ++ N + + + FM+ V + + L +P Sbjct: 194 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHS--------------- 234 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 ++ A ++ ++ +E+G P I F D N +P G + S Sbjct: 235 ------------GLEKGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 282 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----------DYDKLASTIRTAVRV 631 +N C E L CNLGS+NL A F D+ L I VR Sbjct: 283 TNPCGEQPLLPY----EACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 338 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID + +E+ + H +R IGLG+MG+ L L I Y SPEA+ + + M F+ Sbjct: 339 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 398 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +AS +LA+ERG + ++ S + Sbjct: 399 DEGRAASKQLAKERGPFPAYPASTFA------------ERDLGP---------------- 430 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810 RN+ IAPT T++ + G S I+P + + + M G+ VN Sbjct: 431 ------YRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 484 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + ++ + GSI ++ +P+ ++++ TA +I+P+W ++ + Q++ D A Sbjct: 485 RAEGCHSPRLMETVAS-KGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 543 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 S + L + + + + IY A+ G K R + T G Sbjct: 544 VSKTVNLPNNATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEAEGK 603 Query: 930 D 930 Sbjct: 604 G 604 >gi|46581780|ref|YP_012588.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio vulgaris str. Hildenborough] gi|46451203|gb|AAS97848.1| ribonucleoside-diphosphate reductase [Desulfovibrio vulgaris str. Hildenborough] Length = 777 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 166/661 (25%), Positives = 281/661 (42%), Gaps = 90/661 (13%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VE 341 D A +L RY+ +G ++E + F RVA +A +ET+ E E Sbjct: 37 DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 96 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 97 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 156 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G I FL++ N + QGG R+GA L H D+ + Sbjct: 157 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 216 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ ++ N + + + FM+ V + + L +P Sbjct: 217 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHS--------------- 257 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 ++ A ++ ++ +E+G P I F D N +P G + S Sbjct: 258 ------------GLEKGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 305 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----------DYDKLASTIRTAVRV 631 +N C E L CNLGS+NL A F D+ L I VR Sbjct: 306 TNPCGEQPLLPY----EACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 361 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID + +E+ + H +R IGLG+MG+ L L I Y SPEA+ + + M F+ Sbjct: 362 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 421 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +AS +LA+ERG + ++ S + Sbjct: 422 DEGRAASKQLAKERGPFPAYPASTFA------------ERDLGP---------------- 453 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810 RN+ IAPT T++ + G S I+P + + + M G+ VN Sbjct: 454 ------YRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 507 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + ++ + GSI ++ +P+ ++++ TA +I+P+W ++ + Q++ D A Sbjct: 508 RAEGCHSPRLMETVAS-KGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 566 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 S + L + + + + IY A+ G K R + T G Sbjct: 567 VSKTVNLPNNATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEAEGK 626 Query: 930 D 930 Sbjct: 627 G 627 >gi|319942043|ref|ZP_08016362.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804427|gb|EFW01305.1| IIV-6 RIR1 intein containing protein [Sutterella wadsworthensis 3_1_45B] Length = 591 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 192/683 (28%), Positives = 288/683 (42%), Gaps = 102/683 (14%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +A + +ERD F+ LGL L + Y PQ F VA A Sbjct: 1 MAVQMNFERDKLFDELGLMRLRESYMRSSEK----SPQERFAFVAETFGSNPE----HAQ 52 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 Y+ S STP L ++ SCFLT + D G+ L E L+ GG+ Sbjct: 53 RIYDYASRHWLSFSTPILSFGRSKKGLPISCFLTYMEDSAEGLVDTLSEVNWLSMLGGGV 112 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G I + KS GV+P LKV + +A QG R+G+ A+L+ H D+ Sbjct: 113 GIHV--------RIRSADEKSVGVMPHLKVYDAACLAYRQGSTRRGSYAAFLDIDHPDII 164 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 F+++RK TGD + +++ + D FM+++ + + Sbjct: 165 PFIEMRKPTGDQNMKALNLHHGVNLSDAFMEKIEASMR--------------------DS 204 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVG 577 +Y++ +V K+SA LW+++L M TG P++ F D N P Sbjct: 205 SYDDTWELRHPSTHEVVAKVSARDLWQRILEMRMHTGEPYLVFIDTANRALPSWLKDKGL 264 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635 +H SNLCTEI L +S + TAVC L S+NL ++ I A+ +LDNV Sbjct: 265 SIHGSNLCTEIFLPTSHDRTAVCCLSSLNLE-----YFDEWKNNQQFITDAMELLDNVLQ 319 Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 ID I +A+ S R++GLG +GF + L +P+ S A I + I Sbjct: 320 YFIDHAPDQIARARYSAMRERSVGLGALGFHAYLQKKGVPFESAAAKSINKQVFRMIRTA 379 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A +L ERGA S Sbjct: 380 CAEADKKLCAERGACPDAADSGVS------------------------------------ 403 Query: 754 KTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 R S+ M++AP A+ + I G S SI+P N+Y + +SG + + N FL +L + Sbjct: 404 ----RRFSHWMSVAPNASSSLIMGGTSPSIEPYRANIYRQDTISGAYIMKNRFLKAKLAE 459 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 L E + +DL HDGSI + + IP D+K + TA EID W++E A+ RQ++IDQ QS Sbjct: 460 LGLDTEEVWADLIAHDGSIQHRDDIPQDVKDVFKTAPEIDQRWIVELAADRQEFIDQGQS 519 Query: 873 LNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 +NL+ + S L + AW GLK+ YY RS K + V V Sbjct: 520 VNLFFPPDVSIAYLHACHFLAWKKGLKSLYYNRS------------DKLRKADRVGVKAE 567 Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954 + ++ C C+ Sbjct: 568 RKRIEDEIDMRAVADNSTCLACE 590 >gi|289432245|ref|YP_003462118.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] gi|288945965|gb|ADC73662.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] Length = 866 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 201/801 (25%), Positives = 327/801 (40%), Gaps = 119/801 (14%) Query: 156 SFNSKRLEMI--VEEACSGLQD-VSSKIVLSETYKNMYDGLS---ESDLETALIFSSRTL 209 N R+ V A G+ D V + ++S+ K + + DL + + + L Sbjct: 12 PVNRNRVARAMFVAAASMGISDRVQIETLISQLIKRLEKPVGLPGMEDLLPSDLKAPAVL 71 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 + ++ + +EVL K Q + + P ++ +KA Sbjct: 72 ATDDE----------IDIMVKEVLDAGNKDKQNQIETQAKEEEPMPVKVQVKSEMKADAR 121 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL 328 E + + +L RY G E + F RVA + Sbjct: 122 TEGL------------------KLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTI 163 Query: 329 ALKETEKEK------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 A+ E R EF+NL++ F+ ++PTL N+G QLS+CF+ V D + Sbjct: 164 AMGELIYNPKADVRSREDEFFNLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIES 223 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF A++ AM+ K GG G ++ +R + T G + G + F++ + + QGG Sbjct: 224 IFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGG 283 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA A L H D+ +F+ + D + N + I D FM+ V + L Sbjct: 284 TRRGANMAILSIDHPDIMKFV----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLL 339 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P +V ++A ++ K++ M ++TG P I Sbjct: 340 NPH---------------------------NGEVVSSLNASEVFNKIVHMAWKTGDPGIV 372 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDY 618 F D N +P +G + S+N C E L CNLGSINL N DY Sbjct: 373 FIDRINAYNPTPQLGRIESTNPCGEQPLLPY----ESCNLGSINLSRMVTVSGGQNTVDY 428 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL+ I++AVR LDNVID+N + + + R IGLG+MGF L L +PY S Sbjct: 429 KKLSRVIKSAVRFLDNVIDVNKFPLPQIDEMTKKSRKIGLGVMGFADMLLELGVPYNSEN 488 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 ++++A+E M F++ A S ELA ERG + +++GS++++ P Sbjct: 489 SIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSGRP---------------- 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG- 797 MRN++C IAPT T++ I G S I+P + + ++ + G Sbjct: 533 -------------------MRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGT 573 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 VN + K+ + E +I L G+ + +P D K + TA +I P W + Sbjct: 574 KMIEVNPYFERAAKEGGYYSEELIKSLAE--GAHLDEVDVPQDAKDLFVTAHQIVPEWHV 631 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + QK D A S + +G+ + +Y+ A LK R S ST Sbjct: 632 RIQAAFQKCTDNAVSKTVNFSRDAGECDVAEVYKMAHARNLKGITIYRDGSREDQPMSTG 691 Query: 917 KGVDGKLNAVPVTDPNSSTHS 937 K + +PN Sbjct: 692 KAENKIETPAVAVNPNLMPRK 712 >gi|51473695|ref|YP_067452.1| ribonucleotide-diphosphate reductase subunit alpha [Rickettsia typhi str. Wilmington] gi|51460007|gb|AAU03970.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington] Length = 607 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 195/680 (28%), Positives = 297/680 (43%), Gaps = 95/680 (13%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + + + G IL DRY + E Q F RV+ A ++ A + Y Sbjct: 13 INNKYNNLLTPFGKAILRDRYLMKG-----EDFQDLFARVSSYYAEN----KQHAQKLYE 63 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L I EN LA GG+G+ W Sbjct: 64 YMSQMWFMPATPILSNGGTERGLPISCFLNETDDSLDDIVNLWMENVWLAARGGGIGSYW 123 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 VR + I G S G+IPF+KV + +A++QG R+G+ YL H ++EEF+D Sbjct: 124 GNVRSINEAIRD-KGHSSGIIPFIKVMDSMTLAISQGSIRRGSSAVYLPINHPEIEEFID 182 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +R+ TG D R++ +++ I D FM+ V N + L SP Sbjct: 183 IRRPTGGDVNRKSLNIHHGITITDEFMQAVENNMDFDLVSPAT----------------- 225 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV K+ A LW K+LT ETG P++ F D N P H V Sbjct: 226 ----------KKVANKVRARDLWIKLLTTRIETGEPYLLFIDSVNKTIPAHHKKLGLQVK 275 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + + I + + LDNV++ Sbjct: 276 MSNLCSEITLPTGIDHLGKSRTAVCCLSSLNLEYYEVWKDDKEFIHSIMLFLDNVLEDFI 335 Query: 641 HTIEKAK----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + R++GLG++GF S L + +P S A + E+IS Sbjct: 336 NKAPNTMARAKYAAFRERSVGLGVIGFHSFLQMKKVPIESVMAKVWNKKIFEYISSEVDK 395 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS+E+A+++GA D++ + R Sbjct: 396 ASIEIAKDKGACP--------------DALDSGSNER----------------------- 418 Query: 757 GMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 SN AIAPTA+I+ I G S I+P N +V+ ++G F V N L L+++ Sbjct: 419 ---FSNKTAIAPTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEQLLEEKGF 475 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + H+GS+ ++ + ++ K+I TA+EID WLIE A+ R +I Q+Q+LN+ Sbjct: 476 NNDQVWSSIATHEGSVQHLTFLSEEEKQIFKTAYEIDQNWLIELAADRTPYITQSQALNI 535 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L S K L+ I+ +AW G+K+ YY RS S +K + V D Sbjct: 536 FLHGNVSKKYLNNIHFKAWKKGIKSLYYCRSTSIQRADKVSHD--------VLKADFKDL 587 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + + EC CQ Sbjct: 588 EKQNAKLAQTRNYEECLACQ 607 >gi|120601069|ref|YP_965469.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio vulgaris DP4] gi|120561298|gb|ABM27042.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio vulgaris DP4] Length = 781 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 166/661 (25%), Positives = 280/661 (42%), Gaps = 90/661 (13%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VE 341 D A +L RY+ +G ++E + F RVA +A +ET+ E E Sbjct: 41 DVALNPNAAVVLAKRYYRKGASGEQLEDARDMFWRVASAIAAEETKYEASTWKHEDLARE 100 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 101 FYDLMTGWRFLPNSPTLMNAGTDLGQLSACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTG 160 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G I FL++ N + QGG R+GA L H D+ + Sbjct: 161 FSFSRLRPKESRVGSTGGVASGPISFLRIFNTATEQIKQGGTRRGANMGILRIDHPDIMD 220 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ ++ N + + + FM+ V + + L +P Sbjct: 221 FIRAKERDGE----FNNFNLSVALTEAFMQAVENDEDYPLIAPHS--------------- 261 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 ++ A ++ ++ +E+G P I F D N +P G + S Sbjct: 262 ------------GLEKGRLKAREVFELLVRKAWESGDPGIVFIDRINRDNPTPDQGEIES 309 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF----------DYDKLASTIRTAVRV 631 +N C E L CNLGS+NL A F D+ L I VR Sbjct: 310 TNPCGEQPLLPY----EACNLGSVNLSAFFIPGHENDPNPADKGVDWKALKRVIHLGVRF 365 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID + +E+ + H +R IGLG+MG+ L L I Y SPEA+ + + M F+ Sbjct: 366 LDNVIDASRFPLERITERVHQNRKIGLGVMGWADLLFQLRIAYDSPEALHLGERMMAFVR 425 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 +AS +LA+ERG + ++ S + Sbjct: 426 DEGRAASKQLAKERGPFPAYPASTFA------------ERDLGP---------------- 457 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNEL 810 RN+ IAPT T++ + G S I+P + + + M G+ VN Sbjct: 458 ------YRNATVTTIAPTGTLSILAGCSSGIEPLFALSFARHVMDGERLVEVNPHFEAAA 511 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + ++ + GSI ++ +P+ ++++ TA +I+P+W ++ + Q++ D A Sbjct: 512 RAEGCHSPRLMETVAS-KGSIHGMDHLPEAMRRVFVTAMDIEPVWHLKMQAAFQQYTDNA 570 Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 S + L + + + IY A+ G K R + T G Sbjct: 571 VSKTVNLPNSATIEDIRNIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGEKKAEGEAEGK 630 Query: 930 D 930 Sbjct: 631 G 631 >gi|327311809|ref|YP_004338706.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20] gi|326948288|gb|AEA13394.1| ribonucleotide reductase [Thermoproteus uzoniensis 768-20] Length = 877 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 204/873 (23%), Positives = 356/873 (40%), Gaps = 96/873 (10%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 +K++ G F+ ++L + + A + + VS E ++ ++L + Sbjct: 29 AVKVIKASGAKEDFSEEKLRISLVRAAADV-GVSVD---GEVKIRPTSDITSAELSDLVE 84 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 +P A+ LL ++ +E L + + + Y E +E Sbjct: 85 LELLRKAIDKPELAEAAKSHLLGRIYKEALGKDFLRD--------KSKYGERVFASVERL 136 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHING-SRIEMPQAFF 321 V A LL + + L ++ LK E D + Y L++ + Y L E P A Sbjct: 137 VSAGLLKQEALSA-LRWVE--LKPEFDRSLSYNALRLFTNGNYALRGPDFKIAETPAAA- 192 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 A +A + A +Y+ ++S + ++P FN+ T+ +SCF V D L Sbjct: 193 ---AARVATAVAGSPEAARLYYDAITSLRIVPASPFWFNAWTKKEMFASCFTLEVEDCLS 249 Query: 382 G--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 I+ AL + ++ + GG+G D++ +R G + G+ G + G I F+K+ + Sbjct: 250 SLTHPGRYCIYDALAYSGIIQQLGGGVGYDFSLLRPEGDVVRGSVGVASGPISFMKLFDA 309 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR- 492 + QGGKR+GA L WH D+ +F+ + D + N + ++ D FM++ Sbjct: 310 NVDVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDA-HLQNFNISVFVDDTFMEKA 368 Query: 493 --VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 V QN + L +P D K E E + R I ++ A L+R++ Sbjct: 369 LGVDQNPKYPLINPRVFYD--KTGQKAVEHVDVYKEAEVPRDAIWG--EVDASQLFREIS 424 Query: 551 TMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVC 600 +++G P + FK N +P + + S N C E N VC Sbjct: 425 NSAWDSGDPGLIFKANLNASNPLLGEEIEVAGYRFTYIWRSVNPCAETVQNPF----EVC 480 Query: 601 NLGSINLLAHFANNQ-----------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 NL INL+ +N D++ LA R R LD+ ID + IE + Sbjct: 481 NLTHINLVKFIKDNCAGSSFEEKLACIDWEGLAQAARLGTRFLDSAIDRSRTGIEIVDEM 540 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 N R GLG+MGF L L IPYAS EAVE+ + M +I +A+ AS +LA+E+G + Sbjct: 541 NSATRKNGLGIMGFAELLIKLGIPYASWEAVELINRIMGWIYVNALDASADLAREKGPFK 600 Query: 710 SFKGSLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI---------- 756 F+ S++ +G P R + R D L++ + Sbjct: 601 YFEKSIYARGELPALKFQDFVWSRWERVKHVYPPELRDAGDRLREITERTRQWLLPYIEK 660 Query: 757 -------GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 G+RNS ++IAPT + + G + I+P + ++++ G + Sbjct: 661 LKEKVKGGVRNSVVLSIAPTGRTSILAGTTSGIEPVFALAFLRNVTVGTLVEYYEPGIEY 720 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 LK R LW A+ ++ G + + +P+D+K + ATA EI +W + + Q+W+DQ Sbjct: 721 LKARGLWTPAVRKAVEET-GMLRDAP-VPEDVKHLLATAMEIGWLWHVLMQASAQQWVDQ 778 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTLKGV 919 S + + + + + AW +G+K R +S + K L Sbjct: 779 GISKTINMPANAPSDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGLKQEIKKKLAET 838 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950 + + + + + D C Sbjct: 839 KITVRPISLETSIDEAANEVKLKALEEGKDPYC 871 >gi|188584791|ref|YP_001916336.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349478|gb|ACB83748.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Natranaerobius thermophilus JW/NM-WN-LF] Length = 752 Score = 389 bits (1000), Expect = e-105, Method: Composition-based stats. Identities = 176/671 (26%), Positives = 289/671 (43%), Gaps = 83/671 (12%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--------F 342 +L RY E P+ RVA +A E + ++ + F Sbjct: 1 MELTKNAKMVLEKRYLKTNEKGETENPEDMLKRVADNIAQVEKDVYQKDKQEVSKVSQNF 60 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 ++L+ + +FM ++PTL N+G QL++CF+ + D + IF A++ A++ K GG G Sbjct: 61 FDLMDNQYFMPNSPTLMNAGRELQQLAACFVLPIEDSMESIFEAIKNAALIHKSGGGTGF 120 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 ++ +R + T G + G + F+KV N AV QGG R+GA L H D++EF Sbjct: 121 SFSNLRPKNDIVLSTGGVASGPVSFMKVFNSATEAVKQGGTRRGANMGILRVDHPDIQEF 180 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 + K D+ + N + I + FM+ V Q+ ++L +P Sbjct: 181 I-TCKRDSDEIN---NFNISVGITEEFMEAVKQDGEYSLKNPK----------------- 219 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 + + + A ++ K++ M + G P I F D N +P H+G + S+ Sbjct: 220 ----------NGQAVKTLRAREVFDKIVEMAWGNGEPGIVFIDKMNENNPTPHIGEIEST 269 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 N C E L CNLGS+NL N DY L T+ TAV LDNVID N + Sbjct: 270 NPCGEQPLLPF----ESCNLGSVNLSKMVNNGAVDYQLLKETVHTAVHFLDNVIDANRYP 325 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + +K++ +R IGLG+MGF L L IPY S EA+++A++ M +I + + S ELA Sbjct: 326 LPEIEKTSKENRKIGLGVMGFGDMLFKLRIPYNSQEALDLAEKVMGYIDQESKAKSQELA 385 Query: 703 QERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 +ERGA+ +FKGS++DQ G PI + Sbjct: 386 KERGAFPNFKGSIYDQKGEEPIRNATTTTIAPTGTI------------------------ 421 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 + +CG S I+P + + ++ + D VN ++ + + Sbjct: 422 -----------SILCGTSSGIEPLFALAFTRNVLDNDKLVEVNPVFKEATEEAGCYSSEL 470 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DE 879 + + GSI +I+ IPD +KK+ T+ +I P W ++ + QK D A S + L +E Sbjct: 471 MEKVA-DKGSIQDIDEIPDSIKKVFVTSHDISPEWHLKMQAAFQKATDNAVSKTVNLPNE 529 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 K + IY A + K R S T V +++ + + Sbjct: 530 ADLKDVYEIYNLAHELNCKGVTVYRDGSRDTQVLQTSKAKSKQEEQKQQKPQKSEPKEGR 589 Query: 939 GIPSSCTSDTE 949 + Sbjct: 590 AGEIVPRKRPD 600 >gi|147668970|ref|YP_001213788.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides sp. BAV1] gi|146269918|gb|ABQ16910.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. BAV1] Length = 866 Score = 389 bits (1000), Expect = e-105, Method: Composition-based stats. Identities = 201/801 (25%), Positives = 328/801 (40%), Gaps = 119/801 (14%) Query: 156 SFNSKRLEMI--VEEACSGLQD-VSSKIVLSETYKNMYDGLS---ESDLETALIFSSRTL 209 N R+ V A G+ D V + ++S+ K + + DL + + + L Sbjct: 12 PVNRNRVARAMFVAAASMGISDRVQIETLISQLIKRLEKPVGLPGMEDLLPSDLKAPAVL 71 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 + ++ + +EVL K Q + + P ++ +KA Sbjct: 72 ATDDE----------IDIMVKEVLDAGNKDKQNQIETQAKEEEPMPVKVQVKSEMKADAR 121 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGL 328 E + + +L RY G E + F RVA + Sbjct: 122 TEGL------------------KLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTI 163 Query: 329 ALKETEKEK------RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 A+ E R EF+NL++ F+ ++PTL N+G QLS+CF+ V D + Sbjct: 164 AMGELIYNPKADVRSREDEFFNLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIES 223 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF A++ AM+ K GG G ++ +R + T G + G + F++ + + QGG Sbjct: 224 IFDAVKHTAMIHKSGGGTGFSFSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGG 283 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA A L H D+ +F+ + D + N + I D FM+ V + L Sbjct: 284 TRRGANMAILSIDHPDIMKFV----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLL 339 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P +V ++A ++ K++ M ++TG P I Sbjct: 340 NPH---------------------------NGEVVSSLNASEVFNKIVHMAWKTGDPGIV 372 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDY 618 F D N +P +G + S+N C E L CNLGSINL N DY Sbjct: 373 FIDRINAYNPTPQLGRIESTNPCGEQPLLPY----ESCNLGSINLSRMVTVSGGQNTVDY 428 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 KL+ I++AVR LDNVID+N + + ++ R IGLG+MGF L L +PY S Sbjct: 429 KKLSRVIKSAVRFLDNVIDVNKFPLPQIEEMTKKSRKIGLGVMGFADMLLELGVPYNSEN 488 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 ++++A+E M F++ A S ELA ERG + +++GS++++ P Sbjct: 489 SIKLAEEIMCFVNDEAHKFSSELAVERGVFPAYRGSIYEKSGRP---------------- 532 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG- 797 MRN++C IAPT T++ I G S I+P + + ++ + G Sbjct: 533 -------------------MRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGT 573 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 VN + K+ + E +I L G+ + +P D K + TA +I P W + Sbjct: 574 KMIEVNPYFERAAKEGGYYSEELIKSLAE--GAHLDEVDVPQDAKDLFVTAHQIVPEWHV 631 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + QK D A S + +G+ + +Y+ A LK R S ST Sbjct: 632 RIQAAFQKCTDNAVSKTVNFSRDAGECDVAEVYKMAHASNLKGITIYRDGSREDQPMSTG 691 Query: 917 KGVDGKLNAVPVTDPNSSTHS 937 K + +PN Sbjct: 692 KAENKIETPAVAVNPNLMPRK 712 >gi|299779175|ref|YP_003734369.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage IME08] gi|298105904|gb|ADI55548.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage IME08] Length = 755 Score = 389 bits (999), Expect = e-105, Method: Composition-based stats. Identities = 181/788 (22%), Positives = 313/788 (39%), Gaps = 70/788 (8%) Query: 142 APKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETA 201 +++ G F+++++ ++ C G + + E ++ DG++ D++ Sbjct: 2 EEIMQVQKSSGVSQDFDAQKIIKVLTWGCEG-TQIDPYELYEEIKSHLRDGMTTKDIQNL 60 Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + + LI +EP+Y V A+ L+ LR+EV + + ++ + Sbjct: 61 TVKVAANLISVEEPDYQYVAAKQLMFALRKEVYGQFEPR-----------SFIDHISYCV 109 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQ 318 EG L ++ +L + +K+ERDF Y G L ++Y G E PQ Sbjct: 110 NEGKYDPELLSRYSAEEITFLESHIKHERDFELTYAGAMQLKEKYLVKDKTTGKIYETPQ 169 Query: 319 AFFMRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 M + M L +E + + FY+ +S+ TP + + T Q SSC + Sbjct: 170 FAIMCIGMALHQEEPGNRLAHIIRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAG 229 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L I G+G + +R G+ I K GVIPF K + Sbjct: 230 DSLKSINKTANSIIEYISKRAGIGINVGMIRAEGSRIGMGEVKHTGVIPFWKHFQTAVKS 289 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 +QGG R GA AY WH++VE L L+ N G D R M+ + DL M+R +N Sbjct: 290 CSQGGIRGGAATAYYPIWHLEVENLLVLKNNKGVDENRIRHMDYGIQLNDLMMERFGKND 349 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 TLFSP E+S E + + A++ ++I A L+ +T T Sbjct: 350 YITLFSPHEMSGELYHSYFEDQDRFRELYEAAEKDPSIRKKRIKARDLFELFMTERSGTA 409 Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-- 614 + F D N +P + + SNLC EI + ++ + +G L A +N Sbjct: 410 RIYPQFVDNTNNFTPFIREKAPIRQSNLCCEIAIPTTDVNSPDAEIGLCTLSAFVLDNFD 469 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D DK+ VR LDN++D + + +A K R +G+G+ + + L Y Sbjct: 470 WQDQDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASY 528 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 +A ++ E E + + I AS++LA+E+G + + W +G PID + D Sbjct: 529 E--DANDLTHELFERLQYGLIRASIKLAEEKGPCEYYSDTKWSRGELPIDWYN---KKID 583 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 ++A W L++ + G+RNS A+ P + + + + I+P + +K + Sbjct: 584 QIAAPNYV-CDWTSLREDLAKHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKES 642 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G+F V + + + ++ A+ + Sbjct: 643 KEGNFRQVVPNV--------------------------------EHNQGLYDYAWTLAKK 670 Query: 855 W---LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY-- 902 + KW+ Q+ S N Y D + + W G K YY Sbjct: 671 GNKPYLTQVVIMLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLLYFWYYGGKNLYYHN 730 Query: 903 LRSRSATS 910 R S T Sbjct: 731 TRDGSGTD 738 >gi|326536453|ref|YP_004300884.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage 65] gi|312262799|gb|ADQ53055.1| NrdA aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage 65] Length = 751 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 190/792 (23%), Positives = 320/792 (40%), Gaps = 81/792 (10%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ G F+ ++ +V+ AC GL+ +L + +G+S D++ +I + Sbjct: 4 TVLKSSGITEEFSFDKIFKVVDFACQGLEA-DPHTILEAAKPAIMEGMSTKDIQKLVIKA 62 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + LI EP+Y V R + LR++V ++ + G Sbjct: 63 AVDLISVDEPDYQYVAGRLTMYALRKKVYNQFDPPHI-----------YDHVKGLVASGH 111 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322 R L + + L + + RD F Y G ++Y + NG+ E PQ +M Sbjct: 112 YDRDLIYKYSEKEYEILQGIIDHTRDMNFTYAGAMQYKEKYLVKDRSNGTIYETPQFAYM 171 Query: 323 RVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 AM L +E ++ + ++FYN S+F TP L T Q SSC D L Sbjct: 172 LQAMCLHQEEDVSKRLEYVIDFYNAASNFEISLPTPILSGVRTPTRQFSSCVKIESGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + G+G + +R G+ I GVIPF K + +Q Sbjct: 232 ESIGETSKAIMKYISRRAGIGINGGAIRAEGSRIRSGEVSHTGVIPFWKHFTTGVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R G+ WH++VE+ L L+ N G + R +++ I F++R+ ++ T Sbjct: 292 GGVRGGSGNINYPMWHLEVEKLLVLKNNKGTEETRIRNIDYTVHINKFFIERLKEDGYIT 351 Query: 501 LFSPDE-----VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LFSPD D +D +F Y+ E + ++I A L+ MLT Sbjct: 352 LFSPDIDNGLLYKDFYDSDSSKFIERYKKLEMNHVIRK----KRIKAADLFTTMLTERAG 407 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------TLNSSSEETAVCNLGSINLLA 609 TG + F D N ++P ++ + +NLC EI + EE A+C L +INL Sbjct: 408 TGRIYAMFVDNVNKQTP--YIEPIKMTNLCVEIKSSRHNPMADKDEEIALCTLSAINLGK 465 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 R VR LDN++D + ++ A+K R++G+G++ L Sbjct: 466 IKTT-----SDYIRLSRIIVRALDNLLDYQDYPVKAAEK-AKKRRSLGIGVVNLAYFLAK 519 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y SPEA+ + E E I F I AS+ELA+ERGA + W +G+ PID Sbjct: 520 NFVNYNSPEALALVHEHFEAIQFSHIRASMELAKERGASEWHDRTKWSKGLLPIDWYNKN 579 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + L + W+ L+ + G+RN A P+ + + + + ++P L Sbjct: 580 VD----LLTPNVLKQDWEWLRTEILKYGLRNDTLTAQMPSESSSQLLNATNGVEPVRALL 635 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 K++ G F + +++ + D+ + + A Sbjct: 636 STKASKDGAFNQLVP----------------------------DVDILSDEYQTLWAMVR 667 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNL-YLD------EPSGKKLDFIYRQAWLMGLKTTYY 902 E + + QK+ DQ S+N Y+ + + A GLK YY Sbjct: 668 ENGMTGYLSICAVIQKFFDQGISVNTSYIPQSYKSGKVPVSVMLKDLVFAQKYGLKAMYY 727 Query: 903 --LRSRSATSVE 912 R + + +E Sbjct: 728 HNTRDGNESDIE 739 >gi|116326447|ref|YP_803167.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32] gi|115344040|gb|ABI95049.1| ribonucleotide reductase A subunit [Enterobacteria phage RB32] Length = 754 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 187/792 (23%), Positives = 323/792 (40%), Gaps = 62/792 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + EG Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + KW+ Q+ S N Y D + + W G+K YY +R + Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735 Query: 911 VEKSTLKGVDGK 922 + ++ + Sbjct: 736 TDDYEIETPKAE 747 >gi|113951988|gb|ABI48928.1| NrdA [Enterobacteria phage T2H] Length = 754 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 187/792 (23%), Positives = 323/792 (40%), Gaps = 62/792 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + EG Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + KW+ Q+ S N Y D + + W G+K YY +R + Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735 Query: 911 VEKSTLKGVDGK 922 + ++ + Sbjct: 736 TDDYEIETPKAE 747 >gi|297568305|ref|YP_003689649.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurivibrio alkaliphilus AHT2] gi|296924220|gb|ADH85030.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurivibrio alkaliphilus AHT2] Length = 755 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 174/658 (26%), Positives = 289/658 (43%), Gaps = 78/658 (11%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYN 344 F + +L RY G +E PQ RVA +A E E A+EFY Sbjct: 20 KFSANAMTVLKRRYLKKDEQGKVLESPQRMLWRVASTIANSERLYDATADTEALAMEFYR 79 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L++ FM ++PTL N+G + QLS+CF+ + D + IF A+++ A++ + GG G + Sbjct: 80 LMAELDFMPNSPTLMNAGRKLGQLSACFVLPIEDSMPSIFEAVKQTALIHQSGGGTGFSF 139 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R +H T G S G + F+ V + + QGG R+GA A L H D+ +F+ Sbjct: 140 SRIRPKNDVVHSTKGISSGPLSFMSVFDCATETIKQGGTRRGANMAILRVDHPDIMDFIK 199 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ D H+ N + I D FM+ + +N + L +P Sbjct: 200 VK----SDLDVLHNFNLSVAITDEFMRALAENGDYALINPR------------------- 236 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++ R +A L+R+++ + +G P + F D N +P G + S+N Sbjct: 237 --------NGEIVRYQNAAKLFRQIVKQAWLSGEPGVVFIDRINAENPTPEAGEIESTNP 288 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C E L CNLGSINL + + DY++L + TAV LDNV+DIN + + Sbjct: 289 CGEQPLLPY----ESCNLGSINLANMVKDGKLDYERLGYCVDTAVHFLDNVVDINNYPLP 344 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + ++ +R IGLG+MGF L L IPY+S EAVE+A+ M FI A+ AS+ L + Sbjct: 345 EIEQVTKQNRKIGLGVMGFADLLVQLEIPYSSQEAVELAEALMRFIDERALKASIALGKS 404 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RGA+ +F S++ + +RN+ Sbjct: 405 RGAFPNFPDSIYGRQDP---------------------------------KTPVRNATRT 431 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ + G S ++P + +++ M + VN K+ + ++ Sbjct: 432 TIAPTGTISILAGCSSGVEPLFAVAFLRRVMDNDELFEVNPRFEKIAKEEGFYSHELVKQ 491 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + H+G++ +E IP ++I TA +I P I + Q+ + A S + + + Sbjct: 492 IA-HNGTLAGLEEIPAKYRRIFETAHDITPENHIAIQASFQRHTNNAVSKTINFPHQATE 550 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 +++ Y A+ + K R + + K AVPV Sbjct: 551 EEVRQAYLLAYELNCKGMTIYRDGCRENQVLNIGKTDKKAAAAVPVLPQKPFKRDRPA 608 >gi|326804584|ref|YP_004327455.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella phage Vi01] gi|301795234|emb|CBW37952.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Salmonella phage Vi01] Length = 758 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 178/785 (22%), Positives = 320/785 (40%), Gaps = 77/785 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + I+ DG+ + F+ ++L ++E AC GL+ VS V + + D + ++ +I Sbjct: 1 MINIIKRDGSSVPFDIEKLHTVLERACEGLEGVSVSEVEAASKIQFTDNMKTERIQDIII 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TLI E PNY V AR LR+ V + F + I++ Sbjct: 61 QAAATLISVEKPNYQYVAARLKSYDLRKVVYGRYKPPHLL-----------DIFAKNIKQ 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN----GSRIEMPQ 318 GV R E + L + ++RD F + + L +Y L E PQ Sbjct: 110 GVYDREFLELYTKEEFEELNTVINHKRDKNFTWAAMGQLTQKYLLRDRSADSKVYYETPQ 169 Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 +M +AM L + + +FY S+ F TP + T Q SSC L Sbjct: 170 VMYMAIAMALFSAWDKETRLTMVKKFYEYASTGKFSLPTPIMSGVRTPTRQFSSCVLIKT 229 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I + G+G D +RG+G+ I G++PF+K Sbjct: 230 GDTLDSINATAKSIVDYVSKRAGIGFDVGAIRGIGSPIRKGEMVHTGLVPFIKYLTGALK 289 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 + +QGG R G+ Y+ WH ++ + L+ N G + R ++ I + +R+ Sbjct: 290 SCSQGGIRGGSATCYIPIWHYQFDDVVVLKNNRGLEENRERRIDYGIQINRVMFERLVNK 349 Query: 497 AGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 LF P + D+++ + +F Y+N + AD G ++ +K++A +++ +L Sbjct: 350 QPLYLFDPKDNRDMYEAFFADVDKFRTLYDNMVKAADAGLVR-AKKMNAEEVFQMLLDQR 408 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---H 610 +TG +I F D N SP ++ ++SSNLC EI L + + G I L Sbjct: 409 SDTGRIYIAFVDHMNQYSPF-NLDTIYSSNLCLEIALPTREFQQYDDEEGRIALCTLASF 467 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D ++ V LD +++ + +A+ + +R +G+G++ Sbjct: 468 NLTAFEDPTEMEDVAYVLVSALDMLLEYQDYPARQARLAVEEYRPLGIGVVNVAHFFAKN 527 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 Y SP +E+ D+ M + F+ + AS LA + GA K ++ G D L Sbjct: 528 FTGYGSPVGLELLDKWMAHLHFYLVKASNRLAMKFGACK--KETIHRSGKITADLQPLPL 585 Query: 731 E--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + + L WD LK ++ G+RN+ +AIAPT + + + + I+P Sbjct: 586 DILPNGKKPEGMAYGLDWDGLKDSLRCHGIRNATLLAIAPTESSSQVLNATNGIEPPKGL 645 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + +K + G + + + + L ++ Sbjct: 646 ISIKGSKDGVYKQIVPDV--------------------------------ETLGPLYDLK 673 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-----------EPSGKKLDFIYRQAWLMGL 897 + + + +++A+ Q+W+DQ+ S+N + D + + Y W G Sbjct: 674 WNLSCIDYLKTAAVAQRWVDQSISVNTHYDPEKFPDGKIPRSLMMQDILSFYM--W--GG 729 Query: 898 KTTYY 902 KT YY Sbjct: 730 KTLYY 734 Score = 41.4 bits (95), Expect = 0.79, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 33/103 (32%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 + +IKR+G FD K+ + +A S+ + + + + K Sbjct: 2 INIIKRDGSSVPFDIEKLHTVLERA----CEGLEGVSVSEVEAASKI------QFTDNMK 51 Query: 89 SALIVHIEDIQDQ----------VECSLMQSGHHKIT---REY 118 + E IQD VE + + + Y Sbjct: 52 T------ERIQDIIIQAAATLISVEK----PNYQYVAARLKSY 84 >gi|323487826|ref|ZP_08093084.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus donghaensis MPA1U2] gi|323398560|gb|EGA91348.1| ribonucleotide-diphosphate reductase subunit alpha [Planococcus donghaensis MPA1U2] Length = 761 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 229/806 (28%), Positives = 366/806 (45%), Gaps = 142/806 (17%) Query: 200 TALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 +L+++ + +P++ V A L ++ + ++ + E + + Sbjct: 46 QSLLYALNHITMDQPDWTYVAAELYASDLYKKA-----AEHREYSASEKYGDFYKLVHEL 100 Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQ 318 + G+ ++ L S ++ L +++ ERD F Y+GL +L DRY G E+PQ Sbjct: 101 TQVGIYSKELLFSYSQEEITELGQEIEPERDLLFNYIGLFLLADRYLAKDYEGRLFELPQ 160 Query: 319 AFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 F+ +AM L E ++ + E Y +S + +TPTL N+G QLSSCF+ TV Sbjct: 161 ERFLVIAMTLMQNEPKEQRLELVKEAYWAMSHLYMTVATPTLSNAGKSFGQLSSCFIDTV 220 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L GI+ + A L+K GG+G + VR LG+ I S GV+P++++ NDTAV Sbjct: 221 DDSLDGIYLNNWDIARLSKDGGGIGIYYGKVRALGSDIKKFKDNSSGVVPWIRLLNDTAV 280 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEE-FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +V+Q G+R+GAV YL+ +H D+ FLDL+ N GD+RR+ HD+ T IPDLFM+R+ + Sbjct: 281 SVDQLGQRQGAVAIYLDVFHKDIMNGFLDLKTNNGDERRKAHDIFTGVSIPDLFMERLQE 340 Query: 496 N-------AGWTLFSPDEVS-------------DLHDLYGKEFEIAYENYERQADRGEIK 535 W F P +V L D Y ++ + + ++A + Sbjct: 341 KDENGRSIGEWHTFCPHQVKRVMGWKDANGNALGLEDFYDEKDTKYFSDKYQEAVDHLLL 400 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-----VGVVHSSNLCTEITL 590 + A+ + +++ ETG P++ ++D N ++P +H + ++ SNLCTEI Sbjct: 401 PRKTYRAMEIMARIMVSQLETGTPYMFYRDEVNRQNPNKHTRGRGLTSIYCSNLCTEIMQ 460 Query: 591 NSS--------------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 N S + VCNL SINL + L + R Sbjct: 461 NMSATTIVKEYTDEDGNLVMIRKPGDFVVCNLSSINLPRAVKSGV-----LERLVPIQTR 515 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNVID+N ++ +A+ +N +RAIGLG G+ L L I + S +AVE AD+ E I Sbjct: 516 MLDNVIDLNTISVGQAEVTNKKYRAIGLGTFGWHHLLALEGIHWESEKAVEFADKLYEEI 575 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 ++ I AS++LA+E+GA+S F GS W G + + W++L+ Sbjct: 576 AYQTIRASMQLAEEKGAFSQFSGSEWHTG--------------EYFERRNYTSERWNDLQ 621 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++V T G+RN MA+AP ++ A I G + IDP Y Y + + F V Sbjct: 622 QQVATTGVRNGWMMAVAPNSSTAKIGGSTDGIDPLYAVEYAEEKKNFKFKVTAP------ 675 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQ 869 + + + +D W I + RQ+ IDQ Sbjct: 676 -------------------------DLDHHTYDFYRRSRHVLDQKWSIRQNAARQRHIDQ 710 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 + S N Y+ K+L ++ +AW LKTTYY+RS S +E Sbjct: 711 SISFNFYVPHTIKAKELLDLHLEAWKQNLKTTYYVRSTSQAEIE---------------- 754 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 ECE CQ Sbjct: 755 --------------------ECEACQ 760 >gi|73748195|ref|YP_307434.1| ribonucleotide-diphosphate reductase subunit alpha [Dehalococcoides sp. CBDB1] gi|73659911|emb|CAI82518.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] Length = 761 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 180/660 (27%), Positives = 284/660 (43%), Gaps = 85/660 (12%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFY 343 + +L RY G E + F RVA +A+ E R EF+ Sbjct: 20 LKLTDNAMCVLERRYLKKDKQGKTTETVEDMFRRVARTIAMGELIYNPKADVRSREDEFF 79 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 NL++ F+ ++PTL N+G QLS+CF+ V D + IF A++ AM+ K GG G Sbjct: 80 NLMTRLEFLPNSPTLMNAGRELGQLSACFVLPVDDSIESIFDAVKHTAMIHKSGGGTGFS 139 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R + T G + G + F++ + + QGG R+GA A L H D+ +F+ Sbjct: 140 FSRLRPEQDRVGTTGGVASGPVSFMRAFDVATDVIKQGGTRRGANMAILSIDHPDIMKFV 199 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D + N + I D FM+ V + L +P Sbjct: 200 ----HAKDKAGVLTNFNLSVAITDKFMQAVKDGVDYDLLNPH------------------ 237 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V ++A ++ K++ M ++TG P I F D N +P +G + S+N Sbjct: 238 ---------NGEVVSSLNASEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTN 288 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL N DY KL+ I++AVR LDNVID+N Sbjct: 289 PCGEQPLLPY----ESCNLGSINLSRMVTVSGGQNTVDYKKLSRVIKSAVRFLDNVIDVN 344 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + R IGLG+MGF L L +PY S ++++A+E M F++ A S Sbjct: 345 KFPLPQIDEMTKKSRKIGLGVMGFADMLLELGVPYNSENSIKLAEEIMCFVNDEAHKFSS 404 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA ERG + +++GS++++ P MR Sbjct: 405 ELAVERGVFPAYRGSIYEKSGRP-----------------------------------MR 429 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 N++C IAPT T++ I G S I+P + + ++ + G VN + K+ + E Sbjct: 430 NASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILDGTKMIEVNPYFERAAKEGGYYSE 489 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 +I L G+ + +P D K + TA +I P W + + QK D A S + Sbjct: 490 ELIKSLAE--GAHLDEVDVPQDAKDLFVTAHQIVPEWHVRIQAAFQKCTDNAVSKTVNFS 547 Query: 879 EPSGK-KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 +G+ + +Y+ A LK R S ST K + +PN Sbjct: 548 RDAGECDVAEVYKMAHARNLKGITIYRDGSREDQPMSTGKAENKIETPAVAVNPNLMPRK 607 >gi|113951999|gb|ABI48936.1| NrdA [Enterobacteria phage T6] Length = 754 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 189/782 (24%), Positives = 319/782 (40%), Gaps = 64/782 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + EG Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LRSRSA 908 + KW+ Q+ S N Y D + + W G+K YY R S Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735 Query: 909 TS 910 T Sbjct: 736 TD 737 >gi|34419510|ref|NP_899523.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio phage KVP40] gi|34333191|gb|AAQ64346.1| aerobic ribonucleoside diphosphate reductase large subunit [Vibrio phage KVP40] Length = 741 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 195/783 (24%), Positives = 317/783 (40%), Gaps = 76/783 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G F +L ++ +AC + +L+ + DG++ D++ A I Sbjct: 1 MLVVKSSGITEEFEESKLMRVLSDACKN-TTIDPHQLLARVKAQLSDGMTSKDIQKAAIK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I +EP+Y V AR + LR++V P + + R Sbjct: 60 IAADSISVEEPDYQYVAARLAMYGLRKDVYGQFDPIP-----------FKQLIERNTAIE 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFF 321 V + E D +L YL + +K+ERDF F Y G+ ++Y G+ E PQ + Sbjct: 109 VYDSEILEKWSDSELEYLESQVKHERDFDFAYAGVMQFKEKYLCKNRGTGAIYETPQYAY 168 Query: 322 MRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M +AM L +E + K ++FYN +S+ TP + T Q SSC D L Sbjct: 169 MLIAMCLHQEEKYDRLKHVIDFYNAVSTQKLSLPTPIMAGVRTPTRQFSSCVKIESGDSL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + G+G + +R G+ + + GVIPF K + +Q Sbjct: 229 RSINKVSEAIVDYISKRAGIGVNGGAIRAEGSVVRAGEIRHTGVIPFWKHFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA WH++VE+ L L+ N G + R ++ + I L M+R+ N T Sbjct: 289 GGVRGGAATLTYPIWHLEVEKLLVLKNNKGVEENRIRHLDYSVSINRLMMQRLVNNEYIT 348 Query: 501 LFSPDE----VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSPDE + + +EFE Y E + ++I A L+ T Sbjct: 349 LFSPDERHGALYGEYHTNPEEFERLYLELEADPKVRK----KRIKATELFSIFGQERSST 404 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 G + F D N +SP ++ + SNLC EI L + T+ + L A+ Sbjct: 405 GRIYPIFVDNLNAQSP--YIEAIKQSNLCMEIALPTYPLGTSYEEIALCTLAAYNLGAIE 462 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 + A +R LDN++D + +E A+K RA+G+G+ F L + Y S Sbjct: 463 SPSEFARLAPIVIRALDNLLDYQDYPVEAAEK-AKYRRALGIGITNFAYFLAKNFVGYDS 521 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 + E ME +S++ I AS+ LA+ERGA + + W +G PID + Sbjct: 522 SAKY-LVHEWMEAMSYYNIQASMMLAKERGANKWHRKTRWAKGQLPIDWYNKNVDK---- 576 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 + L W+ L+ V GMRN A P + + I + I+P + K + Sbjct: 577 LVKPNYNLDWEALRADVIRYGMRNDTTSAFMPCESSSQISNSTNGIEPPRGLVSTKQSKD 636 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI---DP 853 G F V + D LK + A+++ D Sbjct: 637 GVFNQVVPEV--------------------------------DLLKDEYGLAWKVCEKDN 664 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LR 904 + + QK++DQ+ S N Y D + +++ G+KT YY R Sbjct: 665 FGYLTLVAIMQKFVDQSISANQYYDPSKFPNGKIPMERIFEELAFCSHYGIKTLYYSNTR 724 Query: 905 SRS 907 + Sbjct: 725 DGA 727 >gi|332184135|gb|AEE26389.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Francisella cf. novicida 3523] Length = 590 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 192/690 (27%), Positives = 286/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQNYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FMK V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMKAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S IR + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIRDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S +A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQLHRVPFESQKAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|73988081|ref|XP_862175.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subunit (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) isoform 3 [Canis familiaris] Length = 491 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 186/505 (36%), Positives = 285/505 (56%), Gaps = 21/505 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG ++ +++ C GL V + + + +Y G++ +L+T Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ TL K P+YA + AR + L +E +K M+ LY Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKET--------KKVFSDVMEDLYNYINPHNGRH 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 ++ + L + + Y+RDF++ Y G + L Y L ING E PQ M Sbjct: 113 SPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ E A+E YNLLS F ++PTLFN+GT PQLSSCFL ++ DD + Sbjct: 173 RVSVGIH---EEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L++ A+++K +GG+G + +R G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH+D+ EFLDL+KNTG + +R D+ A WIPDLFMKRV N W+ Sbjct: 290 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 L P+E L +++G+EFE YE+YE+Q +V + + A LW ++ ETG P+ Sbjct: 350 LMCPNECPGLDEVWGEEFEKLYESYEKQ-----GRVRKVVKAQQLWYAIIESQTETGTPY 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYD 619 + +KD CN +S QQ++G + SNLCTEI +S +E AVCNL S+ L + + + +D+ Sbjct: 405 MLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTSEHTYDFK 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIE 644 KLA + VR L+ +IDIN + + Sbjct: 465 KLAEVTKVIVRNLNKIIDINYYPVP 489 >gi|299780592|gb|ADJ39954.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage T4T] Length = 754 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 188/782 (24%), Positives = 318/782 (40%), Gaps = 64/782 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + G Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNAG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LRSRSA 908 + KW+ Q+ S N Y D + + W G+K YY R S Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735 Query: 909 TS 910 T Sbjct: 736 TD 737 >gi|225619346|ref|YP_002720572.1| ribonucleotide-diphosphate reductase subunit alpha [Brachyspira hyodysenteriae WA1] gi|225214165|gb|ACN82899.1| ribonucleotide-diphosphate reductase alpha subunit [Brachyspira hyodysenteriae WA1] Length = 773 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 213/810 (26%), Positives = 361/810 (44%), Gaps = 93/810 (11%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSS 206 I+ DG FN ++L +++ A G ++ + +L + D + L LI ++ Sbjct: 12 IIKRDGREEPFNEEKLRKVIDWATEG-KEAFTNQLLEGLNIKINDKMKIEVLYDELINTA 70 Query: 207 RTLIEK-EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +I P Y + + L K+ +E + + I+ + Sbjct: 71 VNMISPLYPMYDTIAEKLYLMKIYKETCG--------LKKIGSYPHIKNFLKKGIKYKIY 122 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 + + + D +L + + + RD F Y GL I Y +Y +I ++E+PQ +M A Sbjct: 123 DKDIIQLFTDKELDKINSMIDPNRDLLFTYKGLAIFYKKYCKNIGNKKLELPQITYMVAA 182 Query: 326 MGLALKETE--------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 M + + K Y++LS +TP + NS T QL+SC Sbjct: 183 MFSFYDDYYKGENKDKLEISKSERLKYIKRTYDMLSRHEVTFATPRIANSMTIKAQLASC 242 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 L T DD + + A+ +K+SGG+ D + +R G+ I G+S G IPF+K Sbjct: 243 ILNTPADDTWSLNQTDGNMALYSKFSGGIAYDASYIRASGSTIQTNRGRSDGPIPFIKRV 302 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 T + NQGG RKGA WH+DV + + L+ G + R + + I ++F + Sbjct: 303 EQTISSFNQGGVRKGACVVTFPWWHLDVLDLIMLKDAGGTEDTRARKLVYSIRISNIFRE 362 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV ++ TLF P E L++ YG++F +AY YE ++ + K+ A L ++L Sbjct: 363 RVNKDGYVTLFDPKETPLLNEEYGEKFNVAYIYYESKSSIRKKKIK----AKDLLFQILK 418 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE---------------- 595 + ETG+ ++TF D N V +SNLC EI + S Sbjct: 419 VRQETGNLYLTFVDNINE--QNMVNRFVGASNLCQEIVIPSYPSKLIKEKYVINEDGEYE 476 Query: 596 --------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 E +CNL S+NL + F +K S T +R DN+ID + +++ + Sbjct: 477 IIQRKKSGEIGICNLVSVNL---MSWVNFSPEKKKSFCYTLLRGCDNIIDTQFYPVKEGE 533 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 +N +R IG+G++ + + L I Y EA+E ++ + + +H AS LA+ERG Sbjct: 534 IANKKNRPIGIGVINYANLLASNKIKYTDKEALEFTNKVFDDLYYHIYEASNILARERGP 593 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 Y +F S W +G+ P L ++ L + + WD+L + +K G+R S AIA Sbjct: 594 YKTFNESKWKEGLTPFHISLLNNNKKNNLNV-SVDKEKWDKLAENIKNNGVRFSFHGAIA 652 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PTAT ++SI+P +++ + LV +K+ Sbjct: 653 PTATSGKSVSATESIEPIVDLFFIE-----EGIQTLPSLVPNIKKN-------------- 693 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886 ++ + + I +IE A+ RQ++IDQ+QSLNLY +P S K+L Sbjct: 694 --------------REYYERCWNIPAKTIIELAAVRQRYIDQSQSLNLYYVKPDSAKELW 739 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + A +GLKT YY+++ ++ E + Sbjct: 740 DDIQYAMDLGLKTLYYMKT-PKSNFELEEV 768 >gi|291287794|ref|YP_003504610.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Denitrovibrio acetiphilus DSM 12809] gi|290884954|gb|ADD68654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Denitrovibrio acetiphilus DSM 12809] Length = 761 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 172/668 (25%), Positives = 283/668 (42%), Gaps = 82/668 (12%) Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK 337 + L D + +L RY +G +E P F RVA+ +A + +K Sbjct: 4 KEIEKALSQTPD--LTKNAITVLEKRYLKRDISGKPVEKPIDMFRRVALNIAEADKNYDK 61 Query: 338 RAV------EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENA 391 A FY +++ F+ ++PTL N+G QL++CF+ V D L IF A++ A Sbjct: 62 DADILSTATAFYEQMAALKFLPNSPTLMNAGRELQQLAACFVLPVDDSLEAIFEAVKNTA 121 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 ++ K GG G ++ +R + T G S G + F+ V + + QGG R+GA Sbjct: 122 LIHKSGGGTGFSFSRLRPKDDVVKTTKGVSSGPVSFMTVFDAATETIKQGGTRRGANMGI 181 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ EF+ +D+ + + N + I + FM+ V + + L++P Sbjct: 182 LRVDHPDIMEFI----YAKEDKTKLTNFNLSVGITEKFMQAVLNDTDYDLYNPKT----- 232 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 K K+ A ++ M+ + +E G P I + D N + Sbjct: 233 ----------------------GKTAGKLKAKEVFDTMVQLAWEGGDPGIVYLDRINAEN 270 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 P G + S+N C E L CNLGSINL + + + D++ L TI AV Sbjct: 271 PTPKEGDIESTNPCGEQPLLPY----ESCNLGSINLGKYVKDGKIDWEDLEKTIEVAVHF 326 Query: 632 LDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 LDNVID+N + I++ +R IGLGLMG+ L +L IPY + EA ++A++ M+FI Sbjct: 327 LDNVIDMNKYPIQQINDQTKRNRKIGLGLMGWADMLAMLAIPYNTDEATDLAEKVMQFIR 386 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 S LA RG + SFK S++ + F Sbjct: 387 DKGREKSSALAVIRGDFPSFKDSIYPKMGFKN---------------------------- 418 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNEL 810 MRN+ IAPT TI+ I S I+P + + + M + V+ + Sbjct: 419 ------MRNATITTIAPTGTISIIGSCSSGIEPYFAIAFYRQVMDNNKLVEVSPVFKDIA 472 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K+ + ++ + G+ + +P+ ++ T+ EI P W + + QK+ D A Sbjct: 473 KREGFLSDELLEKVAET-GTAHGLSMVPEKWQEAFVTSHEITPFWHTKMQAAFQKYTDNA 531 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT-SVEKSTLKGVDGKLNAVPV 928 S + +E + + + Y ++ +G K T R S T V K + + A Sbjct: 532 VSKTVNFPNEATIEDVKKTYLLSYNLGCKGTTIYRDGSRTGQVLNVGTKEKEAQPEATAE 591 Query: 929 TDPNSSTH 936 P Sbjct: 592 FTPKPRPK 599 >gi|254374387|ref|ZP_04989869.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548] gi|151572107|gb|EDN37761.1| hypothetical protein FTDG_00554 [Francisella novicida GA99-3548] Length = 590 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSNVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|320161749|ref|YP_004174974.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1] gi|319995603|dbj|BAJ64374.1| ribonucleotide reductase [Anaerolinea thermophila UNI-1] Length = 868 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 170/671 (25%), Positives = 297/671 (44%), Gaps = 40/671 (5%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-----EKRAVEFYNL 345 Q+L RY + G+ E F RVA +A E RA EFY L Sbjct: 28 ELTENARQVLIRRYVRRNDDGTPAESVDEMFWRVAYNIAKVEVSFGNPDVMTRAREFYIL 87 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGGLG 401 L+S F ++PT +GT QL++CF+ + DD+ GIF L++ A++ + GG G Sbjct: 88 LTSKKFFPNSPTFTGAGTPLGQLAACFVLPIVDDMGRDSMGIFQTLRDAALIQQTGGGNG 147 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R G + ++G++ G + FL+V + + QGG R+GA L H D+EE Sbjct: 148 FSFSRLRPKGTVVKSSSGQATGPVGFLRVYDHAFGEIAQGGTRRGANMGVLRVDHPDIEE 207 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ + D + N + I D FM+ V ++A W L PD + + E A Sbjct: 208 FITCKT----DENAITNFNISVGITDAFMRAVKEDAEWELRFPDVTDPRYRTFRGTLEQA 263 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 + + I+ ++K+ A L+ K++ G P + F D N +P H+ + + Sbjct: 264 ------EQEGIPIRTYKKVRARDLFNKIVKQAHHNGEPGVLFLDAANRSNPVPHLYQLEA 317 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINC 640 +N C E L C LGS+NL H N D++ L ++ + LD+V++ N Sbjct: 318 TNPCGEQYLGPYEN----CCLGSVNLAQHLGDNGTVDWEGLRQSVVLSTIFLDDVVEANA 373 Query: 641 H--TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + +++ R IGLG+MG ++ I Y SPE E A + MEFI +HA+ S Sbjct: 374 YVPAVPQLREAAMRARRIGLGIMGLADLMYHCGIRYGSPEGQEFAAQVMEFIRYHAMQTS 433 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT-SRLPWDELKKRVKTIG 757 +ELAQ+RGA+ + GS++D P + + + + WD + + ++ G Sbjct: 434 IELAQQRGAFPAIHGSIYD----PENLKWAPPQSIVPYTHDYGRPPIDWDIITEGIRKHG 489 Query: 758 MRNSNCMAIAPTATIANICGVSQ-SIDPSYQNLYVKSN----MSGDFTVVNSFLVNELKQ 812 +RN+ IAPT TIA + G +P + Y++ + + + Sbjct: 490 IRNAAQTTIAPTGTIATVAGCEGYGCEPVFALAYIRHVNDNGKDLQLIYASPAFEKAIAR 549 Query: 813 RDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + E L +G+ +I+ +P+ ++ + + +I + + Q ++D + Sbjct: 550 AGIEAEKRQEILEQIMREGTCQHIKDLPEAIRNVFVVSADITAEEHVRMQAALQAFVDNS 609 Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 S + E + + + Y AW +G K + S V TLK + K Sbjct: 610 LSKTINFPEGATEEDVATAYMLAWELGCKGITVYVTGSREKVVLETLKTAEKKKGETDEK 669 Query: 930 DPNSSTHSLGI 940 + + Sbjct: 670 EEVEKSPVPQP 680 >gi|310722638|ref|YP_003969461.1| aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage phiAS5] gi|306021481|gb|ADM80015.1| aerobic ribonucleoside diphosphate reductase large subunit [Aeromonas phage phiAS5] Length = 744 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 191/782 (24%), Positives = 310/782 (39%), Gaps = 84/782 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + G F +L I+ A G +S K +L ++ +G+S ++ I Sbjct: 1 MLVRKSSGITEEFTVGKLFKILSFATEG-TRISPKEILDGIMPSITEGMSTKRIQEIAIK 59 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I E +Y V AR + LR++V K + + +G Sbjct: 60 FAADRISIEQSDYQYVAARLQMYALRKQVYNQFDPIHLK-----------PHVMDLVMDG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321 L D + L +K++RDF Y G+ ++Y G E PQ + Sbjct: 109 KYDPELCSKWTDEEFEELNAYIKHDRDFNLAYAGVMQFKEKYLAKDRSTGEVFETPQMLY 168 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M VAM L +E ++ ++ FY++ S TP L T Q SSC D+L Sbjct: 169 MLVAMCLHQEEKTDRLQKVKNFYDVTSLGKLSLPTPILAGVRTPTRQFSSCVKIECGDEL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R G+ I + G+IPF K + +Q Sbjct: 229 DSINATASSIVDYISKRAGIGINGGAIRAEGSRIRSGEVRHTGIIPFWKYFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA Y WH++VE+ L L+ N G + R ++ I L ++R+ + T Sbjct: 289 GGVRGGAATLYYPMWHLEVEKILVLKNNKGVEENRIRHLDYGIQINKLMLERLKNDDYIT 348 Query: 501 LFSPD----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSPD E+ DL+ +F YE E + + ++I A L+ T Sbjct: 349 LFSPDVQKGELYDLYYSDPVKFRELYEMLENEPFL----IKKRIKASELFNLFAQERSGT 404 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------ETAVCNLGSINLLAH 610 G + F D N +P + + SNLC EI L + E A+C L + NL A Sbjct: 405 GRIYPMFIDNVNSATP--YKEPIRQSNLCIEIALPTYPVHRDGTGEIALCTLAAYNLGAI 462 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 Y+ + R AVR LDN++D + + +A + RA+G+G+ F L Sbjct: 463 EG-----YNDFLNVARAAVRALDNLLDYQEYPVVQAL-AAKKRRALGIGVTNFAYFLAKN 516 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y+ A ++ +ME + F I AS+ELA+ERGA + W G+ PID Sbjct: 517 FVKYSDGSANKLVHRTMEMMQFANIVASMELAKERGASEWHHKTKWADGLLPIDWYNKNV 576 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + ++ W+ L+ +K GMRN A P + + I + I+P + Sbjct: 577 DSI----VPNDLKMDWEWLRGEIKKYGMRNDTLSAFMPCESSSQITNSTNGIEPPRGLVS 632 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K + G F LV E++ + TA+ Sbjct: 633 TKQSKDGVFNQ----LVPEVEMLG----------------------------SEYETAWA 660 Query: 851 ID---PMWLIESASRRQKWIDQAQSLNL-YLDEP------SGKKLDFIYRQAWLMGLKTT 900 + ++ + QK++DQ S N Y+ K + +A G+K+ Sbjct: 661 MAKRGMKGYLDIVAIMQKFVDQMISANTYYVPSIYPGDKLPMKVVLKDMSRAQKYGVKSL 720 Query: 901 YY 902 YY Sbjct: 721 YY 722 >gi|238695117|ref|YP_002922311.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE] gi|220029253|gb|ACL78188.1| aerobic NDP reductase large subunit [Enterobacteria phage JSE] Length = 747 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 187/785 (23%), Positives = 319/785 (40%), Gaps = 78/785 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ G + F +++ I+E A G +V + + +G+S +D++ LI Sbjct: 4 NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + I E P+Y V + + LR+ V + + R I G Sbjct: 63 AADNITVETPDYQYVASNLAMFALRKSVYGQFQPID-----------FYSHIERNIATGK 111 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322 R + + ++ YL + ++ DF Y G L ++Y IE PQ +M Sbjct: 112 YDREILQKYSHEEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171 Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 + M L +E + + ++FYN +++ TP + T Q SSC + D L Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI G+G + +R G+ I + GVIPF K + +QG Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R GA Y WH++ E + L+ N G + R ++ I +L ++R + TL Sbjct: 292 GIRGGAATLYYPIWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351 Query: 502 FSPDEVS----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 FSPD DL+ + F YE E+ + + + A L+ + F TG Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR----VKAEDLFLAVAIERFNTG 407 Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHF 611 + TF D N ++V + SNLC EI L + E ++C L + L Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNF- 466 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + + +++ VR LDN++D + +E+A + R++G+G+ F S L Sbjct: 467 --DIENMEEVERIAMVMVRALDNLLDYQDYPVEQAL-TAKKRRSLGVGVTNFASYLADNF 523 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y +A E ++ E + + I ASV LA+E+GA + + +G PID + Sbjct: 524 FTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPIDWYKKTVD 581 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ + W+EL++ +K G+RNS A+ P + + + + I+P + V Sbjct: 582 E----LVDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSV 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K + G F V + N DL + + +K + K + T Sbjct: 638 KGSKEGQFNQVIPNVENNADVIDL----LWTLIKKGN--------------KPYLT---- 675 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYY-- 902 A+ QK++DQA S N D + K + A GLKT YY Sbjct: 676 -------LAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYAN 728 Query: 903 LRSRS 907 +R + Sbjct: 729 VRDGA 733 >gi|111073617|emb|CAL29480.1| ribonucleoside-diphosphate reductase alpha chain [Wolbachia endosymbiont of Onchocerca volvulus] Length = 609 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 186/680 (27%), Positives = 298/680 (43%), Gaps = 101/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + +E++ G +L DRY + E Q F+R+A + + A Y+ Sbjct: 21 INHEKNVKLTSFGKAVLLDRYLIEN-----ESYQDLFIRIASYYSDNKE----HAQRLYD 71 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM STP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 72 YISNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 132 GNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 190 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ A + D FM+ V ++ W L SP Sbjct: 191 IRKPTGGDPNRKALNIHHAVIVNDEFMQAVERDLEWDLISPHSN---------------- 234 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV + A +W K+L ETG P+I F + N P+ + + Sbjct: 235 -----------KVISTVKARDIWVKILIARVETGEPYIIFLNAINNNKPESYKKLNLDIK 283 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + ++ I +R LDNV + Sbjct: 284 MSNLCSEITLTTGYDHLNKPRTAVCCLSSVNLEYYEEWKDSEFFIEDIMRFLDNVFEDFI 343 Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + S R+IGLG+MGF S L +P+ S A + + + A Sbjct: 344 NKAPNEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKRIFKHLREQADI 403 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA+E+GA +D+ + R Sbjct: 404 ISKKLAEEKGAC--------------LDAKEINLMER----------------------- 426 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 ++ +AIAPTA+I+ I G S I+P N++ + ++G F V N FL L +++ Sbjct: 427 ---FTHKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLLAKKNQ 483 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + + K TA+E+D W+IE AS R +I Q+QS+NL Sbjct: 484 DNDKVWSSISTNEGSVQHLDFLNEHEKLTFKTAYELDQRWIIEHASDRTPYICQSQSVNL 543 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW LK+ YY RS S +K + + Sbjct: 544 FLPPNIHKRYLHKIHMLAWKKNLKSLYYCRSLSIQRADKVSHDISEK------------- 590 Query: 935 THSLGIPSSCTSDTECEVCQ 954 + + + EC CQ Sbjct: 591 -NEILHQKTDIDYDECLSCQ 609 >gi|33620590|ref|NP_891805.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49] gi|33348057|gb|AAQ15458.1| aerobic NDP reductase large subunit [Enterobacteria phage RB49] Length = 747 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 188/785 (23%), Positives = 320/785 (40%), Gaps = 78/785 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ G + F +++ I+E A G +V + + +G+S +D++ LI Sbjct: 4 NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + I E P+Y V + + LR+ V + + R I G Sbjct: 63 AADNITVETPDYQYVASNLAMFALRKSVYGQFQPID-----------FYSHIERNIATGK 111 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322 R + + ++ YL + ++ DF Y G L ++Y IE PQ +M Sbjct: 112 YDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171 Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 + M L +E + + ++FYN +++ TP + T Q SSC + D L Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI G+G + +R G+ I + GVIPF K + +QG Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R GA Y WH++ E + L+ N G + R ++ I +L ++R + TL Sbjct: 292 GIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351 Query: 502 FSPDEVS----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 FSPD DL+ + F YE E+ + + + A L+ + F TG Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR----VKAEDLFLAVAIERFNTG 407 Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHF 611 + TF D N ++V + SNLC EI L + E ++C L + L Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNF- 466 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + + +++ VR LDN++D + +E+A + R++G+G+ F S L Sbjct: 467 --DIENMEEVERIAMVMVRALDNLLDYQDYPVEQAL-TAKKRRSLGVGVTNFASYLADNF 523 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y +A E ++ E + + I ASV+LA+E+GA + + +G PID + Sbjct: 524 FTYE--DANEFTHKTFERLQYALIKASVQLAKEKGACELMHETRYGRGELPIDWYKKTVD 581 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ + W+EL+K +K G+RNS A+ P + + + + I+P + V Sbjct: 582 E----LVDPVYEMDWEELRKDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSV 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K + G F V + N DL + + +K + K + T Sbjct: 638 KGSKEGQFNQVIPNVENNADVIDL----LWTLIKKGN--------------KPYLT---- 675 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYY-- 902 A+ QK++DQA S N D + K + A GLKT YY Sbjct: 676 -------LAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYAN 728 Query: 903 LRSRS 907 +R + Sbjct: 729 VRDGA 733 >gi|328954504|ref|YP_004371838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobacca acetoxidans DSM 11109] gi|328454828|gb|AEB10657.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobacca acetoxidans DSM 11109] Length = 738 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 173/663 (26%), Positives = 284/663 (42%), Gaps = 79/663 (11%) Query: 288 ERDFAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVE----- 341 D + +L RY + G E P F+RVA +A + + A Sbjct: 11 SEDIFLTPNAVTVLKKRYLKKDDHGDVCEQPVDMFLRVAKTIAEVDRCYDPEADIEETTR 70 Query: 342 -FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 FY+L++S FM ++PTL N+G QLS+CF+ V DD+ IF A++ A++ K GG Sbjct: 71 CFYHLMASRSFMPNSPTLMNAGRELGQLSACFVLPVDDDISSIFDAIKNTALIHKSGGGT 130 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R + T G + G I F+ + + + QGG R+GA A L H D+E Sbjct: 131 GFSFSRIRPENDRVLSTKGVASGPISFMNIFDVATETIKQGGTRRGANMAILRVDHPDIE 190 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 +F+ + D+ +++ A + D FM+ V + L +P Sbjct: 191 KFITCK--NQTDKLTNFNISVA--VTDAFMQAVINGEDFALLNPRTQQ------------ 234 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 R + A L+ ++ + TG P + F D N +P HVG++ Sbjct: 235 ---------------PVRSVKAAVLFDLIVQSAWSTGEPGLIFLDQVNRGNPIPHVGLIE 279 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 S+N C E L CNLGSINL N ++ L + +V LDNVID N Sbjct: 280 STNPCGEQPLLPY----ESCNLGSINLAQMVKNGAVNFATLKEVVWASVHFLDNVIDANR 335 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + +++ +R IGLG+MGF L L I Y S AV++A+E M FI + +AS E Sbjct: 336 FPLPQIEEATMKNRKIGLGVMGFADMLLYLGISYNSEAAVKVAEEVMSFIQRESKAASAE 395 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA++RG + +F GS++D G Sbjct: 396 LAEKRGNFPNFPGSIYDTGNGKGRMRNATTTTIAPTGTI--------------------- 434 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819 + I G S I+P + +V+ + G + V+ + + ++R ++ Sbjct: 435 ------------SIIAGCSSGIEPLFGISFVRRVLDGAELLEVHPYFEDVARRRGFYNGE 482 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878 ++ + GSI +++ IP D++++ TA +I P W + + QK+ D A S + Sbjct: 483 LMRQIAQT-GSIRDLKEIPKDIRRLFVTAHDITPQWHVRIQAAFQKYTDNAVSKTVNFPA 541 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 S + + +Y A+ +GLK R RS V + K P P +T Sbjct: 542 SASPEDVRQVYLLAYELGLKGITIYRDRSRDQQVLSFGQEKPPEKQYIAPRPRPARTTGV 601 Query: 938 LGI 940 + Sbjct: 602 TEV 604 >gi|332678272|gb|AEE87401.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Francisella cf. novicida Fx1] Length = 590 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|226226348|ref|YP_002760454.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas aurantiaca T-27] gi|226089539|dbj|BAH37984.1| vitamin B12-dependent ribonucleotide reductase [Gemmatimonas aurantiaca T-27] Length = 859 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 171/664 (25%), Positives = 276/664 (41%), Gaps = 71/664 (10%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYN 344 +L RY + G +E P+ F RVA +A + + A EFY Sbjct: 14 LSANARTVLEKRYLVKDKSGKPVEKPEDMFWRVATTVAEADRRYGASDGAVQAIAEEFYF 73 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY----GIFGALQENAMLAKYSGGL 400 L++ F ++PTL N+G QLS+CF+ V D L GI+ L+ A++ + GG Sbjct: 74 LMTQRRFEPNSPTLMNAGRPLGQLSACFVLPVDDALSNGQSGIYDTLRSMALIHQSGGGT 133 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R G+ + T G + G + F+++ + + AV QGG R+GA L H DV Sbjct: 134 GFSFSRLRSRGSMVRSTTGVASGPVSFMQLYDASTDAVKQGGTRRGANMGILRVDHPDVM 193 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF+ + +D + + N + I FM V +A + L P Sbjct: 194 EFIACK----EDLTKITNFNISVGITTKFMDAVKADANYDLVDPVS-------------- 235 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 KV ++ A +W KM+ + TG P + F D N +P H+G Sbjct: 236 -------------KKVTGELRAREVWDKMILGAWRTGEPGVFFIDEANRYNPVPHLGDYE 282 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 ++N C E L + VCNLGS+N+ + +N D++ + I + LDN+ID+N Sbjct: 283 ATNPCGEQPLLAY----DVCNLGSVNVGHYVSNGVVDWEAMRRDIALSTHFLDNIIDVNK 338 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + + + R IGLG+MGF L L IPY S E VE+ + MEF+ S Sbjct: 339 YPLPEIDALSKRIRRIGLGVMGFADMLVRLGIPYDSAEGVEMGRKVMEFLDVEGKKESER 398 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ERGA+ + S+W + T + + R + +RN Sbjct: 399 LARERGAFPEWAQSIWGP--------------------DETCARDANGQRIRPMQL-LRN 437 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 N +APT TI+ I G S ++P + ++++ VN V K + + + Sbjct: 438 CNVTTVAPTGTISIIAGCSSGLEPLFAVAFMRNQAGVMMPDVNEDFVAIAKAEGWYSDEL 497 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + GS+ + +P + + TA I P + I + Q D A S Sbjct: 498 MERIAKT-GSVQHA-EVPAKWQSVFNTANNISPEYHIRMQAAYQLHCDSAISKTTNFGFA 555 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 + + IY A+ M K R S + ST D N + Sbjct: 556 ATVDDVRAIYEMAYEMKCKGVTVYRDGSRDNQVLSTGATQDAAANRESAKAAVNGEAPKV 615 Query: 940 IPSS 943 + Sbjct: 616 DAKA 619 >gi|118497573|ref|YP_898623.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. novicida U112] gi|195536269|ref|ZP_03079276.1| ribonucleotide reductase, barrel domain, putative [Francisella tularensis subsp. novicida FTE] gi|208779371|ref|ZP_03246717.1| ribonucleotide reductase, barrel domain, putative [Francisella novicida FTG] gi|254372934|ref|ZP_04988423.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. novicida GA99-3549] gi|118423479|gb|ABK89869.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella novicida U112] gi|151570661|gb|EDN36315.1| ribonucleoside-diphosphate reductase [Francisella novicida GA99-3549] gi|194372746|gb|EDX27457.1| ribonucleotide reductase, barrel domain, putative [Francisella tularensis subsp. novicida FTE] gi|208745171|gb|EDZ91469.1| ribonucleotide reductase, barrel domain, putative [Francisella novicida FTG] Length = 590 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|270307983|ref|YP_003330041.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] gi|270153875|gb|ACZ61713.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] Length = 599 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 169/647 (26%), Positives = 288/647 (44%), Gaps = 83/647 (12%) Query: 293 FEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345 ++L RY +G IE P+ F RVA +A E + EFY Sbjct: 16 LSTTAKRVLEKRYLKKDADGRVIETPEDMFHRVARVVASAEYKYAPGADISRIEEEFYQA 75 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + F+ ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ Sbjct: 76 MFRLEFLPNSPTLLNAGRQVGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + + G + + + A V QGG R+G A L+ H D+ F+ Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISC 195 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D + + + FM +V + + +P Sbjct: 196 KG----DPNALTNFYISVVVTRDFMTKVRNGEDYDIINPHT------------------- 232 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V ++++A ++ +++ ++TG P + F D N +P +G + + C Sbjct: 233 --------GEVVQRLNAACVFDRIVDQAWKTGDPGLVFIDRINDDNPTPLLGRIKHVSGC 284 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641 E TL CNLGSI+L + DY+KL T++ A+R LDNVID+N Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +K+ +R +GLG+MGF L L+ IPY S EA+ AD+ MEFI + AS +L Sbjct: 341 PTPEIEKATLRNRKVGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASSKL 400 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ RG++ +++GS++D MRN+ Sbjct: 401 AEVRGSFPAYEGSIYDVPGGRP----------------------------------MRNA 426 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 C +IAPT T++ I GVS I+PS+ ++V++ + G+ +N + ++ + + Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARRGGFHSKEL 486 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 L + + +IE IPD LK++ TA I P W I + QK+ D A S + E Sbjct: 487 FEKLVSSN-HLHDIECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDHAVSKTVNFSHE 545 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + ++ A+ GLK R S + T + ++ Sbjct: 546 ATREDMANVFNMAYDKGLKGITVYRDGSRAAQPLCTCESGVKLVDQY 592 >gi|157311535|ref|YP_001469578.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage Phi1] gi|149380739|gb|ABR24744.1| NrdA aerobic NDP reductase large subunit [Enterobacteria phage Phi1] Length = 747 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 188/785 (23%), Positives = 319/785 (40%), Gaps = 78/785 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ G + F +++ I+E A G +V + + +G+S +D++ LI Sbjct: 4 NVVKSSGLTVPFEKEKVMKILEAAAEG-HNVDPYELFDMVEPLLTEGMSTNDIQKVLIKV 62 Query: 206 SRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + I E P+Y V + + LR+ V Y + R I G Sbjct: 63 AADNITVETPDYQYVASNLAMFALRKSVYGQFQPI----------DFYC-HIERNIATGK 111 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322 R + + ++ YL + ++ DF Y G L ++Y IE PQ +M Sbjct: 112 YDREILQKYSREEVEYLEKFIDHKLDFKMTYAGAMQLKEKYLVQDRSTKKIIETPQFAYM 171 Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 + M L +E + + ++FYN +++ TP + T Q SSC + D L Sbjct: 172 LIGMCLHQEETENRLEHVIDFYNAVANKQISLPTPIMAGVRTPTRQFSSCVVIESDDSLQ 231 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI G+G + +R G+ I + GVIPF K + +QG Sbjct: 232 GINETANAIIKYISKRAGIGINAGMIRAEGSKIGHGEVRHTGVIPFWKHFQTAVKSCSQG 291 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R GA Y WH++ E + L+ N G + R ++ I +L ++R + TL Sbjct: 292 GIRGGAATLYYPMWHLEFESLIVLKNNKGVEDNRIRHLDYGVQINNLMVERFLKRDYITL 351 Query: 502 FSPDEVS----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 FSPD DL+ + F YE E+ + + + A L+ + F TG Sbjct: 352 FSPDVAGGLLWDLYFRDEEGFRQLYEKLEKDPSVRKTR----VKAEDLFLAVAIERFNTG 407 Query: 558 HPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNS-----SSEETAVCNLGSINLLAHF 611 + TF D N ++V + SNLC EI L + E ++C L + L Sbjct: 408 RIYPTFTDNMNNHGAFIRNVAPIKQSNLCCEIALPTKPMGRDDSEISLCTLAAYVLGNF- 466 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + + +++ VR LDN++D + +E+A + R++G+G+ F S L Sbjct: 467 --DIENMEEVERIAMVMVRALDNLLDYQDYPVEQAL-TAKKRRSLGVGVTNFASYLADNF 523 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y +A E ++ E + + I ASV LA+E+GA + + +G PID + Sbjct: 524 FTYE--DANEFTHKTFERLQYALIKASVRLAKEKGACELMHETRYGRGELPIDWYKKTVD 581 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ + W+EL++ +K G+RNS A+ P + + + + I+P + V Sbjct: 582 E----LVDPVYEMDWEELREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGIVSV 637 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K + G F V + N DL + + +K + K + T Sbjct: 638 KGSKEGQFNQVIPNVENNADVIDL----LWTLIKKGN--------------KPYLT---- 675 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-------KLDFIYRQAWLMGLKTTYY-- 902 A+ QK++DQA S N D + K + A GLKT YY Sbjct: 676 -------LAAIMQKFVDQAISSNTSYDPSTYKTGKVDIADVLDDMLFAQYYGLKTLYYAN 728 Query: 903 LRSRS 907 +R + Sbjct: 729 VRDGA 733 >gi|330507668|ref|YP_004384096.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta concilii GP-6] gi|328928476|gb|AEB68278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosaeta concilii GP-6] Length = 676 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 184/725 (25%), Positives = 299/725 (41%), Gaps = 87/725 (12%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + A+ + R + +E + L E++ +E + E+Q L Sbjct: 17 TEKIALAISKAFRAVGREEED----APFRLAERVAKEAEERFSRTIPGV--EEIQDLVER 70 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN-GSR 313 V + ++ L D ++L RY L G Sbjct: 71 ALISAGYADVAKAYILYRQKRTEIREAKRYLGVADDLKLSVNAAEVLKKRYLLRDERGDV 130 Query: 314 IEMPQAFFMRVAMGLALKETEK----EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 +E P F RVA ++ E++ E F ++ + F+ ++PTL NS QLS Sbjct: 131 VETPGEMFGRVADHISKAESKYGGDVESYRSLFLQMMRNLEFLPNSPTLMNSRLELGQLS 190 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 +CF+ V D L GIF AL+ A++ + GG G ++ +R + T G + G + F++ Sbjct: 191 ACFVLPVTDSLPGIFDALKNMALIHQSGGGTGFSFSRLRPKDDVVRATGGVASGPVSFMR 250 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + + + QGG+R+GA L H D+ EF++ ++ G + N + D F Sbjct: 251 IFDTATDVIKQGGRRRGANMGILRVDHPDIMEFIEAKERPGFLE----NFNLSVAATDEF 306 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M++ L +P ++ A L + Sbjct: 307 MEKSRGEGEIDLINPRT---------------------------GLAGGRLKAAELLGLI 339 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 T + G P I F D N P G + ++N C E L CNLGSINL Sbjct: 340 ATSAWRGGDPGIIFIDRINAAHPLP--GEIEATNPCGEQPLLPY----ESCNLGSINLSR 393 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+D+LA + AVR LD+VID+N + + +++ + R IGLG+MGF L Sbjct: 394 LVRKGELDWDRLAELVSLAVRFLDDVIDMNRFPLPQIEEATLSRRKIGLGVMGFADMLIQ 453 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 ++I YASP+AV +A++ M FIS HA + S L +ERG++ F S Sbjct: 454 MNISYASPQAVALAEKLMGFISEHARAQSARLGEERGSFPLFDSSR-------------- 499 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +R A MRN+ IAPT TI+ I G S I+P + Sbjct: 500 --LRGWSA--------------------MRNATVTTIAPTGTISIIAGTSSGIEPLFALA 537 Query: 790 YVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 +V+ + G V+ +R ++ + +L GS+ I +P DLK++ TA Sbjct: 538 FVRRVLEGARLLEVSPLFEKMAMERGIYTPDLKVELA-WRGSVQEIAGLPQDLKELFRTA 596 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +I + + QK+ D A S + L E + + +YR A+ +G K R S Sbjct: 597 LDISAQQHVRIQAAFQKYTDNAVSKTVNLPAEATVSDVLQVYRLAYDLGCKGVTVFRYGS 656 Query: 908 ATSVE 912 + V Sbjct: 657 RSQVL 661 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 ++ KR G V F KI+ AI KAF AV + R+ + + E R + Sbjct: 4 RIRKREGRVVEFQTEKIALAISKAFRAVGREEEDAPFRLAERVAKEAE---ERFSRTIPG 60 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLK 146 +E+IQD VE +L+ +G+ + + Y+LYR++R+++R A+ + + + Sbjct: 61 -----VEEIQDLVERALISAGYADVAKAYILYRQKRTEIREAKRYLGVADDLKLSVN 112 >gi|187931832|ref|YP_001891817.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. mediasiatica FSC147] gi|187712741|gb|ACD31038.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 590 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQTVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|89256332|ref|YP_513694.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica LVS] gi|115314780|ref|YP_763503.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica OSU18] gi|156502406|ref|YP_001428471.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010838|ref|ZP_02275769.1| ribonucleoside-diphosphate reductase alpha chain [Francisella tularensis subsp. holarctica FSC200] gi|254367667|ref|ZP_04983688.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. holarctica 257] gi|290952875|ref|ZP_06557496.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica URFT1] gi|295313920|ref|ZP_06804485.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. holarctica URFT1] gi|89144163|emb|CAJ79425.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. holarctica LVS] gi|115129679|gb|ABI82866.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica OSU18] gi|134253478|gb|EBA52572.1| ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. holarctica 257] gi|156253009|gb|ABU61515.1| ribonucleoside-diphosphate reductase alpha chain [Francisella tularensis subsp. holarctica FTNF002-00] Length = 590 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|56707667|ref|YP_169563.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis SCHU S4] gi|110670138|ref|YP_666695.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis FSC198] gi|224456734|ref|ZP_03665207.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis MA00-2987] gi|254370175|ref|ZP_04986181.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|254874480|ref|ZP_05247190.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|56604159|emb|CAG45167.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320471|emb|CAL08550.1| Ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568419|gb|EDN34073.1| ribonucleotide-diphosphate reductase alpha subunit [Francisella tularensis subsp. tularensis FSC033] gi|254840479|gb|EET18915.1| nrdA, ribonucleoside-diphosphate reductase, alpha subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158829|gb|ADA78220.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis NE061598] Length = 590 Score = 386 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAHRIYDAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|78355160|ref|YP_386609.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217565|gb|ABB36914.1| ribonucleoside-diphosphate reductase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 745 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 168/642 (26%), Positives = 290/642 (45%), Gaps = 86/642 (13%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYN 344 +L RY+ +G +E F RVA +A +E + ++ A EFY+ Sbjct: 12 LNQNAEVVLSKRYYRKGPDGEPLEDATGLFWRVASAIAAEEGKYPDSSCRADELAREFYD 71 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L++S+ F+ ++PTL N+GT QL++CF+ V D + IF A++ AM+ K GG G + Sbjct: 72 LMTSWKFLPNSPTLMNAGTDLGQLAACFVLPVGDSIEEIFDAVKHAAMIHKSGGGTGFSF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R + + T G + G + FL++ N + QGG R+GA L H D+ EF+ Sbjct: 132 SRLRPAASRVGSTGGVASGPLSFLRIFNTATEQIKQGGTRRGANMGILRVDHPDILEFIR 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G+ ++ N + + + FMK V + + L +P Sbjct: 192 AKEREGE----FNNFNLSVALTEDFMKAVEKGEEYPLMAPHS------------------ 229 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + ++A ++ ++ +E+G P I F D N +P G + S+N Sbjct: 230 ---------GEAKGTLNAREVFEILVQKAWESGDPGIVFIDRINRDNPTPAQGEMESTNP 280 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNVIDI 638 C E L CNLGS+NL + + D+ +L IR +VR LDNVID Sbjct: 281 CGEQPLLPY----EACNLGSVNLAGLYLAGHGSTADSIDWAELKRIIRLSVRFLDNVIDA 336 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + +++ ++ H +R IGLG+MG+ L L IPY S +AV++A MEFI +AS Sbjct: 337 SRYPLDRITETVHRNRKIGLGVMGWADLLFQLRIPYDSQDAVKLAGRVMEFIRAEGRAAS 396 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 +LA+ERG + ++ S++ + + Sbjct: 397 KQLAKERGPFPAYAESVF-----------------GQRDLGPY----------------- 422 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWD 817 RN+ IAPT T++ + G S ++P + + + M G+ VN + LK + Sbjct: 423 RNATITTIAPTGTLSILAGCSSGVEPLFALSFARHVMDGERLVEVNPYFEQALKDEQCYS 482 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 E ++ + GS+ +E +P ++ + TA +I+P+W ++ + Q++ D A S + L Sbjct: 483 EKLMEAV-TQKGSVQTMEHLPQHMRDVFVTAMDIEPVWHLKMQAAFQEYTDNAVSKTVNL 541 Query: 878 DE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + IY A+ G K R S T G Sbjct: 542 PNSATIDDIRSIYWMAYERGCKGVTVYRDGCKQSQVLCTGDG 583 >gi|73748461|ref|YP_307700.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] gi|73660177|emb|CAI82784.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] Length = 599 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 169/647 (26%), Positives = 286/647 (44%), Gaps = 83/647 (12%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345 ++L RY + G IE P+ F RVA +A E + EFY Sbjct: 16 LSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQA 75 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S F+ ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ Sbjct: 76 MSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + + G + + + A V QGG R+G A L+ H D+ F+ Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNAAILDVTHPDILNFISC 195 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D + + + FM +V + + +P Sbjct: 196 KG----DPNALTNFYISVVVTRDFMTKVRSGEDYDIINPHT------------------- 232 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V R+++A ++ ++ ++TG P + F D N +P + + + C Sbjct: 233 --------GEVVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGC 284 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641 E TL CNLGSI+L + DY+KL T++ A+R LDNVID+N Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +K+ +R IGLG+MGF L L+ IPY S EA+ AD+ M+FI + AS +L Sbjct: 341 PTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKL 400 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ RG++ +++GS++D MRN+ Sbjct: 401 AEIRGSFPAYEGSMYDVPGGRP----------------------------------MRNA 426 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 C +IAPT T++ I GVS I+PS+ ++V++ + G+ +N + ++ + Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSREL 486 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 L + + ++E IPD LK++ TA I P W I + QK+ D A S + E Sbjct: 487 FEKLVSSN-HLHDMECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHE 545 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + ++ A+ GLK R S + T + ++ Sbjct: 546 ATREDMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQY 592 >gi|83589985|ref|YP_429994.1| ribonucleotide-diphosphate reductase subunit alpha [Moorella thermoacetica ATCC 39073] gi|83572899|gb|ABC19451.1| Ribonucleotide reductase large subunit [Moorella thermoacetica ATCC 39073] Length = 765 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 178/666 (26%), Positives = 280/666 (42%), Gaps = 90/666 (13%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFF----------MRVAMGLALKETEKEKRAV 340 IL RY NG +E P+ F R+ AL E + E+ A Sbjct: 1 MKITDNARTILEKRYLKKENGVPVETPEEMFRRVAAAVAGAERI-FNPALTEAQVEEYAD 59 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 FY L++S+ F+ ++PTL N+G QLS+CF+ V D + IF A+++ A++ K GG Sbjct: 60 RFYRLMTSWDFLPNSPTLMNAGRELGQLSACFVLPVDDSMDAIFTAVKDAALIHKSGGGT 119 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G ++ +R + + T G + G + F+KV N A+ QGG R+GA L H D+ Sbjct: 120 GFSFSRLRPKNSPVRSTGGVASGPVSFMKVFNAATEAIKQGGTRRGANMGILRVDHPDIL 179 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EF+ ++N + + N + + FM + ++ + L Sbjct: 180 EFISCKENNNE----LTNFNISVGLTREFMDALARDDYYELKF----------------- 218 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E +V++++ A ++ +++ + G P I F D N +P +G + Sbjct: 219 ------------EGRVYQRLKAQEVFAEIVNHAWANGEPGIIFLDRLNEDNPTPELGEIE 266 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 ++N C E L CNLGS+NL + ++DKLA T+R AVR LDNVI+IN Sbjct: 267 ATNPCGEQPLLPY----EACNLGSVNLANMVRDGGVNWDKLADTVRLAVRFLDNVIEINE 322 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +EK +R IGLG+MG+ L L +PY S EAVE+ + M FI A AS + Sbjct: 323 FPLEKISVMVRGNRKIGLGVMGWADMLFQLRLPYDSEEAVELGRKVMAFIQKEAHGASRD 382 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA ERG++ + S++ +RN Sbjct: 383 LAGERGSFPNIDKSIYRGQQ-------------------------------------LRN 405 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEA 819 + C IAPT TI+ I G + I+P + Y K+ + G VN + + E Sbjct: 406 ATCTTIAPTGTISMIAGTTSGIEPVFALAYTKNVLDGASLVEVNPVF-QAYVEENFPPEQ 464 Query: 820 MISDL--KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 S + IE IP +++++ TA EI P W I + Q D A S + Sbjct: 465 ARSIFNRIAAGARVSEIEYIPPEMRRVFVTALEISPEWHIRMQAAFQASTDNAVSKTVNF 524 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 E + + + Y A+ +G K RS S T + P + Sbjct: 525 PSEATREDVRRAYELAYQLGCKGVTVYRSGSREKEVLITGAKNKPVRDREPAREKTYPRP 584 Query: 937 SLGIPS 942 Sbjct: 585 RPKRTC 590 >gi|254369309|ref|ZP_04985321.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica FSC022] gi|157122259|gb|EDO66399.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica FSC022] Length = 590 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAAAKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANKALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMVGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + S++ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSNIITNGGSVQKLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|291290451|dbj|BAI83246.1| ribonucleotide reductase A subunit [Enterobacteria phage AR1] Length = 754 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 187/792 (23%), Positives = 322/792 (40%), Gaps = 62/792 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENVKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + EG Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + KW+ Q+ S N Y D + + W G K YY +R + Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735 Query: 911 VEKSTLKGVDGK 922 + ++ + Sbjct: 736 TDDYEIETPKAE 747 >gi|58584952|ref|YP_198525.1| ribonucleotide-diphosphate reductase subunit alpha [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419268|gb|AAW71283.1| Ribonucleotide reductase, alpha subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 594 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 192/680 (28%), Positives = 301/680 (44%), Gaps = 101/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + +E++ G +L DRY + E Q F+R+A + + A Y+ Sbjct: 6 INHEKNGKLTDFGKAVLSDRYLIEN-----ESYQDLFIRIANYYSDNKE----HAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+ FM STP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSNLWFMPSTPILSNGGTNRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G++PF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 117 GNLRSIGESVKG-SGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLD 175 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ A + D FM+ V + W L SP Sbjct: 176 IRKPTGGDPNRKALNIHHAVIVDDRFMQAVESDLEWNLISPYNN---------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 KV I A +W K+LT ETG P+I F D N P+ + + Sbjct: 220 -----------KVISTIKARDIWIKILTARIETGEPYIIFLDAINNNKPESYKRLNLDIK 268 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLC+EITL + + L + ++ I +R LDNV++ Sbjct: 269 MSNLCSEITLTTGYDHLNKLRTAVCCLSSVNLEYYKEWRHNELFIEDIMRFLDNVLEDFI 328 Query: 641 HTIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + S R+IGLG+MGF S L +P+ S A + + +++ A Sbjct: 329 NKAPDEIQRAKYSAMRERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLRKQADM 388 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA+E+GA +D+ + R Sbjct: 389 VSKKLAEEKGAC--------------LDAKEINLMER----------------------- 411 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 ++ +AIAPTA+I+ I G S I+P N++ + ++G F V N FL L +++ Sbjct: 412 ---FTHKLAIAPTASISIIAGNTSPGIEPYAANVFTQKTLTGSFVVRNKFLQKLLAEKNQ 468 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + K TA+E+D W+IE AS R +I Q+QS+NL Sbjct: 469 NNDKIWSSISTNEGSVQHLDFLNKHEKLTFRTAYELDQRWIIEHASDRTPYICQSQSVNL 528 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW GLK+ YY RS+S +K + TD Sbjct: 529 FLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKASEMFQQRTD---- 584 Query: 935 THSLGIPSSCTSDTECEVCQ 954 +EC CQ Sbjct: 585 ----------IDYSECLSCQ 594 >gi|134301989|ref|YP_001121958.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella tularensis subsp. tularensis WY96-3418] gi|134049766|gb|ABO46837.1| ribonucleoside-diphosphate reductase, alpha chain [Francisella tularensis subsp. tularensis WY96-3418] Length = 590 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 190/690 (27%), Positives = 284/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL ++ RD Q+L + Y L PQ F R A+ + + Sbjct: 3 NQSYLGINIDLSRDRELSEQAQQLLTNYYCLQNEP----SPQYAFARAAVAYSFGD---M 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y + FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYAAAAKGWFMFASPVLSNAPLPGVKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EFL +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIIEFLGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDQDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A +W +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDVIKARKIWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKDLGLTIKGSNLCNEIHLVTDEKRTAVCCLSSVNLERY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L L +P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEISKARYSASRERSLGLGAMGFHSYLQLHRVPFESQRAKEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L E+G G+ Sbjct: 376 IFKRIKEQALEETLILGAEKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLNKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + +LK++ TA E+D WL+ RQK Sbjct: 454 LEQELEKIGKNTEEVWSDIITNGGSVQQLDFLSKELKEVFKTAIEMDQDWLVYLGGERQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++ Q QSLN++ S L ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 YLCQGQSLNVFFPAGASRGYLHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKKRL- 572 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S+ EC C+ Sbjct: 573 -------------VEFSEIKQSENECIACE 589 >gi|330858747|ref|YP_004415122.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2] gi|327397681|gb|AEA73183.1| putative ribonucleotide reductase A subunit [Shigella phage Shfl2] Length = 754 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 187/792 (23%), Positives = 322/792 (40%), Gaps = 62/792 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + EG Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGTGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + KW+ Q+ S N Y D + + W G K YY +R + Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735 Query: 911 VEKSTLKGVDGK 922 + ++ + Sbjct: 736 TDDYEIETPKAE 747 >gi|289432508|ref|YP_003462381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] gi|288946228|gb|ADC73925.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. GT] Length = 599 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 170/647 (26%), Positives = 287/647 (44%), Gaps = 83/647 (12%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345 ++L RY + G IE P+ F RVA +A E + EFY Sbjct: 16 LSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQA 75 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S F+ ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ Sbjct: 76 MSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + + G + + + A V QGG R+G A L+ H D+ F+ Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISC 195 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D + N + + FM +V + + +P Sbjct: 196 KG----DPNALTNFNISVVVTRDFMTKVRSGEDYDIINPHT------------------- 232 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V R+++A ++ ++ ++TG P + F D N +P + + + C Sbjct: 233 --------GEVVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGC 284 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641 E TL CNLGSI+L + DY+KL T++ A+R LDNVID+N Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +K+ +R IGLG+MGF L L+ IPY S EA+ AD+ M+FI + AS +L Sbjct: 341 PTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKL 400 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ RG++ +++GS++D MRN+ Sbjct: 401 AEIRGSFPAYEGSMYDVPGGRP----------------------------------MRNA 426 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 C +IAPT T++ I GVS I+PS+ ++V++ + G+ +N + ++ + Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSREL 486 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 L + + ++E IPD LK++ TA I P W I + QK+ D A S + E Sbjct: 487 FEKLVSSN-HLHDMECIPDWLKRLLVTAHRIRPEWHIRIQAAFQKYTDNAVSKTVNFPHE 545 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + ++ A+ GLK R S + T + ++ Sbjct: 546 ATREDMANVFNMAYDQGLKGVTVYRDGSRAAQPLCTSESGVKLVDQY 592 >gi|241668403|ref|ZP_04755981.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876936|ref|ZP_05249646.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842957|gb|EET21371.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 590 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 187/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL D+ +D Q+L + Y L PQ F R ++ + + Sbjct: 3 NEKYLGIDIDISKDRELSEQAQQLLTNYYCLENEP----SPQYAFARASVAYSFGD---I 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ S FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EF+ +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A LW +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDTIKARKLWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L ++P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L +E+G G+ Sbjct: 376 IFKRIKEQAVEETLILGREKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + D++K + TA E+D W++ +RQK Sbjct: 454 LERELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 + Q QSLN++ S + ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 HLCQGQSLNIFFPAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKNRLV 573 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S EC C+ Sbjct: 574 EFSELKQSES--------------ECVACE 589 >gi|167627844|ref|YP_001678344.1| ribonucleotide-diphosphate reductase subunit alpha [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597845|gb|ABZ87843.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 590 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 187/690 (27%), Positives = 285/690 (41%), Gaps = 115/690 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + YL D+ +D Q+L + Y L PQ F R ++ + + Sbjct: 3 NEKYLGIDIDISKDRELSEQAQQLLTNYYCLENEP----SPQYAFARASVAYSFGD---I 55 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAM 392 A Y+ S FM ++P L N+ SCFL+ VPD L G+ E Sbjct: 56 NLAQRIYDAASKGWFMFASPVLSNAPLPGAKVKSLPISCFLSYVPDSLEGLIEHSSELRW 115 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+ GG+G W+ VR + + G IPF+ + VA QG RKG+ AY+ Sbjct: 116 LSVKGGGVGGHWSSVRAVSDK-------APGPIPFMHTVDADMVAYRQGKTRKGSYAAYM 168 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 + H D+ EF+ +R TGD R+ +++ A + D FM+ V + W L PD+ Sbjct: 169 DISHPDIVEFVGIRVPTGDVNRKCLNLHHAVNLTDDFMQAVANDEDWKLIDPDD------ 222 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 V I A LW +L + TG P++ F D N P Sbjct: 223 ---------------------KTVRDTIKARKLWETILETRYRTGEPYLNFIDTANRALP 261 Query: 573 QQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 + + SNLC EI L + + TAVC L S+NL + D K S I+ + Sbjct: 262 KSQKELGLRIKGSNLCNEIHLVTDEKRTAVCCLSSVNLEKY------DEWKDTSLIKDLI 315 Query: 630 RVLDNV----IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R LDNV ID I KA+ S R++GLG MGF S L ++P+ S A EI +E Sbjct: 316 RFLDNVLQFFIDHAGDEIAKARYSASRERSLGLGAMGFHSYLQKHNVPFESQRAEEINEE 375 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + I A+ ++ L +E+G G+ Sbjct: 376 IFKRIKEQAVEETLILGREKGEAPDMAGT------------------------------- 404 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN++ +AIAP A + I S SI+P N + G N + Sbjct: 405 -----------GRRNAHLLAIAPNANSSLILNTSPSIEPWKANAFTSRTRVGSHLTKNKY 453 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L EL++ E + SD+ + GS+ ++ + D++K + TA E+D W++ +RQK Sbjct: 454 LERELEKIGKNTEEVWSDIITNGGSVQQLDFLNDEIKSVFKTAIEMDQDWVVYLGGQRQK 513 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 + Q QSLN++ S + ++ AW G K YYLR+ ++ E + K +L Sbjct: 514 HLCQGQSLNIFFPAGASRGYIHKVHFNAWKYGCKGLYYLRTETSNRAENISKKVEKNRLV 573 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 + S EC C+ Sbjct: 574 EFSELKQSES--------------ECIACE 589 >gi|228861160|ref|YP_002854183.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51] gi|227438834|gb|ACP31146.1| ribonucleotide reductase A subunit [Enterobacteria phage RB51] Length = 754 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 187/792 (23%), Positives = 322/792 (40%), Gaps = 62/792 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + EG Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNEG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPADRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + KW+ Q+ S N Y D + + W G K YY +R + Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735 Query: 911 VEKSTLKGVDGK 922 + ++ + Sbjct: 736 TDDYEIETPKAE 747 >gi|228861542|ref|YP_002854563.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14] gi|227438558|gb|ACP30871.1| ribonucleotide reductase A subunit [Enterobacteria phage RB14] Length = 754 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 186/792 (23%), Positives = 321/792 (40%), Gaps = 62/792 (7%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + G Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNAG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPCEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + I+P + VK + G Sbjct: 586 APKYV-CDWSSLREDLKLFGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + KW+ Q+ S N Y D + + W G K YY +R + Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDLLYFWYFGGKNFYYHNTRDGSG 735 Query: 911 VEKSTLKGVDGK 922 + ++ + Sbjct: 736 TDDYEIETPKAE 747 >gi|319789960|ref|YP_004151593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermovibrio ammonificans HB-1] gi|317114462|gb|ADU96952.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermovibrio ammonificans HB-1] Length = 568 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 176/636 (27%), Positives = 286/636 (44%), Gaps = 89/636 (13%) Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYNL 345 ++IL RY E PQ F RVA ++ E + EF + Sbjct: 3 KLSETAIEILKARYL-----RPGETPQELFERVARAVSEAELLYGPASQAARWEEEFLKV 57 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + + F+ ++PTL N+GT QL++CF+ V D + IF ++ A + K GG G ++ Sbjct: 58 MENLEFLPNSPTLMNAGTPLGQLAACFVLPVEDSIEEIFASVSLMAKIQKTGGGTGFSFS 117 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + TNGK+ G + F+KV N A+ QGGKR+GA L H DV+EF+ Sbjct: 118 RLRPKGDTVKSTNGKASGPVSFMKVFNCATDAIKQGGKRRGANMGVLSVNHPDVKEFITC 177 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D + + N + D F ++ + L +P + Sbjct: 178 KT----DGKSFQNFNISVACTDDFFQKALKGGEIELINPRD------------------- 214 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 KV+ ++ A L + ++TG P I + D N +P +G + ++N C Sbjct: 215 --------GKVWSRVKADELLDLIAESAWKTGDPGILYIDEINRHNPTPALGRIEATNPC 266 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E+ L CNLGSINL + +++KL ++ AVR LD VID+N + + Sbjct: 267 GEVPLLPY----EECNLGSINLSKIVEKGRINWEKLERLVKVAVRFLDCVIDVNRYPHPE 322 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 +K +R IGLG+MG+ L L IPY S EAVE+A+ M FI+ A AS ELA+++ Sbjct: 323 IEKMAKGNRKIGLGVMGWAELLIELEIPYDSEEAVELAERLMGFINRKAFEASAELAKQK 382 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G++ + S++ R + +RN+ + Sbjct: 383 GSFPNIDKSVY----------------RGKT---------------------LRNATRTS 405 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDL 824 IAPT TI+ I G + SI+P + YVK + G + L+ ++K+ L + + L Sbjct: 406 IAPTGTISMIAGTTPSIEPLFAVGYVKRVLGGRRVPFIEPLLMKKVKELSL--QQLKEIL 463 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + G++ E IP+ +K+I TA EI P W ++ + QK D A S + L + + Sbjct: 464 ES--GTLQRAEGIPEKIKRIFKTAHEIAPEWHLKIQAAFQKHTDNAVSKTVNLPKSATPE 521 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + I+ + + LK R S V + + Sbjct: 522 DIKEIFITGYKLKLKGVTVFREGSKEGVVEFKVDQE 557 >gi|126658753|ref|ZP_01729898.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] gi|126620015|gb|EAZ90739.1| ribonucleotide reductase subunit alpha [Cyanothece sp. CCY0110] Length = 728 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 206/779 (26%), Positives = 340/779 (43%), Gaps = 91/779 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ DG++ + + + + A G ++S + S + + ++ L+ + Sbjct: 4 TVIKRDGSVANLDLNEIRDAIAYAIEG-YPLNSLELESRVNLQLNQPRTTRFIQETLVNT 62 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + L K+P + V R + EV+ L+ +Y + Sbjct: 63 AVQLATPKDPEWLNVAGRLHIWNWTHEVIAKRGYGYGHYDVFSDTNLFSKYTSQL----- 117 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + DL + ++ E D F++ G +L RY E+ Q F+ Sbjct: 118 ------KIYSQRDLQEAVSWIEPELDKVFDHAGATLLTQRYLSDD-----ELIQEVFLVT 166 Query: 325 AMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 A+ LA+ E E+ A FY ++ +TP L N +SCF+ +V D + Sbjct: 167 ALVLAIPERMDERMSYARAFYMAIAHRKISLATPILANLRFEGGSGTSCFILSVEDSIES 226 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF ++ A +++ GG+G + + +R +G+ + S G++ ++++ NDTA+AVNQGG Sbjct: 227 IFDNVKNTARISQEGGGVGINLSRIRAVGSWVRSKPNVSGGLMSWIRILNDTAIAVNQGG 286 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R GAV + WH+D+ EFL++R GD RR+ +D+ + D FM+RV Q A WTL Sbjct: 287 RRAGAVTVAADIWHLDIPEFLEMRSEAGDQRRKAYDVFPQVVVTDNFMRRVEQGATWTLV 346 Query: 503 SPDEVS-----DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 P EV DL +L+G EF+ AYE E A G++ + + ++A L+ +L ETG Sbjct: 347 DPYEVKQVLGIDLPNLWGTEFDDAYEQIEEAASMGDLTLAQTVNARNLFIDILETQVETG 406 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE-TAVCNLGSINLLAHFANNQF 616 P+I FKD N +P +H+G++ S NLC E + CNL S+NL Sbjct: 407 LPYIAFKDALNRANPNKHIGIIPSVNLCCESFSVVVPGKLAHSCNLASVNLAQVED---- 462 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+L + AVR+LDN ID+ I +A+ N R IG+G++G L + Y Sbjct: 463 --DELPEICQLAVRLLDNTIDVTTAPIGEARNHNRELRTIGVGVLGLADYLAKRGLRYQD 520 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 + E + S+ + SV LA+ERG+Y + S + G L Sbjct: 521 KREI---RELFKEFSYQCLMGSVLLAKERGSYPAINSSEYGMGNI--------------L 563 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 +R+ R W L G+RNS+ MAIAP + + I G + S+ P Y +S Sbjct: 564 GKSRSQRPEWKALYDLFDFYGIRNSHIMAIAPNTSSSLIQGCTASVLPPYAKFNAESLGK 623 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 GD F L++ + ID + Sbjct: 624 GDVMKAVPF----LREYGDNYQENQR----------------------------IDQRVV 651 Query: 857 IESASRRQKWIDQAQSL----NLYLD------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +++ + QKW+D S+ NL D + +AW GLK YY+R+ Sbjct: 652 VDAIAEMQKWVDTGISMELVFNLNPDVYEPNKTVDASDIYDTALRAWRRGLKAIYYIRT 710 >gi|147669241|ref|YP_001214059.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. BAV1] gi|146270189|gb|ABQ17181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalococcoides sp. BAV1] Length = 599 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 169/647 (26%), Positives = 285/647 (44%), Gaps = 83/647 (12%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNL 345 ++L RY + G IE P+ F RVA +A E + EFY Sbjct: 16 LSTTAKRVLEKRYLKKDDSGRVIETPEDMFHRVAKVMASAEHKYAPGTDTSRIEEEFYQA 75 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S F+ ++PTL N+G + QLS+CF+ V D + IF A+++ A++ K GG G ++ Sbjct: 76 MSRLEFLPNSPTLLNAGRQAGQLSACFVLPVEDSIESIFDAVKQTALIHKSGGGTGFSFS 135 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G + + G + + + A V QGG R+G A L+ H D+ F+ Sbjct: 136 DLRPAGDKVGELTEVAGGPVSVINIFAAAADYVRQGGVRRGCNTAILDVTHPDILNFISC 195 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + D + + + FM +V + + +P Sbjct: 196 KG----DPNALTNFYISVVVTRDFMTKVRSGEDYDIINPHT------------------- 232 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V R+++A ++ ++ ++TG P + F D N +P + + + C Sbjct: 233 --------GEVVRRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPSIAPIRHVSGC 284 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLASTIRTAVRVLDNVIDINCH 641 E TL CNLGSI+L + DY+KL T++ A+R LDNVID+N Sbjct: 285 GEQTLLPY----ESCNLGSISLPRMLKRDGERVVVDYEKLGRTVKMAIRFLDNVIDVNKF 340 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + +K+ +R IGLG+MGF L L+ IPY S EA+ AD+ M+FI + AS +L Sbjct: 341 PTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMDFIKETSHRASSKL 400 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ RG++ +++GS++D MRN+ Sbjct: 401 AEVRGSFPAYEGSMYDVPGGRP----------------------------------MRNA 426 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 C +IAPT T++ I GVS I+PS+ ++V++ + G+ +N + ++ + Sbjct: 427 TCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPYFEEMARREGFHSREL 486 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 L + + ++E IPD LK++ TA I P W I + QK+ D A S + E Sbjct: 487 FEKLVSSN-HLHDMECIPDWLKRLLVTAHCIRPEWHIRIQAAFQKYTDNAVSKTVNFPHE 545 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + ++ A+ GLK R S + T + ++ Sbjct: 546 ATRADMANVFNMAYDQGLKGITVYRDGSRAAQPLCTSESGVKLVDQY 592 >gi|9632790|ref|NP_049845.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4] gi|417656|sp|P32282|RIR1_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Protein B1; AltName: Full=Ribonucleotide reductase gi|5354414|gb|AAD42621.1|AF158101_208 NrdA aerobic NDP reductase, large subunit [Enterobacteria phage T4] gi|509024|gb|AAA32527.1| ribonucleoside diphosphate reductase [Enterobacteria phage T4] Length = 754 Score = 383 bits (982), Expect = e-103, Method: Composition-based stats. Identities = 187/782 (23%), Positives = 317/782 (40%), Gaps = 64/782 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + ++ G SF+ +++ ++ A G V + + DG++ D++T +I Sbjct: 4 INVIKSSGVSQSFDPQKIIKVLSWAAEG-TSVDPYELYENIKSYLRDGMTTDDIQTIVIK 62 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ I +EP+Y V AR L+ LR+ V + + ++ + G Sbjct: 63 AAANSISVEEPDYQYVAARCLMFALRKHVYGQYEPR-----------SFIDHISYCVNAG 111 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L ++ +L + +K+ERD F Y G L ++Y G E PQ F Sbjct: 112 KYDPELLSKYSAEEITFLESKIKHERDMEFTYSGAMQLKEKYLVKDKTTGQIYETPQFAF 171 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K + FY +S+ TP + T Q SSC + D L Sbjct: 172 MTIGMALHQDEPVDRLKHVIRFYEAVSTRQISLPTPIMAGCRTPTRQFSSCVVIEAGDSL 231 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I A G+G + +R G+ I + GVIPF K + +Q Sbjct: 232 KSINKASASIVEYISKRAGIGINVGMIRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 291 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + DL M+R +N T Sbjct: 292 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNDLMMERFGKNDYIT 351 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+ + + + A++ ++I A L+ ++T T + Sbjct: 352 LFSPHEMGGELYYSYFKDQDRFRELYEAAEKDPNIRKKRIKARELFELLMTERSGTARIY 411 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--QFD 617 + F D N +P + + SNLC EI + ++ + +G L A +N D Sbjct: 412 VQFIDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNSPDAEIGLCTLSAFVLDNFDWQD 471 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A+K R +G+G+ + + L Y Sbjct: 472 QDKINELAEVQVRALDNLLDYQGYPVPEAEK-AKKRRNLGVGVTNYAAWLASNFASYE-- 528 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 +A ++ E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 529 DANDLTHELFERLQYGLIKASIKLAKEKGPSEYYSDTRWSRGELPIDWYN---KKIDQIA 585 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + W L++ +K G+RNS A+ P + + + + +P + VK + G Sbjct: 586 APKYV-CDWSALREDLKLFGIRNSTLSALMPCESSSQVSNSTNGYEPPRGPVSVKESKEG 644 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F V + DL+D K + K + T Sbjct: 645 SFNQVVPNIE---HNIDLYDYTWKLAKKGN---------------KPYLT---------- 676 Query: 858 ESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYY--LRSRSA 908 + KW+ Q+ S N Y D + + W G+K YY R S Sbjct: 677 -QVAIMLKWVCQSASANTYYDPQIFPKGKVPMSIMIDDMLYGWYYGIKNFYYHNTRDGSG 735 Query: 909 TS 910 T Sbjct: 736 TD 737 >gi|154278713|ref|XP_001540170.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces capsulatus NAm1] gi|150413755|gb|EDN09138.1| ribonucleoside-diphosphate reductase large subunit [Ajellomyces capsulatus NAm1] Length = 508 Score = 383 bits (982), Expect = e-103, Method: Composition-based stats. Identities = 171/479 (35%), Positives = 253/479 (52%), Gaps = 20/479 (4%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNMYDGLSESDLETAL 202 + + DG ++ V C GL V + + + +Y G++ +L+ Sbjct: 1 MFVYKRDGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L ++ + LY + + Sbjct: 61 AETAAYMTVTHPDYATLAARIAVSNLHKQTKKQFSSV--------IDDLYHYHNPKNQRP 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 + + + Y+RDF ++Y G + L Y L ING E PQ M Sbjct: 113 APMISQTTYETVMRHADEFNSAIVYDRDFNYQYFGFKTLERSYLLRINGKVAERPQHMIM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-PDDLY 381 RVA+G+ + E+ +E YNL+S F ++PTLFN+GT PQ++SCFL + D + Sbjct: 173 RVAVGIHGDDVERV---IETYNLMSQKFFTHASPTLFNAGTPQPQMASCFLIDMKEDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L+ A+++K +GG+G + +RG G++I GTNG S G++P L+V N+TA V+QG Sbjct: 230 GIYDTLKTCALISKTAGGIGLNIHRIRGTGSYIAGTNGSSNGIVPMLRVFNNTARYVDQG 289 Query: 442 -GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 KR GA YLE WH D+ EFLDLRKN G + R D+ A W PDLFMKRV +N WT Sbjct: 290 GNKRPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWT 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D+YG EFE YE YE+ E + + + A LW +L ETG+P+ Sbjct: 350 LFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILEAQTETGNPF 404 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 + +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L + +YD Sbjct: 405 MLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYD 463 >gi|51893898|ref|YP_076589.1| ribonucleotide-diphosphate reductase subunit alpha [Symbiobacterium thermophilum IAM 14863] gi|51857587|dbj|BAD41745.1| ribonucleotide reductase [Symbiobacterium thermophilum IAM 14863] Length = 776 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 164/680 (24%), Positives = 277/680 (40%), Gaps = 98/680 (14%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FY 343 ++ ++ RY E P RVA +A E + E FY Sbjct: 1 MELTHIAKTVMEKRYLRMKEDGTRETPDEMLRRVARVIAAVEEKYGASKKEIRAVEERFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 L+ FM ++PT +GT QLS+CF+ V D L I+ +++ A++ + GG G Sbjct: 61 QLMDRQDFMPNSPTFTGAGTALGQLSACFVLPVGDSLPEIYETMKQAALIHQTGGGTGFA 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R G + + G + G + FL+V N + A+ QGG R+GA L H D+ +F+ Sbjct: 121 FSRLRPAGDVVRSSQGVASGPVSFLRVYNASTEAIKQGGTRRGANMGILRVDHPDILQFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + + D + + N + I D FM+ + + + L +P Sbjct: 181 E----SKADITQITNFNISVAITDAFMEALEKGTEYELINPR------------------ 218 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V K+SA +W K++ ++TG P I F D N R+P HV V+ ++N Sbjct: 219 ---------NGEVTGKLSAKLVWDKLVENAWKTGEPGIVFIDRINRRNPNNHVEVIEATN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDI 638 C E L CNLGSINL N D +++L RTA R LDNVID Sbjct: 270 PCGEQPLPPY----GSCNLGSINLANFVKNPYTDRAEVDWERLGEVARTATRFLDNVIDA 325 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + + + R IGLG+MG+ L + +PY S EAV + + M FI A+ S Sbjct: 326 NKYPLPQIAEKALRDRRIGLGIMGWAEMLVQMGLPYDSEEAVALGNRVMTFIKQKALEES 385 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 + LA+ RG Y ++GS W + + Sbjct: 386 MALAEVRGPYPEWEGSQWHKAGLK-----------------------------------V 410 Query: 759 RNSNCMAIAPTATIANICG-----VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 RN+ +APT TI+ S I+P + ++ ++ V+ + ++ Sbjct: 411 RNATLTTVAPTGTISLFAARPDLPCSGGIEPKFALVFTRNQAGALMLDVDGQFASIARRE 470 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR---------Q 864 + + ++ + G+ + +P+ ++I AT+ +I P W + + Q Sbjct: 471 GWYSDELMQQVADR-GTARGVSGVPEKWQRIFATSHDITPEWHVRMQAAFQGGDGLPVDQ 529 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 + +D A S + + + + Y AW +GLK R S S +T + Sbjct: 530 QPVDAAVSKTINFPHHATVEDVGKSYALAWQLGLKGITVYRDGSRASQVLTTGDKTKKQE 589 Query: 924 NAVPVTDPNSSTHSLGIPSS 943 P + + Sbjct: 590 EPAAPPAPQGPSLRPRPTEA 609 >gi|317484384|ref|ZP_07943302.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6] gi|316924359|gb|EFV45527.1| ribonucleoside-diphosphate reductase [Bilophila wadsworthia 3_1_6] Length = 751 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 167/655 (25%), Positives = 295/655 (45%), Gaps = 90/655 (13%) Query: 294 EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------FYNL 345 ++L RY+ NG +E F RVA +A +E + E+ + FY++ Sbjct: 14 NPNAEKVLSKRYYRKDENGQCVEDATGLFWRVASSVAAEEAKYEQSPWKPDALARAFYDM 73 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++ + F+ ++PTL N+G+ QLS+CF+ V D + IF A++ AM+ K GG G ++ Sbjct: 74 MTDWRFLPNSPTLMNAGSELGQLSACFVLPVGDSIEEIFDAVKFAAMIHKSGGGTGFSFS 133 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + + T G + G + FL++ N + QGG R+GA L H D+ EF+ Sbjct: 134 RLRPKNSRVGTTGGVASGPVSFLRIFNTATEQIKQGGTRRGANMGILRIDHPDILEFIRA 193 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ G+ ++ N + I + FM+ V Q+ + L +P Sbjct: 194 KEQEGE----FNNFNLSVGITEAFMQAVEQDRDYALVNPAS------------------- 230 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K +++A ++ ++ +++G P I F D N +P G + S+N C Sbjct: 231 --------GKEQGRLNAREVFNLLVDKAWQSGDPGIIFLDRINRDNPTPAQGEIESTNPC 282 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLASTIRTAVRVLDNV 635 E L CNLGS+NL + F D+ + TI AVR LDNV Sbjct: 283 GEQPLLPY----EACNLGSLNLSSFFVPGHLDETNPADRGIDWAGIERTIALAVRFLDNV 338 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D + +E+ + +R IGLG+MG+ L+ L IPY S +A+ +A+ M+FI Sbjct: 339 VDASQFPLERIAEQVRRNRKIGLGVMGWADLLYQLRIPYDSADAITLAERIMDFIETRGR 398 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 +AS++LA ERG + +++ S++ P Sbjct: 399 AASIQLAAERGPFPAYETSVYPTKGIPP-------------------------------- 426 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814 +RN+ IAPT T++ + G S ++P + + ++ M G+ VN L++ D Sbjct: 427 --LRNATITTIAPTGTLSILAGCSSGVEPLFALSFARNVMDGERLMEVNPHFEEALREID 484 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + + ++ + GSI +++++P+DL+++ TA +I P W + + Q+ D A S Sbjct: 485 CYSQPLLEGVAEL-GSIQSLDQLPEDLRRVFVTAMDIAPEWHLRMQAAFQRHTDNAVSKT 543 Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 + L + + IY A+ G K R S ++ +T V Sbjct: 544 VNLPNSATRDDIFAIYWMAYEEGCKGVTVYRDGSKSTQVLTTSAPAAKPSEESQV 598 >gi|206889365|ref|YP_002249440.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206890598|ref|YP_002249390.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741303|gb|ACI20360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742536|gb|ACI21593.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermodesulfovibrio yellowstonii DSM 11347] Length = 584 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 173/649 (26%), Positives = 302/649 (46%), Gaps = 78/649 (12%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK----RAVEFYNLLS 347 F +L RY L G IE P+ F RV+ +A E +K +F+ L+S Sbjct: 3 FTDRAKTVLEIRYLLKNEKGEPIENPEQLFQRVSSYIAQAEKIYKKNSFEWEEKFHELIS 62 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 S F+ ++P L N+G QL++CF+ + D + IF L++ A++ + GG G +++ + Sbjct: 63 SLRFLPNSPALMNAGKPKAQLAACFVLPIEDSIESIFKTLKDAALILQSGGGTGFNFSSL 122 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R G + T G + G + F+K+ + + + QGG R+GA L H D+ EF+ +++ Sbjct: 123 RPKGDVVRSTGGVASGPVSFMKIFDKASDIIKQGGARRGANMGVLRVDHPDIFEFIRIKR 182 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 + +++ A + D FM+ + +N + L +P Sbjct: 183 I---ESLSNFNISVA--VTDSFMEALFKNDYFPLINPRT--------------------- 216 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +V RK+ A ++ +++ +ETG P + F D N +P H+G + S+N C E Sbjct: 217 ------KEVVRKVKAKDIFDEIVESAWETGDPGVIFIDTINRSNPTPHIGQIDSTNPCGE 270 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 L C LGS+NL + + D+++L ++TA R LD+ ID+ + + + + Sbjct: 271 QPLLPY----EACILGSLNLSKYVKEGKIDFERLEHDVKTATRFLDDAIDVTHYPVPEVE 326 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 K + +R IGLG+MG+ L L IPY +A+ +A++ M+FIS + AS ELAQERG Sbjct: 327 KMHKGNRKIGLGIMGWADCLVELGIPYNHKKALALAEQVMQFISEKSHKASQELAQERGV 386 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + +FKGS+W++ P MRN+ IA Sbjct: 387 FPNFKGSVWEKKGIP-----------------------------------MRNATTTTIA 411 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT TI+ I S I+P + Y + + +F ++N +L+ +++ + E I+ L Sbjct: 412 PTGTISIIADCSSGIEPYFLLAYKQRILDTEFEIINKYLIEIAQKQGFYSEDFINQL-RQ 470 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-GKKLD 886 G++ ++ +P +K++ TA EI P I+ + QK+ D A S + L + + + + Sbjct: 471 KGTLRGMKEVPLRIKRLFKTALEITPEEHIQMQASFQKYTDNAVSKTINLSQRTRKEDVA 530 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 I+ A+ GLK R S + V P + Sbjct: 531 RIFILAYKKGLKGITIFRYGSKRGTLLKISDAHLAECCEVKGRAPRITK 579 >gi|300087825|ref|YP_003758347.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527558|gb|ADJ26026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 592 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 176/641 (27%), Positives = 282/641 (43%), Gaps = 83/641 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFY 343 L++L RY G +E P F RVA +A E + A EFY Sbjct: 10 LNLTPNALRVLEKRYLRRDSRGEVVETPAELFRRVADAVASAERKYASDTSVRYIADEFY 69 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 ++S F+ ++PTL N+GT QLS+CF+ V D + IF A++ A + K GG G Sbjct: 70 RIMSGLLFLPNSPTLLNAGTTSGQLSACFVLPVEDSIEAIFEAVKYTAQIHKSGGGTGFS 129 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + VR +G + G + G + + V + A V QGG R+G L H D+ +F+ Sbjct: 130 FAHVRPVGDDVDGRADAATGPVALIDVFSKAADYVRQGGIRRGCNSVVLPVDHPDIMDFI 189 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D + + + D FM+RV + L P Sbjct: 190 KAKA----DPLSLTNFYISVAVTDDFMRRVKTGQDYPLIYPR------------------ 227 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 ++ ++A A++ +++ + TG P F D N +P H+G + + Sbjct: 228 ---------NGQITGWLNAGAVFDRIVDQAWSTGDPGFVFIDQINRANPTPHLGRIEIIS 278 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF----DYDKLASTIRTAVRVLDNVIDIN 639 C E TL CNLGSINL + D+D L + AVR LDNVID+N Sbjct: 279 GCGEQTLLPY----ESCNLGSINLAKMVKLDNNRTVVDFDTLKDVVSLAVRFLDNVIDVN 334 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 I + ++ R IGLG+MGF L+ + IPY S AV+IA E M FI A S Sbjct: 335 KFPISRIEEMTKRTRKIGLGVMGFADMLYQMGIPYNSESAVKIAREVMRFIKDEAHRTSR 394 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 LA+ERG + +FKGS++ R+ L MR Sbjct: 395 LLARERGPFPAFKGSIY---------------DREGLEP-------------------MR 420 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDE 818 N+ C +APT T++ I G S I+P + ++V++ + G+ VN +K ++ E Sbjct: 421 NAACTTVAPTGTLSIIAGCSSGIEPVFAGVFVRNILDGENLLEVNPHFEKAVKDAGVYSE 480 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 +++ L + + + +P++++KI TA ++ P W ++ + Q++ D A S + Sbjct: 481 ELLARLVKCN-HLHDQHDVPEEIRKIFVTAHQVSPEWHVKIQAAFQEFTDNAVSKTVNFA 539 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + + ++L ++R A+ GLK R S T Sbjct: 540 RQATREELASVFRMAYESGLKGITVYRDDSRELQPLCTGDT 580 >gi|282599258|ref|YP_003358570.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella phage phiSboM-AG3] gi|226973564|gb|ACO94317.1| NrdA ribonucleoside-diphosphate reductase alpha subunit [Shigella phage phiSboM-AG3] Length = 759 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 183/786 (23%), Positives = 328/786 (41%), Gaps = 78/786 (9%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 + ++ DG+ + F+ ++ +V+ AC GL VS V++ + D + ++ LI Sbjct: 1 MINVIKRDGSSVPFDIEKPHEVVDRACDGLTGVSMSEVIAASKIQFTDNMRTDRIQDILI 60 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ +LI + PNY V AR LR+ V + F + I++ Sbjct: 61 QAAASLISVDKPNYQYVAARLKSYDLRKAVYGQYKPPHLL-----------DIFVKNIKQ 109 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR-----IEMP 317 V R + + L + + ++RD F + + L ++Y L + E P Sbjct: 110 RVYDREFLDLYTTEEFNELNDVINHKRDKNFTWAAMGQLTEKYLLRDRSKKDSKIFYETP 169 Query: 318 QAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q +M +AM L + + + +FY S+ F TP + T Q SSC L Sbjct: 170 QVMYMGIAMALFSNWDKDSRLEMVKKFYEYASTGKFSLPTPIMAGVRTPTRQFSSCVLIK 229 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I + G+G D +RG+G+ I G G+IPF+K Sbjct: 230 TGDTLDSINATAKTIVDYVSKRAGIGFDVGAIRGIGSPIRGGEMVHTGLIPFIKYLTGAL 289 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA AY+ WH ++ + L+ N G + R ++ I + +R+ Sbjct: 290 KSCSQGGIRGGAATAYIPLWHYQFDDVVVLKNNRGTEENRERRIDYGIQINRVMFERLVA 349 Query: 496 NAGWTLFSPDEVSDLHDLYG---KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 LF P + ++++ Y +F YEN + AD G ++ +K+ A +++ +L Sbjct: 350 KQPLYLFDPKDNREMYEAYFADVDKFRTLYENMIKAADAGLVR-SKKLQAEEVFQMLLDQ 408 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA--- 609 +TG +I F D N SP ++ ++SSNLC EI L + E G + L Sbjct: 409 RSDTGRIYIAFVDHMNEYSPF-NLDTIYSSNLCLEIALPTREFEQYNDENGRVALCTLAS 467 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D ++ V LD +++ + +A+K+ +R +G+G++ L Sbjct: 468 FNLTAFEDPTEMEDVAFVLVSALDMLLEYQDYPAIQARKAVEDYRPLGVGIVNVAHFLAK 527 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 Y SP +E+ D M + F+ + AS LA + GA +G++ G D L Sbjct: 528 NFTGYGSPAGLEMLDAWMAHLHFYLVKASNRLAMKFGACK--RGTIHGMGQVTADLQPLP 585 Query: 730 AE--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 + + L WD+LK +KT G+RN+ +A+APT + + + + I+P Sbjct: 586 LDILPNGKKPEGMAYGLDWDDLKDDLKTYGIRNATLLAVAPTESSSQVLNATNGIEPPKG 645 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + +K + G + V + + L ++ Sbjct: 646 LVSIKGSKDGTYKQVVPDV--------------------------------ETLGPLYDL 673 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----------GKKLDFIYRQAWLMG 896 +++D + +++A+ Q+W+DQ+ S N + D + + Y W G Sbjct: 674 KWDLDCIEYLKTAAVIQRWVDQSISTNTWYDPEKYPDGKIPRAKMMQDILSFYM--W--G 729 Query: 897 LKTTYY 902 KT YY Sbjct: 730 GKTLYY 735 >gi|32453720|ref|NP_861929.1| ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage RB69] gi|32350539|gb|AAP76138.1| NrdA aerobic NDP reductase, large subunit [Enterobacteria phage RB69] Length = 751 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 183/785 (23%), Positives = 312/785 (39%), Gaps = 70/785 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G +F+++++ ++ C G + + E ++ DG+S D++ I Sbjct: 1 MQVTKSSGVSQNFDAQKIIQVLTWQCEG-TQIDPYELYEEIKTHLVDGMSTKDIQKICIK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I +EP+Y V A+ L+ LR++V + ++ + EG Sbjct: 60 VAANSISVEEPDYQYVAAKGLMFALRKDVYGQFEPPA-----------FIDHISYCVNEG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L +++YL + +K+ERDF Y G L ++Y G E PQ Sbjct: 109 KYDPELLSRYSAEEIIYLDSRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168 Query: 322 MRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L ET + K + FY+ +S+ TP + + T Q SSC + D L Sbjct: 169 MAIGMALHQDETHDRLKHIIRFYDAVSTHQVSLPTPIMAGARTPTRQFSSCVVIEAGDSL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R G+ I + GVIPF K + +Q Sbjct: 229 KSINKTSASIIEYISKRAGIGINVGMLRAEGSKIGMGEVRHTGVIPFWKHFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G D R M+ I DL M+R+ +N T Sbjct: 289 GGIRGGAATAYYPMWHLEVENLLVLKNNKGVDENRIRHMDYGIQINDLMMERLGKNDYIT 348 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP E+S E + + +A++ ++I A+ L+ +T T + Sbjct: 349 LFSPHEMSGELYYSFFEDQDKFRELYEKAEKDPTIRKKRIKALELFELFMTERSGTARIY 408 Query: 561 ITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFD 617 F D N +P + + SNLC EI + ++ +G L A + D Sbjct: 409 PQFVDNTNNYTPFIREKAPIRQSNLCCEIAIPTNDVNGPDAEIGLCTLSAFVLDKFDWQD 468 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 DK+ VR LDN++D + + +A K R +G+G+ + + L Y Sbjct: 469 QDKINELAEVQVRALDNLLDYQDYPVPEALK-AKKRRNLGVGVTNYAAWLASNFASYEDA 527 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 + E E + + I AS++LA+E+G + + W +G PID + D++A Sbjct: 528 NY--LTHELFERLQYGLIKASIKLAKEKGPCEYYSDTKWSRGELPIDWYN---KKIDQIA 582 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 W + K G+RNS A+ P + + + + I+P + +K + G Sbjct: 583 APNYV-CDWKNFELNSKEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKESKEG 641 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW-- 855 +F V + + ++ A+++ Sbjct: 642 NFRQVVPNI--------------------------------EHNMSLYDYAWKLAKKGNK 669 Query: 856 -LIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYY--LRS 905 + + KW+ Q+ S N Y D +K + W G K YY R Sbjct: 670 PYLTQVAIMLKWVCQSASANTYYDPAVFEKGKVPMSVMLDDLLYFWYFGGKNLYYHNTRD 729 Query: 906 RSATS 910 S T Sbjct: 730 GSGTD 734 >gi|256830880|ref|YP_003159608.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfomicrobium baculatum DSM 4028] gi|256580056|gb|ACU91192.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfomicrobium baculatum DSM 4028] Length = 744 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 171/652 (26%), Positives = 289/652 (44%), Gaps = 84/652 (12%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVE 341 D + +L RY +G+ IE + F RVA +A E + A Sbjct: 12 DVSLNSNAELVLKKRYQRKGLDGTPIETAKEMFWRVAASIASMEKNYPSSPFKPKDLART 71 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++ + F+ ++PTL N+GT QL++CF+ V D + IF A++ A++ K GG G Sbjct: 72 FYSLMTEYDFLPNSPTLMNAGTELGQLAACFVLPVGDSMDEIFDAVKNAALIHKSGGGTG 131 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 +T +R + + T G + G I FLK+ N V QGG R+GA L H D+ E Sbjct: 132 FSFTRLRPKDSRVGSTGGVASGPISFLKIFNTATEQVKQGGTRRGANMGILRVDHPDILE 191 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ GD + N + + + FM+ V + + L +P Sbjct: 192 FIRAKEREGDLN----NFNLSVALTEKFMQAVENDEEYPLVAPQSQE------------- 234 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 V K+ A ++ ++ +E+G P I F D N +P G + S Sbjct: 235 --------------VIEKLKAREVFELLVRKAWESGDPGIIFIDRINRDNPNPDQGEIES 280 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVID 637 +N C E L CNLGSINL D+D+L + +VR LDNVID Sbjct: 281 TNPCGEQPLLPY----EACNLGSINLARFVREKDEGVEIDWDRLREVVHLSVRFLDNVID 336 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + +++ ++ +R IGLG+MG+ L+ L +PY S A+ +A++ M FI A SA Sbjct: 337 ASEYPLDRITETVRKNRKIGLGVMGWADLLYQLGLPYDSRRAIVLAEQMMNFIQKEARSA 396 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ELA+ERG + S++ S++ + T+ + Sbjct: 397 SKELAKERGPFPSYETSIY------------KEQNLGPYRHATTTTIAPTGTL------- 437 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLW 816 + I G S ++P + +V+ M G+ T NSF V L + + Sbjct: 438 ---------------SIIAGCSSGVEPLFALCFVRQVMDGEKLTEANSFFVKALHDQGCY 482 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E +++++ GS+ N++ +P++L+ ++ T+ +I+P W ++ + QK D A S + Sbjct: 483 SEKLMAEVIE-KGSVKNMDFLPEELRNVYVTSMDIEPQWHLKMQAAFQKHTDNAVSKTVN 541 Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 L + + + IY A+ G K R + T G + + Sbjct: 542 LPNSATQEDIYQIYWMAYEEGCKGVTVYRDGCKSVQVLCTGDGNKEEKKSDE 593 >gi|160931914|ref|ZP_02079307.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753] gi|156869251|gb|EDO62623.1| hypothetical protein CLOLEP_00746 [Clostridium leptum DSM 753] Length = 812 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 174/670 (25%), Positives = 287/670 (42%), Gaps = 85/670 (12%) Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVE 341 R L +L RY + G IE + F RVA +A + E A Sbjct: 58 RTMELSKNALTVLERRYLIKNGEGVVIETVEELFRRVAGAIAASDRRYDENADCEALADS 117 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY ++++ F+ ++PTL N+G QLS+CF+ V D + GIF +++ A++ K GG G Sbjct: 118 FYRMMTNLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFETIKQAALIHKSGGGTG 177 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R G+ ++ T G + G I F+KV N AV QGG R+GA L H D+ E Sbjct: 178 FSFSRLRPCGSAVNSTGGVASGPISFMKVFNMATEAVKQGGTRRGANMGILRVDHPDIME 237 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ + N + + N + + + FM V + L P Sbjct: 238 FIHCKTNNKE----ITNFNISVGLTEKFMNAVEAGKDYELVDPH---------------- 277 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +V ++A ++ ++ + G P I F D N + G + S Sbjct: 278 -----------GGRVTGTLNAREVFECIVDAAWHNGEPGIIFLDRLNRDNVVPKAGEIES 326 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVID 637 +N C E L CNLGSINL FD+DKL +T + AV LDNVID Sbjct: 327 TNPCGEQPLLPY----ESCNLGSINLTKMLREENGVYSFDWDKLKATAKKAVHFLDNVID 382 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 N + +++ R +GLG+MG+ AL L IPY S +AV +A+ M ++ Sbjct: 383 ANKYPLKEIDFMTKQTRKVGLGVMGWADALLRLKIPYNSEQAVRLAETVMRAVTEAGREE 442 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ELA+ RG + F+ S DQ + Sbjct: 443 SRELAKARGTFPLFQESTLDQELPQ----------------------------------- 467 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLW 816 RN+ IAPT T++ + S ++P + +Y+++ M G + VN L L++R L+ Sbjct: 468 -RNATVTTIAPTGTLSLLASCSSGVEPIFGYVYIRNIMDGTEMIEVNPILREVLEERGLY 526 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + ++ + GS+ IE IP++++++ +A E+ P + I + Q+ D A S + Sbjct: 527 SDELMKKIAK-QGSLEGIEEIPEEIRRVFVSAHEVSPEFHIRMQAAFQRHTDNAVSKTVN 585 Query: 877 L-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + + +++ +Y+ A+ +G K R S + + K P + Sbjct: 586 FCNSATREEVAEVYKLAFRLGCKGVTIYRDGSRSEQVLNIGKVKKDGQEESPAEGGQAVI 645 Query: 936 HSLGIPSSCT 945 P T Sbjct: 646 KPRPRPDMTT 655 >gi|126460402|ref|YP_001056680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum calidifontis JCM 11548] gi|126250123|gb|ABO09214.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pyrobaculum calidifontis JCM 11548] Length = 853 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 185/876 (21%), Positives = 347/876 (39%), Gaps = 102/876 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 +++ +G++ F ++L +E A + V + + +L + Sbjct: 3 RVLKLNGSVEPFQPEKLRRSIERAAQD----AGVEVDGAADIKVERDVGSWELADLVHVE 58 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + P A+V LL ++ +E+ + + + ++ + L + + Sbjct: 59 LLKKAIERPELAEVAKSHLLGRIYKEIFGRDFLRVKSDEEYQRRALAAFEKLAGVIKPEA 118 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD-RYFLHING-SRIEMPQAFFMR 323 LL + L+ E D + Y L++ + Y L E P Sbjct: 119 LELLRQLK-----------LRPEFDRSLSYNALRLFTNGNYALRRLDFQLAETPS----M 163 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 A +A +RA +Y+ ++S + ++P FN+ T +SCF+ + D L I Sbjct: 164 AAARVATAVARDVERARLYYDYITSLKLIPASPYWFNAWTSKEMFASCFILMIEDCLSSI 223 Query: 384 --------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + L + ++ + GG+G D++ +R G + G+ G + G I F+K+ + Sbjct: 224 THPGKRCIYDVLTRSGLIQQAGGGVGYDFSLLRPEGDVVRGSAGVASGPISFMKLFDANV 283 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR--- 492 + QGGKR+GA L WH D+ +F+ + D + N + + D FM++ Sbjct: 284 EVIKQGGKRRGAQMGTLHVWHPDIRKFIKAKTGELKDV-HLQNFNISVVVDDAFMEKALD 342 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ + L +P V + + E R+ + ++A L+R+++ Sbjct: 343 VDKDPNYPLVNPRIVVEKLGIKPIEVLEL----TREVQLPKDATVGSVNAKELFREIVEG 398 Query: 553 LFETGHPWITFKDPCNIRSPQQHV------GVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +++G P + FK N + +V V +N C E+ + VCNL IN Sbjct: 399 AWDSGDPGLIFKSNMNASNSLLYVNVDGDRYVWFGTNPCAEVPG----ADKDVCNLTHIN 454 Query: 607 LLAHFAN-----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 L+ D+ LA T R VR LD+ +DI+ ++ ++ R Sbjct: 455 LVKFVKEGCSGRTLEEKLECIDWAGLAETARVGVRFLDDAVDISTTGMKDVDETYRKIRK 514 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG+MG L L IPYAS +AV + + + +I +A+ S ELA+ERG + F S Sbjct: 515 IGLGVMGLAEMLIKLEIPYASWDAVTLVNRVLAWIYLNALDESAELARERGPFKYFHQSD 574 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK--------------------- 754 + +GV P+ R + + EL R+K Sbjct: 575 YARGVIPVLKYQDFVWSR-WERVRAAYPPEYRELGDRLKAITYETRRWLDAMAKRFGKPT 633 Query: 755 --------TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 G+RNS M++APT + + G + ++P + ++++ G Sbjct: 634 LAELSEKVKGGVRNSVVMSVAPTGRTSILAGTTSGVEPVFALAFLRNVTVGTLVEYYWPG 693 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 V L+ R LW + ++ G + + +P+D+K + ATA EI W + + Q+W Sbjct: 694 VEYLRARGLWTPEVRRAVEES-GMLRDAP-VPEDVKHLLATAMEIHWAWHVLMQASAQQW 751 Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT---------SVEKSTL 916 +DQ S + + + + + + AW +G+K R +S + K L Sbjct: 752 VDQGISKTINMPANATKDDVYWAFALAWALGVKGITVYRDKSKSVQVIYTGIKQEIKKKL 811 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTS--DTEC 950 + + + S + D C Sbjct: 812 ADTKIVVKPLSLDATISDAAEQVKLKALEEGKDPYC 847 Score = 41.8 bits (96), Expect = 0.62, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 15/94 (15%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNK 88 +V+K NG V F P K+ R+I +A ++ V+ + + V R + + Sbjct: 2 YRVLKLNGSVEPFQPEKLRRSIERA---------AQDAGVE--VDGAADIKVERDVGSWE 50 Query: 89 SALIVHIEDIQDQVECSLMQSGHHKITREYVLYR 122 A +VH+E ++ ++ + ++ + ++L R Sbjct: 51 LADLVHVE----LLKKAIERPELAEVAKSHLLGR 80 >gi|269839439|ref|YP_003324131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] gi|269791169|gb|ACZ43309.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] Length = 598 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 173/631 (27%), Positives = 280/631 (44%), Gaps = 84/631 (13%) Query: 292 AFEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMG------LALKETEKEKRAVEFYN 344 L +L +RY IE P F RVA L ++ A FY Sbjct: 5 KLSTNALIVLEERYLRRNAKLEIIETPAEMFWRVARAVADADALYGPRSQVAATAERFYQ 64 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 ++ F+ ++PTL N+GT Q +CF+ V D L GIF L+ A++ + GG G + Sbjct: 65 AMAHLEFLPNSPTLMNAGTPSSQCMACFVLPVEDSLEGIFDTLKLAALIQQTGGGTGFSF 124 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G +H T G S G + F+ + N + QG KR+GA L H DV EF+ Sbjct: 125 SRLRPRGDVVHSTGGISSGAVSFMMLYNAMTETIKQGSKRRGANMGILRVDHPDVREFVT 184 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ DRR ++ N + + D FM+ + + + L +P + Sbjct: 185 SKR----DRRALNNFNISVGVTDEFMRAIEKGEKYPLVNPRD------------------ 222 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 V+ A +W ++ +++G P + D N ++P +H+G + ++N Sbjct: 223 ---------RSVWEHEDARRIWELIIQEAWDSGEPGLVALDTINRQNPTKHLGEIEATNP 273 Query: 585 CTEITLNSSSEETAVCNLGSINLLAH----FANNQFDYDKLASTIRTAVRVLDNVIDINC 640 C E L+ C LGSINL A Q D+ KL + V LDNVIDIN Sbjct: 274 CAEEPLHPY----EACCLGSINLNAVVTGPPEQRQLDWHKLGELVDLGVHFLDNVIDINH 329 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + + +R IGLG+MG+ L L +PY S EA+ +A+E M F+ A+ ASV+ Sbjct: 330 YPDPRIEDICRRNRRIGLGVMGWADLLFQLGVPYDSEEALSLAEELMGFVEDRAVEASVK 389 Query: 701 LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 LA+ RG + ++ GS +D+ P MRN Sbjct: 390 LAERRGVFPNYPGSDYDRRGGPR----------------------------------MRN 415 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT--VVNSFLVNELKQRDLWDE 818 + IAPT TI I S I+P + Y + + G ++ + E ++R + D+ Sbjct: 416 ATTRTIAPTGTIGIIANCSAGIEPLFALTYTRRALGGRELKQEIHPVFLEEARRRGVLDD 475 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + G + N+ +P+DL+++ ATA EI P W + + Q+ +D S + L Sbjct: 476 HLREHVVAT-GRVRNLPTLPEDLRRVFATALEISPEWHVRMQATFQRHVDNGVSKTINLP 534 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 E + + ++ YR A+ +G K R S Sbjct: 535 QEATPEDVESAYRLAYELGCKGITVYRYGSR 565 >gi|154269831|ref|XP_001535822.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1] gi|150409470|gb|EDN04916.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1] Length = 524 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 155/451 (34%), Positives = 239/451 (52%), Gaps = 35/451 (7%) Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 RV +N WTLF P+E L D+YG EFE YE YE+ E + + + A LW +L Sbjct: 1 RVEKNGEWTLFCPNEAPGLADVYGDEFEALYEKYEK-----EGRGKKTVKAQKLWYAILE 55 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG+P++ +KD CN +S Q+++G + SSNLCTEI S +E AVCNL SI L Sbjct: 56 AQTETGNPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFV 115 Query: 612 ANNQ--FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + +D+ KL + VR L+ +ID N + +E+AK+SN HR I G+ G A Sbjct: 116 DPIRGEYDFGKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLA 175 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L +P+ SPEA ++ + E I ++AS ELA+ G YS+++GS QG+ D + Sbjct: 176 LRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKVDGPYSTYEGSPVSQGILQYDMWNVT 235 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 T WD LK+ + G I G ++ +P N+ Sbjct: 236 P----------TDLWDWDSLKQDIAKHG-----------------ILGFNECFEPYTSNI 268 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + ++G+F +VN +L+ +L LW + M + + GSI NI IP D+K ++ T + Sbjct: 269 YSRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVW 328 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSA 908 EI +++ A+ R +IDQ+QSLN++L EP+ K+ ++ W +GLKT YYLR+ +A Sbjct: 329 EISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAA 388 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 ++ + T+ K+ V N + G Sbjct: 389 SAPIQFTVDQEQLKVADTNVARVNGALKKRG 419 >gi|68171691|ref|ZP_00545050.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|88658153|ref|YP_507276.1| ribonucleotide-diphosphate reductase subunit alpha [Ehrlichia chaffeensis str. Arkansas] gi|67998883|gb|EAM85576.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|88599610|gb|ABD45079.1| ribonucleoside-diphosphate reductase, alpha subunit [Ehrlichia chaffeensis str. Arkansas] Length = 595 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 201/680 (29%), Positives = 299/680 (43%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + YERD G +L DRY L E Q F+R++ + A Y+ Sbjct: 6 VDYERDNNLTAFGKAVLSDRYLLEN-----EDYQQLFVRISEYYSDNPE----HAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSQLWFMPATPILSNGGTNRGLPVSCFLNETEDSLRGIVNLWNENVWLASKGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + G +GK+ G+IPF+ V N +A++QG R+G+ YL WH ++EEFLD Sbjct: 117 GNLRSIGEKVRG-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVWHPEIEEFLD 175 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 LRK TG D R+ +++ + + FMK V + W L SP + Sbjct: 176 LRKPTGGDPNRKALNIHHGVVLSNKFMKCVENDEPWDLISPKDQ---------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V I A +W K+LT ETG P+I F D + P+ + + Sbjct: 220 -----------SVLFTIKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIK 268 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV----I 636 SNLCTEITL + + L + + + I +R LDNV I Sbjct: 269 MSNLCTEITLTTGYDHLNKSRTAICCLASLNLEYYEQWKDNSLFIEDVMRFLDNVLTDFI 328 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + +E+AK S R+IG+G+MGF S L IP+ S A + I HA + Sbjct: 329 EKAPSEMERAKYSAMRERSIGVGVMGFHSFLQSKMIPFESVAATIWNKKIFSHIRKHADA 388 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS +A E+G+ +D+ R Sbjct: 389 ASYNIAMEKGSC--------------LDAQDAGIVER----------------------- 411 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 N ++IAPTA+I+ I G S I+P N++ ++G F V N FL LK + Sbjct: 412 ---FVNKLSIAPTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLKLKGK 468 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 +E + S + ++GS+ +++ + ++ K I TA+E+D W+IE S R K+I QAQS+N+ Sbjct: 469 DNEQVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNI 528 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW GLK+ YY RS+S +K + ++ + Sbjct: 529 FLPANVHKRYLHKIHFLAWRKGLKSLYYCRSKSIQRADKVSHGALEKSIEQYKQITN--- 585 Query: 935 THSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 586 ----------FDYNECLSCQ 595 >gi|314121809|ref|YP_004063928.1| NrdA ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage vB_EcoM-VR7] gi|313151566|gb|ADR32622.1| NrdA ribonucleoside-diphosphate reductase subunit alpha [Enterobacteria phage vB_EcoM-VR7] Length = 751 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 186/796 (23%), Positives = 327/796 (41%), Gaps = 70/796 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G F+ +++ ++ +C G ++ + ++ DG++ D++T +I Sbjct: 1 MQVQKSSGVSQDFDGQKIIKVLSWSCEG-TNIDPYELYETIKPHLRDGMTTRDIQTVIIK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S LI +EP+Y V A+ + LR++V + + + + EG Sbjct: 60 VSAGLISVEEPDYQYVAAKATMFALRKDVYGQFEPR-----------SFIDQISYCVNEG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L S ++ YL + +K+ERDF Y G L ++Y G E PQ Sbjct: 109 KYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K FY+ +S+ TP + + T Q SSC + D L Sbjct: 169 MAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADSL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R G+ I K GVIPF K + +Q Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + +L M+R+ +N T Sbjct: 289 GGIRGGAATAYYPLWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYIT 348 Query: 501 LFSPDEV----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP E + +F YE E+ + ++I A L+ +T T Sbjct: 349 LFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK----KRIKAKDLFELFMTERSGT 404 Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSS--SEETAVCNLGSINLLAHFAN 613 + F D N +P + + SNLC EI + ++ + E A L +++ + Sbjct: 405 ARVYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSAFVLDSF 464 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + D DK+ VR LDN++D + +++A K R +G+G+ + + L Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQGYPVKEALK-AKKRRNLGVGVTNYAAWLASNFAS 523 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 YA +A ++ E E + + I AS++LA+E+G + + W +G PID + Sbjct: 524 YA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPIDWYN---KKI 578 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D++A W +L++ + G+RNS A+ P + + + + I+P + +K Sbjct: 579 DQIAAPNYV-CDWAQLREDLVAYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + G F V + + L+D A + K + K + T Sbjct: 638 SKEGSFNQVVPNIE---HNKGLYDYAWVLAKKGN---------------KPYLT------ 673 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + KW+ Q+ S N Y D + + W G K YY +R Sbjct: 674 -----MVAIMLKWVCQSASANTYYDPQIFPKGKVPMSVMLDDLMYFWYFGGKNLYYHNTR 728 Query: 907 SATSVEKSTLKGVDGK 922 + + ++ + Sbjct: 729 DGSGTDDYEIEAPKAE 744 >gi|218778781|ref|YP_002430099.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfatibacillum alkenivorans AK-01] gi|218760165|gb|ACL02631.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfatibacillum alkenivorans AK-01] Length = 724 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 174/661 (26%), Positives = 290/661 (43%), Gaps = 79/661 (11%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343 +F L +L RY NG IE P+ RVA +A + + ++ A +FY Sbjct: 3 LSFSSSALVVLKKRYLKKDKNGRVIESPEKMLQRVADSVARADKDYDETADIQALAAQFY 62 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +L+S F+ ++PTL N+G R QLS+CF+ V D + IF +L+ AM+ K GG G Sbjct: 63 DLMSKGWFIPNSPTLMNAGRRLGQLSACFVLPVEDSIESIFDSLKHTAMIHKSGGGTGFS 122 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ VR + T G S G I F+ V + V QGG R+GA A L H D+EEF+ Sbjct: 123 FSRVRPANDKVLSTAGVSSGPISFMAVFDAATETVKQGGTRRGANMAILRVDHPDIEEFI 182 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + DD + N + + FM+ + + + L +P + Sbjct: 183 ACK----DDPAFLQNFNISVGLTQEFMEALEKGGDYELVNPRTRNS-------------- 224 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + ++A ++ ++ +++G P I F D N +P +G + ++N Sbjct: 225 -------------VKTLNAPKIFDMIVNSAWQSGEPGIIFLDRINEANPTPALGEIEATN 271 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C E L CNLGSINL + D D+L + I TAV LDNV++IN + + Sbjct: 272 PCGEQPLLPY----ESCNLGSINLGKMAEGGKLDKDRLKAVIHTAVHFLDNVVEINKYPL 327 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++ K+ R +GLG+MGF L L +PY S EAV +A E M IS + AS +L + Sbjct: 328 KEIKEQTLATRKVGLGVMGFADLLIKLGVPYDSEEAVAMAHEVMSLISEESKKASAQLGE 387 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 RG + ++ GS++D+ P MRN+ Sbjct: 388 ARGNFPAYAGSMYDKPETPH----------------------------------MRNATT 413 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMIS 822 +APT TI+ I S I+P + Y + + G+ + K++ + E + Sbjct: 414 TTLAPTGTISIIANASSGIEPIFAVAYTRRVLDGERLHEFHPLFEEMAKEQGFFTEDLAK 473 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 ++ +GSI + IP +++++ T+ +I P W + + QK+ D A S + + Sbjct: 474 NIAL-EGSIQEMTNIPKEVRRLFKTSHDISPEWHVRIQAAFQKYTDNAVSKTVNFPHSAT 532 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 + ++ +++ A G K R S S +G + + G+ Sbjct: 533 REDVEKVFKLARETGCKGVTIYRDGSRDHQVLSVASRSEGPRPTGELAPRARPIRTHGVT 592 Query: 942 S 942 Sbjct: 593 E 593 >gi|255003305|ref|ZP_05278269.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. Puerto Rico] gi|255004431|ref|ZP_05279232.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. Virginia] Length = 595 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 191/680 (28%), Positives = 291/680 (42%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD +L DRY L E Q F+RV+ + + A Y+ Sbjct: 6 VDRTRDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSKLWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + +GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 117 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 175 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ + D FM+ V Q+ W L SP + Sbjct: 176 IRKPTGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD----------------- 218 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A LW K+LT ETG P++ F D N P + V Sbjct: 219 ----------KCVISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVK 268 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEITL + + L + + I +R LDNV+ Sbjct: 269 MSNLCTEITLATGEDHLGKSRTAICCLASLNLEYYDMWSTEPMFIEDVMRFLDNVLTDFI 328 Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + IE+AK + R+IG+G+MGF S L +P+ S A + E I A Sbjct: 329 NKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADE 388 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA E+G D+I R Sbjct: 389 VSHKLALEKGPCP--------------DAIDANKMER----------------------- 411 Query: 757 GMRNSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 + ++IAPTA+I+ I G + I+P N++ ++G F V N FL L+ + L Sbjct: 412 ---FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGL 468 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QAQS+N+ Sbjct: 469 DNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 528 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW G+K+ YYLRS+S +K Sbjct: 529 FLPAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADKV-------------SHVHVGQ 575 Query: 935 THSLGIPSSCTSDTECEVCQ 954 S + EC CQ Sbjct: 576 AVSPQRQITNFDYDECLACQ 595 >gi|330998672|ref|ZP_08322402.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella excrementihominis YIT 11859] gi|329576533|gb|EGG58041.1| ribonucleoside-diphosphate reductase, alpha subunit [Parasutterella excrementihominis YIT 11859] Length = 591 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 183/683 (26%), Positives = 284/683 (41%), Gaps = 102/683 (14%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 + ++ ERD + + L + Y + PQ F VA A A Sbjct: 1 MGIEIDLERDSLLGEVSRKRLRESYMKEEE----QSPQERFATVAETFASNPA----HAQ 52 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 Y+ S STP L ++ SCF + D G+ L E L+ GG+ Sbjct: 53 RIYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYMQDTAEGLVNTLSEVNWLSMLGGGV 112 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G I + KS GV+P LK+ + +A QG R+G+ A+L+ H D+ Sbjct: 113 GIHVD--------IRSADDKSVGVMPHLKIYDAACLAYRQGRTRRGSYAAFLDVDHPDII 164 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 +FL++RK TGD RT +++ I D FM+ + ++ + D +E+ Sbjct: 165 QFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS-----MVNADADDS-------WEL 212 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVG 577 + +V +SA +W+++L + +TG P+I F D N P Sbjct: 213 RDPHSH--------RVVEVVSARDIWQRILELRMQTGEPYIVFIDAANRALPSWLSDKGL 264 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635 +H SNLCTEI L +S + TAVC L S+NL ++ I + LDNV Sbjct: 265 KIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDH-----WNTNEQFIPDVMEFLDNVLQ 319 Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 ID +++E+A+ S R+IG+G +GF + L IP S A I I Sbjct: 320 YFIDNAPNSVERARYSALRERSIGIGALGFHAYLQSKRIPIESVLAKSINYRMFSHIKEE 379 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 L ++RG K D G+ Sbjct: 380 CARGDEILCEKRGPCPDAK----DAGIP-------------------------------- 403 Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 R S+ A+AP A+ + I G S SI+P N+Y + +SG + N L+ L++ Sbjct: 404 ----RRFSHWNAVAPNASSSLIMGATSPSIEPIRANIYRQDTLSGAHIIKNKMLIPVLEE 459 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 L + + + + HDGS+ ++E +P ++ + TA EID WLI+ A+ RQ++IDQ QS Sbjct: 460 YGLNTDEVWTSITAHDGSVQHLEALPQVIRDVFKTAQEIDQRWLIDLAADRQEFIDQGQS 519 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 LNL+ + S L + AW +GLK+ YY RS +K K +L Sbjct: 520 LNLFFPADVSIAYLHACHFLAWKVGLKSLYYCRSDKLRKADKLGEKVERHRLEESINMRE 579 Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954 S C C+ Sbjct: 580 VLENSS------------CLACE 590 >gi|254995135|ref|ZP_05277325.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. Mississippi] Length = 595 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 190/680 (27%), Positives = 291/680 (42%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD +L DRY L E Q F+RV+ + + A Y+ Sbjct: 6 VDRTRDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 57 YMSKLWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 116 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + +GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 117 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 175 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ + D FM+ V Q+ W L SP + Sbjct: 176 IRKPTGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD----------------- 218 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A +W K+LT ETG P++ F D N P + V Sbjct: 219 ----------KCVISTVRARDMWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVK 268 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEITL + + L + + I +R LDNV+ Sbjct: 269 MSNLCTEITLATGEDHLGKSRTAICCLASLNLEYYDMWSTEPMFIEDVMRFLDNVLTDFI 328 Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + IE+AK + R+IG+G+MGF S L +P+ S A + E I A Sbjct: 329 NKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADE 388 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA E+G D+I R Sbjct: 389 VSHKLALEKGPCP--------------DAIDANKMER----------------------- 411 Query: 757 GMRNSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 + ++IAPTA+I+ I G + I+P N++ ++G F V N FL L+ + L Sbjct: 412 ---FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGL 468 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QAQS+N+ Sbjct: 469 DNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 528 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW G+K+ YYLRS+S +K Sbjct: 529 FLPAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADKV-------------SHVHVGQ 575 Query: 935 THSLGIPSSCTSDTECEVCQ 954 S + EC CQ Sbjct: 576 AVSPQRQITNFDYDECLACQ 595 >gi|308814594|ref|YP_003934868.1| aerobic NDP reductase large subunit [Shigella phage SP18] gi|308206186|gb|ADO19585.1| aerobic NDP reductase large subunit [Shigella phage SP18] Length = 751 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 186/796 (23%), Positives = 327/796 (41%), Gaps = 70/796 (8%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +++ G F+ +++ ++ +C G ++ + ++ DG++ D++T +I Sbjct: 1 MQVQKSSGVSQDFDGQKIIKVLSWSCEG-TNIDPYELYETIKPHLRDGMTTRDIQTVIIK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S LI +EP+Y V A+ + LR++V + + + + EG Sbjct: 60 VSAGLISVEEPDYQYVAAKATMFALRKDVYGQFEPR-----------SFIDQISYCVNEG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFF 321 L S ++ YL + +K+ERDF Y G L ++Y G E PQ Sbjct: 109 KYDPELLSSYSAEEITYLESRIKHERDFDLTYAGAMQLKEKYLVKDKTTGKIYETPQFAI 168 Query: 322 MRVAMGLALKET-EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L E ++ K FY+ +S+ TP + + T Q SSC + D L Sbjct: 169 MAIGMALHQDEPTDRLKHVCRFYDAVSTRQVSLPTPIMAGARTPTRQFSSCVVIEAADSL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R G+ I K GVIPF K + +Q Sbjct: 229 KSINKTANSIIEYISKRAGIGINVGMIRAEGSKIGMGEVKHTGVIPFWKHFQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA AY WH++VE L L+ N G + R M+ + +L M+R+ +N T Sbjct: 289 GGIRGGAATAYYPIWHLEVENLLVLKNNKGVEENRIRHMDYGVQLNNLMMERLAKNDYIT 348 Query: 501 LFSPDEV----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSP E + +F YE E+ + ++I A ++ +T T Sbjct: 349 LFSPHEAGGELYYSYFDNPDKFRELYEALEKDPTVRK----KRIKAKDVFELFMTERSGT 404 Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSS--SEETAVCNLGSINLLAHFAN 613 + F D N +P + + SNLC EI + ++ + E A L +++ + Sbjct: 405 ARVYPQFVDNVNDYTPFIRDKAPIRQSNLCCEIAIPTTDVNSEDAEIGLCTLSAFVLDSF 464 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + D DK+ VR LDN++D + +++A K R +G+G+ + + L Sbjct: 465 DWQDQDKINELAEVQVRALDNLLDYQGYPVKEALK-AKKRRNLGVGVTNYAAWLASNFAS 523 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 YA +A ++ E E + + I AS++LA+E+G + + W +G PID + Sbjct: 524 YA--DANDLTHELFERLQYGLIRASIKLAKEKGPCEYYSDTRWARGELPIDWYN---KKI 578 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D++A W +L++ + G+RNS A+ P + + + + I+P + +K Sbjct: 579 DQIAAPNYV-CDWAQLREDLVEHGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKE 637 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + G F V + + L+D A + G+ K + T Sbjct: 638 SKEGSFNQVVPNIE---HNKGLYDYA---WVLAKQGN------------KPYLT------ 673 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + KWI Q+ S N Y D + + W G K YY +R Sbjct: 674 -----QVAIMLKWICQSASANTYYDPQNYPKGKVPMSVMLDDLMYFWYFGGKNLYYHNTR 728 Query: 907 SATSVEKSTLKGVDGK 922 + + ++ + Sbjct: 729 DGSGTDDYEIEAPKAE 744 >gi|56416956|ref|YP_154030.1| ribonucleotide-diphosphate reductase subunit alpha [Anaplasma marginale str. St. Maries] gi|222475322|ref|YP_002563739.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma marginale str. Florida] gi|56388188|gb|AAV86775.1| ribonuclease-diphosphate reductase alpha chain [Anaplasma marginale str. St. Maries] gi|222419460|gb|ACM49483.1| ribonuclease-diphosphate reductase alpha chain (nrdA) [Anaplasma marginale str. Florida] Length = 606 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 191/680 (28%), Positives = 291/680 (42%), Gaps = 100/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + RD +L DRY L E Q F+RV+ + + A Y+ Sbjct: 17 VDRTRDNNLTNFSKAVLSDRYLLDN-----EDYQQLFVRVSQYYSDNDE----HAQRLYD 67 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S FM +TP L N GT SCFL D L GI EN LA GG+G+ W Sbjct: 68 YMSKLWFMPATPILSNGGTTRGLPISCFLNETEDSLVGILNLWNENVWLASRGGGIGSYW 127 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G + +GK+ G+IPF+ V N +A++QG R+G+ YL H ++EEFLD Sbjct: 128 GNLRSIGEKVRS-SGKTSGIIPFIVVQNALTLAISQGSLRRGSSAVYLPVGHPEIEEFLD 186 Query: 465 LRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +RK TG D R+ +++ + D FM+ V Q+ W L SP + Sbjct: 187 IRKPTGGDPNRKALNIHHGVLLTDEFMQAVEQDKPWDLVSPKD----------------- 229 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVH 580 V + A LW K+LT ETG P++ F D N P + V Sbjct: 230 ----------KCVISTVRARDLWIKILTTRVETGEPYLVFVDTVNKHKPDIYKELGLEVK 279 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SNLCTEITL + + L + + I +R LDNV+ Sbjct: 280 MSNLCTEITLATGEDHLGKSRTAICCLASLNLEYYDMWSTEPMFIEDVMRFLDNVLTDFI 339 Query: 641 H----TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + IE+AK + R+IG+G+MGF S L +P+ S A + E I A Sbjct: 340 NKAPPDIERAKYAAMRERSIGVGVMGFHSFLQSKMVPFESLAAAVWNKKIFEHIKRQADE 399 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 S +LA E+G D+I R Sbjct: 400 VSHKLALEKGPCP--------------DAIDANKMER----------------------- 422 Query: 757 GMRNSNCMAIAPTATIANICGVS-QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 + ++IAPTA+I+ I G + I+P N++ ++G F V N FL L+ + L Sbjct: 423 ---FVHKLSIAPTASISIISGSTSPGIEPYAANVFTHKTLTGSFVVRNKFLQRLLESKGL 479 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ + S + ++GS+ +++ + + K + TA+E+D W++E +S R ++ QAQS+N+ Sbjct: 480 DNDQVWSSISTNEGSVQHLDFLTEREKLVFKTAYEMDQRWIVEHSSDRAPYVCQAQSVNI 539 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 +L + L I+ AW G+K+ YYLRS+S +K Sbjct: 540 FLPAGVHKRYLHKIHFLAWRKGVKSLYYLRSKSVQKADKV-------------SHVHVGQ 586 Query: 935 THSLGIPSSCTSDTECEVCQ 954 S + EC CQ Sbjct: 587 AVSPQRQITNFDYDECLACQ 606 >gi|255028523|ref|ZP_05300474.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes LO28] Length = 620 Score = 376 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 225/654 (34%), Positives = 323/654 (49%), Gaps = 76/654 (11%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE--TEKEKR 338 + E+D F Y GL +L RY + E+PQ ++ +A+ L E ++ K Sbjct: 2 GKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERWLTIALYLMQNEPKEKRMKL 61 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 E Y LS+ + +TPTL N+G QLSSCF+ TV D L GI+ + + A ++K+ G Sbjct: 62 VEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGG 121 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G VR GA I G G S GVIP++K N+TAV+V+Q G+RKGA+ YL+ +H D Sbjct: 122 GVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKD 181 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 +E FLDLR N GD R R HD+ TA IPD+FM+ V + W LF P EV Y ++F Sbjct: 182 IESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDF 241 Query: 519 ------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 E + + E + + A+ + ++++ ETG+P++ ++D N +P Sbjct: 242 YDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNP 301 Query: 573 QQHVGVVHSSNLCTEITLNSSSE-------------------ETAVCNLGSINLLAHFAN 613 +H G+V+SSNLCTEI N S + VCNL S+NL Sbjct: 302 NKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVA 361 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + L I VR+LDNVID+N + +A +N +R+IGLG G+ L L +I Sbjct: 362 ---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIA 418 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 + S EA + ADE E I++ AI AS +LAQE+GAY FKGS W+ G Sbjct: 419 WDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTG-------------- 464 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + A + W EL K V G+RN+ +A+AP + A I G + SIDP Y Y + Sbjct: 465 EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEE 524 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 V+ L N+ P K + +D Sbjct: 525 KKDYRRPVIAPDL--------------------------NLSTYPYYEKGAYK----VDQ 554 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + RRQ+ +DQ+ S N Y+ KL ++ AW GLKTTYY+RS Sbjct: 555 FASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSN 608 >gi|303258317|ref|ZP_07344320.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderiales bacterium 1_1_47] gi|302858763|gb|EFL81851.1| ribonucleoside-diphosphate reductase, alpha subunit [Burkholderiales bacterium 1_1_47] Length = 591 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 183/683 (26%), Positives = 283/683 (41%), Gaps = 102/683 (14%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 + + ERD + + L + Y + PQ F VA A A Sbjct: 1 MGIEFDLERDSLLGEVSRKRLRESYMKEEE----QSPQERFATVAETFASNPA----HAQ 52 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 Y+ S STP L ++ SCF + D G+ L E L+ GG+ Sbjct: 53 RIYDYASKHWLSFSTPILSFGRSKKGLPISCFEVYMQDTAEGLVNTLSEVNWLSMLGGGV 112 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G I + KS GV+P LK+ + +A QG R+G+ A+L+ H D+ Sbjct: 113 GIHVD--------IRSADDKSVGVMPHLKIYDAACLAYRQGRTRRGSYAAFLDVDHPDII 164 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 +FL++RK TGD RT +++ I D FM+ + ++ + D +E+ Sbjct: 165 QFLEMRKPTGDQNLRTLNLHHGVNISDKFMRLIEKS-----MVNADADDS-------WEL 212 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVG 577 + +V +SA +W+++L + +TG P+I F D N P Sbjct: 213 RDPHSH--------RVVEVVSARDIWQRILELRMQTGEPYIVFIDAANRALPSWLSDKGL 264 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV-- 635 +H SNLCTEI L +S + TAVC L S+NL ++ I + LDNV Sbjct: 265 KIHGSNLCTEIFLPTSEKRTAVCCLSSLNLEYFDH-----WNTNEQFIPDVMEFLDNVLQ 319 Query: 636 --IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 ID +++E+A+ S R+IG+G +GF + L IP S A I I Sbjct: 320 YFIDNAPNSVERARYSALRERSIGIGALGFHAYLQSKRIPIESVLAKSINYRMFSHIKEE 379 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 L ++RG K D G+ Sbjct: 380 CARGDEILCEKRGPCPDAK----DAGIP-------------------------------- 403 Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 R S+ A+AP A+ + I G S SI+P N+Y + +SG + N L+ L++ Sbjct: 404 ----RRFSHWNAVAPNASSSLIMGATSPSIEPIRANIYRQDTLSGAHIIKNKMLIPVLEE 459 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 L + + + + HDGS+ ++E +P ++ + TA EID WLI+ A+ RQ++IDQ QS Sbjct: 460 YGLNSDEVWTSITAHDGSVQHLEALPQVIRDVFKTAQEIDQRWLIDLAADRQEFIDQGQS 519 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 LNL+ + S L + AW +GLK+ YY RS +K K +L Sbjct: 520 LNLFFPADVSIAYLHACHFLAWKVGLKSLYYCRSDKLRKADKLGEKVERHRLEESINMRE 579 Query: 932 NSSTHSLGIPSSCTSDTECEVCQ 954 S C C+ Sbjct: 580 VLENSS------------CLACE 590 >gi|13540923|ref|NP_110611.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma volcanium GSS1] Length = 767 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 206/838 (24%), Positives = 351/838 (41%), Gaps = 116/838 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMY--DGLSESDLETA 201 ++ DGT++ F ++ M + +A +++ ++ + + + + + + ++ Sbjct: 5 VVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRDAETLADKVVERLKNIERPTVEQIQDI 64 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + T + + V L RE ++A E + L + + Sbjct: 65 VEDVLMTSKIEGKIFTDVAKS---YILYRE--------KRRAIREEKESLGVKDDLKLTL 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315 VK + D D + + R A ++ LYD G E Sbjct: 114 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIIEALYDFMEYKKTGKIPENAEKIG 173 Query: 316 ---MPQAFFMRVAMGLALKETEKEKRAVEF------------------YNLLSSFHFMCS 354 + Q +R A ++ E EF ++SS F+ + Sbjct: 174 KVSLTQEEVLRRAFNYMKEDGIMEGTFEEFMDFLSTKGTSAHLYINKFEEMMSSLDFVPN 233 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG G ++ +R + Sbjct: 234 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 293 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + T + QGGKR+GA L H D+ EF+ L K++ + Sbjct: 294 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFV-LSKDSENKVL 352 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 +++ + D F +++ + L +P Sbjct: 353 SNFNISVG--VTDEFFEKLDNDDYVDLINPRT---------------------------K 383 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 KV ++I A LW ++ ++T P + F D N ++P ++VG + S+N C E L Sbjct: 384 KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 442 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGSINL + DYD+L T+ A R LD+VID N +E+ KK R Sbjct: 443 ---ESCNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANKFPVEQIKKVTRMTR 499 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MGF L L +PY S EA+EIA++ M FI+ + AS LA+ERG + ++ GS Sbjct: 500 KIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQHLAEERGVFPAWYGS 559 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ K+ +K MRNS IAPT TI+ Sbjct: 560 EWE--------------------------------KEGIK---MRNSTTTTIAPTGTISI 584 Query: 775 ICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S SI+P + +V+ ++G + VN + + L+ E ++ + G++ N Sbjct: 585 IAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEELMRKVAET-GNLEN 643 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 I I +++KKI TA E+DP W + + Q++ D S + + + + + + YR A Sbjct: 644 I-EINEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKSDATREDIAKAYRMA 702 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 + K R +S T + K V + + + T D C Sbjct: 703 KDLHCKGITVYRDKSKTVQVLTAGTTETKKTEEKEVIELVTKMPDKYLKIDSTFDPAC 760 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 34/171 (19%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ KI+ AI KA ++V+ + L ++ V RL + Sbjct: 4 EVVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRD-------AETLADKVVERLKNIER- 55 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +E IQD VE LM S + + Y+LYRE+R +R + + Sbjct: 56 ---PTVEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIREEKESLGVKDDLKLT 112 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 L + V EA L+D KI+ ET + M+ ++ Sbjct: 113 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 145 >gi|323450453|gb|EGB06334.1| hypothetical protein AURANDRAFT_54285 [Aureococcus anophagefferens] Length = 555 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 158/485 (32%), Positives = 256/485 (52%), Gaps = 20/485 (4%) Query: 141 IAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDL 198 ++++ +G + ++ +++ C G + + + + +YDG++ +L Sbjct: 3 ADDDMQVVKRNGKKETVRYDKITSRIKKLCYGFDAKYIKPNQITQKVIQGVYDGVTTHEL 62 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 + ++ + + P+++ + AR + L + T +K L+ + Sbjct: 63 DELAAQTTAYMATQHPDFSVLAARISVSNLHKSTDKTFSDVVEK--------LHKHVHPK 114 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 + + + + + Y+RDF ++Y G + L Y + ++G+ E PQ Sbjct: 115 TKKPAALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFKTLERSYLMRLDGAIAERPQ 174 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV-P 377 MRVA+G+ + A E Y ++S F +TPTLFN+GT PQLSSCFL + Sbjct: 175 HMIMRVALGIHGDD---LAGAFETYEMMSQKMFTHATPTLFNAGTPRPQLSSCFLLAMKE 231 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + GI+ L+ A ++KY+GG+G +R ++I G+NG S G++P L+V NDTA Sbjct: 232 DSIEGIYDTLKRCAAISKYAGGIGLSVHNIRATDSYICGSNGTSNGIVPMLRVYNDTARY 291 Query: 438 VNQGGKRK-GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V+QGG+R+ G+ YLE WH D+E +LDL+KN G++ R D+ WIPDLFMKRV N Sbjct: 292 VDQGGRRRKGSFAIYLEPWHADIEMWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEAN 351 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 W+L P+E L D +G +FE YE YE E + I A LW +L ET Sbjct: 352 GFWSLMCPNECPGLADCHGAKFEALYERYEA-----EGCARKAIPAQQLWFAILDSQVET 406 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 G P++ +KD CN +S Q+H+G + SSNLCTEI ++ +E AVCNL SINL + + Sbjct: 407 GTPYMLYKDACNGKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLGSEVSGATH 466 Query: 617 DYDKL 621 + +L Sbjct: 467 NSKRL 471 >gi|1657993|gb|AAB18239.1| ribonucleotide reductase [Thermoplasma acidophilum] Length = 857 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 204/839 (24%), Positives = 351/839 (41%), Gaps = 117/839 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMYD--GLSESDLETA 201 ++ DGT++ F ++ M + +A +++ ++ + + + D S +++ Sbjct: 5 VVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDAEQLADKVVARLKDKERPSVEEIQDV 64 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + T + V L RE ++A E + + + + Sbjct: 65 VEDVLMTSKIDGKTFTDVAKS---YILYRE--------KRRAIREEKELMGVKDDLKLTL 113 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315 VK + D D + + R A ++ LYD G E Sbjct: 114 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIVEALYDYIKYKKTGKVPENAEIIG 173 Query: 316 --MP-QAFFMRVAMGLALKETEKE------------------KRAVEFYNLLSSFHFMCS 354 P Q +R A G ++ E F ++SS F+ + Sbjct: 174 KVSPTQEEVLRRAFGYMKEDGIIEGTFEEFMDFIQTKGTSAGHYINRFEEVMSSLDFVPN 233 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG G ++ +R + Sbjct: 234 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 293 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + T + QGGKR+GA L H D+ EF+ L K++ + Sbjct: 294 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFI-LSKDSENKVL 352 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 +++ + D F ++ + L +P Sbjct: 353 SNFNISVG--VTDDFFDKLDNDDYVDLVNPRT---------------------------K 383 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K+ ++I A +W ++ ++T P + F D N ++P ++VG + S+N C E L Sbjct: 384 KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 442 Query: 595 EETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 CNLGSINL + + D+D+L T+ TA R LD+VID N +E+ KK Sbjct: 443 ---ESCNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMT 499 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+MGF L L IPY S EA+EI ++ M FI+ + AS LA+ER + ++ G Sbjct: 500 RKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQALAEERAVFPAWYG 559 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ K+ +K MRNS IAPT TI+ Sbjct: 560 SEWE--------------------------------KEGIK---MRNSTTTTIAPTGTIS 584 Query: 774 NICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I G S SI+P + +V+ ++G + VN + ++ ++ E ++ + G++ Sbjct: 585 IIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEELMRQVAET-GNLE 643 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 N++ I +++KKI TA EIDP W + + Q++ D S + + + + + + YR Sbjct: 644 NVK-INEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINMRSDATREDIARAYRM 702 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 A + K R +S T + K V + + + T D C Sbjct: 703 AKDLHCKGITVYRDKSKTVQVLTAGTAETKKPEEKEVIELVTKMPDKYLKIDSTFDPAC 761 Score = 130 bits (327), Expect = 9e-28, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 34/171 (19%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ +KI+ AI KA ++V+ + L ++ V RL + Sbjct: 4 EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKD-------AEQLADKVVARLKDKER- 55 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +E+IQD VE LM S + + Y+LYRE+R +R + + Sbjct: 56 ---PSVEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIREEKELMGVKDDLKLT 112 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 L + V EA L+D KI+ ET + M+ ++ Sbjct: 113 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 145 >gi|14324305|dbj|BAB59233.1| ribonucleotide reductase [Thermoplasma volcanium GSS1] Length = 769 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 206/838 (24%), Positives = 351/838 (41%), Gaps = 116/838 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMY--DGLSESDLETA 201 ++ DGT++ F ++ M + +A +++ ++ + + + + + + ++ Sbjct: 7 VVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRDAETLADKVVERLKNIERPTVEQIQDI 66 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + T + + V L RE ++A E + L + + Sbjct: 67 VEDVLMTSKIEGKIFTDVAKS---YILYRE--------KRRAIREEKESLGVKDDLKLTL 115 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315 VK + D D + + R A ++ LYD G E Sbjct: 116 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIIEALYDFMEYKKTGKIPENAEKIG 175 Query: 316 ---MPQAFFMRVAMGLALKETEKEKRAVEF------------------YNLLSSFHFMCS 354 + Q +R A ++ E EF ++SS F+ + Sbjct: 176 KVSLTQEEVLRRAFNYMKEDGIMEGTFEEFMDFLSTKGTSAHLYINKFEEMMSSLDFVPN 235 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG G ++ +R + Sbjct: 236 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 295 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + T + QGGKR+GA L H D+ EF+ L K++ + Sbjct: 296 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFV-LSKDSENKVL 354 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 +++ + D F +++ + L +P Sbjct: 355 SNFNISVG--VTDEFFEKLDNDDYVDLINPRT---------------------------K 385 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 KV ++I A LW ++ ++T P + F D N ++P ++VG + S+N C E L Sbjct: 386 KVTKRIKAKELWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 444 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGSINL + DYD+L T+ A R LD+VID N +E+ KK R Sbjct: 445 ---ESCNLGSINLSKYVNGKDIDYDRLRETVWLATRFLDDVIDANKFPVEQIKKVTRMTR 501 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MGF L L +PY S EA+EIA++ M FI+ + AS LA+ERG + ++ GS Sbjct: 502 KIGLGVMGFADLLIKLEVPYNSWEALEIAEKVMSFINEESHKASQHLAEERGVFPAWYGS 561 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 W+ K+ +K MRNS IAPT TI+ Sbjct: 562 EWE--------------------------------KEGIK---MRNSTTTTIAPTGTISI 586 Query: 775 ICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G S SI+P + +V+ ++G + VN + + L+ E ++ + G++ N Sbjct: 587 IAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRSLGLYSEELMRKVAET-GNLEN 645 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 I I +++KKI TA E+DP W + + Q++ D S + + + + + + YR A Sbjct: 646 I-EINEEIKKIFVTAHEVDPQWHVLMQATFQRYCDSGVSKTINMKSDATREDIAKAYRMA 704 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 + K R +S T + K V + + + T D C Sbjct: 705 KDLHCKGITVYRDKSKTVQVLTAGTTETKKTEEKEVIELVTKMPDKYLKIDSTFDPAC 762 Score = 129 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 34/171 (19%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ KI+ AI KA ++V+ + L ++ V RL + Sbjct: 6 EVVKRDGTVVPFEKGKIAMAIYKAMLSVKNGSMRD-------AETLADKVVERLKNIER- 57 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +E IQD VE LM S + + Y+LYRE+R +R + + Sbjct: 58 ---PTVEQIQDIVEDVLMTSKIEGKIFTDVAKSYILYREKRRAIREEKESLGVKDDLKLT 114 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 L + V EA L+D KI+ ET + M+ ++ Sbjct: 115 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 147 >gi|323650973|ref|YP_004243616.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. natto] gi|323461613|dbj|BAJ77029.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. natto] Length = 789 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 207/823 (25%), Positives = 362/823 (43%), Gaps = 110/823 (13%) Query: 145 LKIMMDD-----GTLISFNSKRLEMIVEEACSGLQ--DVSSKIVLSETYKNM--YDGLSE 195 + +++ D + F+ +RL ++ ++ + + +S+ + + + + Sbjct: 1 MTVVIKDKNKKRERRMEFDRERLISFIKRGFENIEVNPTTKESYISKVVRTIERREEIES 60 Query: 196 SDLETALIFSSRTLIEK--------------EPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 D+ LI ++ L N+ + L++L + K + Sbjct: 61 KDITKILIQNALVLTNDIKNDSGYVSPDYLVNTNWNRFARYVKLQELYKRAS-----KNR 115 Query: 242 KATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL 301 E + E+G+ + + +LV N + ERD F++ GL L Sbjct: 116 SYDSKEKYGDFYGLIVTLTEKGLYTPDILANYTREELVKAGNSIVPERDELFDFAGLHSL 175 Query: 302 YDRYFLH-INGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLF 359 RY + + S E+PQ FM A+ L + E ++ ++A+E Y LS+ + +TPTL Sbjct: 176 SGRYCVKDFDKSVYELPQERFMIAALHLMMPEEKDRVEKAIELYWALSNLYLTLATPTLM 235 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N+G LSSCF+ T D L GIF + + +K G+G + +R G+ I G G Sbjct: 236 NAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFGKLRATGSDIRGHKG 295 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 + G++ ++K ++TAV+V+Q G+R GAV YL+ WH D+E+F+DLR NTGD +R +++ Sbjct: 296 AASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDLRLNTGDKSKRAYNV 355 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF---------------EIAYEN 524 T IPD FM++V + + LF P E+ ++F + A+ Sbjct: 356 FTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLGEKETPNPIDHAWTY 415 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + R++ A+ L ++ + ETG P++ ++D N +P H G+++SSNL Sbjct: 416 HYYLCVDNNNLDKRRVPAIELKKRYMKAQLETGIPYMFYRDTVNRNNPNSHSGMIYSSNL 475 Query: 585 CTEITLNSSSE---------------------ETAVCNLGSINLLAHFANNQFDYDKLAS 623 C+EI N S + CNL S+ + + + Sbjct: 476 CSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNRTEKDGVTE-----R 530 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 I+ +R LDNVI + + +A+ +N +RA+G G G + L I + S +A+E Sbjct: 531 VIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQEGIMWDSEQAIEYI 590 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 + E I + I AS L +E+G+Y F+GS W G + + Sbjct: 591 SKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG--------------EWFEERDLNS 636 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W E+K+ MRN AIAPT + I G + IDP + +Y + ++ Sbjct: 637 PEWLEVKELASKY-MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVIYFERKKDFHLPILV 695 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L K + M + ++ K++ A +W I+ + R Sbjct: 696 PELNQ--KTWFFYKPTMKMEY--------------ENEKQL---AH----LWAIKHNAAR 732 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK++DQA S N Y+ + K ++ + W G+KT+YY RS Sbjct: 733 QKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 775 >gi|195953681|ref|YP_002121971.1| ribonucleoside-diphosphate reductase, alpha subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933293|gb|ACG57993.1| ribonucleoside-diphosphate reductase, alpha subunit [Hydrogenobaculum sp. Y04AAS1] Length = 1005 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 227/643 (35%), Positives = 346/643 (53%), Gaps = 64/643 (9%) Query: 145 LKIMMDDGTLISFNSKRLEMIVE----------------------EACSGLQDVSSKIVL 182 ++++ G + ++ ++E L +++ ++ Sbjct: 1 MEVIKRSGAREKLDLLKIRTVLENALSLLKEWKTTKDISAQDIEEWTMEDLNEINIDEIM 60 Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 + N++DG+ + + ++ S T +P Y + LL+++ ++ +Y Sbjct: 61 EDIEINIFDGIETAAIFQHILHSLLTRAIDDPIYDAMARNVLLQRIYKQAFGGMYSP--- 117 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-DLVYLANDLKYERDFAFEYLGLQIL 301 + Y E F YI+ V+ LL E + + DL LA +L +RD ++ GL L Sbjct: 118 ------KKAYKELFIDYIDNAVELGLLDEKLASYYDLEMLALELVPKRDQLLKFNGLYNL 171 Query: 302 YDRYFLHI--NGSRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTP 356 DRY + G+ +E PQ F+MRVAMG+AL E E A+EFY+++SS F+ STP Sbjct: 172 MDRYLIKDLDTGNILEAPQWFWMRVAMGVALVEKTPEDRNHWAIEFYHMMSSMEFIPSTP 231 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 TLFNSGTR PQLSSCF+ DDL IF +++ ML K++GG+G T +R + I Sbjct: 232 TLFNSGTRFPQLSSCFVVDEEDDLSKIFETVKQVGMLNKHAGGVGLPATKLRAKDSIIRS 291 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 GKS G+IPFLK+ ++T AV+QGG+R+G+ A LE WH+DV +F+ ++ GDD +R Sbjct: 292 IQGKSSGIIPFLKIIDETITAVSQGGRRRGSALASLEPWHLDVFDFVRTKRKWGDDSQRF 351 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 ++ A ++ D FM+RV +N W LF P + L YGK+F Y R+A G+I+ Sbjct: 352 KNLKIALFLNDEFMRRVEENGDWYLFDPADCPKLVSTYGKKFSREYSKCIRKALSGKIR- 410 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 +KI AV L+++ + +TG PW TFKDP NIR P +H G + ++NLCTE L S+ + Sbjct: 411 HKKIKAVELFKEAIENTIQTGEPWYTFKDPINIRHPNKHTGTILTTNLCTEQLLVSTYDS 470 Query: 597 TAVCNLGSINLL--------------------------AHFANNQFDYDKLASTIRTAVR 630 CNLGS+ L +NN FD++K + IR A+R Sbjct: 471 IESCNLGSLVLPRALLTHFRVNEHAQPLNSSENGSKHTKFLSNNTFDWEKFKAVIRKAIR 530 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 LDNVID N + +E +K R IGLG MG+Q + L +P S EA+++ D+ E + Sbjct: 531 FLDNVIDANYYALEAVEKGTKQSRKIGLGFMGYQDMIEKLKLPVDSKEALKLLDKIGETM 590 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S+ AI SVELA+ERG Y +F GS W +G+ PID++ L R Sbjct: 591 SYVAIETSVELAKERGTYPNFDGSDWSKGILPIDTLEHLFRER 633 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 69/194 (35%), Positives = 108/194 (55%), Gaps = 2/194 (1%) Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+EL+++VK G+RN+ +APTATI+ I G SQS +P Y +Y ++N++G F VN Sbjct: 746 WEELREKVKQ-GIRNACQTTLAPTATISIIAGTSQSFEPYYALVYSRTNIAGRFLEVNEN 804 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + +LK+ LWD + D+ GSI +I+ IP ++K I+ TA+EID I+ A+ QK Sbjct: 805 FIRDLKKLGLWD-RLREDVLLQQGSIQDIKEIPQEIKDIYKTAYEIDTEVYIKQAAVLQK 863 Query: 866 WIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 WID + S NLY + +K+ IY +AW GLK TYY + E + + + Sbjct: 864 WIDSSISRNLYFNTRDPQKIMEIYLKAWKYGLKATYYAFMPAKIKTEGKYVHEDIKEPQS 923 Query: 926 VPVTDPNSSTHSLG 939 + + + Sbjct: 924 SQDKEEDKARALSA 937 Score = 40.6 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 13/80 (16%) Query: 29 VQVIKRNGGVTSFDPSKISRAIMKA--FMAVEGKGASRSIRVQDI----------IKNLT 76 ++VIKR+G D KI + A + S + + I + Sbjct: 1 MEVIKRSGAREKLDLLKIRTVLENALSLLKEWKTTKDISAQDIEEWTMEDLNEINIDEIM 60 Query: 77 EQTVTRLLQHNKSALIV-HI 95 E + ++A I HI Sbjct: 61 EDIEINIFDGIETAAIFQHI 80 >gi|283477830|emb|CAY73746.1| nrdA [Erwinia pyrifoliae DSM 12163] Length = 693 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 177/717 (24%), Positives = 278/717 (38%), Gaps = 69/717 (9%) Query: 209 LIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKAR 267 +I ++ P+Y + AR + LR++ M +E G Sbjct: 1 MISRDAPDYQYMAARLAIFHLRKKAYGQFEPPKLIDQVTRM-----------VEMGKYDP 49 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVA 325 L + + + + RD F Y ++ L +Y ++G E Q ++ VA Sbjct: 50 HLLTDYSAEEFEQMDGFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGDIYESAQFLYILVA 109 Query: 326 MGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 L + FY+ +S+F TP + T Q SSC L D L I Sbjct: 110 ACLFSGYPRATRLDYVKRFYDAISTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSI 169 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 G+G + +R LG+ I G G IPF K + +QGG Sbjct: 170 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGV 229 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA + WH +VE L L+ N G + R M+ + + +R+ + TLFS Sbjct: 230 RGGAATLFYPMWHREVESLLVLKNNRGVEGNRVRHMDYGVQLNKVMYQRLLKGEDITLFS 289 Query: 504 PDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 P +V L+D + EFE Y YE+ +++ + AV L+ M+ TG + Sbjct: 290 PSDVPGLYDAFFADQNEFERLYTQYEKDDSIRKLR----VKAVDLFSLMMQERASTGRIY 345 Query: 561 ITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQF 616 I D CN SP V SNLC EI L + + G I L Sbjct: 346 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPMQDVNDENGEIALCTLSAFNLGAIE 405 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D L AVR LD ++D + I AK+ R +G+G++ F L + Y+ Sbjct: 406 SLDDLQELATLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGVRYSD 465 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 A + ++ E I + + AS ELA E+GA F + + QG+ PID+ + Sbjct: 466 GSANILTHQTFEAIQYWLLKASNELAIEQGACPWFAETTYAQGIMPIDTYKKDLDAI--- 522 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS 796 N L W+ L++ VK G+RNS A+ P+ T + I + I+P ++ +K++ Sbjct: 523 -CNTPLLLDWEGLRESVKNHGLRNSTLSALMPSETSSQISNATNGIEPPRGHISIKASKD 581 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G V + ++ D+ +DG + Sbjct: 582 GILRQVVPEYERL-----KDNYELLWDMPNNDGYLQ------------------------ 612 Query: 857 IESASRRQKWIDQAQSLNLYLDE-------PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 QK++DQA S N D K+L A+ G+KT YY +R Sbjct: 613 --LVGVMQKFVDQAISSNTNYDPTRFANGRVPMKQLLKDLLTAYKFGVKTLYYQNTR 667 >gi|209972894|ref|YP_002300341.1| gp2.9 [Bacillus phage SPO1] gi|209871214|gb|ACI90970.1| gp2.9 [Bacillus phage SPO1] Length = 756 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 221/796 (27%), Positives = 352/796 (44%), Gaps = 117/796 (14%) Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225 +E G +D + ++ K + G D+ T + + P + + AR +L Sbjct: 14 LEFVLRGHEDSKVETYRTQVEKAIARG---EDINTITNLALVRVDIDTPEWNFIAARSIL 70 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + + + I G L E + ++ + + Sbjct: 71 FDLYYKAGQLRGDQNP-----------VQRIKELINNGQYGSFLLEKYTEDEINQAYSFI 119 Query: 286 KYERDFAFEYLGLQILYDRYFLHING-----SRIEMPQAFFMRVAMGLALKETE--KEKR 338 ERD ++ G+ +L DRY E+PQ ++ +A+ L E + Sbjct: 120 DTERDLLLDHSGIMMLNDRYLFKYKDSKGNMHPYELPQERWLTIALTLMQDEKPEKRMDL 179 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 + Y +LS+ + +TPT+ N+G QLSSCF+ TV D L I+ +++AM++K+ G Sbjct: 180 VKKAYWVLSNLYITVATPTMGNAGRPDGQLSSCFIGTVEDSLDNIYDNNKDSAMVSKFGG 239 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+G +R L ++I G GKSQGVIP++K +TA +V+Q G+RKGA+ YL+ WH D Sbjct: 240 GIGVYMGKIRSLNSYIRGMKGKSQGVIPWIKGLENTANSVDQLGQRKGAIAVYLDIWHKD 299 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR---------VTQNAGWTLFSPDEVSD 509 V EFL + N GD+RR+ D+ +PDLFM++ V +A W LF P EV Sbjct: 300 VMEFLQIGTNNGDERRKARDVFPGLCVPDLFMEKLQPNPETGKVDPDAKWYLFDPHEVRM 359 Query: 510 ----------LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHP 559 + F Y + ++ + + + L ETG P Sbjct: 360 VMGYSLEDSYDEEEGAGTFRKRYMECV----NSPLLSRTEVLVKDVAKAFMVSLMETGMP 415 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------------------ 595 ++ F+D N ++P +H G+++ SNLCTEIT N S Sbjct: 416 FMFFRDEVNRKNPNKHAGMIYCSNLCTEITQNMSPTVQVEEYVENEDTDEAMIVYKVKPG 475 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + VCNL S+NL + + L I VR+LDNVID+N ++A +N +RA Sbjct: 476 DYVVCNLSSVNLGKAYPSGH-----LEDIIDIQVRMLDNVIDVNNLPRKQATLTNKKYRA 530 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 IGLG G+ L + I + S E+VE AD+ E I++ A+ AS ++A+E+G Y +F+GS Sbjct: 531 IGLGTFGWHHLLAVSGIKWDSEESVEFADKVYEKIAYLALRASADIAKEKGTYRAFEGSD 590 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + G + +R + S WD LK+ G+RN++ +A+AP A I Sbjct: 591 FHTGDYF--------NIRGY--KSEGSEHDWDTLKEDCMNTGIRNAHVLAVAPNGNTALI 640 Query: 776 CGVSQSIDPSYQN--LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 G +Q ID Y +Y + V+ Sbjct: 641 AGSTQGIDAFYTGTGIYYEEKKDFKIPVIAP----------------------------- 671 Query: 834 IERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 + P + AF++ + I + RQK IDQ+ S N+Y+ + K + I Sbjct: 672 -DMSPKTFPYYWKSGAFDVSHEYTIRQNAMRQKHIDQSVSFNIYIKSDIKFKDILNIINT 730 Query: 892 AWLMGLKTTYYLRSRS 907 W LKTTYY R +S Sbjct: 731 CWKNKLKTTYYFRGQS 746 >gi|156564206|ref|YP_001429716.1| nrd alpha subunit [Bacillus phage 0305phi8-36] gi|154622903|gb|ABS83783.1| nrd alpha subunit [Bacillus phage 0305phi8-36] Length = 767 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 209/792 (26%), Positives = 352/792 (44%), Gaps = 108/792 (13%) Query: 166 VEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLL 225 +E A ++ + ++ + + + + L ++ ++ + P++ V A L Sbjct: 22 LERASKE-YNLDATKIIEKVKRLSHTE--DKALHNSIFYALNNIDMGAPDWTFVAANMKL 78 Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 +++ + + + + Y + E G+ + + S + ++ + + Sbjct: 79 QQMYKTA----SENRGYSRSLKYGSFY-KLIKTLTEMGIYSPAILASYSEEEINEIGRMI 133 Query: 286 KYERDFAFEYLGLQILYDRYF-LHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEF 342 +D F ++GL +L DRY GS E+PQ M +A+ + E + + E Sbjct: 134 DPSKDSLFNFIGLFLLNDRYAATDYQGSLYELPQERLMMIAVTTMINEPKATRLAHIKEL 193 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 Y LS+ + +TPT N+G + QLSSCF+ V D L GI+ + + A L+K GG+ Sbjct: 194 YWALSNLYATAATPTFANAGKSYGQLSSCFIDKVDDSLDGIYLSNMDAARLSKDGGGVAL 253 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 ++ VR LG+ I G GKS G P++K+ N TA+ V+Q G+RKGA Y+ H D+ +F Sbjct: 254 YFSKVRALGSPIKGFEGKSSGTTPWIKMFNQTAITVDQLGQRKGAFAIYMCLDHKDIMKF 313 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ-------NAGWTLFSPDEVSDLHDL-- 513 L+L N GD+ R ++ T +PDLFMK++ + W F P ++ Sbjct: 314 LELGLNNGDEADRAREIFTGVAVPDLFMKKLDEVDENGRSIGQWHTFCPHQIKQHMQWKD 373 Query: 514 -----------YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 Y ++ YE +A + A+ + +++ + ETG P++ Sbjct: 374 ENGNLLTLDDFYDEKDTKYYEEKYMEAVNNPLLPRDTHRAMDIMVRIMEIQLETGMPYMF 433 Query: 563 FKDPCNIRSPQQHVG-----VVHSSNLCTEITLNS--------------------SSEET 597 ++D N +P +HV ++ SNLCTEI N S E Sbjct: 434 YRDQVNRMNPNKHVHGIGRTAIYCSNLCTEIAQNQVSSMIIGEYIDENENIHMVRSPGEY 493 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 VCNL S+NL LA IR R+LDN+IDIN ++ +A +N +R IG Sbjct: 494 VVCNLASVNLAKAVPAGV-----LARVIRIVTRMLDNIIDINTISVLQAGITNKRYRPIG 548 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 +G G+ L +L + + S AV AD E ++H I +SVELA+E+G Y F+GS W Sbjct: 549 MGAYGWHHLLAILGLDWESEAAVNYADTLYEEFAYHVIDSSVELAKEKGTYKYFEGSAWH 608 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G + W LK++V G+RN MA+AP AT A + G Sbjct: 609 TG--------------EYFDQRDYVSAKWKALKEKVAKFGVRNGWMMALAPNATTAKVGG 654 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + DP + + F V + Sbjct: 655 STDGNDPITAVEGAEEKGNFKFKVTAP-------------------------------GL 683 Query: 838 PDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895 + ++ T ID +W ++ +++Q+ IDQ+ S NLY+ + G +L I++ A + Sbjct: 684 DHNTYNVYRKTRHHIDQLWSVKQTAKKQRHIDQSISFNLYVASDIDGAELLNIHKTAHKL 743 Query: 896 GLKTTYYLRSRS 907 G+KTTYY++ S Sbjct: 744 GIKTTYYVKGES 755 >gi|16082440|ref|NP_394926.1| ribonucleotide-diphosphate reductase subunit alpha [Thermoplasma acidophilum DSM 1728] gi|10640815|emb|CAC12593.1| ribonucleotide reductase [Thermoplasma acidophilum] Length = 770 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 205/839 (24%), Positives = 352/839 (41%), Gaps = 117/839 (13%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQD---VSSKIVLSETYKNMYD--GLSESDLETA 201 ++ DGT++ F ++ M + +A +++ ++ + + + D S +++ Sbjct: 7 VVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKDAEQLADKVVARLKDKERPSVEEIQDV 66 Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + T + V L RE ++A E + + + + Sbjct: 67 VEDVLMTSKIDGKTFTDVAKS---YILYRE--------KRRAIREEKELMGVKDDLKLTL 115 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE------ 315 VK + D D + + R A ++ LYD G E Sbjct: 116 NAVKVLEARYLLKDEDGKIIETPRQMFRRVASHIGIVEALYDYIKYKKTGKVPENAEIIG 175 Query: 316 --MP-QAFFMRVAMGLALKETEKE------------------KRAVEFYNLLSSFHFMCS 354 P Q +R A G ++ E F ++SS F+ + Sbjct: 176 KVSPTQEEVLRRAFGYMKEDGIIEGTFEEFMDFIQTKGTSAGHYINRFEEVMSSLDFVPN 235 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 +PTL N+GT+ QLS+CF+ V D + IF L+ A++ K GG G ++ +R + Sbjct: 236 SPTLMNAGTKLGQLSACFVLPVGDSIEDIFETLKNTALIHKSGGGTGFSFSRLRPKDDIV 295 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 T G + G + F+K+ + T + QGGKR+GA L H D+ EF+ L K++ + Sbjct: 296 GSTKGVASGPVSFMKIFDVTTDVIKQGGKRRGANMGILNYNHPDIMEFI-LSKDSENKVL 354 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 +++ + D F ++ + L +P Sbjct: 355 SNFNISVG--VTDDFFDKLDNDDYVDLVNPRT---------------------------K 385 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 K+ ++I A +W ++ ++T P + F D N ++P ++VG + S+N C E L Sbjct: 386 KIMKRIKAREIWDAIIDQAWKTADPGLIFLDEINRKNPVKNVGDIESTNPCGEQPLLPY- 444 Query: 595 EETAVCNLGSINLLAHF-ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 CNLGSINL + + D+D+L T+ TA R LD+VID N +E+ KK Sbjct: 445 ---ESCNLGSINLSKYVVDGKKIDFDRLRETVWTATRFLDDVIDANKFPVEQIKKVTRMT 501 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+MGF L L IPY S EA+EI ++ M FI+ + AS LA+ERG + ++ G Sbjct: 502 RKIGLGVMGFADMLIKLEIPYNSWEALEIGEKVMSFINDESHKASQALAEERGVFPAWYG 561 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W+ K+ +K MRNS IAPT TI+ Sbjct: 562 SEWE--------------------------------KEGIK---MRNSTTTTIAPTGTIS 586 Query: 774 NICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I G S SI+P + +V+ ++G + VN + ++ ++ E ++ + G++ Sbjct: 587 IIAGCSSSIEPIFALAFVRHVLNGQELLEVNPLFEEKTRELGIYSEELMRQVAET-GNLE 645 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQ 891 N++ I +++KKI TA EIDP W + + Q++ D S + + + + + + YR Sbjct: 646 NVK-INEEVKKIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINMRSDATREDIARAYRM 704 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 A + K R +S T + K V + + + T D C Sbjct: 705 AKDLHCKGITVYRDKSKTVQVLTAGTAETKKPEEKEVIELVTKMPDKYLKIDSTFDPAC 763 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 34/171 (19%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G V F+ +KI+ AI KA ++V+ + L ++ V RL + Sbjct: 6 EVVKRDGTVVPFEKNKITMAIYKAMLSVKNGTMKD-------AEQLADKVVARLKDKER- 57 Query: 90 ALIVHIEDIQDQVECSLMQSG-----HHKITREYVLYREERSDVRAAQSHSKSDAPIAPK 144 +E+IQD VE LM S + + Y+LYRE+R +R + + Sbjct: 58 ---PSVEEIQDVVEDVLMTSKIDGKTFTDVAKSYILYREKRRAIREEKELMGVKDDLKLT 114 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSE 195 L + V EA L+D KI+ ET + M+ ++ Sbjct: 115 LNAVK----------------VLEARYLLKDEDGKII--ETPRQMFRRVAS 147 >gi|224371724|ref|YP_002605888.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfobacterium autotrophicum HRM2] gi|223694441|gb|ACN17724.1| NrdA [Desulfobacterium autotrophicum HRM2] Length = 736 Score = 373 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 172/657 (26%), Positives = 275/657 (41%), Gaps = 81/657 (12%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNLL 346 L +L RY G +E P FMRVA +A E + FY ++ Sbjct: 11 EISEATLTVLKRRYLQKDKRGRVVETPGQMFMRVASYIAAAEKAHGNDPGVYRDLFYGIM 70 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + F+ ++PTL N+GT QL++CF+ V D + GIF ++ A++ K GG G ++ Sbjct: 71 ARLEFLPNSPTLMNAGTDLGQLAACFVLPVEDSISGIFETVKNAALIHKSGGGTGFSFSR 130 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R + + T G + G + F+K+ N V QGG R+GA A L H D+ EF+ + Sbjct: 131 LRPKDSRVGSTGGVASGPVSFMKIFNVATEQVKQGGTRRGANMAVLRVDHPDIMEFILCK 190 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + + D + N + + D FM + + L P + Sbjct: 191 QASADLN----NFNISVGVTDEFMVKARTGLPYNLVDPRD-------------------- 226 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +V ++A ++ M+ + G P I F D N +P +G + S+N C Sbjct: 227 -------GRVVGTLNATDVFEAMVKQAWHNGDPGIIFLDRINQDNPTPLLGEIESTNPCG 279 Query: 587 EITLNSSSEETAVCNLGSINLLAHFA----NNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 E L CNLGS+NL DY L TI AVR LD+ ID + + Sbjct: 280 EQPLLP----MEACNLGSVNLAKFVVEKKGKPTIDYASLGKTIALAVRFLDDTIDRSIYP 335 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +++ +R IGLG+MGF L L +PY S AV +A+E M F+ A AS LA Sbjct: 336 LDEITAMVRGNRKIGLGVMGFADLLFALELPYNSDRAVALAEEVMAFVQSEARKASRALA 395 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 QERG + +F S + + R RN+ Sbjct: 396 QERGVFENFDKS-----------VFRNDKDRR-----------------------FRNAT 421 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMI 821 IAPT T++ I G S I+P + ++++ M + F VN + + + + EA++ Sbjct: 422 VTTIAPTGTLSIIAGSSSGIEPLFALSFIRTIMDNETFLEVNPHFMAVAQAQGFYSEALM 481 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 + G+I + IP+ ++K+ TA ++ P W ++ + QK D A S + L + Sbjct: 482 EKIAKT-GTIKGMTEIPESVRKVFVTAHDVSPAWHVKMQAAFQKHTDNAVSKTVNLPRDA 540 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + + IY A+ G K R S + S + T Sbjct: 541 TEHDVAEIYTSAFDFGCKGVTIYRDGSKANQVLSISGATAPQDRFSKSVRQRPETLE 597 >gi|301058132|ref|ZP_07199184.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [delta proteobacterium NaphS2] gi|300447764|gb|EFK11477.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [delta proteobacterium NaphS2] Length = 830 Score = 373 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 174/735 (23%), Positives = 294/735 (40%), Gaps = 85/735 (11%) Query: 216 YAKVTARFLLEKLRREVLTTVYKKPQKAT-HHEMQCLYPEYFCR-YIEEGVKARLLHESM 273 Y RF +R+ + E+ L + IE ++A+L + Sbjct: 20 YNWDDNRFSDFLVRKNAIDPDQAMDVSRFLRKEIAKLELQTITMPIIEHMIEAKLREFGL 79 Query: 274 MDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE 332 + L ++ +++L RY G IE P+ F RVA +A E Sbjct: 80 SAMSPLRLDKSFFVKQGLELSDNAVRVLERRYLRQDKEGRAIETPEEMFARVAHHIAQAE 139 Query: 333 TE----KEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGA 386 + VE FY L++ F F+ ++PTL N+G QL++CF+ V D + GIF + Sbjct: 140 KRYGGEDRIKDVEAVFYRLMTEFKFLPNSPTLMNAGRELGQLAACFVLPVEDSMDGIFDS 199 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 L+ A++ K GG G ++ +R + + T G + G + F+K+ N V QGG R+G Sbjct: 200 LKNAALIHKSGGGTGFSFSRLRPKKSRVGTTGGIASGPVSFMKIFNTATEQVKQGGTRRG 259 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A A L H D+ EF+D +KN + + N + + D FM+ V + + L P Sbjct: 260 ANMAILRVDHPDILEFIDCKKNNEELN----NFNISVGVTDAFMESVKADTNYDLIDPR- 314 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 + +++A ++ ++ +E G P I F D Sbjct: 315 --------------------------NGRKTGQLNAKEVYDALIQRAWENGDPGIVFLDK 348 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH----FANNQFDYDKLA 622 N +P +G + S+N C E L CNLGSINL DY L Sbjct: 349 VNQDNPTPGLGEIESTNPCGEQPLLP----MEACNLGSINLAKFVVDTDEGPAVDYAGLK 404 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 +R +V LDN ID++ + + + + +R IGLG+MGF L+ L IPY S +A+E Sbjct: 405 EVVRESVHFLDNTIDMSRYPLPEIGEMVRGNRKIGLGVMGFADLLYQLRIPYDSEKALET 464 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 A+ M F+ + AS +LA+ERG + +F S + + R + + + Sbjct: 465 AEAVMGFVQEASHQASRQLAEERGVFGNFDKS--------------VFKRRKDCSYRNAT 510 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801 + I G S I+P + + ++ M D Sbjct: 511 TTTIAPTGTL--------------------SIIAGCSSGIEPLFALSFARNVMDNDRLVE 550 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 N + K++ + ++ + G+I NI IP + + + TA +I P W + + Sbjct: 551 TNPYFEETAKKKGYFSSELMD-IVAQKGTIHNINEIPAEDRAVFVTAHDIVPEWHLRMQA 609 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 Q+ D A S + L + + + + +Y A+ + K R S + S Sbjct: 610 AFQRHTDNAVSKTVNLPRDATVEDVKEVYDLAYELSCKGVTIYRDGSKENQVLSFTDKKK 669 Query: 921 GKLNAVPVTDPNSST 935 Sbjct: 670 KTHGRFMTAVEERPE 684 >gi|238879998|gb|EEQ43636.1| ribonucleoside-diphosphate reductase large chain [Candida albicans WO-1] Length = 583 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 202/577 (35%), Positives = 306/577 (53%), Gaps = 24/577 (4%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 KI + G F+S ++ ++EE L D+ ++ + + L+ +L T + Sbjct: 3 KIKVLSGEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVESVQRGLPSSLTIEELYTFIAEV 62 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + P+YA + R KL +V + + ++ +Y R Sbjct: 63 IASRVIYHPDYAILAGRIETRKLYLKVPYSFSENVERLR---------KYRPRKSNSYSP 113 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 ++ +L + RD+ Y G++ L Y L I+G E+PQ FMRVA Sbjct: 114 ISSAFYKVVKKHGEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVA 173 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGIF 384 +G+ + E Y+L+S +F+ ++PTL+N+G+ LSSCFL + DD + GIF Sbjct: 174 IGIHQND---INAIAETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIF 230 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG-K 443 L E A+++K SGG+G +R G++I TNG S G++P L+V N+TA V+QGG K Sbjct: 231 KTLNEAALISKASGGIGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGK 290 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R GA Y+E WH D+ + L++RKN G++ RT D+ WIPDLFMKRV +N+ WTLFS Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 P+E L D+YG+EFE Y YE + K+SA LW +L ETG P++ + Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEGFGT------KVSAHKLWLAILHSQTETGGPYMLY 404 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----FDYD 619 KD CN +S Q+++G + SSNLC EI SS +ETAVCNL S+ L + + FD++ Sbjct: 405 KDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFE 464 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL S + R L+ VID+ + +E A+ SN HR I LG+ G L +P+ S A Sbjct: 465 KLHSVTKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMA 524 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 + + E I A+ ASVELA + G Y + + Sbjct: 525 KTLNIQIFETIYHAALEASVELAMKEGPYETSRAHRH 561 >gi|323143006|ref|ZP_08077712.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas hippei YIT 12066] gi|322417200|gb|EFY07828.1| ribonucleoside-diphosphate reductase, alpha subunit [Succinatimonas hippei YIT 12066] Length = 591 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 177/679 (26%), Positives = 279/679 (41%), Gaps = 102/679 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + +D F+ LG+ L + Y PQ F V+ ++ A Y+ Sbjct: 5 IDLTKDNLFDDLGITRLKESYMRPEEK----SPQERFAFVSETFG----SDKEHAQRIYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 S STP L T SCFL+ + D G+ L E L+ Sbjct: 57 YASRHWLSFSTPILSFGRTSQGLPVSCFLSYMEDSADGLIETLSEVNRLSMLG------- 109 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 G+ I + KS GV+P LK+ + +A QG R+G+ A+L+ H D+ F++ Sbjct: 110 -GGIGIHLGIRSADEKSVGVMPHLKIYDAACLAYRQGTTRRGSYAAFLDISHPDIIPFIE 168 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK TGD RT +++ I D FM+++T+ + ++ Sbjct: 169 MRKPTGDQNMRTLNLHHGINISDAFMQKITK--------------------CMQDDNADD 208 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ---HVGVVHS 581 + D K+ +SA LW+++L + +TG P++ F D P ++ Sbjct: 209 SWQLIDPHSKKIIETVSARDLWQRILELRMQTGEPYLIFTDTAEKALPHWLKTKNLHING 268 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLCTEI L ++ + TAVC L S+NL ++ + I + LDNV+ Sbjct: 269 SNLCTEIFLPTNEQRTAVCCLSSLNLE-----YFDEWRHDSQFIDDVMEFLDNVLQYFIE 323 Query: 642 TIEKAKK----SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + K S R++GLG +GF S L IP+ S A I + I A Sbjct: 324 HAPNSIKRAKLSAFKERSVGLGALGFHSYLQKKGIPFESVIAKSINKQIFSHIRQCCELA 383 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 L RG D V Sbjct: 384 DKRLCALRGPCP-------------------------------------DASDAGVMR-- 404 Query: 758 MRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 R S+ MAIAP A+ + I G S SI+P N+Y + +SG + N L LK+ +L Sbjct: 405 -RFSHWMAIAPNASSSLIVGNTSPSIEPRRANVYRQDTLSGAYITKNRHLQQALKELNLD 463 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 E + +D+ HDGS+ +++ +P ++ + TA EID ++I+ A+ RQ++IDQ QS+NL+ Sbjct: 464 TEEIWTDIIAHDGSVQHLDILPQQIRDVFKTAQEIDQRFIIDLAADRQQFIDQGQSVNLF 523 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 + S K L + AW GLK+ YY RS K + + ++ Sbjct: 524 FPADVSIKYLHACHYLAWKKGLKSLYYCRS------------DKLRKADRIGISIKRQKI 571 Query: 936 HSLGIPSSCTSDTECEVCQ 954 S +D C C+ Sbjct: 572 EDDINMQSLLNDNTCLACE 590 >gi|317472118|ref|ZP_07931450.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA] gi|316900522|gb|EFV22504.1| ribonucleoside-diphosphate reductase [Anaerostipes sp. 3_2_56FAA] Length = 676 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 199/681 (29%), Positives = 338/681 (49%), Gaps = 65/681 (9%) Query: 148 MMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKN-MYDGLSESDLETALIFSS 206 +++ F L ++ LQ+ S +L+E +++ + +G+ + + L+ ++ Sbjct: 24 ILESFRTEKFPIGDLLKSIQN--EFLQEEYSLNILNEKFQSFLKEGMEDHEKLLLLVKAA 81 Query: 207 RTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 L +E P + + AR + + V + + + + ++ L ++ + Sbjct: 82 AELTSQEAPKWENIAARLKILEFESVVKNNLEEYQIRNFYEKIVFLS--------QQNLY 133 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRV 324 + ++ + ++ ++ ++ ER+ F Y GL++L RY + G+ +E PQ FM + Sbjct: 134 GDYILKNYAEDEIHLFSSWIRPERNSLFHYSGLELLLSRYVIRDRQGNPLETPQEMFMGI 193 Query: 325 AMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 AM LA+KE ++ + FY++LS +TPTL N+ + QLSSCF+ TVPD L GI Sbjct: 194 AMHLAMKETEDRNQWVKRFYDMLSLLQVTMATPTLSNARKPYHQLSSCFIDTVPDSLDGI 253 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ++ A ++K+ GG+G + VR G+ I G G + GVI ++++ANDTAVAV+Q G Sbjct: 254 YRSIDSFAKVSKFGGGMGLYFGKVRASGSSIRGFEGAAGGVIRWIRLANDTAVAVDQLGM 313 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTL 501 R+GAV YL+ WH D+ EFL LR N GD+R + HD+ A PD F ++ N W L Sbjct: 314 RQGAVAVYLDVWHRDLPEFLSLRTNNGDERMKAHDVFPAVCYPDYFWEQARDNIEGNWYL 373 Query: 502 FSPDEV-----SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 P E+ L D YG E+ Y + E R I + R ++ ET Sbjct: 374 MCPHEILTVKGYALEDCYGTEWTEKYLDCV----LDERISKRVIPIKDIVRMIIKSAAET 429 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS----------------------- 593 G P+ +D N +P +H G+++ SNLCTEI N S Sbjct: 430 GTPFTFNRDHVNRANPNRHKGIIYCSNLCTEIAQNMSASGQTEQKIEMIGGEEVVVTVTK 489 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S++L DY++L+ +AVR LDNVID+N + A+ ++ + Sbjct: 490 PGDFVVCNLASLSLGNLCVT---DYEQLSYVTESAVRALDNVIDLNFFPVPYAEINSKRY 546 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +GLG+ G+ L I + S E ++ A++ I + A++AS ++++E+G+Y F G Sbjct: 547 RPVGLGVSGYHHMLAKHKIQWESEEHLKFAEKVFSDIHYAALAASSKISEEKGSYPYFPG 606 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S W G D ++ W L+ RVK G+RN +A APT++ + Sbjct: 607 SDWQTG--------------DYFRKRDLTKGRWKALEDRVKKHGLRNGYLLAAAPTSSTS 652 Query: 774 NICGVSQSIDPSYQNLYVKSN 794 I G + +DP +++ Sbjct: 653 IITGTTAGLDPVMNRYFLEEK 673 >gi|303238293|ref|ZP_07324829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetivibrio cellulolyticus CD2] gi|302594339|gb|EFL64051.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetivibrio cellulolyticus CD2] Length = 778 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 171/669 (25%), Positives = 286/669 (42%), Gaps = 85/669 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAV------EFY 343 +++L RY NG +E P+ FMRVA +AL + + EFY Sbjct: 1 MNLTENAVKVLEKRYLSKDENGCLLEDPKGMFMRVAKAVALADKDFVSAKELKAIEQEFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ + F+ ++PTL N+G QLS+CF+ + D + GIF ++ A++ K GG G Sbjct: 61 DMMLNLEFLPNSPTLMNAGRPLGQLSACFVLPIEDTMEGIFETIKNAALIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA ++ T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRQKGASVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRVDHPDILEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K+ D + N + I + FM V + L P Sbjct: 181 SCKKDNSD----ITNFNISVGITEKFMSAVEAAGDYDLIDPHS----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 K K++A ++ ++ M + G P I F D N + +G + S+N Sbjct: 220 ----------GKTVGKLNARYVFDIIIDMAWNNGEPGIIFLDRLNKDNVTPELGNIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDIN 639 C E L CNLGSINL N + DYDKL +T R AV LDNVID+N Sbjct: 270 PCGEQPLLPY----EACNLGSINLSLMIKNTDGVPEVDYDKLGNTARKAVHFLDNVIDVN 325 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + + R IGLG+MG+ L L+I Y S +A+ +A++ M FI + AS+ Sbjct: 326 KYPLPEIDEMTRGTRKIGLGVMGWADMLCKLNIAYNSQKAIALAEKIMHFIQEESRKASI 385 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+++G + + S++ L ++R+ Sbjct: 386 ELAEKKGVFPHYDKSIYK---------DLGIKIRNATTTTIAPTGTL------------- 423 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDE 818 + I GVS I+P + Y+++ M + VN + + Sbjct: 424 -------------SIIAGVSSGIEPLFAISYIRNVMDNDELIEVNPLFKQIAVIDGFYSD 470 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL- 877 ++ + + G+I IP ++ + AT+ +I P W ++ + Q++ D A S + L Sbjct: 471 ELMRRIA-NKGTIHGFPEIPKSVQSVFATSHDISPEWHVKMQAAFQRYTDNAVSKTVNLR 529 Query: 878 DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 +E + + + ++ A+ K R S ++ + V GK V + Sbjct: 530 NEATKEDVSEVFWHAYKTYCKGVTIYRDGSR-DLQVLNIGKVKGKEQEATVEESVEIPTK 588 Query: 938 LGIPSSCTS 946 IP Sbjct: 589 CIIPRQRPD 597 >gi|311993226|ref|YP_004010092.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31] gi|284178064|gb|ADB81730.1| aerobic NDP reductase, large subunit [Enterobacteria phage CC31] Length = 751 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 180/802 (22%), Positives = 317/802 (39%), Gaps = 82/802 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ GT F ++L ++E C V + ++ DG++ D++ A Sbjct: 1 MKVIKSSGTSQEFTPEKLIKVLEWGCEN-TRVDPYELYQAIVPHLQDGMTTYDIQRAATK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + ++I +EP+Y V + + LR++V + + + + Sbjct: 60 VAASMISIEEPDYQYVASNLAMFNLRKQVYGQFEPR-----------SFIDQISFGVNHN 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321 + + ++ L + + ++RDF Y G L ++Y + G IE PQ F Sbjct: 109 KYDKEVLAKWSAEEIALLESKIVHDRDFEMTYAGTMQLIEKYLVKDRSTGQIIETPQFAF 168 Query: 322 MRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 M + M L + + + FY+ +S+ TP + + T Q SSC + D L Sbjct: 169 MLIGMTLHQDDGENRLVNTIRFYDAVSTKKISLPTPIMAGARTPTRQFSSCVVIEAGDSL 228 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + + G+G + +R G+ I K GVIPF K + +Q Sbjct: 229 KSINKSAESIVEYISKRAGIGINAGMIRAEGSKIGFGEVKHTGVIPFWKHIQTAVKSCSQ 288 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA Y WH++VE L L+ N G D R ++ I DL +R+ ++ T Sbjct: 289 GGVRGGAATLYYPIWHLEVENLLVLKNNKGVDENRIRHLDYGVQINDLMFERLIKDDYIT 348 Query: 501 LFSPD----EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LFSPD + + + F YE E+ D + +++ A L LT T Sbjct: 349 LFSPDIDAGRLYENYFKDAAAFREQYEALEKNPDVRK----KRVKARELIELFLTERSGT 404 Query: 557 GHPWITFKDPCNIRSPQ-QHVGVVHSSNLCTEITLNSSSE-----ETAVCNLGSINLLAH 610 + F D P + V + SNLC EI L + E A+C L + L Sbjct: 405 ARIYPYFVDNVGDYGPFIRDVATIKQSNLCAEIALPTKDVYSEDAEIALCTLSAFVLGNF 464 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D + + VR LDN++ + +++A K RA+G+G+ + + L Sbjct: 465 ---DWQDQETINELAEVQVRALDNLLSYQGYPVKEALK-ALKRRALGVGVTNYAAWLADN 520 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 YA +A ++ E E + + I AS++LA+E+G +K + W +G PID Sbjct: 521 FATYA--DANDLTHELFERLQYALIKASIKLAKEKGPCEYYKDTRWSRGELPIDWYNK-- 576 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R + W+ L+ +K G+RNS A+ P + + + + I+P + Sbjct: 577 --RIDQLAAPNYVCDWEALRAELKQYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVS 634 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +K + G F V + + DL A++ Sbjct: 635 IKESKEGSFNQVVPNV-----------------------------ELNADLYDY---AWK 662 Query: 851 ID---PMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTT 900 + + + KW+ Q+ S N Y D + +K + W G KT Sbjct: 663 LAKQGNKPYLTQVAIMLKWVCQSASANTYYDPQNYEKGKVPMSVMMDDLLYFWYFGGKTL 722 Query: 901 YYLRSRSATSVEKSTLKGVDGK 922 YY +R + + ++ + Sbjct: 723 YYHNTRDGSGNDDFEIEKPKAE 744 >gi|296170901|ref|ZP_06852438.1| ribonucleoside-diphosphate reductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894450|gb|EFG74194.1| ribonucleoside-diphosphate reductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 701 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 183/798 (22%), Positives = 303/798 (37%), Gaps = 136/798 (17%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI-------VLSETYKNMYDGLSESDL 198 + DG L+ F+ R+E + A ++ V G+ + Sbjct: 13 NVRRRDGRLVPFDVARIETAIGRAAREAGHRDPQLPALLARSVADALVGRFRSGIPTVEG 72 Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 L+ AR + L ++ Y Y + Sbjct: 73 IQDLVE----------------ARLTADGL-----------------DDVARAYAVYRRQ 99 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEM 316 + E +L RD + +L +RY L + G +E Sbjct: 100 HAEL-----------------RATKELLGVRDELKLSVAAVTVLGERYLLRDDRGRPVES 142 Query: 317 PQAFFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSC 371 RVA +A E + + A F LL F+ ++PTL N+GT LS C Sbjct: 143 TGEMMDRVADHVAGAEEKFRPGSSAQWAQRFSALLRGLEFLPNSPTLMNAGTELGLLSGC 202 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 F+ V D L+ IF AL + A + + GG G ++ +R G + T G + G + FL++ Sbjct: 203 FVLPVDDSLHSIFTALAQGADIHQAGGGTGYTFSHLRPTGDLVVRTGGTASGPLSFLRLF 262 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + A ++ GG+R+GA A L+ H D+ +F+ + + + + N + + D F++ Sbjct: 263 DYAAAVISMGGRRRGASMAVLDVSHPDIYDFVTAKSGSQTELNQ---FNLSVGVTDEFLR 319 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 V + L +P K +SA L+ + Sbjct: 320 AVGRGGSHRLVNPRT---------------------------GKTAATVSAADLFTAICE 352 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 G P + F D N +P +G + ++N C E+ L CNLGSINL Sbjct: 353 AAHRCGDPGLVFLDTINRANPTPALGRIEATNPCGEVPLLPY----ESCNLGSINLARMV 408 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 D+++L + AVR LD+VID++ + + + R IGLG+MG L L Sbjct: 409 GAGGVDWERLTAVAELAVRFLDDVIDVSRLPFPEVEAATTATRKIGLGVMGLAELLAGLG 468 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 IPY S V +A ++ A +AS LA+ERG + +F S + G P Sbjct: 469 IPYDSERGVRLAARIARTVNRAAHAASERLAEERGPFPAFGHSRFA-GSAP--------- 518 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 RN+ +IAPT TI+ I G S I+P + Y+ Sbjct: 519 --------------------------RRNAQLTSIAPTGTISLIAGTSAGIEPMFAIAYI 552 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 ++ + VN + R + +I+++ H G + +P +++ TA EI Sbjct: 553 RAVIGRRLLEVNPCFDRLARDRGFYHPDLIAEIARHGG-VRRDPHVPAEVRAAFPTAAEI 611 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 P W + + Q+ +D A S + L E + + + IY AW +K R S Sbjct: 612 APEWHLRMQAAVQRHVDAAVSKTVNLPAESTVEDVRTIYLAAWRARVKGITVYRYGSRAG 671 Query: 911 VEKSTLKGVDGKLNAVPV 928 S + + L A Sbjct: 672 QVLSYVGTDEALLAADAT 689 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 8/132 (6%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 V +R+G + FD ++I AI +A R + L L+ +S Sbjct: 13 NVRRRDGRLVPFDVARIETAIGRA-------AREAGHRDPQLPALLARSVADALVGRFRS 65 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 I +E IQD VE L G + R Y +YR + +++RA + + + + Sbjct: 66 G-IPTVEGIQDLVEARLTADGLDDVARAYAVYRRQHAELRATKELLGVRDELKLSVAAVT 124 Query: 150 DDGTLISFNSKR 161 G R Sbjct: 125 VLGERYLLRDDR 136 >gi|15839968|ref|NP_335005.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Mycobacterium tuberculosis CDC1551] gi|13880109|gb|AAK44819.1| ribonucleoside-diphosphate reductase, alpha subunit, putative [Mycobacterium tuberculosis CDC1551] Length = 735 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 187/811 (23%), Positives = 309/811 (38%), Gaps = 132/811 (16%) Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSE 184 R + + ++ K+ DGTL+ F+ R+E V A + + V Sbjct: 33 ERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKA 92 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 + G++ + I AR +A Sbjct: 93 VADALGRGIAPVE----DIQDCVE------------ARL-----------------GEAG 119 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYD 303 ++ +Y + +L A L RD + +L + Sbjct: 120 LDDVARVY----------------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRE 162 Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPT 357 RY LH G E R A +A E + E A F LL + F+ ++PT Sbjct: 163 RYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPT 222 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 L NSGT L+ CF+ + D L IF L + A L + GG G ++ +R G + T Sbjct: 223 LMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVAST 282 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G + G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + Sbjct: 283 GGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LP 339 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 N + + D F++ V +N L +P K+ Sbjct: 340 HFNLSVGVTDAFLRAVERNGLHRLVNPRT---------------------------GKIV 372 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 ++ A L+ + G P + F D N +P G + ++N C E+ L Sbjct: 373 ARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY---- 428 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNLGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IG Sbjct: 429 ESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIG 488 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 489 LGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFA 548 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + RN+ ++APT TI+ I G Sbjct: 549 RSGP------------------------------------RRNAQVTSVAPTGTISLIAG 572 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P + + ++ + VN + R + + +I+++ G + R+ Sbjct: 573 TTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRL 631 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896 P +++ TA EI P W + + Q+ ++ A S + L + + IY AW Sbjct: 632 PAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAK 691 Query: 897 LKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 +K R S S+ A Sbjct: 692 VKGITVYRYGSREGQVLSSAAPKPLLAQADT 722 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 23/156 (14%) Query: 1 MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49 M P+ + G + P F + K V +V +R+G + FD ++I A Sbjct: 11 MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70 Query: 50 IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109 + +A V + D+ + + L + I +EDIQD VE L ++ Sbjct: 71 VTRAAREV-------ACDDPDMPGTVAKAVADALGR-----GIAPVEDIQDCVEARLGEA 118 Query: 110 GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 G + R Y++YR+ R+++R A++ + L Sbjct: 119 GLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 154 >gi|289446117|ref|ZP_06435861.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium tuberculosis CPHL_A] gi|289419075|gb|EFD16276.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium tuberculosis CPHL_A] Length = 736 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 186/798 (23%), Positives = 307/798 (38%), Gaps = 132/798 (16%) Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSE 184 R + + ++ K+ DGTL+ F+ R+E V A + + V Sbjct: 33 ERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKA 92 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 + G++ + I AR +A Sbjct: 93 VADALGRGIAPVE----DIQDCVE------------ARL-----------------GEAG 119 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYD 303 ++ +Y + +L A L RD + +L + Sbjct: 120 LDDVARVY----------------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRE 162 Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPT 357 RY LH G E R A +A E + E A F LL + F+ ++PT Sbjct: 163 RYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPT 222 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 L NSGT L+ CF+ + D L IF L + A L + GG G ++ +R G + T Sbjct: 223 LMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVAST 282 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G + G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + Sbjct: 283 GGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LP 339 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 N + + D F++ V +N L +P K+ Sbjct: 340 HFNLSVGVTDAFLRAVERNGLHRLVNPRT---------------------------GKIV 372 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 ++ A L+ + G P + F D N +P G + ++N C E+ L Sbjct: 373 ARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY---- 428 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNLGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IG Sbjct: 429 ESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIG 488 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 489 LGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFA 548 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + RN+ ++APT TI+ I G Sbjct: 549 RSGP------------------------------------RRNAQVTSVAPTGTISLIAG 572 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P + + ++ + VN + R + + +I+++ G + R+ Sbjct: 573 TTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRL 631 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896 P +++ TA EI P W + + Q+ ++ A S + L + + IY AW Sbjct: 632 PAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAK 691 Query: 897 LKTTYYLRSRSATSVEKS 914 +K R S S Sbjct: 692 VKGITVYRYGSREGQVLS 709 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 23/156 (14%) Query: 1 MHPSKDVNKGD-----EDAFPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRA 49 M P+ + G + P F + K V +V +R+G + FD ++I A Sbjct: 11 MRPTSGRSIGSARFSRRSSMPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAA 70 Query: 50 IMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQS 109 + +A V + D+ + + L + I +EDIQD VE L ++ Sbjct: 71 VTRAAREV-------ACDDPDMPGTVAKAVADALGR-----GIAPVEDIQDCVEARLGEA 118 Query: 110 GHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 G + R Y++YR+ R+++R A++ + L Sbjct: 119 GLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 154 >gi|253797502|ref|YP_003030503.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 1435] gi|289552822|ref|ZP_06442032.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 605] gi|253319005|gb|ACT23608.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 1435] gi|289437454|gb|EFD19947.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 605] gi|328457287|gb|AEB02710.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis KZN 4207] Length = 706 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 186/798 (23%), Positives = 307/798 (38%), Gaps = 132/798 (16%) Query: 128 VRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSE 184 R + + ++ K+ DGTL+ F+ R+E V A + + V Sbjct: 4 ERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKA 63 Query: 185 TYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 + G++ + I AR +A Sbjct: 64 VADALGRGIAPVE----DIQDCVE------------ARL-----------------GEAG 90 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYD 303 ++ +Y + +L A L RD + +L + Sbjct: 91 LDDVARVY----------------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRE 133 Query: 304 RYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPT 357 RY LH G E R A +A E + E A F LL + F+ ++PT Sbjct: 134 RYLLHDEQGRPAESTGELMDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPT 193 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 L NSGT L+ CF+ + D L IF L + A L + GG G ++ +R G + T Sbjct: 194 LMNSGTDLGLLAGCFVLPIEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVAST 253 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G + G + FL++ + A V+ GG+R+GA A L+ H D+ +F+ + + + Sbjct: 254 GGTASGPVSFLRLYDSAAGVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LP 310 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 N + + D F++ V +N L +P K+ Sbjct: 311 HFNLSVGVTDAFLRAVERNGLHRLVNPRT---------------------------GKIV 343 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 ++ A L+ + G P + F D N +P G + ++N C E+ L Sbjct: 344 ARMPAAELFDAICKAAHAGGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY---- 399 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNLGSINL A+ + D+D+L AVR LD+VID++ + + ++ R IG Sbjct: 400 ESCNLGSINLARMLADGRVDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIG 459 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG L L IPY S EAV +A M I A +AS LA+ERGA+ +F S + Sbjct: 460 LGVMGLAELLAALGIPYDSEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFA 519 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 + RN+ ++APT TI+ I G Sbjct: 520 RSGP------------------------------------RRNAQVTSVAPTGTISLIAG 543 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + I+P + + ++ + VN + R + + +I+++ G + R+ Sbjct: 544 TTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRL 602 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896 P +++ TA EI P W + + Q+ ++ A S + L + + IY AW Sbjct: 603 PAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAK 662 Query: 897 LKTTYYLRSRSATSVEKS 914 +K R S S Sbjct: 663 VKGITVYRYGSREGQVLS 680 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 18/137 (13%) Query: 15 FPSLAYPFPEKIKGV------QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRV 68 P F + K V +V +R+G + FD ++I A+ +A V + Sbjct: 1 MPGERRRFAQATKSVGVSWPAKVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDD 53 Query: 69 QDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDV 128 D+ + + L + I +EDIQD VE L ++G + R Y++YR+ R+++ Sbjct: 54 PDMPGTVAKAVADALGR-----GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAEL 108 Query: 129 RAAQSHSKSDAPIAPKL 145 R A++ + L Sbjct: 109 RTAKALLGVRDELKLSL 125 >gi|148262268|ref|YP_001228974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter uraniireducens Rf4] gi|146395768|gb|ABQ24401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter uraniireducens Rf4] Length = 565 Score = 369 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 160/628 (25%), Positives = 264/628 (42%), Gaps = 76/628 (12%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEK----EKRAVEFYNL 345 L++L RY L G IE P+ F R+A +A E FY L Sbjct: 1 MELSENALKVLRARYLLKDEQGRVIESPREMFGRIARSVAEAEKFYGDRACYWEERFYEL 60 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 LSS F+ ++PT+ N+G QL++CF+ V D + GIF L+ A++ + GG G ++ Sbjct: 61 LSSLRFLPNSPTIMNAGKSPGQLAACFVLPVEDSMPGIFDTLKNAALILQSGGGTGFSFS 120 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G + G + F+K+ N + QGG R+GA L H DV EF+ + Sbjct: 121 RLRPKADIVRSTGGIASGPVSFMKIYNTATDVIKQGGARRGANMGILRIDHPDVLEFIRV 180 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D + + N + I D +M+ + + + L +P Sbjct: 181 KR----DAKELANFNISLAITDAYMEALRADGEYQLVNPRT------------------- 217 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K ++ A ++ +++ +ETG P + F D N +P G S+N C Sbjct: 218 --------GKSAGRLRAGEVFGEIVASAWETGDPGLVFIDRLNRANPTPAAGSFESTNPC 269 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L C LGS+NL AH DYD L + AVR LD+ ID+N + + Sbjct: 270 GEQPLLPY----EACVLGSLNLAAHVKGGVIDYDALGRDVAVAVRFLDDTIDVNSYPLPA 325 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ + +R IGLG+MG+ L LL IPY +A +A E M FI + AS LA+ER Sbjct: 326 IERMHKGNRKIGLGVMGWADMLVLLGIPYDHEKAFRLAREVMRFIRDASREASCALAKER 385 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G + +F GS++D P + + Sbjct: 386 GVFPNFAGSIYDAPHMPRLRNATTTTIAPTGTL--------------------------- 418 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 + I S I+P + Y + + + +N + + K++ + + ++ Sbjct: 419 -------STIADCSSGIEPLFALAYKRFVLDSELVEINKYFLQMAKEQGFYSVELFQEVM 471 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 G++ ++ IP +K++ TA EI P IE + Q++ D A S + L + Sbjct: 472 RR-GNLRQVKGIPSRVKRLFRTALEILPEHHIEMQAAFQEYTDNAVSKTINLPNRAKKED 530 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + Y A+ G K R + Sbjct: 531 VARAYLLAYEKGCKGITVFRYGARRGTL 558 >gi|154415929|ref|XP_001580988.1| Ribonucleotide reductase, all-alpha domain containing protein [Trichomonas vaginalis G3] gi|121915211|gb|EAY20002.1| Ribonucleotide reductase, all-alpha domain containing protein [Trichomonas vaginalis G3] Length = 614 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 163/635 (25%), Positives = 276/635 (43%), Gaps = 58/635 (9%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 F ++++ RY +H G E P+ F RVA LA ET+KEK +F ++ +F F Sbjct: 20 FTSNAIKVMKARYLVHNEEGKVYETPEQMFTRVAKALASVETDKEKWTKKFEKVMMNFEF 79 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + + TL N+G + +S+C + + D L IF LQ+ A+L + G+G + +R G Sbjct: 80 IPAGRTLANAGAKTDLVSNCVVLHMEDSLDSIFQTLQDAALLQQAGSGIGFPFHKLRPAG 139 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 T G S G + FL++ + + Q G R GA A + H D+ EF+ ++ G Sbjct: 140 YKCKRTLGSSSGPLSFLRIYAEAFRIIQQHG-RHGANMAIMRVDHPDIIEFIHAKEQPG- 197 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + N + D FM+RV +N + G++ Y + A R Sbjct: 198 ---TYENFNFSVAFTDEFMERVIKNDP--------SPWMCKWNGEKMAPRYITRDA-AGR 245 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 E ISA L +++ + + G P F D N +P +G + N C E L+ Sbjct: 246 VENIQPLTISAPELMNEIIHLAWTNGEPGCVFIDTVNKANPLPGLGPIECCNPCGEQFLH 305 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 S CNLG+INL + + D+ L RTA+R+LDNV+ + +++ Sbjct: 306 SG----DACNLGAINLEKFVVDGKIDFKHLEEVTRTAIRMLDNVVSLTKFPVQRVTDMFT 361 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 +R IGLG+MG L L+ +PY S E A+E M+ + AI S L E+G++ +F Sbjct: 362 NNRRIGLGIMGLADLLFLMKLPYDSEEGRACAEEVMKCVQDSAIDESKRLGLEKGSFPNF 421 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + S+W V MRN++ +APT + Sbjct: 422 EKSVWADKVPA-----------------------------------MRNTSLTNVAPTGS 446 Query: 772 IANICGVSQSIDPSYQNLYVKSN-MSGDF-TVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + VS ++P + Y + N ++G VN L L+ + + ++ + G Sbjct: 447 TSMLLDVSSGVEPYFALAYRRGNCLAGPMKPFVNKHLQKALEDCGCFTDKIMDKILET-G 505 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFI 888 ++ N+ +P+ L+++ T+ +I I +R QK A S + E + + Sbjct: 506 TLANVTEVPEQLRRVFVTSLDIKAEDHIAMQARVQKHCCNAISKTINFRREATEDDVRAG 565 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 + + W G K R+ S + T D + Sbjct: 566 FIEGWKNGCKGLTVYRNGSRDAQVLETNVKNDKPV 600 >gi|254478745|ref|ZP_05092114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Carboxydibrachium pacificum DSM 12653] gi|214035310|gb|EEB76015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Carboxydibrachium pacificum DSM 12653] Length = 724 Score = 368 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 176/655 (26%), Positives = 291/655 (44%), Gaps = 83/655 (12%) Query: 299 QILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 ++ DRY L G +E P+ F RVA +A E E+E FY ++S + F+ Sbjct: 11 KVFLDRYALKDREGKPVEKKPEEMFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGR 66 Query: 357 TLFNSGTRHP-QLSSCFLTTV--------PDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 L +GT +CF+ V D I + + + GG+G +W+ + Sbjct: 67 ILAGAGTGREVTYFNCFVIPVEANDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTL 126 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA++ G G S G + ++ AN+ A V QGG R+ A+ L WH D+EEF+ ++K Sbjct: 127 RPRGAYVKGVGGTSSGAVSWMLAANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK 186 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D + N + + D FM+ V Q+ W L PD +D E + E Sbjct: 187 ----DLTKMQQANLSVAVSDAFMEAVAQDKMWKLEFPDTSHPNYDA-----EWKGDLNEW 237 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +A V+++I A LW K++T +E+ P + F + N S ++ + S+N C E Sbjct: 238 KAKGYPTVVYKEIPARELWNKIVTAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGE 297 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 + L VCNLG+INL+A N + ++++L T++ AVR LDNV+D+ + + + K Sbjct: 298 LGLEPY----GVCNLGAINLVAFVENGRINFEELEETVKIAVRFLDNVLDLGAYVLPQNK 353 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R +GLGLMG AL L+++ Y S E+++ +E ++ I A ASVELA+E+G Sbjct: 354 EMAQKLRRVGLGLMGLADALILMNLRYGSEESLKATEEIVKRIRDAAYRASVELAKEKGP 413 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + F + +G I L + ++ + G+RN+ + A Sbjct: 414 FPEFVADKYLKGQ----FIQRLPKD----------------IRDEIAKYGIRNATILTQA 453 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT T + + GVS I+P++ YV+ + +G TV + W Sbjct: 454 PTGTTSILAGVSSGIEPNFAKEYVRKDRTGTHTVKH------------WLAD-------- 493 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 +A E+ P ++ + QK+ID + S + L + +D Sbjct: 494 --------------YPAFVSAHEVTPEEHVKMQAVLQKYIDSSISKTINLPRTATVDDID 539 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 IYR A+ +G K R S V + K + T + P Sbjct: 540 NIYRLAYELGCKGITVYRDGSREGVLVTDTKPQEKTKITERPPVLKGITKRIETP 594 >gi|298529116|ref|ZP_07016519.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfonatronospira thiodismutans ASO3-1] gi|298510552|gb|EFI34455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfonatronospira thiodismutans ASO3-1] Length = 745 Score = 368 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 164/658 (24%), Positives = 284/658 (43%), Gaps = 83/658 (12%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRA-------VEFYN 344 +L RY +G +E + F RVA +A +E + ++ + FY Sbjct: 15 LTPNAKTVLSKRYLRKGDDGQPLEDFKTMFWRVAASVAGEEDKYQESSYNSLDLGRSFYQ 74 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 LL F+ ++PTL N+GT QL++CF+ V D + IF +++ A++ K GG G + Sbjct: 75 LLVEGKFLPNSPTLMNAGTDLGQLAACFVLPVGDSMDEIFDSIKNAALIHKSGGGTGFSF 134 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R + + T G + G + FLK+ N V QGG R+GA L H D+ +F+ Sbjct: 135 SRLRPKDSRVGSTGGIASGPLSFLKIFNTATEQVKQGGTRRGANMGILRVDHPDIMDFIR 194 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + D +++ A + + FM+ V + ++L +P + Sbjct: 195 AK--ERDGELNNFNLSVA--LTEKFMQSVESGSDYSLTAPQNNQETE------------- 237 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 +++A ++ ++ +E+G P I F D N +P +G + S+N Sbjct: 238 --------------RLNAREVFSLLVHKAWESGDPGIIFLDRINKDNPTPGLGEMESTNP 283 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---FDYDKLASTIRTAVRVLDNVIDINCH 641 C E L CNLGSINL ++ D++ L + +VR LDNVID++ + Sbjct: 284 CGEQPLLPY----EACNLGSINLDRFYSPTAEGGIDWEGLREAVHLSVRFLDNVIDLSRY 339 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +E+ + H R IGLG+MGF L L + Y S +++ ++ MEF+ + SAS L Sbjct: 340 PLERITEMVHKTRKIGLGVMGFADLLFQLRVAYDSHRGLQLGEKIMEFVQRESRSASRIL 399 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 AQERG + ++ S++ + RN+ Sbjct: 400 AQERGPFPEYEHSIYARQNLGP----------------------------------YRNA 425 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAM 820 IAPT T++ I G S I+P + + + + G+ VN L LK + + + Sbjct: 426 TTTTIAPTGTLSIIAGCSSGIEPIFALSFTRQVLDGERLLEVNPHLEEALKNTRSYSDKL 485 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + D+ GSI +E + DL+ + TA ++ + ++ + QK+ D A S + L + Sbjct: 486 MEDVAK-KGSIKQMEHLDQDLRDVFVTAMDVPAQYHLKMQAAFQKYTDNAVSKTVNLPFD 544 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + + + IY A+ MG K R ST G + + Sbjct: 545 ATQEDVWQIYWMAYEMGCKGVTVYRDGCRAEQVLSTQDGEKARQDRASGKKSIRERPE 602 >gi|147677926|ref|YP_001212141.1| ribonucleotide reductase, alpha subunit [Pelotomaculum thermopropionicum SI] gi|146274023|dbj|BAF59772.1| Ribonucleotide reductase, alpha subunit [Pelotomaculum thermopropionicum SI] Length = 573 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 162/624 (25%), Positives = 273/624 (43%), Gaps = 84/624 (13%) Query: 298 LQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSF 349 +++L RY NG+ IE P+ RVA +A E + + A F+ ++ + Sbjct: 8 MKVLAGRYLRRDENGNVIETPEEMCWRVARCVAAAEEKFGADCKEVAEWAERFFAVMDAL 67 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N G QL++CF+ + D + IF L+ A++ K GG G D++ +R Sbjct: 68 EFLPNSPTLINCGPAGGQLAACFVLPLADSIEKIFSTLKYTAIIHKSGGGTGFDFSRLRP 127 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 + + GT G++ G + F++V N + QGG R+GA L H D+ EF+ + Sbjct: 128 KNSPVRGTGGRASGPVSFMRVFNAATEEIKQGGVRRGANIGILRADHPDIMEFIACKA-- 185 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D + N + F V + + W L Sbjct: 186 --DEGTFRNFNLSVAATGDFFTAVERGSRWPLSF-------------------------- 217 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 KV+R+ A ++ + +G P + F D N +P +G + ++N C E Sbjct: 218 ---NGKVYREAEAREIFYSIARHAHASGEPGMLFIDSINRANPTPSLGQISATNPCGEQP 274 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L CNLGSINL D+++L ++ AVR LD+VI++N + + K+ Sbjct: 275 LLPY----ESCNLGSINLSRLTKGTGVDWERLGLLVQLAVRFLDDVIEVNRFPLPQIAKA 330 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 R IGLG+MG+ L L IPY S A+ +A+E M FI A AS LA++RG + Sbjct: 331 TLRTRKIGLGVMGWADMLFKLGIPYDSGAALALAEEVMSFILQKAREASAGLARQRGPFP 390 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 S++ S++ + +RN+ IAPT Sbjct: 391 SWRQSVYYPELP------------------------------------LRNATLTTIAPT 414 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELK-QRDLWDEAMISDLKYH 827 +I+ I G S I+P Y +Y + + + V+N + L+ + I Sbjct: 415 GSISAIAGTSSGIEPVYALVYSRLVLDDEKILVINKPFLQYLETEIKPESGENILKKLET 474 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 S+ ++ I + + + TA EI P W ++ + QK+ D A S + L + ++ Sbjct: 475 GVSLQSLPAIKPEARAVFKTALEIAPDWHLKMQAAFQKYTDNAVSKTINLPANATVDEIA 534 Query: 887 FIYRQAWLMGLKTTYYLRSRSATS 910 I+R+A+ +GLK R+ S + Sbjct: 535 SIFRKAYQLGLKGVTVYRTGSRSG 558 >gi|120402409|ref|YP_952238.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium vanbaalenii PYR-1] gi|119955227|gb|ABM12232.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium vanbaalenii PYR-1] Length = 698 Score = 367 bits (942), Expect = 5e-99, Method: Composition-based stats. Identities = 183/802 (22%), Positives = 304/802 (37%), Gaps = 127/802 (15%) Query: 133 SHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDG 192 +P ++ DGTL+ F+ R+E V A + + + Sbjct: 2 KQKTPASPSKWPTQVRRRDGTLVPFDIGRIEAAVSRAACEVACADPDMPGTVA------- 54 Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ +D + I + I+ V AR +A ++ Y Sbjct: 55 VTVADALGSAI-APVEKIQD-----YVEARL-----------------GEAGLDDVARAY 91 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN- 310 Y R+ E A L RD + +L +RY H Sbjct: 92 IIYRNRHAEL-----------------RSAKALLGVRDELKLSLAAVTVLRERYLQHDER 134 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 G E R A +A E A +F L F+ ++PTL N+G+ Sbjct: 135 GHPTESTGEMMDRAARYVAAAEDRYLPGSSARWADQFATSLRRLEFLPNSPTLMNAGSDL 194 Query: 366 PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 LS C + V D L IF L A + + GG G ++ +R G I T G++ G + Sbjct: 195 GLLSGCVVLPVDDSLRSIFSTLGHAAEVQRCGGGTGFAFSRLRPAGDRIASTGGRASGPV 254 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 FL++ + A V+ GG+R+GA L+ H D++EF+ + + +R +++ + Sbjct: 255 SFLELFDTAARVVSLGGRRRGACMGVLDVSHPDIQEFVTAKTQSP-ERLSHFNLSVG--V 311 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V + L +P + K+SAV L Sbjct: 312 SDSFMRAVERGDVHRLVNPRT---------------------------GRTVAKVSAVEL 344 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + + G P + F D N +P +G + ++N C E+ L + CNLGS+ Sbjct: 345 FDVICESAHACGDPGLVFLDTVNRANPVPRLGRIEATNPCGEVPLLPN----ESCNLGSL 400 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL + + D+ +L AVR LD+VID++ + ++ + R IGLG+MG Sbjct: 401 NLARMVTDGRIDWCRLRDVTALAVRFLDDVIDVSRYPFDELDAAGRATRKIGLGVMGLAE 460 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L L IPY S +AV +A M + A S +LA ERG + ++ S + Sbjct: 461 VLASLGIPYDSDDAVRLAGRIMGRVQRVAHETSEQLAAERGPFPAYPDSRLTRP------ 514 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 RN+ ++APT TI+ I G + I+P Sbjct: 515 --------------------------------RRNAQLTSVAPTGTISLIAGTTAGIEPM 542 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y ++ + VN ++R + + +I+++ G G +P D++ Sbjct: 543 FAIAYTRAVVGRHLLEVNPCFDRMARRRGFYTDELITEIARSGGVRGYRGDLPADVRAAF 602 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 TA EI P W + + Q+ +D A S + L E + + IY AW +K R Sbjct: 603 PTAAEISPEWHLRMQAAVQRHVDAAVSKTVNLPEAATADDVRAIYLSAWKAKVKGITVYR 662 Query: 905 SRSATSVEKSTLKGVDGKLNAV 926 S S +A Sbjct: 663 YGSRQGQVLSYAAPPPQVPHAD 684 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%) Query: 20 YPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQT 79 P QV +R+G + FD +I A+ +A V + D+ + Sbjct: 5 TPASPSKWPTQVRRRDGTLVPFDIGRIEAAVSRAACEV-------ACADPDMPGTVAVTV 57 Query: 80 VTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDA 139 L + I +E IQD VE L ++G + R Y++YR +++R+A++ Sbjct: 58 ADAL-----GSAIAPVEKIQDYVEARLGEAGLDDVARAYIIYRNRHAELRSAKALLGVRD 112 Query: 140 PIAPKL 145 + L Sbjct: 113 ELKLSL 118 >gi|260185444|ref|ZP_05762918.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis CPHL_A] Length = 693 Score = 367 bits (942), Expect = 5e-99, Method: Composition-based stats. Identities = 185/780 (23%), Positives = 302/780 (38%), Gaps = 132/780 (16%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202 K+ DGTL+ F+ R+E V A + + V + G++ + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I AR +A ++ +Y Sbjct: 64 IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320 + +L A L RD + +L +RY LH G E Sbjct: 85 ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137 Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 R A +A E + E A F LL + F+ ++PTL NSGT L+ CF+ Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D L IF L + A L + GG G ++ +R G + T G + G + FL++ + A Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ GG+R+GA A L+ H D+ +F+ + + + N + + D F++ V + Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N L +P K+ ++ A L+ + Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 G P + F D N +P G + ++N C E+ L CNLGSINL A+ + Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+D+L AVR LD+VID++ + + ++ R IGLG+MG L L IPY Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYD 463 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EAV +A M I A +AS LA+ERGA+ +F S + + Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 RN+ ++APT TI+ I G + I+P + + ++ + Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 VN + R + + +I+++ G + R+P +++ TA EI P W Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606 Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + Q+ ++ A S + L + + IY AW +K R S S Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLS 666 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A V + D+ + + L + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ + L Sbjct: 57 -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111 >gi|15607710|ref|NP_215084.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium tuberculosis H37Rv] gi|148660339|ref|YP_001281862.1| putative ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|148821771|ref|YP_001286525.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis F11] gi|167968357|ref|ZP_02550634.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis H37Ra] gi|215402336|ref|ZP_03414517.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 02_1987] gi|215429402|ref|ZP_03427321.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis EAS054] gi|215444680|ref|ZP_03431432.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T85] gi|218752208|ref|ZP_03531004.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis GM 1503] gi|254230912|ref|ZP_04924239.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis C] gi|254363528|ref|ZP_04979574.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis str. Haarlem] gi|254549524|ref|ZP_05139971.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199573|ref|ZP_05767064.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T46] gi|260203727|ref|ZP_05771218.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis K85] gi|289441955|ref|ZP_06431699.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T46] gi|289573162|ref|ZP_06453389.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis K85] gi|289744283|ref|ZP_06503661.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 02_1987] gi|289752609|ref|ZP_06511987.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis EAS054] gi|289756647|ref|ZP_06516025.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T85] gi|289760689|ref|ZP_06520067.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis GM 1503] gi|294996080|ref|ZP_06801771.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis 210] gi|297633060|ref|ZP_06950840.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis KZN 4207] gi|297730037|ref|ZP_06959155.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis KZN R506] gi|306774674|ref|ZP_07413011.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu001] gi|306779425|ref|ZP_07417762.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu002] gi|306783211|ref|ZP_07421533.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu003] gi|306787581|ref|ZP_07425903.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu004] gi|306792131|ref|ZP_07430433.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu005] gi|306796318|ref|ZP_07434620.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu006] gi|306802177|ref|ZP_07438845.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu008] gi|306806386|ref|ZP_07443054.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu007] gi|306966585|ref|ZP_07479246.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu009] gi|306970778|ref|ZP_07483439.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu010] gi|307078502|ref|ZP_07487672.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu011] gi|307083064|ref|ZP_07492177.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu012] gi|313657365|ref|ZP_07814245.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium tuberculosis KZN V2475] gi|81669533|sp|O53767|NRDZ_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase nrdZ gi|2909629|emb|CAA17441.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium tuberculosis H37Rv] gi|124599971|gb|EAY58981.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis C] gi|134149042|gb|EBA41087.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis str. Haarlem] gi|148504491|gb|ABQ72300.1| putative ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|148720298|gb|ABR04923.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis F11] gi|289414874|gb|EFD12114.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T46] gi|289537593|gb|EFD42171.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis K85] gi|289684811|gb|EFD52299.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 02_1987] gi|289693196|gb|EFD60625.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis EAS054] gi|289708195|gb|EFD72211.1| ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium tuberculosis GM 1503] gi|289712211|gb|EFD76223.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis T85] gi|308216780|gb|EFO76179.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu001] gi|308327639|gb|EFP16490.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu002] gi|308331994|gb|EFP20845.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu003] gi|308335781|gb|EFP24632.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu004] gi|308339387|gb|EFP28238.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu005] gi|308343263|gb|EFP32114.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu006] gi|308347155|gb|EFP36006.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu007] gi|308351070|gb|EFP39921.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu008] gi|308355729|gb|EFP44580.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu009] gi|308359684|gb|EFP48535.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu010] gi|308363589|gb|EFP52440.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu011] gi|308367225|gb|EFP56076.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis SUMu012] gi|323721044|gb|EGB30108.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis CDC1551A] gi|326902399|gb|EGE49332.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis W-148] Length = 692 Score = 367 bits (942), Expect = 5e-99, Method: Composition-based stats. Identities = 185/780 (23%), Positives = 302/780 (38%), Gaps = 132/780 (16%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202 K+ DGTL+ F+ R+E V A + + V + G++ + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I AR +A ++ +Y Sbjct: 64 IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320 + +L A L RD + +L +RY LH G E Sbjct: 85 ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137 Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 R A +A E + E A F LL + F+ ++PTL NSGT L+ CF+ Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D L IF L + A L + GG G ++ +R G + T G + G + FL++ + A Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ GG+R+GA A L+ H D+ +F+ + + + N + + D F++ V + Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N L +P K+ ++ A L+ + Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 G P + F D N +P G + ++N C E+ L CNLGSINL A+ + Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+D+L AVR LD+VID++ + + ++ R IGLG+MG L L IPY Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYD 463 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EAV +A M I A +AS LA+ERGA+ +F S + + Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 RN+ ++APT TI+ I G + I+P + + ++ + Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 VN + R + + +I+++ G + R+P +++ TA EI P W Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606 Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + Q+ ++ A S + L + + IY AW +K R S S Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLS 666 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A V + D+ + + L + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ + L Sbjct: 57 -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111 >gi|48843724|ref|YP_025104.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus - isolate China] gi|44829131|gb|AAS47821.1| ribonucleotide reductase alpha subunit [Lymphocystis disease virus - isolate China] Length = 547 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 170/603 (28%), Positives = 247/603 (40%), Gaps = 95/603 (15%) Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 +++A + + E + Y F+ S+P L NS T SCF+ V D Sbjct: 24 ELLLKLAKKYSGGDKTLET---KLYRYSIKGWFVYSSPILSNSKT--GLPISCFIMDVKD 78 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 DL I E L+ GG W I KS G +PF+ + +A Sbjct: 79 DLLHIIDHSVEMRWLSINGGGCAGYWGN-------IRAPCDKSCGPMPFMHTLDADVLAY 131 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QG RKG+ AYL+ H D+ EF+++R GD R+ +++ I D FMK V + Sbjct: 132 KQGSTRKGSYAAYLDISHPDIAEFINMRTPVGDLNRKNLNLHHGVNISDNFMKAVENDLN 191 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 W L P V ISA+ LWR +L F TG Sbjct: 192 WDLKDPCT---------------------------GSVKETISAMELWRSLLETRFRTGE 224 Query: 559 PWITFKDPCNIRSP---QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 P++ F D N + + + SSNLC EI L + TAVC L S+NL + Sbjct: 225 PYLNFIDEANRKLHPALKAKNLKIKSSNLCNEIHLPTDETRTAVCCLASLNLEKY----- 279 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKA----KKSNHTHRAIGLGLMGFQSALHLLH 671 D K + + V +L+NV+D+ S R+IGLG G+ L Sbjct: 280 -DDWKDSDVVECCVTMLNNVLDVFIEKAPPQLSKAINSAKLERSIGLGTAGWAYYLMKHQ 338 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 IP+ S A+ I A+ AS L + G Sbjct: 339 IPFESFNAISCTKIIFGNIKTKALKASKSLCKLYGEP----------------------- 375 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 + +K G+RN++ +AIAP + + I S SI+P N YV Sbjct: 376 -------------------EDLKNYGVRNAHLLAIAPNSNTSCILNTSPSIEPISGNAYV 416 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 +G +VN +L L R D + DGS+ ++ + D K + TA+EI Sbjct: 417 HKTRAGTHLIVNPYLKRVLIDRGKNDSETWDSIVNKDGSVQHLPFLTDREKLVFKTAYEI 476 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATS 910 D LIE A+ RQK+I Q QSLNL+ + +K L ++ AW +G K YYLR+ ++ S Sbjct: 477 DQNVLIEQAALRQKYICQGQSLNLFFPPHTQRKILHKVHFDAWKLGCKGLYYLRTAASKS 536 Query: 911 VEK 913 E Sbjct: 537 SEN 539 >gi|108798058|ref|YP_638255.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. MCS] gi|119867154|ref|YP_937106.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. KMS] gi|126433719|ref|YP_001069410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. JLS] gi|108768477|gb|ABG07199.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. MCS] gi|119693243|gb|ABL90316.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. KMS] gi|126233519|gb|ABN96919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Mycobacterium sp. JLS] Length = 693 Score = 366 bits (940), Expect = 8e-99, Method: Composition-based stats. Identities = 179/773 (23%), Positives = 293/773 (37%), Gaps = 126/773 (16%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ DGTL+ F++ R+E V A Sbjct: 9 RVRRRDGTLVPFDAGRIEAAVLRA------------------------------------ 32 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +R + +P+ AR + + L P A +Q + V Sbjct: 33 AREVACDDPDMPGAVARTVADTL----------GPGTADVETIQDFVEARLGEAGLDDVA 82 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLH-INGSRIEMPQAFFMR 323 + DL A L RD + +L +RY L G +E R Sbjct: 83 RAYIVYRRDRADL-RAAKALLGVRDELKLSLAAVTVLRERYLLRDQRGRPVESTGEMMDR 141 Query: 324 VAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 A +A E E F L F+ ++PTL N+GT LS CF+ V D Sbjct: 142 AARCVAAAEDAYEPGSSAEWTDRFSRGLRDLEFLPNSPTLMNAGTDLGLLSGCFVLPVED 201 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L IF L + A + + GG G ++ +R G I T G + G +PF+ + + A V Sbjct: 202 SLRSIFATLAKAAEIQRAGGGTGFSFSRIRPDGDPITTTTGSACGPVPFVGLFDAAAQVV 261 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 + GG+R+GA A L+ H D+ +F+ + + + N + + D FM+ V Sbjct: 262 SLGGRRRGACMAVLDVSHPDIYDFIASKSGST---AKLPHFNLSIGVGDAFMRAVESGGM 318 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 L +P K ++ A L+ + G Sbjct: 319 HRLVNPRT---------------------------GKTAARVRADELFAAICEAANHGGD 351 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDY 618 P + F D N +P G + ++N C E+ L CNLGS+NL ++ D+ Sbjct: 352 PGLVFLDTINRANPVPQRGRIEATNPCGEVPLLPY----ESCNLGSVNLTRMLTGDEVDW 407 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 +L + AVR D+VID++ + + ++ R IGLG+MG L L IPY S E Sbjct: 408 TRLTAVTEMAVRFFDDVIDVSRYPFAELGEATRATRKIGLGVMGLAEMLARLGIPYDSEE 467 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A+ + D M I A AS LA++RG++ +F S Sbjct: 468 ALRLTDRVMRHIQRAAHRASRRLAEDRGSFPAFPDSR----------------------- 504 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 V++ RN+ ++APT TI+ I G + I+P + Y ++ + Sbjct: 505 -------------LVRSGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAYTRAILGRH 551 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 VN + R + + +I+++ G + +P +++ TA EI P W + Sbjct: 552 LLEVNPTFDRLARDRGFYRDELITEIAERGG-VRRCPSLPAEVRSAFPTATEISPDWHLR 610 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + Q+ +D A S + L + + IY +AW +K R S Sbjct: 611 MQAVVQRHVDAAVSKTVNLPSTATPADVRDIYLKAWKAKVKGVTVYRYGSRED 663 Score = 98.0 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD +I A+++A V + D+ + L Sbjct: 9 RVRRRDGTLVPFDAGRIEAAVLRAAREV-------ACDDPDMPGAVARTVADTL-----G 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 +E IQD VE L ++G + R Y++YR +R+D+RAA++ + L Sbjct: 57 PGTADVETIQDFVEARLGEAGLDDVARAYIVYRRDRADLRAAKALLGVRDELKLSL 112 >gi|215410107|ref|ZP_03418915.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium tuberculosis 94_M4241A] gi|298524058|ref|ZP_07011467.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis 94_M4241A] gi|298493852|gb|EFI29146.1| ribonucleoside-diphosphate reductase [Mycobacterium tuberculosis 94_M4241A] Length = 692 Score = 366 bits (940), Expect = 9e-99, Method: Composition-based stats. Identities = 184/780 (23%), Positives = 302/780 (38%), Gaps = 132/780 (16%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202 K+ DGTL+ F+ R+E V A + + V + G++ + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I AR +A ++ +Y Sbjct: 64 IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320 + +L A L RD + +L +RY LH G E Sbjct: 85 ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137 Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 R A +A E + E A F LL + F+ ++PTL NSGT L+ CF+ Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D L IF L + A L + GG G ++ +R G + T G + G + FL++ + A Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ GG+R+GA A L+ H D+ +F+ + + + N + + D F++ V + Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N L +P K+ ++ A L+ + Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 G P + F D N +P G + ++N C E+ L CNLGSINL A+ + Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+D+L AVR LD+VID++ + + ++ R +GLG+MG L L IPY Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKVGLGVMGLAELLAALGIPYD 463 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EAV +A M I A +AS LA+ERGA+ +F S + + Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 RN+ ++APT TI+ I G + I+P + + ++ + Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 VN + R + + +I+++ G + R+P +++ TA EI P W Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606 Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + Q+ ++ A S + L + + IY AW +K R S S Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLPATATVDDVRAIYVAAWKAKVKGITVYRYGSREGQVLS 666 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A V + D+ + + L + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ + L Sbjct: 57 -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111 >gi|303245840|ref|ZP_07332122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio fructosovorans JJ] gi|302492623|gb|EFL52491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio fructosovorans JJ] Length = 743 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 170/635 (26%), Positives = 286/635 (45%), Gaps = 83/635 (13%) Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETE-------KEKRAVEFYNLLSSFHFM 352 L RY +G E ++ F RVA +A E E A FY+L++ F+ Sbjct: 23 LAKRYLQKGPDGEPTEDARSLFWRVATAIAAMEAHYDKSPFTPEALARAFYDLMTGMRFL 82 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+G QL++CF+ V D + IF A++ A++ K GG G ++ +R + Sbjct: 83 PNSPTLMNAGAPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKKS 142 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F+++ N V QGG R+GA L H D+ EF+ ++ + Sbjct: 143 RVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRIDHPDILEFITCKERENE- 201 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + N + + + FM+ V + + L P + Sbjct: 202 ---LQNFNISVALTERFMQAVEKGEDYDLVDPRD-------------------------- 232 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 +V +A ++ ++ +E+G P I F D N +P +G + S+N C E L Sbjct: 233 -KRVVGSQNAAEVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLLP 291 Query: 593 SSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 CNLGSINL F + D+ L T+ AVR LDNVID + + +++ + Sbjct: 292 Y----EACNLGSINLSVFFDPEAEDGIDWKGLTETVHLAVRFLDNVIDASRYPLDQITEM 347 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 +R IGLG+MGF L+LL IPY S EA+ +A++ ME I A SAS LA ERG + Sbjct: 348 VRANRKIGLGIMGFADLLYLLRIPYDSTEALSLAEKVMETIQGEARSASKTLAAERGPFP 407 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 ++ S++ + + RN+ IAPT Sbjct: 408 AYAESVF-----------------GKRNLGPY-----------------RNATTTTIAPT 433 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ I G S I+P + + + M G+ N V +++ + E+++ ++ Sbjct: 434 GTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANPHFVAAMQEAGAYSESLMEEVTR-K 492 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 GSI +I +P++L+ + TA +I+P+W ++ + QK+ D A S + L + + + Sbjct: 493 GSIAHIGMLPEELRDVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNKATKEDIRE 552 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 IY A+ +G K R T +G + Sbjct: 553 IYWLAYELGCKGVTVYRDGCKAGQVLCTGEGGQAE 587 >gi|291336892|gb|ADD96421.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 431 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 201/418 (48%), Positives = 283/418 (67%), Gaps = 6/418 (1%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 + + +G L N ++ + E AC L++VS ++ + + YD ++ +++ ALI Sbjct: 5 ILVKKRNGRLQELNIDKINLCAERACEDLENVSWSEIVLDAHVQFYDKITTKEIDKALIM 64 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 S+R IEKEPNY+ +R LL + +EV K H++ F + I+ V Sbjct: 65 SARQKIEKEPNYSYAASRLLLATIHKEVFGESRDKDVFEEQHKLS------FIKNIKSLV 118 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 K +L E ++ FDL L+ L +RD F+YLGLQI+YDRY H+N R+E PQ+F+MRV Sbjct: 119 KEEILDERLLSFDLKMLSEALVTDRDLKFKYLGLQIIYDRYLHHVNERRLETPQSFWMRV 178 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF 384 AMGLAL E +K ++A+EFYN LS+F CSTPTLFNSG+ H QLSSC+L T D + GIF Sbjct: 179 AMGLALNEKDKNEKAIEFYNALSTFSLCCSTPTLFNSGSNHSQLSSCYLNTFDDSIDGIF 238 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 L + A +KY+GGLG D T R +++ GTNGKS G+IP+LK+ NDT +AV+QGGKR Sbjct: 239 EGLWQEARKSKYAGGLGFDCTNFRASNSYVKGTNGKSSGLIPWLKIYNDTLIAVDQGGKR 298 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 GA C+YLE WH+D+E+FL+L+KNTGD+RRR HDMNTANWIPDLF+++V +N W LFSP Sbjct: 299 PGAGCSYLEPWHLDIEDFLELKKNTGDERRRCHDMNTANWIPDLFIRKVQKNEDWYLFSP 358 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + +LH+ YG EF+ Y+ Y + AD G+++ ++ + A LW+KML +LFETGHPW+T Sbjct: 359 SDTRELHETYGNEFDKIYKKYCKLADSGDLENYKIVKAKDLWKKMLRVLFETGHPWMT 416 >gi|258404144|ref|YP_003196886.1| ribonucleotide-diphosphate reductase subunit alpha [Desulfohalobium retbaense DSM 5692] gi|257796371|gb|ACV67308.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfohalobium retbaense DSM 5692] Length = 742 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 171/660 (25%), Positives = 289/660 (43%), Gaps = 82/660 (12%) Query: 290 DFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR-------AVE 341 D + +L RY G +E PQ F RVA +A ET E+ A Sbjct: 9 DLSLSENAELVLRKRYVRKGPEGEEMETPQELFWRVAAAIAASETAYEQTPFSQEALARR 68 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++S F ++PTL N+GT QL++CF+ V D + IF A++ A++ K GG G Sbjct: 69 FYDLMASCRFFPNSPTLMNAGTELGQLAACFVLPVGDSMEEIFDAIKYAALIHKSGGGTG 128 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G I FL++ N V QGG R+GA L H D+ E Sbjct: 129 FSFSRLRAADSRVGSTGGVASGPISFLRIFNTATEQVKQGGTRRGANMGILRVDHPDILE 188 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ +++ G+ + N + + + FM+RV +A + L +P Sbjct: 189 FIRVKEREGELN----NFNLSVALTEDFMRRVEADAEYPLIAPQS--------------- 229 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 K ++ A ++ ++ +E+G P I F D N +P +G + + Sbjct: 230 ------------EKEVGRLRAREVFTLLVQKAWESGDPGIIFLDRINRDNPTPQLGDIEA 277 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDIN 639 +N C E L CNLGSINL D++ L ++ AVR LDNVID + Sbjct: 278 TNPCGEQPLLPY----EACNLGSINLSRFADAPAQELDWEGLRESVHLAVRFLDNVIDAS 333 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + +R IGLG+MG+ L+ L I Y S +A+ + ++ M+FI A SAS Sbjct: 334 VYPLPQITDQVKRNRKIGLGIMGWADLLYQLRIAYDSRQALSLGEKVMDFIQKEARSASK 393 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA+ERG + ++ S++ + R Sbjct: 394 DLARERGPFPAYADSVFGKQNLGP----------------------------------YR 419 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDE 818 N+ IAPT T++ + G S I+P + +V+ M G+ N +++ + Sbjct: 420 NATTTTIAPTGTLSILAGCSSGIEPLFALSFVREVMDGERLVETNPIFRQAMEEAGCASQ 479 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ ++ G++ ++E +PDD++ + TA +ID + + QK+ D A S + L Sbjct: 480 RLLDEVAR-KGTVRDMELVPDDMRNVFVTAMDIDGEAHLRMQAAFQKYTDNAVSKTVNLP 538 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 E + + + IY A+ G K R + ST + + P Sbjct: 539 HEATQEDIRHIYWLAYEQGCKGVTVYRDGCKSVQVLSTEESRSQRQAEEEGKAPVRQRPD 598 >gi|225164910|ref|ZP_03727127.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800487|gb|EEG18866.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 382 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 187/382 (48%), Positives = 253/382 (66%), Gaps = 12/382 (3%) Query: 585 CTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 CTEITLN+S +ETAVCNLGSI L H + D+ KL TIRTAVR LDNVIDIN + Sbjct: 1 CTEITLNTSKDETAVCNLGSIILETHLHPDGSLDHAKLRDTIRTAVRALDNVIDINFYPT 60 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 A SN HR IGLG+MG +AL+ +ASPEAVE DE+ME I++HA AS +LA Sbjct: 61 RAAGTSNRRHRPIGLGVMGLANALYQRGHAFASPEAVEFNDEAMEAIAYHAYEASSDLAA 120 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG YSS++GS W +G+ P D++ LL + R + + R +L W L+ ++ GMRNSN Sbjct: 121 ERGTYSSYEGSKWHRGILPQDTLDLLEQERGIPVDVPRGGKLDWAPLRAKIAAQGMRNSN 180 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +AIAPTATI+NI S I+P+Y+NL+VKSN+SG+F ++N +LV +LK R+LW + M+ Sbjct: 181 VLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEFVILNPWLVRDLKARNLWTQDMLD 240 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSG 882 +LKY DG + +IE IP DL++ + TAF ID W+I +A+RRQKWIDQ+QS+NL+L P Sbjct: 241 NLKYFDGELSDIESIPADLREKYRTAFGIDHQWVIAAAARRQKWIDQSQSVNLWLATPDL 300 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH-----S 937 K L +YR AW GLKTTYYLR+ A+++EK+T+ T P +S+ + Sbjct: 301 KTLSHMYRHAWHAGLKTTYYLRTLGASNIEKATVAVKKEVRGIASGTTPAASSPGVRAYT 360 Query: 938 LGIPSSCTSD-----TECEVCQ 954 +C+ + ECE CQ Sbjct: 361 AEEKLACSIEAMRNGGECEACQ 382 >gi|220929802|ref|YP_002506711.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium cellulolyticum H10] gi|220000130|gb|ACL76731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium cellulolyticum H10] Length = 795 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 172/674 (25%), Positives = 294/674 (43%), Gaps = 95/674 (14%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFY 343 +++L RY NG+ +E + F RVA + E EFY Sbjct: 1 MKLSENAVKVLEKRYLEKDENGNLLEDCEGMFRRVAKAIASADAAYTDEKGLAVIEHEFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 N++++ F+ ++PTL N+G QLS+CF+ V D + GIF +++ A++ K GG G Sbjct: 61 NMMANLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R G+ ++ T G + G + F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRAKGSAVNSTGGVASGPVSFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + + + + N + I + FM+ V N + L P Sbjct: 181 SCKSDNSE----ITNFNLSVGITEDFMRAVEHNLEYELLDPRT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 K K++A ++ ++ M +E G P I F D N + +G + S+N Sbjct: 220 ----------KKPVAKLNAREVFDIIVEMAWENGEPGIIFLDRLNRDNVTPKLGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCH 641 C E L CNLGSINL + D++KL T+R AVR LDNVI++N + Sbjct: 270 PCGEQPLLPY----EACNLGSINLYNMMDDAHKGLDFEKLEYTVRKAVRFLDNVIEVNKY 325 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + + + R IGLG+MG+ L L + Y S A+++AD+ M FI+ A AS L Sbjct: 326 PLPEIDRMTRGTRKIGLGVMGWADTLCALGVAYNSQAAIDLADKVMSFINDTAQKASQNL 385 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ +G + ++ S++ Q K +K MRN+ Sbjct: 386 AELKGVFPFYEDSIYAQ--------------------------------KGIK---MRNA 410 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAM 820 IAPT T++ I GVS I+P + Y+++ M + + VN + + + + Sbjct: 411 TTTTIAPTGTLSLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKEAALSGNFYSDEL 470 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + G++ N+ +P ++++I TA ++ P W ++ + Q+ D A S + L + Sbjct: 471 MKKIARV-GTVKNMNEVPTNVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNLSHD 529 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 + + ++ A+ K R S + K + NA + + Sbjct: 530 ATTDDVREVFTLAYKTQCKGVTIYRDGSRDLQVLNIGKVKGKEENADKSLPAGENIY--- 586 Query: 940 IPSSCTSDTECEVC 953 C+ C Sbjct: 587 ----------CDSC 590 >gi|154149571|ref|YP_001403189.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Methanoregula boonei 6A8] gi|153998123|gb|ABS54546.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoregula boonei 6A8] Length = 741 Score = 361 bits (927), Expect = 3e-97, Method: Composition-based stats. Identities = 167/652 (25%), Positives = 261/652 (40%), Gaps = 97/652 (14%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVA LA E E+ FY + S F+ ++PTL N+GT QLS+CF VPD + G Sbjct: 29 RVASALADDENER----ARFYEAMISLRFLPNSPTLMNAGTEIGQLSACFTLPVPDTIDG 84 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF A++E A++ K GG G +++ +R G+ + T+G + G I F++V N + QGG Sbjct: 85 IFDAMKEGAIIHKTGGGTGYNFSHIRPEGSPVQSTDGVASGPISFMRVFNAATDVIKQGG 144 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R+GA L WH D+ F+ +K G+ + N + + D FM V + Sbjct: 145 RRRGANMGILNVWHPDILAFISAKKKEGE----FSNFNISVMVNDKFMDLVAAKS----- 195 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 FE + KI+ +W ++ +++ G P I Sbjct: 196 ---------------FET--------VWLTKGGTGEKITVGQIWNGIVEGIWKNGEPGIL 232 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 F D N +P +G + ++N C E L C LGSINL A FD D L Sbjct: 233 FYDEINRHNPTPQLGEIDTTNPCGEQPLLPY----ESCVLGSINLAACVREGAFDEDLLR 288 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T R A R LD VI+ N I + ++ R IGLG+MG A+ +L + Y S + Sbjct: 289 DTSRMATRFLDLVIEKNVFPIPQIAEATRKTRKIGLGVMGVHDAMLMLGLSYDSEKGRAW 348 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + M+ I+ AI S LA++ G + +++GS+W Sbjct: 349 CEWVMKVITETAIEESHRLAEKLGTFPAWQGSIW-------------------------- 382 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTV 801 K +RN+ +APT TI+ + G S I+P + Y + N G F + Sbjct: 383 -----------KDYEVRNAAMTTVAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKVFVI 431 Query: 802 VNSFLVNELKQ----RDLWDEAMISD------LKYHDGSIGNIERIPDDLKKIHATAFEI 851 VN L + + GS+ ++ + + + + TA +I Sbjct: 432 VNPVFKEALLHTLTGMGYAGDEREKKAGEVISHVHETGSMQDVAWLSAEFRGLFKTALDI 491 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 I + QK++ + S + + + AW +GLK R+ S Sbjct: 492 PWREHILMQACFQKYVHASISKTINMPGSATKDDCAEALLMAWKLGLKGITIYRTGSRED 551 Query: 911 ---VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV-----CQ 954 K K V T IPS + CQ Sbjct: 552 VVLALKEKEKAPASAPAPATVAASPMRTVPEKIPSLSIDRPKELAGRTYLCQ 603 >gi|332702239|ref|ZP_08422327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio africanus str. Walvis Bay] gi|332552388|gb|EGJ49432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio africanus str. Walvis Bay] Length = 744 Score = 361 bits (927), Expect = 3e-97, Method: Composition-based stats. Identities = 175/637 (27%), Positives = 301/637 (47%), Gaps = 85/637 (13%) Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFM 352 L RY +G+ +E Q F RVA +A +E + ++ A EFY+L++SF F+ Sbjct: 23 LRKRYLRKGPDGNPVEDVQGMFWRVASAIASEEVKYAKSSFDVDRLAREFYSLMTSFRFL 82 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+GT QL++CF+ V D + IF ++++ A++ K GG G ++ +R GA Sbjct: 83 PNSPTLMNAGTELGQLAACFVLPVGDSMEDIFASVRDAALIHKSGGGTGFSFSRLRREGA 142 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F+K+ N V QGG R+GA L H D+ +F+ ++ G+ Sbjct: 143 RVGSTGGVASGPVSFMKIFNTATEQVKQGGTRRGANMGILRVDHPDILKFISCKEREGEL 202 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + N + + + FM+ V + ++L +P + Sbjct: 203 N----NFNISVALTEKFMQAVEADEEYSLIAPQNGQEDG--------------------- 237 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 ++ A ++ ++ +E+G P I F D N +P G + S+N C E L Sbjct: 238 ------RLRAREVFALLVRKAWESGDPGIVFLDRINRDNPTPKQGEIESTNPCGEQPLLP 291 Query: 593 SSEETAVCNLGSINLLAHFANNQFD---YDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 CNLGSINL + N D +D+ AVR LDNVID + + ++K ++ Sbjct: 292 Y----EACNLGSINLATIYDPNSDDGIDWDEFKRITHLAVRFLDNVIDASRYPLDKITET 347 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 +R IGLGLMG+ L L +PY S EA+ + ++ M+F+ + +AS LA+ERGA++ Sbjct: 348 VGRNRKIGLGLMGWADLLFQLRVPYNSQEALILGEKVMKFLQAESKAASKILAEERGAFA 407 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAP 768 ++ S + K +G RN+ IAP Sbjct: 408 AYDESTYAD-----------------------------------KKVGPYRNATTTTIAP 432 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T T++ I G S I+P + + ++ M G+ N + L++ + + +A++ D+ Sbjct: 433 TGTLSIIAGCSSGIEPLFALSFTRNVMDGEKLVEANPYFEQALRETESYSKALMEDVAK- 491 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 GSI ++E +PDD++++ TA +++P + ++ + QK+ D A S + L S + + Sbjct: 492 KGSIAHMELLPDDIRRVFVTAHDVEPTYHLKMQAAFQKFTDNAVSKTVNLPSSASEEDIR 551 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 IY A+ MG K R S T + K Sbjct: 552 EIYWMAYEMGCKGVTVYRDGCKASQVLCTGEAEAKKA 588 >gi|323700021|ref|ZP_08111933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. ND132] gi|323459953|gb|EGB15818.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio desulfuricans ND132] Length = 749 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 176/664 (26%), Positives = 301/664 (45%), Gaps = 86/664 (12%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVE------- 341 D +L RY G E + F RVA +A +E + E+ V+ Sbjct: 12 DPIINENAKIVLQRRYQRKDTEGVVYETVKELFWRVASAIAAEEAKYERSTVKPAKLARD 71 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++S+ F+ ++PTL N+GT QL++CF+ V DD+ GIF A++ AM+ K GG G Sbjct: 72 FYDLMTSYRFLPNSPTLMNAGTDLGQLAACFVLPVADDIEGIFDAVKHAAMIHKSGGGTG 131 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G + FLK+ N + QGG R+GA L H D+ E Sbjct: 132 FAFSRLRAKDSVVGSTGGVASGPLSFLKIFNCATEQIKQGGTRRGANMGILRIDHPDIME 191 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ + N + + + FM+ V + A + L +P+ Sbjct: 192 FIKAKERDGELN----NFNLSVGLTEAFMQAVNEKADYNLIAPNT--------------- 232 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 + ++A ++ ++ +E+G P I F D N +P +G + S Sbjct: 233 ------------GEAVGTLNARDVFNILVQKAWESGDPGIVFLDRINRDNPTPALGEIES 280 Query: 582 SNLCTEITLNSSSEETAVCNLGSINL------LAHFANNQFDYDKLASTIRTAVRVLDNV 635 +N C E L CNLGSINL + +++ D+D+L I +VR LDNV Sbjct: 281 TNPCGEQPLLPY----EACNLGSINLGLCFAKGRNGKDSEIDWDELKRIIHLSVRFLDNV 336 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID + + +++ + +R IGLG+MG+ L+ L IPY S AV++A+ M+F+ + Sbjct: 337 IDASVYPLDQITEMVGKNRKIGLGVMGWADLLYQLQIPYNSQTAVDMAERVMKFVQAESR 396 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 SAS +LA ERG + ++ S + + + Sbjct: 397 SASKQLATERGQFPAYPESTF-----------------GKANLGPY-------------- 425 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814 RN+ IAPT T++ I G S ++P + +V++ M D N + L D Sbjct: 426 ---RNATTTTIAPTGTLSIIAGCSSGVEPLFALSFVRNVMDNDKLVETNPYFEAALNSAD 482 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + ++ ++ GSI ++ +P+ L+ ++ T+ +I+P+W ++ + QK+ D A S Sbjct: 483 AYSGKLMEEIAKV-GSIKKMDHLPEHLRHVYVTSMDIEPIWHLKMQAAFQKYTDNAVSKT 541 Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 + L + + + IY +A+ G K R S TS T G K A Sbjct: 542 VNLPNSATKEDIWDIYWKAYEYGCKGVTVYRDGSKTSQVLCTGDGDKKKEAAKQGKSIVK 601 Query: 934 STHS 937 Sbjct: 602 DRPD 605 >gi|254173913|ref|ZP_04880584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Thermococcus sp. AM4] gi|214032162|gb|EEB72993.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Thermococcus sp. AM4] Length = 1361 Score = 360 bits (924), Expect = 6e-97, Method: Composition-based stats. Identities = 137/559 (24%), Positives = 250/559 (44%), Gaps = 56/559 (10%) Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 + G +++ +R G + T G + G + F+ + + + + QGG R+GA LE Sbjct: 750 MVFVHNTGLNFSKLRPEGDFVGSTAGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILE 809 Query: 454 TWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHD 512 WH D+E+F+ + +NTG + +++ W + F + + + + L +P Sbjct: 810 VWHPDIEKFIHAKERNTGTNVLSNFNISVGIW--EDFWEALKEGKRYPLVNPRT------ 861 Query: 513 LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 + ++I +L+ ++ M + P + F D N R+ Sbjct: 862 ---------------------GEKVKEIDPKSLFEELAFMAWSKADPGVIFFDVINRRNV 900 Query: 573 QQH--VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTI 625 G + ++N C E L E CNL SINL FD+D+ A I Sbjct: 901 LAEAKGGPIRATNPCGEEPLY----EYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVI 956 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 + + LDN ID+N + + + R IG+G+MG AL L IPY S E + Sbjct: 957 QKVAKYLDNAIDVNRFPLPEIDHNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFAFMRK 1016 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 + E+++F+A SVE A++RG + ++ S + G P++ LP Sbjct: 1017 ATEYLTFYAYKYSVEAAKKRGTFPLYEKSAYKDGELPVE----------GFYHREIWTLP 1066 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 WDEL + +K G+RN PT +++ I S I+P + +Y KS G+F V+ Sbjct: 1067 WDELVEEIKRHGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPV 1126 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 +ELK+R LW + ++ + + GS+ +E IP+D++++ T+ ++ + I + + Q Sbjct: 1127 FESELKKRGLWSDEILRKISDNYGSVQGLEEIPEDMQRVFVTSMDVHWLDHILAQANIQL 1186 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVD 920 W+ + S + + ++ + + + Y A+ +G K R S + SVE K V Sbjct: 1187 WLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRKRVP 1246 Query: 921 GKLNAVPVTDPNSSTHSLG 939 K ++ V + + Sbjct: 1247 AKPSSYAVEKLKAVVEAEP 1265 Score = 184 bits (466), Expect = 8e-44, Method: Composition-based stats. Identities = 75/377 (19%), Positives = 134/377 (35%), Gaps = 85/377 (22%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V D + N + V R + Sbjct: 5 KVMKRDGRIVPFDRERIKWAIKRAMLEVGVH--------DDKLLNRVVRRVVRRINELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 + HIE+IQD VE LM++G ++ + Y+LYR++++++R + + Sbjct: 57 GQVPHIENIQDIVELELMRAGLFEVAKAYILYRKKKAEIREEKKKILNKDK--------- 107 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 L ++ + L + +SR L Sbjct: 108 -----------------------LDEIDKRF----------------SLNALRVLASRYL 128 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 I E + R L E++ L + ++ + + + R Sbjct: 129 IRNEKGEIVESPRELFERVA--TLAVIPDLLYDERVYDKEGKHEQDLSRVKHYLEHFEEF 186 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325 +G L +F + E+ + M+V+ Sbjct: 187 DGKY---------------------SIGRFKLNKYHFERLVKLYRELAEKGKMKVSIDEF 225 Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 M + E E++ L++S FM +TP L NSG LS+CF+ + DD+ I Sbjct: 226 LGMLENGAFDDYESEIEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESI 285 Query: 384 FGALQENAMLAKYSGGL 400 A + AM+ K GG Sbjct: 286 MKAAHDVAMIQKSGGGC 302 >gi|240169273|ref|ZP_04747932.1| ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium kansasii ATCC 12478] Length = 696 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 164/661 (24%), Positives = 267/661 (40%), Gaps = 80/661 (12%) Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHI-NGSRIEMPQA 319 + V + +L L RD + +L +RY L G E Sbjct: 82 DDVARAYIIYRQRRAEL-RAGKALLGVRDELKLSLAAVMVLRERYLLRDARGRPTESTGE 140 Query: 320 FFMRVAMGLALKETEKE-----KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT 374 R A +A E E + A F LL + F+ ++PTL N+GT L+ CF+ Sbjct: 141 MMDRTARCVAAAEDEYRTGSSAQWAERFATLLRNLEFLPNSPTLMNAGTDLGLLAGCFVL 200 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D L IF L + A + + GG G ++ VR G + T G + G + FL++ + Sbjct: 201 PVEDSLRSIFATLGQAAEVQRAGGGTGYTFSRVRPAGDRVASTGGTASGPMSFLRLYDTA 260 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 A V+ GG+R+GA A L+ H D+ +F+ K +++ + D F++ V Sbjct: 261 ADVVSMGGRRRGACMAVLDASHPDICDFIS-AKAESTSHLTHFNLSVG--VGDAFLRAVE 317 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + L +P K ++ A L+ + Sbjct: 318 RGGAHRLVNPRT---------------------------GKTVARMPAAELFDAICQAAH 350 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 G P + F D N +P G + ++N C E+ L CNLGSINL N Sbjct: 351 ACGDPGLVFLDTINRANPVPARGRIEATNPCGEVPLLPY----ESCNLGSINLARMITNG 406 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D+D+L + AVR LD+VID++ + + ++ R IGLG+MG L L IPY Sbjct: 407 HLDWDRLGAVTEVAVRFLDDVIDVSRYPFPELAEATRASRKIGLGIMGLAELLASLGIPY 466 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S E V +A + M I HA AS LA++RG++ +F S Sbjct: 467 DSVEGVRLAGQVMRRIQRHAHLASRRLAEDRGSFPAFADSR------------------- 507 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 V+ RN+ ++APT TI+ I G + I+P + + ++ Sbjct: 508 -----------------LVRFGPRRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAI 550 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + VN + + + + +++++ G + R+P +L+ TA EI P Sbjct: 551 VGRQLLEVNPCFDRLARDQGFYRDELVAEIAQRGG-VRGYPRLPAELRAAFPTAAEIAPQ 609 Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 W + + Q+ +D A S + L + + +Y AW +K R S Sbjct: 610 WHLRMQAAVQRHVDAAVSKTVNLPAAATVDDVRAVYLSAWRAKVKGITVYRYGSREGQVL 669 Query: 914 S 914 S Sbjct: 670 S 670 Score = 72.2 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 12/116 (10%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 QV +R+ + FD I + AV + D+ + L Sbjct: 12 QVRRRDATLVPFD-------IARIEAAVARAAREVAYDDPDMPATVARAVADTLGPR--- 61 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 I +E + D VE L ++G + R Y++YR+ R+++RA ++ + L Sbjct: 62 --IASVERVGDFVEARLGEAGLDDVARAYIIYRQRRAELRAGKALLGVRDELKLSL 115 >gi|311992968|ref|YP_004009835.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj61] gi|295815257|gb|ADG36183.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj61] Length = 750 Score = 360 bits (923), Expect = 8e-97, Method: Composition-based stats. Identities = 183/787 (23%), Positives = 313/787 (39%), Gaps = 81/787 (10%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQ---DVSSKIVLSETYKNMYDGLSESDLETA 201 +K++ G F+ ++ ++ A G++ D+ + ++ D ++ S+++ A Sbjct: 1 MKVIKSSGIAQEFDQNKIMQVLNWALEGIEFTSDIDVYDLFDRIIPHLKDEMTTSEIQDA 60 Query: 202 LIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 ++ + I +E +Y V + LR+ V + ++ Sbjct: 61 IVKVAADSITLEEQDYQYVASNLAQFGLRKAVFGQFDPPK-----------FIDHVTSVT 109 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQ 318 G+ + + L + + RDF F Y G L D+Y + G E PQ Sbjct: 110 AHGLYDSEILLKYSPAEFEELEEAIDHSRDFTFTYAGTCQLMDKYLVKDRSTGKIYETPQ 169 Query: 319 AFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 FM + M L E + + + EFY +S+ TP + T Q SSC + Sbjct: 170 FAFMLIGMCLHQDEDKSTRLQAVKEFYEAVSTRKISLPTPIMAGVRTPTRQFSSCVVIES 229 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I A G+G + +R G+ I K GV+PF K N Sbjct: 230 GDSLDSINDANSAIVKYVSKRAGIGINAGMIRAEGSKIGPGEVKHTGVVPFWKHFNSAVH 289 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +QGG RKG+ + WH++VE + L+ N G + R M+ I +L ++R N Sbjct: 290 CCSQGGIRKGSATMFFPMWHLEVENLIVLKNNKGVEENRIRHMDYGLQINELLIERYINN 349 Query: 497 AGWTLFSPD---EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML-TM 552 TLFSPD E+ D + + F YE+ E+Q + +++ A LW +M T Sbjct: 350 DYITLFSPDAHPELYDSYFSNPERFREIYEDLEKQPLVRK----KRMKARTLWEEMFATE 405 Query: 553 LFETGHPWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSS--EETAVCNLGSINLLA 609 T + +F D N + + V SNLC EI L++ E L +++ Sbjct: 406 RANTARIYPSFVDNINEYGPWIREIAPVRQSNLCMEIALHTKDIGREDGEIALCTLSAFV 465 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + + + D++ VR LDN++D + EKA S +R++G+G+ + + L Sbjct: 466 LDSFDWKNQDEINRIAMVMVRSLDNLLDYQDYPHEKAL-SAKEYRSLGVGVTNYAAWLAS 524 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 Y +A EI E E + + I AS++LA+E+G + + QG PID Sbjct: 525 NSASY--NDANEITHELFERLQYALIKASIQLAKEKGPSPRLYMTKYGQGKLPIDWYRPS 582 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + + L W+ L++ + GMRN+ A+ P + + + + ++P + Sbjct: 583 VDE----LVEPVYVLDWEALREDLILYGMRNTTLSAMMPCESSSQVSNSTNGLEPPRGPV 638 Query: 790 YVKSNMSGDFTVVNS-FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 VKS+ G F V + N+L + A Sbjct: 639 SVKSSKGGAFNQVVPNYAENQL---------------------------------FYDFA 665 Query: 849 FEID---PMWLIESASRRQKWIDQAQSLNLYL-------DEPSGKKLDFIYRQAWLMGLK 898 +E+ + S QKW DQA SLN Y + ++ A G K Sbjct: 666 WELAKTGNKGYLTQCSIIQKWNDQAISLNTYYLPSRYENGKVPMSEIIDDILFANFYGNK 725 Query: 899 TTYYLRS 905 YY + Sbjct: 726 NMYYHNT 732 >gi|121534255|ref|ZP_01666079.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosinus carboxydivorans Nor1] gi|121307025|gb|EAX47943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosinus carboxydivorans Nor1] Length = 566 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 175/626 (27%), Positives = 276/626 (44%), Gaps = 85/626 (13%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE----TEKEKRAVEFYNLLSS 348 + +L RY E P+ F RVA +A E +++ E+Y +++ Sbjct: 2 LSGEAMAVLKARYLREG-----ETPEKMFWRVAEYVAEAEALYGGDRQAACQEYYAIMAG 56 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F+ ++P L N+G + Q+++CF+ V D L IF L+ A++ + GG G ++ +R Sbjct: 57 LEFLPNSPALMNAGRKQAQMAACFVLPVDDSLGDIFDTLKHAALIHQSGGGTGFSFSRLR 116 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I GTNGK+ G + FL V + V QG R+GA A L H D+EEF+ ++ Sbjct: 117 PKGDRIAGTNGKASGPVSFLHVYDAATEVVRQGAVRRGANMAVLRVDHPDIEEFITAKR- 175 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 DR ++ N + I D FM V Q+ + L P Sbjct: 176 ---DRTVLNNFNLSVGITDAFMVAVAQDRSFALVHPRT---------------------- 210 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + R++SA L+ M M +E G P + F D N +P H+G + N C+E Sbjct: 211 -----GRTVRQVSARRLFDLMAAMAWENGEPGLFFLDTVNRANPTPHLGNFEAPNPCSEQ 265 Query: 589 TLNSSSEETAVCNLGSINLLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 L C LGS+NL DYD+L+ +R AVR LDN+ID N + + Sbjct: 266 PLLPY----ESCVLGSVNLAKMVAADGQHLDYDRLSVVVRRAVRFLDNIIDRNWYPLPAV 321 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ R IGLG+MG +L IPY S +AV + + M FI+ A S LA ERG Sbjct: 322 AEATLRTRKIGLGIMGLADLFIMLDIPYGSKQAVLLTADIMRFITAEARRESARLAAERG 381 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + ++ GS+++ + P +RN+ I Sbjct: 382 PFPAYPGSIYESSIGP-----------------------------------VRNATVTTI 406 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLK 825 APT TI+ I S I+P + + + + G +N ++ L +R L + +K Sbjct: 407 APTGTISIIANCSSGIEPLFALAFSRHVLGGQVLASINPTVLAYLDKRGLLTTDVEKTIK 466 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884 H GS+ N +P +K++ ATA EI P+W + + Q++ D A S + L + Sbjct: 467 -HQGSVRN-TGLPYHVKQVLATAHEIRPIWHVAQLAAAQRYTDNAVSKTVNLPHKAMPHD 524 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATS 910 + I+ A+ G K R S Sbjct: 525 VARIFSLAYRSGCKGVTVYRDGSRDQ 550 >gi|153801926|ref|ZP_01956512.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-3] gi|124122571|gb|EAY41314.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio cholerae MZO-3] Length = 670 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 165/686 (24%), Positives = 268/686 (39%), Gaps = 59/686 (8%) Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGS 312 + + +E+G + L E +L + + + RD F Y ++ L +YF + G Sbjct: 14 HVTKMVEKGKYDKHLLEDYTREELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQ 73 Query: 313 RIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSS 370 E Q ++ VA L + + FY+ S+F TP + T Q SS Sbjct: 74 IYESAQFLYILVAACLFAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSS 133 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C L D L I G+G + +R LG+ I G G IPF K Sbjct: 134 CVLIECGDSLDSINATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKY 193 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 +QGG R GA + WH + E L L+ N G + R M+ + L Sbjct: 194 FQTAVKCCSQGGVRGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMY 253 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 KR+ + TLFSP +V L+D + EFE Y YE + + A+ ++ Sbjct: 254 KRLVEGGNITLFSPSDVPGLYDAFFQDQDEFERLYVKYE----NDPSIKKKTVKALEIFT 309 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ TG +I D CN SP V SNLC EI L +S G I Sbjct: 310 LLMQERASTGRIYIQNVDHCNTHSPFDAAVAPVRQSNLCLEIALPTSPLANVEDESGEIA 369 Query: 607 LLA---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 L D VR LD ++D + + A++S+ R +G+G++ + Sbjct: 370 LCTLSAFNLGAIESLDDFEELSDLVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 429 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L + Y+ A + + E + +H + AS++LA+E+G F + + +G+ PI Sbjct: 430 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 489 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 D+ + L WD+L+ + G+RNS A+ P+ T + I + I+ Sbjct: 490 DTYKKDID----LVCAEPLHYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIE 545 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + VK++ G V + + ++ ++ +DG + Sbjct: 546 PPRGYVSVKASKDGILKQVVPEFTRLKE-----NYELLWNIGSNDGYLH----------- 589 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMG 896 QK++DQA S N D + KKL A+ G Sbjct: 590 ---------------LVGIMQKFVDQAISANTNYDPSNFDSGKVPMKKLLQDLLTAYKFG 634 Query: 897 LKTTYY--LRSRSATSVEKSTLKGVD 920 +KT YY R + +T+K + Sbjct: 635 VKTLYYHNTRDGAKDEQTDATVKVQE 660 >gi|225734495|gb|ACO25263.1| ribonucleoside-diphosphate reductase [Epizootic haematopoietic necrosis virus] Length = 565 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 163/620 (26%), Positives = 247/620 (39%), Gaps = 105/620 (16%) Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F S+P L S T SCFL VPD + G+ E L+ GG Sbjct: 45 EKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + W + G + KS G IPFL + A QG R+G+ AY+ H D+ Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EF+ +R TGD R+ +++ I D FM+ V + W L P Sbjct: 157 IEFITMRTPTGDVNRKNLNLHHGVNITDAFMRCVERGENWDLVDPKS------------- 203 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576 V +SA LW ++L F TG P++ F D N ++ Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKG 249 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK-LASTIRTAVRVLDNV 635 + SNLC EI L ++++ TAVC L S+NL + + D + L + ++ + Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERYNEWRETDLVECLVEMLDNVIQTFVDE 309 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + +A +S R+IGLG MG+ L IP+ S EAV + I A+ Sbjct: 310 APLKTPHTARAVRSAAGERSIGLGAMGWARYLQKRRIPFDSEEAVRLTGIIFGGIKSAAV 369 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 A+ LA+ERG G Sbjct: 370 RATRALAKERGEAPDLTG------------------------------------------ 387 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G+RN++ +A+AP A A + G S S++P YV G VN +L +L+ L Sbjct: 388 YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLESLGL 447 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 E + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q QSLNL Sbjct: 448 DTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQSLNL 507 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + L ++R AW G K YYLR+ + Sbjct: 508 FFPMGADKTDLSDVHRLAWKSGCKGLYYLRT-----------------------CAGRTG 544 Query: 935 THSLGIPSSCTSDTECEVCQ 954 S + EC CQ Sbjct: 545 HKIFEAKKSPENTEECTACQ 564 >gi|283852533|ref|ZP_06369801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. FW1012B] gi|283572141|gb|EFC20133.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio sp. FW1012B] Length = 743 Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 173/642 (26%), Positives = 285/642 (44%), Gaps = 83/642 (12%) Query: 301 LYDRYFLH-INGSRIEMPQAFFMRVAMG-------LALKETEKEKRAVEFYNLLSSFHFM 352 L RY + +GS +E + F RVA E A FY+L+ F+ Sbjct: 23 LAKRYLMKGPDGSPLEDVRGLFWRVAAAIAAEEAKYGNSPFAPEDLARRFYDLMVGMRFL 82 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++PTL N+GT QL++CF+ V D + IF A++ A++ K GG G ++ +R A Sbjct: 83 PNSPTLMNAGTPLGQLAACFVLPVGDSMEEIFDAVKFAALIHKSGGGTGFSFSRLRPKKA 142 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + T G + G + F+++ N V QGG R+GA L H D+ EF+ ++ + Sbjct: 143 RVGSTGGVASGPVSFMRIFNTATEQVKQGGTRRGANMGILRVDHPDILEFITCKERENE- 201 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + N + + + FM+ V + + L P + Sbjct: 202 ---LQNFNISVALTERFMQAVEKGEDYDLIDPRD-------------------------- 232 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 V + SA ++ ++ +E+G P I F D N +P +G + S+N C E L Sbjct: 233 -KAVVGRQSAADVFSLLVRKAWESGDPGIVFIDRINRDNPTPALGEIESTNPCGEQPLLP 291 Query: 593 SSEETAVCNLGSINLLAHFAN---NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 CNLGS+NL + D+ L T+ AVR LDNVID + + +++ Sbjct: 292 Y----EACNLGSVNLAVFHDPAAPDGIDWAGLTETVHLAVRFLDNVIDASRYPLDQITDM 347 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 +R IGLGLMGF L+LLHIPY S EA+++A+ M+ I + SAS LA ERG + Sbjct: 348 VQANRKIGLGLMGFADLLYLLHIPYDSTEALKLAERIMDTIQGESKSASKALAAERGPFP 407 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 ++ S++ + + RN+ IAPT Sbjct: 408 AYPDSIF-----------------GKRNLGPY-----------------RNATTTTIAPT 433 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T++ I G S I+P + + + M G+ N VN +K+ + ++++ ++ Sbjct: 434 GTLSIIAGCSSGIEPLFALAFSRHVMDGEKLVEANVHFVNAMKEAGAYSDSLMEEVTR-K 492 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDF 887 GSI +I +PD L+++ TA +I+P+W ++ + QK+ D A S + L ++ + + Sbjct: 493 GSIAHIGMLPDALREVFVTAMDIEPVWHLKMQAAFQKYTDNAVSKTVNLPNDATQDDIRE 552 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 IYR A+ +G K R T G Sbjct: 553 IYRLAYELGCKGVTVYRDGCKAGQVLCTGDGATPAPAKTQSK 594 >gi|222834322|gb|EEE72799.1| predicted protein [Populus trichocarpa] Length = 403 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 273/403 (67%), Positives = 332/403 (82%), Gaps = 1/403 (0%) Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ +++ENA+L+K++GGLGNDWT VR LG+ I GTNG+SQGV+PFLKV NDTAVAVNQGG Sbjct: 1 IYESIKENALLSKFAGGLGNDWTRVRALGSRIKGTNGESQGVVPFLKVVNDTAVAVNQGG 60 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KRKGAVC YLETWH+D+EEFL+LRKNTGDDRRRTHDMNTANWIPDLFMKRV + WTLF Sbjct: 61 KRKGAVCTYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEKGHWTLF 120 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 SP +V DLHDL+G FE AY+ YE +AD GE+K+F++I A+ LWRKML+MLFETGHPW+T Sbjct: 121 SPSDVGDLHDLFGAAFEQAYKAYETKADNGELKLFKRIPAMDLWRKMLSMLFETGHPWVT 180 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 FKDPCN+RSPQQH GVVHSSNLCTEITLN+S ETAVCNLGS+NL H + D+ KL Sbjct: 181 FKDPCNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHIVDGAIDHGKLR 240 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI TA+R+LDNVIDIN + ++KAK SN HR +GLGLMGFQ AL+ + I YAS AVE Sbjct: 241 KTITTAMRMLDNVIDINYYAVQKAKDSNLRHRPVGLGLMGFQDALYEMRIAYASDAAVEF 300 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR-DELAMNRT 741 AD+SME I ++A AS ELA+ERG YSS+KGSLWDQG+ P+D++ LL + R + ++R+ Sbjct: 301 ADQSMEAICYYAYWASTELAKERGQYSSYKGSLWDQGILPLDTLNLLEKARGGYVEVDRS 360 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 SRL WD L+ ++ GMRNSNC+AIAPTATI+NI GV SI+P Sbjct: 361 SRLDWDALRAKIGQHGMRNSNCVAIAPTATISNIVGVDASIEP 403 >gi|308273142|emb|CBX29745.1| hypothetical protein N47_F14400 [uncultured Desulfobacterium sp.] Length = 734 Score = 358 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 174/648 (26%), Positives = 277/648 (42%), Gaps = 75/648 (11%) Query: 294 EYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEK------EKRAVEFYNLL 346 L +L RY G IE P+ F+RVA +A ++ EK +F LL Sbjct: 14 SNNALIVLEKRYLKKDKEGKAIETPEDMFLRVAKHIASADSLFAGPFDIEKTEKKFLKLL 73 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 ++ F+ ++PTL N+G R QL++CF+ + D + IF L+ AM+ K GG G ++ Sbjct: 74 TNLWFLPNSPTLMNAGRRLGQLAACFVLPLEDSMDSIFETLKHTAMIHKSGGGTGFSFSR 133 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R + T G S G I F+ V + V QGG R+GA L H D+E F++L+ Sbjct: 134 IRPEKDIVLSTAGVSSGPISFMTVFDVATETVKQGGTRRGANMGILRVDHPDIESFIELK 193 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 +D + ++ N + + D FM ++ + Sbjct: 194 ----NDTGKLNNFNISVALTDSFMDALSNESDKDSEYDLINPRTEQ-------------- 235 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + R++SA ++ ++ + G P I F D N +P +G + ++N C Sbjct: 236 ---------ITRRVSARKIFDAIVHSAWLNGEPGIIFIDRINRDNPVPELGNIEATNPCG 286 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 E L C LGSINL A + +Y +L TI +V LDNV++IN + + + Sbjct: 287 EQPLLPY----ESCTLGSINLSAMVSGKAVNYKRLKKTIHDSVHFLDNVVEINKYPLARI 342 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 +K + R IGLG+MGF L L I Y S EAV A++ M FIS + AS LA++RG Sbjct: 343 EKMSKGTRKIGLGVMGFADMLIKLGISYDSEEAVTQAEKIMSFISEESKIASAALAKKRG 402 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 ++ +KGS++D P MRN+ I Sbjct: 403 NFAFYKGSIYDSPDTPY----------------------------------MRNATTTTI 428 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFT-VVNSFLVNELKQRDLWDEAMISDLK 825 APT TI+ I G S I+P + + + + G +N + K + + ++ ++ Sbjct: 429 APTGTISIIAGTSSGIEPIFGIVQTRRVLDGKTLSDINPLFIGIAKSEGFYSKNLLDEI- 487 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 + SI I+ IPD +K + TA +I P I + Q++ D A S + + Sbjct: 488 TNGTSIQQIDAIPDQIKDLFKTAHDILPEQHINIQAAFQRFTDNAVSKTVNFGPDALRSD 547 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPN 932 + +Y A G K R S S + P P Sbjct: 548 IAKVYMLAHTKGCKGVTIYRYGSRDHQVLSIGAEKKDSVKIAPRPRPE 595 >gi|56692701|ref|YP_164159.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore grouper iridovirus] gi|42517413|gb|AAS18079.1| ribonucleoside-diphosphate reductase alpha subunit [Singapore grouper iridovirus] Length = 572 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 161/625 (25%), Positives = 260/625 (41%), Gaps = 112/625 (17%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + Y+ + F S+P L + SCFL VPD ++G+ E L+ GG+ Sbjct: 48 KLYSYSCAGWFGYSSPVLNSGA--GGLPISCFLMYVPDSIHGLISHTAELRWLSVLGGGV 105 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 W + G + KS G IPF+ + A QG R+G+ AY+ H D+ Sbjct: 106 AGHWDA-------VRGPSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPDII 158 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL +R TGD R+ +++ + D FM V ++ W L P+ Sbjct: 159 EFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNT-------------- 204 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG 577 K + + A LW ++L F TG P++ F D N + Sbjct: 205 -------------SKTVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTKGL 251 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + SNLC EI L + + TAVC L S+NL +D K + VR+LDNV++ Sbjct: 252 KIRGSNLCNEIHLPTDKDRTAVCCLSSVNLE------MYDEWKDTDLVECVVRMLDNVME 305 Query: 638 INCH-------TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 A R++G+G MG+ L IP+ A + DE I Sbjct: 306 DFISRAPTLSAHTANAVAGASGERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIFGAI 365 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+SAS +LA E+G G Sbjct: 366 KAAALSASKKLAAEKGEPPDLVG------------------------------------- 388 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G+RN++ +A+AP A A + G S S++P N YV +G + N +L +L Sbjct: 389 -----YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLERDL 443 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 ++ ++ + + + + GS+ ++ P+ L++++ TAFEID M ++ A+ RQ+ + Q Sbjct: 444 RELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHLCQG 503 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QS+NL+ KL ++R AW + K YYLR+++ T + V + + + Sbjct: 504 QSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKA-----NRTSRKVFTEFFSSAAS 558 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 N+ + EC CQ Sbjct: 559 TSNNKS------------EECVACQ 571 >gi|20808702|ref|NP_623873.1| ribonucleotide reductase alpha subunit [Thermoanaerobacter tengcongensis MB4] gi|20517341|gb|AAM25477.1| Ribonucleotide reductase alpha subunit [Thermoanaerobacter tengcongensis MB4] Length = 691 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 169/632 (26%), Positives = 279/632 (44%), Gaps = 81/632 (12%) Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV-- 376 F RVA +A E E+E FY ++S + F+ L +GT +CF+ V Sbjct: 1 MFKRVAKAIATNEKEEEM----FYKVMSEWKFIPGGRILAGAGTGREVTYFNCFVIPVEA 56 Query: 377 ------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 D I + + + GG+G +W+ +R GA++ G G S G + ++ Sbjct: 57 NDPKKGNDSRAAIMDTIAKMLEINSRGGGVGINWSTLRPRGAYVKGVGGTSSGAVSWMLA 116 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 AN+ A V QGG R+ A+ L WH D+EEF+ ++K D + N + + D FM Sbjct: 117 ANEVATQVEQGGSRRAALMFMLWDWHPDIEEFIKVKK----DLTKMQQANLSVAVSDAFM 172 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + V Q+ W L PD +D E + E +A V+++I A LW K++ Sbjct: 173 EAVAQDKMWKLEFPDTSHPNYDA-----EWKGDLNEWKAKGYPTVVYKEIPARELWNKIV 227 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 T +E+ P + F + N S ++ + S+N C E+ L VCNLG+INL+A Sbjct: 228 TAAWESAEPGVVFLERYNKLSNTYYITKIISTNPCGELGLEPY----GVCNLGAINLVAF 283 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + ++++L T++ AVR LDNV+D+ + + + K+ R +GLGLMG AL L+ Sbjct: 284 VENGKINFEELEETVKIAVRFLDNVLDLGAYVLPQNKEMAQKLRRVGLGLMGLADALILM 343 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 ++ Y S E+++ +E + I A ASVELA+E+G + F + +G I L Sbjct: 344 NLRYGSEESLKATEEIVRRIRDAAYRASVELAKEKGPFPEFVADKYLKGQ----FIQRLP 399 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + ++ + G+RN+ + APT T + + GVS I+P++ Y Sbjct: 400 KD----------------IRDEIAKYGIRNATILTQAPTGTTSILAGVSSGIEPNFAKEY 443 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 V+ + +G TV + W +A E Sbjct: 444 VRKDRTGTHTVKH------------WLAD----------------------YPAFVSAHE 469 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + P ++ + QK+ID + S + L + +D IYR A+ +G K R S Sbjct: 470 VTPEEHVKMQAVLQKYIDSSISKTINLPRTATVDDIDNIYRLAYELGCKGITVYRDGSRE 529 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 V + K + T + P Sbjct: 530 GVLVTDTKPQEKTKITERPPVLKGITKRIETP 561 >gi|56418246|gb|AAV91060.1| ribonucleoside-diphosphate reductase alpha subunit [Grouper iridovirus] Length = 572 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 161/625 (25%), Positives = 261/625 (41%), Gaps = 112/625 (17%) Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + Y+ + F S+P L + SCFL VPD ++G+ E L+ GG+ Sbjct: 48 KLYSYSCAGWFGYSSPVLNSGA--GGLPISCFLMYVPDSIHGLISHTAELRWLSVLGGGV 105 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 W + G + KS G IPF+ + A QG R+G+ AY+ H D+ Sbjct: 106 AGHWDA-------VRGPSEKSCGTIPFMHTVDADMTAYWQGRVRRGSYAAYMSLSHPDIV 158 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL +R TGD R+ +++ + D FM V ++ W L P+ Sbjct: 159 EFLTMRTPTGDANRKNLNLHHGVNVTDYFMTCVEKDLTWDLIDPNT-------------- 204 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHVG 577 K+ + + A LW ++L F TG P++ F D N + Sbjct: 205 -------------SKIVQTMKARDLWERLLETRFRTGEPYLNFIDAANRCLHPALKTKGL 251 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + SNLC EI L + + TAVC L S+NL +D K + VR+LDNV++ Sbjct: 252 KIRGSNLCNEIHLPTDKDRTAVCCLSSVNLE------MYDEWKDTDLVECVVRMLDNVME 305 Query: 638 INCH-------TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 A R++G+G MG+ L IP+ A + DE I Sbjct: 306 DFISRAPTLSAHTANAVAGASGERSLGVGAMGWARYLQKHRIPFDGEIAYNLTDEIFGAI 365 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A+SAS +LA E+G G Sbjct: 366 KAAALSASKKLAAEKGEPPDLVG------------------------------------- 388 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G+RN++ +A+AP A A + G S S++P N YV +G + N +L +L Sbjct: 389 -----YGVRNAHLLAVAPNANSALLLGTSASVEPEIGNAYVHRTRAGSHQIKNPYLERDL 443 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 ++ ++ + + + + GS+ ++ P+ L++++ TAFEID M ++ A+ RQ+ + Q Sbjct: 444 RELNMDTDKVWESIVANGGSVQHLMDFPEKLRRVYRTAFEIDQMEIVRQAAVRQRHLCQG 503 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 QS+NL+ KL ++R AW + K YYLR+++ T + V + + + Sbjct: 504 QSVNLFFPIGTDKTKLSNVHRTAWRLNCKGLYYLRTKA-----NRTSRKVFTEFFSSTAS 558 Query: 930 DPNSSTHSLGIPSSCTSDTECEVCQ 954 N+ + EC CQ Sbjct: 559 TSNNKS------------EECVACQ 571 >gi|228861250|ref|YP_002854273.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled turtle iridovirus] gi|194307530|gb|ACF42260.1| ribonucleoside diphosphate reductase alpha subunit [Soft-shelled turtle iridovirus] Length = 565 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 171/626 (27%), Positives = 250/626 (39%), Gaps = 117/626 (18%) Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F S+P L S T SCFL VPD + G+ E L+ GG Sbjct: 45 EKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + W + G + KS G IPFL + A QG R+G+ AY+ H D+ Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EF+ +R TGD R+ +++ I D FM+ V + W L P Sbjct: 157 IEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKS------------- 203 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576 V +SA LW ++L F TG P++ F D N ++ Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKG 249 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SNLC EI L ++++ TAVC L S+NL + D + + V +LDNVI Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVEMLDNVI 303 Query: 637 DINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +A +S R+IGLG MG+ L IP+ S EAV + Sbjct: 304 QTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRG 363 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A+ A+ LA+ERG G Sbjct: 364 IKSAAVRATRALAKERGEAPDLTG------------------------------------ 387 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 G+RN++ +A+AP A A + G S S++P YV +G VN +L + Sbjct: 388 ------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRAGSHQAVNPYLKRD 441 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+ L E + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q Sbjct: 442 LESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQ 501 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLNL+ L ++R AW G K YYLR T G G Sbjct: 502 GQSLNLFFPIGADKTNLSDVHRLAWKSGCKGLYYLR----------TCAGRTGHKIFEAK 551 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 P + EC CQ Sbjct: 552 KSPEKT-------------EECTACQ 564 >gi|18656499|gb|AAL77800.1|AF389451_7 ribonucleoside-diphosphate reductase alpha chain [Tiger frog virus] Length = 565 Score = 357 bits (915), Expect = 7e-96, Method: Composition-based stats. Identities = 171/626 (27%), Positives = 249/626 (39%), Gaps = 117/626 (18%) Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F S+P L S T SCFL VPD + G+ E L+ GG Sbjct: 45 KKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + W + G + KS G IPFL + A QG R+G+ AY+ H D+ Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EF+ +R TGD R+ +++ I D FM+ V + W L P Sbjct: 157 IEFITMRTPTGDVNRKNLNIHHGVNITDAFMRCVERGENWDLVDPKS------------- 203 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576 V +SA LW ++L F TG P++ F D N ++ Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHPALKRKG 249 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SNLC EI L ++++ TAVC L S+NL + D + + V +LDNVI Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVEMLDNVI 303 Query: 637 DINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +A +S R+IGLG MG+ L IP+ S EAV + Sbjct: 304 QTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKCRIPFDSEEAVRLTGIIFGG 363 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A+ A+ LA+ERG G Sbjct: 364 IKSAAVRATRALAKERGEAPDLTG------------------------------------ 387 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 G+RN++ +A+AP A A + G S S++P YV G VN +L + Sbjct: 388 ------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRD 441 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+ L E + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q Sbjct: 442 LESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQ 501 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLNL+ L ++R AW G K YYLR T G G Sbjct: 502 GQSLNLFFPMGADKTNLSDVHRLAWKSGCKGLYYLR----------TCAGRTGHKIFEAR 551 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 P + EC CQ Sbjct: 552 KSPEKT-------------EECTACQ 564 >gi|49237335|ref|YP_031616.1| ribonucleoside diphosphate reductase alpha subunit barrel domain [Frog virus 3] gi|47060153|gb|AAT09697.1| ribonucleoside diphosphate reductase alpha subunit barrel domain [Frog virus 3] Length = 565 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 170/626 (27%), Positives = 251/626 (40%), Gaps = 117/626 (18%) Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 + + F S+P L S T SCFL VPD + G+ E L+ GG Sbjct: 45 EKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWLSVMGGG 103 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + W + G + KS G IPFL + A QG R+G+ AY+ H D+ Sbjct: 104 VAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMSISHPDL 156 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EF+ +R TGD R+ +++ I D FM+ V + W L P Sbjct: 157 IEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVDPKS------------- 203 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP---QQHV 576 V +SA LW ++L F TG P++ F D N ++ Sbjct: 204 --------------GAVAHTVSARELWERILETRFRTGEPYLNFIDTANRGLHPALKRKG 249 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + SNLC EI L ++++ TAVC L S+NL + D + + V +LDNVI Sbjct: 250 LKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVEMLDNVI 303 Query: 637 DINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +A +S R+IGLG MG+ L IP+ S EAV + Sbjct: 304 QTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLTGIIFRG 363 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I A+ A+ LA+ERG G Sbjct: 364 IKSAAVRATRALAKERGEAPDLTG------------------------------------ 387 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 G+RN++ +A+AP A A + G S S++P YV G VN +L + Sbjct: 388 ------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRD 441 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+ L E + + + GS+ +I +PD LKK++ T+FE+D ++ A+ RQ+ + Q Sbjct: 442 LESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQ 501 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 QSLNL+ L ++R AW G K YYLR+ + + K + K N Sbjct: 502 GQSLNLFFPIGADKTNLSDVHRLAWKSGCKGLYYLRTCAGRTGHK----IFEAKKNPEKT 557 Query: 929 TDPNSSTHSLGIPSSCTSDTECEVCQ 954 EC CQ Sbjct: 558 -------------------EECTACQ 564 >gi|307353248|ref|YP_003894299.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase [Methanoplanus petrolearius DSM 11571] gi|307156481|gb|ADN35861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoplanus petrolearius DSM 11571] Length = 722 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 172/656 (26%), Positives = 272/656 (41%), Gaps = 95/656 (14%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 L RY + RVA LA E ++E FY ++S F+ ++PTL N Sbjct: 11 LSARYLRKGEK----TFEDICHRVASALASDEKDREL----FYEAMTSLRFLPNSPTLMN 62 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT QLS+CF VPD + GIF A+++ A++ K GG G +++ +R G+ + T+G Sbjct: 63 AGTEIGQLSACFTLPVPDSIPGIFDAMKQGAVIHKTGGGTGYNFSHIRAEGSPVRSTDGV 122 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + F+K N + QGG+R+GA L WH D+ F+ +K + + N Sbjct: 123 ASGPVSFMKAFNAATDVIKQGGRRRGANMGILNVWHPDILSFITSKK----EEGSISNFN 178 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540 + + D FM V E + + G K+ Sbjct: 179 ISVMVNDEFMTLVRDR-----------------------KFDEIWIKHPVTGV-----KV 210 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600 + +W ++ +++ G P + F D N +P +G + +N C E L C Sbjct: 211 TVGEIWNGIVDGIWKNGEPGVLFYDEINRHNPTPGLGDIDITNPCGEQPLLPF----ESC 266 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 LGSINL A +FD + L T+R AVR L+NVID N + I + +++ R IGLG+ Sbjct: 267 VLGSINLAACINEGKFDEELLDDTVRMAVRFLNNVIDANVYPIPEIEEATKKTRKIGLGV 326 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 MG AL +L IPY SP + E M I+ A+ S LA++ G + ++ S W Sbjct: 327 MGVHDALLMLKIPYDSPGGRKWCGEIMHRITETAVEESQLLAEKLGTFPEWEKSTW---- 382 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 K +RN+ +APT TI+ + G S Sbjct: 383 ---------------------------------KERKVRNAAMTTVAPTGTISLLAGCSS 409 Query: 781 SIDPSYQNLYVKSNMSGD-FTVVNSFLVNE----LKQRDLWDEAMISD------LKYHDG 829 I+P + Y + N G F +V+ L ++ + + + G Sbjct: 410 GIEPVFSFAYTRMNTVGKTFFIVSPVFKEALHSTLSEKGHSGDELKKREEEVIAHVHDTG 469 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 SI ++E +P D + + TA +I IE + QK++ + S + + K + Sbjct: 470 SIQDLEWLPADFRSLFKTALDISYRDHIEMQAVFQKYVHASISKTINMPNSAERKDCEEA 529 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 AW +GLK R+ S SV S G K G C Sbjct: 530 LLAAWTLGLKGITIYRTGSRDSVVLS--LGNSEKTAPAQGQGIERPKELAGRTYMC 583 >gi|317154786|ref|YP_004122834.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio aespoeensis Aspo-2] gi|316945037|gb|ADU64088.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfovibrio aespoeensis Aspo-2] Length = 748 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 177/664 (26%), Positives = 301/664 (45%), Gaps = 86/664 (12%) Query: 290 DFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE-------TEKEKRAVE 341 D +L RY G E + F RVA +A +E + A + Sbjct: 12 DPIINENAKIVLARRYQKKDAEGIVYETVKELFWRVASAIAAEEAKYDGSSCKPATLARD 71 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FY+L++S+ F+ ++PTL N+GT QL++CF+ V D + IF A++ AM+ K GG G Sbjct: 72 FYDLMTSYSFLPNSPTLMNAGTGLGQLAACFVLPVADSIEDIFDAVKHAAMIHKSGGGTG 131 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 ++ +R + + T G + G + FL++ N + QGG R+GA L H D+ E Sbjct: 132 FSFSRLRAKDSVVGSTGGVASGPLSFLRIFNCATEQIKQGGTRRGANMGILRVDHPDIME 191 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ ++ G+ + N + + + FM+ V +N + L +P+ Sbjct: 192 FIKAKERDGELN----NFNLSIGLTEAFMRAVEKNEEFDLMAPNS--------------- 232 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 +V K++A ++ ++ +E+G P I F D N +P +G + S Sbjct: 233 ------------GQVVEKLNAREVFNLLVQKAWESGDPGIVFLDRINRDNPTPALGEIES 280 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHF------ANNQFDYDKLASTIRTAVRVLDNV 635 +N C E L CNLGSINL + +++ ++D+L I +VR LDNV Sbjct: 281 TNPCGEQPLLPY----EACNLGSINLGKCYAKGKNGHDSEVNWDELRRIIHLSVRFLDNV 336 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 ID + + + + + +R IGLG+MG+ L L I Y S AV++A+ M+F+ A Sbjct: 337 IDASVYPLSEITEMVGKNRKIGLGVMGWADLLFQLDIAYNSQTAVDLAERVMKFMRDEAR 396 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 SAS +LA ERG + ++ S++ + + Sbjct: 397 SASKQLAAERGPFPAYAESVF-----------------GKANLGPY-------------- 425 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRD 814 RN+ IAPT T++ I G S ++P + +V++ M D N F LKQ D Sbjct: 426 ---RNATTTTIAPTGTLSIIGGCSSGVEPLFALSFVRNVMDNDKLVESNPFFETALKQAD 482 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + ++ ++ G+I +E +P DL++++ TA +I+P+W ++ + QK+ D A S Sbjct: 483 AYSPKLMEEIAKV-GTIRKMEHLPHDLRRVYVTAMDIEPIWHLKMQAAFQKYTDNAVSKT 541 Query: 875 LYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 + L + + + IY +A+ G K R S TS T G +A Sbjct: 542 VNLPGSATREDIWDIYWKAYEYGCKGVTVYRDGSKTSQVLCTGDGDKKMDDAKAGKSVVK 601 Query: 934 STHS 937 + Sbjct: 602 ARPD 605 >gi|317121176|ref|YP_004101179.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermaerobacter marianensis DSM 12885] gi|315591156|gb|ADU50452.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermaerobacter marianensis DSM 12885] Length = 881 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 151/620 (24%), Positives = 256/620 (41%), Gaps = 88/620 (14%) Query: 301 LYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTP 356 DRY +G +E P+ + RVA +A E ++E F L F F+ Sbjct: 11 FLDRYARKGPDGKPVESSPEEMWDRVARAIAEVEEPGQREVWERRFRQALEGFKFVPGGR 70 Query: 357 TLFNSGTRHP-QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 L +GT + +C++ P D GI + + GG+G + + +R G ++ Sbjct: 71 ILAGAGTGNKVTYYNCYVIPSPEDSRKGIMDNVSLMVEIMSRGGGVGVNLSTLRPRGTYV 130 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G NG + G + + +V + +V QGG R+GA+ L+ H D+EEF+ +++ D Sbjct: 131 RGVNGTASGPVSWAEVYSTATGSVIQGGSRRGALMLMLDDDHPDIEEFITVKR----DLT 186 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + + N + I D FM+ V Q+ W L Sbjct: 187 KITNANLSVCISDAFMEAVQQDLPWDLKW-----------------------------NG 217 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 KV++ + A LW + + +G P + F + N RS + ++ N C E L Sbjct: 218 KVYKTVRARDLWELICESAWASGEPGVVFMERVNKRSNTWYCEPINCVNPCGEQPLGP-- 275 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT-H 653 VCNLG+INL A + D + L T+ AVR LDNVID + + +K+ Sbjct: 276 --WGVCNLGAINLAAFVHEGELDLEGLKDTVAVAVRFLDNVIDATEYFFPENEKAQRYGV 333 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG MG L L I Y S +A E+ D+ I A S LA+E+GA+ F Sbjct: 334 RRIGLGTMGLADMLIKLRIRYGSEKAFEVCDQVYRLIRDEAYRTSALLAKEKGAFPWFDK 393 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + QG F + +++++ + G+RN + APT T + Sbjct: 394 EKYLQGWF--------------------IQRLPEDIRQLIAQHGIRNGFLLTQAPTGTTS 433 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + GVS I+P + + +++ +G V + L++ Sbjct: 434 LLAGVSSGIEPVFAFSFKRTDRTGTHIVYHELYKEWLEKHP------------------- 474 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892 + + +A ++ P + + Q+++D + S + E + ++ +YR A Sbjct: 475 ----DEPVPDYFVSADQLTPEEHVRMQAIIQQYVDASISKTVNAPREHTVDQVRTLYRLA 530 Query: 893 WLMGLKTTYYLRSRSATSVE 912 + +G K Y R S V Sbjct: 531 YELGCKGITYYRDGSREGVL 550 >gi|326204958|ref|ZP_08194810.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium papyrosolvens DSM 2782] gi|325984887|gb|EGD45731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Clostridium papyrosolvens DSM 2782] Length = 795 Score = 354 bits (908), Expect = 5e-95, Method: Composition-based stats. Identities = 165/674 (24%), Positives = 287/674 (42%), Gaps = 95/674 (14%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRA------VEFY 343 +++L RY NG+ +E F RVA +A + EFY Sbjct: 1 MKLSDNAVKVLEKRYLEKDENGNLLEDCDGMFRRVAKAIASADAAYTDEKGLAAIEQEFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++++ F+ ++PTL N+G QLS+CF+ V D + GIF +++ A++ K GG G Sbjct: 61 DMMANLEFLPNSPTLMNAGRPLGQLSACFVLPVEDTMEGIFESIKNAALIHKSGGGTGFS 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R G+ ++ T G + G I F+KV N AV QGG R+GA L H D+ EF+ Sbjct: 121 FSRLRAKGSAVNSTGGVASGPISFMKVFNAATEAVKQGGTRRGANMGILRIDHPDIMEFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + + + + N + I + FMK V N + L P Sbjct: 181 SCKSDNSE----ITNFNLSVGITEDFMKAVEHNLEYELLDPKT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 + K++A ++ ++ M ++ G P I F D N + +G + S+N Sbjct: 220 ----------KEPVAKLNAKEVFDIIVEMAWKNGEPGIIFLDRLNRDNVTPKLGEIESTN 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQF--DYDKLASTIRTAVRVLDNVIDINCH 641 C E L CNLGSINL ++ D++KL +T+R AVR LDNVI++N + Sbjct: 270 PCGEQPLLPY----EACNLGSINLYNMMDDSHKGLDFEKLENTVRKAVRFLDNVIEVNKY 325 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + + K R IGLG+MG+ L L + Y S A+++AD+ M FIS A+ AS L Sbjct: 326 PLPEIDKMTRGTRKIGLGVMGWADTLCALGLAYNSQAAIDLADKVMSFISDIAMKASQNL 385 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+ +G + ++ S++DQ + + + Sbjct: 386 AELKGVFPFYEDSIYDQ---------------KGIKVRNATTTTIAPTGTL--------- 421 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAM 820 + I GVS I+P + Y+++ M + + VN + + E + Sbjct: 422 -----------SLIAGVSSGIEPIFAISYIRNVMDNSELVEVNPVFKGAALSGNFYSEEL 470 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + G++ N+ +P +++I TA ++ P W ++ + Q+ D A S + L + Sbjct: 471 MKKIARV-GTVKNMNEVPVQVQEIFVTAHDVLPEWHVKMQAAFQRHTDNAVSKTVNLSHD 529 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 + + ++ A+ K R S + K + NA + + Sbjct: 530 ATTDDVREVFTLAYKTQCKGVTIYRDGSRDLQVLNIGKVKGKEENADKELQAGENIY--- 586 Query: 940 IPSSCTSDTECEVC 953 C+ C Sbjct: 587 ----------CDSC 590 >gi|269925171|ref|YP_003321794.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] gi|269788831|gb|ACZ40972.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobaculum terrenum ATCC BAA-798] Length = 811 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 165/689 (23%), Positives = 281/689 (40%), Gaps = 96/689 (13%) Query: 276 FDLVYLAND-LKYERDFAFEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKE 332 DL + R E +I DRY NG+ +E P+ ++RVA +A E Sbjct: 16 EDLEREVQALIDSGRATKLEGYREKIFLDRYARKDPNGTPLEHYPEEMWLRVAKAIAAVE 75 Query: 333 TEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVP-DDLYGIFGAL 387 E + + FY++L F F+ L +G+ +CF+ P D + GIF + Sbjct: 76 PNPEAQRQWTLRFYDILQGFRFVPGGRILSGAGSGAEVTYYNCFVIPSPEDSVEGIFRNI 135 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA-VNQGGKRKG 446 A + + SGG+G + + +R GA+I NG S G + + +D + QGG R+G Sbjct: 136 TTAAHIMRRSGGVGVNLSSLRPRGAYIKTVNGTSSGPCSWAILYSDMTGKVIIQGGSRRG 195 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE 506 A+ L+ H D+EEF++ ++ N + + D FM+ V ++ W L Sbjct: 196 ALMIMLDDDHPDIEEFVEYKRKNPG---HIDHANLSVAVSDAFMEAVKKDLPWDLKW--- 249 Query: 507 VSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 + KV++ I A LWRK+ + P + F D Sbjct: 250 --------------------------QGKVWKTIRARDLWRKIAESAWAYAEPGLVFIDR 283 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN----QFDYDKLA 622 N RS + + N C E L VCNLG++NLLA + FD++ LA Sbjct: 284 YNKRSNTWYFENIRCVNPCGEQGLPP----WGVCNLGALNLLAFVKHIDGETYFDFEDLA 339 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHT-HRAIGLGLMGFQSALHLLHIPYASPEAVE 681 +T R A+R LDNVID + + +++ R GLG MG L L + Y SPEA Sbjct: 340 NTARVAIRFLDNVIDATVYPFPENEEAQKHGARRTGLGTMGLADVLIKLGVKYGSPEAEP 399 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + + I A AS +LA E+G + F + QG F Sbjct: 400 LVERIYRTIRDAAYDASADLAAEKGPFPKFDRDKYMQGEF-------------------- 439 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 R +E++ +++ G+RN+ + APT T +++ GV+ I+P + + + + G+ + Sbjct: 440 IRELPEEIQAKIRRQGIRNAVLLTQAPTGTTSSLAGVNSGIEPVFAFVTKRRDRLGEHLL 499 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 + + P L ++ ++ P I + Sbjct: 500 YHPLAQEWMDAH---------------------PGKP--LPDYFVSSADLTPEEHIRIQA 536 Query: 862 RRQKWIDQAQSLNLY-LDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 QK+ D + S + ++ + + ++ +Y A+ G K Y R S +V ++ Sbjct: 537 VVQKYTDSSISKTVNGPEDNTVEDVERLYMLAYDTGCKGITYYRQGSRDAVLEAV--DTK 594 Query: 921 GKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 K A + ++H S+ + Sbjct: 595 PKEKAEKPEEAPKASHPEVHRSTLKKRPD 623 >gi|124485031|ref|YP_001029647.1| hypothetical protein Mlab_0204 [Methanocorpusculum labreanum Z] gi|124362572|gb|ABN06380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanocorpusculum labreanum Z] Length = 736 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 159/624 (25%), Positives = 265/624 (42%), Gaps = 92/624 (14%) Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 + RVA L E E+++ + S F+ ++PTL N+GT QLS+CF V Sbjct: 23 EDVCRRVADALGETPEE----TKEYFDAMMSLSFLPNSPTLMNAGTPLGQLSACFTLPVN 78 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D L IF A++ A++ + GG G +++ +R G+ + T+G + G + F++V N Sbjct: 79 DSLPEIFDAIRWGAIIHQSGGGTGYNFSHLRPEGSPVRSTDGVASGPVSFMRVFNAATDV 138 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 + QGG+R+GA L WH D+ +F+ + GD + N + + D FM V + Sbjct: 139 IKQGGRRRGANMGILNVWHPDIMKFIKSKAKEGD----FSNFNISVMVSDAFMDLVAKGE 194 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 + + I+ +W ++ +++ G Sbjct: 195 K--------------------DKVWVTNTDGVG---------ITVGEIWEGIIEGVWKNG 225 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 P I F D N ++P ++G + ++N C E L C LGSINL + + Sbjct: 226 EPGILFYDTINRKNPTPNLGEIDTTNPCGEQPLLPF----ESCVLGSINLAKFIRADGLN 281 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y+ L R +R LD VI N I + + + + R +GLGLMG A+ +L IPY S Sbjct: 282 YEALDKMTRMGIRFLDAVITKNVFPIPEIRDATNRTRKVGLGLMGVHDAMLMLRIPYDSE 341 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 E ME I+ A+ SV L +E+G + +++GS+WD Sbjct: 342 AGRNFCIEVMERINNVAVEESVILGKEKGTFPAYEGSVWD-------------------- 381 Query: 738 MNRTSRLPWDELKKRVKTIG--MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 G MRN+ IAPT TI+ + G S I+P + Y + N Sbjct: 382 -----------------KQGIIMRNAALTTIAPTGTISLLAGCSSGIEPVFSFAYTRRNT 424 Query: 796 SGD-FTVVNSFLVNELKQ-------RDLWDEAMISDLKYH---DGSIGNIERIPDDLKKI 844 G F +V+ + +EL++ EA ++ H GS+ +I +PD K + Sbjct: 425 VGKTFVMVHPYFESELRRVITAMGLTGAEAEAKRDEVINHVHETGSVQDIAWLPDTFKAV 484 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 TA +I + + QK + + S + + + + ++ AW G+K Sbjct: 485 FKTALDIGWKDHVLMQAAFQKHVHASISKTINMPVTATKEDVEKAVILAWREGIKGMTLY 544 Query: 904 RSRSATSVEKSTLKGVDGKLNAVP 927 R+ S V + K + A P Sbjct: 545 RTGSREDVVLALEKQEIKPVEASP 568 >gi|320353411|ref|YP_004194750.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobulbus propionicus DSM 2032] gi|320121913|gb|ADW17459.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfobulbus propionicus DSM 2032] Length = 723 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 157/659 (23%), Positives = 265/659 (40%), Gaps = 80/659 (12%) Query: 292 AFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAVEFYNLLS 347 +L RY+L G +E + RV+ +A + + E A F+ ++ Sbjct: 9 QLTDTAETVLERRYYLKDAEGKPLENWETLCRRVSNAVAQVDLDQPDYEGLADRFFTMIY 68 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F+ ++P L N+GT QLS+CF+ V D + GIF +++ A++ K GG G ++ + Sbjct: 69 YLDFLPNSPCLMNAGTDLGQLSACFVLPVEDSMDGIFTSIRNGALVHKTGGGTGYSFSRL 128 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R + + T G + G + F V + + QGGKR+GA L H D+ EF+ ++ Sbjct: 129 RPKNSAVQSTQGVASGPLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDILEFIVAKQ 188 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D+ R + N + I DLFM+ V + + L P Sbjct: 189 ----DQTRYTNFNFSVAITDLFMEAVKNDQEYDLIDPS---------------------- 222 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + R + A ++ K++ + + G P + F D N + +G ++N C E Sbjct: 223 -----NGDIIRTLRAREVFDKIVDLAWHNGEPGVLFIDAANRDNTTPQLGKFEATNPCGE 277 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 L CNLGSINL + N + D+++L +T R AVR LDNVID N I + Sbjct: 278 QWLLPY----ESCNLGSINLGQYVKNGKVDWERLGATARLAVRFLDNVIDCNRFPIPEIA 333 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R +GLG+MG L L +PY S E + A E M F+ A +AS+ELA +G Sbjct: 334 EMTQKTRKVGLGIMGLHDMLIQLELPYGSEEGRQAAAEVMAFVRTEAEAASIELATMKGP 393 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + ++ + R N+ +I Sbjct: 394 FPAYD-----------ERFNTYPARR--------------------------NAALTSIQ 416 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT T++ I + +P + + +K+ M D +VN + + ++ + Sbjct: 417 PTGTVSMIADCASGCEPYFSIVMIKNVMDNDRLLMVNKLFERIARAEGFYSAELMEKVAK 476 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLD-EPSGKK 884 G++ IP ++I TA +I P I QK +D + S + L + Sbjct: 477 S-GTVIGHAAIPKRWQEIFRTAQDISPEQHIRMQGVLQKNGVDSSISKTINLPSSATQDD 535 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 + Y + +G K R S +T+ K + S+ Sbjct: 536 VRTAYMLGFELGCKGLTVYRDGSRDHQVLNTVASSADKTAVAGSEGLVQKATLPDVLSA 594 >gi|317052120|ref|YP_004113236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurispirillum indicum S5] gi|316947204|gb|ADU66680.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfurispirillum indicum S5] Length = 725 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 161/650 (24%), Positives = 268/650 (41%), Gaps = 80/650 (12%) Query: 289 RDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKE---TEKEKRAVEFYN 344 R + +L RY+L G +E + RVA +AL + + E+ F++ Sbjct: 6 RKVSLTETAETVLQRRYYLKDAQGHPVENWEKLCRRVANAVALPDRELDDYEEVRDHFFS 65 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L+ S F+ ++P L N+GT QLS+CF+ V D + GIF A++ A++ K GG G + Sbjct: 66 LIYSLDFLPNSPCLMNAGTGIGQLSACFVLPVEDSMEGIFTAVKNGALVHKTGGGTGYSF 125 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R A + T G + G + F V + + QGGKR+GA + H D+ +F+ Sbjct: 126 SRLRPRNATVSSTQGVASGPLSFAAVFDVATETIKQGGKRRGANMGVMRVDHPDIMDFI- 184 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +D+ R ++ N + I D FM+ + + L P Sbjct: 185 ---CAKEDQTRFNNFNFSVAITDEFMQALYDEREYALVDPVT------------------ 223 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++ ++A ++ K++ + + G P + F D N +P +G ++N Sbjct: 224 ---------KEIVSSLNARTVFDKIVDLAWHNGEPGVLFIDAANRANPTPQLGEFEATNP 274 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIE 644 C E L CNLGSINL + DYD+LA T R A R LDNVID N I Sbjct: 275 CGEQWLLPY----ESCNLGSINLGNFVEGGRVDYDRLARTTRLATRFLDNVIDCNVFPIP 330 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + K+ R IGLG+MG L + + YAS E ++ E M++I + S+ELA+ Sbjct: 331 EIKEMTMKTRKIGLGIMGMHDMLIQMGLSYASNEGRKLCAEVMKYIRTISEETSIELAKV 390 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G + D R RN+ Sbjct: 391 KGPFP------------AFDPAINTYTPR-------------------------RNAALT 413 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISD 823 +I PT T++ I + +P + + VK M GD +VN + + +++ Sbjct: 414 SIQPTGTVSMIADCASGCEPYFSIVMVKHVMDGDKLLMVNKHFEEIARAEGFYSTELMAR 473 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLDE-PS 881 + G++ E IP ++I TA +I P I+ Q+ +D + S + + + Sbjct: 474 VADS-GTVVGHEEIPVKWQEIFCTAQDITPSDHIQMQGILQQSGVDSSISKTINMPNTAT 532 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 + + Y + MG K R S +T + V Sbjct: 533 KEDVRLAYLMGYEMGCKGLTVYRDGSRDGQVLNTKSASEASQKEAMVNSQ 582 >gi|237756543|ref|ZP_04585069.1| ribonucleoside-diphosphate reductase subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] gi|237691302|gb|EEP60384.1| ribonucleoside-diphosphate reductase subunit alpha [Sulfurihydrogenibium yellowstonense SS-5] Length = 538 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 188/575 (32%), Positives = 289/575 (50%), Gaps = 85/575 (14%) Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ + A+ QGG+R+ + YL+ WH+DVE FLDLR+ TG+ RT +NTA W+PD Sbjct: 1 IKIFDTIVNAIQQGGRRRSSQVMYLQPWHLDVEAFLDLRETTGNPYFRTPSLNTALWMPD 60 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 M+R+ + LF P E L +G+EF Y+ +A+RGE+++++KI + ++ Sbjct: 61 EIMRRIKEGEPIYLFDPAECRQLVTAWGEEFAKKYQECIEKAERGELQLWKKIDSRDFYK 120 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 K L L +TGHPW+TFKD N +P GV++SSNLCTEI++ +S + TAVC L S+NL Sbjct: 121 KYLFKLAKTGHPWLTFKDAHNRHNPCPKYGVINSSNLCTEISIPNSPQSTAVCTLASVNL 180 Query: 608 LAHFAN--------------------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 H + D+DKL T+ T V LDN++D N + E+++ Sbjct: 181 ERHLKKVEREESNSNETTSHVSRFTSHVIDWDKLKDTLETMVVALDNILDKNFYPSEESR 240 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 ++ R IG+GLMGF AL L IPY S EAV++A E +F+ S ELA+ERGA Sbjct: 241 RNTMDLRPIGIGLMGFHEALIYLGIPYDSDEAVQLAKEIAKFMRETVYRKSEELAKERGA 300 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + +D RN+ +AIA Sbjct: 301 FPHYYEGNYDYPP-------------------------------------RRNAVLLAIA 323 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PTA+I+ I G S SID + N++ + +SG F VVN L+ L+++ +W+E ++ +K + Sbjct: 324 PTASISIIAGTSSSIDNYFSNIFSRDTLSGKFIVVNKPLMKMLEEKGIWNEEILEKIKAN 383 Query: 828 DGSIGNIERIPDDL-KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD 886 GSI I+ + + K++ TA+E+ P I+ A+ Q++IDQA S +LY++E ++ Sbjct: 384 QGSIQYIDELEGVVDKRLFKTAYEVSPYRQIDIAAAFQQYIDQAVSKSLYIEEDLRDDME 443 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD-----------------------GKL 923 IY AW GLK+TYY EK T+ ++ Sbjct: 444 SIYMYAWEKGLKSTYYCFIDKTIKGEKYTMNVNKRGERRGFGLARAKDQVNKDLEELERM 503 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDT----ECEVCQ 954 D G +C +D C C+ Sbjct: 504 AREKYGDEVVDKVKAGNLDACPTDPLLAKICPSCE 538 >gi|45686076|ref|YP_003839.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum virus] gi|37722500|gb|AAP33245.1| ribonucleoside-diphosphate reductase [Ambystoma tigrinum stebbensi virus] Length = 565 Score = 351 bits (900), Expect = 4e-94, Method: Composition-based stats. Identities = 173/632 (27%), Positives = 252/632 (39%), Gaps = 117/632 (18%) Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 K K A + + F S+P L S T SCFL VPD + G+ E L Sbjct: 39 CKPKLAEKLRDYACKGWFGYSSPIL-TSVTGSGLPISCFLLYVPDTIEGLVDHTSELRWL 97 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 + GG+ W + G + KS G IPFL + A QG R+G+ AY+ Sbjct: 98 SVMGGGVAGHWDD-------VRGPSAKSCGTIPFLHTVDADMSAYWQGKVRRGSYAAYMS 150 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ EF+ +R TGD R+ +++ I D+FM V + W L P Sbjct: 151 ISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDVFMMCVERGENWDLVDPKS------- 203 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP- 572 V +SA LW ++L F TG P++ F D N Sbjct: 204 --------------------GAVAHTVSARELWERILETRFRTGEPYLNFIDAANRGLHP 243 Query: 573 --QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 ++ + SNLC EI L ++++ TAVC L S+NL + D + + V Sbjct: 244 ALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNLERY------DEWRETDLVECLVE 297 Query: 631 VLDNVIDINC-------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +LDNVI +A +S R+IGLG MG+ L IP+ S EAV + Sbjct: 298 MLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFDSEEAVRLT 357 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 I A+ A+ LA+ERG G Sbjct: 358 GIIFGGIKSAAVRATRALAKERGEAPDLTGC----------------------------- 388 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 G+RN++ +A+AP A A + G S S++P YV G VN Sbjct: 389 -------------GVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVN 435 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L +L+ L E + + + GS+ +I +PD LKK++ T+FE+D +++ A+ R Sbjct: 436 PYLKRDLESLGLDTEKVWDSIVLNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVKQAAER 495 Query: 864 QKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 Q+ + Q QSLNL+ L ++R AW G K YYLR T G G Sbjct: 496 QRHLCQGQSLNLFFPMGADKTDLSDVHRLAWKSGCKGLYYLR----------TCAGRTGH 545 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 P + C CQ Sbjct: 546 KIFEAKKSPEKTK-------------GCTACQ 564 >gi|126725814|ref|ZP_01741656.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales bacterium HTCC2150] gi|126705018|gb|EBA04109.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales bacterium HTCC2150] Length = 757 Score = 351 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 159/654 (24%), Positives = 258/654 (39%), Gaps = 85/654 (12%) Query: 302 YDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G +E + + R+A LA E + + +FYN L F F+ + Sbjct: 15 MKYRLKDEDGKALETSVEDSWRRIANDLASVEKDPKAWEGKFYNALEDFKFLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTGRAVTLFNCFVMGTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAVVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ +K D R Sbjct: 135 ADASGPLSFMDVWDSMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAKK----DAARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V + GW L KV+R Sbjct: 191 FNVSVLITDPFMEAVKADKGWDLVFG-----------------------------GKVYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW ++ +E P + F D N + + + ++N C E L Sbjct: 222 TVQARDLWDSIMESTYEFAEPGVIFIDRINKMNNLNYCESIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL Q D LA + TAVR++DNV+D + +E + Sbjct: 278 ACLLGSINLARLVADPFGKAAQLDEPALADLVTTAVRMMDNVVDASKFPLEAQAREAAAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S EA +++ ++ I+ A AS LA E+GA+ F+ Sbjct: 338 RRIGLGVTGLADALLMVGVRYGSEEAARLSERWLKAIARAAYLASAHLAGEKGAFPLFEA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + ++K + G+RN+ +IAPT TI+ Sbjct: 398 EP--------------------FLASGSLEDMDQDVKDAIAENGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + M D Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YSVKMWRD--------- 481 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + +L A + P+ + S QKWID + S + + S +Y Sbjct: 482 --KFGDAELPDYFVNAQTLAPLDHVRMQSAAQKWIDSSISKTINCPEDISFDDFKEVYMA 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 AW G K R + T + + D A D + L P S Sbjct: 540 AWDQGCKGCTTYRPNAVTGSVLTVSETSDAAPEADVGADVVYLSEPLERPQSLE 593 >gi|283832327|ref|ZP_06352068.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] gi|291071974|gb|EFE10083.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] Length = 653 Score = 351 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 170/666 (25%), Positives = 266/666 (39%), Gaps = 59/666 (8%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMP 317 +E G L E + + + + + ++RD F Y ++ L +Y + G E Sbjct: 2 VEMGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESA 61 Query: 318 QAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 Q ++ VA L + + FY+ +S+F TP + T Q SSC L Sbjct: 62 QFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIE 121 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I G+G + +R LG+ I G G IPF K Sbjct: 122 CGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAV 181 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 + +QGG R GA + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 182 KSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLK 241 Query: 496 NAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 TLFSP +V L+D + EFE Y YE + +++ AV L+ M+ Sbjct: 242 GGDITLFSPSDVPGLYDAFFADQDEFERLYTQYE----NDDSIRKQRVKAVELFSLMMQE 297 Query: 553 LFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 TG +I D CN SP V V SNLC EI L + G I L Sbjct: 298 RASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLTDVNDENGEIALCTLS 357 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D+L AVR LD ++D + I AK+ R +G+G++ + L Sbjct: 358 AFNLGAINSLDELEELAVLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINYAYWLA 417 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 Y+ A + ++ E I ++ + AS ELA E+GA F + + QG+ PID+ Sbjct: 418 KNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYSQGILPIDTYKK 477 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + N L W+ L++ +KT G+RNS A+ P+ T + I + I+P Sbjct: 478 DLDAI----SNEPLHLDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGY 533 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + +K++ G V + L + Sbjct: 534 VSIKASKDGILRQVVPDY--------------------------------EHLHDAYELL 561 Query: 849 FEIDPMW-LIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTT 900 +E+ ++ QK+IDQ+ S N D + ++L A+ G+KT Sbjct: 562 WEMPSNDGYLQLVGIMQKFIDQSISANTNYDPTRFPSGKVPMQQLLKDLLTAYKFGVKTL 621 Query: 901 YYLRSR 906 YY +R Sbjct: 622 YYQNTR 627 >gi|146279531|ref|YP_001169689.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC 17025] gi|145557772|gb|ABP72384.1| hypothetical protein Rsph17025_3514 [Rhodobacter sphaeroides ATCC 17025] Length = 753 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 152/640 (23%), Positives = 256/640 (40%), Gaps = 85/640 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + R+A LA E + + FY L F F+ + +GT L +CF+ Sbjct: 30 TVEDTWRRIARSLAEVEADPQLWEDRFYAALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD + GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F++ +K D R N + + D FM+ V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L KV++ + A LW +++ Sbjct: 206 KADGPWDLTFG-----------------------------GKVYKTLEARDLWNRIMRST 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + + + ++N C E L C LGS+NL Sbjct: 237 YDFAEPGVIFIDRINRMNNLAYCETIAATNPCGEQPLPPY----GACLLGSVNLARLVTG 292 Query: 614 NQFDYDKLAST-----IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D +L +R AVR++DNV+D + + + R IGLG+ G AL Sbjct: 293 AFSDEARLDLAALDDLVRLAVRMMDNVVDASRFPLPEQANEAQMKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 ++ + Y S EA E + M+ I+ A ASV+LA+E+GA+ F+ + Sbjct: 353 MVGLRYGSEEAAERTEAWMKAIARSAYLASVDLAREKGAFPLFEAEKY------------ 400 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 + + +++++ +++ G+RN+ +IAPT TI+ G S I+P + Sbjct: 401 --------LASGSLTHMDEDVREAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D T +V+ + LW E M L Sbjct: 453 YAYKRKVLQKDGTRTEEEVVDYAVR--LWREKMGD----------------APLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ + + QKWID + S + + S +Y AW G K R Sbjct: 495 AQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDDFADVYLAAWDQGCKGCTTYRPN 554 Query: 907 SATS-VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 T V + + T L P++ Sbjct: 555 EVTGSVLTVSEAAAAPAPTPEKAGEVVYLTDPLDRPAALE 594 >gi|327198237|ref|YP_004306813.1| putative ribonucleotide reductase A subunit [Pseudomonas phage KPP10] gi|297591763|dbj|BAJ09183.1| putative ribonucleotide reductase A subunit [Pseudomonas phage KPP10] gi|323145835|gb|ADX32076.1| hypothetical protein nrdE [Pseudomonas phage P3_CHA] gi|323146021|gb|ADX32261.1| hypothetical protein nrdE [Pseudomonas phage PAK_P3] Length = 618 Score = 350 bits (897), Expect = 9e-94, Method: Composition-based stats. Identities = 183/705 (25%), Positives = 278/705 (39%), Gaps = 135/705 (19%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + Y D GL +L F PQ R A+ + + A Y Sbjct: 13 IDYSLDRTIPEQGLAMLTSDGFYKKEHET--SPQQTLSRAAVSYCFGDYD---FAQRMYG 67 Query: 345 LLSSFHFMCSTPTLFNS-----------------------GTRHPQLSSCFLTTVPDDLY 381 S + ++P N+ SCFL+ + D Sbjct: 68 YFSRQWAVPASPVQTNALDIEWPNFTEEQFDEAGDWLQENIDTTGMPISCFLSMIADSRK 127 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 G+ A E L+ G+ A I + S GVI + A Q Sbjct: 128 GLTTASGEAKELSMA--------GGGVGVYAGIRAPDELSTGVIEHAGDYDVMCRAYRQT 179 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKN-TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 R+G++ YL+ H + FL +R GD + + ++N IPD FM+ V + W Sbjct: 180 RTRRGSMAMYLDVAHPEFPVFLQMRNPVGGDPKLKRFNLNNGANIPDAFMEAVIKGEDWE 239 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 P K RK+ A LW +ML + +TG P+ Sbjct: 240 FVDPKH---------------------------GKTGRKVPARELWEEMLQVRKDTGEPF 272 Query: 561 ITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD 617 + F D N + V SNLC+EITL +S + TAVC L S+NL + Sbjct: 273 MLFVDTVNRNLPECITHPLYRVRQSNLCSEITLYTSFKRTAVCCLSSVNLGTYDE----- 327 Query: 618 YDKLASTIRTAVRVLDNVIDINC----HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + I VR LDNV++ ++ +A S RAIGLG MGF + L IP Sbjct: 328 WKDDPLFIADMVRFLDNVLEFFIRLAPPSMHRAVHSASKERAIGLGTMGFHTLLQQRMIP 387 Query: 674 YA---SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + ++ + + I A+ AS+EL + RG +GS Sbjct: 388 FESGGMGGMQQLNYQVYKQIKEQAVQASLELGRSRGEAPDCQGS---------------- 431 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 G RNS+ +AIAP A +++ VS S +P N + Sbjct: 432 --------------------------GRRNSHLLAIAPNANSSSLVNVSPSTEPWAGNCF 465 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 +G F + N +L EL++ L + + +GS +IE + D++K + T E Sbjct: 466 NAQGRAGSFLIKNEYLRRELEKVGLDTKETWRSINDAEGSCQHIEGLSDEVKAVFKTIRE 525 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 I PMWLIE+A+ RQ +I Q+QS+NLY+ + + +++ I+ AW GLK+ YY RS++A Sbjct: 526 ISPMWLIEAAAGRQPFICQSQSVNLYVHPDITLQEMSDIHIYAWHKGLKSLYYCRSKAAK 585 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 S++ T G LNA+PV + C CQ Sbjct: 586 SMKVGT--GGAEPLNALPVRYT-----------ISLDEDTCLSCQ 617 >gi|320538994|ref|ZP_08038669.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia symbiotica str. Tucson] gi|320030927|gb|EFW12931.1| ribonucleoside diphosphate reductase 1, alpha subunit [Serratia symbiotica str. Tucson] Length = 656 Score = 350 bits (897), Expect = 9e-94, Method: Composition-based stats. Identities = 168/691 (24%), Positives = 271/691 (39%), Gaps = 57/691 (8%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIE 315 R +E G +LL E + + + + RD F Y ++ L +Y ++G E Sbjct: 2 RMVEMGKYDKLLLEDYSAEEFEQMDAFIDHWRDMNFSYAAVKQLEGKYLVQNRVSGEIYE 61 Query: 316 MPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 Q ++ VA L + FYN +S+F TP + T Q SSC L Sbjct: 62 SAQFLYILVAACLFSNYPRETRLDYVKRFYNAISTFKISLPTPIMSGVRTPTRQFSSCVL 121 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D L I G+G + +R LG+ I G G IPF K Sbjct: 122 IECGDSLDSINATSSAIVKYVSQRAGIGVNAGRIRALGSPIRGGEAFHTGCIPFYKHFQT 181 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +QGG R GA + WH++VE L L+ N G + R M+ + L +R+ Sbjct: 182 AVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQLNRLMYQRL 241 Query: 494 TQNAGWTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + TLFSP +V L+ + EFE Y YE+ + +++ AV L+ M+ Sbjct: 242 IKGQDITLFSPSDVPGLYAAFFADQDEFERLYTEYEQD----DSIRQKRVKAVELFSLMM 297 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 298 QERASTGRIYIQNVDHCNTHSPFDPQIAPVRQSNLCLEIALPTKPLDDVNDENGEIALCT 357 Query: 610 ---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + D L AVR LD ++D + I+ A + R +G+G++ F Sbjct: 358 LSAFNLGTIDNLDDLEELATLAVRSLDALLDYQDYPIKAAHRGAMGRRTLGVGVINFAHY 417 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L + Y+ A + ++ E I ++ + AS LAQE+GA F + + QG+ PID+ Sbjct: 418 LAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNRLAQEQGACPWFNETSYSQGILPIDTY 477 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + + N W+ L++ ++ G+ NS A+ P+ T + I + I+P Sbjct: 478 KKDLD----VICNEPLHYDWETLRQEIQETGLSNSTLSALMPSETSSQISNATNGIEPPR 533 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 ++ +K++ G V D ++ ++ ++G + Sbjct: 534 GHISIKASKDGILRQVVPEYECL-----KNDYELLWEMPNNEGYLQ-------------- 574 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKT 899 QK+IDQ+ S N D + K+L A+ G+KT Sbjct: 575 ------------LVGLMQKFIDQSISANTNYDPTRFPGGKVPMKQLLKDLLTAYKFGVKT 622 Query: 900 TYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 YY +R + L + Sbjct: 623 LYYQNTRDGAEDIQGDLHPAKADDDGCESGA 653 >gi|163738452|ref|ZP_02145867.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis BS107] gi|161388373|gb|EDQ12727.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis BS107] Length = 765 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 152/657 (23%), Positives = 260/657 (39%), Gaps = 85/657 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I + + + R+A LA E++ + +FY L F ++ + Sbjct: 15 MKYRFKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV++ Sbjct: 191 FNMSVLVTDPFMEAVKADGSWELIF-----------------------------DGKVYQ 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL N D + L + TAVR++DNV+D++ ++ + Sbjct: 278 ACLLGSINLARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA ++ + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +D ++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 DAYLASGTMMD--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ +W + Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWRDKFGDK--------- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P ++ + QKWID + S + + S +Y Q Sbjct: 487 -------ELPDYFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW +G K R T S + D + G Sbjct: 540 AWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADISESGAAEVVYMSE 596 >gi|163742138|ref|ZP_02149526.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis 2.10] gi|161384468|gb|EDQ08849.1| ribonucleoside-diphosphate reductase, putative [Phaeobacter gallaeciensis 2.10] Length = 765 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 151/657 (22%), Positives = 260/657 (39%), Gaps = 85/657 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I + + + R+A LA E++ + +FY L F ++ + Sbjct: 15 MKYRFKQADGTPIDQTVEDSWRRIARDLARAESDPKTWEDKFYGALEDFQYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + K+++ Sbjct: 191 FNMSVLVTDPFMEAVKADGSWELIF-----------------------------DGKIYQ 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL N D + L + TAVR++DNV+D++ ++ + Sbjct: 278 ACLLGSINLARLVKNPFETESELDPEGLKDLVATAVRMMDNVVDVSKFPLDAQAQEAQNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA ++ + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTEDWLHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +D ++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 DAYLASGTMMD--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ +W + Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWRDKFGDK--------- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P ++ + QKWID + S + + S +Y Q Sbjct: 487 -------ELPDYFVNAQTLSPSEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW +G K R T S + D + G Sbjct: 540 AWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADISESGAAEVVYMSE 596 >gi|167947197|ref|ZP_02534271.1| Ribonucleoside-diphosphate reductase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 438 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 225/376 (59%), Positives = 281/376 (74%), Gaps = 2/376 (0%) Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA-YENYERQADRGEIKVFRKISAV 543 IPDLFMKRV + WTL P + + Y E +A RGEIKVFR + AV Sbjct: 1 IPDLFMKRVAEEGDWTLVLPQRGARPARPHRWLSSRPSYTACEEKAARGEIKVFRSLKAV 60 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LWRKML ML+ETGHPWITFKDPCNIR QH GVVHSSNLCTEITL+++ E AVCNLG Sbjct: 61 DLWRKMLGMLYETGHPWITFKDPCNIRYTNQHAGVVHSSNLCTEITLHTNDSEIAVCNLG 120 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 S+NL AH N D KL T+ TA+R+LDNVID N +++ +A+ SN HR +GLG++GF Sbjct: 121 SVNLAAHVDENGLDIAKLERTVTTAMRMLDNVIDYNYYSVPQARHSNLRHRPVGLGILGF 180 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 Q AL+ I YAS +A+ AD SME +S++AI AS ELA ERG YSS++GSLW QGV PI Sbjct: 181 QDALYKQRIGYASEQALTFADRSMEAVSYYAIQASSELAAERGRYSSYEGSLWSQGVLPI 240 Query: 724 DSIGLLAEVRD-ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSI 782 DS+ L + R L ++++S L WD L+++VKT GMRNSN MAIAPTATI+NI GVSQSI Sbjct: 241 DSLQQLKQARGDYLQIDQSSSLDWDALREKVKTQGMRNSNTMAIAPTATISNIVGVSQSI 300 Query: 783 DPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 +P+YQNL+VKSN+SG+FTVVN +LV++LK+ LWDE MI+DLKY+DGS+ IER+P +LK Sbjct: 301 EPTYQNLFVKSNLSGEFTVVNPYLVHDLKREGLWDEVMINDLKYYDGSLAPIERVPAELK 360 Query: 843 KIHATAFEIDPMWLIE 858 ++ATAFEIDP WL+E Sbjct: 361 VLYATAFEIDPRWLVE 376 >gi|145633335|ref|ZP_01789066.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 3655] gi|144986181|gb|EDJ92771.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae 3655] Length = 645 Score = 348 bits (893), Expect = 3e-93, Method: Composition-based stats. Identities = 161/672 (23%), Positives = 268/672 (39%), Gaps = 57/672 (8%) Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322 + L + + + + + RD F Y ++ L +Y + G E Q ++ Sbjct: 4 YDQALLDDYTREEWDAMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYL 63 Query: 323 RVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 V+ L + + FY+ S+F TP + T Q SSC L D L Sbjct: 64 LVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDSL 123 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I G+G + +R LG+ I G G IPF K + +Q Sbjct: 124 DSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSCSQ 183 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG R GA Y WH++ E L L+ N G + R M+ + L +R+ + T Sbjct: 184 GGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGEIT 243 Query: 501 LFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP +V L++ + +FE Y YE+ + R + AV ++ ++ TG Sbjct: 244 LFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERASTG 299 Query: 558 HPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HFAN 613 +I D CN SP V SNLC EI L + + G I L Sbjct: 300 RIYIQNVDHCNTHSPFDPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFNLG 359 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + D+L AVR LD ++D + + AK+S+ R++G+G++ + L + Sbjct: 360 KIENLDELEELADLAVRSLDALLDYQDYPVVAAKRSSLARRSLGIGVINYAYYLAKNGVR 419 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y+ A ++ + E I ++ + AS+ LA+E+GA F + + +G+ PID+ + Sbjct: 420 YSDGSANDLTHRTFEAIQYYLLKASMNLAKEQGACEYFNETTYAKGILPIDTYKKDLDS- 478 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 W+ L+K ++ G+RNS A+ P+ T + I + I+P ++ +K+ Sbjct: 479 ---LTQEPLHYDWESLRKDIQEFGLRNSTLTALMPSETSSQISNATNGIEPPRGHVSIKA 535 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + G V N + + ++ D+ +DG + Sbjct: 536 SKDGILKQVVPEYENL-----MDNYELLWDIPSNDGYLH--------------------- 569 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 QK++DQA S N D + K L A+ GLKT YY +R Sbjct: 570 -----LVGIMQKFVDQAISANTNYDPKRFEDGKVPMKVLLKDLLTAYKYGLKTLYYQNTR 624 Query: 907 SATSVEKSTLKG 918 + L Sbjct: 625 DGAEDVQEDLDD 636 >gi|260425806|ref|ZP_05779786.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Citreicella sp. SE45] gi|260423746|gb|EEX16996.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Citreicella sp. SE45] Length = 760 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 157/657 (23%), Positives = 263/657 (40%), Gaps = 85/657 (12%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +GS I+ + + R+A LA ET+ E FY L F ++ + Sbjct: 15 MKYRFKEADGSPIDVTVEDSWRRIARSLASVETDAEGWEQRFYEALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARSVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVAGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAKA----DSARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L D KV+R Sbjct: 191 FNLSVLVTDAFMEAVKADGSWELVYGD-----------------------------KVYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVKARDLWNRIMRATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL D +L + + TAVR++DNV+D + + + + Sbjct: 278 ACLLGSINLARLVKQPFEAEAHLDEAELEALVATAVRMMDNVVDASRFPLPQQLEEAQNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL + + Y S EA + + I+ + ASVELA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMKGLRYGSKEAAAQTEAWLRLIARASYLASVELAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + ++ D+++ ++ G+RN+ +IAPT TI+ Sbjct: 398 EKYLATGNMLN--------------------MDDDVRDAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D T +V+ + M DLK Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGTRTEEEVVD-------YAVQMWRDLKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L + A +DP + + QKWID + S + + S + +Y Q Sbjct: 485 -----DAELPEYFVNAQTLDPQAHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 A+ G K R T S + + P ++ + S Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSESAEKTPADTPELAEEAAGGDVIYMSEPLDRP 596 >gi|163793808|ref|ZP_02187782.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium BAL199] gi|159180919|gb|EDP65436.1| Ribonucleotide reductase, alpha subunit [alpha proteobacterium BAL199] Length = 768 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 158/649 (24%), Positives = 267/649 (41%), Gaps = 86/649 (13%) Query: 299 QILYDRYFLHINGSRIE-MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCST 355 QI +Y L + G +E PQ + RVA LA E ++ + A FY + + F+ + Sbjct: 10 QIWDMKYRLRVEGEAVEASPQDSWRRVATALAEAEAPKDRARWAERFYEAMEGYRFLPAG 69 Query: 356 PTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 L +GT L +CF+ T+PD + GIF +L+E A+ + GG+G D++ +R GA Sbjct: 70 RILAGAGTGRSVTLFNCFVMGTIPDSMGGIFESLKEAALTMQQGGGIGYDFSTLRPRGAP 129 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + G + G + F+ V + + G R+GA+ A L H D+E F++ ++ D Sbjct: 130 VKGVGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATLRCDHPDIEAFVEAKR----DP 185 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R N + I D FM+ V + W L E Sbjct: 186 SRLRMFNLSVLITDPFMEAVKTDGDWDLVF-----------------------------E 216 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 +R + A ALW +++ ++ P + F D N R+ + + ++N C E L Sbjct: 217 GAAYRTVKARALWDRIMQTTYDVAEPGVIFIDRINQRNNLHYCETISATNPCGEQPLPPY 276 Query: 594 SEETAVCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 C LGS+NL A D LA + AVR++DNV+D++ +E Sbjct: 277 ----GACLLGSVNLATLIARPFEADAALDETALAEIVPLAVRMMDNVVDVSRFPLEAQAA 332 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 R IGLG+ G AL + Y SPEAV + M + HA AS++LA+E+G + Sbjct: 333 EARGKRRIGLGVTGLADALIFCGLRYGSPEAVATTERWMSLLRRHAYRASIDLAREKGPF 392 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F + G + R ++L++ + G+RN+ +IAP Sbjct: 393 PLFDAKPYLAG--------------------ESIRELDEDLREAIAEHGIRNALVTSIAP 432 Query: 769 TATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T TI+ VS ++P + Y ++ L+ + ++ + L Sbjct: 433 TGTISLFADNVSSGLEPVFSFTYDRTV-----------LMPDGSKKTEEVSDLAYRLYR- 480 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 ++ L A + P + + QK++D + S + + + Sbjct: 481 -----ELKGPDAPLTDAFVHAQSLAPSDHVVMQAAVQKYVDSSISKTINCPEDIDFEAFK 535 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 +YRQA+ G K R T +T + + A P ++T Sbjct: 536 SVYRQAYESGCKGCTTYRPNDVTGAVLATRREEPEQTAAEPQGSAETAT 584 >gi|322421033|ref|YP_004200256.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] gi|320127420|gb|ADW14980.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geobacter sp. M18] Length = 565 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 155/624 (24%), Positives = 262/624 (41%), Gaps = 76/624 (12%) Query: 291 FAFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKET----EKEKRAVEFYNL 345 ++L RY L G IE P+ F R+A +A E + F +L Sbjct: 1 MELSENARKVLQARYLLKNEEGEVIESPEEMFRRLARSIAAVEKSYGADPGLWEERFLDL 60 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 L+ F+ ++P + N+G QL++CF+ V D + GIF L+ A++ + GG G ++ Sbjct: 61 LTGLRFLPNSPAIMNAGKPAGQLAACFVLPVEDSMSGIFETLKNAALILQSGGGTGFSFS 120 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G + G + F+K+ N + QGG R+GA L H D+ EF+ + Sbjct: 121 RLRPRADLVRSTGGIASGPVSFMKIYNTATDIIKQGGARRGANMGILRVDHPDIVEFIRV 180 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K G+ + N + + DLFM+ ++++ + L +P Sbjct: 181 KKGAGE----LANFNISVAVTDLFMEELSRDGSYDLVNPRS------------------- 217 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 KV + A ++ +++ +ETG P + F D N +P +G S+N C Sbjct: 218 --------GKVAGRARAKEVFDEIVASAWETGDPGMIFIDRINRDNPTPGIGSFESTNPC 269 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L C LGS+NL + + + D + L + AVR LD+ ID N + + Sbjct: 270 GEQPLLPY----EACVLGSLNLARYVGSGELDLESLGGDVALAVRFLDDTIDANRYPLPA 325 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + + +R IGLG+MG+ L L IPY P A +A M+FI A +AS LA+ER Sbjct: 326 IEAMHKRNRKIGLGVMGWADLLIDLGIPYNDPRAFALAGSVMQFIRDRARNASAALAEER 385 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G + +F GS++D P + + Sbjct: 386 GVFPNFPGSVYDAPGMPRVRNATTTTIAPTGTL--------------------------- 418 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 A I S I+P + Y + + G+ N + K+ + E ++ +K Sbjct: 419 -------ATIADCSSGIEPLFALAYRRLILEGELVETNRHFIEIAKREGFYSEELLEGVK 471 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884 G++ E +P+ + + TA EI P IE Q++ D A S + L E + + Sbjct: 472 VT-GNLQGREEVPERYRALFRTALEIPPEDHIEMQRAFQRFTDNAVSKTVNLPEEATRED 530 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSA 908 + ++ A+ K R Sbjct: 531 VARVFLLAYEKECKGVTLFRYGCR 554 >gi|119383702|ref|YP_914758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paracoccus denitrificans PD1222] gi|119373469|gb|ABL69062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paracoccus denitrificans PD1222] Length = 754 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 155/639 (24%), Positives = 255/639 (39%), Gaps = 84/639 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + RVA LA E + FY L F F+ + L +GT L +CF+ Sbjct: 30 SVEDSWRRVARDLARVEKDPALWEDRFYAALEDFKFLPAGRILAGAGTGREVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+PD + GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F++ ++ D R N + + D FM+ V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIEAFIEAKQ----DSARLRMFNLSVLVTDAFMEAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L KV+ + A LW +++ Sbjct: 206 KADGPWDLQFG-----------------------------GKVYHTVRARDLWNRIMRAT 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N ++ + V ++N C E L C LGS+NL Sbjct: 237 YDYAEPGVIFIDRINQQNNLNYAETVAATNPCGEQPLPPY----GACLLGSVNLARLVEA 292 Query: 614 NQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + + L +RTAVR++DNV+D + + + R IGLG+ G AL Sbjct: 293 PFTAHARLNPEALDELVRTAVRMMDNVVDASKFPLPQQSAEAQAKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y + +AVE M+ I+ A ASV+LA+E+GA+ F + F Sbjct: 353 MLGLRYGAADAVEQTRVWMKAIARSAYLASVDLAREKGAFPLFDAKKYLASGFM------ 406 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 R +L++ V G+RN+ +IAPT TI+ G S I+P + Sbjct: 407 --------------RRMDADLREAVARHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + M DLK L Sbjct: 453 YAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLKG-----------DAPLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ + + Q+W+D + S + + S + +Y AW G K R Sbjct: 495 AQTLAPLDHVAMQAAAQEWVDSSISKTINCPEDISFEDFKDVYLAAWDKGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 T S + + A D T L P++ Sbjct: 555 EVTGSVLSVSEKTEEAPQADKGADVVYLTEPLDRPAALE 593 >gi|126733656|ref|ZP_01749403.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. CCS2] gi|126716522|gb|EBA13386.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. CCS2] Length = 760 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 154/658 (23%), Positives = 254/658 (38%), Gaps = 85/658 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I E + R+A LA E + +FY+ L F ++ + Sbjct: 15 MKYRFKEADGTPIDETVADTWTRIAGALAAVEDDPTAWESKFYDALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVMGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V + W L E V+R Sbjct: 191 FNMSVLITDPFMEAVKADGPWDLIFGGE-----------------------------VYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW ++ ++ P + F D N + + + ++N C E L Sbjct: 222 TVQARELWDAIMRSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ + D L + TAVR++DNV+D + +E + Sbjct: 278 ACLLGSINMARLVKDPFEDIAALDEAALTDLVATAVRMMDNVVDASRFPLEAQQAEAKAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S EA D+ M I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSQEAAAQTDKWMHQIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 ++ + + +++ + G+RN+ +IAPT TI+ Sbjct: 398 --------------------EQFLASGAMQGMDADVRDAIAEHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + + DLK Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQLWRDLKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L A + P+ + + QKWID + S + + S +Y Sbjct: 485 -----DAPLPDYFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDDFKEVYMA 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 AW G K R T S + V + + + E Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLSVSQEASPSEVPAQVRTEDEGAEVVYMSEPLDRPQE 597 >gi|51246679|ref|YP_066563.1| ribonucleoside-diphosphate reductase [Desulfotalea psychrophila LSv54] gi|50877716|emb|CAG37556.1| probable ribonucleoside-diphosphate reductase [Desulfotalea psychrophila LSv54] Length = 785 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 158/691 (22%), Positives = 281/691 (40%), Gaps = 85/691 (12%) Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN- 310 Y + + + + + +L RY+L + Sbjct: 26 YMVFLSLNRKGYPANYFYLIQYKNDIYKEVIMAPDV-MEQVLTTTAETVLARRYYLKDDA 84 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKR-------AVEFYNLLSSFHFMCSTPTLFNSGT 363 G+ +E +A RVA +A ++ + +F+ ++ F+ ++P L N+GT Sbjct: 85 GNSLEDWKALAHRVAEAVAPEDATGKNEVTGIKQLRDDFFTMIYQLDFLPNSPCLMNAGT 144 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 QLS+CF+ V D + GIF A++ A++ K GG G ++ +R A + T+G + G Sbjct: 145 EIGQLSACFVLPVEDSMDGIFTAIRNGALVHKTGGGTGYSFSRIRACNASVKSTHGVASG 204 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 + F V + + QGGKR+GA L H D+ F+ + +D+ + ++ N + Sbjct: 205 PLSFAAVFDAATETIKQGGKRRGANMGVLRVDHPDIMAFISAK----EDQDKFNNFNFSV 260 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 I DLFM + + + L P +V +++AV Sbjct: 261 AITDLFMAALEADKEYDLIEPST---------------------------GEVMGQLNAV 293 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 ++ K++ + + G P + F D N + +G ++N C E L CNLG Sbjct: 294 EVFAKIVDLAWHNGEPGVLFIDAANRDNTTPQLGDFEATNPCGEQWLLPY----ESCNLG 349 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGF 663 SINL N++ DY +L ++TA LDNVID N I + + R IGLG+MG Sbjct: 350 SINLGNFVKNDEVDYSRLGQIVKTATCFLDNVIDCNVFPIPEIGEMTLKTRKIGLGIMGL 409 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L L IPY S E +A E M+FI S +LA+E+GA+ ++ Sbjct: 410 HDLLIQLAIPYGSEEGRLLAAEVMQFIRDRCEEQSRKLAEEKGAFPAYDA---------- 459 Query: 724 DSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 I L R N+ +I PT T++ I + + Sbjct: 460 -EINLYPARR--------------------------NAALTSIQPTGTVSMIADCASGCE 492 Query: 784 PSYQNLYVKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + + +K M GD +VN +++ + + ++ + G++ IP+ + Sbjct: 493 PYFSIVMMKHVMDGDRLLMVNKHFEKIAREQGFYSDDLMVKVAES-GTVVGHAEIPEKWQ 551 Query: 843 KIHATAFEIDPMWLIESASRRQKW-IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTT 900 + TA +I P I + Q +D + S + L + + + + + Y + +G K Sbjct: 552 EAFRTAQDISPEDHIRMQAILQNSGVDSSISKTINLPKTATREDVKYSYISGYKLGCKGL 611 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 R S +T + + V++ Sbjct: 612 TVYRDGSRDDQVLNTTEQSRASEKSAMVSET 642 >gi|84516707|ref|ZP_01004066.1| ribonucleoside-diphosphate reductase, putative [Loktanella vestfoldensis SKA53] gi|84509743|gb|EAQ06201.1| ribonucleoside-diphosphate reductase, putative [Loktanella vestfoldensis SKA53] Length = 769 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 157/660 (23%), Positives = 259/660 (39%), Gaps = 88/660 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + + R+A LA E + + +FY+ L+ F ++ + Sbjct: 15 MKYRFKQADGTPIDISVEDTWHRIAKSLAAVEADPQAWEPKFYDALADFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGASVLGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMAVMRCDHPDIEAFITAK----SDAARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM V W L + +V++ Sbjct: 191 FNMSVLITDPFMAAVKAGGDWDLLF-----------------------------DGQVYK 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW ++ ++ P + F D N + + + ++N C E L Sbjct: 222 TLKARDLWDTIMQSTYDYAEPGVIFIDRINQMNNLNYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFDYDK-----LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ ++ D K L + TAVR++DNV+D + + + Sbjct: 278 ACLLGSINMARLVSDPFSDSAKLDANALTDLVATAVRMMDNVVDASRFPLPAQQHEAMNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S EA D M I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSEEAAAQTDAWMHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + + D++++ ++T G+RN+ +IAPT TI+ Sbjct: 398 DKY--------------------LASGAMQQMDDDVREAIRTHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D T +V+ + M DLK Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGTKTEEEVVD-------YAVQMWRDLKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L A + P+ + + QKWID + S + + S +Y Sbjct: 485 -----DAPLPDYFVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFDAFKEVYMA 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL---NAVPVTDPNSSTHSLGIPSSCTSDT 948 AW G K R T S + L N DP S + Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLSVSEEKPQLLISENTPAGGDPEGSHGTTPGGEVIYMSE 599 >gi|114765474|ref|ZP_01444584.1| ribonucleoside-diphosphate reductase, putative [Pelagibaca bermudensis HTCC2601] gi|114542184|gb|EAU45215.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp. HTCC2601] Length = 762 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 156/645 (24%), Positives = 262/645 (40%), Gaps = 85/645 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + + R+A LA E + E+ F+ L F ++ + Sbjct: 15 MKYRFKEADGTPIDMSVEDSWRRIARSLASVEKDAERWEETFFEALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA +HG Sbjct: 75 AGTARSVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAIVHGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIAAK----SDSARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV+ Sbjct: 191 FNLSVLVTDPFMEAVKADGSWDLKF-----------------------------DGKVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVKARDLWNKIMKATYDYAEPGVIFIDRINEANNLNYVEQIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFDYDK-----LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL + D + L + + TAVR++DNV+D + + + ++ Sbjct: 278 ACLLGSINLARLVTDPFTDAAEIDDAALETLVATAVRMMDNVVDASRFPLPEQEEEAQNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL + + Y S EA ++ + I+ + ASVELA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMKGLRYGSEEAAAQTEDWLHRIARASYLASVELAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +++++ ++T G+RN+ +IAPT TI+ Sbjct: 398 EKYLASGNM--------------------MNMDEDVREAIRTHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D T +V+ + M DLK Sbjct: 438 LYAGNVSSGIEPVFAYAYKRKVLQKDGTRTEEEVVD-------YAVQMWRDLKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A +DP + + QKWID + S + + S + +Y Q Sbjct: 485 -----DAELPDYFVNAQTLDPQDHVRMQAAAQKWIDSSISKTINCPEDISFEAFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 A+ G K R T S + AV + Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEEKKAAPEAVATPAAEPNQP 584 >gi|221105132|ref|XP_002165620.1| PREDICTED: similar to ribonucleotide-diphosphate reductase large subunit, putative, partial [Hydra magnipapillata] Length = 416 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 143/392 (36%), Positives = 208/392 (53%), Gaps = 12/392 (3%) Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 R+I A LWR +L ETG P+I +KD NI+S Q+++G + SSNLC EI S Sbjct: 1 YVRQIKARDLWRHILEAQSETGFPYILYKDNSNIKSNQKNLGTIRSSNLCAEIIQYSDEH 60 Query: 596 ETAVCNLGSINLLAHFANNQ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 ETAVCNL SI L N +++DKL R AVR LD +ID N + EK K+SN Sbjct: 61 ETAVCNLASICLPMFIETNNNVKIYNFDKLGKVCRVAVRNLDKIIDRNYYPTEKTKRSNL 120 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 HR +G+G G +++ +++ A E+ + E I F I S ELA++ G YS+F Sbjct: 121 RHRPMGIGAQGLADVYNIMGFGFSTHSAYELNKKIFETIYFACIDESKELAKKFGQYSTF 180 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 KGS QG W L VK G+RNS A+ PTA+ Sbjct: 181 KGSPASQGQLQFHMW-------GFNEDQLLMGFDWKTLISEVKKYGLRNSLLTALMPTAS 233 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I G S+ I+P N++ +S ++G+F V+N L+ +L +LW++ M + +GS+ Sbjct: 234 TSQIMGNSECIEPYMSNIFKRSTLAGEFIVINKHLMKDLIHLNLWNDDMRKRIIIENGSV 293 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQ 891 NIE IP+ LK ++ TAFE M ++ ++ R +IDQ+QSLNL++ EP L + Sbjct: 294 QNIELIPEKLKNVYETAFETKQMHIVRQSADRGIFIDQSQSLNLFMAEPDFDVLTSALFE 353 Query: 892 AWLMGLKT-TYYLRSRSATSVEKSTLKGVDGK 922 + +G KT YY RS A + + D K Sbjct: 354 SHDIGNKTGMYYYRSLPAINPISFGIDIEDIK 385 >gi|126463986|ref|YP_001045099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides ATCC 17029] gi|126105797|gb|ABN78327.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides ATCC 17029] Length = 755 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 152/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + R+A LA E + FY+ L F F+ + +GT L +CF+ Sbjct: 30 SVEDTWRRIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD + GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F++ +K D R N + + D FM+ V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L KV+R + A LW +++ Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + + + ++N C E L C LGS+NL A Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292 Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D +L +R AVR++DNV+D + + + + R IGLG+ G AL Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 ++ + Y S EA + M+ I+ A AS +LA+E+GA+ F+ + Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 + + ++++ ++T G+RN+ +IAPT TI+ G S I+P + Sbjct: 401 --------LASGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + LW E M L Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ + + QKWID + S + + ++ +Y AW G K R Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945 T S + P T L P++ Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596 >gi|77465546|ref|YP_355049.1| ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1] gi|77389964|gb|ABA81148.1| Ribonucleotide reductase [Rhodobacter sphaeroides 2.4.1] Length = 755 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 153/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + R+A LA E E FY+ L F F+ + +GT L +CF+ Sbjct: 30 SVEDTWRRIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD + GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F++ +K D R N + + D FM+ V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L KV+R + A LW +++ Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + + + ++N C E L C LGS+NL A Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292 Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D +L +R AVR++DNV+D + + + + R IGLG+ G AL Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 ++ + Y S EA + M+ I+ A AS +LA+E+GA+ F+ + Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 + + ++++ ++T G+RN+ +IAPT TI+ G S I+P + Sbjct: 401 --------LGSGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + LW E M L Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ + + QKWID + S + + ++ +Y AW G K R Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945 T S + P T L P++ Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596 >gi|221369551|ref|YP_002520647.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides KD131] gi|221162603|gb|ACM03574.1| Ribonucleoside-diphosphate reductase [Rhodobacter sphaeroides KD131] Length = 755 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + R+A LA E + FY+ L F F+ + +GT L +CF+ Sbjct: 30 SVEDTWRRIARALAEVEADPALWEDRFYSALEDFRFLPAGRITAGAGTGRTVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD + GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F++ +K D R N + + D FM+ V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L KV+R + A LW +++ Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + + + ++N C E L C LGS+NL A Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292 Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D +L +R AVR++DNV+D + + + + R IGLG+ G AL Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 ++ + Y S EA + M+ I+ A AS +LA+E+GA+ F+ + Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 + + ++++ +++ G+RN+ +IAPT TI+ G S I+P + Sbjct: 401 --------LASGSLTHMDEDVRAAIRSHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + LW E M L Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ + + QKWID + S + + ++ +Y AW G K R Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945 T S + P T L P++ Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596 >gi|56698026|ref|YP_168397.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi DSS-3] gi|56679763|gb|AAV96429.1| ribonucleoside-diphosphate reductase, putative [Ruegeria pomeroyi DSS-3] Length = 760 Score = 344 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 154/657 (23%), Positives = 263/657 (40%), Gaps = 85/657 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I + + + R+A LA E + ++ EFY L F ++ + Sbjct: 15 MKYRFKQADGTPIDQTVEDSWRRIARDLARVEQDPDRWEREFYTALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIGAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV+ Sbjct: 191 FNMSVLVTDAFMEAVKADGSWELQF-----------------------------DGKVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL +N D + L + TAVR++DNV+D + + + Sbjct: 278 ACLLGSVNLARLVSNPFEDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA + ++ + I+ A ASVELA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + T R +++++ ++T G+RN+ +IAPT TI+ Sbjct: 398 EKY--------------------LASGTMRAMDEDVREAIRTHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + M D Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRD--------- 481 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + L A + P + + QKWID + S + + S +Y Q Sbjct: 482 --KFADAPLPDYFVNAQTLAPADHVRMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW +G K R T + + D + + S Sbjct: 540 AWDLGCKGCTTYRPNDVTGSVLTVSESADKAPGESASAPHGTEGGDVIYMSEPLDRP 596 >gi|254467219|ref|ZP_05080630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacterales bacterium Y4I] gi|206688127|gb|EDZ48609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacterales bacterium Y4I] Length = 765 Score = 344 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 150/657 (22%), Positives = 254/657 (38%), Gaps = 84/657 (12%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + + R+A LA E + + +FY L F ++ + Sbjct: 15 MKYRFKQADGAPIDVTVEDTWRRIARDLARAEKKPDAWEEKFYAALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTIPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEHFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV+ Sbjct: 191 FNMSVLVTDDFMEAVKADGSWELQF-----------------------------DGKVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + ++ + ++N C E L Sbjct: 222 TVEARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ + D + + TAVR++DNV+D++ ++ + Sbjct: 278 ACLLGSINMARLVANPFEKDAHLDQAAMQELVATAVRMMDNVVDVSKFPLDAQAEEAKNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA DE + I+ A ASVELA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLEYGSDEAARQTDEWLHAIARAAYLASVELAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + ++ ++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 EKYLNSGNMLN--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + L++ E + Y Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKV---------------LQKDGSRTEE--EVVDYAVQMYR 480 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L A + P ++ + QKWID + S + + S +Y Q Sbjct: 481 EKFGADAKLPDYFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQ 540 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW G K R T + + D S G S+ Sbjct: 541 AWDQGCKGCTTYRPNDVTGSVLTVSESADTAPGETAKAPHESDMGENGAEVVYMSEP 597 >gi|9629309|ref|NP_044509.1| ribonucleotide reductase subunit 1 [Human herpesvirus 2] gi|82013519|sp|P89462|RIR1_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=ICP10; AltName: Full=Ribonucleotide reductase 136 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|1869862|emb|CAB06725.1| ribonucleotide reductase large subunit [Human herpesvirus 2] Length = 1142 Score = 344 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 291/725 (40%), Gaps = 65/725 (8%) Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + + T + E+ + R E + +L +++ +D Sbjct: 430 RILGVLVHLRIRTREASFEEWMRSKEVDLDFGLT-ERLREHEAQLMILAQALNPYD---- 484 Query: 282 ANDLKYERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVA--------MGLAL 330 L + GLQ Y G +E + R+A G+ Sbjct: 485 --CLIHSTPNTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRH 542 Query: 331 KETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF-- 384 ++ E F++ L + STP + N GTR+ SSC+L Sbjct: 543 IALGRQGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLR 602 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + + +GG+G ++P LKV + A N+ R Sbjct: 603 AITGNVSAILARNGGIGLCMQAFNDASPGTA-------SIMPALKVLDSLVAAHNKQSTR 655 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNA 497 C YLE WH DV L ++ ++ +R ++ +A W+PDLF KR+ +N Sbjct: 656 PTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNV 715 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF D L D +G+EFE YE+ E I L ++ TG Sbjct: 716 TWSLFDRDTSMSLADFHGEEFEKLYEHLEAMGFG------ETIPIQDLAYAIVRSAATTG 769 Query: 558 HPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 P+I FKD N G + SNLCTEI +S + VCNLGS+NL + F Sbjct: 770 SPFIMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVSRQTF 829 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ +L ++ V +++ +ID + + N R++G+G+ G +A + + S Sbjct: 830 DFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLES 889 Query: 677 PEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 E ++ E + A+ S L + +S FK S++ G F R Sbjct: 890 AEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHW--------ERFS 941 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A R W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K Sbjct: 942 NASPRYEGE-WEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTR 1000 Query: 796 SGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEI 851 G+ N+ L+ EL++ + L+ S+ + + P + TAF+ Sbjct: 1001 DGETLRPNTLLLKELERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDY 1060 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRS 905 D LI+ + R ++D +QS+ LY+ E L + A+ GLKT YY + Sbjct: 1061 DQELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKV 1120 Query: 906 RSATS 910 R AT+ Sbjct: 1121 RKATN 1125 >gi|254476564|ref|ZP_05089950.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ruegeria sp. R11] gi|214030807|gb|EEB71642.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Ruegeria sp. R11] Length = 766 Score = 343 bits (880), Expect = 8e-92, Method: Composition-based stats. Identities = 154/657 (23%), Positives = 255/657 (38%), Gaps = 84/657 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I + + + R+A LA E +++ F+N L F ++ + Sbjct: 15 MKYRFKQADGTPIDQTVEDSWRRIARDLARAEKDQDAWEETFFNALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV++ Sbjct: 191 FNMSVLVTDPFMEAVKADGSWELIF-----------------------------DGKVYQ 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVEQIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL N D + L + TAVR++DNV+D++ +E + Sbjct: 278 ACLLGSINLARLVKNPFEKESELDPEGLKELVATAVRMMDNVVDVSKFPLEAQAQEAQNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA +E + I+ A ASVELA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTEEWLHAIARAAYLASVELAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + ++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 EAYLASGNM--------------------MNMDEDVRDAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + L++ E + Y Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKV---------------LQKDGSRTEE--EVVDYAVQMYR 480 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P ++ + QKWID + S + + S +Y Q Sbjct: 481 EKFGADAELPDYFVNAQTLTPAEHVKMQAAAQKWIDSSISKTINCPEDISFDSFKDVYMQ 540 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW +G K R T S + D + G Sbjct: 541 AWDLGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHEADVSETGAAEVVYMSE 597 >gi|110681184|ref|YP_684191.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh 114] gi|109457300|gb|ABG33505.1| ribonucleotide reductase, putative [Roseobacter denitrificans OCh 114] Length = 832 Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats. Identities = 154/635 (24%), Positives = 257/635 (40%), Gaps = 85/635 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ ++ + + R+A LA E E +FY L F ++ + Sbjct: 15 MKYRFKAADGAPLDVTVEDTWRRIARDLARVEKTPEVWEEKFYAALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V + W L + KV+R Sbjct: 191 FNMSVLITDPFMEAVKADGPWDLVF-----------------------------DGKVYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + + + ++N C E L Sbjct: 222 TVQARDLWNRIMQATYDYAEPGVIFIDRINQANNLSYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL +N D L + TAVR++DNV+D + +E + Sbjct: 278 ACLLGSINLARLVSNPFEDTAALDEAALDDLVATAVRMMDNVVDASKFPLEAQAREAQAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S EA D + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMMGLRYGSDEAARQTDRWLHSIARAAYLASVDLAREKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + T + ++++ V+ G+RN+ +IAPT TI+ Sbjct: 398 DKY--------------------LASGTMQAMDEDVRDAVREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ LW E Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQLWREKFGDK--------- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P+ ++ + QKW+D + S + + +Y + Sbjct: 487 -------ELPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYME 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 AW G K R + T S + K +A Sbjct: 540 AWDSGCKGCTTYRPNAVTGSVLSVSEEKPSKQDAD 574 >gi|13358415|ref|NP_078756.1| Ribonucleotide reductase large subunit [Lymphocystis disease virus 1] Length = 547 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 156/587 (26%), Positives = 244/587 (41%), Gaps = 92/587 (15%) Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E + Y + F+ S+P L S + +CF+ V +++ I E L+ Sbjct: 37 DEILETKLYLYATKEWFIYSSPIL--SDSDDGLPIACFVMDVQNNIKDIIQHSVETKWLS 94 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 GG W + + S G IPFL + +A QG RKG+ AYL+ Sbjct: 95 INGGGCAGYWGQL-------KSPSDTSCGPIPFLHTIDADVLAYKQGSTRKGSYAAYLDI 147 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D+ EF+++R TGD R+ +++ + D FM V QN W L P Sbjct: 148 SHPDILEFINMRTPTGDLNRKNLNLHHGVNLTDAFMIAVEQNLNWNLIEPHTNQ------ 201 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP-- 572 + + AV LWR +L F TG P++ F D N Sbjct: 202 ---------------------IKETVPAVQLWRLLLETRFRTGEPYLNFIDTANRALHPG 240 Query: 573 -QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + + SSNLC EI L S + TAVC L S+NL + D + +++ Sbjct: 241 LKAKNLKIKSSNLCNEIHLASDEQRTAVCCLASLNLEKYEEWCDTD------LVECCIKM 294 Query: 632 LDNVIDINCHTIEKA----KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 L+NV+D S R+IGLG G+ L IP+ SP+A+ + Sbjct: 295 LNNVLDYFIFKAPIELSKAVYSATCERSIGLGATGWAYYLMKNDIPFDSPKALFLTKLIF 354 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 I A+ + LAQ G Sbjct: 355 GNIKIKAVKTTCLLAQRFGPAP-------------------------------------- 376 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +K +RN++ +AIAP + + I S SI+P N YV +G ++N +L Sbjct: 377 ----DLKAYNVRNAHLLAIAPNSNTSCILNTSPSIEPIAGNAYVHKTRAGTHLIINPYLK 432 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +L+ + E + + DGS+ ++ + + K + TA+EI+ + L+E A+ RQK+I Sbjct: 433 QKLRNYNQDTEETWNSIILKDGSVQHLTFLSHEEKAVFKTAYEINALVLVEQAAVRQKYI 492 Query: 868 DQAQSLNLYLDEPSGKK-LDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 Q QSLNL+ + +K L ++ AW +G K YYLR+ ++ S E Sbjct: 493 CQGQSLNLFFPLNTQRKLLHTVHFNAWKLGCKGLYYLRTSASKSSEN 539 >gi|255264072|ref|ZP_05343414.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thalassiobium sp. R2A62] gi|255106407|gb|EET49081.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thalassiobium sp. R2A62] Length = 757 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 151/643 (23%), Positives = 258/643 (40%), Gaps = 86/643 (13%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I + + + R+A LA E +FYN L F ++ + Sbjct: 15 MKYRFKDADGTPIDKTVEDTWTRIATSLASVEKTPSDWGEKFYNALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT+ L +CF+ TVPDD+ GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTKRSVTLFNCFVMGTVPDDMGGIFDHLREAALTMQQGGGIGYDFSTIRPKGAAVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + +V + Sbjct: 191 FNVSVLVTDPFMEAVKADQPWDLVF-----------------------------KGQVCK 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + AV LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVQAVDLWNKIMQSTYDYAEPGVIFIDRINKANNLGYVEEIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFDYDKLAST-----IRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ + D L + TAVR++DNV+D + ++ + Sbjct: 278 ACLLGSINMSRIVTDPFTDAAALDEAAMIDLVATAVRMMDNVVDASRFPLDAQRAEAQAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S +A ++ M I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSEDAARQTEQWMHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + D+++ ++T G+RN+ +IAPT TI+ Sbjct: 398 DKY--------------------LQSDAMMAMDDDVRDAIRTHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + K +E ++ I Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQ--------------KDGTRTEEEVVDYAVKLYRDIH 483 Query: 833 NIE-RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890 + +PD A + P+ + + QKWID + S + + S + +Y Sbjct: 484 GADAELPDH----FVNAQTLAPLDHVRMQAAAQKWIDSSISKTINCPEDISFEDFKEVYM 539 Query: 891 QAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 +AW G K R T S + + A Sbjct: 540 EAWDTGCKGCTTYRPNDVTGSVLSVSEDKPAPVVAQSDEADQD 582 >gi|260432613|ref|ZP_05786584.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Silicibacter lacuscaerulensis ITI-1157] gi|260416441|gb|EEX09700.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Silicibacter lacuscaerulensis ITI-1157] Length = 760 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 155/640 (24%), Positives = 259/640 (40%), Gaps = 86/640 (13%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I + + + R+A LA E + +FY L F ++ + Sbjct: 15 MKYRFKKADGTPIDQTVEDTWRRIARDLARVEKDPAHWEQKFYEALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA +HG Sbjct: 75 AGTARQVTLFNCFVMGTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVHGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V +A W L + KV+ Sbjct: 191 FNMSVLVTDAFMEAVKADASWDLVF-----------------------------DGKVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + + + ++N C E L Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINQANNLSYAETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL + D L + TAVR++DNV+D + + + Sbjct: 278 ACLLGSINLARLVSAPFEDAAQLDEAALQELVATAVRMMDNVVDASKFPLPQQAAEAQAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA + + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + T + D++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 EKY--------------------LASGTMQQMDDDVREAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + M D G + Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRD---KFGDV- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P ++ + QKWID + S + + S +Y Q Sbjct: 487 -------ELPDYFVNAQTLTPAEHVKMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 AW G K R T T+ D K+ P Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVL-TVSESDDKVPGESADAP 578 >gi|294676157|ref|YP_003576772.1| ribonucleoside-diphosphate reductase NrdJ [Rhodobacter capsulatus SB 1003] gi|294474977|gb|ADE84365.1| ribonucleoside-diphosphate reductase NrdJ-1 (adenosylcobalamin-dependen) [Rhodobacter capsulatus SB 1003] Length = 755 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 150/639 (23%), Positives = 257/639 (40%), Gaps = 84/639 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + RVA LA E + +FY L F F+ + L +GT L +CF+ Sbjct: 30 SVEDSWRRVARDLASVEADPAHWEPKFYAALEDFKFLPAGRILAGAGTGRAVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+PD + GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAAVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F+ ++ D R N + I D FM+ V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIEAFITAKQ----DSARLRMFNLSVLITDAFMEAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L + KV+ ++A LW K++ Sbjct: 206 KADGPWELVF-----------------------------DGKVYHTLNARDLWNKIMRAT 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---- 609 ++ P + F D N + ++ + ++N C E L C LGS+NL Sbjct: 237 YDFAEPGVIFIDRINAMNNLAYLEQIAATNPCGEQPLPPY----GACLLGSVNLARLVTA 292 Query: 610 -HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + D L +RT+VR++DNV+D + + + + R IGLG+ G AL Sbjct: 293 PFTDQARLDLAALDELVRTSVRMMDNVVDASRFPLPQQQAEAANKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y +A + M+ I+ A ASV+LA+E+GA+ F + + Sbjct: 353 MLGLRYGDDKAAAQTEAWMKAIARAAYLASVDLAREKGAFPLFDAEKYLSSGNMLQ---- 408 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 +++++ + T G+RN+ +IAPT TI+ G S I+P + Sbjct: 409 ----------------MDEDVRQAIATHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + LW + G + L Sbjct: 453 YAYTRKVLQKDGSRTEEEVVDYAVK--LWRDM--------KGDVA--------LPAYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + PM ++ + QKWID + S + + S +Y A+ G K R Sbjct: 495 AQTLAPMDHVKMQAAAQKWIDSSISKTINCPVDISFDDFKDVYMAAFESGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 T + + + + T L P+S Sbjct: 555 DVTGSVLTVSEKSEKTPETDKGAEVVYLTEPLDRPASLE 593 >gi|149201158|ref|ZP_01878133.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp. TM1035] gi|149145491|gb|EDM33517.1| ribonucleoside-diphosphate reductase, putative [Roseovarius sp. TM1035] Length = 762 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 157/662 (23%), Positives = 262/662 (39%), Gaps = 84/662 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 QI +Y + + + R+A LA+ E E FY+ L F F+ + Sbjct: 15 QIWNMKYRFRNGDAGDASVEDSWRRIARALAVAEAEPALWEERFYHALEDFKFLPAGRIT 74 Query: 359 FNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 +GT L +CF+ TVPDD+ GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGAGTARKVTLFNCFVMGTVPDDMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAEVKG 134 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 + + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 VSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPARL 190 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 N + I D FM+ V + W L KV Sbjct: 191 RMFNLSVLITDAFMEAVKADGPWDLQFG-----------------------------GKV 221 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 + + A LW +++ ++ P + F D N + + + ++N C E L Sbjct: 222 YHTVQARDLWNRIMQATYDYAEPGVIFIDRINAANNLAYCETIAATNPCGEQPLPPY--- 278 Query: 597 TAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 C LGSINL A D L +R AVR++DNV+D++ + Sbjct: 279 -GACLLGSINLARLVAEPFAAGARVDEAALDDLVRVAVRMMDNVVDVSGFPLPAQAAEAQ 337 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R IGLG+ G AL ++ + Y S AV+ + + I+ A ASV+LA+E+GA+ F Sbjct: 338 AKRRIGLGVTGLADALLMVGLRYGSDAAVQQTEAWLHAIARAAYLASVDLAREKGAFPLF 397 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 RD + T + +++ V G+RN+ +IAPT T Sbjct: 398 --------------------DRDAYLASGTMQTMDADVRAAVAEHGIRNALLTSIAPTGT 437 Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ G S I+P + Y + + D + +++ +W + M Sbjct: 438 ISLYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVID--YAVQMWRDRMGD-------- 487 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 +P+ A + P ++ + QKW+D + S + + S + +Y Sbjct: 488 ----APLPEH----FVNAQTLPPEDHVKMQAAAQKWVDSSISKTINCPEDISFEAFKNVY 539 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 QAW +G K R + T S + D P + + + E Sbjct: 540 LQAWDLGCKGCTTYRPNAVTGSVLSVSETTDKAPGETRGDVPATGGEVVYMSEPLDRPKE 599 Query: 950 CE 951 E Sbjct: 600 LE 601 >gi|332561218|ref|ZP_08415536.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides WS8N] gi|332275016|gb|EGJ20332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sphaeroides WS8N] Length = 755 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 152/642 (23%), Positives = 256/642 (39%), Gaps = 87/642 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + R+A LA E E FY+ L F F+ + +G+ L +CF+ Sbjct: 30 SVEDTWRRIARALAEVEAEPALWEDRFYSALEDFRFLPAGRITAGAGSGRTVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 TVPD + GIF AL+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTVPDSMAGIFDALKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F++ +K D R N + + D FM+ V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDIESFIEAKK----DPARLRMFNLSVLVTDAFMEAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L KV+R + A LW +++ Sbjct: 206 KADGPWELTFG-----------------------------GKVYRTLQARDLWNRIMRST 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + + + ++N C E L C LGS+NL A Sbjct: 237 YDFAEPGVIFIDRINQMNNLAYCETISATNPCGEQPLPPY----GACLLGSVNLARLVAK 292 Query: 614 NQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D +L +R AVR++DNV+D + + + + R IGLG+ G AL Sbjct: 293 PFSDGAELDLAELDELVRLAVRMMDNVVDASRFPLPEQAREAQMKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 ++ + Y S EA + M+ I+ A AS +LA+E+GA+ F+ + Sbjct: 353 MVGLRYGSEEAAARTEAWMKAIARSAYLASADLAREKGAFPLFEADKY------------ 400 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 + + ++++ ++T G+RN+ +IAPT TI+ G S I+P + Sbjct: 401 --------LGSGSLTHMDEDVRAAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + LW E M L Sbjct: 453 YAYKRKVLQKDGSRTEEEVVDYAVR--LWREQMGD----------------APLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ + + QKWID + S + + ++ +Y AW G K R Sbjct: 495 AQTLAPLEHVRMQAAAQKWIDSSISKTINCPEDIGFEEFADVYLAAWDQGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSS---THSLGIPSSCT 945 T S + P T L P++ Sbjct: 555 EVTGSVLSVSEAGQAAPAEAPEPKGGEVVYLTDPLDRPAALE 596 >gi|302391884|ref|YP_003827704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetohalobium arabaticum DSM 5501] gi|302203961|gb|ADL12639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acetohalobium arabaticum DSM 5501] Length = 749 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 169/654 (25%), Positives = 285/654 (43%), Gaps = 87/654 (13%) Query: 300 ILYDRYFLHINGS-RIEMPQAFFMRVAMGLALKETEKEKRAVEFY---NLLSSFHFMCST 355 +L DRY +E P+ F+RVA +A E ++EK+ NL++ F F+ ++ Sbjct: 12 LLEDRYLKRNEKREIVETPEELFIRVAENIAAAEEDEEKQEYYEEEFYNLMTDFKFLPNS 71 Query: 356 PTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 PTL N+GT QL++CF+ V D + GIF A++ A++ K GG G ++ +R + Sbjct: 72 PTLMNAGTELQQLAACFVLPVEDSMEGIFTAVRNAALIHKSGGGTGFAFSRLRPKDDVVK 131 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 T G S G + F+KV N V QGGKR+GA L H D+ +F+ + D + Sbjct: 132 STGGVSSGPLSFMKVFNSATNTVKQGGKRRGANMGMLRVDHPDILDFIHAKGELNDKNQE 191 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG------KEFEIAYENYE--R 527 +D + + D ++ + + + D + EF A +N E Sbjct: 192 LYDEFKES-LEDTYLAPEVIDKKLKQYKQKLLDDQFSNFNLSVGVTDEFMEAVKNDENYE 250 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + +V ++ A ++ ++ ++ G P + F D N ++P ++G + ++N C E Sbjct: 251 LINPRTGQVVGELDARKVFNLIVKYAWKNGEPGLVFLDEINHKNPVPNLGEIEATNPCGE 310 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 L + CNLGSINL + D+++L TI AVR LDNVID+N + ++K + Sbjct: 311 QPLLPN----EACNLGSINLSKFVDDGTVDWEELKETIDLAVRFLDNVIDMNNYPLDKIE 366 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IGLG+MGF L L I Y S EAVE+A + M+FI+ HA S +LA+E+GA Sbjct: 367 EQVMKARKIGLGVMGFHEMLIKLGIAYNSDEAVEMAKKVMKFINEHAHQYSQKLAEEKGA 426 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + +++ S + RN+ IA Sbjct: 427 FPAWEESKYKTPK--------------------------------------RNATLTTIA 448 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ + G S I+P + Y ++ G Sbjct: 449 PTGSISFLAGTSGGIEPFFDFSYTHTDGDG------------------------------ 478 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + S + + +++ T +I P W I+ + Q ++D A S + L + + + Sbjct: 479 NTSRFEYDFTSEAEEEVLVTTMDIAPEWHIKIQAAFQNYVDNAVSKTINLPNTATKEDIR 538 Query: 887 FIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 Y A+ + K R S + V KS+ + L + + G Sbjct: 539 EAYILAYELNCKGLTVYRDGSRESQVLKSSDDKKEETLRTDKIYPRTRPLIADG 592 >gi|254487728|ref|ZP_05100933.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Roseobacter sp. GAI101] gi|214044597|gb|EEB85235.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Roseobacter sp. GAI101] Length = 760 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 156/643 (24%), Positives = 252/643 (39%), Gaps = 84/643 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + R+A LA E E F+ L F F+ + SGT L +CF+ Sbjct: 30 TVEDTWRRIARDLAQTEDAPEVWEETFFEALEDFKFLPAGRITAGSGTARRVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+PD + GIF L+E A+ + GG+G D++ +R GA + G + + G + F+ V + Sbjct: 90 GTIPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVLGVSADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H DVE+F+ + D R N + I D FM V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRMFNMSVLITDPFMDAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L KV+R + A LW +++ Sbjct: 206 KADQSWDLQFG-----------------------------GKVYRTVQARDLWNRIMKAT 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--- 610 +E P + F D N + + + ++N C E L C LGSIN+ Sbjct: 237 YEFAEPGVIFIDRINAANNLSYCETIAATNPCGEQPLPPY----GACLLGSINMARMVAD 292 Query: 611 --FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D L + TAVR++DNV+D++ +E K R IGLG+ G AL Sbjct: 293 PFDKTAHLDVVALDKLVATAVRMMDNVVDVSKFPLEAQKAEAKAKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 ++ + Y S EA + ++ I+ A ASV+LA+E+GA+ F + Sbjct: 353 MVGLRYGSDEAAAQTEAWLKAIARAAYLASVDLAKEKGAFPLFDADAY------------ 400 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 + T + ++++ +K G+RN+ +IAPT TI+ G S I+P + Sbjct: 401 --------LASGTMQQMDEDVRSEIKEHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + M DLK L Sbjct: 453 YAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLKG-----------DAPLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ ++ + QKW+D + S + + S +Y AW G K R Sbjct: 495 AQTLAPLDHVKMQAAAQKWVDSSISKTINCPEDISFDAFKDVYMAAWDQGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 T S + D V S + S E Sbjct: 555 DVTGSVLSVSETTDNAPGEVAPEPMPSEGGEVVYMSEPLDRPE 597 >gi|126737397|ref|ZP_01753132.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. SK209-2-6] gi|126721982|gb|EBA18685.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. SK209-2-6] Length = 765 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 155/657 (23%), Positives = 261/657 (39%), Gaps = 84/657 (12%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + + R+A LA E + E +FY L F ++ + Sbjct: 15 MKYRFKQADGTPIDVTVEDSWRRIARDLARAEQDPEAWEGKFYEALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L KV+ Sbjct: 191 FNMSVLVTDDFMEAVKADGSWELQFG-----------------------------GKVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVEARDLWNKIMQATYDFAEPGVIFIDRINKANNLSYVEDICATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ +N + + + + TAVR++DNV+D++ +E + Sbjct: 278 ACLLGSINMARLVSNPFEKNAGLNQEAMQELVATAVRMMDNVVDVSKFPLEAQAQEAQNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA DE + I+ A ASVELA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLEYGSDEAARQTDEWLHGIARAAYLASVELAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + ++ +++++ ++T G+RN+ +IAPT TI+ Sbjct: 398 DAYLASGNMLN--------------------MDEDVREAIRTHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + L++ E + Y Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKV---------------LQKDGSRTEE--EVVDYAVQMYR 480 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L A + P ++ + QKWID + S + + S +Y Q Sbjct: 481 EKFGADAKLPGFFVNAQTLSPAAHVKMQAAAQKWIDSSISKTINCPEDISFDDFKDVYMQ 540 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW G K R T + + D +S + + G S+ Sbjct: 541 AWDQGCKGCTTYRPNDVTGSVLTVSENADTAPGETAQAPHDSGSDANGAEVVYMSEP 597 >gi|254511074|ref|ZP_05123141.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacteraceae bacterium KLH11] gi|221534785|gb|EEE37773.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacteraceae bacterium KLH11] Length = 760 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 148/657 (22%), Positives = 253/657 (38%), Gaps = 85/657 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I + + + R+A LA E + +FY L F ++ + Sbjct: 15 MKYRFKQADGTPIDQTVEDSWRRIARDLARVEDDPAHWEEKFYAALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFITAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV++ Sbjct: 191 FNMSVLVTDPFMEAVKADGPWELVF-----------------------------DGKVYQ 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLSYVETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL D L + TAVR++DNV+D + + + + Sbjct: 278 ACLLGSVNLARLVAEPFEDAAHLDEAALQELVATAVRMMDNVVDASKFPLAEQEAEAQDK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA + + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAARQTERWLHAIARAAYLASVDLAKEKGAFPLFAA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + ++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 EKYLASGTMLQ--------------------MDEDVRDAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ +W + Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWRDKFADK--------- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P ++ + QKWID + S + + S +Y Q Sbjct: 487 -------ELPDYFVNAQTLSPSDHVKMQAAAQKWIDSSISKTINCPEDISFDAFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW G K R T + + D + S Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLTVSESADTAPGESADAPQEIDGGDVIYMSEPLDRP 596 >gi|1710385|sp|P09853|RIR1_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase 136 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|330199|gb|AAA45806.1| ribonucleotide reductase large subunit [Human herpesvirus 2] Length = 1144 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 290/725 (40%), Gaps = 65/725 (8%) Query: 222 RFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYL 281 R L + + T + E+ + R E + +L +++ +D Sbjct: 432 RILGILVHLRIRTREASFEEWMRSKEVDLDFGLT-ERLREHEAQLMILAQALNPYD---- 486 Query: 282 ANDLKYERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVA--------MGLAL 330 L + GLQ Y G +E + R+A G+ Sbjct: 487 --CLIHSTPNTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRH 544 Query: 331 KETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF-- 384 ++ E F++ L + STP + N GTR+ SSC+L Sbjct: 545 IALGRQGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLR 604 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 + + +GG+G ++P LKV + A N+ R Sbjct: 605 AITGNVSAILARNGGIGLCMQAFNDASPGTA-------SIMPALKVLDSLVAAHNKQSTR 657 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNA 497 C YLE WH DV L ++ ++ +R ++ +A W+PDLF KR+ +N Sbjct: 658 PTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNV 717 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W+LF D L D +G+EFE YE+ E I L ++ TG Sbjct: 718 TWSLFDRDTSMSLADFHGEEFEKLYEHLEAMGFG------ETIPIQDLAYAIVRSAATTG 771 Query: 558 HPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 P+I FKD N G + SNLCTEI SS + VCNLGS+NL + F Sbjct: 772 SPFIMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCVSRRTF 831 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+ L ++ V +++ +ID + + + R++G+G+ G +A + + S Sbjct: 832 DFGMLRDAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLES 891 Query: 677 PEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 E ++ E + A+ S L + +S FK S++ G F R Sbjct: 892 AEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHW--------ERFS 943 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A R W+ L++ + G+RNS +A+ PTA A I VS+ P + NL+ K Sbjct: 944 NASPRYEGE-WEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTR 1002 Query: 796 SGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEI 851 G+ N+ L+ EL++ + L+ S+ + + P + TAF+ Sbjct: 1003 DGETLRPNTLLLKELERTFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDY 1062 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRS 905 D LI+ + R ++D +QS+ LY+ E L + A+ GLKT YY + Sbjct: 1063 DQELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKV 1122 Query: 906 RSATS 910 R AT+ Sbjct: 1123 RKATN 1127 >gi|290766060|gb|ADD60038.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] Length = 1137 Score = 341 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%) Query: 274 MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324 + LV LA L + GLQ Y G +E + R+ Sbjct: 464 HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523 Query: 325 A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 A G+ +E E F++ L + STP + N GTR+ SSC+ Sbjct: 524 AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583 Query: 373 LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L + + +GG+G + V+P LKV Sbjct: 584 LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489 + A N+ R C YLE WH DV L ++ ++ +R ++ +A W+PDLF Sbjct: 637 LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696 Query: 490 MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 KR+ +N WTLF D L D +G+EFE Y++ E +I Sbjct: 697 FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602 L ++ TG P++ FKD N G + SNLCTEI +S + VCNL Sbjct: 751 ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL + FD+ +L ++ V +++ +ID + + N R++G+G+ G Sbjct: 811 GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721 +A L + S E ++ E + A+ S L + ++ FK S++ G F Sbjct: 871 LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + R W+ L++ + G+RNS +A+ PTA A I VS+ Sbjct: 931 ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837 P + NL+ K G+ N+ L+ EL++ ++ L S+ + + Sbjct: 982 FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892 P + TAF+ D LI+ + R ++D +QS+ LY+ E L + A Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101 Query: 893 WLMGLKT-TYYLRSRSATS 910 + GLKT YY + R AT+ Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120 >gi|114318827|gb|ABI63501.1| UL39 [Human herpesvirus 1] gi|290766138|gb|ADD60115.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] Length = 1137 Score = 341 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%) Query: 274 MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324 + LV LA L + GLQ Y G +E + R+ Sbjct: 464 HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523 Query: 325 A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 A G+ +E E F++ L + STP + N GTR+ SSC+ Sbjct: 524 AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583 Query: 373 LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L + + +GG+G + V+P LKV Sbjct: 584 LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489 + A N+ R C YLE WH DV L ++ ++ +R ++ +A W+PDLF Sbjct: 637 LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696 Query: 490 MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 KR+ +N WTLF D L D +G+EFE Y++ E +I Sbjct: 697 FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602 L ++ TG P++ FKD N G + SNLCTEI +S + VCNL Sbjct: 751 ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL + FD+ +L ++ V +++ +ID + + N R++G+G+ G Sbjct: 811 GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721 +A L + S E ++ E + A+ S L + ++ FK S++ G F Sbjct: 871 LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + R W+ L++ + G+RNS +A+ PTA A I VS+ Sbjct: 931 ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837 P + NL+ K G+ N+ L+ EL++ ++ L S+ + + Sbjct: 982 FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892 P + TAF+ D LI+ + R ++D +QS+ LY+ E L + A Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101 Query: 893 WLMGLKT-TYYLRSRSATS 910 + GLKT YY + R AT+ Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120 >gi|330196|gb|AAA45805.1| ribonucleotide reductase 1 [Human herpesvirus 1] Length = 1137 Score = 341 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%) Query: 274 MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324 + LV LA L + GLQ Y G +E + R+ Sbjct: 464 HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523 Query: 325 A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 A G+ +E E F++ L + STP + N GTR+ SSC+ Sbjct: 524 AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583 Query: 373 LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L + + +GG+G + V+P LKV Sbjct: 584 LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489 + A N+ R C YLE WH DV L ++ ++ +R ++ +A W+PDLF Sbjct: 637 LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696 Query: 490 MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 KR+ +N WTLF D L D +G+EFE Y++ E +I Sbjct: 697 FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602 L ++ TG P++ FKD N G + SNLCTEI +S + VCNL Sbjct: 751 ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL + FD+ +L ++ V +++ +ID + + N R++G+G+ G Sbjct: 811 GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721 +A L + S E ++ E + A+ S L + ++ FK S++ G F Sbjct: 871 LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + R W+ L++ + G+RNS +A+ PTA A I VS+ Sbjct: 931 ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837 P + NL+ K G+ N+ L+ EL++ ++ L S+ + + Sbjct: 982 FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVPQALPCLE 1041 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892 P + TAF+ D LI+ + R ++D +QS+ LY+ E L + A Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101 Query: 893 WLMGLKT-TYYLRSRSATS 910 + GLKT YY + R AT+ Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120 >gi|9629420|ref|NP_044641.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] gi|132605|sp|P08543|RIR1_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=ICP6; AltName: Full=Ribonucleotide reductase 136 kDa subunit; AltName: Full=Ribonucleotide reductase large subunit gi|59539|emb|CAA32314.1| ribonucleotide reductase large subunit [Human herpesvirus 1] Length = 1137 Score = 341 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%) Query: 274 MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324 + LV LA L + GLQ Y G +E + R+ Sbjct: 464 HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523 Query: 325 A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 A G+ +E E F++ L + STP + N GTR+ SSC+ Sbjct: 524 AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583 Query: 373 LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L + + +GG+G + V+P LKV Sbjct: 584 LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489 + A N+ R C YLE WH DV L ++ ++ +R ++ +A W+PDLF Sbjct: 637 LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696 Query: 490 MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 KR+ +N WTLF D L D +G+EFE Y++ E +I Sbjct: 697 FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602 L ++ TG P++ FKD N G + SNLCTEI +S + VCNL Sbjct: 751 ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL + FD+ +L ++ V +++ +ID + + N R++G+G+ G Sbjct: 811 GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721 +A L + S E ++ E + A+ S L + ++ FK S++ G F Sbjct: 871 LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + R W+ L++ + G+RNS +A+ PTA A I VS+ Sbjct: 931 ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837 P + NL+ K G+ N+ L+ EL++ ++ L S+ + + Sbjct: 982 FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892 P + TAF+ D LI+ + R ++D +QS+ LY+ E L + A Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101 Query: 893 WLMGLKT-TYYLRSRSATS 910 + GLKT YY + R AT+ Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120 >gi|222478370|gb|ACM62262.1| ribonucleotide reductase subunit 1 [Human herpesvirus 1] gi|225644|prf||1308225A ribonucleotide reductase Length = 1137 Score = 341 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 173/679 (25%), Positives = 278/679 (40%), Gaps = 64/679 (9%) Query: 274 MDFDLVYLANDLKY------ERDFAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRV 324 + LV LA L + GLQ Y G +E + R+ Sbjct: 464 HEAQLVILAQALDHYDCLIHSTPHTLVERGLQSALKYEEFYLKRFGGHYMESVFQMYTRI 523 Query: 325 A--------MGLALKETEKEKRAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCF 372 A G+ +E E F++ L + STP + N GTR+ SSC+ Sbjct: 524 AGFLACRATRGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCY 583 Query: 373 LTTVPDDLYGIF--GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 L + + +GG+G + V+P LKV Sbjct: 584 LVNPQATTNKATLRAITSNVSAILARNGGIGLCVQAFNDS-------GPGTASVMPALKV 636 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLF 489 + A N+ R C YLE WH DV L ++ ++ +R ++ +A W+PDLF Sbjct: 637 LDSLVAAHNKESARPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLF 696 Query: 490 MKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 KR+ +N WTLF D L D +G+EFE Y++ E +I Sbjct: 697 FKRLIRHLDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFG------EQIPIQ 750 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNL 602 L ++ TG P++ FKD N G + SNLCTEI +S + VCNL Sbjct: 751 ELAYGIVRSAATTGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNL 810 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+NL + FD+ +L ++ V +++ +ID + + N R++G+G+ G Sbjct: 811 GSVNLARCVSRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQG 870 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA-QERGAYSSFKGSLWDQGVF 721 +A L + S E ++ E + A+ S L + ++ FK S++ G F Sbjct: 871 LHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRF 930 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 + R W+ L++ + G+RNS +A+ PTA A I VS+ Sbjct: 931 ---HWERFPDARPRYE------GEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEG 981 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI- 837 P + NL+ K G+ N+ L+ EL++ ++ L S+ + + Sbjct: 982 FAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLE 1041 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFIYRQA 892 P + TAF+ D LI+ + R ++D +QS+ LY+ E L + A Sbjct: 1042 PTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHA 1101 Query: 893 WLMGLKT-TYYLRSRSATS 910 + GLKT YY + R AT+ Sbjct: 1102 YKRGLKTGMYYCKVRKATN 1120 >gi|295134783|ref|YP_003585459.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia profunda SM-A87] gi|294982798|gb|ADF53263.1| ribonucleotide-diphosphate reductase subunit alpha [Zunongwangia profunda SM-A87] Length = 564 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 178/641 (27%), Positives = 271/641 (42%), Gaps = 112/641 (17%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 +A++ K +R + QIL Y L E ++ R+A A + + E A Sbjct: 11 IADEPKNKRLWWLNDESQQILNRGYLLKG-----ETVKSAIERIANASAKRLYKPEL-AE 64 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 F ++ S+P N GT SCF VPD++ GI L E M K GG Sbjct: 65 AFIEMIERGWMSLSSPIWANMGTERGLPISCFNVYVPDNIEGITHKLGEVIMQTKIGGGT 124 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + +RG G+ + NGKS G F+K+ + ++QGG R+GA AYL+ H D++ Sbjct: 125 SGYFGELRGRGSAVTD-NGKSSGATSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIK 183 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFL+++ ++ +PD +M+ + + Sbjct: 184 EFLEIKNIG----NPIQNLFYGVCVPDYWMQEMIEGD----------------------- 216 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-- 578 + +W K+L + G P+I FKD N PQ + Sbjct: 217 -------------------MEKREIWAKVLESRQQKGLPYILFKDNINRFKPQVYKDKNR 257 Query: 579 -VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 +HSSNLC+EI L S+ +E+ +C L S+NL +D K ++ A+ LD V+ Sbjct: 258 TIHSSNLCSEIALPSTEDESFICCLSSMNLE------LYDEWKDTEAVKLAIYFLDGVLQ 311 Query: 638 INCHTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 E + HRA+GLG MG+ S L IP+ A + + E IS Sbjct: 312 EFIAKTEGNHYLASANRFAKNHRALGLGAMGWHSYLQKNRIPFEGMRAKGLTHQIFEDIS 371 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 A AS ELA G KG Sbjct: 372 AKATKASKELATIYGEPEMLKG-------------------------------------- 393 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G+RN+ MAIAPT + + I G S I+P N Y G+F N +L L Sbjct: 394 ----YGLRNTTLMAIAPTTSSSAILGQTSPGIEPFSSNYYKAGLAKGNFMRKNKYLKQLL 449 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 +++ L +E + H GS+ ++E + + K I T EI + +I+ AS RQK+IDQA Sbjct: 450 EEKGLDNEDTWRSIMLHHGSVQHLETLTQEEKDIFKTFKEISQLEIIQQASVRQKFIDQA 509 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 QSLNL + + ++ + +AW +G+KT YY RS+S + Sbjct: 510 QSLNLNIPAGVPVRDVNQLMIEAWKLGVKTLYYQRSQSVSK 550 >gi|219853155|ref|YP_002467587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosphaerula palustris E1-9c] gi|219547414|gb|ACL17864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanosphaerula palustris E1-9c] Length = 730 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 164/622 (26%), Positives = 269/622 (43%), Gaps = 86/622 (13%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 F + +A E A FY ++S F+ ++PTL N+GT QLS+CF VPD + Sbjct: 23 FEDICHRVAAALAADEAEAARFYEAMASLRFLPNSPTLMNAGTEIGQLSACFTLPVPDSI 82 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 GIF A+++ A++ K GG G +++ +R G+ + T G + G I F++V N + Q Sbjct: 83 GGIFDAMKQGAIIHKTGGGTGYNFSNIRPEGSPVQSTEGVASGPISFMRVFNAATEVIKQ 142 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 GG+R+GA L H D+ F++ + G+ + N + + D FM V++ Sbjct: 143 GGRRRGANMGILNVQHPDILAFINAKTREGE----IANFNISVMVDDAFMHLVSEK---- 194 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F+ + + + I+ +W ++ +++ G P Sbjct: 195 ----------------TFDKVWLVHPHTGEA--------ITVGQIWSGIVDGIWKNGEPG 230 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 I F D N +P +G++ ++N C E L C LGSINL A + D D Sbjct: 231 ILFYDEINRHNPTPQLGMIDTTNPCGEQPLLPY----ESCVLGSINLAACVKGHVLDEDL 286 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 L T+RT VR+LD VID N + IE+ ++ T R IGLGLMG AL ++ +PY SPEA Sbjct: 287 LKETVRTGVRLLDIVIDKNVYPIEEIAEATRTTRKIGLGLMGVHDALLMVRLPYDSPEAR 346 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR 740 + M+ +S A+ S LA+ G + + +GS+W Sbjct: 347 VWCEHVMKVVSETAVDESRVLAELLGPFPALQGSVW------------------------ 382 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD-F 799 +RN+ IAPT TI+ + G S I+P + Y + N G F Sbjct: 383 -------------TEFQVRNAAMTTIAPTGTISLLAGCSSGIEPIFSFAYTRKNTVGKTF 429 Query: 800 TVVNSFLVNELKQR-------DLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF 849 VVN L++ + ++ H G++ ++ +P +++ TA Sbjct: 430 LVVNPVFKEALEETLALQGYSGDDQTHRVDEVIAHVHETGTVQDLVWLPVAFRRLCKTAL 489 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 +I +E + Q+ + + S + + + AW +GLK R+ S Sbjct: 490 DIPWRDHVEMQAAFQREVHASISKTINMPKSATRDDCAEALLLAWRLGLKGITIYRTNSR 549 Query: 909 TSVEKSTLKGVDGKLNAVPVTD 930 V TLK + V V Sbjct: 550 EDVVL-TLKEAAPSPSPVAVQT 570 >gi|154249118|ref|YP_001409943.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Fervidobacterium nodosum Rt17-B1] gi|154153054|gb|ABS60286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Fervidobacterium nodosum Rt17-B1] Length = 841 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 166/694 (23%), Positives = 297/694 (42%), Gaps = 97/694 (13%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKR 338 L + +++ +D +IL +RYFL +G +E RVA +A E Sbjct: 5 LTSVIEHWKDVELSKNAYKILSERYFLKTPSGEFLEKSWDDICRRVARVIATAELVNNPE 64 Query: 339 AVE----------------FYNLLSSFHFMCSTPT------------------------- 357 E F++ L S F+ ++PT Sbjct: 65 LKEKSPFEQLDEVKFWESTFFDFLKSRIFIPNSPTLFNAGMGVRHELLWKSIDDMTLEDY 124 Query: 358 --LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 ++NS LS+CF+ V D + GIF A++E A++ K GG+G++++ +R G+ + Sbjct: 125 WEIYNSRNHLHMLSACFVVPVEDSIEGIFEAVKEYALITKAGGGIGSNFSRLRPKGSFVA 184 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RR 474 GT+G++ G + F+ V N V QG +R+GA+ L H D+EEF+ ++ + Sbjct: 185 GTHGQASGPVSFMHVFNSAVGVVEQGYRRRGALMGILNIDHPDIEEFITAKEGNDGEKVL 244 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 + +++ + M R + E+ E + + Sbjct: 245 KFFNISVG-----ITMDRQELLKLYM----------------------EDGEIELKHPKC 277 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 +++ L K+ ++TG P + F N + S+N C EI L Sbjct: 278 NGSKRVKVRELINKIAKNAWKTGDPGLAFLSEMNKYYAMYPEMTIESTNPCGEIGLAPY- 336 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGSI++ + N +F ++ A R AVR LD+VID+N +EK +K+ R Sbjct: 337 ---EACNLGSIDVAKFYMNGEFYWEAFAQATRLAVRFLDDVIDVNVFPLEKIRKAVTDSR 393 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IGLG+MGF L+++ IPY S E + A + +++ H S +LAQ +G++ F+ S Sbjct: 394 RIGLGIMGFADLLYMMDIPYNSHEGRQFAADMTAYMAIHGHDESNKLAQLKGSFPLFEKS 453 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + + + AM + + + G RN + IAPT +I+N Sbjct: 454 RYYR-----------EDEFAPFAMGMSKYDNELKEVFKESKKGKRNVAVLTIAPTGSISN 502 Query: 775 ICGVSQSIDPSYQNLYVK-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 I S ++P++ YV+ VN L ++L + L + D G Sbjct: 503 IADTSSGLEPNFLLAYVRYMNKHDGTKEALFYVNKVLESKLNKEIL---ERVKDKLVERG 559 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 S+ +I IP+++K++ TA +I PM + Q+++D S + + + + + I Sbjct: 560 SLQDIPEIPEEIKRVFVTAMDISPMDHLLMQDAFQRYVDNNISKTINMPNSATEEDVLNI 619 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 Y +A + ++ R S + ++ K + K Sbjct: 620 YLEAMKLNIRGLTIYRDGSLQTQVLTSAKNLKTK 653 >gi|83943745|ref|ZP_00956203.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. EE-36] gi|83954746|ref|ZP_00963457.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. NAS-14.1] gi|83841030|gb|EAP80201.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. NAS-14.1] gi|83845425|gb|EAP83304.1| ribonucleoside-diphosphate reductase, putative [Sulfitobacter sp. EE-36] Length = 760 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 157/658 (23%), Positives = 262/658 (39%), Gaps = 85/658 (12%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ + + + R+A LA E EK FY L F F+ + Sbjct: 15 MKYRFKDADGTPRDVTVEDSWRRIARDLAQVEKAPEKWEEAFYEALEDFKFLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G + Sbjct: 75 AGTARRVTLFNCFVMGTVPDSMAGIFDMLKEAAVTMQQGGGIGYDFSTIRPRGADVLGVS 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM V +A W L KV+R Sbjct: 191 FNMSVLITDPFMDAVKADASWDLQF-----------------------------NGKVYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ +E P + F D N + + + ++N C E L Sbjct: 222 TVQARDLWNRIMKATYEFAEPGVIFIDRINEANNLSYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ ++ D + L + TAVR++DNV+D++ +++ + Sbjct: 278 ACLLGSINMARMVSDPFGDNPQLDVEALNKLVATAVRMMDNVVDVSKFPLDEQQAEAKAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S A E + ++ I+ A ASV+LA+E+GA+ F+ Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSDAAAEQTEAWLKAIARAAYLASVDLAKEKGAFPLFEA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + T + ++++ + G+RN+ +IAPT TI+ Sbjct: 398 DAY--------------------LASGTMQQMDEDVRDAIAENGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + M DLK Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRDLKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L A + P+ ++ + QKW+D + S + + S +Y Sbjct: 485 -----DAPLPDYFVNAQTLAPLDHVKMQAAAQKWVDSSISKTINCPEDISFDAFKDVYMA 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 AW G K R T S + D V + S E Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLSVSESADTAPGEVAAQATAEEGGEVVYMSDPLDRPE 597 >gi|254459677|ref|ZP_05073093.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacterales bacterium HTCC2083] gi|206676266|gb|EDZ40753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacteraceae bacterium HTCC2083] Length = 762 Score = 340 bits (871), Expect = 9e-91, Method: Composition-based stats. Identities = 149/642 (23%), Positives = 256/642 (39%), Gaps = 85/642 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + ++R+A LA E + E +FY L F ++ + Sbjct: 15 MKYRFKEADGTPIDATVEDSWVRIAKDLAKVEKDPEHWEEQFYAALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ +PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARNVTLFNCFVMGAIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V +A W L + +V+R Sbjct: 191 FNVSVLITDPFMEAVKADAEWDLEF-----------------------------DGEVYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A+ LW K++ ++ P + F D N + + + ++N C E L Sbjct: 222 TVRALELWNKIMQGTYDYAEPGVIFIDRINKANNLGYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL N D L + TAVR++DNV+D + ++ + Sbjct: 278 ACLLGSINLARLVPNPFEVDAALDVSALNELVATAVRMMDNVVDASKFPLDAQAREAAAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ Y S EA D+ + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMVGQRYGSEEAARQTDQWLHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 D + ++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 --------------------DAFLASGAMLDMDEDVRDAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ +W + Sbjct: 438 LYAGNVSSGIEPVFAYAYSRKVLQKDGSRTEEEVVD--YAVQMWRDKFGDK--------- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P+ + + QKW+D + S + + + +Y + Sbjct: 487 -------ELPDYFVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDIAFDDFKEVYME 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 AW G K R T S + + TD Sbjct: 540 AWDSGCKGCTTYRPNDVTGSVLSVSEDKKDAPEVIANTDAEP 581 >gi|109287943|ref|YP_654637.1| hypothetical protein MIV065R [Invertebrate iridescent virus 3] gi|123862746|sp|Q196Z5|RIR1_IIV3 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|106073566|gb|ABF82095.1| hypothetical protein MIV065R [Aedes taeniorhynchus iridescent virus] Length = 630 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 185/680 (27%), Positives = 277/680 (40%), Gaps = 101/680 (14%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + R+ F+ LGLQ L D Y PQ F +A + E A Y+ Sbjct: 4 IDESRNNLFDALGLQRLKDSYMKEDES----SPQERFAFIARQFCADD---EPLAQRLYD 56 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S S+P L T+ +CFL + D G+ E + L+ Sbjct: 57 YMSQHWLSPSSPQLSFGRTKQGLPIACFLPYLHDTARGLIDTWAEVSELSMIG------- 109 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 GLG I + KS G+IP L+ + + A QG R+G+ AYL+ H ++ FL+ Sbjct: 110 -GGIGLGVGIRQPDEKSVGIIPHLRTYDASCTAYKQGQTRRGSYAAYLDISHPEILSFLN 168 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI---- 520 R+ GD + +++ +PD FMK++ + +P D F+ Sbjct: 169 TRRVGGDHNYKLLNLHNGVNVPDSFMKKI---WILSTLAPFVKMDPCPTTETLFKKAVTT 225 Query: 521 ----AY----------------------ENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 Y N D KV I A LW +++ Sbjct: 226 LKDSRYFGADDRWLGEVSFAALAEQLDVVNRWDLIDPHTGKVKETIKATELWERIILTRA 285 Query: 555 ETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ETG P+I + D N PQ + SNLC+E+ L + TAVC L S+NL +F Sbjct: 286 ETGEPYIHWIDTSNRALPQFQKNLGLSIRQSNLCSEVVLPTDETRTAVCCLASLNLD-YF 344 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + VL ID T+++A S + RAIG+G +GF S L Sbjct: 345 DKWCNNEQFYLDVATYLDNVLQYFIDHAPPTLKRAVHSARSERAIGIGALGFHSYLQSKM 404 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + S A I + + IS H ++EL + RG G+ Sbjct: 405 VDIESLPAYLINKKIFKTISSHLERVNLELGELRGEAPDCVGT----------------- 447 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLY 790 G R S+ AIAP AT + I G S S +P N+Y Sbjct: 448 -------------------------GRRFSHMTAIAPNATSSIIMGNTSPSCEPFRANIY 482 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWD---EAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 + +SG F N L L++R + E + S +K HDGS+ ++ ++ KK+ T Sbjct: 483 KQDTISGSFVTYNKHLKRLLEERIPDNQARERVWSSIKMHDGSVQHLNQLTVQEKKVFKT 542 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 EI+ + L+ A+ RQKWIDQ+QS +L+ + + + I+ +AWL GLKT YY RSR Sbjct: 543 WPEINQLSLVMLAADRQKWIDQSQSTSLFFNPDERISYVHKIHLKAWLHGLKTLYYFRSR 602 Query: 907 SATSVEKS--TLKGVDGKLN 924 +V+K T D K Sbjct: 603 KILTVDKVHHTTTTADPKTE 622 >gi|163744560|ref|ZP_02151920.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus indolifex HEL-45] gi|161381378|gb|EDQ05787.1| ribonucleoside-diphosphate reductase, putative [Oceanibulbus indolifex HEL-45] Length = 759 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 154/656 (23%), Positives = 264/656 (40%), Gaps = 90/656 (13%) Query: 293 FEYLGLQILYDR-YFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F + ++D Y + + + R+A LA E++ + +F+ L F Sbjct: 4 FTAPIAEQIWDMKYRFKGADGTAKDVTVEDTWRRIARDLAQVESDADGWEDKFFGALEDF 63 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 ++ + +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ + Sbjct: 64 KYLPAGRITAGAGTARRVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTI 123 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G + + G + F+ V + + G R+GA+ A + H DVE+F+ + Sbjct: 124 RPRGADVLGVSADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK- 182 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D R N + + D FM+ V + W L Sbjct: 183 ---SDPARLRMFNMSVLVTDPFMEAVKADGSWDLLFG----------------------- 216 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 KV++ + A LW ++ + P + F D N + + + ++N C E Sbjct: 217 ------GKVYKTVQARDLWNNIMQATYSYAEPGVIFIDRINAANNLNYCETIAATNPCGE 270 Query: 588 ITLNSSSEETAVCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 L C LGSINL D D ++ + TAVR++DNV+D++ Sbjct: 271 QPLPPY----GACLLGSINLARLVAQPFDEAAHLDQDAMSELVATAVRMMDNVVDVSNFP 326 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + R IGLG+ G AL ++ + Y S EA + ++ I+ A ASV+LA Sbjct: 327 LPEQANEAQNKRRIGLGVTGLADALLMVGLRYGSDEAAAQTESWLKAIARAAYLASVDLA 386 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +E+GA+ F ++ + T + D+++ ++ G+RN+ Sbjct: 387 KEKGAFPLFDA--------------------EKFLASGTMQQMDDDVRDAIREHGIRNAL 426 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +IAPT TI+ G S I+P + Y + + D + +V+ + M Sbjct: 427 LTSIAPTGTISLYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMW 479 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 +LK L A + P ++ + QKWID + S + + Sbjct: 480 RELKGDT-----------PLPDYFVNAQTLPPADHVKMQAAAQKWIDSSISKTINCPEDI 528 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 S +Y QAW MG K R T S L K + P P+ + Sbjct: 529 SFDDFKDVYMQAWDMGCKGCTTYRPNDVTG---SVLSVSSEKTDKAPADSPDQVSE 581 >gi|83952673|ref|ZP_00961403.1| ribonucleoside-diphosphate reductase, putative [Roseovarius nubinhibens ISM] gi|83835808|gb|EAP75107.1| ribonucleoside-diphosphate reductase, putative [Roseovarius nubinhibens ISM] Length = 820 Score = 339 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 146/632 (23%), Positives = 246/632 (38%), Gaps = 85/632 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 + +G+ + + + R+A LA E F+ L F ++ + Sbjct: 1 MKYRYKEPDGTVHDGSVEDTWRRIARALAQAEKTPADWEGRFFEALEDFKYLPAGRITAG 60 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPDD+ GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 61 AGTGRSVTLFNCFVMGTVPDDMGGIFDMLREAALTMQQGGGIGYDFSTIRPRGADVKGVG 120 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 121 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEQFIAAK----SDPARLRM 176 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV+R Sbjct: 177 FNLSVLVTDPFMEAVRADGSWDLIF-----------------------------DGKVYR 207 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I A LW ++ ++ P + F D N ++ +V + ++N C E L Sbjct: 208 TIQARDLWNTIMQATYDYAEPGVIFIDRINAQNNLNYVETIAATNPCGEQPLPPY----G 263 Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ D L + TAVR++DNV+DI+ + + Sbjct: 264 ACLLGSINMARLVADPFSEAAHLDEGALNDLVETAVRMMDNVVDISRFPLPAQEAEAQNK 323 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y SPEA E M I+ + +AS LA E+GA+ + Sbjct: 324 RRIGLGVTGLADALAMVGLRYGSPEAAEQTGVWMARIANASYAASARLAGEKGAFPLYDA 383 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + + E + + G+RN+ ++APT TI+ Sbjct: 384 KAYAK--------------------APMIKKLDAETRALIAEHGLRNALLTSVAPTGTIS 423 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + N Y + + D + +V+ + M D+K Sbjct: 424 LYAGNVSSGIEPIFANSYTRKVLQKDGSRTEEEVVD-------YAVQMWRDVKG------ 470 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L + A + P + + Q W+D + S + + + +Y Q Sbjct: 471 -----DAPLPEYFVNAQTLSPADHVRMQAAAQDWVDSSISKTINCPEDIDFEAFKDVYMQ 525 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 AW G K R T S + Sbjct: 526 AWDTGCKGCTTYRPNDVTGSVLSVEAPANATA 557 >gi|194172963|ref|YP_002003607.1| ribonucleoside triphosphate reductase alpha chain [Escherichia phage rv5] gi|114796001|gb|ABI79175.1| ribonucleoside triphosphate reductase alpha chain [Escherichia phage rv5] Length = 771 Score = 339 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 171/828 (20%), Positives = 321/828 (38%), Gaps = 82/828 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ +G ++F+ +RL G + + + + YK +YDG + ++ A+I S Sbjct: 4 KVIKSNGCEVAFDPERLNKAAIFGDDG--NGNWSHIALDAYKRLYDGCTTKEVNQAIIDS 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + K+ ++++ R L+ ++ +E K P P ++ +E+G Sbjct: 62 CVS--RKDEEHSRMAGRVLIGQIYKEAFGGFTKIPSL----------PSFYNTMVEKGYW 109 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMR 323 +L L + + +D + Y L+ D+Y + + E PQ FM Sbjct: 110 E---DMGYSFTELNTLDAVIDHSKDLGYGYAVLKQFRDKYGIKDTLKDTLFESPQMMFMG 166 Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +AM + + + + V+ Y LS TP L T +SC + D Sbjct: 167 IAMAVMKNMPKERRINDVVKLYTYLSDLKINAPTPYLNGLRTGKTGYASCCVIKADDTAK 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A + + G+G + R G + G K G IP+ + + N+ Sbjct: 227 SIGVAREVAYTMTVNQAGIGYYLSS-RSAGDGVRGNTIKHMGKIPYYRGIDAGVK-ENRQ 284 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R G+ ++E + LR +R + M+ + I F+ RV +N W L Sbjct: 285 QSRGGSATVSFLALDPQIDELIRLRNPMTVASKRINTMDYSIGINRSFINRVAKNLDWML 344 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 S LH+ ++ + + + I A L ++LT E G ++ Sbjct: 345 VSYKHAPQLHEGIFTMSMEEFDAEVDRIAKDDSIPKTWIRARDLAVELLTQRIEVGRLFV 404 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--------GSINLLAHFAN 613 + D N +P V++SSNLC EI L + ++ L+ Sbjct: 405 YWTDEMNRHTPF--KDVIYSSNLCAEIALPTKGYSDMRNIFKHDVDDGEVALCFLSSLVA 462 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + ++ V ++DNV++I + E + + R+IG+GL + + Sbjct: 463 GRVTPEEYEDVAYYTVLMIDNVMEIMTYPYENMESTVKKRRSIGVGLTNVAHFIASHKVT 522 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y SPE+ ++ + E S+ AS+ LA+ERG + + +G PID+ + Sbjct: 523 YGSPESKQLVHDLAELHSYSLHKASLRLAKERGVCEWMHKTKYPEGWLPIDTYN---KEV 579 Query: 734 DELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 D + + + + W+ L+K + G+RNS A P + + + + P +++ K Sbjct: 580 DSVVKDPSLKQDWEGLRKEIIENGGLRNSVLEAYMPNESSSLATNTTNGVYPVREHIIFK 639 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 + G + D+LK+ + +A+++D Sbjct: 640 KSPQGQVLFIVPDY--------------------------------DELKEYYTSAWDVD 667 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-------EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +I+ + QK+ QA S +LY+D + S K+ +A G+KT YYL S Sbjct: 668 TNDMIDMYAVIQKFTGQAISADLYIDYTKLKDGKISMKEQLGYLIRATKFGMKTWYYLNS 727 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 R + +L+A + + + I S D CE C Sbjct: 728 RVGAG------DSLAEELHAKKQAEDETRKNYPLIADSSVEDPYCESC 769 >gi|149914029|ref|ZP_01902561.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. AzwK-3b] gi|149812313|gb|EDM72144.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. AzwK-3b] Length = 759 Score = 339 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 148/660 (22%), Positives = 256/660 (38%), Gaps = 85/660 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ I + + + R+A LA E + + +FY L F ++ + Sbjct: 15 MKYRLKEADGTPIDQSVEDTWRRIARALAAVEDDPKLWEQKFYAALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PDD+ GIF L+E A+ + GG+G D++ +R GA + Sbjct: 75 AGTGRSVTLFNCFVMGTIPDDMGGIFEMLKEAALTMQQGGGIGYDFSTIRPKGAEVKSVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIAAKA----DAARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L KV+R Sbjct: 191 FNLSVLVTDDFMEAVKADGPWELEFG-----------------------------GKVYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + + + ++N C E L Sbjct: 222 TVEARDLWNRIMQATYDYAEPGVIFIDRINAANNLNYCETISATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ + D D L + AVR++DNV+D + +E + Sbjct: 278 ACLLGSINMARLVTDPFGPEAALDEDALDDLVAVAVRMMDNVVDASRFPLEAQAREAEAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S EAV + + I+ A ASV+LA+E+G + F Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSDEAVAQTEAWLHQIARAAYLASVDLAREKGPFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + R ++++ + G+RN+ +IAPT TI+ Sbjct: 398 --------------------GAFLASGNMRGMDADVREAIAEHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ +W E Sbjct: 438 LYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVD--YAVQMWREKFGD---------- 485 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 DL A + P ++ + Q+W+D + S + + + +Y Q Sbjct: 486 ------ADLPDYFVNAQTLAPQDHVKMQAAAQRWVDSSISKTINCPADIGFEAFKDVYMQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECE 951 A+ G K R T S + D P+ + + TE E Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEASDAAPGEAGAQMPHEGGEIVYMSEPLDRPTELE 599 >gi|159045489|ref|YP_001534283.1| putative Vitamin B12-dependent ribonucleotide reductase [Dinoroseobacter shibae DFL 12] gi|157913249|gb|ABV94682.1| putative Vitamin B12-dependent ribonucleotide reductase [Dinoroseobacter shibae DFL 12] Length = 765 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 156/657 (23%), Positives = 255/657 (38%), Gaps = 85/657 (12%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + + R+A LA E++ +FY L F F+ + Sbjct: 15 MKYRFKEADGTPIDVTVEDSWRRIARALASVESDPAAWEPKFYAALEDFKFLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPDD+ GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTERSVTLFNCFVMGTVPDDMGGIFEGLKEAALTMQQGGGIGYDFSTIRPKGAAVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIAAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV+ Sbjct: 191 FNVSVLVTDAFMEAVKADGSWDLVF-----------------------------DGKVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ FE P + F D N + + + ++N C E L Sbjct: 222 TVEARDLWNKIMKATFEYAEPGVIFIDRINAANNLSYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL ++ D L + TAVR++DNV+D + +E Sbjct: 278 ACLLGSINLSRLISDPFGEGAALDEAALEELVATAVRMMDNVVDASRFPLEAQAAEARAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S A + + I+ A ASV+LA E+GA+ F+ Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSEAAARQTERWLHRIARAAYLASVQLATEKGAFPLFEA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + T + +++ + G+RN+ +IAPT TI+ Sbjct: 398 DAY--------------------LQSGTMQTMDADVRAAIAEHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ LW E Sbjct: 438 LYAGNVSSGIEPVFAYSYTRKVLQKDGSRTEEEVVD--YAVQLWREKFGD---------- 485 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +PD A + P+ + + QKW+D + S + + S + +Y Sbjct: 486 --ADLPDH----FVNAQTLAPLDHVRMQAAAQKWVDSSISKTINCPEDISFAEFKDVYMA 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW G K R + T S A S L S+ Sbjct: 540 AWDQGCKGCTTYRPNAVTGSVLSVSDSATKDSEAEKGEVKPVSEARLDGDVVYISEP 596 >gi|84683506|ref|ZP_01011409.1| ribonucleoside-diphosphate reductase, putative [Maritimibacter alkaliphilus HTCC2654] gi|84668249|gb|EAQ14716.1| ribonucleoside-diphosphate reductase, putative [Rhodobacterales bacterium HTCC2654] Length = 758 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 154/645 (23%), Positives = 260/645 (40%), Gaps = 89/645 (13%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ + + + + R+A LA E E+ EFY L F F+ + Sbjct: 15 MKYRLKEADGTAVDKTIEDTWHRIADALADSEPERAG---EFYAALEDFKFLPAGRITAG 71 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 72 AGTARNVTLFNCFVMGTIPDSMAGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAGVKGVA 131 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 132 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFITAK----SDAARLRM 187 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V W L + +R Sbjct: 188 FNMSVLVTDPFMEAVKSGGAWDLTF-----------------------------DGTTYR 218 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + + + ++N C E L Sbjct: 219 TVEARDLWNKIMQATYDYAEPGVIFIDRINRMNNLAYCETIAATNPCGEQPLPPY----G 274 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL + DYD L+ + TAVR++DNV+D + +E+ + Sbjct: 275 ACLLGSINLARLVEHPFEEAATLDYDALSDLVTTAVRMMDNVVDASRFPLEQQAREAEAK 334 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA + M+ I+ A ASVELA+E+G + F Sbjct: 335 RRIGLGVTGLADALLMLGLRYGSDEAAAQTEVWMKAIARAAYLASVELAKEKGPFPLFDA 394 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + + + D++++ ++ G+RN+ +IAPT TI+ Sbjct: 395 EAY--------------------LASGSLQHMDDDVREAIREHGIRNALLTSIAPTGTIS 434 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + M D Sbjct: 435 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVQMWRD--------- 478 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + DL A + PM ++ + QKW+D + S + + S + +Y + Sbjct: 479 --KFGDADLPDYFVNAQTLAPMDHVKMQAAAQKWVDSSISKTINCPEDISFEGFKDVYME 536 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 AW G K R T S + + TD Sbjct: 537 AWETGCKGCTTYRPNDVTGSVLS-VSEEKAAPEVLSTTDDEPRQP 580 >gi|51512034|gb|AAU05233.1| ribonucleoside-diphosphate reductase 1 alpha chain [Enterobacteria phage T5] Length = 811 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 156/796 (19%), Positives = 286/796 (35%), Gaps = 90/796 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204 K++ DGT+ F ++L E C + DVS + K + G+ +SD L ALI Sbjct: 42 KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ +LI+ P Y L ++R+ + + + H M + Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 150 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322 + + D L + ++RD F GL+ +D+Y G E PQ +M Sbjct: 151 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM + + A++ YN +S TP L + +SC L D L Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A + G+G R + + G +P+ + + + A N Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 326 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R G+ + ++ + + +++ D + M+ + +L +KR +N TL Sbjct: 327 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 386 Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFRK---ISAVALWRKML 550 S ++H+ + + FE Y E++ E K +SA + L Sbjct: 387 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPTAPKVSAKEILDTWL 446 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601 + ETG + N + + +NLC EIT + Sbjct: 447 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 504 Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + NL + T ++ +D +I+I + + + Sbjct: 505 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 564 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+GLM A+ + Y EA E +S+ ASV LA+E+GA F Sbjct: 565 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFNR 624 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +G+ ID+ + + + + W+ L+ + GMRNS A P + + Sbjct: 625 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 680 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + GV+ SI+P + + +K + + D + Sbjct: 681 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 721 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886 + A+++D + I+ + QK+ Q+ S N+Y D + + Sbjct: 722 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 770 Query: 887 FIYRQAWLMGLKTTYY 902 + A G KT YY Sbjct: 771 RDFMTAVKYGWKTWYY 786 >gi|89070843|ref|ZP_01158088.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516] gi|89043581|gb|EAR49790.1| Ribonucleotide reductase [Oceanicola granulosus HTCC2516] Length = 761 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 151/654 (23%), Positives = 257/654 (39%), Gaps = 85/654 (12%) Query: 302 YDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ ++ + + R+A LA E + +FY L F F+ + Sbjct: 15 MKYRLKDADGTPVDTDVEGTWRRIARALASVEADPAAWEPKFYAALEDFRFLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTDRSVTLFNCFVMGTVPDTMGGIFDMLKEAALTMQQGGGIGYDFSTIRPRGAPVAGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE+F++ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEQFIEAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V +A W L E VFR Sbjct: 191 FNMSVLVTDPFMEAVKADADWELTFGGE-----------------------------VFR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + + + ++N C E L Sbjct: 222 TVRARELWDRIMRSTYDYAEPGVIFIDRINEMNNLAYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL A D L + TAVR++DNV+D + + + + Sbjct: 278 ACLLGSINLARLVAEPFAEGASLDEAALDELVATAVRMMDNVVDASRFPLPQQAEEARNK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ Y S EA + + M+ I+ A AS +LA E+GA+ F+ Sbjct: 338 RRIGLGVTGLADALLMVGQRYGSEEAAALTEAWMKRIARAAYLASADLAAEKGAFPLFQA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + T D+++ + G+RN+ ++APT TI+ Sbjct: 398 EPY--------------------LASGTMAQMDDDVRAAIAEKGIRNALLTSVAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ LW E Sbjct: 438 LYAGNVSSGIEPVFAFAYNRKVLQKDGSRTEEEVVD--YAVQLWRET------------R 483 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +P A + PM + + QKW+D + S + + + + +Y + Sbjct: 484 GDAELPAH----FVNAQTLAPMDHVRMQAAAQKWVDSSISKTINVPADIDFESFKDVYME 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 A+ G K R T S + A V ++ + + Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEEKKEAPAAPEVVSDENAGEVIYMTEPLD 593 >gi|126728437|ref|ZP_01744253.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata E-37] gi|126711402|gb|EBA10452.1| ribonucleoside-diphosphate reductase, putative [Sagittula stellata E-37] Length = 762 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 141/644 (21%), Positives = 247/644 (38%), Gaps = 84/644 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ I+ + + R+A LA E E FY L F ++ + Sbjct: 15 MKYRLKEADGTPIDLSVEDTWRRIARALAEVEAEPAVWEDRFYAALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARSVTLFNCFVMGTIPDTMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAPVTGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIGAK----SDSARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + V+ Sbjct: 191 FNLSVLVTDTFMEAVKADGPWDLQF-----------------------------DGTVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + +V + ++N C E L Sbjct: 222 TVQARDLWNRIMRATYDYAEPGVIFIDRINKANNLNYVETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL + D D L + AVR++DNV+D + + + + Sbjct: 278 ACLLGSVNLARLVAEPFTDAARLDEDALDELVTCAVRMMDNVVDASRFPLPQQEAEAQAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ Y S EA A+ ++ I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMMGQRYGSEEAAVQAEGWLKRIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + ++++ V+ G+RN+ +IAPT TI+ Sbjct: 398 EKYLASGNM--------------------MAMDEDVRSAVREHGIRNALVTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + K +E ++ ++ Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQ--------------KDGTRTEEEVVDYAVQMYRAVH 483 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + +L A + P+ + + QKW+D + S + + S + +Y Sbjct: 484 GED---AELPDYFVNAQTLAPLEHVRMQAAAQKWVDSSISKTINCPEDISFEDFKEVYMA 540 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 A+ G K R T S + + Sbjct: 541 AYETGCKGCTTYRPNDVTGSVLSVSEEKKAPEVVANSDAEPQTP 584 >gi|59897233|gb|AAX12028.1| ribonucleoside-diphosphate reductase alpha chain [Enterobacteria phage T5] Length = 776 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 157/796 (19%), Positives = 287/796 (36%), Gaps = 90/796 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204 K++ DGT+ F ++L E C + DVS + K + G+ +SD L ALI Sbjct: 7 KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ +LI+ P Y L ++R+ + + + H M + Sbjct: 66 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 115 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322 + + D L + ++RD F GL+ +D+Y G E PQ +M Sbjct: 116 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM + + A++ YN +S TP L + +SC L D L Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A + G+G R + + G +P+ + + + A N Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 291 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R G+ + ++ + + +++ D + M+ + +L +KR +N TL Sbjct: 292 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 351 Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFR---KISAVALWRKML 550 S ++H+ + + FE Y E++ E K K+SA + L Sbjct: 352 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 411 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601 + ETG + N + + +NLC EIT + Sbjct: 412 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 469 Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + NL + T ++ +D +I+I + + + Sbjct: 470 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 529 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+GLM A+ + Y EA E +S+ ASV LA+E+GA F Sbjct: 530 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFNR 589 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +G+ ID+ + + + + W+ L+ + GMRNS A P + + Sbjct: 590 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 645 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + GV+ SI+P + + +K + + D + Sbjct: 646 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 686 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886 + A+++D + I+ + QK+ Q+ S N+Y D + + Sbjct: 687 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 735 Query: 887 FIYRQAWLMGLKTTYY 902 + A G KT YY Sbjct: 736 RDFMTAVKYGWKTWYY 751 >gi|34496901|ref|NP_901116.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC 12472] gi|34102757|gb|AAQ59121.1| ribonucleotide reductase system [Chromobacterium violaceum ATCC 12472] Length = 950 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 156/667 (23%), Positives = 271/667 (40%), Gaps = 82/667 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 ++L ++Y + S E+ RVA LA E + + F+ L F+ Sbjct: 17 EVLLEKYAKNGEQSVSEVR----HRVARALAELEKDPARFEPLFFEALDHG-FIPGGRIN 71 Query: 359 FNSGTR-HPQLSSCFLTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +GT L +CF+ V D + GI+ AL + A + GG+G +++ +R Sbjct: 72 SAAGTDLRATLINCFVQPVGDSVSETEHGKVGIYQALLQAAETMRRGGGVGYNFSRIRPR 131 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + GTN ++ G + +++V + + V G R+GA L+ H DVE+F+ + Sbjct: 132 GARVKGTNSRASGPVSYMRVFDRSCETVESAGARRGAQMGVLDVSHPDVEDFIHAK---- 187 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D+ + N + + D FM+ V +A W L V + D + F A Sbjct: 188 -DQGDLRNFNISVGVSDDFMRAVEADADWQLT--HAVEPMSDAFPDSFRRA--------- 235 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 + V+R + A LWR+++ ++ P + F N + + V+ S+N C E L Sbjct: 236 -DGLWVYRTVRARDLWRQIMESTYDHAEPGVLFMTRINQDNNLSYCEVIESTNPCGEQPL 294 Query: 591 NSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 + C+LGS+NL H FD+ +R +VR+LDNV+D+ + + Sbjct: 295 P----DYGCCDLGSVNLTRHVRAPFGDKAHFDFKSFEKVVRMSVRMLDNVLDLTVWPLPE 350 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ R +GLG G AL +L I Y S E A E + A ASV+LA E+ Sbjct: 351 QQREAMNKRRVGLGFTGLGDALIMLKIRYDSEEGRRFAARISESMRDAAYDASVDLAIEK 410 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ F + LA + +++ R++ G+RNS+ ++ Sbjct: 411 GAFPLFDAEKY-------------------LAAPHCASRLPAKIQARIRKHGIRNSHLLS 451 Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ S I+P + Y + D + E ++ D Sbjct: 452 IAPTGTISLAFADNASNGIEPPFSWFYTRKKRMAD---------------NSQQEYLVED 496 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 Y + + L +A E+ + + + ++D A S + + + Sbjct: 497 HAYRVWRMQGGD--TAKLPDYFVSALEMSALDHMRMVAAVAPYVDTAISKTVNVPADYPF 554 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS----RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 + + +Y +AW GLK R S SVE + L+ T + Sbjct: 555 EDFESLYLEAWRNGLKGITTYRPNNVLGSVLSVEPAQRAAAPEDLSGAASDPDRRVTLNT 614 Query: 939 GIPSSCT 945 + + Sbjct: 615 APTPALS 621 >gi|326632982|ref|YP_004306571.1| putative aerobic ribonucleoside diphosphate reductase large subunit [Enterobacteria phage SPC35] gi|321272176|gb|ADW80068.1| putative aerobic ribonucleoside diphosphate reductase large subunit [Enterobacteria phage SPC35] Length = 776 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 157/796 (19%), Positives = 287/796 (36%), Gaps = 90/796 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204 K++ DGT+ F ++L E C + DVS + K + G+ +SD L ALI Sbjct: 7 KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 65 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ +LI+ P Y L ++R+ + + + H M + Sbjct: 66 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 115 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322 + + D L + ++RD F GL+ +D+Y G E PQ +M Sbjct: 116 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 173 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM + + A++ YN +S TP L + +SC L D L Sbjct: 174 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 233 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A + G+G R + + G +P+ + + + A N Sbjct: 234 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 291 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R G+ + ++ + + +++ D + M+ + +L +KR +N TL Sbjct: 292 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 351 Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFR---KISAVALWRKML 550 S ++H+ + + FE Y E++ E K K+SA + L Sbjct: 352 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 411 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601 + ETG + N + + +NLC EIT + Sbjct: 412 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 469 Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + NL + T ++ +D +I+I + + + Sbjct: 470 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 529 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+GLM A+ + Y EA E +S+ ASV LA+E+GA F Sbjct: 530 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFDR 589 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +G+ ID+ + + + + W+ L+ + GMRNS A P + + Sbjct: 590 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 645 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + GV+ SI+P + + +K + + D + Sbjct: 646 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 686 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886 + A+++D + I+ + QK+ Q+ S N+Y D + + Sbjct: 687 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 735 Query: 887 FIYRQAWLMGLKTTYY 902 + A G KT YY Sbjct: 736 RDFMTAVKYGWKTWYY 751 >gi|46401832|ref|YP_006924.1| putative aerobic ribonucleoside diphosphate reductase, large subunit [Enterobacteria phage T5] gi|45775010|gb|AAS77142.1| putative aerobic ribonucleoside diphosphate reductase, large subunit [Enterobacteria phage T5] Length = 811 Score = 337 bits (863), Expect = 8e-90, Method: Composition-based stats. Identities = 157/796 (19%), Positives = 287/796 (36%), Gaps = 90/796 (11%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESD-LETALIF 204 K++ DGT+ F ++L E C + DVS + K + G+ +SD L ALI Sbjct: 42 KVIKRDGTVEDFAPEKLNGWAEYGCKTV-DVSWSAITMAAQKTLPKGVVDSDTLMDALIK 100 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ +LI+ P Y L ++R+ + + + H M + Sbjct: 101 AAESLIKDNPAYDVPAKELRLAQMRKRLYDSFEPPSLRFFHDHMVSVGAW---------- 150 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFM 322 + + D L + ++RD F GL+ +D+Y G E PQ +M Sbjct: 151 --EDMSAWITDEQFEALNQVIDHDRDRLFTSGGLKQFFDKYSRRNIATGEIYETPQFAYM 208 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 +AM + + A++ YN +S TP L + +SC L D L Sbjct: 209 GMAMAMLSQPNWTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFASCCLVDSTDTLDS 268 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I A + G+G R + + G +P+ + + + A N Sbjct: 269 IDTAEHIVFKMVAARAGIGYHLES-RSIADPVRNGAFPHSGKLPYYRHIDRSVKA-NTQQ 326 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R G+ + ++ + + +++ D + M+ + +L +KR +N TL Sbjct: 327 TRGGSATVSYPYFDPEIIQLMQVKQQRATDENKIDKMDYSLSFNNLLLKRYLKNEDITLM 386 Query: 503 SPDEVSDLHDLYGKE----FEIAYENYERQA-----DRGEIKVFR---KISAVALWRKML 550 S ++H+ + + FE Y E++ E K K+SA + L Sbjct: 387 SYFYAPEVHEAFYSDDEAKFEEIYVAAEKRVASLTKIDHEGKTVPAAPKVSAKEILDTWL 446 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN--------- 601 + ETG + N + + +NLC EIT + Sbjct: 447 RIRMETGRMYAHHIGESNRHGNF--LDPIRMTNLCVEITQPTRPFHHITELYKTKEQLDQ 504 Query: 602 --------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + NL + T ++ +D +I+I + + + Sbjct: 505 MKPEDIGEVSLCNLGGVVLGRMESLAEWEKTCYILLKFVDTIIEIQDYPFPTMEYTAKKR 564 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+GLM A+ + Y EA E +S+ ASV LA+E+GA F Sbjct: 565 RNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQGACEWFNR 624 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +G+ ID+ + + + + W+ L+ + GMRNS A P + + Sbjct: 625 TKPSKGILVIDTYKKTVDELVSVGLE----MDWESLRADILKYGMRNSVLTAQMPGESSS 680 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + GV+ SI+P + + +K + + D + Sbjct: 681 VLLGVTNSIEPPRKIVSIKGSAVNKVIAIAP---------GATDWETLMS---------- 721 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKK-------LD 886 + A+++D + I+ + QK+ Q+ S N+Y D + + Sbjct: 722 -----------YKLAYDVDRIEWIKWVATMQKFFSQSISTNMYYDYTKFENEIIPGPVVV 770 Query: 887 FIYRQAWLMGLKTTYY 902 + A G KT YY Sbjct: 771 RDFMTAVKYGWKTWYY 786 >gi|322384851|ref|ZP_08058512.1| ribonucleotide reductase large subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150320|gb|EFX43822.1| ribonucleotide reductase large subunit-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 891 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 143/643 (22%), Positives = 265/643 (41%), Gaps = 61/643 (9%) Query: 312 SRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 + + P + R+A +A E ++++ +F +L + + + Sbjct: 104 NIEKTPDEMWDRLAKAMASVEKTDAKRQEWTEKFRYILDEWKLVPGGRIAAGADASDELT 163 Query: 368 LSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ D GI L E + GG+G + + +R A + G NG S G + Sbjct: 164 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 223 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + W+ D+ +F+ +++ G + + N + I Sbjct: 224 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 279 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD ++ +A E+K +R + A +W Sbjct: 280 NSFMKAVKEDLDWELVFPDTTDPEYNEKWDG-----NLDAWKALGKEVKHYRTVRARDVW 334 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L + VCNL ++N Sbjct: 335 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 390 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + N+ D+++L +R +VR LDNVID + E+ +K+ R IG+G MG Sbjct: 391 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 450 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L I Y SPE++E D+ F++ A AS E+A E+G++ F + Q F + Sbjct: 451 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 510 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + E+ + + GMRN + APT + + G S I+P Sbjct: 511 MVA-----------------EFPEVGESISQNGMRNVTVITQAPTGSTGTMVGTSTGIEP 553 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y + + G W +A ++L Sbjct: 554 YFAFEYFRQSRLGFDKQYVPIAQE-------WKDAHPD----------------EELPDY 590 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 TA ++ I + + Q+W+D + S + + ++ +Y A+ +G K Sbjct: 591 FITAMDLSAEDHIRAQAAIQRWVDSSISKTANCPADFTVEETKRLYELAFDLGCKGVTIY 650 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 R S ST K + K AV + S + G +S + Sbjct: 651 RDGSRDVQVLSTDKKDEEKKPAVEQMEITSEAAAFGDEASLNN 693 >gi|163732870|ref|ZP_02140315.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149] gi|161394230|gb|EDQ18554.1| ribonucleotide reductase, putative [Roseobacter litoralis Och 149] Length = 834 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 148/631 (23%), Positives = 256/631 (40%), Gaps = 85/631 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + + R+A LA E + +FY+ L F ++ + Sbjct: 15 MKYRFKEADGAPIDVTVEDTWRRIARDLARVEKTPDIWEEQFYSALKDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFIAAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + +V+R Sbjct: 191 FNMSVLVTDPFMEAVKADGPWDLVF-----------------------------DGQVYR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + + + ++N C E L Sbjct: 222 TLQARDLWNRIMQATYDYAEPGVIFIDRINQANNLNYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ + D L + TAVR++DNV+D + +E + H Sbjct: 278 ACLLGSINMARLVSAPFEEAAKLDEVALNDLVATAVRMMDNVVDASKFPLEAQAREAHAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL ++ + Y S EA D + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMVGLRYGSDEAARQTDRWLHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + T + +++++ V+ G+RN+ +IAPT TI+ Sbjct: 398 DKY--------------------LASGTMQAMDEDVREAVREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ +W E Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD--YAVQMWREKFGDK--------- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + P+ ++ + QKW+D + S + + +Y + Sbjct: 487 -------ELPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDIGFDAFKDVYME 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 AW G K R + T S + Sbjct: 540 AWDSGCKGCTTYRPNAVTGSVLSVSEKKKAP 570 >gi|327198491|ref|YP_004327079.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa104] gi|311875187|emb|CBX44447.1| ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa104] Length = 744 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 158/781 (20%), Positives = 292/781 (37%), Gaps = 78/781 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + DGT+ F+ RL E A + V + + K +DG + SDL+ A+I + Sbjct: 4 NVKKSDGTVQPFDPSRLNRWAEWAAN--YGVDWAEIAVDAVKRCHDGCTTSDLQWAMIEA 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + +A + R L+ + +E K P + Y + + E Sbjct: 62 CIDRQTQ--AHANMAGRLLIGNVYKEAFGGFRKIPT------LTDFYDKMRTLNLWE--- 110 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323 D +L YL + + +D + Y ++ D+Y + E PQ FM Sbjct: 111 ----DMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166 Query: 324 VAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +A+ + + + + ++ Y LS TP L ++ +SC + D Sbjct: 167 MALAVMQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTAE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A + G+G R G + QG P+ N A N+ Sbjct: 227 SIGIAEHIAYTMTCKQAGIGI-LLQTRSKGDGVRNKTIVHQGKTPYFACINTAVKA-NKQ 284 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R G+ ++++ L L +++ M+ I + F++RV ++ W L Sbjct: 285 QTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWML 344 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 S + +LH +E +E + R + +SA L + L +ETG + Sbjct: 345 VSFKDAPELHKRMYGSYE-LFEVEYDRVMRNPGIKKKMVSARKLSKVFLKNRYETGRVYP 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--SSEETAVCNLG-------SINLLAHFA 612 F D N +P + + +SNLC EI L + + N ++ L+ Sbjct: 404 FFTDNMNTHTPFED--TIWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSIV 461 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + ++ + ++DNV+DI + E KKS R++G+G+ L Sbjct: 462 AGRVKPEEYEEVAYYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAHYLASNFT 521 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+SP+ + E S+ AS+ LA+ERG + S + G P++ + Sbjct: 522 NYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLEDYSQEVDN 581 Query: 733 RDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ T + W +L K +K G+R+S A P + + + + P Sbjct: 582 I----VDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYPVR----- 632 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + K GS+ + + + ++ +A+++ Sbjct: 633 ---------------------------ELKMFKKSPQGSVFFLAPDSEVIGDVYQSAWDV 665 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +IE + QK+ QA S + Y+ ++ S K A +G+KT YY+ S Sbjct: 666 PEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIYAHRLGMKTQYYMNS 725 Query: 906 R 906 R Sbjct: 726 R 726 >gi|325103986|ref|YP_004273640.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter saltans DSM 12145] gi|324972834|gb|ADY51818.1| ribonucleoside-diphosphate reductase, alpha chain [Pedobacter saltans DSM 12145] Length = 548 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 169/629 (26%), Positives = 258/629 (41%), Gaps = 112/629 (17%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 QIL Y L E PQ R+A A + + E A F ++S Sbjct: 7 LNEESEQILNRGYLLKG-----ETPQKAIERIANAAAKRLYKPEL-AESFIEMISKGWMS 60 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 S+P N GT SCF VPD + GI L E M K GG + +R G Sbjct: 61 LSSPIWANMGTERGLPISCFNVHVPDHIEGITHKLGEVIMQTKTGGGTSGYFGELRARGT 120 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + NGKS G + F+K+ + ++QGG R+GA AYL+ H D++EFLD++ Sbjct: 121 AVTD-NGKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIKEFLDIKNIG--- 176 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ +PD +M+ + + E Sbjct: 177 -NPIQNLFFGVCVPDYWMQDMIEGDR--------------------EKR----------- 204 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEIT 589 +W K+L + G P+I F D N P + +++SNLC+EI Sbjct: 205 -----------DVWAKVLECRQQKGLPYIFFSDNVNRFKPDVYKDKEMPIYASNLCSEIA 253 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK-- 647 L SS +E+ VC L S+NL +D K +R A LD V+ E Sbjct: 254 LPSSRDESFVCCLSSMNLE------LYDEWKDTGAVRLATFFLDAVMSEFIEKTEGNHYL 307 Query: 648 ----KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 HRA+GLG+MG+ S L I + S +A ++ + + + ++ AS ELA Sbjct: 308 QSANNFAKNHRALGLGVMGWHSYLQKNMIAFESLQAKQLTNTIFKDLQEKSLKASEELAN 367 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 G S KG G RN+ Sbjct: 368 IYGEPSLLKG------------------------------------------YGRRNATL 385 Query: 764 MAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +A+APT + + I G S I+P N Y G+F N +L L+++ + +E Sbjct: 386 LAVAPTTSSSAILGQTSPGIEPYSSNYYKAGLAKGNFIRKNKYLRALLEEKGIDNEETWR 445 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + + GS+ ++ + + K I T E+ +I AS RQK+IDQAQSLN+ + Sbjct: 446 TIMLNHGSVQHLTELTQEEKDIFKTFKELSQYEIILQASIRQKYIDQAQSLNINIPSNLP 505 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 K ++ + +AW +G+KT YY RS+S + Sbjct: 506 IKDVNNLIIEAWKLGVKTLYYQRSQSVSK 534 >gi|167463293|ref|ZP_02328382.1| Ribonucleotide reductase alpha subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 868 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 143/643 (22%), Positives = 265/643 (41%), Gaps = 61/643 (9%) Query: 312 SRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 + + P + R+A +A E ++++ +F +L + + + Sbjct: 81 NIEKTPDEMWDRLAKAMASVEKTDAKRQEWTEKFRYILDEWKLVPGGRIAAGADASDELT 140 Query: 368 LSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ D GI L E + GG+G + + +R A + G NG S G + Sbjct: 141 LFNCYVIPSPHDSRGGIMATLSEMTEIMSRGGGVGINLSSLRPRRAIVKGVNGSSSGAVS 200 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + W+ D+ +F+ +++ G + + N + I Sbjct: 201 WGGLFSYTTGLIEQGGSRRGALMLMINDWNPDLLDFITIKQTMG----QITNANLSVCIS 256 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD ++ +A E+K +R + A +W Sbjct: 257 NSFMKAVKEDLDWELVFPDTTDPEYNEKWDG-----NLDAWKALGKEVKHYRTVRARDVW 311 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L + VCNL ++N Sbjct: 312 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAVN 367 Query: 607 LLAHF--ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + N+ D+++L +R +VR LDNVID + E+ +K+ R IG+G MG Sbjct: 368 LSKFYDEKNHDVDWEELDKVVRYSVRFLDNVIDKTPYHFEENRKNQQGERRIGMGSMGLA 427 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L I Y SPE++E D+ F++ A AS E+A E+G++ F + Q F + Sbjct: 428 ELMIKLKIRYGSPESLEFLDKLYGFMARAAYLASSEIAAEKGSFEHFDTEKFLQSGFMKN 487 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + E+ + + GMRN + APT + + G S I+P Sbjct: 488 MVA-----------------EFPEVGESISQNGMRNVTVITQAPTGSTGTMVGTSTGIEP 530 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y + + G W +A ++L Sbjct: 531 YFAFEYFRQSRLGFDKQYVPIAQE-------WKDAHPD----------------EELPDY 567 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 TA ++ I + + Q+W+D + S + + ++ +Y A+ +G K Sbjct: 568 FITAMDLSAEDHIRAQAAIQRWVDSSISKTANCPADFTVEETKRLYELAFDLGCKGVTIY 627 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 R S ST K + K AV + S + G +S + Sbjct: 628 RDGSRDVQVLSTDKKDEEKKPAVEQMEITSEAAAFGDEASLNN 670 >gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] Length = 830 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 148/631 (23%), Positives = 257/631 (40%), Gaps = 85/631 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ ++ + + R+A LA ET+ FY L F F+ + Sbjct: 15 MKYRLKEADGTPVDRSVEDSWRRIARALAAVETDAAVWEDRFYAALEDFRFLPAGRITAG 74 Query: 361 SGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT R L +CF+ TVPD++ GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTGRRVTLFNCFVMGTVPDNMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIGAK----SDPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V + W L + KV+ Sbjct: 191 FNMSVLVTDAFMEAVKADGSWDLLF-----------------------------DGKVYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + + + ++N C E L Sbjct: 222 TLKARDLWNRIMQATYDYAEPGVIFIDRINKANNLAYCETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL + D + L +RTA+R++DN +D + +E + Sbjct: 278 ACLLGSVNLARLVTDPFTDAARLDPEALDDLVRTAIRMMDNTVDASKFPLEAQAREAEAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S EA + M+ I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLRYGSDEAAAQTEAWMKAIARAAYLASVDLAKEKGAFPLF-- 395 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 RD + T + ++++ V G+RN+ ++APT TI+ Sbjct: 396 ------------------DRDAYLASGTMQAMDEDVRAAVAEHGIRNALLTSVAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +++ + M D+K Sbjct: 438 LYAGNVSSGIEPVFAYEYTRKVLQKDGSRTEEKVID-------YAVQMWRDVKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L A + P+ ++ + QKW+D + S + + S + +Y + Sbjct: 485 -----DAPLPDYFVNAQTLAPLEHVKMQAAAQKWVDSSISKTINCPEDISFEAFKDVYME 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 A+ G K R T S + Sbjct: 540 AYETGCKGCTTYRPNDVTGSVLSVSEAKAAA 570 >gi|219681362|ref|YP_002456126.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa21-4] gi|199580629|gb|ACH89016.1| putative ribonucleoside triphosphate reductase alpha chain [Erwinia phage phiEa21-4] Length = 744 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 160/781 (20%), Positives = 295/781 (37%), Gaps = 78/781 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 + DGT+ F+ RL E A + V + + K +DG + SDL+ A+I + Sbjct: 4 NVKKSDGTVQPFDPSRLNRWAEWAAN--YGVDWSEIAVDAVKRCHDGCTTSDLQWAMIEA 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + +A + R L+ + +E K P + Y + + E Sbjct: 62 CIDRQTQ--AHANMAGRLLIGNVYKEAFGGFRKIPT------LTDFYDKMRTLNLWE--- 110 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323 D +L YL + + +D + Y ++ D+Y + E PQ FM Sbjct: 111 ----DMGYSDSELDYLGLQINHYKDLNYGYAVVKQFRDKYAIKDALTKRVYESPQFMFMG 166 Query: 324 VAMGLALK--ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +A+ + + + + ++ Y LS TP L ++ +SC + D Sbjct: 167 MALAVMQNQPKDRRIQDVIKLYEYLSDLKINAPTPYLNGLRSKKSGYASCCVIKGDDTAE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A + G+G R G + QG P+ N A N+ Sbjct: 227 SIGIAEHIAYTMTCKQAGIGI-LLQTRSKGDGVRNKTIVHQGKTPYFACINTAVKA-NKQ 284 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R G+ ++++ L L +++ M+ I + F++RV ++ W L Sbjct: 285 QTRGGSATVGYTILDPEIDDLLRLNNPVTPPQKQLKFMDYQVGINESFLRRVDKDDEWML 344 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 S + +LH +E+ Y+R +IK + +SA L + L +ETG + Sbjct: 345 VSFKDAPELHKRMYGSYELFEVEYDRVMRNPDIKK-KMVSARKLSKVFLKNRYETGRVYP 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNS--SSEETAVCNLG-------SINLLAHFA 612 F D N +P + + +SNLC EI L + + N ++ L+ Sbjct: 404 FFTDNMNTHTPFED--TIWNSNLCMEICLPTKAFKSMAELYNPSVKAEGEIALCFLSSIV 461 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + ++ + ++DNV+DI + E KKS R++G+G+ L Sbjct: 462 AGRVKPEEYEEVAYYTLLMIDNVMDIMEYPYEALKKSAQYRRSVGVGITNLAHYLASNFT 521 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 Y+SP+ + E S+ AS+ LA+ERG + S + G P++ + Sbjct: 522 NYSSPKGKRMMHNLAELHSYSLHRASLRLAKERGVCEGMEVSKYRNGWTPLEDYSQEVDN 581 Query: 733 RDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 ++ T + W +L K +K G+R+S A P + + + + P Sbjct: 582 I----VDSTLQFDWLQLHKDIKANGGIRHSVLEAFMPNESSSLATNTTNGLYPVR----- 632 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + K GS+ + + + ++ +A+++ Sbjct: 633 ---------------------------ELKMFKKSPQGSVFFLAPDSEVIGDVYQSAWDV 665 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +IE + QK+ QA S + Y+ ++ S K A +G+KT YY+ S Sbjct: 666 PEKDMIECYAIFQKFTGQAISADFYMDYHKTGNKVSAKTALKSLIYAHRLGMKTQYYMNS 725 Query: 906 R 906 R Sbjct: 726 R 726 >gi|291614699|ref|YP_003524856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sideroxydans lithotrophicus ES-1] gi|291584811|gb|ADE12469.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Sideroxydans lithotrophicus ES-1] Length = 981 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 159/670 (23%), Positives = 271/670 (40%), Gaps = 83/670 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE-KEKRAVEFYNLLSSFHFMCSTPT 357 ++L ++Y Q RVA GLA ET + + E + L F+ + Sbjct: 49 EVLLEKYAEADEK----SVQDVRRRVARGLAQAETPEQRAKWEEAFFLAQENGFVPAGRI 104 Query: 358 LFNSG-TRHPQLSSCFLTTV-------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 +G L +CF+ V D GI+ ALQ+ A + GG+G D++ +R Sbjct: 105 NSAAGLKIQATLINCFVQPVGDAISGTNDGKPGIYDALQQAAETMRRGGGVGYDFSSIRP 164 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GAH+ GTN ++ G I +++V + + V G R+GA L H D+E+F+ + Sbjct: 165 EGAHVKGTNSRASGPISYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEKFISAK--- 221 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D+ + N + + D M+ V ++ + L E S E A Sbjct: 222 --DQGDLRNFNISVGVTDALMQAVEKDEEFELVHSAEPST-------------AIKEAGA 266 Query: 530 DRGE--IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 R E ++RK+ A LW++++ ++ P + F D N + + ++ ++N C E Sbjct: 267 TRREDGKWIYRKVRATDLWKQIIASTYDHAEPGVLFIDLMNRDNNLSYCEIIEATNPCAE 326 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHT 642 L C LGSI+L N FDY+ +R AVR+LDNV+D+ Sbjct: 327 QPLPPY----GCCCLGSIDLTRMVKNPFSKHAGFDYEPFKQLVRVAVRMLDNVLDVTAWP 382 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + ++ R IGLG G AL ++ + Y + A A + + A ASV+LA Sbjct: 383 LPEQQQEAKNKRRIGLGFTGLGDALVMMGLRYDTDAARAFASDITRIMRDEAYLASVDLA 442 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG + + L+ R + DE+K +++ G+RNS+ Sbjct: 443 VERGKFPLLDADKY-------------------LSAPRFASRLPDEIKDKIRKHGIRNSH 483 Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 ++IAPT TI+ S I+P++ Y + D T + + + Sbjct: 484 LLSIAPTGTISLAFADNASNGIEPAFSWFYTRKKRMMDGTTKDYPVE----------DHA 533 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 K G + ++ TA EI + ++ + +ID + S + + + Sbjct: 534 WRVFKQQGGDVSHLP-------PSFVTALEISAIDHMKMVAAVAPYIDTSISKTVNVPAD 586 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS--TLKGVDGKLNAVPVTDPNSSTHS 937 + +Y +AW GLK R S S T K D + V D + Sbjct: 587 YPYEDFKDLYTEAWKAGLKGLATYRPNSVLGSVLSVTTEKKEDQPQDFVFDQDRRIVLEA 646 Query: 938 LGIPSSCTSD 947 P+ + Sbjct: 647 TPNPALASLR 656 >gi|83313545|ref|YP_423809.1| ribonucleotide reductase, alpha subunit [Magnetospirillum magneticum AMB-1] gi|82948386|dbj|BAE53250.1| Ribonucleotide reductase, alpha subunit [Magnetospirillum magneticum AMB-1] Length = 781 Score = 334 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 147/635 (23%), Positives = 253/635 (39%), Gaps = 83/635 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 Q + RVA LA E + F+ + F + + + +GT L +CF+ Sbjct: 29 TIQDTWRRVARSLAAAEADPALWEERFFEAMEDFKLLPAGRIISGAGTDRRVTLFNCFVM 88 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 +PDD+ GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 89 GDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDA 148 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F+D ++ + R N + + D FM+ V Sbjct: 149 MCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKR----EAGRLRMFNLSVLVTDPFMQAV 204 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ W L + ++ + A LW K++ Sbjct: 205 KEDGPWELTF-----------------------------KGVTYKSLPARELWNKIMRAT 235 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 + P + F D N + + +H++N C E L + VC LGS+NL Sbjct: 236 YSYAEPGVIFIDRINRLNNLSYCEEIHATNPCGEQPLPAY----GVCLLGSLNLARLVDR 291 Query: 614 NQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D D+L +R AVR++DNVID++ + +E+ + R IGLG+ G AL Sbjct: 292 PFEDGARLDLDQLDRLVRVAVRMMDNVIDVSNYPLERHRHEAQAKRRIGLGITGLADALI 351 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L Y +A+ + + M I A AS ELA+E+GA+ + + G Sbjct: 352 LCGARYGGAQAIRLTETWMAAIRRSAYLASTELAKEKGAFPLYDAEKYLAG--------- 402 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQ 787 T + ++ + ++ G+RN+ +IAPT TI+ VS ++P + Sbjct: 403 -----------ETIQSLDSDVIEAIRANGIRNALLTSIAPTGTISLFADNVSSGLEPVFA 451 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + L++ E +SD Y E P L Sbjct: 452 FTYTRGV---------------LQKDGTRREEEVSDYAYRLFRRQRGENAP--LPSYFVD 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P + + QK++D + S + + + S + +Y+QA+ +G K R Sbjct: 495 ALSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFESFKDVYQQAYDLGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 T K + P + P Sbjct: 555 DVTGAVLEVKKEARPENADEPELPLEKAQVKHSDP 589 >gi|20090518|ref|NP_616593.1| ribonucleotide reductase [Methanosarcina acetivorans C2A] gi|19915544|gb|AAM05073.1| ribonucleotide reductase [Methanosarcina acetivorans C2A] Length = 558 Score = 334 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 152/596 (25%), Positives = 266/596 (44%), Gaps = 90/596 (15%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG 382 RVA ++ E E +EF +L+ F+ S+PTL N+GT QL++CF+ V D + Sbjct: 37 RVARAISTDEDE----YLEFKDLMVRKIFVPSSPTLMNAGTELGQLAACFVVPVKDSVEE 92 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 IF AL+ A++ K GG G +++ VR G+H +G + G I F+++ N+ + Q G Sbjct: 93 IFDALKTAALIQKTGGGSGFNFSRVRPKGSHALCVDGVASGPISFMRLFNEATEVIKQFG 152 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 +R+GA L+ H D+ F+ + G + N + + D F + V + ++ Sbjct: 153 RRRGANIGILDVSHDDIIPFIRAKHVEGS----FRNFNLSVMVRDAFFRLVEAGSTEEVW 208 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P + ++ +++ ++ G P + Sbjct: 209 NPRTGAT--------------------------------VGDVFSEIVEGIWRNGEPGVL 236 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 F D N + +G + ++N C E L CNLGS+NL A+ + ++D L Sbjct: 237 FYDRINRDNFTPGLGDITATNPCGEEPLLPY----ESCNLGSLNLSLFVADGKINWDFLR 292 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 T AVR LDN IDIN + + + ++ R IGLG+MGF L L + Y S EAVE+ Sbjct: 293 ETAGKAVRFLDNEIDINVYPVPEIAEATRKTRKIGLGVMGFHDMLLKLGLSYDSTEAVEL 352 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 A++ ME I++ A+ S +LA E+G + ++ S+W+ Sbjct: 353 AEKLMEQINWAAVRESRKLAAEKGPFPEYEKSIWELS----------------------- 389 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801 MRN+ AIAPT TI+ + G S I+P + +Y + + +F + Sbjct: 390 ---------------MRNATLTAIAPTGTISILAGCSAGIEPVFSWVYRRTRTVGKEFLL 434 Query: 802 VNSFLVNELKQRDLWDE--AMISDLKYHDGSIGNIER---IPDDLKKIHATAFEIDPMWL 856 V+ K R + ++ + Y G++ +I+ +P++ KK+ +A +I Sbjct: 435 VHPLFEAHFKPRLSESDYNELLEHV-YAHGTLQDIDDPEIVPENEKKLFRSALDIGWKTH 493 Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 I+ + Q+ S + + + + ++ AW GLK R+ S V Sbjct: 494 IDIQAAFQRHCHAGISKTINMPVDAGKEDIEQALIYAWKQGLKGITIYRTGSRQYV 549 >gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] Length = 822 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 147/655 (22%), Positives = 254/655 (38%), Gaps = 85/655 (12%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ I+ + + R+A LA E + + +FY L+ F ++ + Sbjct: 15 MKYRLKEGDGTPIDASVEDTWARIAKSLASVEKDPKAWEPKFYKALNDFRYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTDRSVTLFNCFVMGTIPDTMGGIFDGLREAALTMQQGGGIGYDFSTIRPKGAVVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DV +F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVMDFITAK----SDAARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V + W L + +V R Sbjct: 191 FNMSVLITDPFMEAVKADTPWDLIW-----------------------------DGEVVR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW ++ + P + F D N + +V + ++N C E L Sbjct: 222 TVQARDLWDSIMQSTYSHAEPGVIFIDRINTMNNLNYVETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLA-----HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL D ++L + AVR++DNV+D + +E + Sbjct: 278 ACLLGSINLARLVLNPFADAATIDDNELTELVGLAVRMMDNVVDASKFPLEAQAQEAVAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL + + Y SPEA + M+ I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMTGLRYGSPEAARQTEHWMKAIARAAYLASVDLAREKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + ++++ ++ G+RN+ ++APT TI+ Sbjct: 398 DKYLASGNM--------------------MQMDEDVRDAIREHGIRNALLTSVAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + M DLK Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVKMWRDLKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + M + + QKW+D + S + + + + +Y Sbjct: 485 -----DAELPDYFVNAQTLPAMDHVRMQAAAQKWVDSSISKTINVPEDIDFQSFKDVYMA 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 AW G K R T V+ + + S + + Sbjct: 540 AWDQGCKGCTTYRPNDVTGSVLCVGVSVETFGDRLKKKRSEMSLTQKELADAANI 594 >gi|146966|gb|AAA24223.1| ribonucleoside diphosphate reductase B1 subunit precursor [Escherichia coli] Length = 776 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 150/652 (23%), Positives = 258/652 (39%), Gaps = 35/652 (5%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 L + DG+ N ++ +++ A GL +VS V ++ YDG+ SD+ +I Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIK 64 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++ LI ++ P+Y + AR + LR++ ++ LY +E G Sbjct: 65 AAADLISRDAPDYQYLAARLAIFHLRKKATASLRPPA----------LYDHVVKM-VEMG 113 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFF 321 L E + + + + ++RD F Y ++ L +Y + G E Q + Sbjct: 114 KYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLY 173 Query: 322 MRVAMGLALKETEK-EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 + VA L + + FY+ +S+F TP + T Q SSC L D L Sbjct: 174 ILVAACLFSNYPREGLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSL 233 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK--VANDTAVAV 438 I G+ + + + + + D+ + Sbjct: 234 DSINATSSAIVKYVSQRAGIA---STPGVFVRWVARFAVVKRSIPAAFRSTTFPDSGESC 290 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 ++ + + WH++VE L L+ N G + R M+ I L R+ + Sbjct: 291 SRRCAGRRCGNVFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGED 350 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L+D + +EFE Y YE+ + +++ AV L+ M+ Sbjct: 351 ITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRK----QRVKAVELFSLMMQERAS 406 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D C SP V SNLC EI L + G I L Sbjct: 407 TGRIYIQNVDHCITHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFN 466 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+L AVR LD ++D + I AK+ R +G+G++ F L Sbjct: 467 LGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHG 526 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y+ A + ++ E I ++ + AS ELA+E+GA F + + +G+ PID+ + Sbjct: 527 KRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKIWI 586 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 T +L + K+ V A+ P+ T + I + I+ Sbjct: 587 PSLMSRCITTGKLCVSQSKRTVCVT----PTLSALMPSETSSQISNATNGIE 634 >gi|31791752|ref|NP_854245.1| ribonucleoside-diphosphate reductase large subunit NrdZ [Mycobacterium bovis AF2122/97] gi|121636488|ref|YP_976711.1| putative ribonucleoside-diphosphate reductase large subunit nrdZ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988960|ref|YP_002643647.1| putative ribonucleoside-diphosphate reductase large subunit [Mycobacterium bovis BCG str. Tokyo 172] gi|31617338|emb|CAD93447.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (LARGE SUBUNIT) NRDZ (RIBONUCLEOTIDE REDUCTASE) [Mycobacterium bovis AF2122/97] gi|121492135|emb|CAL70600.1| Probable ribonucleoside-diphosphate reductase (large subunit) nrdZ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772073|dbj|BAH24879.1| putative ribonucleoside-diphosphate reductase large subunit [Mycobacterium bovis BCG str. Tokyo 172] Length = 710 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 178/753 (23%), Positives = 295/753 (39%), Gaps = 132/753 (17%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI---VLSETYKNMYDGLSESDLETAL 202 K+ DGTL+ F+ R+E V A + + V + G++ + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREVACDDPDMPGTVAKAVADALGRGIAPVE----D 63 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 I AR +A ++ +Y Sbjct: 64 IQDCVE------------ARL-----------------GEAGLDDVARVY---------- 84 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFA-FEYLGLQILYDRYFLHIN-GSRIEMPQAF 320 + +L A L RD + +L +RY LH G E Sbjct: 85 ------IIYRQRRAEL-RTAKALLGVRDELKLSLAAVTVLRERYLLHDEQGRPAESTGEL 137 Query: 321 FMRVAMGLALKETEKEK-----RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 R A +A E + E A F LL + F+ ++PTL NSGT L+ CF+ Sbjct: 138 MDRSARCVAAAEDQYEPGSSRRWAERFATLLRNLEFLPNSPTLMNSGTDLGLLAGCFVLP 197 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D L IF L + A L + GG G ++ +R G + T G + G + FL++ + A Sbjct: 198 IEDSLQSIFATLGQAAELQRAGGGTGYAFSHLRPAGDRVASTGGTASGPVSFLRLYDSAA 257 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ GG+R+GA A L+ H D+ +F+ + + + N + + D F++ V + Sbjct: 258 GVVSMGGRRRGACMAVLDVSHPDICDFVTAKAESPSE---LPHFNLSVGVTDAFLRAVER 314 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N L +P K+ ++ A L+ + Sbjct: 315 NGLHRLVNPRT---------------------------GKIVARMPAAELFDAICKAAHA 347 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ 615 G P + F D N +P G + ++N C E+ L CNLGSINL A+ + Sbjct: 348 GGDPGLVFLDTINRANPVPGRGRIEATNPCGEVPLLPY----ESCNLGSINLARMLADGR 403 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D+D+L AVR LD+VID++ + + ++ R IGLG+MG L L IPY Sbjct: 404 VDWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYD 463 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 S EAV +A M I A +AS LA+ERGA+ +F S + + Sbjct: 464 SEEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDSRFARSGP-------------- 509 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 RN+ ++APT TI+ I G + I+P + + ++ + Sbjct: 510 ----------------------RRNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIV 547 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 VN + R + + +I+++ G + R+P +++ TA EI P W Sbjct: 548 GRHLLEVNPCFDRLARDRGFYRDELIAEIAQRGG-VRGYPRLPAEVRAAFPTAAEIAPQW 606 Query: 856 LIESASRRQKWIDQAQSLNLYLDEPSGKKLDFI 888 + + Q+ ++ A S + L +G+ + Sbjct: 607 HLRMQAAVQRHVEAAVSKTVNLP-ATGRSMTSA 638 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 12/116 (10%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V +R+G + FD ++I A+ +A V + D+ + + L + Sbjct: 8 KVRRRDGTLVPFDIARIEAAVTRAAREV-------ACDDPDMPGTVAKAVADALGR---- 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKL 145 I +EDIQD VE L ++G + R Y++YR+ R+++R A++ + L Sbjct: 57 -GIAPVEDIQDCVEARLGEAGLDDVARVYIIYRQRRAELRTAKALLGVRDELKLSL 111 >gi|307352276|ref|YP_003893327.1| adenosylcobalamin-dependent ribonucleoside-diphosphate reductase [Methanoplanus petrolearius DSM 11571] gi|307155509|gb|ADN34889.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoplanus petrolearius DSM 11571] Length = 566 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 156/608 (25%), Positives = 262/608 (43%), Gaps = 92/608 (15%) Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 RVA +A E E+++++++ F+ ++PTL N+GT QL++CF V D Sbjct: 24 ELCRRVAGAIADSPEE----EAEYFDMMNTLRFLPNSPTLMNAGTDMNQLAACFTLYVGD 79 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 + IF A++ AM+ K GG G +++ +R GA + + G + G + F+K + + Sbjct: 80 SITEIFDAMKWGAMIHKSGGGTGYNFSNIRPEGAFVESSEGVASGPVSFMKAFDAVTGVI 139 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 QGG+R+GA L H D+ +F++ + GD + N + + D FM V Sbjct: 140 RQGGRRRGANMGILNVDHPDILKFINSKTREGD----IANFNISVMVTDRFMGLVEAG-- 193 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 F+ + E A +I+ +W + ++ G Sbjct: 194 ------------------RFDRVWITREETA--------EEITVGDIWNGITEGIWRNGE 227 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFD 617 P + F D N ++ +G ++++N C E L C LGSINL + D Sbjct: 228 PGLLFYDEINRKNMTPALGNINATNPCGEQPLLPF----ESCVLGSINLSKFIDEKGETD 283 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 L TIRTAV+ LD +ID N + I + +++ R +GLGLMG AL + IPY SP Sbjct: 284 LASLEKTIRTAVKFLDRIIDKNRYPIPEIEEATKRTRKVGLGLMGVHDALIMRRIPYDSP 343 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 E + M+F++ A+S S LA+E+G + ++KGS+W Sbjct: 344 EGRKYCGSIMQFVAETAVSESGRLAEEKGPFPAWKGSVW--------------------- 382 Query: 738 MNRTSRLPWDELKKRVKTIG--MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + G +RN+ IAPT +I+ I S I+P + Y + N Sbjct: 383 ----------------EKNGKMVRNAALTTIAPTGSISIIAECSSGIEPVFSYSYTRMNT 426 Query: 796 SGD-FTVVNSFLVNELK----QRDLWDEAMISDL------KYHDGSIGNIERIPDDLKKI 844 +G+ F +V+ EL+ + E + + G++ +I +PD KI Sbjct: 427 AGESFRMVHPLFKKELETVAGKLFPNPEERERRVGEVLSHVHETGTVQDIGWLPDSFTKI 486 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK-KLDFIYRQAWLMGLKTTYYL 903 TA +I I + Q+ + + S + + S K ++ AW LK Sbjct: 487 FTTALDIRWRDHILMQAAFQEHVHASISKTINMPGTSTKNEISEALLFAWRCRLKGITIY 546 Query: 904 RSRSATSV 911 R+ S Sbjct: 547 RTSSRKDA 554 >gi|260574979|ref|ZP_05842981.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sp. SW2] gi|259022984|gb|EEW26278.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodobacter sp. SW2] Length = 761 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 153/632 (24%), Positives = 252/632 (39%), Gaps = 84/632 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + RVA LA E + FY L F F+ + +GT L +CF+ Sbjct: 30 TIEDSWRRVARALAEVEAKPALWEDRFYAALEGFKFLPAGRITAGAGTGRTVTLFNCFVM 89 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+PD++ GIF +L+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 90 GTIPDNMAGIFESLKEAALTMQQGGGIGYDFSTIRPRGAEVKGVAADASGPLSFMDVWDA 149 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H DVE F++ +K D R N + I D FM V Sbjct: 150 MCRTIMSAGSRRGAMMATMRCDHPDVEAFIEAKK----DPARLRMFNLSVLITDAFMAAV 205 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + W L D KV++ A LW +++ Sbjct: 206 KADGPWELCFGD-----------------------------KVYKTCQARDLWNRIMRNT 236 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + +V + ++N C E L C LGSINL +N Sbjct: 237 YDFAEPGVIFIDRINAMNNLAYVETIAATNPCGEQPLPPY----GACLLGSINLATLVSN 292 Query: 614 NQFDYDKLAST-----IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 L +RTAVR++DNV+D + + + R IGLG+ G AL Sbjct: 293 PFAANAALDLAALDELVRTAVRMMDNVVDASRFPLPEQAVEAQAKRRIGLGVTGLADALL 352 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y S A + M+ I+ A ASV+LA+E+GA+ F + Sbjct: 353 MLRLRYGSDAAAAQTEAWMQAIARAAYLASVDLAREKGAFPLFDAEKY------------ 400 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQ 787 + T R +++ ++ G+RN+ +IAPT TI+ G S I+P + Sbjct: 401 --------LASGTMRQMDGDVRDAIRKHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFA 452 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + + D + +V+ + LW E L Sbjct: 453 YAYSRKVLQKDGSRTEEEVVDYAVR--LWRETHGD----------------APLPDYFVN 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P+ + + QKW+D + S + + S +Y AW G K R Sbjct: 495 AQTLPPLDHVWMQAAAQKWVDSSISKTINCPEDISFDDFQQVYMAAWDQGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 + T + + D + P ++ + Sbjct: 555 AVTGSVLTVSEASDKTPSEAPALVNANADGAE 586 >gi|73671045|ref|YP_307060.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro] gi|72398207|gb|AAZ72480.1| ribonucleotide reductase [Methanosarcina barkeri str. Fusaro] Length = 561 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 280/639 (43%), Gaps = 92/639 (14%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 +E++ + L + L RY + + RVA +AL + E ++ Sbjct: 5 DEIFVWEKEVELDILVSETLKARYLHEGENN----WEDICERVAEAVALTDEE----YLD 56 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 F +L+ F+ S+PTL N+GT QL++CF+ V D + IF +++ A++ K GG G Sbjct: 57 FKDLMLRKVFLPSSPTLMNAGTEFGQLAACFVIPVEDKVEEIFDSIKAAALIQKTGGGTG 116 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 D++ +R G+ + + G + +K+ N+ V Q G+R+GA L+ H D+ Sbjct: 117 FDFSKIRPEGSSNSCGDDATSGPVAVMKLFNEATEIVKQFGRRRGANMGILDISHNDILS 176 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 F+ + G+ + N + +PD FM+ V + A Sbjct: 177 FIRSKHVEGE----LSNFNISVMVPDAFMELVEA-----------------------DKA 209 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E + RQ D + ++ +++ ++ G P I F D N + +G + + Sbjct: 210 DEVWNRQTDVTVGR---------IFSEIVEGIWRNGEPGILFYDRINRDNFTPALGDISA 260 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 +N C E L CNLGSINL + + ++D L A+R LDN ID N + Sbjct: 261 TNPCGEEPLLPF----EACNLGSINLSLCVIDGKVNWDFLREVAGKAIRFLDNEIDKNAY 316 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + + + + R +GLG+MG L + +PY S EA+E+A++ ME I++ +I S +L Sbjct: 317 PVPEIETATKRTRKVGLGVMGLHDMLLKIGLPYDSQEALELAEKLMEQITWASIRESRKL 376 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A E+G++ ++ S W+ MRN+ Sbjct: 377 AVEKGSFPGYEDSTWELP--------------------------------------MRNA 398 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELK-QRDLWDEA 819 A+APT TI+ + G S I+P + +Y ++ G +F +V+ F K + D + Sbjct: 399 ALTAVAPTGTISILAGCSAGIEPVFSWVYRRTQTVGREFMLVHPFFKAHFKSKLSEADYS 458 Query: 820 MISDLKYHDGSIGNIER---IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + Y G++ ++E + ++ K++ +A +ID I+ + Q+ S + Sbjct: 459 WLLEHVYKYGTLQDVENPELVSEEEKQLFRSALDIDWKAHIDMQAAFQRHCHAGISKTIN 518 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + +D AW GLK R+ S V S Sbjct: 519 MPASAGKEDIDKALVYAWKQGLKGLTIYRTGSRQYVVLS 557 >gi|254449519|ref|ZP_05062956.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 238] gi|198263925|gb|EDY88195.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Octadecabacter antarcticus 238] Length = 753 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 151/640 (23%), Positives = 253/640 (39%), Gaps = 85/640 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ I+ + + R+A LA E + + +FY L+ F ++ + Sbjct: 15 MKYRLKEGDGTPIDISIEDTWARIAKSLASVEKDPKAWEPKFYEALNDFRYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ T+PD + GIF AL+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTDRSVTLFNCFVMGTIPDTMGGIFDALREAALTMQQGGGIGYDFSTIRPKGAVVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE+F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEDFITAK----SDAARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V + W L E R Sbjct: 191 FNMSVLITDPFMEAVKADKPWNLVWAGET-----------------------------VR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A ALW ++ + P + F D N + +V + ++N C E L Sbjct: 222 TVQARALWDSIMQSTYSHAEPGVIFIDRINTMNNLNYVETIAATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL +N D +LA + AVR++DNV+D + +E + Sbjct: 278 ACLLGSINLARLVSNPFTDTATIDDAELAELVGLAVRMMDNVVDASKFPLEAQAREAAAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL + + Y S +A + M+ I+ A +SV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMTGLRYGSEDAARQTEAWMKAIARAAYLSSVDLAREKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + D+++ ++ G+RN+ ++APT TI+ Sbjct: 398 DKYLASGNM--------------------MQMDDDVRDAIREHGIRNALLTSVAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V+ + M DLK Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVVD-------YAVKMWRDLKG------ 484 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 +L A + M + + QKWID + S + + + + +Y Sbjct: 485 -----DAELPDYFVNAQTLPAMDHVRMQAAAQKWIDSSISKTINVPEDIDFQSFKDVYMA 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 AW G K R T S ++ A Sbjct: 540 AWDQGCKGCTTYRPNEVTGSVLSVSGDTKPEVIADENAGD 579 >gi|226940518|ref|YP_002795592.1| NrdE [Laribacter hongkongensis HLHK9] gi|226715444|gb|ACO74582.1| NrdE [Laribacter hongkongensis HLHK9] Length = 947 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 154/636 (24%), Positives = 254/636 (39%), Gaps = 74/636 (11%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381 RVA LA +E E + A FY F+ +GT L +CF+ V D + Sbjct: 37 RVAAALAGQEQEPSRHAESFY-WAMEQGFIPGGRINSAAGTELSATLINCFVQPVGDSVS 95 Query: 382 -------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 GI+ AL + A + GG+G ++T +R GA + GTN ++ G + +++V + + Sbjct: 96 ETRDGKVGIYEALLQAAETMRRGGGVGYNFTRIRPKGARVKGTNSRASGPVSYMRVFDRS 155 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G R+GA L+ H D+E F+ + D + N + + D FM+ V Sbjct: 156 CETVESAGARRGAQMGVLDCDHPDIESFIHAK-----DAGDLRNFNISVGVSDAFMQAVE 210 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + W L +E E + V+R + A LW +++ + Sbjct: 211 ADGSWELVHKEE------------PDRKEFPDACQRADGKWVYRAVRARDLWNQIMESTY 258 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 + P + F N + + V+ S+N C E L + C+LGSINL + Sbjct: 259 DHAEPGVLFMSKINRDNNLSYCEVIESTNPCGEQPLP----DYGCCDLGSINLTRFVRDP 314 Query: 615 Q-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 FD+ +R +VR+LDNV+D+ + + ++ + R IGLG G AL + Sbjct: 315 FTAKAGFDFATFDKVVRQSVRMLDNVLDLTVWPLPEQQREAQSKRRIGLGFTGLGDALIM 374 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L I Y+S A E + A ASV+LA E+GA+ F + Sbjct: 375 LTIKYSSDAGRAFAARVSEAMRNSAYDASVDLAIEKGAFPLFDADQY------------- 421 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQ 787 LA + E+K R+K G+RNS+ ++IAPT TI+ S I+P + Sbjct: 422 ------LAEPHCASRLPKEIKARIKKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + D T + V + R + G + ++ + Sbjct: 476 WFYTRKKRMADGTQ-QEYRVEDHAYRVY---------RELGGDVSSLP-------DYFVS 518 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A E+ + + + +ID A S + + + + +Y +AW GLK R Sbjct: 519 ALEMSALDHMSMVAAVAPFIDTAISKTVNVPADYPFADFESLYIEAWRAGLKGITTYRPN 578 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 S S + + P DP+ P Sbjct: 579 SVLGSVLSVEPTRETPADLPPSDDPDRRIALNKTPE 614 >gi|23015529|ref|ZP_00055302.1| COG0209: Ribonucleotide reductase, alpha subunit [Magnetospirillum magnetotacticum MS-1] Length = 775 Score = 331 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 148/635 (23%), Positives = 254/635 (40%), Gaps = 83/635 (13%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + RVA LA E E F+ + F + + + +GT L +CF+ Sbjct: 29 TIEDTWRRVARSLAATEAEPAVWEQRFFESMEDFKVLPAGRIISGAGTDRKVTLFNCFVM 88 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 +PDD+ GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V + Sbjct: 89 GDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVGADASGPLSFMDVWDA 148 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + G R+GA+ A + H D+E F+D ++ + R N + + D FM+ V Sbjct: 149 MCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKR----EAGRLRMFNLSVLVTDPFMQAV 204 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ W L + ++ + A LW K++ Sbjct: 205 KEDGPWELTF-----------------------------KGVTYKSLPARELWNKIMRAT 235 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 + P + F D N + + +H++N C E L + VC LGS+NL Sbjct: 236 YSYAEPGVIFIDRINRLNNLSYCEDIHATNPCGEQPLPAY----GVCLLGSLNLARLVDR 291 Query: 614 NQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D DKL +R AVR++DNVID++ + +++ + + R IGLG+ G AL Sbjct: 292 PFEDGARLDLDKLDRLVRVAVRMMDNVIDVSNYPLDRHRHEALSKRRIGLGITGLADALI 351 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 L Y EA+ + + M I A AS ELA+E+GA+ + + G Sbjct: 352 LCGARYGGREAIRLTETWMAAIRRSAYLASAELAREKGAFPLYDAEKYLAG--------- 402 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC-GVSQSIDPSYQ 787 T + ++ + ++T G+RN+ +IAPT TI+ VS ++P + Sbjct: 403 -----------ETIQGLDSDVIEAIRTHGIRNALLTSIAPTGTISLFADNVSSGLEPVFA 451 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 Y + L++ E +SD Y + L Sbjct: 452 FTYTRGV---------------LQRDGTRREEEVSDYAYRL--FRRLRGENAPLPTYFVD 494 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 A + P + + QK++D + S + + + S +Y QA+ +G K R Sbjct: 495 ALSLTPGDHVVMQAAVQKYVDSSISKTINVPEDISFDAFKDVYTQAYELGCKGCTTYRPN 554 Query: 907 SATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 T K + +A P + P Sbjct: 555 DITGSVLEVKKEARPEDDAEPELPLEKTRTRYTDP 589 >gi|73748165|ref|YP_307404.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] gi|73659881|emb|CAI82488.1| ribonucleotide reductase [Dehalococcoides sp. CBDB1] Length = 585 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 156/635 (24%), Positives = 259/635 (40%), Gaps = 77/635 (12%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFY 343 +L RY +GS E P+ F RVA +A E A EFY Sbjct: 1 MKLSGNAKIVLEKRYLKRDGDGSITESPEDMFRRVADAVAAAENAYNQQGKAACWADEFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ F+ ++PTL N+G LSSCF+ V D + GI A+ E ++ +Y GG G Sbjct: 61 RMMTGLEFLPNSPTLLNAGRELGLLSSCFVLPVEDSVEGIAKAIGEAMIIHQYGGGTGFA 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R I + + G + + V ++ A + Q G R G A L H D+ +F+ Sbjct: 121 FDTIRPEDTPIKSGHNVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D+ + + + D F+++V + + L +P Sbjct: 181 RAK----DEGNHSANFGINIALTDSFIQKVRRGEDYELINPRT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V +SA ++ ++ +ETG P I F D N +P +G +++ Sbjct: 220 ----------GEVTGSLSASDVFYRIAQSAWETGDPGIMFIDRINKDNPTPQLGEFVTTD 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C L T S+ L DY +L I A+R LD+V+++N + I Sbjct: 270 PCGGQPLLPYESATLGTINLSLMALKEGNCFGVDYLRLGKLIAKAIRFLDDVLEVNRYPI 329 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + +++ R IGLG MGF L L I Y S +AV +AD M F++ AS ELA Sbjct: 330 PEVERAAKATRKIGLGFMGFAEMLIKLGIRYDSEQAVSLADRLMTFVNETVNKASEELAL 389 Query: 704 ERGAYSSFKGSLWDQ-GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 ERG++ +F G+++ + G P RN+ Sbjct: 390 ERGSFPAFAGNIYAKSGAKP-----------------------------------RRNAT 414 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMI 821 C+ T T + I S I P Y + V++ + G +N ++R ++ +I Sbjct: 415 CLTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHTFEETARERGFFNPVLI 474 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 L + S N IP D +++ TA +I P W I + QK D A S + Sbjct: 475 EKLLTGE-SPQNCPEIPRDYRRLLVTARDIQPEWCIRVQAAFQKHTDNAISQTVNFPKSA 533 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + + + ++ ++ +GLK R S T Sbjct: 534 TVEDIAELFLKSHELGLKGVTAYRDSSRDVQVLCT 568 >gi|86136293|ref|ZP_01054872.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. MED193] gi|85827167|gb|EAQ47363.1| ribonucleoside-diphosphate reductase, putative [Roseobacter sp. MED193] Length = 765 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 150/657 (22%), Positives = 254/657 (38%), Gaps = 84/657 (12%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ I+ + + R+A LA E +FY L F ++ + Sbjct: 15 MKYRFKEADGTPIDVTVEDSWRRIARDLARAEDNPGVWEEKFYEALEDFKYLPAGRITAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARQVTLFNCFVMGTVPDSMSGIFDMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H DVE F+ + D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDVEAFITAK----SDSARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V + W L + K++ Sbjct: 191 FNMSVLISDAFMEAVKADGSWELQF-----------------------------DGKIYH 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW K++ ++ P + F D N + ++ + ++N C E L Sbjct: 222 TVQARDLWNKIMQATYDYAEPGVIFIDRINKANNLNYIENICATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSIN+ +N + + + TAVR++DNV+D++ +E Sbjct: 278 ACLLGSINMARLVSNPFESNAELNQSAMQELVATAVRMMDNVVDVSKFPLEAQAAEAQAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +L + Y S A D + I+ A ASV+LA+E+GA+ F Sbjct: 338 RRIGLGVTGLADALLMLGLEYGSDAAARQTDRWLHAIARAAYLASVDLAKEKGAFPLFDA 397 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + +++++ ++ G+RN+ +IAPT TI+ Sbjct: 398 EAYLASGNM--------------------MNMDEDVREAIREHGIRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + Y + + D + +V + + + G+ Sbjct: 438 LYAGNVSSGIEPVFAYAYTRKVLQKDGSRTEEEVV----------DYAVQMYREKFGTDA 487 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + A + P ++ + QKWID + S + + S + +Y Q Sbjct: 488 ALPG-------YFVNAQTLPPAAHVKMQAAAQKWIDSSISKTINCPEDISFDEFKDVYMQ 540 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 AW G K R T S + D S G S+ Sbjct: 541 AWDQGCKGCTTYRPNDVTGSVLSVSESADTAPGETADAPHESDMGENGAEVVYMSEP 597 >gi|211638142|emb|CAR66768.1| ribonucleoside-diphosphate reductase 1 subunit alpha (ec 1.17.4.1 (ribonucleoside-diphosphate reductase 1 r1 subunit) (ribonucleotid reductase 1) (b1 protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 626 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 163/656 (24%), Positives = 259/656 (39%), Gaps = 57/656 (8%) Query: 289 RDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYN 344 RD F Y ++ L +Y + G E Q ++ VA L + + FY+ Sbjct: 2 RDMNFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSSYPKETRLDYIRRFYD 61 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 +S+F TP + T Q SSC L D L I G+G + Sbjct: 62 AVSTFKISLPTPIMAGVRTPTRQFSSCVLIECDDSLDSINATSSAIVKYVSQRAGIGINA 121 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R +G+ I G IPF K + +QGG R GA + WH++VE L Sbjct: 122 GRIRAVGSPIRNGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPLWHLEVESLLV 181 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY---GKEFEIA 521 L+ N G + R M+ + L +R+ + TLFSP +V L+D + EFE Sbjct: 182 LKNNRGVEGNRVRHMDYGVQLNKLMYERLIKGEDITLFSPSDVPGLYDAFFTNQDEFERL 241 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV-GVVH 580 Y YE+ ++ +++ AV L+ M+ TG +I D CN SP V Sbjct: 242 YTKYEQDSNIR----QQRLKAVDLFSLMMQERASTGRIYIQNVDHCNTHSPFDPSVAPVR 297 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLA---HFANNQFDYDKLASTIRTAVRVLDNVID 637 SNLC EI L + G I L + D+L AVR LD ++D Sbjct: 298 QSNLCLEIALPTKPLNDINDKNGEIALCTLSAFNLGAIENLDELEELAILAVRALDALLD 357 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + I AK+ R +G+G++ + L Y+ A + ++ E I ++ + A Sbjct: 358 YQDYPILAAKQGAMGRRTLGIGVINYAYYLAKHGARYSDGSANNLTHKTFEAIQYYLLKA 417 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S ELA+E+GA FK + + QG+ PID+ + N W+ L+ +K G Sbjct: 418 SNELAKEQGACPWFKETTYSQGILPIDTYKKTLD----TLTNEPLHYDWETLRSDIKQYG 473 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 +RNS ++ P+ T + I + I+P + +K++ G V D Sbjct: 474 LRNSTLSSLMPSETSSQISNATNGIEPPRGYISIKASKDGILRQVVPEYERLKG-----D 528 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 ++ + +DG + QK+IDQ+ S N Sbjct: 529 YELLWQMPGNDGYLQ--------------------------LVGIMQKFIDQSISANTNY 562 Query: 878 DEP-------SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 D +L A+ G+KT YY +R + L+ V ++ Sbjct: 563 DPARFPSGKVPMNQLLKDLLLAYKYGVKTLYYHNTRDGAEDVQDDLEEVVESADSD 618 >gi|154508381|ref|ZP_02044023.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC 17982] gi|153798015|gb|EDN80435.1| hypothetical protein ACTODO_00878 [Actinomyces odontolyticus ATCC 17982] Length = 718 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 174/742 (23%), Positives = 301/742 (40%), Gaps = 81/742 (10%) Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 + +L+ + + L + + R + + + H+++ Sbjct: 11 EEAPSPELDYHALNAQLNLYDANGHIQFDADRAAARQYFLQ-----HVNQNTVFFHDLE- 64 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 E ++EG + + + D+ L + +LG Y Y L Sbjct: 65 ---EKLKYLVDEGYYEKHVLDQYDFADIKELYKQAYAHKFRFPTFLGAFKYYTSYTLKTF 121 Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQ 367 +G R E + RVAM + A F + + + F +TPT N+G + Sbjct: 122 DGKRYLERFED---RVAMVSLYLARGDIELARSFVDEIMTGRFQPATPTFLNAGKAARGE 178 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L SCFL + D++ I + L+K GG+ T +R GA I +S GV+P Sbjct: 179 LVSCFLLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSGVVPV 238 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R ++ IPD Sbjct: 239 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPD 298 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546 + + +N LFSP D+ +YG F + + ++ ++ I+A + Sbjct: 299 ITFELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYHEMVDDGRIHKRKINARRFF 355 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594 + + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 356 QTIAEIQFESGYPYIVFEDTVNKANPI--KGRITMSNLCSEILQVSEASTYNDDLSYDHV 413 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTH 653 + CNLGS+N+ D + TI A+R L V D+ + ++ + N Sbjct: 414 GKDISCNLGSLNIAKT-----MDSSDFSKTIEMAIRGLTAVSDLSDIGSVPSIARGNAMS 468 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712 AIGLG M L H+ Y S EA++ + + F AI AS ++A+ER + F+ Sbjct: 469 HAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYFMTVLFEAIKASCKIARERGETFEGFE 528 Query: 713 GSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 S + G F I E+ ++ ++ W+ L V GM N N Sbjct: 529 ESKYASGEFFRKYIDEEWAPTTDKCRELLAASSIKVPTQADWEALAADVAKYGMYNQNLQ 588 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823 A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 589 AVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMSN--------------- 633 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + + + A+EI P +I++ + + +DQ SL L+ + + Sbjct: 634 ----------------ENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVTT 677 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + L+ Y AW G+KT YY+R Sbjct: 678 RDLNKSYIYAWKKGIKTLYYMR 699 >gi|30984467|ref|NP_851899.1| ribonucleotide reductase subunit 1 [Macacine herpesvirus 1] gi|30844281|gb|AAP41457.1| large subunit of ribonucleotide reductase [Macacine herpesvirus 1] Length = 997 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 164/655 (25%), Positives = 266/655 (40%), Gaps = 57/655 (8%) Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAV 340 GLQ Y I+ +E + R+A LA ++ + Sbjct: 348 MRLMERGLQSALKYEEFYLKSIDAWALESVPQMYTRIAGHLACHSDLAGRVVFGRDSSWL 407 Query: 341 E----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLA 394 E F+ + STP + GTR P +SSC+L + Q + Sbjct: 408 EMFTYFFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVNPQTTTTHSTLAAITQNVGPIL 467 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 SGG+G ++P LK + A N R V YLE Sbjct: 468 ARSGGIGLCLQEFNDARRGNA-------SIMPTLKALDSLVAAYNNQSLRPTGVTVYLEP 520 Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507 WH D+ L ++ ++ RR ++ +A W+PDLF KR+ +N WTLF+ Sbjct: 521 WHSDIMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAG 580 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L +G+EFE Y E + + L ++ TG P++ FKD Sbjct: 581 LSLSRFHGEEFETLYVRQEENGFG------QAMPIQDLAYAIVRAAATTGSPFVMFKDAV 634 Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N G + SNLCTEI +++ ++ VCNL S+NL FD+++L +R Sbjct: 635 NRHYIYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVR 694 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 V +++ +ID + ++ + R++G+G+ G +A + + AS E E+ Sbjct: 695 ACVLMVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHI 754 Query: 687 MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E + A+ S L + FK S++ G F + R Sbjct: 755 AEVMLLAAMQTSNALCFHGARPFHEFKHSMFSAGRF---HWEGFPDARPRYE------GE 805 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L++ + G+RNS +A+ PT A I VS+ P + N++ K G+ N+ Sbjct: 806 WERLRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTL 865 Query: 806 LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESAS 861 L+ EL++ +I L S+ + + D + TAFE D LI+ + Sbjct: 866 LLQELRETFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCA 925 Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++D +QSL LY+ E L + A+ GLKT YY + R AT+ Sbjct: 926 DRAPYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980 >gi|28804675|dbj|BAC58079.1| iibonucleotide reductase large subunit [Cercopithecine herpesvirus 1] Length = 997 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 164/655 (25%), Positives = 266/655 (40%), Gaps = 57/655 (8%) Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAV 340 GLQ Y I+ +E + R+A LA ++ + Sbjct: 348 MRLMERGLQSALKYEEFYLKSIDAWALESVPQMYTRIAGHLACHSDLAGRVVFGRDSSWL 407 Query: 341 E----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLA 394 E F+ + STP + GTR P +SSC+L + Q + Sbjct: 408 EMFTYFFTRFYGHEIVPSTPAMLGLGTRRPYMSSCYLVNPQTTTTHSTLAAITQNVGPIL 467 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 SGG+G ++P LK + A N R V YLE Sbjct: 468 ARSGGIGLCLQEFNDARRGNA-------SIMPTLKALDSLVAAYNNQSLRPTGVTVYLEP 520 Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507 WH D+ L ++ ++ RR ++ +A W+PDLF KR+ +N WTLF+ Sbjct: 521 WHSDIMAVLRMKGVLAGEESRRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFTRRAG 580 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L +G+EFE Y E + + L ++ TG P++ FKD Sbjct: 581 LSLSRFHGEEFETLYVRQEENGFG------QAMPIQDLAYAIVRAAATTGSPFVMFKDAV 634 Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N G + SNLCTEI +++ ++ VCNL S+NL FD+++L +R Sbjct: 635 NRHYIYDTQGSAIAGSNLCTEIVHPANATQSGVCNLASVNLAECVVGRTFDFNRLRDAVR 694 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 V +++ +ID + ++ + R++G+G+ G +A + + AS E E+ Sbjct: 695 ACVLMVNIMIDRTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHI 754 Query: 687 MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E + A+ S L + FK S++ G F + R Sbjct: 755 AEVMLLAAMQTSNALCFHGARPFHEFKHSMFSAGRF---HWEGFPDARPRYE------GE 805 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L++ + G+RNS +A+ PT A I VS+ P + N++ K G+ N+ Sbjct: 806 WERLRQSMMKHGLRNSQFIALMPTVASAQIADVSEGFAPLFTNMFSKVTRDGETLRPNTL 865 Query: 806 LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESAS 861 L+ EL++ +I L S+ + + D + TAFE D LI+ + Sbjct: 866 LLQELRETFSGRRLNEVIDGLDAKQWSVEQALPCLAADHPLRRFKTAFEYDQELLIDLCA 925 Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++D +QSL LY+ E L + A+ GLKT YY + R AT+ Sbjct: 926 DRAPYVDHSQSLTLYVTERADGTLPASVLVRLLVHAYKRGLKTGMYYCKVRKATN 980 >gi|253573377|ref|ZP_04850720.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] gi|251846905|gb|EES74910.1| ribonucleoside-diphosphate reductase [Paenibacillus sp. oral taxon 786 str. D14] Length = 864 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 147/644 (22%), Positives = 270/644 (41%), Gaps = 61/644 (9%) Query: 312 SRIEMPQAFFMRVAMGLALKETEKEK---RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 + + P+ + R+A +A E EK +F +L + + +G Sbjct: 86 NIEKTPEEMWDRLAKAMASVEETPEKQKEWEEKFRYILDDWKLVPGGRIAAGAGASDELT 145 Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D GI L E + GG+G + + +R A + G NG S G + Sbjct: 146 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 205 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + WH DV +F+ +++ G + + N + + Sbjct: 206 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVS 261 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD + ++ + +AD ++ +R + A +W Sbjct: 262 NAFMKAVKEDLDWDLVFPDTTYEDYNEVWDGDLDKW-----KADGRKVIHYRTVKAREIW 316 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L VCNL ++N Sbjct: 317 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMN 372 Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + + D +D+LA+T R +VR LDNVI+ + E+ +K+ R +GLG MG Sbjct: 373 LSKFYDEEKHDVAWDELATTTRYSVRFLDNVINKTPYHFEENEKNQKKERRVGLGTMGLA 432 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L+I Y SPE++E D+ FI+ A AS ++A+E+G++ +F+ + Q F + Sbjct: 433 ELMIKLNIRYGSPESLEFLDKLYGFIAKEAYLASADIAEEKGSFPAFEADKFLQSGFMKN 492 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + E + + V+T G+RN + APT + + G S I+P Sbjct: 493 MTEVYPE-----------------VGEAVRTKGIRNVTIITQAPTGSTGTMVGTSTGIEP 535 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y + + G + V ++ W + H G + L Sbjct: 536 YFAFKYYRQSRLG----FDEQFVPIAQE---WMD-------AHPG---------EPLPDY 572 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 TA ++ I + Q+W+D + S + + + +Y A+ +G K Sbjct: 573 FVTAMDLSAEDHIRVQAAIQRWVDSSISKTANCPSDFTVEDTKRLYELAFDLGCKGVTIY 632 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 R S T K + K A ++ +S Sbjct: 633 RDGSRDVQVLQTEKKEEKKEEASAQPSAAATPQPANASVQASSP 676 >gi|293193539|ref|ZP_06609809.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces odontolyticus F0309] gi|292819895|gb|EFF78897.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces odontolyticus F0309] Length = 718 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 174/746 (23%), Positives = 300/746 (40%), Gaps = 89/746 (11%) Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +L+ + + L + + + AR + + + +K Sbjct: 11 EEAPSPELDYHALNAQLNLYDANGRIQFDADRAAARQYFLQHVNQNTVFFHDLEEKL--- 67 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 ++EG + + + D+ L + +LG Y Y Sbjct: 68 ----------KYLVDEGYYEKHVLDQYDFADIKELYKQAYAHKFRFPTFLGAFKYYTSYT 117 Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R E + RVAM + A F + + + F +TPT N+G Sbjct: 118 LKTFDGKRYLERFED---RVAMVSLYLARGDIELARSFVDEIMTGRFQPATPTFLNAGKA 174 Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +L SCFL + D++ I + L+K GG+ T +R GA I +S G Sbjct: 175 ARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSG 234 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+P +K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R ++ Sbjct: 235 VVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMQFLDTKRENADEKIRIKTLSLGV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISA 542 IPD+ + +N LFSP D+ +YG F + + ++ ++ I+A Sbjct: 295 VIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYHEMVDDGRIHKRKINA 351 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------ 590 ++ + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 352 RRFFQTIAEIQFESGYPYIVFEDTVNKANPI--KGRITMSNLCSEILQVSEASTYNDDLS 409 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKS 649 + CNLGS+N+ D + TI A+R L V D+ + ++ + Sbjct: 410 YDHVGKDISCNLGSLNIAKT-----MDSPDFSKTIEMAIRGLTAVSDLSDIGSVPSIARG 464 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAY 708 N AIGLG M L H+ Y S EA++ + + F AI AS ++A+ER + Sbjct: 465 NAMSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNMYFMTVLFEAIKASCKIARERGETF 524 Query: 709 SSFKGSLWDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRN 760 F+ S + G F I E+ ++ ++ W+ L V GM N Sbjct: 525 EGFEESKYASGEFFRKYIDEEWAPTTDKCRELLAASSIKVPTQADWEALAADVAKYGMYN 584 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEA 819 N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 585 QNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMSN----------- 633 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + + + A+EI P +I++ + + +DQ SL L+ + Sbjct: 634 --------------------ENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPD 673 Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + L+ Y AW G+KT YY+R Sbjct: 674 TVTTRDLNKSYIYAWKKGIKTLYYMR 699 >gi|270307517|ref|YP_003329575.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] gi|270153409|gb|ACZ61247.1| ribonucleotide reductase, cobalamin-dependent [Dehalococcoides sp. VS] Length = 585 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 163/634 (25%), Positives = 261/634 (41%), Gaps = 75/634 (11%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFY 343 +L RY +G+ E + F RVA +A E A EFY Sbjct: 1 MKLSQNARIVLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ F F+ ++PTL N+G LSSCF+ V D + GI + E ++ +Y GG G Sbjct: 61 CMMTGFEFLPNSPTLLNAGRELGLLSSCFVLPVADSVEGISKTIGEAMVIHQYGGGTGFA 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R + + + G + + V ++ A + Q G R G A L H D+ +F+ Sbjct: 121 FDAIRPEDDPVKSGHTVAGGPVRLVGVFSEAANYIKQAGVRCGCNSASLPVNHPDILKFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D+ + + + D F+++V A + L +P Sbjct: 181 RAK----DEGNHSANFGINIALTDSFIQKVRLGADYELVNPRT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V +SA ++ ++ +ETG P I F D N +P +G +++ Sbjct: 220 ----------GRVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTD 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C L T S LL + DY +L I AVR LD+V+++N + Sbjct: 270 PCGGQPLLPYESATLGTINLSGMLLKEGNCCRVDYPRLGGLITKAVRFLDDVLEVNRYPT 329 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + +K+ R IGLG MGF L L I Y S +AV ADE M F+ A A+ ELA Sbjct: 330 AEVEKAAKATRKIGLGFMGFAEMLIKLGIRYDSADAVSAADELMAFVKEAACQATEELAL 389 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 ERGA+ +F GS++ A+ R RN+ C Sbjct: 390 ERGAFPAFAGSIYA---------KRGAKPR-------------------------RNATC 415 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMIS 822 + T T + I S I P Y + V++ + G +N ++R + A+I Sbjct: 416 LTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIE 475 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 L + S N IP+D +++ TA +I P W I + QK+ D A S + S Sbjct: 476 KLLTGE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPANAS 534 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + + ++ +A +GLK R S S T Sbjct: 535 VEDIADLFLKAHELGLKGVTAYRDSSRESQVLCT 568 >gi|144899535|emb|CAM76399.1| Ribonucleoside-diphosphate reductase alpha subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 772 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 153/649 (23%), Positives = 265/649 (40%), Gaps = 84/649 (12%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ + + + + R+A LA E + F + L+ F F+ + + Sbjct: 14 MKYRLKDADGTPVDKTIEETWGRIAKALAQAEKDPALWEARFADALADFKFLPAGRIISG 73 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT + +CF+ +PDD+ GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 74 AGTDRRVTMFNCFVMGDIPDDMAGIFEHLKEAALTMQQGGGIGYDFSTLRPKGAPVKGVG 133 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E F+D + + R Sbjct: 134 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIDAKH----EAGRLRM 189 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + I D FM+ V + W L V++ Sbjct: 190 FNLSVLITDPFMEAVKHDQAWELVFG-----------------------------GVVYK 220 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A ALW K++ + P + F D N + + +H++N C E L Sbjct: 221 SLPARALWDKIMHATYAYAEPGVIFIDRINRLNNLHYCETIHATNPCGEQPLPPY----G 276 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 VC LGS+NL ++ D DKL +R AVR++DNVID++ +++ + + Sbjct: 277 VCLLGSVNLAKLVSDPFEAKARLDMDKLRDLVRVAVRMMDNVIDVSRFPLDRHENEAKSK 336 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL L + Y +A+ + +E M+ + A ASVELAQE+GA+ ++ Sbjct: 337 RRIGLGVTGLADALILCNARYGGKDALRLTEEWMDALRREAYLASVELAQEKGAFPLYEK 396 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + G T + +++ + G+RN+ +IAPT TI+ Sbjct: 397 EPYLAG--------------------ETIQALDADVQAAIAEHGIRNALLTSIAPTGTIS 436 Query: 774 NIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 VS ++P + Y ++ L++ E +SD Y + Sbjct: 437 LFADNVSSGLEPVFSFTYTRAV---------------LQKDGTRREEEVSDYAYRLFRLL 481 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 E P L A ++P + + QK+ID + S + + E S + +Y Q Sbjct: 482 KGENAP--LPPAFVDAQRLNPTEHVVMQAAVQKYIDSSISKTINVPESISFEDFRHVYEQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 A+ G K R T + K + P + Sbjct: 540 AYASGCKGCTTYRPNDITGSVLTVKKEEPKAEDQDQPQLPLGKPAARPE 588 >gi|302879218|ref|YP_003847782.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Gallionella capsiferriformans ES-2] gi|302582007|gb|ADL56018.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Gallionella capsiferriformans ES-2] Length = 942 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 154/638 (24%), Positives = 262/638 (41%), Gaps = 74/638 (11%) Query: 323 RVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV---- 376 RVA GLAL E ++ E + L F+ + +G L +CF+ V Sbjct: 28 RVARGLALAEKPDQRAHWEEAFYLAQENGFVPAGRINSAAGLAIQATLINCFVQPVGDAI 87 Query: 377 ---PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D GI+ ALQ+ A + GG+G D++ +R GA + GTN ++ G I +++V + Sbjct: 88 SGITDGKPGIYDALQQAAETMRRGGGVGYDFSTIRPEGALVKGTNSRASGPISYMRVFDR 147 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + V G R+GA L H D+E+F+ + D+ + N + + D M+ V Sbjct: 148 SCETVESAGARRGAQMGVLRCDHPDIEKFISAK-----DKGDLRNFNISVGVTDALMQAV 202 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 ++ + L E + G ++R++ A LWR+++ Sbjct: 203 EADSDFELVHTAEPAAALRDAG-----------ATQRADGRWIYRRVRATDLWRQIIEST 251 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN 613 ++ P + F D N + + V+ ++N C E L C LGSINL N Sbjct: 252 YDHAEPGVLFIDLMNRDNNLSYCEVIEATNPCAEQPLPPY----GCCCLGSINLTRMVKN 307 Query: 614 NQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 FDY+ I+ AVR+LDNV+D+ + + + R IGLG G AL Sbjct: 308 PFSTHAGFDYEPFKQLIKVAVRMLDNVLDVTAWPLPEQQLEAQNKRRIGLGYTGLGDALV 367 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y + EA A + + A +AS+EL++ERGA+ + Sbjct: 368 MLGLRYDTEEARAFAADITRIMRDEAYAASIELSKERGAFPLLDAEHY------------ 415 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSY 786 LA R + DE+K ++ G+RNS+ ++IAPT TI+ S I+P++ Sbjct: 416 -------LAAPRFASRLPDEMKNHIREYGIRNSHLLSIAPTGTISLAFADNASNGIEPAF 468 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 Y + D T + + + K G + ++ + Sbjct: 469 SWFYTRKKRMMDGTSKDYSVE----------DHAWRVFKKQGGDVSHLP-------EAFV 511 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +A EI + ++ + +ID + S + + + + +Y +AW GLK R Sbjct: 512 SALEIPALDHMKMCAAVAPYIDTSISKTVNVPADYPFEDFKNLYTEAWRAGLKGLATYRP 571 Query: 906 RSATSVEKS-TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 S S T + G++ V D + P Sbjct: 572 NSVLGSVLSITPEPKKGEIPQDFVFDQDRRIELEAAPK 609 >gi|284992284|ref|YP_003410838.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geodermatophilus obscurus DSM 43160] gi|284065529|gb|ADB76467.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Geodermatophilus obscurus DSM 43160] Length = 951 Score = 329 bits (843), Expect = 2e-87, Method: Composition-based stats. Identities = 136/633 (21%), Positives = 241/633 (38%), Gaps = 30/633 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G E + E E +L +F ++P FN GT Q+S+CF+ V D++ I Sbjct: 117 GYFASEGDAEVFEHELTWMLMHQYFSFNSPVWFNVGTNAPQQVSACFILAVDDEMDSILN 176 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 177 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 235 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + V + Sbjct: 236 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGYDMDLGGKDITSVQ------YQNA 289 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + D + + E E R R + V + A L+RK+ +E P I + Sbjct: 290 NNSVRVSDEFMRAVEDGDEFGLRA--RLDGSVIETVDAKTLFRKVTRAAWECADPGIQYD 347 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 D N G +++SN C+E S + + CNL S+NL+ ++ FD Sbjct: 348 DTINDWHTNPETGRINASNPCSEYM----SLDNSSCNLASLNLMKFLEDDGTFDSRNFVK 403 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I + ++ +R +G+G + L Y S +A Sbjct: 404 AVELVITAMDISICFADFPTDPIGETTRAYRQLGIGYANLGALLMATGHAYDSRGGQTLA 463 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739 ++ A S ELA GAY F + +R D+ + Sbjct: 464 AAITSLMTGTAYRRSAELAGIVGAYEGFARNADAHARVMRKHAAANDAIRPVGADDADVL 523 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 + + W E + G RN+ +APT TI + + I+P + + Y K G Sbjct: 524 KAATAQWQECLELGADFGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKYKKLVGGG 583 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L+ DE + + ++Y G + + + + ++ A I Sbjct: 584 SMQIVNQTVPRALRSLGYQDEQIEAIVEYISEHGHVVDAPSLRPEHYEVFDCAMGERAIS 643 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q +I A S + + E + + ++ IY Q W +GLK R Sbjct: 644 PMGHVRMMAAVQPFISGAISKTVNMPETATVEDVENIYFQGWKLGLKALAIYRDNCKVGQ 703 Query: 912 EKS--TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 S K D K+ A S +P Sbjct: 704 PLSDAKAKKADTKVEAAAPATALSHPVRKRLPK 736 >gi|150020504|ref|YP_001305858.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho melanesiensis BI429] gi|149793025|gb|ABR30473.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho melanesiensis BI429] Length = 833 Score = 329 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 181/677 (26%), Positives = 290/677 (42%), Gaps = 94/677 (13%) Query: 294 EYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEKEKR------------A 339 +IL +RYF NG +E RVA +A E + Sbjct: 15 SKNAYKILTERYFFKNLNGKFLETKWDDVCRRVARVVATAELVNNPKLSNKKLDEIKELE 74 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGT---------------------------RHPQLSSCF 372 F+ +L + F+ ++PTLFN+G LS+CF Sbjct: 75 ETFFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIEEMTLEDYEEIYKTRNHLHMLSACF 134 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + + D + IF A++E A++ K GG+G++++ +R G+ + GT+G++ G + F+ V N Sbjct: 135 VVPIEDSIDEIFEAVKEYALITKAGGGIGSNFSNLRPKGSFVAGTHGQASGPVSFMHVYN 194 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 V QG KR+GA+ L H D+EEF+ K D + N + IP Sbjct: 195 SAIAVVEQGYKRRGALMGILNINHPDIEEFI-TAKENNDGEKILKYFNISVGIP------ 247 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA-DRGEIKVFRKISAVALWRKMLT 551 KEF YEN E + K RKI A + +++ Sbjct: 248 --------------------FDKKEFLKIYENDEEITLTHPKFKETRKIKARHILKRIAK 287 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 ++TG P + F N P + S+N C EI L CNLGSI++ Sbjct: 288 NAWKTGDPGLAFLHEMNKYYPLYPEKEIISTNPCGEIGLAPY----EACNLGSIDVSKFV 343 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 NNQ D+ L +T+R VR LDNVID+N +EK K+ R +GLG+MGF L+ L+ Sbjct: 344 ENNQIDWKALETTVRLTVRFLDNVIDVNVFPLEKITKAVKESRRLGLGIMGFADLLYKLN 403 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 +PY S + EIA M FI+ H S +L +E+G + F+ S + E Sbjct: 404 VPYNSEKGREIAANLMGFIALHGHDESNKLGREKGNFPLFEKSRF-----------FKEE 452 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 AM + + + G RN + IAPT +I+NI S ++P++ YV Sbjct: 453 NFVPFAMGMSKYDDEIKEVMKEAKKGKRNVAVLTIAPTGSISNIADTSSGLEPNFLLAYV 512 Query: 792 K-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + +N L +L L E + L GS+ ++ +P+++KK+ Sbjct: 513 RYMNKHDGGKEALFYINKVLEQKLDPITL--EKIKEKLIE-KGSLQELD-VPEEIKKVFV 568 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 TA +I PM + Q+++D S + + + + + IY +A+ + ++ R Sbjct: 569 TAMDISPMDHLLMQDAFQRYVDNNISKTINMPSNATEEDVLNIYLEAFKLNVRGLTIYRD 628 Query: 906 RSATSVEKSTLKGVDGK 922 S + + K V K Sbjct: 629 GSLQTQVLTAAKHVKTK 645 >gi|57234945|ref|YP_180992.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] gi|57225393|gb|AAW40450.1| ribonucleotide reductase [Dehalococcoides ethenogenes 195] Length = 585 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 162/627 (25%), Positives = 261/627 (41%), Gaps = 75/627 (11%) Query: 291 FAFEYLGLQILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKE------KRAVEFY 343 +L RY +G+ E + F RVA +A E A EFY Sbjct: 1 MKLSQNARIVLEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFY 60 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ F F+ ++PTL N+G LSSCF+ V D + GI A+ E ++ +Y GG G Sbjct: 61 GMMTGFEFLPNSPTLLNAGRELGLLSSCFVLPVADSVAGIAKAVGEAMVIHQYGGGTGFA 120 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R + + + G + + V ++ + Q G R G A L H D+ +F+ Sbjct: 121 FDAIRPEDDPVKSGHKVAGGPVRLVGVFSEAVNYIKQAGVRCGCNSASLPVNHPDILKFI 180 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 + D+ + + + D F+++V + + L +P Sbjct: 181 RAK----DEGSHSANFGINIALTDDFIRKVRRGEDYELVNPRT----------------- 219 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V +SA ++ ++ +ETG P I F D N +P +G +++ Sbjct: 220 ----------GRVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTD 269 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 C L T S LL + DY +L I AVR LD+V+++N + Sbjct: 270 PCGGQPLLPYESATLGTINLSGMLLKEGNCCRVDYPRLGGLIAKAVRFLDDVLEVNRYPS 329 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + +K+ R IGLG MGF L L I Y S EAV ADE M F+ A A+ ELA Sbjct: 330 AEVEKAARATRKIGLGFMGFAEMLIKLGIRYDSAEAVSAADELMAFVKEAACQATEELAL 389 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 ERGA+ +F GS++ Q A+ R RN+ C Sbjct: 390 ERGAFPAFAGSIYAQ---------KGAKPR-------------------------RNATC 415 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMIS 822 + T T + I S I P Y + V++ + G +N ++R + A+I Sbjct: 416 LTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFSPALIE 475 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 L + S N IP+D +++ TA +I P W I + QK+ D A S + + S Sbjct: 476 KLLTGE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNFPADAS 534 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + + ++ +A +GLK R S Sbjct: 535 VEDIADLFLKAHELGLKGVTAYRDSSR 561 >gi|325955615|ref|YP_004239275.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa DSM 16922] gi|323438233|gb|ADX68697.1| ribonucleoside-diphosphate reductase, alpha chain [Weeksella virosa DSM 16922] Length = 562 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 164/623 (26%), Positives = 257/623 (41%), Gaps = 112/623 (17%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 QIL Y L E + R+ A + + E F ++ S+P Sbjct: 27 QILNRGYLLKG-----ETVEGAIDRITAAAARRLYKPE-MQESFKEMIERGWMSLSSPIW 80 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF +PD + GI L E M K GG + +R G+ + N Sbjct: 81 ANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELRERGSAVTD-N 139 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKS G + F+K+ + ++QGG R+GA AYL+ H D+EEFL ++ + Sbjct: 140 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHSDIEEFLKIKSIG----NPIQN 195 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + +PD +M+ + Sbjct: 196 LFYGVCVPDYWMQEMIDGD----------------------------------------- 214 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEITLNSSSE 595 + +W K+L E G P+I F D N PQ + +++SNLC+EI L SS + Sbjct: 215 -VEKRNIWAKVLESRQEKGLPYIFFSDNVNKNKPQVYKDLNMRINASNLCSEIMLPSSRD 273 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649 E+ +C L S+NL +D K +R A+ LD V+ E + Sbjct: 274 ESFICCLSSMNLE------LYDEWKDTEAVRLAIFFLDAVLQEFIEKTEGNYYLTAANRF 327 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 HRA+GLG++G+ S L IP+ EA E + I A AS ELA+ G Sbjct: 328 AKRHRALGLGVLGWHSYLQKNMIPFEGMEAKLRTTEIFKHIQSKADKASEELARIYGEPE 387 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 KG G RN+ +AIAPT Sbjct: 388 LLKG------------------------------------------YGRRNTTTLAIAPT 405 Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + I G S I+P N Y G+F N +L L+++ + +E + + + Sbjct: 406 TSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLEEKGMDNEDVWRGIMLNG 465 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 GS+ +I + ++ K + T EI + +++ A+ RQK++DQ+QSLNL + K+++ Sbjct: 466 GSVQHIAELTENEKAVFKTFKEISQLEIVQQAAIRQKFVDQSQSLNLNIPANLPVKEVNR 525 Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910 + +AW +G+KT YY RS+S Sbjct: 526 LMIEAWQLGVKTLYYQRSQSVAK 548 >gi|284032582|ref|YP_003382513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Kribbella flavida DSM 17836] gi|283811875|gb|ADB33714.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Kribbella flavida DSM 17836] Length = 960 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 126/639 (19%), Positives = 235/639 (36%), Gaps = 36/639 (5%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E E +L +F ++P FN GT Q+S+CF+ V D + I Sbjct: 121 GYFATAADAEVFEHELTWMLLHQYFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILN 180 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + + G + G + F++ A+ +A + G R Sbjct: 181 WYKEEGLIFKGGSGAGLNLSRIRSSKELLQSSGGTASGPVSFMRGADASAGTIKSGGATR 240 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + Sbjct: 241 RAAKMVVLDVDHPDIEEFVETKMREEDKIRVLRDAGYDMDL------GGRDITSVQYQNA 294 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + D + + E E R R + V + A L+ K+ + P + + Sbjct: 295 NNSVRVTDEFMRAVEEKGEFGLRA--RLDGSVIETVDARELFDKISHAAWACADPGLQYD 352 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 D N G + +SN C+E + + CNL S+NL+ ++ FD +K Sbjct: 353 DTINDWHTTPETGRITASNPCSEYMH----LDNSSCNLASLNLMKFLRDDDLFDSEKFVK 408 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E ++ +R +G+G + L Y S +A Sbjct: 409 AVELIITAMDISICFADFPTEAIGETTRAYRQLGIGYANLGALLMATGHAYDSDGGRALA 468 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 ++ + S ELA G Y F+ + +R + + Sbjct: 469 GAITSLMTGTSYKRSAELAGIVGPYDGFERNKDAHTRVMRKHAAANDAIRTIHEIDKDVQ 528 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 + + W ++ G RN+ +APT TI + + I+P + + + K G Sbjct: 529 KAATAAWQDVLTLGAKNGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 588 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF---EI 851 +VN + L+ + E I + + G + + + + +I TA I Sbjct: 589 SMQIVNQTVPRALRLHG-YTEETIEAIVEYISEHGHVVDAPGLKPEHYEIFDTAMGERAI 647 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA-- 908 PM + + Q ++ A S + L E + +++ +Y Q W +GLK R Sbjct: 648 KPMGHVRMMAAAQPFLSGAISKTVNLPETATVEEIADVYFQGWKLGLKALAVYRDNCKVG 707 Query: 909 -----TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 +K+T + + V P PS Sbjct: 708 QPLADAKAKKATEAVAEPVVEKVIEYRPTRKRLPKSRPS 746 >gi|21228932|ref|NP_634854.1| ribonucleoside-diphosphate [Methanosarcina mazei Go1] gi|20907466|gb|AAM32526.1| Ribonucleoside-diphosphate [Methanosarcina mazei Go1] Length = 553 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 151/626 (24%), Positives = 263/626 (42%), Gaps = 92/626 (14%) Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 F+ L ++ L RY + RVA +AL E EF +++ S F Sbjct: 7 EFDLLAIETLKSRYLQEGEKD----WEDVCKRVAKAIALNRGEYT----EFLDIILSKAF 58 Query: 352 MCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 + S+PTL N+GT QLS+CF+ V D + IF +++ A++ K GG G +++ +R G Sbjct: 59 IPSSPTLMNAGTPSGQLSACFVIPVEDGIEKIFDSVKTAALIQKTGGGTGFNFSKIRPDG 118 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + +++ N+ V GKR+GA L+ H D+ F+ ++ G Sbjct: 119 SVTVSGVGTASGPVALMRLFNEATEIVKHFGKRRGANMGILDISHNDIISFIRAKRTEG- 177 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 + N + + D FM + + Sbjct: 178 ---VLSNFNISVMLTDSFMSLADEG----------------------------RMDEVWN 206 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 E ++ +++ ++ G P + F D N + +G + ++N C E L Sbjct: 207 TETGT----KIGEIFSEIVEGIWRNGEPGVLFYDHINRDNFTPALGDISATNPCGEEPLL 262 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 CNLGSINL + + D L +R AVR LDN ID+N + + + +K+ Sbjct: 263 PF----ESCNLGSINLSILVEEGKVNRDSLREAVRKAVRFLDNEIDVNVYPVPEIEKATK 318 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R IGLG+MGF L L +PY S EA+ +A++ M I+ AI S +LA E+G + + Sbjct: 319 KTRKIGLGVMGFHDMLLKLGLPYDSEEALRLAEKLMGQINRAAIRESEKLAAEKGPFPEY 378 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + S+W +RN+ AIAPT T Sbjct: 379 ENSIW--------------------------------------EFPVRNATLTAIAPTGT 400 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELK-QRDLWDEAMISDLKYHDG 829 I+ + G S I+P + +Y ++ ++G +F +V+ K + D + + Y G Sbjct: 401 ISILAGCSAGIEPVFSWVYRRARIAGKEFMLVHPLFETHFKQKLSKPDYNRLLEHVYAHG 460 Query: 830 SIGNIER---IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885 ++ +I + ++ K + +A +I+ I+ + Q+ S + + + + + Sbjct: 461 TLQDITDSKIVSEEEKGLFRSALDINWKTHIDIQAAFQRHCHAGISKTINMPVDAGKEDI 520 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSV 911 AW GLK R+ S V Sbjct: 521 GKALIYAWKQGLKGLTIYRTGSRQHV 546 >gi|315605372|ref|ZP_07880415.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 180 str. F0310] gi|315312941|gb|EFU61015.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 180 str. F0310] Length = 718 Score = 327 bits (839), Expect = 5e-87, Method: Composition-based stats. Identities = 174/746 (23%), Positives = 301/746 (40%), Gaps = 89/746 (11%) Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +L+ + + L + + + + AR + + + +K Sbjct: 11 EEAPSPELDYHALNAQLNLYDADGRIQFDADRAAARQYFLQHVNQNTVFFHDLEEKL--- 67 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 ++EG + + + D+ L + +LG Y Y Sbjct: 68 ----------KYLVDEGYYEKHVLDQYDFADIKELYKQAYAHKFRFPTFLGAFKYYTSYT 117 Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R E + RVAM + A +F + + + F +TPT N+G Sbjct: 118 LKTFDGKRYLERFED---RVAMVSLYLARGDIELARQFVDEIMTGRFQPATPTFLNAGKA 174 Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +L SCFL + D++ I + L+K GG+ T +R GA I +S G Sbjct: 175 ARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALQLTNLRESGAPIKKIQNQSSG 234 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 235 VVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISA 542 IPD+ + +N LFSP D+ +YG F + + ++ ++ I+A Sbjct: 295 VIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYHEMVDDGRIHKRKINA 351 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------ 590 ++ + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 352 RRFFQTIAEIQFESGYPYIVFEDTVNAANPI--KGRITMSNLCSEILQVSEASTYNDDLS 409 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKS 649 + + CNLGS+N+ D + TI TA+R L V D+ + + + Sbjct: 410 YAHVGKDISCNLGSLNIAKT-----MDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARG 464 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAY 708 N AIGLG M L H+ Y S EA++ + + + AI AS +A+ER + Sbjct: 465 NAMSHAIGLGQMNLHGYLAREHVYYGSEEALDFTNIYFMTVLYEAIKASCTIARERGERF 524 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRN 760 F+ S + G F I E + +++ ++ W+ L V GM N Sbjct: 525 EGFEDSTYASGEFFRKYIDEAWEPTTDKCRELLAASSIHVPTQQDWEALAADVARYGMYN 584 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEA 819 N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 585 QNLQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMSN----------- 633 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + + + A+EI P +I+ + + +DQ SL L+ + Sbjct: 634 --------------------ENLQYYQDAYEIGPEKIIDIYAVATQHVDQGLSLTLFYPD 673 Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + L+ Y AW G+KT YY+R Sbjct: 674 TVTTRDLNKSYIYAWRKGIKTLYYMR 699 >gi|217076775|ref|YP_002334491.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho africanus TCF52B] gi|217036628|gb|ACJ75150.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermosipho africanus TCF52B] Length = 838 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 178/696 (25%), Positives = 299/696 (42%), Gaps = 103/696 (14%) Query: 282 ANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKRA 339 + +K D +IL +RYF+ +G+ +E + RVA +A E + Sbjct: 3 EDIIKRWLDVEPSKNAYKILSERYFIKDISGNFLENKWEDVCRRVARVVATSELVNNPQV 62 Query: 340 VE----------------FYNLLSSFHFMCSTPTLFNSGT-------------------- 363 + F+ +L + F+ ++PTLFN+G Sbjct: 63 KKMDDAKKLEIIKETEETFFKMLKARIFIPNSPTLFNAGMGVRHELLWKPIENMTLSDYQ 122 Query: 364 -------RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 LS+CF+ V D + GIF A++E A++ K GG+G++++ +R G+ + G Sbjct: 123 EIYNTRNHLHMLSACFVVPVDDSINGIFEAVKEYALITKAGGGIGSNFSSLRPKGSFVAG 182 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 T+G++ G + F+ V N V QG KR+GA+ L H D+EEF+ K D + Sbjct: 183 THGQASGPVSFMHVFNSAIGVVEQGYKRRGALMGILNINHPDIEEFI-TAKENNDGEKVL 241 Query: 477 HDMNTANWIP---DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 N + IP ++ ++ L P E Y Sbjct: 242 KYFNISVGIPFDKKELLRLYEEDGEIELSHPKFT-----------EKRY----------- 279 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 I A + +++ ++TG P + F N P + S+N C EI L Sbjct: 280 ------IKARDIIKQIAENAWKTGDPGLAFLHEMNKYYPLYPEMKIISTNPCGEIGLAPY 333 Query: 594 SEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 CNLGSI++ ++ Q D+D L T+R AVR LDNVID+N +EK + Sbjct: 334 ----EACNLGSIDVAKFVTDDGQVDWDALEDTVRLAVRFLDNVIDVNVFPLEKITNAVRN 389 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R +GLG+MGF L+ L IPY S E + A + M F++ H S +L +E+G++ F+ Sbjct: 390 SRRLGLGIMGFADLLYKLDIPYNSEEGRQFAADLMGFMALHGHDESNKLGREKGSFPLFE 449 Query: 713 GSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 S + E AM + + R G RN + IAPT +I Sbjct: 450 KSKF-----------FKEEEFVPFAMGMSKYDEDIKKVMRESKKGKRNVAVLTIAPTGSI 498 Query: 773 ANICGVSQSIDPSYQNLYVK-----SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 +NI S ++P++ YV+ VN L +L + L E + L Sbjct: 499 SNIADTSSGLEPNFLLAYVRYMNKHDGTKESLFYVNKVLEKKLDPKIL--EKIKEKLIE- 555 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 GS+ +++ +P+++KK+ TA +I PM + Q+++D S + + + + + + Sbjct: 556 KGSLQDLD-VPEEIKKVFVTAMDISPMVHLLMQDAFQRYVDNNISKTINMPNNATKEDIL 614 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 IY +A + ++ R S + ++ K V K Sbjct: 615 NIYLEALKLNVRGLTIYRDGSLQTQVLTSAKHVKTK 650 >gi|256422446|ref|YP_003123099.1| ribonucleotide-diphosphate reductase subunit alpha [Chitinophaga pinensis DSM 2588] gi|256037354|gb|ACU60898.1| ribonucleoside-diphosphate reductase, alpha chain [Chitinophaga pinensis DSM 2588] Length = 565 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 155/623 (24%), Positives = 256/623 (41%), Gaps = 112/623 (17%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 QIL Y L E + R+ A + + E + F ++ S+P Sbjct: 30 QILNRGYLLKG-----ETVEGAIDRICTAAAQRLYKPELK-EAFVEMIERGWMSLSSPIW 83 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF +PD++ GI L E M K GG + +R G+ + N Sbjct: 84 ANMGTERGLPISCFNVHIPDNIEGITHKLGEVIMQTKIGGGTSAYFGGLRARGSAVTD-N 142 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKS G + F+++ + ++QGG R+GA AY++ H D++EFL ++ D + Sbjct: 143 GKSSGAVSFMRLFDTAMDTISQGGVRRGAFAAYMDIDHDDIQEFLSIK----DIGHPIQN 198 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + +PD +M+ + Sbjct: 199 LFYGVCVPDYWMQDMIDGD----------------------------------------- 217 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSE 595 + +W K+L + G P++ F D N PQ + +++SNLC+EI L S+ + Sbjct: 218 -MEKREIWAKVLESRQQKGLPYLFFTDNVNRNKPQVYKDLNLAINASNLCSEIMLPSTED 276 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649 E+ +C L S+NL +D K ++ A LD V+ E + Sbjct: 277 ESFICCLSSMNLE------LYDEWKDTDAVKLATFFLDAVLQEFIVKTEGNHFLAAANRF 330 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 HRA+GLG++G+ S L I + +A ++ + I A A+ ELA G Sbjct: 331 AKRHRALGLGVLGWHSYLQKNMIAFEGMQAKQLTSIIFKDIRDKAEKATKELAWIYGEPE 390 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 KG G RN+ MAIAPT Sbjct: 391 VLKG------------------------------------------YGRRNTTLMAIAPT 408 Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + I G S I+P N + G+F N +L L+Q+ + +E + + Sbjct: 409 TSSSAILGQTSPGIEPFSSNYFKAGLSKGNFMRKNKYLKALLEQKGIDNEDTWRSIMLNH 468 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 GS+ ++E + + K + T EI + +++ A+ RQ +DQAQSLNL + K+++ Sbjct: 469 GSVQHLEELTEHEKDVFKTFKEISQLEIVQQAAIRQTHVDQAQSLNLNIPSNLPVKEVNR 528 Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910 + +AW +G+KT YY RS+S + Sbjct: 529 LLIEAWKLGVKTLYYQRSQSVSK 551 >gi|261408340|ref|YP_003244581.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. Y412MC10] gi|261284803|gb|ACX66774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. Y412MC10] Length = 883 Score = 327 bits (837), Expect = 8e-87, Method: Composition-based stats. Identities = 144/643 (22%), Positives = 262/643 (40%), Gaps = 61/643 (9%) Query: 312 SRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 + + P+ + R+A ++ E E + +F +L + + +G Sbjct: 83 TIEKTPEEMWDRLAAAMSSVEATPELQEEWRGKFREILDDWKLVPGGRIAAGAGASDELT 142 Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D GI L E + GG+G + + +R A + G NG S G + Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + WH DVE+F+ +++ G + + N + + Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMMNDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD +D ++ R I ++ + A +W Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPDYDELWDGDLDKWKKAGR-----RIIPYKTVKAREVW 313 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L VCNL ++N Sbjct: 314 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMN 369 Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + D +D+LA+T R +VR LDNVID + E+ + + R +GLG MG Sbjct: 370 LSKFYDEANHDVAWDELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGLA 429 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L+I Y SPE++E D+ FI+ A AS ++A+E+G++ +F L+ Q F + Sbjct: 430 ELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGFMKN 489 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + E + + V+ G RN + APT + + G S I+P Sbjct: 490 MAEVYPE-----------------VAEAVRKKGARNVTVITQAPTGSTGTMVGTSTGIEP 532 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y + + G +DE + + S ++L Sbjct: 533 YFAFKYFRQSRLG------------------FDEQFVPIAQDWLDSHPG-----EELPDY 569 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 + TA + I + Q+W+D + S + + + +Y A+ +G K Sbjct: 570 YVTAMSLSAEDHIRVQAAIQRWVDSSISKTANCPSDFTVEDTKRLYELAFDLGCKGVTIY 629 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 R S T K D A + ++ + Sbjct: 630 RDGSRDVQVLQTEKKEDKAAEATTASTAEAALEQSAAGQAAEE 672 >gi|164688727|ref|ZP_02212755.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM 16795] gi|164602203|gb|EDQ95668.1| hypothetical protein CLOBAR_02374 [Clostridium bartlettii DSM 16795] Length = 698 Score = 326 bits (836), Expect = 9e-87, Method: Composition-based stats. Identities = 170/704 (24%), Positives = 293/704 (41%), Gaps = 69/704 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + L + +E ++ + + + + + + ++ + Sbjct: 25 KEALKSYLEDYIEPKMKKFDNL-NDRLNYLVENDYYSKEILDLYDQYVIDVIYDFIRAKN 83 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 Y+ Y Y L N +E + + VA+ L E + A + L Sbjct: 84 FKFQSYMSASKFYQNYALKSNDGEEILENYEDKVLIVALTLGNGEPK---LAKDIAEKLI 140 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + F +TPT N+G ++ SCFL V D GI A+ L+K GG+ + T Sbjct: 141 NQEFQPATPTFLNAGRARGGKMVSCFLVNVEDSCEGISYAVSSANHLSKIGGGVALNLTR 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G G + GV+ K+ + NQ G R+GA YL H D E LD + Sbjct: 201 LRASGESIKGIKGAAGGVMGVAKLLEQSFSYFNQMGARQGAGAVYLNVLHPDFETLLDSK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD FM+ +N F P + + ++ E Y+ Sbjct: 261 KINADEKIRLTTLSIGAIIPDKFMELAEKNEKCYAFYPHSIYQKYGVHLDG-IKMDEWYD 319 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + A+ EI+ ++I+ L ++ E+G+P++ F D N + + VG++ SNLC Sbjct: 320 KLANDDEIEK-KEINPRELLTRIAQTQQESGYPYVVFIDSANEQHTLKDVGMIKMSNLCC 378 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + + CNLGS+N+ D + TI A+R L Sbjct: 379 EIFQYQTPSDIKGYGQVSDWGQDISCNLGSLNIANVM-----DNKDIEKTIDVAIRALTY 433 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D N + KK N + +IGLG M L I Y S E E AD + ++ Sbjct: 434 VSDNTNIEEVPTIKKGNDSSHSIGLGAMNLHGYLVREDIIYTSKEGREFADVFFAMMRYY 493 Query: 694 AISASVELAQER-GAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSR 743 AI S+ +A E+ ++ F+ S + +G D + +V +N ++ Sbjct: 494 AIKTSMNIAIEKGETFNGFEKSEYAKGPESELFKKYCTKDFLPTSEKVSKLFEGINIPTK 553 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W EL ++VK G+ N+ AIAPT +I+ + + S+ P + + V++ Sbjct: 554 EDWTELLQQVKNNGIYNAYLTAIAPTQSISYVQNSTSSVMPITEQIEVRTYGDSTTIYPM 613 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 FL +E M+ + +A+ ID + LI+ + Sbjct: 614 PFLT---------NENML----------------------YYQSAYRIDMLDLIDMVAII 642 Query: 864 QKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q IDQ S L++ + + + + Y A GLK+ YY R++ Sbjct: 643 QGHIDQGISTTLFVTDDKTTRDIARYYIYAHKKGLKSLYYTRTK 686 >gi|89053442|ref|YP_508893.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1] gi|88862991|gb|ABD53868.1| ribonucleotide reductase large subunit [Jannaschia sp. CCS1] Length = 757 Score = 326 bits (836), Expect = 1e-86, Method: Composition-based stats. Identities = 150/650 (23%), Positives = 254/650 (39%), Gaps = 85/650 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ I+ + + R+A LA E + FY L F ++ + + Sbjct: 15 MKYRLKEADGTAIDGSVEDTWRRIAKALAAVEDDSATWEETFYTALEDFKYLPAGRIVAG 74 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ TVPD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTGRSVTLFNCFVMGTVPDSMGGIFDMLKEAALTMQQGGGIGYDFSTIRPKGAAVSGVA 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ A + H D+E+F+ ++ D R Sbjct: 135 ADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEDFIAAKQ----DPARLRM 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + D FM+ V + W L D KVFR Sbjct: 191 FNMSVLATDPFMEAVKDDGPWDLVFGD-----------------------------KVFR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + + + ++N C E L Sbjct: 222 TVQARDLWNRIMRATYDYAEPGVIFIDRINAENNLNYAETICATNPCGEQPLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQFDYD-----KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL ++ D KLA TA+R++DNV+D + ++ + Sbjct: 278 ACLLGSVNLAQLVSDPFTDTADLDPIKLADLTATAIRMMDNVVDTSRFPLDAQAQEAQAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL + + Y S EA ++ M I+ + AS LA E+GA+ Sbjct: 338 RRIGLGVTGLADALAMCRLRYGSEEAAAKTEDWMARIANASYRASALLAAEKGAFP---- 393 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 L + + RL D ++ + G+RN+ +IAPT TI+ Sbjct: 394 ---------------LFDAAEYAKAPMVQRLDAD-VQALIAEHGLRNALLTSIAPTGTIS 437 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 G S I+P + N Y + + D T +V+ + W + Sbjct: 438 LFAGNVSSGIEPIFANAYTRKVLQVDGTRTEEEVVDFAVAK--WRDMHGDT--------- 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 L A + P+ + + Q WID + S + + + S + +Y + Sbjct: 487 -------PLPDYFVNAQTLAPLDHVRMQAAAQPWIDSSISKTINVPADISFEAFKDVYAE 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 A+ G K R T S + D + + + P Sbjct: 540 AYATGCKGCTTYRPNDVTGSVLSVSEADDKPQAIEAIEAASGEVVYMSEP 589 >gi|237785989|ref|YP_002906694.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium kroppenstedtii DSM 44385] gi|237758901|gb|ACR18151.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium kroppenstedtii DSM 44385] Length = 718 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 180/740 (24%), Positives = 298/740 (40%), Gaps = 73/740 (9%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 S L+ + + L ++ R + + + H+++ Sbjct: 14 STEQLDFHALNAMLNLYDENGKIQFDKDREAANQFFLQ-----HVNQNTVFFHDLE---- 64 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E F I+ + E D+ L + +LG Y Y L +G+ Sbjct: 65 EKFDYLIKNNYYNGDVVEKYEFSDIKDLFKQAYSYKFRFKTFLGAYKYYTSYTLRTFDGN 124 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M A + + F +TPT N G + S Sbjct: 125 RYLERYED---RVCMVALGLADGDISLARRLVDEIIQGRFQPATPTFLNIGKAQRGEPVS 181 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 182 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREQGAPIKKIENQSSGVIPVMKL 241 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 242 LEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 301 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISAVALWRK 548 + +N LFSP D+ +YGK F E+Y+ + IK + I+A ++ Sbjct: 302 ELAKRNDDMYLFSP---YDVERVYGKPFSDIGISEHYDEMVEDPRIKKSK-INARQFFQT 357 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCN 601 + + FE+G+P+I F+D N +P G ++ SNLC+EI +S E + + Sbjct: 358 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSPSEFNADLTYQHIGD 415 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660 S NL + D D TI TA+R L V D + ++ ++ N AIGLG Sbjct: 416 DISCNLGSLNIAMVMDSDDFDGTIDTAIRGLTAVSDQTSIDSVPSVRQGNEHSHAIGLGQ 475 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L HI Y S EA++ + + + AS LA+ERG ++ F+ S + G Sbjct: 476 MNLHGYLGREHIYYGSEEALDFTNAYFAAVMVACLKASNRLAKERGVTFTGFEDSDYASG 535 Query: 720 VF-----PIDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F P D +V+ + S W +L++ ++ G+ N N AI PT + Sbjct: 536 AFFDRYDPKDFAPKTEKVKRIFEESSISVTTPEEWAQLREDIQQYGLYNRNLQAIPPTGS 595 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G + N+ Sbjct: 596 ISYINNSTSSIHPIASRIEIRKEGKIGRVYYPAPHMNND--------------------- 634 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 A+EI +I++ + K++DQ SL L+ + + + ++ Sbjct: 635 ----------NLDYFKDAYEIGYEKVIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQ 684 Query: 890 RQAWLMGLKTTYYLRSRSAT 909 AW G+KT YY+R R A Sbjct: 685 IYAWKNGIKTLYYIRLRQAA 704 >gi|12642667|gb|AAK00339.1| ribonucleotide reductase large subunit [Bovine herpesvirus 2] Length = 784 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 167/683 (24%), Positives = 279/683 (40%), Gaps = 59/683 (8%) Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFE--YLGLQI---LYDRYFLHINGSRIEMPQA 319 L + + + + RD G Q L + Y + G E Sbjct: 107 MDPKLAVMLRNHEPQLMEFLGSVARDSYLHVAERGFQSALKLEEFYLKRLPGDYKESVIQ 166 Query: 320 FFMRVAMGLALKETEK-----------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL 368 + R+A LA + F+N L S + +TP + N GT Sbjct: 167 LYTRIAGHLACRSEGMCRVALGREGSWMDMFEYFFNNLYSHAIVPATPAMLNLGTTGCYT 226 Query: 369 SSCFLTTVPDDLY--GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 SC+L + + + +GG+G + A +P Sbjct: 227 GSCYLINPQAQTSQAALAAITGNVSSILAKNGGVGLCMQSLNDAQAG-------QNSSVP 279 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWI 485 LK + A N+ +R VC Y+E WH D+ L R ++ +R ++ TA W+ Sbjct: 280 VLKALDSLVAAYNKNSRRPTGVCVYVEPWHSDILALLRTRGVLAGEEAQRCDNIFTALWM 339 Query: 486 PDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 PDLF +R+ ++ WTLF +L LYG EFE Y ER+ + + Sbjct: 340 PDLFFERLIRYLNGDKDMHWTLFDHKTGGELASLYGAEFEKKYVELEREG------LGER 393 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598 +S + ++ TG P++ FKD N G + SNLCTEI + + Sbjct: 394 VSIRDITYAIVRSAATTGSPFVMFKDAVNRHYIYDTQGEAIACSNLCTEIVHPADQNMSG 453 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 VCNLGS+N+ + FD+D+L S +R V +++ +ID + ++ + R++G+ Sbjct: 454 VCNLGSVNVAHCVVDGVFDFDRLRSAVRACVLMVNVMIDSTSLPTVQCRRGQNKLRSMGI 513 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717 G+ G +A + + S E E + A+ AS L + F S++ Sbjct: 514 GMQGLHTACLKMGLDMVSQEFRRTNKLIAEVMLLSAMQASNALCMHGAPPFREFGRSMYR 573 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G F + + W+EL++ +K G+RNS +A+ PT T + + Sbjct: 574 NGKFHWE---------GFPGVTPAFPEEWEELRRNIKRYGLRNSQFVALMPTVTSSQVSD 624 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR--DLWDEAMISDLKYHDGSIG-NI 834 VS+S P++ NL+ K SG+ N L+ EL++ ++ L H + I Sbjct: 625 VSESFAPTFTNLFSKVTKSGEVLRPNVLLLKELRRTFDGPRLSKVMDSLDKHQWTPDLAI 684 Query: 835 ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLDFI 888 + + + TAF+ + LI+ + R ++D +QSL LY+ E L + Sbjct: 685 PCLDEASPLRRFKTAFDYNQEDLIDLCADRAPYVDHSQSLTLYVTERADGTLPASMLTRL 744 Query: 889 YRQAWLMGLKT-TYYLRSRSATS 910 A+ GLKT YY + R AT+ Sbjct: 745 LVHAYKRGLKTGMYYCKVRKATN 767 >gi|83722608|ref|YP_443886.1| ribonucleotide reductase subunit 1 [Papiine herpesvirus 2] gi|75905761|gb|ABA29293.1| UL39 [Papiine herpesvirus 2] Length = 986 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 166/655 (25%), Positives = 271/655 (41%), Gaps = 58/655 (8%) Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAV 340 GLQ Y I+G +E + R+A LA ++ + Sbjct: 338 MRLMERGLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACHADLAGRVVFGRDASWL 397 Query: 341 E----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLA 394 E F+N + + STP + GTR P SSC+L + Q A + Sbjct: 398 EMFTYFFNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAITQNVAPIL 457 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 SGG+G + ++P LK + A N R V YLE Sbjct: 458 ARSGGIGLCLQNFNDRPG--------NASLMPALKALDSIVAAYNDQSLRPTGVTVYLEP 509 Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507 WH D+ L ++ ++ RR ++ +A W+PDLF KR+ +N WTLFS Sbjct: 510 WHSDIMAVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKNVVWTLFSHRGG 569 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 L +G+EFE Y E + + ++ TG P++ FKD Sbjct: 570 MHLASFHGEEFERLYRCQEELGFG------EAVPIQDVAYAIVRAAATTGSPFVMFKDAV 623 Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N G + SNLCTEI ++++++ VCNL S+NL FD+ +L ++R Sbjct: 624 NRHYIYDTQGAAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFARLRESVR 683 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 V +++ +ID + ++ + R++G+G+ G +A + + AS E E+ Sbjct: 684 ACVLMVNIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKMGLDLASEEFRELNRHI 743 Query: 687 MEFISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E + A+ AS L + FK S++ G F + R Sbjct: 744 AEVMLLAAMQASNALCFHGARPFREFKRSVFRAGRF---HWEGFPDARPRYE------GE 794 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L++ + G+RNS +A+ PT A + VS+ P + N++ K G+ N+ Sbjct: 795 WEMLRQSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTL 854 Query: 806 LVNELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESAS 861 L+ EL++ +I L S+ + + D + TAFE D LI+ + Sbjct: 855 LLRELRETFSGRRLNEVIDALDAKQWSVERALPCLAADHPLRRFKTAFEYDQELLIDLCA 914 Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++D +QSL L++ E L + A+ GLKT YY + R AT+ Sbjct: 915 DRAPYVDHSQSLTLHVTERADGTLPASSLVRLLVHAYKRGLKTGMYYCKVRKATN 969 >gi|319944854|ref|ZP_08019116.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] gi|319741424|gb|EFV93849.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] Length = 727 Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats. Identities = 187/744 (25%), Positives = 316/744 (42%), Gaps = 84/744 (11%) Query: 192 GLSESD---LETALIFSSRTLIEKEPNYAKVT----ARFLLEKLRREVLTTVYKKPQKAT 244 G+S+ D L+ + + L + + N AR + + + +K Sbjct: 18 GVSDDDKPGLDYHALNAMLNLYDADGNIQFEADRRAARQYFLQHVNQNTVFFHNLDEKLR 77 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYD 303 + + Y +R + D Y R F F +LG Y Sbjct: 78 YLVDEGYYDAEVLD-----QYSRNFQRHIWDE---------AYSRKFRFPTFLGAFKYYT 123 Query: 304 RYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L +E + + VA+ LA + E+ A+ F + + F +TPT N+ Sbjct: 124 SYTLKTRNGQRYLERFEDRVVMVALTLARGD---EQLALRFMDEIIGGRFQPATPTFLNA 180 Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 G + +L SCFL V D++ I A+ L+K GG+ T +R LGA I G + Sbjct: 181 GKKSRGELISCFLLRVEDNMESIGRAINSALQLSKRGGGVALMLTNLRELGAPIKGIENQ 240 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GV+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 241 SSGVVPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLS 300 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RK 539 IPD+ + +NA LFSP +V +YGK F + G+ ++ +K Sbjct: 301 LGVVIPDVTFELAKRNADMYLFSPHDV---EKVYGKAFSEISVTEKYDEMVGDKRIRKKK 357 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSE 595 I+A ++ + + FE+G+P+I F+D N +P G + SNLC+EI + ++ Sbjct: 358 INAREFFQTLAEIQFESGYPYIMFEDTVNAANPI--EGRITMSNLCSEILQVNEASTFND 415 Query: 596 ETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNH 651 + + +LG S NL + D L +T+ AVR L V +++ ++ ++ N Sbjct: 416 DLSYRHLGTDISCNLGSLNIAAAMDGPDLGATVEAAVRALTAVSEMSAIDSVPSVRRGND 475 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710 A+GLG M L I Y SPE ++ +++HA+ AS LAQE+ + Sbjct: 476 EAHAVGLGQMNLHGFLARERIHYGSPEGIDFTRVYFATVAYHALRASNLLAQEKGSTFVG 535 Query: 711 FKGSLWDQGVFP-----IDSIGLLAEVRDEL---AMNRTSRLPWDELKKRVKTIGMRNSN 762 F S + G F D + VR+ + +R W L++ V G+ N N Sbjct: 536 FDRSKYADGSFFEKYVTRDWLPETETVRELFARMDVTLPTREDWAALREAVMKHGLYNRN 595 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 A+ PT +I+ I + SI P + ++ + G F+ N+ Sbjct: 596 LQAVPPTGSISYINHSTSSIHPIVSKVEIRKESKIGRVYYPAPFMTND------------ 643 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 + + A+EI P LI++ + + +DQ SL L+ + Sbjct: 644 -------------------NLEYYRDAYEIGPEPLIDTYAAATEHVDQGLSLTLFFPSDA 684 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904 + + ++ AW G+KT YY+R Sbjct: 685 TTRDINRAQIYAWKKGIKTIYYVR 708 >gi|119387082|ref|YP_918137.1| ribonucleoside-diphosphate reductase, alpha subunit [Paracoccus denitrificans PD1222] gi|119377677|gb|ABL72441.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Paracoccus denitrificans PD1222] Length = 708 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 179/737 (24%), Positives = 303/737 (41%), Gaps = 70/737 (9%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 + DG+ ++L+ + + L + E R + R+ + + T Sbjct: 2 LDDGVK-AELDYHALNAMLNLYDGE-------GRIRFDADRKAARQYFLQHVNQNTVFFH 53 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 E ++EG + + L + + + +LG Y Y L Sbjct: 54 SL--DEKLGYLVDEGYYEAEVLDQYPRAFLHRIWDAAYARKFRFPTFLGAFKYYTSYTLK 111 Query: 309 INGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 R +E + + VA+ LA + E A+ F + S F +TPT N+G + Sbjct: 112 TRDGRRYLERYEDRVVMVALALARGD---EDLAMRFMEEILSGRFQPATPTFLNAGKKSR 168 Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +L SCFL + D++ I + L+K GG+ T +R GA I G +S GVI Sbjct: 169 GELISCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNLREAGAPIKGIENQSSGVI 228 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ I Sbjct: 229 PVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVI 288 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVA 544 PD+ + +N LFSP +V +YG F + + ++ +KI+A A Sbjct: 289 PDVTFELAKRNEDMYLFSPHDV---EKVYGLPFSEISVTEKYAEMVDDKRIRKKKINARA 345 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-- 602 ++ + + FE+G+P+I F+D N +P G + SNLC+EI + + E Sbjct: 346 FFQTLAEIQFESGYPYIMFEDTVNRANPV--AGRISMSNLCSEILQVNEASEFDEDLGYR 403 Query: 603 -----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAI 656 S NL + D +T+ A+R L V +++ + ++ N A+ Sbjct: 404 HLGTDISCNLGSLNIAATMDGPDFGATVEAAIRALTAVSEMSAIEAVPSIRRGNDEAHAV 463 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L I Y SPE VE +++HAI AS LAQE+ + F S Sbjct: 464 GLGQMNLHGFLARERIHYGSPEGVEFTSVYFAAVAYHAIRASNLLAQEKGRTFKDFDKSK 523 Query: 716 WDQGVFP-----IDSIGLLAE-VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 + G F D + L + R ++ +R W L++ V G+ N N A+ PT Sbjct: 524 YADGSFFDKYVAQDWLPTLPDVARVFEGVSLPTREDWAALRESVMRHGLYNRNLQAVPPT 583 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + ++ G Sbjct: 584 GSISYINNSTSSIHPIVAKIEIRKEGKIGRVYYP-------------------------- 617 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 + ++ + A+EI P +I++ + + +DQ SL L+ E + + ++ Sbjct: 618 -----AAFMSNENLDYYRDAYEIGPEAIIDTYAAATEHVDQGLSLTLFFPAEATTRDINR 672 Query: 888 IYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 673 AQIYAWKKGIKTIYYIR 689 >gi|315648443|ref|ZP_07901542.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus vortex V453] gi|315276137|gb|EFU39483.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus vortex V453] Length = 884 Score = 326 bits (834), Expect = 2e-86, Method: Composition-based stats. Identities = 143/635 (22%), Positives = 262/635 (41%), Gaps = 61/635 (9%) Query: 312 SRIEMPQAFFMRVAMGLALKETEKE---KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 + + P+ + R+A ++ E E + +F +L + + +G Sbjct: 83 TIEKTPEEMWDRLAAAMSSVEATPELQEEWRGKFREILDDWKLVPGGRIAAGAGASDELT 142 Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D GI L E + GG+G + + +R A + G NG S G + Sbjct: 143 LFNCYVIPSPKDSRGGIMETLSEMTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVS 202 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + WH DVE+F+ +++ G + + N + + Sbjct: 203 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVEDFITVKQTMG----QVTNANLSVCVS 258 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD Y + ++ E ++ + ++ + A +W Sbjct: 259 NDFMKAVKEDLDWELVFPDTTDPD---YDELWDGDLEKWKNAGHS--VIPYKTVRAREVW 313 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L VCNL ++N Sbjct: 314 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMN 369 Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + D +++LA+T R +VR LDNVID + E+ + + R +GLG MG Sbjct: 370 LSKFYDEANHDVAWEELATTTRYSVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGLA 429 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L+I Y SPE++E D+ FI+ A AS ++A+E+G++ +F L+ Q F + Sbjct: 430 ELMIKLNIRYGSPESLEFLDKLYGFIAREAYLASADIAEEKGSFQAFDAELYLQSGFMKN 489 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + E + V+ G RN + APT + + G S I+P Sbjct: 490 MAEVYPE-----------------VADAVREKGARNVTVITQAPTGSTGTMVGTSTGIEP 532 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y + + G +DE + + S ++L Sbjct: 533 YFAFKYFRQSRLG------------------FDEQFVPIAQDWLDSHPG-----EELPDY 569 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 + TA + I + Q+W+D + S + + + +Y A+ +G K Sbjct: 570 YVTAMTLSAEDHIRVQAAIQRWVDSSISKTANCPADFTVEDTKRLYELAFDLGCKGVTIY 629 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 R S T K D AV ++ Sbjct: 630 RDGSRDVQVLQTEKKEDKAAEAVTAPSAETALEQS 664 >gi|304407150|ref|ZP_07388804.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus curdlanolyticus YK9] gi|304344137|gb|EFM09977.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus curdlanolyticus YK9] Length = 875 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 135/614 (21%), Positives = 255/614 (41%), Gaps = 60/614 (9%) Query: 316 MPQAFFMRVA--MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 P+ + R+A M KE ++++ F +L + + +G L +C+ Sbjct: 87 TPEEMWDRLAGAMASVEKEEKRKEWTERFRYILDDWKLVPGGRIAAGAGASEELTLFNCY 146 Query: 373 LTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + P D GI L E + GG+G + + +R A + G NG S G + + + Sbjct: 147 VIPSPKDSRGGIMETLTEMTEIMARGGGVGINLSSLRPRRAIVAGVNGSSSGAVSWGGLF 206 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + T + QGG R+GA+ + WH D+ +F+ +++ G + + N + + + FMK Sbjct: 207 SYTTGLIEQGGSRRGALMLMINDWHPDLLDFITVKQTMG----QVTNANLSVCVSNGFMK 262 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 V ++ W L PD + +D + + + ++ + A +W ++ Sbjct: 263 AVKEDLDWELVFPDTKATGYDQLWDGDLEKWRSNGH-----PVIPYKTVRARDVWHTIIE 317 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 +++ P + F + N S + + +N C E L + VCNL +INL + Sbjct: 318 SAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPA----WGVCNLSAINLSKFY 373 Query: 612 A--NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D+++L R +VR LDNVID + + + + R +GLG MG + Sbjct: 374 DEGKDDVDWNELGRVTRWSVRFLDNVIDKTPYHFPENEANQQNERRVGLGTMGLAELMIK 433 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L I Y SPE++ D+ FI+ + AS E+A E+G++ +F+ + Q F + + Sbjct: 434 LGIRYGSPESLSFLDKLYGFIARESYLASSEIASEKGSFPAFEAEPYLQSGFMQNMV--- 490 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + E+ + G+RN + APT + + G S I+P + Sbjct: 491 --------------EEYPEVGDAIMKSGVRNVTVLTQAPTGSTGTMVGTSTGIEPYFAFE 536 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + + G + LV ++ W + H G +L + T+ Sbjct: 537 YFRQSRLG----FDKQLVPIAQE---W-------IDAHPG---------QELPDYYVTSM 573 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + I + Q+W+D + S ++ + ++ +Y A+ +G K R S Sbjct: 574 SLSAKDHIRVQAAIQRWVDSSISKTANAPNDFTVEETKELYELAFDLGCKGVTIYRDGSR 633 Query: 909 TSVEKSTLKGVDGK 922 ST + K Sbjct: 634 DVQVLSTSSKDEKK 647 >gi|56694762|ref|YP_164482.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 2] gi|52843314|gb|AAU88105.1| large subunit of ribonucleotide reductase [Cercopithecine herpesvirus 2] Length = 975 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 165/653 (25%), Positives = 273/653 (41%), Gaps = 58/653 (8%) Query: 293 FEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKET-------EKEKRAVE- 341 GLQ Y I+G +E + R+A LA + ++ +E Sbjct: 329 LMERGLQSALKYEEFYLKKIDGWLLESVPQMYARIAGYLACRSDLAGRVVFGRDASWLEM 388 Query: 342 ---FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKY 396 F+N + + STP + GTR P SSC+L + Q+ A + Sbjct: 389 FTYFFNRFYAHEIVPSTPAMLGLGTRRPYTSSCYLVNPQTRTAHSTLAAITQDVAPILAR 448 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 SGG+G + ++P LK + A N R V YLE WH Sbjct: 449 SGGIGLCLQSFNDRPG--------NASIMPALKALDSIVAAYNDQSLRPTGVTVYLEPWH 500 Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSD 509 D+ L ++ ++ RR ++ +A W+PDLF KR+ ++ WTLFS Sbjct: 501 SDIMAVLRMKGVLAGEEARRCDNIFSALWMPDLFFKRLIRYLEGEKDVVWTLFSNRGGMH 560 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 L +G+EFE Y E Q + + ++ TG P++ FKD N Sbjct: 561 LSSFHGEEFEKLYLCQEEQGFG------EAVPIQDVAYAIVRAAATTGSPFVMFKDAVNR 614 Query: 570 RSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 G + SNLCTEI ++++++ VCNL S+NL FD+ +L ++R Sbjct: 615 HYIYDTQGSAIAGSNLCTEIVHPANAQQSGVCNLASVNLAECVVGRTFDFSRLRESVRAC 674 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 V +++ +ID + ++ + R++G+G+ G +A L + AS E E+ E Sbjct: 675 VLMVNIMIDHTAQPTPQCRRGHDRLRSMGIGMQGLHTACLKLGLDLASEEFRELNRHIAE 734 Query: 689 FISFHAISASVELA-QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 + A+ AS L + FK S++ G F R W+ Sbjct: 735 VMLLAAMQASNALCLHGARPFREFKRSVFRAGRF---HWEGFPGARPRYE------GEWE 785 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L++ + G+RNS +A+ PT A + VS+ P + N++ K G+ N+ L+ Sbjct: 786 RLRQSMMKHGLRNSQFIALMPTVASAQLADVSEGFAPLFTNMFSKVTRDGETLRPNTLLL 845 Query: 808 NELKQR--DLWDEAMISDLKYHDGSI-GNIERIPDDLK-KIHATAFEIDPMWLIESASRR 863 EL++ ++ L S+ + + D + TAF+ D LI+ + R Sbjct: 846 RELRETFSGRRLNEVLDGLDAKQWSVERALPCLAADHPLRRFKTAFDYDQELLIDLCADR 905 Query: 864 QKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 ++D +QS+ LY+ E L + A+ GLKT YY + R AT+ Sbjct: 906 APYVDHSQSMTLYVTERADGTLPASALVRLLAHAYKRGLKTGMYYCKVRKATN 958 >gi|320095250|ref|ZP_08026947.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 178 str. F0338] gi|319977791|gb|EFW09437.1| ribonucleotide-diphosphate reductase subunit alpha [Actinomyces sp. oral taxon 178 str. F0338] Length = 718 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 173/744 (23%), Positives = 298/744 (40%), Gaps = 85/744 (11%) Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +L+ + + L + + + + AR + + + +K + Sbjct: 11 EEAPSPELDYHALNAQLNLYDADGRIQFDADRAAARQYFLQHVNQNTVFFHDLEEKLDY- 69 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 +EEG + + + D+ L + +LG Y Y Sbjct: 70 ------------LVEEGYYEKHVLDQYAMEDIKALYKQAYAHKFRFPTFLGAFKYYTSYT 117 Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R E + + V+M LA + A F + + + F +TPT N+G Sbjct: 118 LKTFDGKRYLERFEDRVVMVSMYLARGD---VDLAASFVDEIMTGRFQPATPTFLNAGKA 174 Query: 365 -HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 +L SCFL V D++ I + L+K GG+ T +R GA I +S G Sbjct: 175 ARGELVSCFLLRVEDNMESIARGINSALQLSKRGGGVALQLTNLREAGAPIKKIQNQSSG 234 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 V+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 235 VVPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMAFLDTKRENADEKIRIKTLSLGV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISA 542 IPD+ + +N LFSP D+ +YG F + + ++ +KI+A Sbjct: 295 VIPDITFELARKNEDMYLFSP---YDVERVYGVPFSEIPVTEKYHEMVDDGRIHKKKINA 351 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNS 592 ++ + + FE+G+P+I F+D N +P + V ++ E + Sbjct: 352 RRFFQTLAEIQFESGYPYIVFEDTVNRANPIKGRVTMSNLCSEILQVSEASTYNEDLSYA 411 Query: 593 SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNH 651 + CNLGS+N+ D + TI TA+R L V D+ + + + N Sbjct: 412 HVGKDISCNLGSLNIAKT-----MDSPDFSKTIETAIRGLTAVSDLSDIGAVPSIARGNA 466 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSS 710 AIGLG M L H+ Y S EA++ + + F A+ AS +A+ER + Sbjct: 467 MSHAIGLGQMNLHGYLAREHVHYGSEEALDFTNIYFMTVLFEAVRASCAIARERGERFEG 526 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSN 762 F+ S + G F I E + ++ +R W L V GM N N Sbjct: 527 FEDSAYASGEFFRKYIDEAWEPATDKCRELLAASSIRVPTRDDWRALAADVARYGMYNQN 586 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMI 821 A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 587 LQAVPPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAPYMTN------------- 633 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 + + + A+EI P +I++ + + +DQ SL L+ + Sbjct: 634 ------------------ENLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTV 675 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904 + + L+ Y AW G+KT YY+R Sbjct: 676 TTRDLNKSYIYAWRKGIKTLYYMR 699 >gi|218289142|ref|ZP_03493378.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] gi|218240725|gb|EED07904.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] Length = 574 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 147/482 (30%), Positives = 238/482 (49%), Gaps = 19/482 (3%) Query: 122 REERSDVRAAQSHSKSDA--PIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSK 179 R + ++R+ ++ + + DG + + ++ + C + + Sbjct: 14 RTGQDELRSGRAIHTLEDWRDRVKTFTVEKRDGRIEPLSLDKIFAFLRRGCEAAEGCDPE 73 Query: 180 IVLSETYKNMYDGLSESDLETALIFSSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYK 238 + ++ + + DG+ S++ I ++ EP + V AR LL ++ Sbjct: 74 RLAADVWPQLRDGMRTSEIARVAIQAAVEKTSVAEPGWQFVAARLLLLDAYKQASRN--- 130 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 + H + + G + E + ++ LA +K ERD Y+GL Sbjct: 131 ---RGYRHLGYGDFYQLIVELERIGRYGTYIREHYSEDEIAELAAYIKPERDHLLNYVGL 187 Query: 299 QILYDRYFLHI-NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 + L DRY + + +E+PQ FM V+M LA+KE +K A FY++LS+ +TPT Sbjct: 188 KQLLDRYAIRNLDNGIMELPQELFMGVSMHLAMKEKDKVAWAKRFYDMLSTLQATVATPT 247 Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 L N+ QLSSCF+ DDL I+ + A ++K+ GG+G +R G+ I Sbjct: 248 LSNARKPFHQLSSCFIDMPEDDLVSIYATDEAFARVSKFGGGMGIYVGKIRARGSAIRNH 307 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G S GV+P+++ N+TAV+ NQ G R GA YL+ WH D+ +FL LR N GD+R + H Sbjct: 308 PGASGGVVPWIRNFNNTAVSCNQLGMRAGAAAVYLDVWHKDILDFLQLRTNNGDERMKAH 367 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL-----HDLYGKEFEIAYENYERQADRG 532 D+ IPDLFM+RV + W LF P EV + D +G+EFE YE + Sbjct: 368 DIFPGVCIPDLFMRRVEERGMWYLFCPYEVRKVMGFSLEDSWGEEFERRYEACVENPNLP 427 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 + +I A+ + ++++ FETG P+I F+D N +P +H G+V+ SNLCTEI N Sbjct: 428 RV----EIPAIEIMKRIMQSAFETGTPFIFFRDTANRLNPNKHAGMVYCSNLCTEIIQNM 483 Query: 593 SS 594 S Sbjct: 484 SP 485 >gi|126179941|ref|YP_001047906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoculleus marisnigri JR1] gi|125862735|gb|ABN57924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methanoculleus marisnigri JR1] Length = 548 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 165/625 (26%), Positives = 265/625 (42%), Gaps = 88/625 (14%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 + +L RY L E P F RVA + +E + LLS+ Sbjct: 1 MEISPIARLLLEGRYLL-----PGETPAGLFSRVADAVGGTARSREFFS-----LLSALL 50 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 F+ ++PTL N+GT QLS+CF+ + D L GIFG L A++ + GG G ++ +R Sbjct: 51 FLPNSPTLMNAGTSAGQLSACFVLPMEDTLEGIFGTLGHMALIHQSGGGTGFSFSLLRPR 110 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 G ++G G + G + F++V + AV QGG+R+GA L H D+EEF+ ++ G Sbjct: 111 GDAVNGVTGAATGPVSFMRVFDAATGAVRQGGRRRGANMGVLAASHPDIEEFVTAKQEGG 170 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + N + + + F + + + L +P + Sbjct: 171 -----LSNFNISVGVDERFFRCLATGKEYDLINPRD------------------------ 201 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 V++ + A +LWR + +G P + F D N ++ H+G + ++N C E L Sbjct: 202 ---GSVWKSVDAGSLWRLIAASACISGEPGVLFLDEINRQNTTPHLGRIEATNPCGEQPL 258 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGS+NL + D D L + +R V LD VID N + + ++ Sbjct: 259 YPY----ESCNLGSVNLARCVRQHDLDEDLLITVVRCGVDFLDAVIDANRFPLPEIRERT 314 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R IGLG+MGF AL L IPY S EA+ A ME I A S E+ +E G++ + Sbjct: 315 LATRKIGLGVMGFAEALIRLGIPYESEEALRFAGSLMEHIEEMARERSEEIGKEIGSFPA 374 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 +GS++ MRN+ IAPT Sbjct: 375 IEGSIFSGE--------------------------------------MRNATVTTIAPTG 396 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I I G + I+P + Y + + G + S LV R + + ++ H G+ Sbjct: 397 SIHLIAGTTSGIEPVFSFAYDR-TIDGRPVSIVSDLVAGFLPRTAGGKDVAEHVRRH-GT 454 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 + + + D + + TA EI P + + QK +D A S + L + ++ ++ Sbjct: 455 VAGLP-LDDHARDLFRTATEIAPEHHVRMQAAFQKHVDNAVSKTVNLPQSATVDEIACVF 513 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKS 914 A +G K T R RS S Sbjct: 514 SLAHDLGCKGTTVYRYRSRPDQIFS 538 >gi|312130785|ref|YP_003998125.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella byssophila DSM 17132] gi|311907331|gb|ADQ17772.1| ribonucleoside-diphosphate reductase, alpha chain [Leadbetterella byssophila DSM 17132] Length = 557 Score = 325 bits (832), Expect = 3e-86, Method: Composition-based stats. Identities = 165/623 (26%), Positives = 260/623 (41%), Gaps = 112/623 (17%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 QIL Y L NG +E R+ A + + E F ++ S+P Sbjct: 22 QILNRGYLL--NGETVEGAIH---RICSAAAKRLYKPEL-TEAFKEMIERGWMSLSSPIW 75 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF VPD + I L E M K GG + +RG G+ + N Sbjct: 76 ANMGTERGLPISCFNVHVPDSIESITHKLGEVIMQTKTGGGTSGYFGDLRGRGSAVTD-N 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKS G + F+K+ + ++QGG R+GA AYL+ H D EEFL ++ + Sbjct: 135 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDCEEFLQIKNIG----NPIQN 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + A +PD +M+ + Sbjct: 191 LFFAVCVPDYWMQEMIDGD----------------------------------------- 209 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ---QHVGVVHSSNLCTEITLNSSSE 595 + LW K+L + G P+I F D N PQ H +++SNLC+EI L SS++ Sbjct: 210 -MEKRQLWAKVLESRQQKGLPYIFFTDNVNRNKPQVYKDHNMRINASNLCSEIMLPSSAD 268 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649 E+ +C L S+NL +D K ++ A+ LD V+ E + Sbjct: 269 ESFICCLSSMNLE------LYDEWKDTKAVKLAIFFLDAVLQEFIAKTEDNYYLAAANRF 322 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 HRA+GLG++G+ S L +P+ EA ++ E + A A+ ELA G Sbjct: 323 AKRHRALGLGVLGWHSLLQKRMLPFEGMEAKQLTSEIFRHMKTEADKATEELAMIYGEPE 382 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 KG G RN+ MAIAPT Sbjct: 383 LLKG------------------------------------------YGRRNTTTMAIAPT 400 Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + I G S I+P N + G+F N +L L+++ + +E + ++ Sbjct: 401 TSSSAILGQTSPGIEPFSSNYFKAGLAKGNFMRKNKYLKALLEEKGIDNEETWRSIMLNN 460 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 GS+ +++ + + K + T EI + +I+ AS RQK++DQ QSLN+ + E K ++ Sbjct: 461 GSVQHLKELNEYEKSVFKTFKEISQLEIIQQASIRQKYVDQGQSLNINIPAELPIKDVNR 520 Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910 + +AW +G+K+ YY RS+S + Sbjct: 521 LIIEAWKLGIKSLYYQRSQSVSK 543 >gi|328943410|ref|ZP_08240875.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium vaginae DSM 15829] gi|327491379|gb|EGF23153.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium vaginae DSM 15829] Length = 756 Score = 325 bits (832), Expect = 3e-86, Method: Composition-based stats. Identities = 183/788 (23%), Positives = 318/788 (40%), Gaps = 82/788 (10%) Query: 193 LSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 +S S ++ + ++ T ++ +Y ++ + K+ + + Sbjct: 22 MSTSTTDSYIALNALTRFKTEDGHYNFSA--------DKKAVQLYLKEQVEPRLKTFES- 72 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 + +E + + + D+ L + + +G Y Y L + Sbjct: 73 CQQRLDYLVEHQYYDKAVLDLYSQEDIEALTSLAYEQHFEFLSLMGAMKFYMAYALQSDD 132 Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 +E + RV M A L S F +TPT N+G + + Sbjct: 133 RTTYLERFED---RVVMCALFLANGDVALARNLVLDLMSNRFQPATPTFLNAGKKRRGEY 189 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L V D++ I + + L+K GG+ T +R GA I G ++ GV+P + Sbjct: 190 ISCYLLRVEDNMESIARGIGTSLQLSKRGGGVALCLTNLRETGAPIKGFAHQASGVVPVM 249 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ DT NQ G+R+GA YL H D+ FLD ++ D++ R ++ +PD+ Sbjct: 250 KLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKSLSLGVIVPDI 309 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 K +N LFSP ++ + + E Y+ + IK ISA ++ Sbjct: 310 TFKLAKENKDMALFSPYDIEKEYKCSMADMS-ITEKYDELVNNPRIKKD-YISARKFFQT 367 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA---------- 598 + + FE+G+P+I F+D N R+P + G + SNLC+EI S+ Sbjct: 368 IAELQFESGYPYILFEDTVNRRNPHKKAGRIVMSNLCSEIAQVSTPSSYTEDLGFTQTGV 427 Query: 599 --VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRA 655 CNLGSIN+ A + + + TI+ A+ LD V + K N + A Sbjct: 428 DICCNLGSINIAAAMDHA----SEFSRTIKDAIVALDRVSRSSDLSCAPSVNKGNKLNHA 483 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG M L HI YAS EAV+ D +++HA AS ELAQ GA++ F S Sbjct: 484 VGLGAMNLHGFLATHHIYYASAEAVDFVDMFFYAMAYHAFKASSELAQTEGAFAGFADSE 543 Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + +A++ + ++ W EL K ++ G+ NS+ MA+A Sbjct: 544 YADGTYFKKYTEHKIAPATPRIAKLLADCHFELPTQQDWQELVKDIRAHGLANSHLMAVA 603 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ + + S+ P + + V ++ Sbjct: 604 PTGSISYLSSCTPSLQPVVSPVETRKEGKVGRVYVPAY---------------------- 641 Query: 828 DGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 +I DD K + A+E+ +I + QK +DQA SL L++ + + L Sbjct: 642 --------KISDDTYKYYQDGAYEVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDL 693 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 + Y A+ + YY+R + + L + + + + C Sbjct: 694 NRAYIYAFKKKCDSIYYVR-------IRQDVLEGSEHLESDEILPDAAKSDEKKSAFHCD 746 Query: 946 SDTECEVC 953 +EC+VC Sbjct: 747 GSSECQVC 754 >gi|219883064|ref|YP_002478228.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter chlorophenolicus A6] gi|219862070|gb|ACL42411.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter chlorophenolicus A6] Length = 726 Score = 325 bits (832), Expect = 3e-86, Method: Composition-based stats. Identities = 191/755 (25%), Positives = 304/755 (40%), Gaps = 84/755 (11%) Query: 176 VSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTT 235 VS +L E Y GL +L L L + R + ++ Sbjct: 11 VSKDDLLPEA----YKGLGYHELNAML-----NLYGADGKMQFGADREAARQYFKQ---- 57 Query: 236 VYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY 295 + H++ E +E L E + L ++ + Sbjct: 58 -HVNMNTVFFHDLA----EKLDYLVENRYYEPELLEQYGFEFVKSLFQRAYKKKFRFETF 112 Query: 296 LGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 LG Y Y L +G R E + VA+GLA + A + + + F Sbjct: 113 LGAFKFYTSYTLKTFDGKRFLERYEDRVTMVALGLAAGDKA---LAEKLVDEIIDGRFQP 169 Query: 354 STPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT NSG +L SCFL + D++ I A+ L+K GG+ T VR GA Sbjct: 170 ATPTFLNSGKAQRGELVSCFLLRIEDNMESISRAINSALQLSKRGGGVAFALTNVRETGA 229 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D+ Sbjct: 230 PIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADE 289 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQAD 530 + R ++ IPD+ + ++ LFSP D+ +YG F E Y D Sbjct: 290 KIRIKTLSLGVVIPDITFELAKKDEDMYLFSP---YDVEKVYGMPFSDINVTEKYYEMVD 346 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 IK + I A ++ + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 347 DARIKKTK-IKAREFFQTLAEIQFESGYPYIMFEDTVNRANPI--EGKIIMSNLCSEILQ 403 Query: 591 ------NSSSEETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640 + + V +G S NL + D L +T+ A+R L V D N Sbjct: 404 VSTPTTYNENLNYEVDGIGKDISCNLGSMNIAKAMDGGDLGATVEIAIRALTAVSDQSNI 463 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E + N AIGLG M L H+ Y SPE+++ + M ++FHAI AS Sbjct: 464 TAVESVARGNRMSHAIGLGQMNLHGFLAREHVYYGSPESIDFFGKYMAAVAFHAIRASNL 523 Query: 701 LAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKK 751 +A+ERG + F+ S + G F + E+ + + + W+ELK Sbjct: 524 IAKERGVTFDGFERSKYASGEFFDKYVTRSWLPTTERGQELFAKFGITLPTIADWEELKA 583 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNEL 810 V G+ N N A+ PT +I+ I + SI P + ++ G +L N Sbjct: 584 SVMEHGIYNQNLQAVPPTGSISYINNSTASIHPIAAKIEIRKEGKIGRTYFPAPYLTN-- 641 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + A+EI +++ + + +DQ Sbjct: 642 -----------------------------ENLEYYQDAYEIGYEKIVDMYAAATEHVDQG 672 Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 SL L+ + + + ++ AW G+KT YY+R Sbjct: 673 LSLTLFFKDTATTRDINKAQIYAWKKGIKTIYYIR 707 >gi|153004250|ref|YP_001378575.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. Fw109-5] gi|152027823|gb|ABS25591.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. Fw109-5] Length = 593 Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats. Identities = 167/634 (26%), Positives = 271/634 (42%), Gaps = 78/634 (12%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSF 349 L +L RY L G+ +E P A F RVA +A E +++ A F +S+ Sbjct: 4 LTDNALHVLERRYLLRDERGAVVETPGALFRRVARAVAAAEPPAERDRAAERFEARMSAL 63 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F+ ++PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R Sbjct: 64 EFLPNSPTLMNAGRAHGQLAACFVLPVEDDLAAIFDALKWAALIHQSGGGTGFAFSRLRP 123 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G + T+G + G + F++V + + QGG R+GA A L H D+ EF+D +++ Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLSAEHPDILEFVDAKRSH 183 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + + N + PD + ++ W L P Sbjct: 184 GLE-----NFNLSVAAPDALFRAASRGDPWPLRHP------------------------- 213 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + R I AL ++ + +G P + F D +P +G + N C E Sbjct: 214 ---RGGIVRNIDPRALLARIADSAWASGEPGLVFLDRVEAANPTPDLGHFEAVNPCGEQP 270 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L C LGS+NL + + D+D L + +R VR LD+V+D+N + + + Sbjct: 271 LLPF----EACTLGSVNLACFERSGRVDWDGLGACVRDGVRFLDDVLDVNVWPLPQIAEI 326 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 +H +R +GLG+MG+ L L IPY SP+A+ ADE M F++ A +AS LA+ERGA+ Sbjct: 327 SHRNRKVGLGVMGWADLLVRLGIPYDSPDALAKADEVMGFVTREAHAASEALARERGAFP 386 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 F S P RN+ IAPT Sbjct: 387 GFPTSALAHAGRP-----------------------------------RRNATVTTIAPT 411 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 T+A I G S I+P + YV+ + LV E + D A+ + Sbjct: 412 GTLALIAGCSSGIEPLFALAYVRRALDDSELREEHPLVAEALRAAGADAALAAVRAAGR- 470 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888 + +P + ++ ATA ++ P + + Q+ D S + L + + Sbjct: 471 -ARGVPGVPPAVARLFATAHDVAPEAHVRMQAAFQRHTDNGVSKTINLPRSAAVDDVARA 529 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 Y A+ +G K R S ++ +G+ Sbjct: 530 YALAYELGCKGITVYRDGSRERQVLTSGATRNGE 563 >gi|313206312|ref|YP_004045489.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella anatipestifer DSM 15868] gi|312445628|gb|ADQ81983.1| ribonucleoside-diphosphate reductase, alpha chain [Riemerella anatipestifer DSM 15868] gi|315023178|gb|EFT36189.1| ribonucleotide-diphosphate reductase subunit alpha [Riemerella anatipestifer RA-YM] gi|325336243|gb|ADZ12517.1| Ribonucleotide reductase, alpha subunit [Riemerella anatipestifer RA-GD] Length = 551 Score = 324 bits (831), Expect = 4e-86, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 262/633 (41%), Gaps = 120/633 (18%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348 Q+L Y L E R+ A L E + F ++ Sbjct: 10 LNEESEQMLNRGYLLKG-----ETVHGAIKRITTAAAKRLYKPELQP-----AFEEMIVK 59 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 S+P N GT+ SCF +PD + GI + E M K GG + +R Sbjct: 60 GWISFSSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELR 119 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G + NGKS G + F+K+ + V+QGG R+GA AYL+ H D+EEFL ++ Sbjct: 120 HRGTAVTD-NGKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLTIK-- 176 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D ++ T +PD +M+ + Sbjct: 177 --DIGSPIQNLFTGVCVPDYWMQDMIDGD------------------------------- 203 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLC 585 I +W K+L + G P++ F D N PQ + V++SNLC Sbjct: 204 -----------IDKRKIWAKVLESRQQKGLPYVFFTDNVNRNKPQVYKDKGLLVNASNLC 252 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 +EI L S+ EE+ +C L S+NL +D K + ++ A+ LD V+ E Sbjct: 253 SEIMLPSTQEESFICCLSSMNLE------LYDEWKDTNAVKLAIYFLDAVLSEFIEKTEG 306 Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 HRA+GLG++G+ S L IP+ S EA + + + I A +AS Sbjct: 307 NYYLQGARNFAMKHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFKHIKEQAEAASK 366 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA G KG GMR Sbjct: 367 ELANIYGEPELLKG------------------------------------------YGMR 384 Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 N+ MAIAPT + + I G S I+P N Y G+F N +L L+++ L +E Sbjct: 385 NTTLMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLKKLLEEKGLENE 444 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ + GS+ +++ + ++ K + T EI PM +I A++RQ++IDQAQSLNL + Sbjct: 445 ETWRNIMLNHGSVQHLDGLTEEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQIP 504 Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 K ++F+ +AW G+KT YY RS S + Sbjct: 505 STMPVKDVNFLMIEAWKKGIKTLYYQRSSSVSK 537 >gi|255535949|ref|YP_003096320.1| ribonucleotide-diphosphate reductase subunit alpha [Flavobacteriaceae bacterium 3519-10] gi|255342145|gb|ACU08258.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit [Flavobacteriaceae bacterium 3519-10] Length = 551 Score = 324 bits (831), Expect = 4e-86, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 264/633 (41%), Gaps = 120/633 (18%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348 Q+L Y L E + R+ A L E + F +++ Sbjct: 10 LNEESEQMLNRGYLLKG-----ETVKGAIERITTAAAKRLYKPELQP-----AFEEMITK 59 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 S+P N GT+ SCF VPD + GI L E M K GG + +R Sbjct: 60 GWISFSSPVWANMGTQRGLPISCFNVHVPDHIEGITHKLGEVIMQTKIGGGTSGYFGELR 119 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G + NGKS G + F+K+ + V+QGG R+GA AYL+ H D+EEFL ++ Sbjct: 120 NRGTAVTD-NGKSSGAVSFMKLYDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLSIK-- 176 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D ++ T +PD +M+ + Sbjct: 177 --DIGSPIQNLFTGICVPDYWMQDMIDGD------------------------------- 203 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585 + +W ++L + G P+I F D N PQ + +++SNLC Sbjct: 204 -----------MDKRKIWARVLESRQQKGLPYILFSDNVNRNKPQVYKDLGMTINASNLC 252 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 +EI L S++EE+ +C L S+NL +D K + ++ A+ LD V+ E Sbjct: 253 SEIMLPSNAEESFICCLSSMNLE------LYDEWKDTNAVKLAIYFLDAVLSEFIEKTEG 306 Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 HRA+GLG++G+ S L IP+ S EA + + I +++AS Sbjct: 307 NYYLTGARNFALRHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFRQIKEQSLAASQ 366 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA G KG GMR Sbjct: 367 ELANIYGEPELLKG------------------------------------------YGMR 384 Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 N+ MAIAPT + + I G S I+P N Y G+F N +L L+++ L +E Sbjct: 385 NTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLAKLLQEKGLDNE 444 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + GS+ ++ + ++ K + T EI PM +I A++RQ++IDQAQSLNL + Sbjct: 445 ETWRTIMLNHGSVQHLNELTEEEKAVFKTFREISPMEIISQAAQRQQYIDQAQSLNLQIP 504 Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 K ++++Y +AW G+KT YY RS S + Sbjct: 505 STMPVKDVNYLYIEAWKKGVKTLYYQRSSSVSK 537 >gi|308233464|ref|ZP_07664201.1| ribonucleotide-diphosphate reductase subunit alpha [Atopobium vaginae DSM 15829] Length = 735 Score = 324 bits (830), Expect = 5e-86, Method: Composition-based stats. Identities = 183/788 (23%), Positives = 318/788 (40%), Gaps = 82/788 (10%) Query: 193 LSESDLETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL 251 +S S ++ + ++ T ++ +Y ++ + K+ + + Sbjct: 1 MSTSTTDSYIALNALTRFKTEDGHYNFSA--------DKKAVQLYLKEQVEPRLKTFES- 51 Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 + +E + + + D+ L + + +G Y Y L + Sbjct: 52 CQQRLDYLVEHQYYDKAVLDLYSQEDIEALTSLAYEQHFEFLSLMGAMKFYMAYALQSDD 111 Query: 312 S--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 +E + RV M A L S F +TPT N+G + + Sbjct: 112 RTTYLERFED---RVVMCALFLANGDVALARNLVLDLMSNRFQPATPTFLNAGKKRRGEY 168 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L V D++ I + + L+K GG+ T +R GA I G ++ GV+P + Sbjct: 169 ISCYLLRVEDNMESIARGIGTSLQLSKRGGGVALCLTNLRETGAPIKGFAHQASGVVPVM 228 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ DT NQ G+R+GA YL H D+ FLD ++ D++ R ++ +PD+ Sbjct: 229 KLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKSLSLGVIVPDI 288 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 K +N LFSP ++ + + E Y+ + IK ISA ++ Sbjct: 289 TFKLAKENKDMALFSPYDIEKEYKCSMADMS-ITEKYDELVNNPRIKKD-YISARKFFQT 346 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA---------- 598 + + FE+G+P+I F+D N R+P + G + SNLC+EI S+ Sbjct: 347 IAELQFESGYPYILFEDTVNRRNPHKKAGRIVMSNLCSEIAQVSTPSSYTEDLGFTQTGV 406 Query: 599 --VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRA 655 CNLGSIN+ A + + + TI+ A+ LD V + K N + A Sbjct: 407 DICCNLGSINIAAAMDHA----SEFSRTIKDAIVALDRVSRSSDLSCAPSVNKGNKLNHA 462 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG M L HI YAS EAV+ D +++HA AS ELAQ GA++ F S Sbjct: 463 VGLGAMNLHGFLATHHIYYASAEAVDFVDMFFYAMAYHAFKASSELAQTEGAFAGFADSE 522 Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + +A++ + ++ W EL K ++ G+ NS+ MA+A Sbjct: 523 YADGTYFKKYTEHKIAPATPRIAKLLADCHFELPTQQDWQELVKDIRAHGLANSHLMAVA 582 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ + + S+ P + + V ++ Sbjct: 583 PTGSISYLSSCTPSLQPVVSPVETRKEGKVGRVYVPAY---------------------- 620 Query: 828 DGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 +I DD K + A+E+ +I + QK +DQA SL L++ + + L Sbjct: 621 --------KISDDTYKYYQDGAYEVGYEAIINIVAAAQKHVDQAISLTLFMTSQATTRDL 672 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 + Y A+ + YY+R + + L + + + + C Sbjct: 673 NRAYIYAFKKKCDSIYYVR-------IRQDVLEGSEHLESDEILPDAAKSDEKKSAFHCD 725 Query: 946 SDTECEVC 953 +EC+VC Sbjct: 726 GSSECQVC 733 >gi|121592862|ref|YP_984758.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax sp. JS42] gi|120604942|gb|ABM40682.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax sp. JS42] Length = 811 Score = 324 bits (830), Expect = 5e-86, Method: Composition-based stats. Identities = 148/663 (22%), Positives = 251/663 (37%), Gaps = 79/663 (11%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + + +L ++YF + F RVA LA E E ++A+E F + L + Sbjct: 16 PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDMRQALEARFLDNLRAGAIG 71 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D GI+ AL+E A + GG+G D+ Sbjct: 72 AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L G Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWELVHGAAPGAELQAQG--------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 V+R + A LW ++ ++ P I F D N + + + ++N Sbjct: 239 --AHQRADGQWVYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637 C E L C+LG I L N FD+D + T VR LDNV+D Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + + + + R IG+G G + L +L Y E ++A + E + A A Sbjct: 353 VTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRQEGRDMAVQIAERMRNAAYRA 412 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SVELA+E+GA+ F + LA + +++K ++ G Sbjct: 413 SVELAKEKGAFPKF-------------------DADGYLAKGTFASRLPADIQKAIRKHG 453 Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 +RNS+ ++IAPT T++ S I+P + Y + D + + ++V + Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYA---- 508 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 K G + ++ +A ++ + Q ++D A S + Sbjct: 509 -----WRLYKTLGGDVNHLP-------AYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + + +Y QAW GLK R S + P +P Sbjct: 557 NVPEDYPYDDFKGLYMQAWHSGLKGLATYRPNSILGAVLEVPAAEAKPAKSEPAPEPVQP 616 Query: 935 THS 937 Sbjct: 617 FDP 619 >gi|269975272|gb|ACZ55496.1| ribonucleoside triphosphate reductase alpha chain [Staphylococcus phage SA1] Length = 744 Score = 324 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 165/781 (21%), Positives = 297/781 (38%), Gaps = 78/781 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 I +GT++SF+ +RL A + + V E K +Y+G + ++ A+I Sbjct: 4 TIKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDV 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +E Y+ + R LL + +E K P T F + +E Sbjct: 62 CVDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNMERAGL 108 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323 + +L YL + + +D ++ Y L+ D+Y + G E PQ FM Sbjct: 109 WEKMD--YSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMG 166 Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +AM + + + ++ Y LS TP L +SC L D Sbjct: 167 MAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 + A + + G+G R +G I + G +P+ K+ + A N+ Sbjct: 227 SLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEA-NKQ 284 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R G+ + +E+ L L+ T +R ++M+ + D F + V + W L Sbjct: 285 KSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLL 344 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FS + L+D++ + A +K R++ A + + + + TG + Sbjct: 345 FSYKDAPKLYDMFYTASADEFAMAVGHAVHSGVK-HRRVKAREIAKLFIQQRYATGRVYP 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----------GSINLLAHF 611 F + N +P + SNLC EI L E ++ LA Sbjct: 404 FFTNNANTHTPF--KEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFLASL 461 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+ A A+ ++D+VID+ + + R++G+GL L + Sbjct: 462 VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTNVAHYLAKNY 521 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+S E E S++ AS+ LA+ERG + + + +G P + + Sbjct: 522 VNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMQFTKYPEGWVPPKTANRKID 581 Query: 732 VRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + R WD+L +R+K G+RNS A P + + + + P + Sbjct: 582 EK----HDAKLRYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNGLYPIRDFIL 637 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K + +G+ + ++LK ++ A++ Sbjct: 638 TKKSATGNVLFIVPDY--------------------------------EELKYVYEIAWD 665 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKTTYYLRS 905 ID LI+ + QK+ QA S + Y+D KK+ A +G+KT YYL S Sbjct: 666 IDTFDLIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVGMKTMYYLNS 725 Query: 906 R 906 R Sbjct: 726 R 726 >gi|229818598|ref|YP_002880124.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia cavernae DSM 12333] gi|229564511|gb|ACQ78362.1| ribonucleoside-diphosphate reductase, alpha subunit [Beutenbergia cavernae DSM 12333] Length = 701 Score = 324 bits (829), Expect = 6e-86, Method: Composition-based stats. Identities = 176/712 (24%), Positives = 294/712 (41%), Gaps = 74/712 (10%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R L+K R + + T E +E G + + + Sbjct: 17 GRLQLDKDRSAAREYFLQHVNQNTVFFHNL--KEKLDYLVEHGYYESEVLGKYSREFVEH 74 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338 + + ++ +LG Y Y L +G R E + + VA+ LA E+ Sbjct: 75 IFDVAYAKKFRFTTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLA---DGDEQL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A+E + + S F +TPT N+G +L SCFL + D++ I + L+K Sbjct: 132 ALELVDEVISGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIARGINSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H Sbjct: 192 GGVALLLSNIREYGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YG Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVP 308 Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + + ++ + I A ++ + + FE+G+P+I F+D N +P Sbjct: 309 FSEISVTEKYYEMLDDARIRKTKIKAREFFQLLAEIQFESGYPYIVFEDTVNRANPI--K 366 Query: 577 GVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 G + SNLC+EI + + + CNLGS+N+ D L T Sbjct: 367 GRITMSNLCSEILQVSTASSFNDDLSYADTGKDISCNLGSLNIAHA-----MDSPDLGKT 421 Query: 625 IRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + A+R L V D + ++ +K N+ AIGLG M L I Y S E V+ Sbjct: 422 VGVAIRSLTAVSDQTHIWSVPSVEKGNNDSHAIGLGQMNLHGYLARERIHYGSAEGVDFT 481 Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV--------RD 734 + + +HAI+AS ++A ER A++ F S + G F + E Sbjct: 482 NIYFYTVLYHAIAASNQIAIERGSAFAGFSESQYASGEFFDKYTDGVWEPATDRVAQLFA 541 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + ++ ++ W LK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 542 DAEVHIPTQSDWQALKASVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVAPIEIRKE 601 Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G +L DD + +A A+EI Sbjct: 602 GKIGRVYYPAPYL-------------------------------SDDNLEYYADAYEIGY 630 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 631 EKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|301750611|gb|ADK88939.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4] Length = 812 Score = 324 bits (829), Expect = 7e-86, Method: Composition-based stats. Identities = 160/655 (24%), Positives = 272/655 (41%), Gaps = 57/655 (8%) Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKETEK-----------E 336 + GLQ Y + R E + R+A LA + Sbjct: 163 YKVASRGLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWM 222 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLA 394 + F+ L S + STP + N GT + +SC+L + + + Sbjct: 223 EMFQYFFEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNVSTIL 282 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 ++GG+G + IP LK + A N+ +R VC Y+E Sbjct: 283 SHNGGIGLCMQDLNDAQ-------ANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEP 335 Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507 WH D+ L R ++ +R ++ +A W+PDLF KR+ ++ WTLF + Sbjct: 336 WHSDIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETG 395 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DL L+G FE YE+ E+Q + ++ + ++ G P+I FKD Sbjct: 396 GDLSRLHGDAFEKRYESLEKQG------LGERVPIQDIAYAIVRSAAIAGSPFIMFKDAV 449 Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N G + SNLCTEI + + VCNLGS+NL + F + L S +R Sbjct: 450 NRHYIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVR 509 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 V +++ +ID + ++ + R++G+G+ G +A +L + S + + Sbjct: 510 ACVLMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLI 569 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E + A+ S L + F S++ +GVF + R Sbjct: 570 AEVMLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVF---HWERFPDARPAFP------GE 620 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L++ +K G+RNS +A+ PT T + + VS+S P + N++ K G+ N Sbjct: 621 WELLRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNIL 680 Query: 806 LVNELKQR--DLWDEAMISDLKYHDGS-IGNIERI-PDDLKKIHATAFEIDPMWLIESAS 861 L+ EL++ A++ L + S + + + PD TAF+ LI+ + Sbjct: 681 LMRELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCA 740 Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++D +QS+ LY+ E + + A+ GLKT YY + R AT+ Sbjct: 741 DRAPYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795 >gi|159146680|gb|ABW90784.1| ribonucleotide reductase large subunit [Leporid herpesvirus 4] Length = 812 Score = 324 bits (829), Expect = 7e-86, Method: Composition-based stats. Identities = 160/655 (24%), Positives = 272/655 (41%), Gaps = 57/655 (8%) Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKETEK-----------E 336 + GLQ Y + R E + R+A LA + Sbjct: 163 YKVASRGLQSALKYEEFYLKPFSPDRRESVLQLYTRIAGHLACRSESMCRVALGKNGTWM 222 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLA 394 + F+ L S + STP + N GT + +SC+L + + + Sbjct: 223 EMFQYFFEHLHSHTIVPSTPAMLNLGTTNCYTASCYLLNPQTSTVKSSLSAITGNVSTIL 282 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 ++GG+G + IP LK + A N+ +R VC Y+E Sbjct: 283 SHNGGIGLCMQDLNDAQ-------ANQISTIPVLKALDSLVAAHNKNSRRPTGVCVYIEP 335 Query: 455 WHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEV 507 WH D+ L R ++ +R ++ +A W+PDLF KR+ ++ WTLF + Sbjct: 336 WHSDIRALLRTRGVLAGEEAQRCDNIFSAMWMPDLFFKRLIRYLDGDKDVVWTLFDGETG 395 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 DL L+G FE YE+ E+Q + ++ + ++ G P+I FKD Sbjct: 396 GDLSRLHGDAFEKRYESLEKQG------LGERVPIQDIAYAIVRSAAIAGSPFIMFKDAV 449 Query: 568 NIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 N G + SNLCTEI + + VCNLGS+NL + F + L S +R Sbjct: 450 NRHYIYDTQGSAISCSNLCTEIVHPADQSMSGVCNLGSVNLAQCVLDGAFSFALLRSAVR 509 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 V +++ +ID + ++ + R++G+G+ G +A +L + S + + Sbjct: 510 ACVLMVNIMIDTTSMPTVRCRRGQNRLRSMGIGMQGLHTACLMLGLDMVSEDFRRLNRLI 569 Query: 687 MEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E + A+ S L + F S++ +GVF + R Sbjct: 570 AEVMLLSAMQTSNALCIHGAPTFRDFPKSMYSKGVF---HWERFPDARPAFP------GE 620 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W+ L++ +K G+RNS +A+ PT T + + VS+S P + N++ K G+ N Sbjct: 621 WELLRRSIKRYGLRNSQFVALMPTVTSSQVSDVSESFAPMFTNMFSKVTKDGEMLRPNIL 680 Query: 806 LVNELKQR--DLWDEAMISDLKYHDGS-IGNIERI-PDDLKKIHATAFEIDPMWLIESAS 861 L+ EL++ A++ L + S + + + PD TAF+ LI+ + Sbjct: 681 LMRELRRVFGTPLPHAILDALDKNQWSVVKALPCLSPDSPLARFKTAFDYSQEDLIDLCA 740 Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++D +QS+ LY+ E + + A+ GLKT YY + R AT+ Sbjct: 741 DRAPYVDHSQSMTLYVTERADGTLPASVITRLLVHAYKRGLKTGMYYCKVRKATN 795 >gi|260904341|ref|ZP_05912663.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium linens BL2] Length = 693 Score = 323 bits (828), Expect = 8e-86, Method: Composition-based stats. Identities = 175/676 (25%), Positives = 287/676 (42%), Gaps = 64/676 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +E+ + + + L+ + +LG Y Y L +G Sbjct: 39 KEKLDYLVEKEYYEPEVLDQYSFDFIEELSKHAYSAKFRFQTFLGAFKFYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA E A + + + F +TPT N+G + +L Sbjct: 99 KRYLERFEDRVVMVALFLA---RGDETLAKQLVDEIIHGRFQPATPTFLNAGKKQRGELV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIRESGAPIKKIENQSSGVIPVMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ +FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISAVALWR 547 + +N LFSP D+ +YG F E YE D IK + I+A ++ Sbjct: 276 FELAKRNEDMYLFSP---YDVERVYGMPFSDVNVTEKYEEMVDNAAIKKNK-INAREFFQ 331 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----- 602 + + FE+G+P++ F+D N +P G + SNLC+EI S + Sbjct: 332 TLAEIQFESGYPYVMFEDTVNKANPI--DGKIIMSNLCSEILQVSEPSKYDSDLGYDVVG 389 Query: 603 --GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659 S NL + D TI TA+R L V + + ++ + N AIGLG Sbjct: 390 KDISCNLGSLNIALTMDSTDFGQTIETAIRGLTAVAETSDIQSVPSIARGNDMSHAIGLG 449 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718 M L HI Y S E ++ + +++H + AS+E+A+ER ++ F+ S + Sbjct: 450 QMNLHGYLAREHIYYGSDEGLDFTNMYFYTVAYHCVRASMEIAKERKTAFAGFERSKYAS 509 Query: 719 GVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 G + + E R E ++ ++ W ELK V G+ N N A+ PT Sbjct: 510 GEYFDKYTDEVWEPRTRRVAEMFTEAGVHIPTQDDWRELKAAVAEHGIYNQNLQAVPPTG 569 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + ++ G F+ N Sbjct: 570 SISYINNSTSSIHPVASKVEIRKEGKIGRVYYPAPFMDN--------------------- 608 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFI 888 D+LK + A+EI +I++ + K +DQ SL L ++D + + ++ Sbjct: 609 ---------DNLK-YYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFMDTATTRDINKA 658 Query: 889 YRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 659 QIYAWRKGIKTIYYIR 674 >gi|228473105|ref|ZP_04057862.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga gingivalis ATCC 33624] gi|228275687|gb|EEK14464.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga gingivalis ATCC 33624] Length = 551 Score = 323 bits (827), Expect = 1e-85, Method: Composition-based stats. Identities = 173/642 (26%), Positives = 266/642 (41%), Gaps = 121/642 (18%) Query: 285 LKYERD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRA 339 + E D + QIL Y L E + R+ A L E + Sbjct: 1 MNQENDIWWLNDESEQILNRGYLLKG-----ESVEGAIERITSAAAKRLYKPELQP---- 51 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 F +++ S+P N GT SCF +PD + GI L E M K GG Sbjct: 52 -AFKEMITKGWISFSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGG 110 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + +R G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D Sbjct: 111 TSGYFGELRHRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDA 169 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEFL ++ D ++ +PD +M+ + + E Sbjct: 170 EEFLQIK----DTGYHIQNLFFGVCVPDYWMQEMIEGDT--------------------E 205 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV--- 576 LW ++L + G P+I F D N + PQ + Sbjct: 206 KR----------------------KLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNN 243 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 +H+SNLC+EI L SS EE+ +C L S+NL FD K ++ A+ LD V+ Sbjct: 244 MFIHASNLCSEIMLPSSEEESFICCLSSMNLE------LFDEWKDTKAVKLAIFFLDAVL 297 Query: 637 DINCHTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 + HRA+GLG++G+ S L IP+ S EA + + + I Sbjct: 298 SEFIEKTKGNYYLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFQHI 357 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELK 750 A A+ ELA G KG Sbjct: 358 QSEAEKATQELAHIYGEPELLKG------------------------------------- 380 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNE 809 G RN+ MAIAPT + + I G VS I+P N Y G+F N +L Sbjct: 381 -----YGRRNATTMAIAPTTSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNKYLTQL 435 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L+++ L +E + ++ DGS+ +++ + + K + T EI PM +I A++RQ++IDQ Sbjct: 436 LEEKGLNNEDIWRSIRLSDGSVQHLQELTQEEKNVFKTFKEISPMEIITQAAQRQQYIDQ 495 Query: 870 AQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +QSLNL + + ++ + +AW +G+K+ YY RS+S Sbjct: 496 SQSLNLNIPPTMPIRDVNKVLIEAWKLGVKSLYYQRSQSVAK 537 >gi|224826411|ref|ZP_03699513.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Lutiella nitroferrum 2002] gi|224601512|gb|EEG07693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Lutiella nitroferrum 2002] Length = 949 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 150/629 (23%), Positives = 264/629 (41%), Gaps = 76/629 (12%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY 381 RVA LA E E + F++ L F+ +GT L +CF+ V D + Sbjct: 37 RVARALAGIEAEPARYEAAFFDALQRG-FIPGGRINSAAGTELKATLINCFVQPVGDAVS 95 Query: 382 -------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 GI+ AL + A + GG+G +++ +R GA + GT+ ++ G + +++V + + Sbjct: 96 ESEGGKVGIYEALLQAAETMRRGGGVGYNFSRIRPKGARVKGTHSRASGPVSYMRVFDRS 155 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V G R+GA L H DVE+F+ + D+ + N + + D FM+ V Sbjct: 156 CETVESAGSRRGAQMGVLNIEHPDVEDFIHAK-----DQGDLKNFNISVGVSDAFMQAVE 210 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + W L V D + + F + V+R + A LWR+++ + Sbjct: 211 ADGPWQLV--HAVEPASDAFPEAFRR----------DDGLWVYRTVRARELWRQIMESTY 258 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 + P + F N + + V+ S+N C E L + C+LGSINL A + Sbjct: 259 DHAEPGVLFLSQINRDNNLSYCEVIESTNPCGEQPLP----DYGCCDLGSINLAAFVEHP 314 Query: 615 Q-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 FD+ + +R+A+R+LDNV+D+ + + ++ R +GLG G AL L Sbjct: 315 FTRRARFDFKAFETVVRSAIRMLDNVLDLTVWPLPEQQREAQAKRRVGLGFTGLGDALIL 374 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 L I Y SP+ ++A + E + A ASV+LA E+GA+ F + Sbjct: 375 LQIAYNSPQGRQMAAKFAETMRDAAYDASVDLAIEKGAFPLFDADNY------------- 421 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQ 787 LA + + +K R++ G+RNS+ ++IAPT TI+ S I+P + Sbjct: 422 ------LAEPHCASRLPEAIKARIRQHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFS 475 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY-HDGSIGNIERIPDDLKKIHA 846 Y + + + Q++ E L + G + + L Sbjct: 476 WYYTRKKR-----------MADGSQQEYRVEDHAYRLYRLNGGDV-------EKLPPYFV 517 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +A E+ + ++ + +ID A S + + + + + +Y +AW GLK R Sbjct: 518 SALEMSALDHMQMVAAVAPYIDTAISKTVNVPADYPFDEFEHLYLEAWKAGLKGITTYRP 577 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 S S + + + + Sbjct: 578 NSVLGSVLSVEPAQAAPQDLLASQEGDPD 606 >gi|38707873|ref|NP_944991.1| Ribonucleoside triphosphate reductase, alpha chain [Enterobacteria phage Felix 01] gi|33340476|gb|AAQ14827.1| putative ribonucleoside triphosphate reductase alpha chain [Enterobacteria phage Felix 01] Length = 744 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 165/781 (21%), Positives = 297/781 (38%), Gaps = 78/781 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 I +GT++SF+ +RL A + + V E K +Y+G + ++ A+I Sbjct: 4 TIKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDV 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +E Y+ + R LL + +E K P T F + +E Sbjct: 62 CVDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNMERAGL 108 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323 + +L YL + + +D ++ Y L+ D+Y + G E PQ FM Sbjct: 109 WEKMD--YSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMG 166 Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +AM + + + ++ Y LS TP L +SC L D Sbjct: 167 MAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 + A + + G+G R +G I + G +P+ K+ + A N+ Sbjct: 227 SLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEA-NKQ 284 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R G+ + +E+ L L+ T +R ++M+ + D F + V + W L Sbjct: 285 KSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLL 344 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FS + L+D++ + A +K R++ A + + + + TG + Sbjct: 345 FSYKDAPKLYDMFYTASADEFAMAVGHAVHSGVK-HRRVKAREIAKLFIQQRYATGRVYP 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----------GSINLLAHF 611 F + N +P + SNLC EI L E ++ LA Sbjct: 404 FFTNNANTHTPF--KEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFLASL 461 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+ A A+ ++D+VID+ + + R++G+GL L + Sbjct: 462 VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTNVAHYLAKNY 521 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+S E E S++ AS+ LA+ERG K + + +G P + + Sbjct: 522 VNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGWVPPKTANKKID 581 Query: 732 VRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + R WD+L +R+K G+RNS A P + + + + P + Sbjct: 582 EK----HDAKLRYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNGLYPIRDFIL 637 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K + +G+ + ++LK ++ A++ Sbjct: 638 TKKSATGNVLFIVPDY--------------------------------EELKYVYEIAWD 665 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKTTYYLRS 905 ID +I+ + QK+ QA S + Y+D KK+ A +G+KT YYL S Sbjct: 666 IDTFDMIDCYAIVQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVGMKTMYYLNS 725 Query: 906 R 906 R Sbjct: 726 R 726 >gi|251797975|ref|YP_003012706.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. JDR-2] gi|247545601|gb|ACT02620.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. JDR-2] Length = 864 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 139/619 (22%), Positives = 256/619 (41%), Gaps = 61/619 (9%) Query: 312 SRIEMPQAFFMRVA---MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 + + P+ + R+A G+ E ++ F +L + + +G Sbjct: 81 TIEKTPEEMWNRLAGAMAGVEQGEEKRRTWTERFRYILDDWKLVPGGRIAAGAGASDELT 140 Query: 368 LSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 L +C++ P D GI L E + GG+G + + +R A + G NG S G + Sbjct: 141 LFNCYVIPSPKDSRGGIMTTLSEMTEIMARGGGVGINLSSLRPRRAVVAGVNGSSSGAVS 200 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 + + + T + QGG R+GA+ + WH DV +F+ +++ G + + N + + Sbjct: 201 WGGLFSYTTGLIEQGGSRRGALMLMINDWHPDVLDFITVKQTMG----QVTNANLSVCVS 256 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + FMK V ++ W L PD +D A++ ++ ++ + A +W Sbjct: 257 NAFMKAVKEDLDWELVFPDTKETDYDELWDGDLEAWKKLGKKVVH-----YKTVRARDVW 311 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ +++ P + F + N S + + +N C E L VCNL +IN Sbjct: 312 HTIIESAWKSAEPGVVFMEYYNQMSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAIN 367 Query: 607 LLAHFANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 L + ++ D +++L + +VR LDNVID + E+ +K+ R +GLG MG Sbjct: 368 LSKFYDESKHDVNWEELGKVTQWSVRFLDNVIDTTPYHFEENEKNQKKERRVGLGTMGLA 427 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L + Y SPE++ D+ F++ A AS E+A E+G++ +F + Q F + Sbjct: 428 ELMIKLGVRYGSPESLLFLDKIYGFMAREAYLASAEIASEKGSFEAFDAEKFLQSGFMKN 487 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + + E+ + V GMRN + APT + + G S I+P Sbjct: 488 MV-----------------SEFPEVGEAVLAKGMRNVTVITQAPTGSTGTMVGTSTGIEP 530 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + Y + + G + LV + W + H G ++L Sbjct: 531 YFAFEYFRQSRLG----FDKQLVPIAQA---WKD-------AHPG---------EELPDY 567 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 TA + I + Q+W+D + S + + ++ +Y A+ +G K Sbjct: 568 FVTAMNLSAKDHIRVQAAIQRWVDSSISKTANCPSDFTVEETKELYEMAFDLGCKGVTIY 627 Query: 904 RSRSATSVEKSTLKGVDGK 922 R S ST K + Sbjct: 628 RDGSRDVQVLSTKKDDEKP 646 >gi|213963757|ref|ZP_03392007.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sputigena Capno] gi|213953637|gb|EEB64969.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sputigena Capno] Length = 551 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 174/639 (27%), Positives = 264/639 (41%), Gaps = 115/639 (17%) Query: 285 LKYERD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAM-GLALKETEKEKRAVEF 342 + E+D + QIL Y L G +E R A L E + F Sbjct: 1 MNEEKDIWWLNEESEQILNRGYLLK--GESVEGAIDRITRAAAQRLYKPELQP-----AF 53 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 +++ S+P N GT SCF VPD + GI L E M K GG Sbjct: 54 KEMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSG 113 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D EEF Sbjct: 114 YFGELRSRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEF 172 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 L ++ D ++ +PD +M+ + Sbjct: 173 LQIK----DVEFPIQNLFFGICVPDYWMQEMIDGD------------------------- 203 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVV 579 + LW ++L + G P+I F D N PQ + ++ Sbjct: 204 -----------------VEKRRLWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMII 246 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 SSNLC+EI L SS +E+ +C L S+NL FD K ++ AV LD V+ Sbjct: 247 RSSNLCSEIMLPSSEDESFICCLSSMNLE------LFDEWKDTKAVKLAVFFLDAVLSEF 300 Query: 640 CHTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 + HRA+GLG++G+ S L IP+ S EA + + ++I Sbjct: 301 IEKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFKYIREE 360 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 A A+ ELA G KG Sbjct: 361 AEKATKELAHIYGEPEVLKG---------------------------------------- 380 Query: 754 KTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 G RN+ MAIAPT + + I G VS I+P N Y G+F N +L L++ Sbjct: 381 --YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEE 438 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + L +E + ++ ++GS+ +++ + K + T EI PM +I A++RQ +IDQ QS Sbjct: 439 KGLNNEDVWRSIRLNNGSVQHLQELTQQEKNVFKTFKEISPMEIISQAAQRQAYIDQTQS 498 Query: 873 LNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 LNL + K ++ + +AW +G+K+ YY RS+S Sbjct: 499 LNLNIPSVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVAK 537 >gi|119897702|ref|YP_932915.1| putative ribonucleoside reductase [Azoarcus sp. BH72] gi|119670115|emb|CAL94028.1| conserved hypothetical ribonucleoside reductase [Azoarcus sp. BH72] Length = 958 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 152/638 (23%), Positives = 249/638 (39%), Gaps = 80/638 (12%) Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------G 382 E ++ +F F+ + +GT L +CF+ V D + G Sbjct: 54 PEEKRAHWEAKFLE-AQEKGFVPAGRINSAAGTSLAATLINCFVQPVGDSVTEAVDGRPG 112 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ AL + A + GG+G D++ +R GA + GT + G + +++V + + V G Sbjct: 113 IYTALAQAAETMRRGGGVGYDFSSIRPKGAMVRGTASNASGPVSYMRVFDRSCETVESAG 172 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA L H D+EEF+ + D + N + + D FM+ V + L Sbjct: 173 ARRGAQMGVLRCDHPDIEEFIHAK-----DHGDLTNFNISVGVTDDFMRAVESDGDIELT 227 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 E SD G V+RK+ A ALW +++ ++ P I Sbjct: 228 HKSEPSDELKAAGAYQRDDGRW-----------VYRKVPARALWDQVMRSTYDHAEPGIL 276 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FD 617 F D N + + + ++N C E L C LGS+NL N FD Sbjct: 277 FLDRMNQDNNLYYCETIEATNPCAEQPLPPY----GCCCLGSVNLTPFVKNPFTDKAEFD 332 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y + ++R+LDNV+D +E+ ++ + R +GLG G AL +L Y S Sbjct: 333 YAAFGKVVDVSIRMLDNVLDATHWPLEQQQREADSKRRVGLGFTGLGDALIMLGKRYDSD 392 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA E A + E++ A AS ELA+ERGA+ F ++ G Sbjct: 393 EAREEARKISEYMRNRAYLASTELAKERGAFPLFNADMYLSGGNF--------------- 437 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795 + E+K +++ G+RNS+ ++IAPT TI+ S I+P + Y + Sbjct: 438 ----ASRLPAEVKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFSYTYTRRKR 493 Query: 796 --SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G F + V + K+ G++ + L TA EI Sbjct: 494 MADGTFK---EYAVEDYA---------WRLYKHLGGNV-------EQLPSYFVTALEISA 534 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + + +ID + S + + + + +Y AW GLK R S Sbjct: 535 QAHKDMVAAVAPYIDTSISKTVNVPEDYPYADFEDLYLTAWKAGLKGLATYRPNSVLGSV 594 Query: 913 KS---TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 S T + +P + S SL P + Sbjct: 595 LSVAPTSEQKQPHDVEIPDANKRLSIKSLPAPVLASLR 632 >gi|256825535|ref|YP_003149495.1| vitamin B12-dependent ribonucleotide reductase [Kytococcus sedentarius DSM 20547] gi|256688928|gb|ACV06730.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Kytococcus sedentarius DSM 20547] Length = 985 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 130/631 (20%), Positives = 235/631 (37%), Gaps = 34/631 (5%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G E + E L F ++P FN GT+ Q+S+CF+ +V D + I Sbjct: 110 GYFATEDDALVFEHELTYALLHQIFSFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILN 169 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 170 WYREEGFIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 228 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+ EF+D + D R D + Sbjct: 229 RAAKMVVLDVDHPDIVEFIDTKAREEDKIRALRDAGF----------DMDLGGDDITSVQ 278 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWIT 562 + ++ EF A EN E R V ++A L+ +M +E P I Sbjct: 279 YQNANNSVRVSDEFMRAVENGEEFGLRSRSTGDVIETVNAADLFTRMAKAAWECADPGIQ 338 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKL 621 + D N G +++SN C+E S + + CNL S+NLL ++ FD ++ Sbjct: 339 YDDTINHWHTNPESGRINASNPCSEYM----SLDNSSCNLASLNLLKFLNDDDTFDVERF 394 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + +D I + ++ R +G+G + L Y S + Sbjct: 395 QAVTELVITAMDISICFADFPTDPIGETTRNFRQLGIGYANLGALLMATGHGYDSEGGRQ 454 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN-- 739 +A ++ + S ELA G Y+ + + AE+ M+ Sbjct: 455 LAAAITSLLTGASYKRSAELAAVVGPYNGYARNAEAHNRVMRQHRDANAELAPLHEMDAH 514 Query: 740 --RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNM 795 + WD + G RN+ +APT TI + + I+P + + + K Sbjct: 515 IQDAATEAWDAVVALGDEHGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVG 574 Query: 796 SGDFTVVNSFLVNELKQRDLW---DEAMISDLKYHDGSIGNIERIPDDLKKIHATAF--- 849 G +VN + LK +A++ + H G + + + ++ +I TA Sbjct: 575 GGSMQIVNQTIPRALKLLGYDQAATDAIVEYIAEH-GHVVDAPGLAEEHYEIFDTAMGER 633 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I PM + + Q ++ A S + L E + ++++ +Y + W GLK R Sbjct: 634 AIAPMGHVRMMAAVQPFLSGAISKTVNLPERATVEEIEEVYLEGWKSGLKALAVYRDNCK 693 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 S+ KG + +S + Sbjct: 694 VGQPLSSGKGENKGSADDGTPASEASAAPVE 724 >gi|326772790|ref|ZP_08232074.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces viscosus C505] gi|326637422|gb|EGE38324.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces viscosus C505] Length = 718 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 180/750 (24%), Positives = 305/750 (40%), Gaps = 87/750 (11%) Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +S +L+ + + L + + + AR + + + +K + Sbjct: 11 ETVSSPELDYHALNAKLNLYDADGRIQFDADHEAARQYFLQHVNQNTVFFHDLEEKLEY- 69 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 +EEG + + + + +LG Y Y Sbjct: 70 ------------LVEEGYYEGHILDKYSPEFVKSAFKAAYAHKFRFETFLGAFKYYTSYT 117 Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R E + VA+ LA E+ A++ + + S F +TPT N G Sbjct: 118 LKTFDGKRYLERFEDRVTMVALTLA---DGDEQLALDLVDEMMSGRFQPATPTFLNEGKA 174 Query: 365 HP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + SCFL + D++ I + L+K GG+ + +R +GA I +S G Sbjct: 175 QRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSG 234 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 235 VIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKIS 541 IPD+ + N LFSP D+ +YG F E Y D G IK +KI+ Sbjct: 295 VIPDITFELARNNEDMYLFSP---YDVERVYGMPFADINVTEKYREMVDDGRIKK-KKIN 350 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLN 591 A ++ + + FE+G+P++ F+D N +P + V + E Sbjct: 351 ARTFFQTLAEIQFESGYPYVMFEDTVNKANPIKGKVVMSNLCSEILQVSEPSELNEDLTY 410 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650 + + CNLGS+N+ D A TIRTAVR L V D + ++ + N Sbjct: 411 AHVGKDISCNLGSLNIAKT-----MDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGN 465 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709 H AIGLG M L I Y S E ++ + + F A++AS E+A ER ++ Sbjct: 466 HESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFV 525 Query: 710 SFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 F+ S + G F + + E+ +++ +R W EL +++K G+ N Sbjct: 526 GFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAEKIKKGGLYNR 585 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820 N A+ PT +I+ I + SI P + ++ G F+ N+ Sbjct: 586 NLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND----------- 634 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + + A+EI P +I++ + + +DQ SL L+ + Sbjct: 635 --------------------NLEYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDT 674 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + + ++ AW G+KT YY+R R A Sbjct: 675 ATTRDVNRAQIYAWRKGIKTLYYIRLRQAA 704 >gi|38638229|ref|NP_944412.1| ribonucleotide reductase subunit 1 [Psittacid herpesvirus 1] gi|81987372|sp|Q6UDJ2|RIR1_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=Ribonucleotide reductase large subunit gi|34500235|gb|AAQ73718.1| ICP6 [Psittacid herpesvirus 1] Length = 811 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 165/703 (23%), Positives = 258/703 (36%), Gaps = 90/703 (12%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-------------- 341 + Y + R+E FF+R+A A + A Sbjct: 155 QSARKFESMYLGKLKNGRLESVGQFFLRIAAEAARGVANNDAFAAAVFRDGTRAPDANTV 214 Query: 342 ---FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQENAMLAKY 396 F+ L + TP + +GT +SCFL V + +E + Sbjct: 215 FCLFFMALCRQEIVPPTPVMLFAGTESRSYASCFLLDVRGRHTRDVLTSIAEEIIPVMHS 274 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+G + S G++ LK + A N R +C Y+E WH Sbjct: 275 HGGIGLYMDC-------DSNWDDNSSGMMLALKALDSIIAASNAVSARPSGLCVYVEPWH 327 Query: 457 IDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 D+ + L R ++ R + A W+PDLFMKR N WTLF L DLYG Sbjct: 328 RDIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLFDGRAAH-LSDLYG 386 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +EFE YE ER+ A + ++ TG P++ FK N Sbjct: 387 EEFEKEYELLERKNV-----GIATYPARDVMFALIKSAVSTGTPFVMFKHAVNRNYFFDM 441 Query: 576 VGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ----------FDYDKLAST 624 G + SNLCTEI + E VCNL S+NL A FDY Sbjct: 442 AGRAMKCSNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPGTPPIGTFDYSSFRDA 501 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 A ++ ++ ++ I++A N R+IG+G+ GF +A L S EA Sbjct: 502 CAVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLLQGFGLDSVEACRFNG 561 Query: 685 ESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 + E ++ S + + + F S + +G +D Sbjct: 562 KLFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPA----------RHLYF 611 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 WD L++ +K G+ N +A+ PTA+ + + VS+ I P + N++ K +G+ +N Sbjct: 612 DGWDRLRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIFSKITTTGEDIQLN 671 Query: 804 SFLVNELKQRDLWDEAMISDLKY---HDGSIGNI--ERIP-DDLKKIHATAFEIDPMWLI 857 L+ ++ L+ + S +P TAFE D L+ Sbjct: 672 VALMETIECLYPNKAERRDILERLHKNKWSTRGAFGAALPSQHPLTKFDTAFEADQEHLL 731 Query: 858 ESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 ++ R ++D +QS LY+ E ++ + A+ GLKT YY + R AT Sbjct: 732 RLSADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMYYCKVRKATD- 790 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 N V + D C CQ Sbjct: 791 ------------NGVFLGTDT----------CRRDDPTCLACQ 811 >gi|329947188|ref|ZP_08294512.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328525700|gb|EGF52726.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 718 Score = 322 bits (825), Expect = 2e-85, Method: Composition-based stats. Identities = 182/750 (24%), Positives = 303/750 (40%), Gaps = 87/750 (11%) Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +S DL+ + + L + + AR + + + +K + Sbjct: 11 ETVSSPDLDYHALNAKLNLYDANGRIQFDADHEAARQYFLQHVNQNTVFFHDLEEKLEY- 69 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 +EEG + + + + +LG Y Y Sbjct: 70 ------------LVEEGYYEGHILDKYSPEFVKDAFKAAYAHKFRFETFLGAFKYYTSYT 117 Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R E + VA+ LA E+ A++ + + S F +TPT N G Sbjct: 118 LKTFDGKRYLERFEDRVTMVALTLA---DGDEQLALDLIDEMMSGRFQPATPTFLNEGKA 174 Query: 365 HP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + SCFL + D++ I + L+K GG+ + +R +GA I +S G Sbjct: 175 QRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSG 234 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 235 VIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKIS 541 IPD+ + N LFSP D+ +YG F E Y D G IK +KI+ Sbjct: 295 VIPDITFELARNNEDMYLFSP---YDVERVYGMPFADVNVTEKYHEMVDDGRIKK-KKIN 350 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLN 591 A ++ + + FE+G+P++ F+D N +P + V + E Sbjct: 351 ARTFFQTLAEIQFESGYPYVMFEDTVNKANPIKGKVVMSNLCSEILQVSEPSRLNEDLTF 410 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650 + + CNLGS+N+ D A TIRTAVR L V D + ++ + N Sbjct: 411 AHVGKDISCNLGSLNIAKT-----MDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGN 465 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709 H AIGLG M L I Y S E ++ + + F A++AS E+A ER ++ Sbjct: 466 HESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFACVLFAALTASNEMAVERGESFV 525 Query: 710 SFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 F+ S + G F + + E+ +++ +R W EL +VK G+ N Sbjct: 526 GFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAAKVKKGGLYNR 585 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820 N A+ PT +I+ I + SI P + ++ G F+ N+ Sbjct: 586 NLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND----------- 634 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + + A+EI P +I++ + + +DQ SL L+ + Sbjct: 635 --------------------NLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDT 674 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + + ++ AW G+KT YY+R R A Sbjct: 675 ATTRDVNRAQIYAWRKGIKTLYYIRLRQAA 704 >gi|146301801|ref|YP_001196392.1| ribonucleotide-diphosphate reductase subunit alpha [Flavobacterium johnsoniae UW101] gi|146156219|gb|ABQ07073.1| ribonucleoside-diphosphate reductase, alpha chain [Flavobacterium johnsoniae UW101] Length = 565 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 165/623 (26%), Positives = 257/623 (41%), Gaps = 112/623 (17%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 QIL Y L E + R+ A + + E + F ++ S+P Sbjct: 30 QILNRGYLLKG-----ETVEGAIDRICTAAARRLYKPELK-ESFVEMIERGWMSISSPVW 83 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF VPD + GI L E M K GG + +R G+ + N Sbjct: 84 ANMGTERGLPISCFNVHVPDKIEGITHKLGEVIMQTKIGGGTSGYFGELRERGSAVTD-N 142 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 GKS G + F+K+ + ++QGG R+GA AYL+ H D+EEFL ++ + Sbjct: 143 GKSSGAVSFMKLFDTAMDTISQGGVRRGAFAAYLDIDHPDIEEFLKIKSIG----NPIQN 198 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 + T +PD +M+ + Sbjct: 199 LFTGICVPDYWMQEMIDGDA---------------------------------------- 218 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSE 595 +W K+L + G P+I F D N PQ + +++SNLC+EI L S+ + Sbjct: 219 --DKRQIWAKVLESRQQKGLPYIFFSDNVNKNKPQVYKDQNLRINASNLCSEIMLPSTHD 276 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK------KS 649 E+ +C L S+NL ++ K ++ A+ LD V+ E K Sbjct: 277 ESFICCLSSMNLE------LYEEWKDTEAVKLAIFFLDAVLQEFIEKTEGNYYLSAANKF 330 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 HRA+GLG++G+ S L IP+ EA E + IS A AS ELA+ G Sbjct: 331 AKRHRALGLGVLGWHSYLQKNMIPFEGMEAKMKTTEIFKHISDKADKASQELARIYGEPE 390 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 KG G RN+ MAIAPT Sbjct: 391 LLKG------------------------------------------YGRRNTTTMAIAPT 408 Query: 770 ATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + + I G S I+P N Y G+F N +L L+++ L +E + + + Sbjct: 409 TSSSAILGQTSPGIEPFSSNYYKAGLSKGNFMRKNKYLKKLLEEKGLDNEEVWRGIMLNG 468 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 GS+ ++ ++ K + T EI + +++ A RQK++DQ QSLNL + E + K ++ Sbjct: 469 GSVQHMSQLTQQEKDVFKTFKEISQLEIVQQAGIRQKFVDQGQSLNLNIPAELAIKDVNR 528 Query: 888 IYRQAWLMGLKTTYYLRSRSATS 910 + +AW G+K+ YY RS+S + Sbjct: 529 LMIEAWQQGVKSLYYQRSQSVSK 551 >gi|332882773|ref|ZP_08450384.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679275|gb|EGJ52261.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 551 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 258/633 (40%), Gaps = 120/633 (18%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348 QIL Y L E + R+ A L E + F +++ Sbjct: 10 LNEESEQILNRGYLLKG-----ESVEGAIDRITHAAARRLYKPELQP-----AFKEMITK 59 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 S+P N GT SCF VPD + GI L E M K GG + +R Sbjct: 60 GWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSGYFGELR 119 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D EEFL ++ Sbjct: 120 SRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFLQIK-- 176 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D ++ +PD +M+ + Sbjct: 177 --DVEFPIQNLFFGICVPDYWMQEMIDGD------------------------------- 203 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585 + LW ++L + G P+I F D N PQ + ++ SSNLC Sbjct: 204 -----------MEKRRLWARVLESRQQKGLPYIMFTDNANRNRPQVYKDKDMLIRSSNLC 252 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 +EI L SS EE+ +C L S+NL FD K ++ AV LD V+ + Sbjct: 253 SEIMLPSSEEESFICCLSSMNLE------LFDEWKDTKAVKLAVFFLDAVLSEFIEKTKG 306 Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 K HRA+GLG++G+ S L IP+ S EA + + I A A+ Sbjct: 307 NYYLQAARKFAMRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARTFRHIREEADKATK 366 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA G KG G R Sbjct: 367 ELAHIYGEPELLKG------------------------------------------YGRR 384 Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 N+ MAIAPT + + I G VS I+P N Y G+F N +L L+++ L +E Sbjct: 385 NTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEEKGLNNE 444 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + ++ ++GS+ +++ + K + T EI PM ++ A++RQ +IDQ QSLNL + Sbjct: 445 DVWRSIRLNNGSVQHLQELTQLEKNVFKTFKEISPMEIVSQAAQRQAYIDQGQSLNLNIP 504 Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 K ++ + +AW +G+K+ YY RS+S Sbjct: 505 SVMPIKDVNKVMIEAWKLGVKSLYYQRSQSVAK 537 >gi|330823092|ref|YP_004386395.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans K601] gi|329308464|gb|AEB82879.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans K601] Length = 811 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 145/663 (21%), Positives = 249/663 (37%), Gaps = 79/663 (11%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFM 352 + + +L ++YF + F RVA LA +E +E F + L + Sbjct: 16 PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDIREAMQARFLDNLRAGAIG 71 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D GI+ AL+E A + GG+G D+ Sbjct: 72 AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L G E Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWELVH-------SAAPGAELLKEGAR 240 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++R + A LW ++ ++ P I F D N + + + ++N Sbjct: 241 QRADGQ----WIYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637 C E L C+LG I L N FD+D + T VR LDNV+D Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + + + R IG+G G + L +L Y + ++A + E + A A Sbjct: 353 VTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYRA 412 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SVELA+E+GA+ F+ LA + ++++K+++ G Sbjct: 413 SVELAKEKGAFPKFQ-------------------ADGYLAKGTFASRLPEDIQKQIRKHG 453 Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 +RNS+ ++IAPT T++ S I+P + Y + D + + ++V + Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYA---- 508 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 K G + + +A ++ + Q ++D A S + Sbjct: 509 -----WRLYKTLGGDVNQLP-------AYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + + +Y QAW GLK R S + P +P Sbjct: 557 NVPEDYPYDDFKGLYMQAWHSGLKGLATYRPNSILGAVLEVPAAEAKPAKSEPAPEPVQP 616 Query: 935 THS 937 Sbjct: 617 FDP 619 >gi|328907286|gb|EGG27052.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium sp. P08] Length = 974 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 133/651 (20%), Positives = 240/651 (36%), Gaps = 65/651 (9%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL F ++P FN T Q+S+CF+ +V D + I Sbjct: 134 GYFASDDDVKIFGEELTWLLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 193 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 194 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 252 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 253 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 312 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 313 SDAFMTAVEQGQPFGLTSRTE--------------------------PGKVLDTVDAKEL 346 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 347 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 402 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL ++ FD + + + +D I E ++ R +G+G Sbjct: 403 NLLKFLDEDDHFDVGRFTKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLG 462 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G Y+ + + I Sbjct: 463 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIK 522 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ + ++ WD++ K +T G RN+ +APT TI + + Sbjct: 523 HRDANRQVHPLHDNDTTVLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDT 582 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836 I+P + + + K G +VN + LK E + Y +GS+ Sbjct: 583 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDNGSVVGAPV 642 Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 643 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 702 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S +K + A P +P S Sbjct: 703 WKLGLKALAVYRDNCKVGQPLSEVKKTEEDEKAEPEVRIEYRPRRQRLPKS 753 >gi|313837155|gb|EFS74869.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL037PA2] gi|314927822|gb|EFS91653.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL044PA1] gi|314971928|gb|EFT16026.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL037PA3] Length = 949 Score = 322 bits (824), Expect = 3e-85, Method: Composition-based stats. Identities = 133/651 (20%), Positives = 240/651 (36%), Gaps = 65/651 (9%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDVKIFGEELTWLLVHQFFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMTAVEQGQPFGLTSRTE--------------------------PGKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL ++ FD + + + +D I E ++ R +G+G Sbjct: 378 NLLKFLDEDDHFDVGRFTKAVELVITAMDISICFADFPTEAICETTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G Y+ + + I Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYAGYAENTEPHQAVMIK 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ + ++ WD++ K +T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHDNDTTVLTAAKAEWDKVVKLGRTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836 I+P + + + K G +VN + LK E + Y +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLGYTPEQAEKIIAYISDNGSVVGAPV 617 Query: 837 IPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 618 LDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEG 677 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S +K + A P +P S Sbjct: 678 WKLGLKALAVYRDNCKVGQPLSEVKKTEEDEKAEPEVRIEYRPRRQRLPKS 728 >gi|259417280|ref|ZP_05741199.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter sp. TrichCH4B] gi|259346186|gb|EEW58000.1| ribonucleoside-diphosphate reductase, alpha subunit [Silicibacter sp. TrichCH4B] Length = 710 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 181/739 (24%), Positives = 307/739 (41%), Gaps = 83/739 (11%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 +DL+ + + L + E N R + + + H + E Sbjct: 7 TADLDYHALNAMLNLYDDEGNIQFDADRMAARQYFLQ-----HVNQNTVFFHSL----DE 57 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--S 312 +E+G + + + + ++ +LG Y Y L Sbjct: 58 KLGYLVEKGYYEPEVLDQYSRNFHRKIWDAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR 117 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSC 371 +E + RV M EK A++ + + F +TPT N+G + + SC Sbjct: 118 YLERYED---RVVMNALTLARGDEKLAMKLMSEIIDGRFQPATPTFLNAGKKARGEFVSC 174 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I + L+K GG+ T +R GA I G +S GVIP +K+ Sbjct: 175 FLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPVMKLL 234 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 235 EDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 294 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 +N LFSP +V +YG+ F E Y D +I+ +KI+A A ++ + Sbjct: 295 LAKKNEDMYLFSPHDV---EKVYGQAFSEISVTEKYHEMVDNPQIRK-KKINARAFFQTI 350 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I F+D N +P G + SNLC+EI + Sbjct: 351 AEIQFESGYPYIMFEDTVNAANPI--AGRIAMSNLCSEILQVNEASEFNDDLSYAQMGTD 408 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D LA T+ TA+R L+ V ++ + ++ +K N AI Sbjct: 409 ISCNLGSMNIARA-----MDGGDLAGTVGTAIRALNAVSEMSSIDSVPSIRKGNEEGHAI 463 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715 GLG M L I Y S E V+ + + +HA+SAS LA+E+ A + F+ S Sbjct: 464 GLGQMNLHGYLARERIHYGSAEGVDFTNIYFCTVLYHALSASNALAKEKKAKFKGFEDSA 523 Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G F + + E+ + + +R W+ L+ +V G+ N N A+ Sbjct: 524 YADGSFFEKYVGQDWLPETDRVKELFEAAGIEIPTRKDWEALRDKVMKHGLYNRNLQAVP 583 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 584 PTGSISYINYATSSIHPITAKIEIRKEGKIGRVYYPAPYMTND----------------- 626 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885 + + A++I P +I++ + + +DQ SL L+ E S + + Sbjct: 627 --------------NLEYYRDAYDIGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDI 672 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 673 NRAQIYAWKKGIKTIYYIR 691 >gi|167041120|gb|ABZ05880.1| putative Ribonucleotide reductase, barrel domain protein [uncultured marine microorganism HF4000_001A02] Length = 817 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 151/665 (22%), Positives = 263/665 (39%), Gaps = 82/665 (12%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 + + LG +L ++Y E+ Q + + + ++ +FY +L F Sbjct: 52 YKDDSLGADVLKNKYLAPWENHPYELWQ-RQAKALASVERTKKLRDTWEKKFYYILEDFR 110 Query: 351 FMCSTPTLFNSGTRH--PQLSSCFLTTVPDD-LYGIFGALQENAMLAKYSGGLGNDWTPV 407 F + +G L++C++ + DD + I+ ++E A KY GG G+D + + Sbjct: 111 FTPGGRIMHGAGREDITTTLNNCYVVGIQDDSINSIYRTIEEEARTYKYGGGCGHDLSVL 170 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R G I GT G+S G + F+ + ++ + Q G R+GA L H D+E+F++++ Sbjct: 171 RPSGDAIKGTGGESCGPVGFMNLFSENTNTIAQHG-RRGANMQTLRVDHPDIEKFIEIKT 229 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D N + + FM+ V ++ + L D+V Sbjct: 230 G---DIHMVKYSNISVLLTHRFMEAVENDSEFDLKWNDQV-------------------- 266 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 ++ I A LW K++ + P + F D ++ + S+N C E Sbjct: 267 ---------YKTIKARQLWNKIIEHAHTSAEPGLLFWDTMIDYHNAEYCSPLVSTNPCAE 317 Query: 588 ITLNSSSEETAVCNLGSINLLAHFA-NNQFDYDKLASTIRTAVRVLDNVID--INCHTIE 644 L + CNLGSINL F D+ T+ A R LDNVID + H +E Sbjct: 318 QPLP----DGGCCNLGSINLERFVDGEGNFMIDEFKDTVGIATRFLDNVIDYNLERHALE 373 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 K + R IGLG++G L + I Y S +A++ ++ M+ A SVELA E Sbjct: 374 SQKDNATKDRRIGLGILGLGDMLVRMGIKYDSDDAIQTVEQVMQIFRDGAYETSVELANE 433 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G++ SF G I L L ++K G+RNS + Sbjct: 434 KGSFPSFDW----AGYRKSQFIKNLPRN----------------LNNKIKENGIRNSTVL 473 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT + A + V+ I+P + Y + N + ++ +I L Sbjct: 474 TVPPTGSGAIVARVTSGIEPIFATSYTRRVKK------NDGFGKTFNEYKVYHP-IIKKL 526 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGK 883 +D ++L +A +IDP ++ QK+ID + S + L ++ + + Sbjct: 527 FGND----------ENLPDYVISAHDIDPYSRVKMQGVIQKYIDSSISSTVNLKEDVTLE 576 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 + IY A+ GLK R S + + D K + + + I Sbjct: 577 TVADIYMTAYKTGLKGITVYREGSREGILITEKPEKDKKSKDKAGAYQSDTKVNTVIEKR 636 Query: 944 CTSDT 948 Sbjct: 637 PRIRP 641 >gi|111184258|gb|ABH08178.1| HSPV074b [Horsepox virus] Length = 440 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 170/441 (38%), Positives = 257/441 (58%), Gaps = 19/441 (4%) Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D + GI+ L+ A+++K +GG+G + +R G++I GTNG S G+IP L+V N+TA Sbjct: 18 MDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTA 77 Query: 436 VAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 ++QG KR G + YLE WH D+ FLD +KNTG+++ RT D+ A WIPDLFMKRV Sbjct: 78 RYMDQGGNKRPGVMAIYLEPWHSDIMAFLDFKKNTGNEKHRTRDLFIALWIPDLFMKRVK 137 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + W+L DE S L++++G EFE Y +R+ + + A +W+ ++ Sbjct: 138 DDGEWSLMCLDECSGLNNVWGDEFERLYTIRKRKEIQD------YMKARVVWKAIIESQI 191 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ETG P+I +KD CN +S QQ++G + SNLCTEI + + E AVCNL S+ L + Sbjct: 192 ETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFVIDG 251 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 QFD+ KL ++ VR L+ +IDIN + I KA+ SN HR IG+G+ G A LL+ P+ Sbjct: 252 QFDFFKLKDVVKVIVRNLNKIIDINYYPIPKAEISNKRHRPIGIGVQGLADAFILLNYPF 311 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 S EA ++ + E + A+ AS ELA++ G Y S+ S G+ D ++ Sbjct: 312 DSLEAQDLNKKIFET--YGALDASCELAEKEGPYESYVRSYASNGILQYDLWNVVP---- 365 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 + W LK ++KT G+RNS +A PTA+ A I ++S+ P N+Y + Sbjct: 366 ------SDLWNWKPLKDKIKTYGLRNSLLVAPMPTASTAQILENNESVKPYTSNIYTRRV 419 Query: 795 MSGDFTVVNSFLVNELKQRDL 815 +SG+F VVN L+ L ++ L Sbjct: 420 LSGEFQVVNPHLLRVLTEKKL 440 >gi|99080360|ref|YP_612514.1| ribonucleotide-diphosphate reductase subunit alpha [Ruegeria sp. TM1040] gi|99036640|gb|ABF63252.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Ruegeria sp. TM1040] Length = 710 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 180/734 (24%), Positives = 304/734 (41%), Gaps = 73/734 (9%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 +DL+ + + L + E N R + + + H + E Sbjct: 7 TADLDYHALNAMLNLYDDEGNIQFDADRMAARQYFLQ-----HVNQNTVFFHSL----DE 57 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--S 312 +E+G + + + + ++ +LG Y Y L Sbjct: 58 KLGYLVEKGYYEPEVLDQYSRNFHRKIWDAAYAKKFRFPSFLGAFKYYTSYTLKTRDGQR 117 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSC 371 +E + RV M EK A++ + + F +TPT N+G + + SC Sbjct: 118 YLERYED---RVVMNALTLARGDEKLAMKLMSEIIDGRFQPATPTFLNAGKKARGEFVSC 174 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I + L+K GG+ T +R GA I G +S GVIP +K+ Sbjct: 175 FLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSSGVIPVMKLL 234 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 235 EDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 294 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 +N LFSP +V +YG+ F E Y D +I+ +KI+A A ++ + Sbjct: 295 LAKKNEDMYLFSPHDV---EKVYGQAFSEISVTEKYHEMVDNPQIRK-KKINARAFFQTI 350 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNL 602 + FE+G+P+I F+D N +P G + SNLC+EI N + Sbjct: 351 AEIQFESGYPYIMFEDTVNAANPI--AGRIAMSNLCSEILQVNEPSKFNDDLSYEQMGTD 408 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 S NL + D LA T+ TA+R L+ V ++ + ++ +K N AIGLG M Sbjct: 409 ISCNLGSMNIARAMDGGDLAGTVGTAIRALNAVSEMSSIDSVPSIRKGNEEGHAIGLGQM 468 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV 720 L I Y S E V+ + + +HAISAS LA+E+ + + F+ S + G Sbjct: 469 NLHGYLARERIHYGSAEGVDFTNIYFCTVLYHAISASNALAKEKKSKFKGFEDSAYADGS 528 Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F + + E+ + + +R W+ L+ +V G+ N N A+ PT +I Sbjct: 529 FFEKYVEKDWLPETDRVKELFETAGVEIPTRKDWEALRDKVMKHGLYNRNLQAVPPTGSI 588 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G ++ N+ Sbjct: 589 SYINYATSSIHPITAKIEIRKEGKIGRVYYPAPYMTND---------------------- 626 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890 + + A+EI P +I++ + + +DQ SL L+ E S + ++ Sbjct: 627 ---------NLEYYRDAYEIGPEAIIDTYAAATQHVDQGLSLTLFFPAEASTRDINRAQI 677 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 678 YAWKKGIKTIYYIR 691 >gi|157953136|ref|YP_001498028.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus NY2A] gi|155123363|gb|ABT15231.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus NY2A] Length = 1103 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 14/358 (3%) Query: 565 DPCNIRSPQQHVGVVH--SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 D P++H+GV + + C EI +S EETAVC +GS+ L + N++FD+D L Sbjct: 751 DTYCFNEPKRHMGVFNGVITGQCNEIVEYTSKEETAVCVIGSVVLKNYVKNDKFDFDDLR 810 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 ++ + LD ID+ + I++A+ SN R IG+G+ G Q L Y SPEA ++ Sbjct: 811 KNVKILAKNLDRSIDVMAYPIKEAETSNKLRRPIGVGVQGLQDVFFKLRFSYDSPEARDL 870 Query: 683 ADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 E E I + A+ ASVELA+ G Y +F+GS +G+ + + S Sbjct: 871 NREIFEHIYYAAVEASVELAEIHGPYPTFEGSPASKGILQYHLWDVTPK----------S 920 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 L W L++RVK G+RNS A+ PTA+ A ICG ++ +P NLY + ++G+F V+ Sbjct: 921 NLDWRGLEERVKK-GIRNSLVTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVI 979 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 NS+LV EL +R W+E M + + + GSI + I +K ++ TA+++ +I+ AS Sbjct: 980 NSYLVRELIERGTWNEQMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMASD 1039 Query: 863 RQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGV 919 R ++DQ QS+NL+L +P+ K + + W GLKT YYLRS+ A+S T+ Sbjct: 1040 RGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPASSAIAVTIDND 1097 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 143/463 (30%), Positives = 235/463 (50%), Gaps = 43/463 (9%) Query: 139 APIAPKLKIMMDDGTLISFNSKRLEMIVEEAC---------------SGLQDVSSKIVLS 183 P+ + ++ DG+ + + ++ ++ C +GL V +++ Sbjct: 4 RPMNRLMVVLKRDGSKENISFDKILQRIQRLCWPINSKPVYKGSRAMTGLS-VDVSKIVA 62 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ++ DG+S L+ S ++ + P+Y + AR + L+++ + Sbjct: 63 SVCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDA---- 118 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 + E+ L F IE+ + + Y+RD+ F+Y G + + Sbjct: 119 -YAEIAHLLSNDFKENIEKH--------------ADEYQSFIDYDRDYDFDYFGFKTMER 163 Query: 304 RYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 Y +N +E PQ ++RVA+GL + + E Y+ LS F ++PTLFN+G Sbjct: 164 LYLTKVNNKIVERPQHVYLRVAIGLWGSDIARV---KETYDALSCRKFTHASPTLFNAGF 220 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + QL+SCFL TV D L I+ L + A L+K+ GGLG + + +RG G+ I+GTNG+S G Sbjct: 221 KKAQLASCFLVTVEDSLGDIYKVLGDCAQLSKHGGGLGINISEIRGRGSRINGTNGESDG 280 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 ++P LKV + T+ NQGG+RKG+ YLE H DV +FL +++N G++ R ++ A Sbjct: 281 IVPMLKVFDTTSAYANQGGRRKGSFAIYLEPHHSDVMDFLLMKRNQGEESLRARNLFYAV 340 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W+ DLFMKRV +A W+LF P E L D +G E+ YE YE E K + A Sbjct: 341 WLNDLFMKRVETDAQWSLFDPSECPGLTDAFGDEYAELYERYEA-----EGKAKNVVKAR 395 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +W M+T + ETG P+++ KD N ++ Q + G + SNLC Sbjct: 396 DVWNTMVTTIIETGQPYVSNKDAVNKKNMQMNAGTIRGSNLCV 438 >gi|256820789|ref|YP_003142068.1| ribonucleotide-diphosphate reductase subunit alpha [Capnocytophaga ochracea DSM 7271] gi|315223932|ref|ZP_07865777.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] gi|256582372|gb|ACU93507.1| ribonucleoside-diphosphate reductase, alpha chain [Capnocytophaga ochracea DSM 7271] gi|314946104|gb|EFS98108.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] Length = 551 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 171/638 (26%), Positives = 260/638 (40%), Gaps = 113/638 (17%) Query: 285 LKYERD-FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + E+D + QIL Y L G +E A K F Sbjct: 1 MNEEKDIWWLNEESEQILNRGYLLK--GESVEGAIDRITSAAAHRLYKPEL----QPAFK 54 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 +++ S+P N GT SCF VPD + GI L E M K GG Sbjct: 55 EMITKGWISFSSPIWANMGTERGLPISCFNVHVPDSIEGITHKLGEVIMQTKIGGGTSGY 114 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D EEFL Sbjct: 115 FGELRSRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDAEEFL 173 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 ++ D ++ +PD +M+ + Sbjct: 174 QIK----DVEFPIQNLFFGICVPDYWMQEMIDGD-------------------------- 203 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVH 580 + LW ++L + G P+I F D N PQ + ++ Sbjct: 204 ----------------VEKRRLWARVLESRQQKGLPYIIFTDNANRNRPQVYKDKDMLIR 247 Query: 581 SSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 SSNLC+EI L SS +E+ +C L S+NL FD K ++ AV LD V+ Sbjct: 248 SSNLCSEIMLPSSEDESFICCLSSMNLE------LFDEWKDTKAVKLAVFFLDAVLSEFI 301 Query: 641 HTIEKAK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + HRA+GLG++G+ S L IP+ S EA + + +I A Sbjct: 302 EKTKGNYYLQAARNFAIRHRALGLGVLGYHSYLQRNMIPFESFEATQFNARAFRYIREEA 361 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 A+ ELA G KG Sbjct: 362 DKATKELAHIYGEPEILKG----------------------------------------- 380 Query: 755 TIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G RN+ MAIAPT + + I G VS I+P N Y G+F N +L L+++ Sbjct: 381 -YGRRNTTTMAIAPTTSSSAILGQVSPGIEPYSSNYYKVGLSKGNFMRKNKYLTQLLEEK 439 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 L +E + ++ ++GS+ +++ + K + T EI PM +I A++RQ +IDQ QSL Sbjct: 440 GLNNEEVWRSIRLNNGSVQHLQELSQLEKNVFKTFKEISPMEIISQAAQRQAYIDQTQSL 499 Query: 874 NLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 NL + + ++ + +AW +G+K+ YY RS+S Sbjct: 500 NLNIPSAMPIRDVNKVLIEAWKLGVKSLYYQRSQSVAK 537 >gi|237729634|ref|ZP_04560115.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] gi|226908240|gb|EEH94158.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter sp. 30_2] Length = 714 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 177/708 (25%), Positives = 301/708 (42%), Gaps = 64/708 (9%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K + V + + E +++G + ++ Sbjct: 29 AGRIQFDKDHQAVEAFFAAHVRPNSVAFASQ--QERLETLVDKGYYDASVLARYDRAFVL 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337 L + +LG Y Y L +G R E + VA+ LA + E Sbjct: 87 KLFDHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVTMVALTLAQGD---ET 143 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 144 LAMQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKR 203 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 204 GGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHH 263 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLD ++ D++ R ++ IPD+ K +NA LFSP D+ +YGK Sbjct: 264 PDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAKENADMALFSP---YDVERIYGK 320 Query: 517 EF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 F +IA + E + I+A ++++ + FE+G+P+I F+D N +P Sbjct: 321 PFGDIAVSERYDELLADERVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNSANPI-- 378 Query: 576 VGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTA 628 G ++ SNLC+EI +S+ + S NL + + D T+ TA Sbjct: 379 AGRINMSNLCSEILQVNSASTYDENLNYAQTGHDISCNLGSLNIAHTMDSPDFGRTVETA 438 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 VR L V D+ + ++ + N AIGLG M L I Y SPE ++ + Sbjct: 439 VRGLTAVSDMSHIRSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYF 498 Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---M 738 I++HA++ S+++A+ER ++ FK S + G + D +VR A + Sbjct: 499 YTITWHALNTSMKIARERGQTFAGFKQSRYASGEYFNQYLQGDWQPKTDKVRALFAASGI 558 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSG 797 +R W +L++ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 559 TLPTREMWSQLREDVMHYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKTG 618 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F+ N + ++ A+EI P +I Sbjct: 619 RVYYPAPFMTN-------------------------------ENLALYQDAYEIGPQKII 647 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ + + +DQ SL L+ + + + ++ AW G+K+ YY+R Sbjct: 648 DTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 695 >gi|325291516|ref|YP_004277380.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium sp. H13-3] gi|325059369|gb|ADY63060.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium sp. H13-3] Length = 729 Score = 321 bits (822), Expect = 4e-85, Method: Composition-based stats. Identities = 190/766 (24%), Positives = 317/766 (41%), Gaps = 98/766 (12%) Query: 173 LQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKL 228 L++ +K ++ K++ G L+ + + L ++ + ++ AR + Sbjct: 9 LRNTDAKQQVTAAQKHLDAG-----LDYHALNAMLNLYDENGKIQLDKDRLAARQYFLQH 63 Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 + + +K + + Y + +L + +F Y Sbjct: 64 VNQNTVFFHNLREKLDYLVTEGYY------------EQEVLDQYSFNFVRDLYDEA--YA 109 Query: 289 RDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 R F F +LG Y Y L +G R E + RV M E+ A + + Sbjct: 110 RKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALALARGDEQLARDLMDE 166 Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + S F +TPT N+G + +L SCFL V D++ I ++ L+K GG+ Sbjct: 167 IISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSL 226 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD Sbjct: 227 TNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLD 286 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AY 522 ++ D++ R ++ IPD+ + N LFSP D+ +YG F Sbjct: 287 TKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSP---YDVERVYGVPFTEISVS 343 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E Y+ I+ +KI A ++ + + FE+G+P+I F+D N +P G + S Sbjct: 344 EKYQEMVADSRIRK-KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRANPI--AGRISMS 400 Query: 583 NLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI S + CNLGS+N+ + D TI T++R Sbjct: 401 NLCSEILQVSEASEFNDDLSYSHMGKDISCNLGSLNIASA-----MDSADFGKTIETSIR 455 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D+ + ++ +K N AIGLG M L I Y S E ++ + Sbjct: 456 ALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYT 515 Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELAMNRTS- 742 +++HAI AS LA ER ++ F+ S + G + + + +VRD S Sbjct: 516 VTYHAIRASNRLATERGQSFKGFENSKYASGDYFDKYTDREWLPATEKVRDLFEKAGISI 575 Query: 743 --RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799 + W LK+ V G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 576 PTQEDWKALKQAVMETGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRV 635 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 S+L N+ + + A+EI P +I++ Sbjct: 636 YYPASYLSND-------------------------------NLEYYQDAYEIGPEKIIDT 664 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 665 YAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 710 >gi|300776392|ref|ZP_07086250.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] gi|300501902|gb|EFK33042.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] Length = 552 Score = 321 bits (822), Expect = 4e-85, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 258/633 (40%), Gaps = 120/633 (18%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348 Q+L Y L E R+ A L E + F +++ Sbjct: 11 LNEESEQMLNRGYLLKG-----ETVDGAIDRITTAAAKRLYKPELQP-----AFKEMITK 60 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 S+P N GT+ SCF +PD + GI + E M K GG + +R Sbjct: 61 GWISFSSPVWANMGTQRGLPISCFNVHIPDSIEGITHKMGEVIMQTKIGGGTSGYFGELR 120 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G + NGKS G + F+K+ + V+QGG R+GA AYL+ H D+EEFL ++ Sbjct: 121 NRGTAVTD-NGKSSGAVSFMKLFDTAMDVVSQGGVRRGAFAAYLDIDHGDIEEFLSIK-- 177 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D ++ T +PD +M+ + Sbjct: 178 --DIGSPIQNLFTGVCVPDYWMQDMIDGD------------------------------- 204 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585 + +W ++L + G P+I F D N PQ + V++SNLC Sbjct: 205 -----------MEKRKVWARVLESRQQKGLPYIFFTDNVNRNKPQVYKDLGMTVNASNLC 253 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 +EI L S+ EE+ +C L S+NL +D K ++ A+ LD V+ E Sbjct: 254 SEIMLPSTMEESFICCLSSMNLE------LYDEWKDTDAVKLAIYFLDAVLSEFIDKTEG 307 Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 HRA+GLG++G+ S L IP+ S EA + + I A AS Sbjct: 308 NYYLQGARNFAMRHRALGLGVLGYHSYLQKNMIPFESFEATQFNARAFRHIKEQAEQASR 367 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA G KG G+R Sbjct: 368 ELANIYGEPEVLKG------------------------------------------YGLR 385 Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 N+ MAIAPT + + I G S I+P N Y G+F N +L L+++ L +E Sbjct: 386 NTTTMAIAPTTSSSAILGQTSPGIEPFASNYYKAGLAKGNFMRKNKYLAKLLEEKGLDNE 445 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + GS+ ++ + + K + T EI PM +I A++RQ++IDQAQSLNL + Sbjct: 446 ETWRTIMLNHGSVQHLNELTPEEKAVFKTFKEISPMEIISQAAQRQQYIDQAQSLNLQIP 505 Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 K ++++Y +AW G+KT YY RS S + Sbjct: 506 STMPVKDVNYLYIEAWKKGVKTLYYQRSSSVSK 538 >gi|326335595|ref|ZP_08201782.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692361|gb|EGD34313.1| ribonucleotide-diphosphate reductase alpha subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 551 Score = 321 bits (822), Expect = 4e-85, Method: Composition-based stats. Identities = 167/633 (26%), Positives = 260/633 (41%), Gaps = 120/633 (18%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV----AMGLALKETEKEKRAVEFYNLLSS 348 QIL Y L E + R+ A L E + F +++ Sbjct: 10 LNEESEQILNRGYLLKG-----ESVEGAIDRITYAAAKRLFKPELQP-----AFKEMITK 59 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 S+P N GT SCF +PD + GI L E M K GG + +R Sbjct: 60 GWISFSSPIWANMGTERGLPISCFNVHIPDSIEGITHKLGEVIMQTKIGGGTSGYFGELR 119 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G+ + NGKS G + F+K+ + V+QGG R+GA AYL+ H D+EEFL ++ Sbjct: 120 HRGSAVTD-NGKSSGAVSFMKLFDSAMDVVSQGGVRRGAFAAYLDIDHPDIEEFLQIK-- 176 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D ++ +PD +++ + Sbjct: 177 --DTGYHIQNLFFGVCVPDYWIQEMIDGD------------------------------- 203 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLC 585 + LW ++L + G P+I F D N + PQ + +HSSNLC Sbjct: 204 -----------VDKRKLWARVLESRQQKGLPYIFFTDNVNRKRPQVYKDNNMFIHSSNLC 252 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 +EI L SS+EE+ +C L S+NL FD K ++ A+ LD V+ + Sbjct: 253 SEIMLPSSAEESFICCLSSMNLE------LFDEWKDTKAVKLAIFFLDAVLSEFIEKTKD 306 Query: 646 AK------KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 HRA+GLG++G+ S L IP+ S EA + + I A A+ Sbjct: 307 NYYLQSARNFAIRHRAVGLGVLGYHSYLQKNMIPFESFEATQFNARAFMHIQNEAEKATQ 366 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA G KG G R Sbjct: 367 ELAHIYGEPELLKG------------------------------------------YGRR 384 Query: 760 NSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 N+ MA+APT + + I G VS I+P N Y G+F N +L L+++ + +E Sbjct: 385 NATTMAVAPTTSSSAILGQVSPGIEPFSSNYYKVGLSKGNFMRKNRYLTQLLEEKGINNE 444 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + ++ DGS+ ++ + K + T EI PM ++ A++RQ++IDQ+QSLNL + Sbjct: 445 DVWRSIRLSDGSVQHLSELTTHEKNVFKTFKEISPMEIVTQAAQRQQYIDQSQSLNLNIP 504 Query: 879 EP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + ++ + +AW +G+K+ YY RS+S Sbjct: 505 PTMPVRDVNKVILEAWKLGVKSLYYQRSQSVAK 537 >gi|320533558|ref|ZP_08034211.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134228|gb|EFW26523.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 718 Score = 321 bits (821), Expect = 5e-85, Method: Composition-based stats. Identities = 181/750 (24%), Positives = 304/750 (40%), Gaps = 87/750 (11%) Query: 191 DGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + +S DL+ + + L + + + + AR + + + +K + Sbjct: 11 ETVSSPDLDYHALNAKLNLYDADGRIQFDADREAARQYFLQHVNQNTVFFHDLEEKLEY- 69 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF 306 +EEG + + + + +LG Y Y Sbjct: 70 ------------LVEEGYYEGHILDKYSPEFVKTAFKAAYAHKFRFETFLGAFKYYTSYT 117 Query: 307 LH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 L +G R E + VA+ LA E+ ++ + + S F +TPT N G Sbjct: 118 LKTFDGKRYLERFEDRVTMVALTLA---DGDEQLTLDLVDEMMSGRFQPATPTFLNEGKA 174 Query: 365 HP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + SCFL + D++ I + L+K GG+ + +R +GA I +S G Sbjct: 175 QRGEPVSCFLVRIEDNMESIARGINSALQLSKRGGGVALLLSNLREMGAPIKRIENQSSG 234 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 VIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 235 VIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKIS 541 IPD+ + N LFSP D+ +YG F E Y D G IK +KI+ Sbjct: 295 VIPDITFELARNNEDMYLFSP---YDVERVYGMPFADINVTEKYREMVDDGRIKK-KKIN 350 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLN 591 A ++ + + FE+G+P++ F+D N +P + V + E Sbjct: 351 ARTFFQTLAEIQFESGYPYVMFEDTVNRANPIKGKVVMSNLCSEILQVSEPSELNEDLTF 410 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSN 650 + + CNLGS+N+ D A TIRTAVR L V D + ++ + N Sbjct: 411 AHVGKDISCNLGSLNIAKT-----MDSPDFARTIRTAVRGLTAVSDQTHLPSVPSIDRGN 465 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709 H AIGLG M L I Y S E ++ + + F A++AS E+A ER ++ Sbjct: 466 HESHAIGLGQMNLHGFLARERIHYGSEEGLDFTNVYFASVLFAALTASNEMAVERGESFV 525 Query: 710 SFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 F+ S + G F + + E+ +++ +R W EL ++VK G+ N Sbjct: 526 GFEDSTYASGEFFEKYVTQDFVPVTERVKEIFAASSVHVPTREDWAELAEKVKKGGLYNR 585 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820 N A+ PT +I+ I + SI P + ++ G F+ N+ Sbjct: 586 NLQAVPPTGSISYINNSTSSIHPIVAKVEIRKEGKIGRVYYPAPFMTND----------- 634 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + A+EI P +I++ + + +DQ SL L+ + Sbjct: 635 --------------------NLDYYRDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDT 674 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + + ++ AW G+KT YY+R R A Sbjct: 675 ATTRDVNRAQIYAWRKGIKTLYYIRLRQAA 704 >gi|257092627|ref|YP_003166268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045151|gb|ACV34339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 969 Score = 320 bits (820), Expect = 6e-85, Method: Composition-based stats. Identities = 141/628 (22%), Positives = 244/628 (38%), Gaps = 73/628 (11%) Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD-------LYGI 383 E ++ + F F+ + +GT L +CF+ + D GI Sbjct: 61 EKQRGQWEARFL-WAQENGFVPAGRINSAAGTTLAATLINCFVQPIGDSVVEIVDGKPGI 119 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + AL E A + GG+G D++ +R +GA + GT ++ G + +++V + + V G Sbjct: 120 YSALAEAAETMRRGGGVGYDFSAIRPMGAIVKGTQSRASGPVSYMRVFDRSCETVESAGS 179 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA L H D+E F+ + D + N + + D FM+ V + Sbjct: 180 RRGAQMGVLRCDHPDIEVFIHAK-----DHGDLTNFNVSIAVTDAFMEAVEAD------- 227 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 EV H ++R I V+R++ A LW +++ ++ P I F Sbjct: 228 -AEVELTHRAEPNADMKRASAFQRD---DGIWVYRRVRARDLWDQVMKSTYDHAEPGILF 283 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDY 618 D N + + V+ ++N C E L C LGSINL + FD+ Sbjct: 284 LDRMNKDNNLYYCEVIEATNPCAEQPLPPY----GCCCLGSINLTLFVKDAFSARAEFDF 339 Query: 619 DKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 I+ + R+LDNV+D+ +++ ++ R +GLG G L +L + Y PE Sbjct: 340 AAFGEVIKVSTRMLDNVLDVTAWPLDRQREEAANKRRVGLGFTGLGDTLCMLCLRYDRPE 399 Query: 679 AVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM 738 A + EF+ A ASV+LA+ERGA+ F L+ G Sbjct: 400 ATAMGARISEFMRDTAYLASVDLAKERGAFPLFNAELYLSGGNF---------------- 443 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMS 796 + E+K ++ G+RNS+ ++IAPT TI+ S I+P + Y + Sbjct: 444 ---ASRLPTEIKAEIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPFSWTYSRKKRM 500 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 D T+ + V + K+ G + + L TA EI Sbjct: 501 ADGTLK-EYAVEDYA---------WRLYKHQGGDV-------EKLPDYFVTALEISAKAH 543 Query: 857 IESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 + + +ID + S + + + + +Y AW GLK R + S Sbjct: 544 KDMVAAVAPYIDTSISKTVNVPADYPYEDFQDLYLSAWKAGLKGLATYRPNAVLGSVLSV 603 Query: 916 LKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 + + + + + Sbjct: 604 GSPSGSQSVSQKQAEDRKQPQDFELGDA 631 >gi|268315916|ref|YP_003289635.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodothermus marinus DSM 4252] gi|262333450|gb|ACY47247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodothermus marinus DSM 4252] Length = 620 Score = 320 bits (820), Expect = 7e-85, Method: Composition-based stats. Identities = 146/597 (24%), Positives = 249/597 (41%), Gaps = 56/597 (9%) Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV-PDDLYGIFGALQ 388 E+E+ + A FY +L F F+ L +GTRH L +CF+ + D L GIF +L+ Sbjct: 55 PESERARWAERFYQVLYGFKFLPGGRILAGAGTRHRVTLFNCFVMGIIEDSLDGIFDSLK 114 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 E A+ + GG+G D++ +R G T + G + F+ + + + G R+GA+ Sbjct: 115 EGALTMQQGGGVGYDFSTLRPAGTRARTTGTIASGPVSFMHIWDAMCATLLSTGARRGAM 174 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 A L H D+E F+ + G N + + D FM+ V ++A W L P Sbjct: 175 MATLRCDHPDIETFVTAKHRPG----VLTHFNLSVQVFDEFMEAVRRDADWPLVFPAAAL 230 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 + + I Y + +V R + A ALW ++L ++ P + F D N Sbjct: 231 EDEGMGDGP--IVYRRWTGTDGPVPCRVLRVVKARALWEQILRATYDYAEPGVLFIDTIN 288 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF-----DYDKLAS 623 + + + ++N C E L C+LGSINL D++ + Sbjct: 289 RMNNLAYREHITATNPCGEQPLPPY----GACDLGSINLTRFVRAPFTPEADLDWEGIRE 344 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 T+ AVR+LDNVID++ + + R IGLG+ G AL +L + YAS EA ++A Sbjct: 345 TVAVAVRMLDNVIDVSGFPLPAQAEQARGTRRIGLGITGLADALIMLGLHYASEEARQLA 404 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 M+ I A S+ LA+E+G + F+ + + + Sbjct: 405 ARVMQTICHTAYRTSIALAREKGVFPFFERERY--------------------LESPFIQ 444 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVV 802 ++++K + T G+RNS+ ++IAPT TI+ + S I+P + Y + + D Sbjct: 445 ALPEDIRKGIATYGIRNSHLLSIAPTGTISLLANNVSSGIEPVFAYRYTRYILGLDGERR 504 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L + LW + + L + A +DP ++ + Sbjct: 505 AYTLTD--YALRLW---------------QRLHGDSEMLPEAFVDAQHLDPYDHLKMQAA 547 Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 Q ++D A S + + + +Y A+ GLK R + Sbjct: 548 LQPYVDGAISKTVNVPADTPFNAFRQLYDWAYDHGLKGCTTYRPSPVRGAVLEAITA 604 >gi|291006953|ref|ZP_06564926.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora erythraea NRRL 2338] Length = 943 Score = 320 bits (820), Expect = 7e-85, Method: Composition-based stats. Identities = 131/653 (20%), Positives = 234/653 (35%), Gaps = 66/653 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382 V G E + E E +L F ++P FN GT Q+S+CF+ +V D + Sbjct: 109 VEHGYFATEADAEIFEHELTWMLMHQVFSFNSPVWFNVGTSSRQQVSACFILSVDDTMES 168 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I +E ++ K G G + + +R + G + G + F++ A+ +A + G Sbjct: 169 ILNWYKEEGLIFKGGSGAGLNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGG 227 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTA 482 R+ A L+ H D+EEF++ + R + + N + Sbjct: 228 ATRRAAKMVVLDVDHPDIEEFIETKAKEEHKIRALRDAGFDMDLGGADSASVQYQNANNS 287 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + + L S R + V + A Sbjct: 288 VRVSDEFMRAVESDGKFGLRS---------------------------RTDGSVIESVGA 320 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 L+RK+ +E P I + D N G + +SN C+E + + CNL Sbjct: 321 RELFRKVAKAAWECADPGIQYDDTINDWHTSPETGRISASNPCSEYMH----LDNSSCNL 376 Query: 603 GSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 S+NL+ + FD + T+ + +D I E + R +G+G Sbjct: 377 ASLNLMKFLREDLTFDAELFEKTVEFVITAMDISISFADFPTEAIGDTTRKFRQLGIGYA 436 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L Y S +A ++ A S ELA G Y + + Sbjct: 437 NLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKRSAELAGAVGPYEGYARNADAHQRV 496 Query: 722 PIDSIGLLA----EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 ++++A+++ + W E + G RN+ +APT TI + Sbjct: 497 MRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIGARDGWRNAQASVLAPTGTIGLMMD 556 Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833 + I+P + + K G +VN + LK E + + ++Y G + + Sbjct: 557 CDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKALGYQQEQIEAVVEYIAEHGHVVD 616 Query: 834 IERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + ++ A I PM + + Q ++ A S + + E S ++ IY Sbjct: 617 APGLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPFLSGAISKTVNMPESASVADVEEIY 676 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + W +GLK R S KG G+ +P Sbjct: 677 FEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGESEKAVEKQIEYRPVRKRLPK 729 >gi|134098345|ref|YP_001104006.1| vitamin B12-dependent ribonucleotide reductase [Saccharopolyspora erythraea NRRL 2338] gi|133910968|emb|CAM01081.1| ribonucleoside diphosphate reductase,B12-dependent [Saccharopolyspora erythraea NRRL 2338] Length = 922 Score = 320 bits (820), Expect = 7e-85, Method: Composition-based stats. Identities = 131/653 (20%), Positives = 234/653 (35%), Gaps = 66/653 (10%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382 V G E + E E +L F ++P FN GT Q+S+CF+ +V D + Sbjct: 88 VEHGYFATEADAEIFEHELTWMLMHQVFSFNSPVWFNVGTSSRQQVSACFILSVDDTMES 147 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I +E ++ K G G + + +R + G + G + F++ A+ +A + G Sbjct: 148 ILNWYKEEGLIFKGGSGAGLNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGG 206 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTA 482 R+ A L+ H D+EEF++ + R + + N + Sbjct: 207 ATRRAAKMVVLDVDHPDIEEFIETKAKEEHKIRALRDAGFDMDLGGADSASVQYQNANNS 266 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + + L S R + V + A Sbjct: 267 VRVSDEFMRAVESDGKFGLRS---------------------------RTDGSVIESVGA 299 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 L+RK+ +E P I + D N G + +SN C+E + + CNL Sbjct: 300 RELFRKVAKAAWECADPGIQYDDTINDWHTSPETGRISASNPCSEYMH----LDNSSCNL 355 Query: 603 GSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 S+NL+ + FD + T+ + +D I E + R +G+G Sbjct: 356 ASLNLMKFLREDLTFDAELFEKTVEFVITAMDISISFADFPTEAIGDTTRKFRQLGIGYA 415 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L Y S +A ++ A S ELA G Y + + Sbjct: 416 NLGALLMATGHAYDSDGGRALAAAITSLMTGTAYKRSAELAGAVGPYEGYARNADAHQRV 475 Query: 722 PIDSIGLLA----EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 ++++A+++ + W E + G RN+ +APT TI + Sbjct: 476 MRKHAAANDLVRTYHKNDVAVHKLATKVWQEGLEIGARDGWRNAQASVLAPTGTIGLMMD 535 Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833 + I+P + + K G +VN + LK E + + ++Y G + + Sbjct: 536 CDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKALGYQQEQIEAVVEYIAEHGHVVD 595 Query: 834 IERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + ++ A I PM + + Q ++ A S + + E S ++ IY Sbjct: 596 APGLRPEHYEVFDCAMGQRSIAPMGHVRMMAAVQPFLSGAISKTVNMPESASVADVEEIY 655 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 + W +GLK R S KG G+ +P Sbjct: 656 FEGWKLGLKALAIYRDNCKVGQPLSAGKGDKGESEKAVEKQIEYRPVRKRLPK 708 >gi|227504015|ref|ZP_03934064.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199409|gb|EEI79457.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 720 Score = 320 bits (820), Expect = 7e-85, Method: Composition-based stats. Identities = 174/734 (23%), Positives = 291/734 (39%), Gaps = 72/734 (9%) Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH-----EMQCLYPEYFCR 258 + ++ E LL K + A +Y Sbjct: 7 KTVAEPVKPEEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDLEE 66 Query: 259 YIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSR 313 + V+ + + +D ++ + K + F + Y Y +G R Sbjct: 67 KMRYLVENKYYEPELLEQYDFDFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLKTFDGRR 126 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + RV+M A + + + F +TPT N+G +L SC Sbjct: 127 YLERFED---RVSMTALFLADGDTTVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSC 183 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 184 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLL 243 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 244 EDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVIPDITFE 303 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 +N LFSP D+ +YGK F E+YE + I+ +KI+A ++ + Sbjct: 304 LAKKNDDMYLFSP---YDVERVYGKAFADISITEHYEEMVEDPRIRK-KKINARHFFQTV 359 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602 + FE+G+P+I F+D N ++ G ++ SNLC+EI +S A Sbjct: 360 AELQFESGYPYIMFEDTVN-KANPVKTGWINMSNLCSEILQVNSPSVFADDLSYETMGSD 418 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661 S NL + D T+ TA+R L V D +++ +K N AIGLG M Sbjct: 419 ISCNLGSLNIAMTMDSPDFGLTVETAIRGLTAVADKTAINSVPSVRKGNDDSHAIGLGQM 478 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGV 720 L HI Y S E ++ + I + A+ AS ++A+ERG Y S F S + G Sbjct: 479 NLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKIARERGEYFSEFPQSEYASGE 538 Query: 721 FPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F + R D +++ + W LK V G+ N N A+ PT +I Sbjct: 539 FFDRYDPEEFKPRTARVQELFDASSIHTPTAEDWAALKADVAKHGLYNRNLQAVPPTGSI 598 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G + N+ Sbjct: 599 SYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------------- 636 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 + ++EI +I++ + K++DQ SL L+ + + + ++ Sbjct: 637 ---------NLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINKAQI 687 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 688 YAWRKGIKTLYYIR 701 >gi|66957898|gb|AAQ73541.2| ribonucleotide reductase large subunit [Tortoise herpesvirus] Length = 796 Score = 320 bits (820), Expect = 8e-85, Method: Composition-based stats. Identities = 170/717 (23%), Positives = 282/717 (39%), Gaps = 76/717 (10%) Query: 252 YPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 Y E + + ++ + L + L Y + + D Y Sbjct: 84 YLEAIDLCDDVREEVTHHMARIVKY-LTNFYSGLAYYKIKTLGLMSAMKYEDFYLTKFQN 142 Query: 312 SRIEMPQAFFMRVAMGLALKETEKE---------------KRAVEFYNLLSSFHFMCSTP 356 E FF R+A +A F+NLLS + TP Sbjct: 143 GTHESIGQFFTRIAATVATHIHRDMPQYGLLIPMMERSWFNYFDYFFNLLSHNIIIPPTP 202 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 + G ++ L+SC+L P + Q+ + + GG+G + Sbjct: 203 AMLFMGRKNRSLASCYLLDPPQKTTLEAMSAVAQDIIPILNHRGGIGINVNDYNQT---- 258 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR- 473 G+ G + K+ + + N +R VC ++E W+ DVE FL ++ T + Sbjct: 259 -PREGRKLGFLGLAKLIDTCVLLSNSDSERPTGVCMFMEPWNADVESFLGIKGLTTLEHH 317 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDE-VSDLHDLYGKEFEIAYENYERQADRG 532 R ++ A WIPDLFMKR + T D+ + L LYGKEFE Y E Sbjct: 318 LRCDNIFNALWIPDLFMKRYMADPNTTWSLFDDRCNHLAKLYGKEFEDEYHRLETAGMA- 376 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLN 591 R++ L K++ TG P+I FKD CN G + SNLCTEI + Sbjct: 377 ----VRQMPIKELLFKIIRSAIMTGSPFIMFKDSCNRHYYMDTQGQAIRGSNLCTEIIHH 432 Query: 592 SSSEETAVCNLGSINLLAHFA---------------------------NNQFDYDKLAST 624 + + VCNL ++NL A + F+++KL Sbjct: 433 TEPDSDGVCNLMNVNLPAFLTLSFNKETYCLSDDTLWQEHNKFCTPGGHRYFNFEKLTEA 492 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + A ++ +ID + H K + R++G+G G + +L +P+A ++ Sbjct: 493 VTAATIFINVMIDRSVHPTTKTQNGAKNFRSMGIGFQGLNTLCWILGETLVTPKARKLGK 552 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 E + A AS EL Q + F S + +G+ D+ + + T + Sbjct: 553 TICEAMYLSAAEASNELCQLGLSPFKRFSESRYARGIMHFDAWDNVGSL--------TFQ 604 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN 803 W L+ ++ G+ NS +A+ PT + + I S++ P + NLY K +++G+ N Sbjct: 605 DRWSALRPKIIKYGLYNSQFIALMPTVSSSQITESSEAFYPVFTNLYSKLSVNGETVKPN 664 Query: 804 SFLVNELKQ--RDLWDEAMISDLKYHDGSI-GNIERIP-DDLKKIHATAFEIDPMWLIES 859 L+ +L + + L+ H + +P D + + TAFE D L+E Sbjct: 665 VMLLRDLGSVFKGKDYTDALEKLERHKWVVGEAFPDLPTDHAIRKYLTAFEYDQNTLLEL 724 Query: 860 ASRRQKWIDQAQSLNLYL----DEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 + R ++D +QS LY S K + A+ +GLKT YY R + AT Sbjct: 725 TADRAPFVDHSQSNTLYFLEGKTPISAKYIMNHLVTAYKLGLKTGMYYCRIKKATDA 781 >gi|218296963|ref|ZP_03497649.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus aquaticus Y51MC23] gi|218242666|gb|EED09202.1| ribonucleoside-diphosphate reductase, alpha chain [Thermus aquaticus Y51MC23] Length = 560 Score = 320 bits (819), Expect = 8e-85, Method: Composition-based stats. Identities = 163/585 (27%), Positives = 246/585 (42%), Gaps = 103/585 (17%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 + +F ++ ++ +TP N G + SC+ T V DD I A+ E M++K Sbjct: 54 FSEKFQRYMARGYYSLATPVWANYGLKRGLPISCYGTYVEDDTASILRAVAEVGMMSKQG 113 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG +R GA I NG+S G F + + NQG R+G AYL+ H Sbjct: 114 GGTSVYLGALRPRGAPIRD-NGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYLDVEHP 172 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EE+ +++ + + IPD +M+ + Sbjct: 173 DLEEWFRIQR----EGSEIQSLFWGVSIPDRWMEEMVAGDRAK----------------- 211 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 W K+L FE G P++ F+D N PQ Sbjct: 212 -------------------------RETWAKILKSRFEAGIPYLFFRDAANRGMPQVFRE 246 Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 + +SNLCTEI L SS EE+ VC L S+NLL +D K + T V LD+ Sbjct: 247 LGLRIWASNLCTEIMLPSSPEESFVCCLSSLNLL------HYDEWKETDAVETLVIFLDS 300 Query: 635 VIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 V+D +E+A + +RAIGLG++G+ S L IP S EA + E + Sbjct: 301 VLDDFIEKAEGIPYLERAVRFARRYRAIGLGVLGWHSYLQSRMIPLESLEAQYLNQEIFK 360 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 I A AS L + R P DE Sbjct: 361 TIRERAEEASRWLRK---------------------------------------RHPEDE 381 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 L + RN+ +AIAPT + + I G VS SI+P N Y+K N FL Sbjct: 382 LSGVGELKERRNATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKAKVPFKNPFLE 441 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 L+Q+ +E + + H+GS+ +++ + D+ K + T EI + L+ A+ RQ+++ Sbjct: 442 ELLRQKGKDEERVWRSILEHNGSVQHLDFLNDEEKAVFKTFAEISQLELVRQAAARQRYV 501 Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 DQ QSLNL + E K ++ +Y +AW GLK+ YY S+S Sbjct: 502 DQGQSLNLVIHPEAPLKDVNELYLEAWRSGLKSLYYQWSQSVAQA 546 >gi|322511018|gb|ADX06331.1| putative ribonucleotide reductase large subunit A [Organic Lake phycodnavirus 2] Length = 831 Score = 320 bits (819), Expect = 9e-85, Method: Composition-based stats. Identities = 154/482 (31%), Positives = 251/482 (52%), Gaps = 29/482 (6%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQ-DVSSKIVLSETYKNMYDGLSESDLETALIF 204 ++ + + ++ ++ ++ ++ + +Y+ + +++ + Sbjct: 3 YVIKRNERKELLSYDKILERTKKLGDKYNLEIQYSGLVLKIIDQLYNNIKTCEIDELMAE 62 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 ++ +Y+K+ + +E T+ + Q + + Y Sbjct: 63 QCASMGSIHYDYSKLAGYICVSNHHKETKHTLLESVQLLSKKYLSTRY------------ 110 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 S+++ L + + YER+F +Y G + L Y + N +E Q +MRV Sbjct: 111 ------YSIVEKHHKELEHMIVYERNFLIDYFGYKTLERSYLMRNNNKVVENIQHLWMRV 164 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LYGI 383 ++ + E + E Y+ LS F+ +TPTL+NSGTR PQLSSC+L + DD + GI Sbjct: 165 SIEIHG---ENLDKVKETYDGLSKKLFIHATPTLYNSGTRRPQLSSCYLLGMEDDSIDGI 221 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG- 442 F L E A ++K++GG+G VR G HI GTNGKS G++P L+V N+TA V+QGG Sbjct: 222 FNTLHECASISKWAGGIGLHIHNVRSKGTHISGTNGKSNGIVPMLRVFNNTARYVDQGGG 281 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 KR G+ YLE WH D+EEFL+LRKN G++ R D+ A W+PDLFM ++ ++ W L Sbjct: 282 KRNGSFAIYLEPWHGDIEEFLELRKNHGEEEMRARDLFYALWVPDLFMNKIEKDDDWYLM 341 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 P++ L +LYG+ FE Y Y E K +K+ A LW K+L ETG P++ Sbjct: 342 CPNQCEGLSELYGESFEALYNQYV-----SEGKYLKKMKARELWFKILDSQMETGTPYML 396 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLA 622 +KD CN +S Q+++G + SSNLC EI S EE+AVCNL SI+L + +++ + Sbjct: 397 YKDACNKKSNQKNLGTIRSSNLCCEIIEYSDKEESAVCNLASISLSSFVKPSKYKFKGNV 456 Query: 623 ST 624 + Sbjct: 457 NV 458 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 172/342 (50%), Gaps = 37/342 (10%) Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 FDY L + L+N+ID+N + EK + SN HR IG+G+ G ++++ Sbjct: 523 PWFDYKGLHKITKIVTENLNNIIDVNYYPTEKTRLSNKKHRPIGIGVQGLADTFAMMNVA 582 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEV 732 + S +A +I + E + ++ S+ELA+E+ Y SF GS QG+F D + Sbjct: 583 FDSNDAKQINKDIFETMYHASMEKSMELAKEKQGPYDSFDGSPLSQGIFQFDLWNVTP-- 640 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 +++ WD+L+ + G NS C+A PTA+ + I ++ +P N+Y + Sbjct: 641 --------SNKYNWDKLRNNIMEFGTYNSLCLAPMPTASTSQILSNNECFEPFTSNMYTR 692 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 ++G+F V+N L+ EL ++W+ ++ +++ H GSI I+ IPD +K+ + +E+ Sbjct: 693 RTLAGEFMVINKHLMKELIDLNIWNSSIKNEIVKHKGSIQTIKEIPDYIKQKYKIVWEMS 752 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSATSV 911 +I+ A R +I Q+QS+NL++++P+ K L ++ AW GLKT YYLR ++ Sbjct: 753 MKSIIDMAKDRGAYICQSQSMNLWVEDPNYKILTNMHLYAWKSGLKTGMYYLRRKAKHQA 812 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 ++ T+ D EC +C Sbjct: 813 QQFTVVPDK-------------------------EDPECLMC 829 >gi|295395247|ref|ZP_06805455.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium mcbrellneri ATCC 49030] gi|294972009|gb|EFG47876.1| ribonucleotide-diphosphate reductase subunit alpha [Brevibacterium mcbrellneri ATCC 49030] Length = 720 Score = 320 bits (819), Expect = 9e-85, Method: Composition-based stats. Identities = 174/735 (23%), Positives = 304/735 (41%), Gaps = 75/735 (10%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTV--YKKPQKATHHEMQCLY 252 E+DL+ + + L ++ R E+ R+ + H++ Sbjct: 17 ETDLDYHALNAMLNLYDEN-------GRIQFERDRQAARQFFLQHVNNNTVFFHDLA--- 66 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +E + + + + L+ ++ +LG Y Y L +G Sbjct: 67 -EKLNYLVEHEYYEKEVLDQYDFEFISELSKFAYSKKFRFQTFLGAFKFYTSYTLKTFDG 125 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + E A + + F +TPT N+G + +L Sbjct: 126 KRYLERFEDRVVMVALFLARGDRE---LARNLVEEIIAGRFQPATPTFLNAGKKQRGELV 182 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 183 SCFLLRIEDNMESIGRSINSALQLSKRGGGVAFSLTNIRESGAPIKKIENQSSGVIPVMK 242 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 243 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 302 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 303 FQLAKKNEDMYLFSP---YDVEQVYGVPFSDISVTEKYDEMVDDARIRKTKIRAREFFQT 359 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCN 601 + + FE+G+P+I ++D N +P G + SNLC+EI N+ V Sbjct: 360 LAEIQFESGYPYIMYEDTVNRANPI--DGKITMSNLCSEILQVSEASEYNADLTYAHVGK 417 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + D D T+ TA+R L V D N ++ ++ N+ AIGLG Sbjct: 418 DISCNLGSLNIAMAMDSDDFGRTVETAIRGLTAVSDTSNISSVPSIERGNNMSHAIGLGQ 477 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y S E ++ + +++HA+ AS+E+A+ERG A+ F+ S + G Sbjct: 478 MNLHGYLARESIHYGSEEGLDFTNMYFYTVAYHAVRASMEIAKERGVAFEGFERSKYASG 537 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + R ++ ++ ++ W L+ V T G+ N N A+ PT + Sbjct: 538 EYFEKYTQQEWVPRTQKVADLFEKAGVHIPTQDDWAALRDDVATYGIYNQNLQAVPPTGS 597 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G F+ N+ Sbjct: 598 ISYINNSTASIHPIASRIEIRKEGKIGRVYYPAPFMTND--------------------- 636 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + A+E+ +I++ + K +DQ SL L+ + + + ++ Sbjct: 637 ----------NLEYYQDAYEVGYEKVIDTYAEATKHVDQGLSLTLFFKDTATTRDVNRAQ 686 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 687 IYAWRKGIKTLYYIR 701 >gi|227833935|ref|YP_002835642.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] gi|227454951|gb|ACP33704.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] Length = 720 Score = 320 bits (819), Expect = 9e-85, Method: Composition-based stats. Identities = 183/734 (24%), Positives = 297/734 (40%), Gaps = 72/734 (9%) Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + ++ E LL K + A +Q + + E Sbjct: 7 KTVAEPVKPEEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDLEE 66 Query: 264 VKARLLHESMMD------FDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSR 313 L+ + +D ++ + K F F + Y Y +G R Sbjct: 67 KMRYLVDNKYYEPELLEQYDFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRR 126 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + RV+M K A + + + F +TPT N+G +L SC Sbjct: 127 YLERFED---RVSMTALFLADGDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSC 183 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 184 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLL 243 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 244 EDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFE 303 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 N LFSP D+ +YGK F E+YE + I+ +KI+A ++ + Sbjct: 304 LAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTV 359 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602 + FE+G+P+I F+D N R+ G ++ SNLC+EI +S E Sbjct: 360 AELQFESGYPYIMFEDTVN-RANPVKTGRINMSNLCSEILQVNSPSELNEDLTYKTLGSD 418 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661 S NL + D A T+ TA+R L V D +++ +K N AIGLG M Sbjct: 419 ISCNLGSLNIAATMDSPDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQM 478 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGV 720 L HI Y S E ++ + I + A+ AS +LA+ERG Y S F S + G Sbjct: 479 NLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGE 538 Query: 721 F-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F P D +V++ A ++ S W +LK V G+ N N A+ PT +I Sbjct: 539 FFDRYDPADFAPRTEKVKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSI 598 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G + N+ Sbjct: 599 SYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------------- 636 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 + ++EI +I++ + K++DQ SL L+ + + + ++ Sbjct: 637 ---------NLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQI 687 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 688 YAWRKGIKTLYYIR 701 >gi|297626482|ref|YP_003688245.1| Vitamin B12-dependent ribonucleotide reductase (ribonucleoside-diphosphate reductase NrdJ) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922247|emb|CBL56819.1| Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 963 Score = 320 bits (819), Expect = 9e-85, Method: Composition-based stats. Identities = 129/631 (20%), Positives = 232/631 (36%), Gaps = 31/631 (4%) Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383 A G + E E +L +F ++P FN GT Q+S+CF+ +V D + I Sbjct: 108 AEGYFASPEDAEVFEQELTWMLVHQYFSFNSPVWFNVGTASPQQVSACFILSVDDSMESI 167 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442 +E M+ K G G + + +R + + G + G + F++ A+ +A + G Sbjct: 168 LNWYKEEGMIFKGGSGAGLNLSRIRSSKELLRSSGGTASGPVSFMRGADASAGTIKSGGA 227 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+ A L+ H D+EEF++ + D R D + + V Sbjct: 228 TRRAAKMVVLDVDHPDIEEFVETKAREEDKIRALRDAGFDMDLGGRDITSVQYQNANNSV 287 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 + G F R +V ++ A LW K+ +E P + Sbjct: 288 RVSDEFMQAVQDGTPF--------GLKARTTGEVIEEVDAKDLWGKIAKAAWECADPGMQ 339 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKL 621 + N G +++SN C+E S + + CNL S+NLL ++ FD + Sbjct: 340 YDGTINSWHTTPESGRINASNPCSEYM----SLDNSSCNLASLNLLKFLRDDDSFDTELF 395 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + +D I E + +R +G+G + L L Y S Sbjct: 396 TKAVELIITAMDISICFADFPTEAIGDTTRDYRQLGIGYANLGALLMALGKGYDSEGGRA 455 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELA 737 +A ++ A S E+A G Y + + L + Sbjct: 456 LAAAITSLMTGTAYRRSAEMAGVVGPYKGYARNAESHQRVIRKHGAANEALDNVAAIDTE 515 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNM 795 + R ++ WD+ + G RN+ +APT TI + + I+P + + + K Sbjct: 516 VRRAAQHEWDKADVMGQANGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVG 575 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAF--- 849 G +VN + L +D + + G++ + + ++ TA Sbjct: 576 GGSMQMVNHTVERALTNLG-YDATTRQSIVDYVAEKGNVVGAPGLREADYEVFDTAMGVR 634 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I PM + + Q ++ A S + L E + +++ +Y Q W +GLK R Sbjct: 635 AIAPMGHVRMMAAVQPFLSGAISKTVNLPESATVEEIADVYMQGWKLGLKALAVYRDNCK 694 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 S+ G GK + TD + Sbjct: 695 VGQPLSS--GNQGKDDNKSTTDQAKPEVRVE 723 >gi|271968371|ref|YP_003342567.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270511546|gb|ACZ89824.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 945 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 137/660 (20%), Positives = 244/660 (36%), Gaps = 38/660 (5%) Query: 297 GLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 L+ L DR + +E G E + E E + L + F ++P Sbjct: 92 SLKQLIDRVVGVYTRTAVE----------HGYFAGEEDAEIFDHELKHALVNQVFSFNSP 141 Query: 357 TLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 FN GT Q+S+CF+ V D + I +E ++ K G G + + +R + Sbjct: 142 VWFNVGTASPQQVSACFILAVDDQMESILDWYKEEGVIFKGGSGSGVNLSRIRSSKELLS 201 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G + G + F++ A+ +A + G R+ A L+ H D+EEF++ + D R Sbjct: 202 S-GGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIETKAREEDKVR 260 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 D + + + + D + + E E R GE Sbjct: 261 ALRDAGFDMDL------GGKDIVSVQYQNANNSVRVSDEFMRAVEKGEEFGLRARLTGE- 313 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 V K+ A L+RKM T +E P + + D N G + +SN C+E Sbjct: 314 -VIEKVDAGRLFRKMATAAWECADPGVQYDDTINDWHTSPETGRITASNPCSEYLH---- 368 Query: 595 EETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + + CNL SINL+ ++ FD + + +D I EK ++ + Sbjct: 369 LDNSSCNLASINLMKFLKDDNSFDIESFVKITELIITAMDVSITFADFPTEKIDQTTRAY 428 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G + L Y S IA ++ + S ELA G Y + Sbjct: 429 RQLGIGYANLGALLMATGHAYDSEGGRAIAGAVTSLMTGASYRRSAELAAVVGPYDGYAR 488 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPT 769 + ++R M++ + W E K + G RN+ +APT Sbjct: 489 NADAHKRVMRKHAAANDDLRTLEGMDKAIHAEASRQWTECLKLGERNGYRNAQASLLAPT 548 Query: 770 ATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY- 826 TI + + I+P + + K G +VN + L+Q +E + + ++Y Sbjct: 549 GTIGLMMDCDTTGIEPDLALVKFKKLVGGGSMQIVNQTIPRALRQLGYPEEQVEAIVEYI 608 Query: 827 -HDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 + + + + + ++ A I PM + + Q ++ A S + L E + Sbjct: 609 ASNSHVVDAPGLKPEHYEVFDCAMGERAIAPMGHVRMMAAAQPFLSGAISKTVNLPEAAT 668 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 + ++ +Y + W +GLK R S K +P + P Sbjct: 669 VEDIEQVYMEGWKLGLKALAVYRDNCKVGQPLSVAGKKSDKKTEEKAAEPEIQVVEISRP 728 >gi|311113721|ref|YP_003984943.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia dentocariosa ATCC 17931] gi|310945215|gb|ADP41509.1| ribonucleotide-diphosphate reductase subunit alpha [Rothia dentocariosa ATCC 17931] Length = 726 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 180/743 (24%), Positives = 298/743 (40%), Gaps = 74/743 (9%) Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 S+ + + G+S +L L L ++ R + + + Sbjct: 18 SKAVPDKFKGMSYHELNALL-----NLYDENGMIQFDADRQAARQYFLQ-----HVNNNT 67 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 H+++ E IE L + + L + +LG Y Sbjct: 68 VFFHDLE----EKIEYLIENQYYEPELFDRYSFDFVKSLFKRAYAAKFRFPTFLGAFKFY 123 Query: 303 DRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y L +G R E + RV M L K A E + + S F +TPT N Sbjct: 124 TSYALKTFDGQRYLERFED---RVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLN 180 Query: 361 SGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G R +L SCFL + D++ I ++ L+K GG+ T +R GA I Sbjct: 181 AGKRQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIEN 240 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R + Sbjct: 241 QSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTL 300 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 + IPD+ + +N LFSP D+ +YG F + + + ++ + Sbjct: 301 SLGVVIPDITFELAKRNEDMYLFSP---YDVERIYGVAFSDINVSEKYYEMVDDSRIRKT 357 Query: 540 -ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I+A ++ + + FE+G+P++ F+D N G + SNLC+EI S Sbjct: 358 KINAREFFQTIAEVQFESGYPYVMFEDTVNR--SNPIEGKIIMSNLCSEILQVSKPSIYH 415 Query: 599 VCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650 S NL + D D L T+ TA+R L V D + ++ ++ N Sbjct: 416 DDLSYAEIGKDISCNLGSLNIAMTMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 475 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYS 709 A+GLG M L H+ Y S E ++ + +++HAI AS+E+A+ERG + Sbjct: 476 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 535 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763 F+ S + G F I E + E + +R W +L V GM N N Sbjct: 536 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 595 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I G + SI P + ++ G F+ N+ Sbjct: 596 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 642 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 + ++EI +I++ + + +DQ SL L+ + + Sbjct: 643 ------------------NLEYFQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIR 707 >gi|262184938|ref|ZP_06044359.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium aurimucosum ATCC 700975] Length = 716 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 183/734 (24%), Positives = 297/734 (40%), Gaps = 72/734 (9%) Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + ++ E LL K + A +Q + + E Sbjct: 3 KTVAEPVKPEEQLDYHALNALLNLYDENGKIQFDKDREAANQFFLQHVNQNTVYFHDLEE 62 Query: 264 VKARLLHESMMD------FDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSR 313 L+ + +D ++ + K F F + Y Y +G R Sbjct: 63 KMRYLVDNKYYEPELLEQYDFDFIKSLFKRAYAFKFRFKTFLGAYKYYTSYTLKTFDGRR 122 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + RV+M K A + + + F +TPT N+G +L SC Sbjct: 123 YLERFED---RVSMTALFLADGDTKVAEHLVDEIMTGRFQPATPTFLNAGKAQRGELVSC 179 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLL 239 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 240 EDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGIVIPDITFE 299 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 N LFSP D+ +YGK F E+YE + I+ +KI+A ++ + Sbjct: 300 LAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINARHFFQTV 355 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602 + FE+G+P+I F+D N R+ G ++ SNLC+EI +S E Sbjct: 356 AELQFESGYPYIMFEDTVN-RANPVKTGRINMSNLCSEILQVNSPSELNEDLTYKTLGSD 414 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661 S NL + D A T+ TA+R L V D +++ +K N AIGLG M Sbjct: 415 ISCNLGSLNIAATMDSPDFALTVETAIRGLTAVSDKTAINSVPSVRKGNDDSHAIGLGQM 474 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGV 720 L HI Y S E ++ + I + A+ AS +LA+ERG Y S F S + G Sbjct: 475 NLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKLARERGEYFSEFPESDYASGE 534 Query: 721 F-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F P D +V++ A ++ S W +LK V G+ N N A+ PT +I Sbjct: 535 FFDRYDPADFAPRTEKVKELFAKSSIHTPSAEEWAQLKVDVAKHGIYNRNLQAVPPTGSI 594 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G + N+ Sbjct: 595 SYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------------- 632 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 + ++EI +I++ + K++DQ SL L+ + + + ++ Sbjct: 633 ---------NLEYFKDSYEIGYEKIIDTYAEATKYVDQGLSLTLFFKDTATTRDINRAQI 683 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 684 YAWRKGIKTLYYIR 697 >gi|71906603|ref|YP_284190.1| ribonucleotide reductase large subunit [Dechloromonas aromatica RCB] gi|71846224|gb|AAZ45720.1| Ribonucleotide reductase large subunit [Dechloromonas aromatica RCB] Length = 964 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 151/614 (24%), Positives = 242/614 (39%), Gaps = 73/614 (11%) Query: 323 RVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDL 380 RVA LA E + F+ + +GT L +CF+ V D + Sbjct: 50 RVAYALAQVEQEADRAHWENKFLWAQENGFIPAGRINSAAGTDLQATLINCFVQPVGDSI 109 Query: 381 -------YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 GI+ AL + A + GG+G D++ +R GA + GT ++ G + +++V + Sbjct: 110 VENTEGKPGIYTALAQAAETMRRGGGVGYDFSSIRPQGARVKGTQSRASGPVSYMRVFDR 169 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + V G R+GA L H D+EEF+ + D+ + N + + D FM+ V Sbjct: 170 SCETVESAGARRGAQMGVLRCDHPDIEEFIHAK-----DKGDLTNFNISIGVTDPFMEAV 224 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + L E + G I V+RK+ A LW +++ Sbjct: 225 DADGDVELLHRAEPNADMRAAGAYQRE-----------DGIWVYRKVRARDLWDQVMKST 273 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-----L 608 ++ P I F D N + + V+ ++N C E L C LGSINL Sbjct: 274 YDHAEPGILFLDRMNKDNNLNYCEVIEATNPCAEQPLPPY----GCCCLGSINLTLYVKD 329 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 A +FD+D A IR + R+LDNV+D +E+ ++ R +GLG G AL Sbjct: 330 AFSEQAEFDFDAFAEVIRISTRMLDNVLDATHWPLERQQQEAANKRRVGLGYTGLGDALA 389 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 +L + Y PEA +A EF+ A SVE+A+ERGA+ F L+ G Sbjct: 390 MLRLRYDKPEARAMAARISEFMRDTAYMYSVEMAKERGAFPLFNAELYLSGGNF------ 443 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSY 786 + ++K ++ G+RNS+ ++IAPT TI+ S I+P + Sbjct: 444 -------------ASRLPTDVKAEIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPF 490 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 Y + D T+ + V + K+ G + + Sbjct: 491 SWTYNRKKRMQDGTIK-EYSVEDYA---------WRLYKHRGGDVSKLP-------DFFV 533 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 TA EI + + +ID + S + + + +Y AW GLK R Sbjct: 534 TALEISAQAHSDMVAAVAPFIDTSISKTVNVPADYPYTDFQDLYMSAWKSGLKGLATYRP 593 Query: 906 RSATSVEKSTLKGV 919 S S Sbjct: 594 NSVLGSVLSVTSSE 607 >gi|300741627|ref|ZP_07071648.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia dentocariosa M567] gi|300380812|gb|EFJ77374.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia dentocariosa M567] Length = 722 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 179/743 (24%), Positives = 298/743 (40%), Gaps = 74/743 (9%) Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQK 242 S+ + + G+S +L L L ++ R + + + Sbjct: 14 SKAVPDKFKGMSYHELNALL-----NLYDENGMIQFDADRQAARQYFLQ-----HVNNNT 63 Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILY 302 H+++ E IE L + + L + +LG Y Sbjct: 64 VFFHDLE----EKIEYLIENQYYEPELFDRYSFDFVKSLFKRAYAAKFRFPTFLGAFKFY 119 Query: 303 DRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 Y L +G R E + RV M L K A E + + S F +TPT N Sbjct: 120 TSYALKTFDGQRYLERFED---RVCMVALLLAEGNGKLAEEIVDEIISGRFQPATPTFLN 176 Query: 361 SGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 +G + +L SCFL + D++ I ++ L+K GG+ T +R GA I Sbjct: 177 AGKKQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIEN 236 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R + Sbjct: 237 QSSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKVRIKTL 296 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 + IPD+ + +N LFSP D+ +YG F + + + ++ + Sbjct: 297 SLGVVIPDITFELAKRNEDMYLFSP---YDVERIYGVAFSDINVSEKYYEMVDDSRIRKT 353 Query: 540 -ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I+A ++ + + FE+G+P++ F+D N G + SNLC+EI S Sbjct: 354 KINAREFFQTIAEVQFESGYPYVMFEDTVNR--SNPIEGKIIMSNLCSEILQVSKPSIYH 411 Query: 599 VCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650 S NL + D D L T+ TA+R L V D + ++ ++ N Sbjct: 412 DDLSYAEIGKDISCNLGSLNIAMTMDGDDLGKTVETAIRSLTAVSDQSDIRSVPSIERGN 471 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYS 709 A+GLG M L H+ Y S E ++ + +++HAI AS+E+A+ERG + Sbjct: 472 DMSHAVGLGQMNLHGYLAREHVYYGSEEGLDFTNIYFYTVTYHAIRASMEIAKERGVTFE 531 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763 F+ S + G F I E + E + +R W +L V GM N N Sbjct: 532 GFESSKYANGEFFAKYIEKEWEPQTERVRELFAKHHIPTREDWIQLAADVAQYGMYNQNL 591 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I G + SI P + ++ G F+ N+ Sbjct: 592 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTND------------- 638 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 + ++EI +I++ + + +DQ SL L+ + + Sbjct: 639 ------------------NLEYFQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 680 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 681 TRDINRAQIYAWRKGIKTIYYIR 703 >gi|256832971|ref|YP_003161698.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia denitrificans DSM 20603] gi|256686502|gb|ACV09395.1| ribonucleoside-diphosphate reductase, alpha subunit [Jonesia denitrificans DSM 20603] Length = 705 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 170/737 (23%), Positives = 293/737 (39%), Gaps = 79/737 (10%) Query: 195 ESDLETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 L+ + + L E + + + AR + + + +K + Sbjct: 2 TDQLDYHALNAMLNLYGPNGEIQFDKDREAARQYFLQHVNQNTVFFHSLEEKLDY----- 56 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +E + + + L + + +LG Y Y L Sbjct: 57 --------LVENDYYEASVLNTYSREFITRLFDAAYAMKFRFETFLGAFKYYTSYTLKTF 108 Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 +G R E + VA+ LA E A++ + + S F +TPT NSG + + Sbjct: 109 DGKRYLERFEDRVCMVALTLA---DGDETLALQLVDEIISGRFQPATPTFLNSGKKQRGE 165 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SCFL + D++ I + L+K GG+ + +R GA I +S GVIP Sbjct: 166 PVSCFLLRIEDNMESIARGVNSALQLSKRGGGVALLLSNLREFGAPIKKIENQSSGVIPV 225 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD Sbjct: 226 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKVRIKTLSIGVVIPD 285 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546 + + +N LFSP D+ +YGK F + + ++ + I A + Sbjct: 286 ITFELAKKNEDMYLFSP---YDVERIYGKPFADVNVSELYHEMVDDGRIRKTKIKARDFF 342 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAV 599 + + + FE+G+P++ F+D N G + SNLC+EI N + Sbjct: 343 QTIAELQFESGYPYVMFEDTVNK--SNPIKGKITHSNLCSEILQVSTPSTYNDDLSYKEI 400 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658 S NL + D L +T+ TA+R L V D + ++ + N AIGL Sbjct: 401 GRDISCNLGSLNIAKAMDGGNLGATVDTAIRALTAVSDQTSIDSVPSIRHGNELGHAIGL 460 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717 G M L HI Y S E ++ +++HAI AS +LA ER A+ F+ S + Sbjct: 461 GQMNLHGFLAREHIHYGSEEGIDFTSIYFYAVAYHAIKASNQLAIERGRAFGGFEDSTYA 520 Query: 718 QGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G + + E ++ + ++ W ELKK V G+ N N A+ PT Sbjct: 521 SGEYFDKYTNRVWEPTTQRVKDLFEKFGIAIPTQDDWRELKKSVMEHGIYNQNLQAVPPT 580 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + ++ G ++ N Sbjct: 581 GSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAPYMTN-------------------- 620 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + + + A+EI ++++ + + +DQ SL L+ + + + ++ Sbjct: 621 -----------ENLEYYQDAYEIGYEKIVDTYAAATEHVDQGLSLTLFFKDTATTRDVNR 669 Query: 888 IYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 670 AQIYAWRKGIKTLYYIR 686 >gi|291280756|ref|YP_003497590.1| ribonucleotide reductase, large subunit [Deferribacter desulfuricans SSM1] gi|290755458|dbj|BAI81834.1| ribonucleotide reductase, large subunit [Deferribacter desulfuricans SSM1] Length = 868 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 151/667 (22%), Positives = 275/667 (41%), Gaps = 99/667 (14%) Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA----- 325 ++ + + L + D L + + F VA Sbjct: 26 WEYINKHVNEYYSLLHKKLDLGSTTDSL--FEGIFQKRNKKDYYKSFLDVFHTVAFKVAS 83 Query: 326 --------MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP 377 + + + K+ V ++NL++ FM ++P L N+ + + S+CF+ + Sbjct: 84 AKFVKYHNLNNYVTDINFIKKYVTYFNLMAQGIFMPNSPLLVNADSNNMCYSACFVLDID 143 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D + IF L+ A++ K GG G +++ +R GA + T G+S G + F+++ N Sbjct: 144 DSMESIFETLKNTALIHKSGGGTGFNFSKLRQKGALVSSTKGESSGALSFMQIYNSATEH 203 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V QGG R+GA L H D+EEF+ +++ D + + N + I + F++ + + Sbjct: 204 VKQGGVRRGANMGILNVDHPDIEEFIKIKR----DNKTLTNFNISVGITNKFLEAIKNDE 259 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W L P+ KV +K+ A L+ +++ + G Sbjct: 260 EWELKEPNT---------------------------GKVIKKVRAKQLFDEIVKSAWICG 292 Query: 558 HPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-----F 611 P + D N + ++ G + ++N C E L + CNLGSINL Sbjct: 293 DPGLLNIDTINKYNYLKYIKGNITATNPCGEQPLFPN----EACNLGSINLAKFVKSDAH 348 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 N FD D A + LD+VIDIN + + + ++ R IGLG+MGF AL + Sbjct: 349 NNAYFDIDAFAKVVEDCTHFLDDVIDINNYPLPQITEAVEETRKIGLGVMGFADALIKMG 408 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 I Y S EA+ + D + AS++ ++ G + LL + Sbjct: 409 ISYDSNEALTMIDSVGSVLKEKTEEASIKYGEQYGVFPLAD--------------KLLEK 454 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYV 791 V+ N+ SR + +K + RN++ IAPT TI+ I G S I+P + Y+ Sbjct: 455 VKKLYKENKISRKEYTYIKDKYIK--RRNASLTCIAPTGTISLIAGCSSGIEPLFSLGYI 512 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + + G V W++++ + ++ + + TA +I Sbjct: 513 REDSFGTRIV--------------WNDSVKHFVDKNN------------IPEYVKTAMDI 546 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 P W ++ S+ Q++++ A S + L E + + + IY +A + K R +S Sbjct: 547 SPDWHLKIQSKWQEYVESAVSKTINLPETATEEDIANIYLKAMELNCKGITVYRDKSKGV 606 Query: 911 VEKSTLK 917 +T+ Sbjct: 607 QVLNTID 613 >gi|303232582|ref|ZP_07319268.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium vaginae PB189-T1-4] gi|302481369|gb|EFL44443.1| ribonucleoside-diphosphate reductase, alpha subunit [Atopobium vaginae PB189-T1-4] Length = 766 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 184/752 (24%), Positives = 312/752 (41%), Gaps = 74/752 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E ++ + L P ++ + + + L + E Sbjct: 59 KEACKRYIEQEIMPRIMHFESL-PARLAYMVQHNYYDHTVINAYSTPFIQKL-YAIAAEE 116 Query: 290 DFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 F F +G Y Y LH + + Q RV M E+ A + + + Sbjct: 117 HFEFTSLMGAMKFYIAYALHTDDGAQILEQFE-DRVVMCAMFLANGNEELAKQLVKDMMA 175 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N+G + + SC+L V D + I + + L+K GG+ T + Sbjct: 176 NRFQPATPTFLNAGKKRRGEYISCYLLRVEDTMESIARGISTSLQLSKRGGGVALCLTNL 235 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R A I G ++ GV+P +K+ DT NQ G+R+GA YL H D+ FLD ++ Sbjct: 236 RETAAPIKGFENQASGVVPVMKLLEDTFSYANQLGQRQGAGAVYLHAHHPDIMRFLDTKR 295 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD+ + QN LFSP +V +++ + + Sbjct: 296 ENADEKVRIKSLSLGVVIPDVTFRLAQQNKDMALFSPYDVKREYNV---ALSDLSVSEKY 352 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 ++ + ISA ++ + + FE+G+P+I F+D N +P + G + SNLC+ Sbjct: 353 DELCANPRIHKTYISARKFFQTIAELQFESGYPYIMFEDTVNYCNPHKRAGRIVMSNLCS 412 Query: 587 EITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + CNLGSIN+ D S +R A+ LD Sbjct: 413 EIAQVSTPSSYTEDLSFTHVGVDVCCNLGSINIARAMD----DAPHFGSLVRHAIFALDR 468 Query: 635 VI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V + KK N+ + A+GLG M L HI Y SPEAV+ D +++H Sbjct: 469 VSRSSDLACAPSVKKGNNLNHAVGLGAMNLHGFLATHHIYYNSPEAVDFVDMFFYAMAYH 528 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPI-----DSIGLLAEVR---DELAMNRTSRLP 745 A SAS +LAQ G++S F S + G + D+ VR EL + +R Sbjct: 529 AFSASCDLAQTYGSFSGFSNSEYADGSYFDKYTGADTAPSTPRVRALLAELGLTLPTRDD 588 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L +++K G+ N++ MA+APT +I+ + + S+ P + + V ++ Sbjct: 589 WVSLVEKIKVRGLANAHLMAVAPTGSISYLSSCTPSLQPVVSAVETRKEGKIGRVYVPAY 648 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQ 864 I +D + + A+E+ +I + Q Sbjct: 649 ------------------------------NITNDNYRYYQDGAYEVGYEAIINIVAAAQ 678 Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 K +DQA SL L++ + + L+ Y A+ K+ YY+R + + L+G + Sbjct: 679 KHVDQAISLTLFMTSQATTRDLNKAYIYAFKKRCKSIYYVR------IRQDVLEGSEHLE 732 Query: 924 NAV--PVTDPNSSTHSLGIPSSCTSDTECEVC 953 N + ++ +S + CT +EC+VC Sbjct: 733 NDEVIAGSADGAAGNSSSVNFVCTGSSECQVC 764 >gi|222109642|ref|YP_002551906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax ebreus TPSY] gi|221729086|gb|ACM31906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax ebreus TPSY] Length = 813 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 146/637 (22%), Positives = 247/637 (38%), Gaps = 79/637 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + + +L ++YF + F RVA LA E E ++A+E F + L + Sbjct: 16 PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDMRQALEARFLDNLRAGAIG 71 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D GI+ AL+E A + GG+G D+ Sbjct: 72 AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGALVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L G Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMEAVEQDRDWELVHGAAPGAELQAQG--------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 V+R + A LW ++ ++ P I F D N + + + ++N Sbjct: 239 --AHQRADGQWVYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637 C E L C+LG I L N FD+D + T VR LDNV+D Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + + + + R IG+G G + L +L Y E ++A + E + A A Sbjct: 353 VTFWPLPQQQAESAAKRRIGVGFTGMGNTLAMLCKRYDRREGRDMAVQIAERMRNAAYRA 412 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SVELA+E+GA+ F + LA + +++K ++ G Sbjct: 413 SVELAKEKGAFPKF-------------------DADGYLAKGTFASRLPADIQKAIRKHG 453 Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 +RNS+ ++IAPT T++ S I+P + Y + D + + ++V + Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWSYTRRKREADGS-KSEYVVEDYA---- 508 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 K G + ++ +A ++ + Q ++D A S + Sbjct: 509 -----WRLYKTLGGDVNHLP-------AYFVSAMDMAAADHVAMMEAVQPFVDTAISKTV 556 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 + + +Y QAW GLK R S Sbjct: 557 NVPEDYPYADFKGLYMQAWHSGLKGLATYRPNSILGA 593 >gi|116670902|ref|YP_831835.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter sp. FB24] gi|116611011|gb|ABK03735.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Arthrobacter sp. FB24] Length = 727 Score = 319 bits (817), Expect = 2e-84, Method: Composition-based stats. Identities = 168/736 (22%), Positives = 293/736 (39%), Gaps = 74/736 (10%) Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 Y GL +L L L R + + + H+++ Sbjct: 26 YKGLGYHELNAML-----NLYGPNGEIQFEADREAAHQYFLQ-----HVNNNTVFFHDLE 75 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 E ++ R + + L N ++ +LG Y Y L Sbjct: 76 ----EKLDYLVKNQYYERETLDQYTMNFIRELFNRAYKKKFRFETFLGAFKFYTSYTLKT 131 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + RV M E+ A++ + + F +TPT N+G + Sbjct: 132 FDGKRFLERYED---RVCMVALHLARGDEQLALQMVDEIIEGRFQPATPTFLNAGKKQRG 188 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I ++ L+K GG+ T +R +GA I +S GVIP Sbjct: 189 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIP 248 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 249 VMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIP 308 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545 D+ + ++ LFSP D+ +YG F + + ++ + I A Sbjct: 309 DITFELAKRDEDMYLFSP---YDVERVYGMPFSDVSVTEKYYEMVDDSRIKKTKIKAREF 365 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI---TLNSSSEETAVCNL 602 ++ + + FE+G+P+I F+D N G + SNLC+EI + ++ + + Sbjct: 366 FQTLAEIQFESGYPYIMFEDTVNR--ENPIDGKIIMSNLCSEILQVSQPTTYHDDLSYDQ 423 Query: 603 G----SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 S NL + D TI TA+R L V D+ N ++ + N AIG Sbjct: 424 TGKDISCNLGSLNIAKTMDSPDFGLTIETAIRSLSAVSDMSNITSVPSIARGNDQSHAIG 483 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L + Y S E ++ + + +HA+ AS +LA + + F+ S + Sbjct: 484 LGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNKLAIQTGQTFGGFEKSKY 543 Query: 717 DQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 G F + + +V + ++ ++ W ELK V G+ N N A+ PT Sbjct: 544 ASGEFFDKYTDQEWVPQTEKVAELFKNIHIPTQDDWRELKASVMEHGIYNQNLQAVPPTG 603 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + ++ G +L N+ Sbjct: 604 SISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTND-------------------- 643 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 644 -----------NLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINKA 692 Query: 889 YRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 693 QIYAWKKGIKTIYYIR 708 >gi|160903303|ref|YP_001568884.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Petrotoga mobilis SJ95] gi|160360947|gb|ABX32561.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Petrotoga mobilis SJ95] Length = 840 Score = 319 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 176/699 (25%), Positives = 298/699 (42%), Gaps = 93/699 (13%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIE-MPQAFFMRVAMGLALKETEKEKR 338 L ++ E + IL DRYFL G+ +E R+A +A E Sbjct: 4 LNKWIQKEP----SKNAITILKDRYFLKDGEGNYLESTWDEVAKRIARHVAAAEVNYTND 59 Query: 339 AVE-------FYNLLSSFHFMCSTPTLFN---------------------------SGTR 364 E FY L+ S F+ ++PT+FN S T+ Sbjct: 60 IEEIKNAEEHFYQLIKSRIFLPNSPTIFNAGKTMDRQLFKKDIEETTLEDYKTIFDSRTK 119 Query: 365 HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 H LS+CF+ + D + IF A++ A++ KY GG+G D++ +R G+ I GT GKS G Sbjct: 120 HNMLSACFVIPMDDSMSAIFDAVKNAALIMKYGGGVGYDFSVLRPKGSSIAGTGGKSSGP 179 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNTAN 483 I F+ V N A + QGG R+ A A L H DV +F++ +K+ ++ +++ Sbjct: 180 ISFMHVFNTAASTIEQGGARRAAQMAVLRYDHPDVFDFINSKKDNKGNNVLNYFNISVNI 239 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 P F K + ++ TL P + + I A Sbjct: 240 DNPKEFKKMLEEDGDLTLEHPA----------------------------SSIRKTIKAN 271 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 L KM+ ++TG P + F N V ++N C E L CNLG Sbjct: 272 DLMNKMVENAWKTGDPGMLFLGRHNQYYAMSEHTPVTATNPCGEEPLPPF----GSCNLG 327 Query: 604 SINLLAHFANNQ------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 SI++ + D + + AVR LD+VI+ N + +++ ++ + R IG Sbjct: 328 SIDVAKLVEDMDLGNPNSPDISEFQEIVYWAVRFLDDVIESNIYPLKEIEEISKKQRFIG 387 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG+MG AL+ +PY S +A + + +++ + AS ELA+ERG + F+ S + Sbjct: 388 LGMMGLADALYKKELPYNSEQARKFMAKLTAELAYFSHVASTELAKERGNFPDFQRSKYP 447 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 G P + + ++ + + E K RN IAPT +I+N+ Sbjct: 448 NGFIPFPMLDDEIDEDIKVWNEKIRQHFQGEATKY-----KRNVQTNTIAPTGSISNLAD 502 Query: 778 VSQSIDPSYQNLYVK--SNMSGD---FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 S I+P++ YV+ +N GD + +N L+ K E + +++ GSI Sbjct: 503 TSSGIEPNFLLSYVRYMTNKEGDRVPLSYINPILME--KIGTNMTEELKAEIIE-KGSIQ 559 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 NI+ IP+++KKI T+ +I P + + Q ++D + S + + + + + IY Q Sbjct: 560 NIDSIPNEIKKIFVTSMDIPPKDHLLAQHVIQSYLDASCSKTINMPKSSTIEDVKAIYLQ 619 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 A + LK R S + ++ + + + Sbjct: 620 ALELNLKGLTIYRDGSLETQVLTSSSQEEKETSETQGKS 658 >gi|227496666|ref|ZP_03926942.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM 15434] gi|226833814|gb|EEH66197.1| ribonucleoside-diphosphate reductase [Actinomyces urogenitalis DSM 15434] Length = 717 Score = 319 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 166/721 (23%), Positives = 290/721 (40%), Gaps = 81/721 (11%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + AR + + + +K + +EEG + + Sbjct: 38 DADHEAARQYFLQHVNQNTVFFHDLEEKLEY-------------LVEEGYYEGHILDKYS 84 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332 + + + +LG Y Y L +G R E + RV+M Sbjct: 85 PDFVKQVFKAAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFED---RVSMVALALA 141 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391 E+ A++ + + F +TPT N G + SCFL + D++ I + Sbjct: 142 DGDEQLALDLVEEMMTGRFQPATPTFLNEGKAQRGEPVSCFLVRIEDNMESIARGINSAL 201 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R +GA I +S GV+P +K+ D+ NQ G R+GA Y Sbjct: 202 QLSKRGGGVALLLTNLREMGAPIKRIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 261 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + LFSP D+ Sbjct: 262 LHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNKEPMYLFSP---YDVE 318 Query: 512 DLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 +YG F + + + ++ + I A ++ + + FE+G+P++ F+D N Sbjct: 319 RVYGVPFSDISVTEKYREMVDDPRIHKTRIDARQFFQTLAEIQFESGYPYVMFEDTVNKA 378 Query: 571 SP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 +P + V ++ E + + CNLGS+N+ D Sbjct: 379 NPIKGKVIMSNLCSEILQVSEASTLNEDLSFAHVGKDISCNLGSLNIAKT-----MDSPD 433 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 TIRTAVR L V D ++ ++ + NH AIGLG M L I Y S E Sbjct: 434 FMRTIRTAVRGLTAVSDQVDLPSVPSINRGNHESHAIGLGQMNLHGYLARERIFYGSEEG 493 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVR 733 ++ + + + A++A+ ELA ER ++ F+ S + G F D + + +V+ Sbjct: 494 LDFTNVYFACVLYAALTATNELAVERGESFVGFEDSDYYSGAFFEKYTAQDFLPVTDKVK 553 Query: 734 DELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + +R W L KR++ GM N N A+ PT +I+ I + SI P + Sbjct: 554 ELFERSSITVPTREDWAALAKRIRETGMYNRNLQAVPPTGSISYINNSTSSIHPIVAKIE 613 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G ++ N + + + A+ Sbjct: 614 IRKEGKIGRVYYPAPYMTN-------------------------------ENLEYYQDAY 642 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R R A Sbjct: 643 EIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWRKGIKTLYYIRLRQA 702 Query: 909 T 909 Sbjct: 703 A 703 >gi|163842201|ref|YP_001626606.1| ribonucleotide-diphosphate reductase subunit alpha [Renibacterium salmoninarum ATCC 33209] gi|162955677|gb|ABY25192.1| ribonucleoside-diphosphate reductase alpha chain [Renibacterium salmoninarum ATCC 33209] Length = 706 Score = 319 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 174/741 (23%), Positives = 296/741 (39%), Gaps = 84/741 (11%) Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 Y GL +L L L + + N R + + + H+++ Sbjct: 5 YQGLGYHELNAML-----NLYDADGNIQFDADREAAHQYFLQ-----HVNNNTVFFHDLE 54 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 E ++ R + + L N ++ +LG Y Y L Sbjct: 55 ----EKLDYLVKNQYYERETLDQYTMNFIRELYNRAYKKKFRFETFLGAFKFYTSYTLKT 110 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + RV M E A++ + + F +TPT N+G Sbjct: 111 FDGKRFLERYED---RVCMVALHLARGNEDLALKLVDEIIDGRFQPATPTFLNAGKAQRG 167 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I ++ L+K GG+ T +R +GA I +S GVIP Sbjct: 168 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIP 227 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ +P Sbjct: 228 VMKLLEDSFSYANQLGARQGAGAVYLHAHHPDINRFLDTKRENADEKIRIKTLSLGVVVP 287 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545 D+ + ++ LFSP D+ +YG F + + ++ + I A Sbjct: 288 DITFELAKRDEDMYLFSP---YDVEKVYGIPFSDISVTEKYYEMVDDSRIKKTKIKAREF 344 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593 ++ + + FE+G+P+I F+D N +P G + SNLC+EI + Sbjct: 345 FQTLAEIQFESGYPYIMFEDTVNRANPI--EGKIIMSNLCSEILQVSKPTVYNDDLSYAE 402 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652 + + CNLGS+N+ D +TI T++R L V D+ + ++ K N Sbjct: 403 TGKDISCNLGSLNIART-----MDSPDFGNTIETSIRALSAVSDMSDIRSVPSIAKGNRA 457 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711 RAIGLG M L + Y S E ++ + + +HA+ AS LA E + F Sbjct: 458 SRAIGLGQMNLHGYLARERVHYGSEEGLDFTNIYFYTVVYHALRASNLLAIETGETFGGF 517 Query: 712 KGSLWDQGVFPI---DSIGLLAEVRD---ELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 + S + G F D L R ++ ++ W LK + G+ N N A Sbjct: 518 ENSKYASGEFFDKYTDQERLPQTERVRELFANVHIPTQDDWRSLKASIMEHGIYNQNLQA 577 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT +I+ I + SI P + ++ G +L N+ Sbjct: 578 VPPTGSISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND--------------- 622 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 + + A+EI +I++ + + +DQ SL L+ + S + Sbjct: 623 ----------------NLEFYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTASTR 666 Query: 884 KLDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 667 DINKAQIYAWRKGIKTVYYIR 687 >gi|41409198|ref|NP_962034.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398018|gb|AAS05648.1| NrdE [Mycobacterium avium subsp. paratuberculosis K-10] Length = 726 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 173/728 (23%), Positives = 295/728 (40%), Gaps = 79/728 (10%) Query: 212 KEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGV 264 E +Y + A L + ++VL Q + + E I E Sbjct: 24 DETDYHALNAMLNLYDADGKIQFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENY 83 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFM 322 R + + + L + ++ +LG Y Y L +G R E + + Sbjct: 84 YEREVLDQYSRNFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVV 143 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381 VA+ LA + A + + + F +TPT NSG + + SCFL + D++ Sbjct: 144 MVALTLAAGD---TGLAEKLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNME 200 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I ++ L+K GG+ T +R GA I +S GVIP +K+ D+ NQ Sbjct: 201 SIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQL 260 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + +N L Sbjct: 261 GARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYL 320 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPW 560 FSP D+ +YG F + + ++ + I A ++ + + FE+G+P+ Sbjct: 321 FSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPY 377 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608 I F+D N +P G + SNLC+EI + + CNLGS+N+ Sbjct: 378 IMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA 435 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D A TI A+R L V D + ++ ++ N+ AIGLG M L Sbjct: 436 KT-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYL 490 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726 I Y S E ++ + + +HA+ AS +A ERG + F+ S + G F Sbjct: 491 AREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYT 550 Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + E + + ++ W LK+ V+ G+ N N A+ PT +I+ I Sbjct: 551 EQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHS 610 Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ G ++ N+ Sbjct: 611 TSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------------------- 642 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896 + + A+EI +I++ + + +DQ SL L+ + + + ++ AW G Sbjct: 643 ---NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKG 699 Query: 897 LKTTYYLR 904 +KT YY+R Sbjct: 700 IKTLYYIR 707 >gi|291302019|ref|YP_003513297.1| ribonucleoside-diphosphate reductase adenosylcobalamin-dependent [Stackebrandtia nassauensis DSM 44728] gi|290571239|gb|ADD44204.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Stackebrandtia nassauensis DSM 44728] Length = 946 Score = 318 bits (815), Expect = 3e-84, Method: Composition-based stats. Identities = 128/638 (20%), Positives = 224/638 (35%), Gaps = 66/638 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + + E LL +F ++P FN GT Q+S+CF+ +V D + I Sbjct: 119 GYFASPKDAQIFEEELTWLLLHQYFSFNSPVWFNVGTPDPQQVSACFILSVDDTVDSILN 178 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 179 WYREEGLIFKGGSGAGLNLSRIRASKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 237 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF+D + D R + + N + + Sbjct: 238 RAAKMVILDVDHPDIEEFIDTKAREEDKVRALRDAGFDMDLGGKDIVSVQYQNANNSVRV 297 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V + R + ++ A + Sbjct: 298 TDEFMRAVEAGGDY---------------------------ALRARLDGSEIERLDAKTV 330 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +RKM +E P I F + N G + SN C+E + + CNL S+ Sbjct: 331 FRKMAQAAWECADPGIQFDNIINDWHTNPETGRITGSNPCSEYMH----IDNSSCNLASL 386 Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL+ ++ FD + + + ++ I E K+ HR +G+G Sbjct: 387 NLMKFLKDDGSFDVELFTKAVEFVITAMEISISFADFPTEAITKNTRAHRQLGIGYANLG 446 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L Y S E +A ++ + S ELA G Y ++ + Sbjct: 447 ALLMASGFAYDSDEGRAVAAGITSLMTGVSYRRSAELAGVVGPYDAYALNADAHKRVMRK 506 Query: 725 SIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 V+ M+R + W G RNS IAPT TI + + Sbjct: 507 HAAACDNVKTYGVMDREILKAAVSEWQNGNNIGDKNGWRNSQASVIAPTGTIGFMMDCDT 566 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDE--AMISDLKYHDGSIGNIER 836 I+P + + K G +VN + LK E I++ G + + Sbjct: 567 TGIEPDLALVKFKKLVGGGSMQIVNQTVPRALKTLGYQTESIEAITEYIAEHGHVVDAPG 626 Query: 837 IPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + + + A I M + + Q ++ A S + + E + + + IY ++ Sbjct: 627 LRPEHYSVFDCAMGERSISAMGHVRMMAAAQPFVSGAISKTVNVPESATVEDFEEIYFES 686 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTD 930 W +GLK R S S K V + Sbjct: 687 WKLGLKALAVYRENSKVGQPLSVSKKDTEADEPEKVIE 724 >gi|325963522|ref|YP_004241428.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469609|gb|ADX73294.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 706 Score = 318 bits (815), Expect = 3e-84, Method: Composition-based stats. Identities = 165/677 (24%), Positives = 280/677 (41%), Gaps = 70/677 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E ++ R + + L N ++ +LG Y Y L +G Sbjct: 55 EKLEYLVKNDYYERETLDQYTMNFIRELFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 114 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M E+ A + + + F +TPT N+G + +L S Sbjct: 115 RFLERYED---RVCMVALHLARGNEQLATQMVDEIIEGRFQPATPTFLNAGKKQRGELVS 171 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ T +R +GA I +S GVIP +K+ Sbjct: 172 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKL 231 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 232 LEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITF 291 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + ++ LFSP D+ +YG F + + ++ + I A ++ + Sbjct: 292 ELAKRDEDMYLFSP---YDVERVYGMPFSDVSVTEKYYEMVDDSRIKKTKIKAREFFQTL 348 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I F+D N +P G + SNLC+EI + + + Sbjct: 349 AEIQFESGYPYIMFEDTVNRANPI--DGKIIMSNLCSEILQVSQPTTYNDDLSYADTGKD 406 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D TI TA+R L V D+ N ++ K N AI Sbjct: 407 ISCNLGSLNIAKT-----MDSPDFGLTIETAIRSLSAVSDMSNITSVPSIAKGNDQSHAI 461 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L + Y S E ++ + + +HA+ AS LA E + F+ S Sbjct: 462 GLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVYHAVRASNLLAIETGQTFGGFEKSK 521 Query: 716 WDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 + G + + + +VR+ ++ ++ W LK V G+ N N A+ PT Sbjct: 522 YASGEYFDKYTEQEWVPQTEKVRELFKNVHIPTQADWLALKASVMEHGIYNQNLQAVPPT 581 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + ++ G +L N+ Sbjct: 582 GSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTND------------------- 622 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 623 ------------NLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINK 670 Query: 888 IYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 671 AQIYAWKKGIKTIYYIR 687 >gi|220912865|ref|YP_002488174.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter chlorophenolicus A6] gi|219859743|gb|ACL40085.1| ribonucleoside-diphosphate reductase, alpha subunit [Arthrobacter chlorophenolicus A6] Length = 712 Score = 318 bits (815), Expect = 3e-84, Method: Composition-based stats. Identities = 167/677 (24%), Positives = 280/677 (41%), Gaps = 70/677 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E ++ R + + L N ++ +LG Y Y L +G Sbjct: 61 EKLEYLVKNDYYERETLDQYTMNFIRDLFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 120 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M E+ A++ + + F +TPT N+G + +L S Sbjct: 121 RFLERYED---RVCMVALHLARGNEQLALQMVDEIIDGRFQPATPTFLNAGKKQRGELVS 177 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ T +R +GA I +S GVIP +K+ Sbjct: 178 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFALTNIREVGAPIKQIENQSSGVIPVMKL 237 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 238 LEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITF 297 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + ++ LFSP D+ +YG F + + ++ + I A ++ + Sbjct: 298 ELAKKDDDMYLFSP---YDVEKVYGMPFSDVSVTEKYYEMVDDSRIKKTKIKAREFFQTL 354 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 355 AEIQFESGYPYIMFEDTVNRANPI--DGKIIMSNLCSEILQVSQPTTYHDDLSYDDTGKD 412 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D TI TA+R L V D+ N ++ K N AI Sbjct: 413 ISCNLGSLNIAKT-----MDSPDFGLTIETAIRSLSAVSDMSNITSVPSIAKGNDQSHAI 467 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L + Y S E ++ + + FHA+ AS LA E + F+ S Sbjct: 468 GLGQMNLHGYLARERVHYGSEEGLDFTNIYFYSVVFHAVRASNLLAIETGQTFGGFEKSK 527 Query: 716 WDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 + G F + + +VR+ ++ ++ W LK V G+ N N A+ PT Sbjct: 528 YASGEFFDKYTEQEWVPQTEKVRELFKDVHIPTQADWLALKASVMEHGIYNQNLQAVPPT 587 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + ++ G +L N+ Sbjct: 588 GSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTND------------------- 628 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 629 ------------NLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDINK 676 Query: 888 IYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 677 AQIYAWKKGIKTIYYIR 693 >gi|319761225|ref|YP_004125162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans BC] gi|317115786|gb|ADU98274.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Alicycliphilus denitrificans BC] Length = 811 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 144/663 (21%), Positives = 247/663 (37%), Gaps = 79/663 (11%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFM 352 + + +L ++YF + F RVA LA +E +E F + L + Sbjct: 16 PISMDVLKEKYFKDGESDV----EDLFRRVARALASVEREDIREAMQARFLDNLRAGAIG 71 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D GI+ AL+E A + GG+G D+ Sbjct: 72 AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDAGYPGIYEALREAAETMRRGGGVGYDF 131 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + GT + G ++ V + + V G R+GA L H DV +F+ Sbjct: 132 SRIRPRGAMVKGTASMASGPCSYINVFDQSCSTVESAGARRGAQMGVLRIDHPDVLDFIT 191 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + +PD FM+ V Q+ W L G E Sbjct: 192 AKRTPG----RWNNFNVSVGVPDAFMQAVEQDREWELVH-------SAAPGAELLKEGAR 240 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 ++R + A LW ++ ++ P I F D N + + + ++N Sbjct: 241 QRADGQ----WIYRTVRARELWDTIMKSAYDFAEPGILFLDQINTDNNLHYTETIQATNP 296 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637 C E L C+LG I L N FD+D + T VR LDNV+D Sbjct: 297 CGEQPLPPY----GCCDLGPIILTRFVRNPFGLHGEASFDFDAFEQAVATQVRALDNVLD 352 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + + + R IG+G G + L +L Y + ++A + E + A A Sbjct: 353 VTFWPLPQQQAEAAAKRRIGVGFTGMGNTLAMLCKRYDRQDGRDMAVKIAERMRNAAYRA 412 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SVELA+E+GA+ F+ LA + ++++K+++ G Sbjct: 413 SVELAKEKGAFPKFQ-------------------ADGYLAKGTFASRLPEDIQKQIRKHG 453 Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 +RNS+ ++IAPT T++ S I+P + Y + D + + ++V + Sbjct: 454 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGS-KSEYVVEDYA---- 508 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 K G + + +A ++ + Q ++D A S + Sbjct: 509 -----WRLYKTLGGDVNQLP-------AYFVSAMDMAAADHVAMMEAVQPYVDTAISKTV 556 Query: 876 YLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + + +Y QAW LK R S P +P Sbjct: 557 NVPEDYPYADFKGLYMQAWHSRLKGLATYRPNSILGAVLEVPAAEAKPAKGEPAPEPAQP 616 Query: 935 THS 937 Sbjct: 617 VDP 619 >gi|56478191|ref|YP_159780.1| ribonucleotide reductase, coenzyme B12-dependent [Aromatoleum aromaticum EbN1] gi|56314234|emb|CAI08879.1| Ribonucleotide reductase, Coenzyme B12-dependent [Aromatoleum aromaticum EbN1] Length = 963 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 152/635 (23%), Positives = 255/635 (40%), Gaps = 74/635 (11%) Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-- 381 A+ + E ++ +F F+ + +GT L +CF+ V D + Sbjct: 50 ALAIVEAEDKRAHWEAKFLE-AQEKGFVPAGRINSAAGTNLQATLINCFVQPVGDSVTEA 108 Query: 382 -----GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 GI+ AL + A + GG+G D++ +R GA + GT + G + +++V + + Sbjct: 109 VDGRPGIYTALAQAAETMRRGGGVGYDFSSIRPKGALVRGTLSNASGPVSYMRVFDRSCE 168 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 V G R+GA L H DVEEF+ + D + N + + D FMK V + Sbjct: 169 TVESAGARRGAQMGVLRCDHPDVEEFIHAK-----DHGDLTNFNISVGVSDAFMKAVDTD 223 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 A L E + G + V+RK+ A LW +++ ++ Sbjct: 224 ADVELAHKAEPIEELKAAGAY-----------QRDDGLWVYRKLPARELWDQIMRSTYDH 272 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ- 615 P I F D N + + + ++N C E L C+LGSINL + Sbjct: 273 AEPGILFLDRMNQDNNLHYCETIEATNPCAEQPLPPY----GCCDLGSINLTPFIKHPFT 328 Query: 616 ----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 FDY + A+R+LDNV+D+ + + + + R +GLG G AL +L Sbjct: 329 DKAEFDYPAFGKVVDVAIRMLDNVLDVTHWPLPQQENEAQSKRRVGLGFTGLGDALIMLC 388 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y SP+A +A + E++ A ASVELA+ERGA+ F L+ G Sbjct: 389 KRYDSPDARAVATKISEYMRDRAYLASVELAKERGAFPLFNADLYLSGGNF--------- 439 Query: 732 VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNL 789 + +LK +++ G+RNS+ ++IAPT TI+ S I+P + Sbjct: 440 ----------ASRLPADLKDKIRKHGLRNSHLLSIAPTGTISLAFADNASNGIEPPFSYT 489 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + D T + V + K+ G++ D+L TA Sbjct: 490 YTRRKRMADGTYK-EYPVEDYA---------WRLFKHLGGNV-------DELPPYFVTAL 532 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 EI + + ++D + S + + + + + +Y AW GLK R S Sbjct: 533 EISAQAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFEDLYLSAWKAGLKGLATYRPNSV 592 Query: 909 TSVEKS-TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 S T + + + PN +P+ Sbjct: 593 LGSVLSVTPSAAPKQPQDIEFSGPNKRLAIKSLPA 627 >gi|13242411|ref|NP_077434.1| ribonucleotide reductase subunit 1 [Cercopithecine herpesvirus 9] gi|11036563|gb|AAG27192.1|AF275348_12 ribonucleotide reductase, large subunit [Cercopithecine herpesvirus 9] Length = 783 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 167/688 (24%), Positives = 285/688 (41%), Gaps = 79/688 (11%) Query: 286 KYERDFA----------FEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKE 332 ERD LGLQ Y + ++IE + FF+R+A + ++ Sbjct: 106 DIERDILEPFRQTQYVKLTSLGLQSALKYEEFYLTKLEDNKIESLEQFFIRLATAVTIEV 165 Query: 333 TEK----------------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 + F+N+LS + +TP + G +SC++ Sbjct: 166 MKIPNIAYLIPGTYSAYTWTDMCSVFFNMLSRQLIIPATPVMMFLGRETGATASCYIMDP 225 Query: 377 P--DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + I + + + GG+G + I + +++G + LK+ + Sbjct: 226 KSTNVRDAIRAITGDVGTVLQSRGGVGISLQSLN-----IVPNHTETKGALAILKLLDSM 280 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV 493 +A+N +R VC Y+E WH+D+ L R D+ R ++ W+PDLF+KR Sbjct: 281 VMAINSDSERPTGVCVYVEPWHVDIRSILCTRGMLVRDEAYRCDNIFYCMWMPDLFLKRY 340 Query: 494 TQ------NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 Q N WTLF + + L +LYG +F Y ERQ I L Sbjct: 341 IQYVQGTQNVTWTLFD-NRANVLCNLYGDDFTAEYLKLERQ-----GIGVTTIPIQELAF 394 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ TG P++ FKD CN G + SNLCTE+ ++ VCNL +IN Sbjct: 395 LIVKSSAVTGSPFVMFKDACNRNYHMNVQGDAITGSNLCTEVIQKANPNMHGVCNLANIN 454 Query: 607 LLAHFANNQFD------YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 + N D + L +RTAV L+ V+ +K+ + +R++G+G+ Sbjct: 455 IANCILNGDEDGPPEFSFADLTFAVRTAVVFLNGVLAAGNFPCKKSCEGVANNRSLGIGI 514 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER--GAYSSFKGSLWDQ 718 G +A L + P A + E E + + A+ S+ + ++ + F+ S + Sbjct: 515 QGLHTAFLRLGLDLTCPRARRLNVEITESMLYEAMFVSMNMCKQCGLQPFHEFENSKYAS 574 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 G D LPW+EL+ + G+ NS +A PT A + Sbjct: 575 GWLHFD----------GFPTCSYLNLPWEELRDDICQYGLYNSQFLAFMPTVASAQVTEC 624 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKYHDGSI-GNI 834 S+ P + N++ K +SG+ N L++EL++ +E +I L+ + S+ Sbjct: 625 SEGFSPVFTNMFSKVTISGETLRPNLELMDELRKLYPHEEDRSRIIQQLEKNQWSVLRTF 684 Query: 835 ERIPDDLKKI-HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-----PSGKKLDFI 888 + TAFE L++ R +IDQ+QS++L+++E S + + Sbjct: 685 GCLNARHPLYKFKTAFEYSQADLVDMCVDRAPFIDQSQSMSLFIEERPNGAVSAATIMNL 744 Query: 889 YRQAWLMGLKT-TYYLRSRSATSVEKST 915 +A+ GLKT YY + R AT+ T Sbjct: 745 LVRAYKGGLKTGMYYCKIRKATNSGLFT 772 >gi|297570726|ref|YP_003696500.1| ribonucleoside-diphosphate reductase, subunit alpha [Arcanobacterium haemolyticum DSM 20595] gi|296931073|gb|ADH91881.1| ribonucleoside-diphosphate reductase, alpha subunit [Arcanobacterium haemolyticum DSM 20595] Length = 716 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 177/678 (26%), Positives = 287/678 (42%), Gaps = 62/678 (9%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E I EG + ++ D D+ L + +LG Y Y L +G Sbjct: 65 EKLDYLITEGYYEPKVFDAYSDDDVKALYKQAYAHKFRFPTFLGAFKYYTSYTLKTFDGK 124 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370 R E + + VA+ LA + A + + + F +TPT N+G + +L S Sbjct: 125 RYLERFEDRVVVVALTLAAG---NVELAKNLVDEILTGRFQPATPTFLNAGKKARGELVS 181 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL V D++ I + L+K GG+ + + +R LGA I +S GV P +K+ Sbjct: 182 CFLLRVEDNMESISRGINSALQLSKRGGGVALNLSNLRELGAPIKRIENQSSGVNPVMKL 241 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 242 LEDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 301 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548 + +NA LFSP D+ +YG F E YE D I+ + I+A ++ Sbjct: 302 ELAKKNADMYLFSP---YDVERVYGVPFTEISVTEKYEEMVDDRRIRKTK-INARQFFQT 357 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCN 601 + + FE+G+P+I ++D N +P G + SNLC+EI N+ V Sbjct: 358 LAEIQFESGYPYIVYEDTVNRANPI--DGRITMSNLCSEILQVSEPSRYNADLSYEHVGK 415 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660 S NL + D T+ TA+R L V D N + ++ N AIGLG Sbjct: 416 DISCNLGSLNIAKTMDSPDFGQTVETAIRALTAVSDQTNIAAVPSIERGNDMSHAIGLGQ 475 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 M L I Y S EA++ + +++HAI +S+ +A+ERG + F+ S + G Sbjct: 476 MNLHGYLGREKIFYGSDEALDFTNIYFYTVAYHAIRSSMLIAKERGVRFEGFERSAYADG 535 Query: 720 VFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + I ++ + W L+ V GM N N A+ PT +I+ Sbjct: 536 SYFAKYIEREWAPETARVRELFANVHIPTVADWVALRDAVAAHGMYNQNLQAVPPTGSIS 595 Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ G ++L N+ Sbjct: 596 YINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAYLTND----------------------- 632 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 K+ + A+EI P +I++ + + +DQ SL L+ + + + ++ Y Sbjct: 633 --------NKEYYQDAYEIGPKAIIDTYAAATQHVDQGLSLTLFYPDTVTTRDVNKSYIY 684 Query: 892 AWLMGLKTTYYLRSRSAT 909 AW G+K+ YY+R R A Sbjct: 685 AWRKGIKSLYYMRIRQAA 702 >gi|238801852|ref|YP_002922902.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria phage WV8] gi|216263065|gb|ACJ71933.1| ribonucleoside triphosphate reductase, alpha chain [Enterobacteria phage WV8] Length = 723 Score = 317 bits (813), Expect = 4e-84, Method: Composition-based stats. Identities = 162/777 (20%), Positives = 294/777 (37%), Gaps = 78/777 (10%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 I +GT++SF+ +RL A + + V E K +Y+G + ++ A+I Sbjct: 4 TIKKSNGTVVSFDPERLNKWASWADK--RGIIWSEVTMEAMKRVYEGCTTKEMHQAMIDV 61 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 +E Y+ + R LL + +E K P T F + +E Sbjct: 62 CVDKQTQE--YSDMAGRLLLGIIYKEAFGGFTKVPTLVT-----------FVKNMERAGL 108 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMR 323 + +L YL + + +D ++ Y L+ D+Y + G E PQ FM Sbjct: 109 WEKMD--YSQEELEYLQGYIVHSKDISYGYAVLKQFRDKYGIRDIKTGRLFESPQFMFMG 166 Query: 324 VAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 +AM + + + ++ Y LS TP L +SC L D Sbjct: 167 MAMKAFEKQPKHRRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYASCCLIKANDTAE 226 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 + A + + G+G R +G I + G +P+ K+ + A N+ Sbjct: 227 SLGIAAKVAYDMTTKQAGIGM-LMETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEA-NKQ 284 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R G+ + +E+ L L+ T +R ++M+ + D F + V + W L Sbjct: 285 KSRGGSANNFYTALDPQIEDLLRLKHPTTVPSKRINEMDYSFGTNDYFWQCVQYDTDWLL 344 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 FS + L+D++ + A +K R++ A + + + + TG + Sbjct: 345 FSYKDAPKLYDMFYTASADEFAMAVGHAVHSGVK-HRRVKAREIAKLFIQQRYATGRVYP 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----------GSINLLAHF 611 F + N +P + SNLC EI L E ++ LA Sbjct: 404 FFTNNANTHTPF--KEPLKMSNLCMEIVLPVYGFEKETDLYRDDAVKEDGEVALCFLASL 461 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLH 671 + D+ A A+ ++D+VID+ + + R++G+GL L + Sbjct: 462 VAGRISEDEYADVAYYALAMVDSVIDLMDYPYPSMRNHVQKRRSVGIGLTNVAHYLAKNY 521 Query: 672 IPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAE 731 + Y+S E E S++ AS+ LA+ERG K + + +G P + + Sbjct: 522 VNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERGVPEYMKFTKYPEGWVPPKTANKKID 581 Query: 732 VRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + R WD+L +R+K G+RNS A P + + + + P + Sbjct: 582 EK----HDAKLRYDWDDLAQRIKENGGIRNSVLEAYMPNESSSLATNTTNGLYPIRDFIL 637 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 K + +G+ + ++LK ++ A++ Sbjct: 638 TKKSATGNVLFIVPDY--------------------------------EELKYVYEIAWD 665 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLD-----FIYRQAWLMGLKTTYY 902 ID +I+ + QK+ QA S + Y+D KK+ A +G+KT YY Sbjct: 666 IDTFDMIDCYAIAQKFTGQAISSDFYVDYAKSKKVSLAQALKYMIYANSVGMKTMYY 722 >gi|257464835|ref|ZP_05629206.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor 202] gi|257450495|gb|EEV24538.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor 202] Length = 554 Score = 317 bits (813), Expect = 4e-84, Method: Composition-based stats. Identities = 159/581 (27%), Positives = 249/581 (42%), Gaps = 94/581 (16%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGFAEKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSGYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGREWLESMKAGDPYK--------------- 209 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L SSS+E+ VC L S+NLL D ++ + V Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +A K HRA+GLG++G+ S L +IP+ S EA++ + + + Sbjct: 303 FIEKSKEIPFLHRATKFAIRHRALGLGVLGWHSYLQANNIPFDSFEAMQKNNLIFKTLQE 362 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 + AS ELAQ G KG Sbjct: 363 KTLKASQELAQRFGEPELLKG--------------------------------------- 383 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ M+IAPT + + I G VS S++P N YVK N FL LK Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLK 440 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L E + + ++DGS+ ++E++ + K + T EI + +I+ A++RQK+IDQ Q Sbjct: 441 EKGLDKEEIWESILHNDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAAQRQKYIDQGQ 500 Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 S+NL + + + L+ +Y A +GLK+ YY S SA V Sbjct: 501 SINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541 >gi|255327221|ref|ZP_05368296.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia mucilaginosa ATCC 25296] gi|255295839|gb|EET75181.1| ribonucleoside-diphosphate reductase, alpha subunit [Rothia mucilaginosa ATCC 25296] Length = 726 Score = 317 bits (813), Expect = 4e-84, Method: Composition-based stats. Identities = 175/743 (23%), Positives = 300/743 (40%), Gaps = 76/743 (10%) Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ++ + G+S +L L L ++ R + + + Sbjct: 19 KSVPEKFKGMSYHELNALL-----NLYDENGQIQFDADRQAARQYFLQ-----HVNNNTV 68 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 H+++ E IE L + + L + +LG Y Sbjct: 69 FFHDLE----EKIEYLIENQYYEPELFDKYNFQFIKNLFKRAYAVKFRFPTFLGAFKFYT 124 Query: 304 RYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L +G R E + RV M L EK A + + + S F +TPT N+ Sbjct: 125 SYALKTFDGQRYLERFED---RVCMVALLLAEGNEKLAEDIVDEIISGRFQPATPTFLNA 181 Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 G + +L SCFL + D++ I ++ L+K GG+ T +R GA I + Sbjct: 182 GKKQRGELVSCFLLRMEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQ 241 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 242 SSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKIRIKTLS 301 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFR 538 IPD+ + +N LFSP +V ++ + Y A + K Sbjct: 302 LGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDARITKSK--- 358 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSS 594 I+A ++ + + FE+G+P++ F+D N +P G + SNLC+EI + Sbjct: 359 -INAREFFQTIAEIQFESGYPYVMFEDTVNRANPI--AGKIIMSNLCSEILQVSEPSTYH 415 Query: 595 EETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650 + +G S NL + D D T+ TA+R L +V D + ++ ++ N Sbjct: 416 ADLGYETVGKDISCNLGSLNIALTMDGDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGN 475 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709 A+GLG M L H+ Y S EA++ + +++HAI AS+++A+ER + Sbjct: 476 GMSHAVGLGQMNLHGYLAREHVYYGSEEALDFTNMYFYTVAYHAIRASMQIAKERGQRFE 535 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763 F+ S + G F I + E + +R W +L V GM N N Sbjct: 536 GFENSKYASGEFFAKYIEKEWAPQTERTRELFAKHHIPTREEWIQLAADVAQYGMYNQNL 595 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I G + SI P + ++ G ++ N Sbjct: 596 QAVPPTGSISYINGSTSSIHPIASKIEIRKEGKLGRVYYPAPYMTN-------------- 641 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 + + + ++EI +I++ + + +DQ SL L+ + + Sbjct: 642 -----------------ENLEYYQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIR 707 >gi|88705203|ref|ZP_01102914.1| Ribonucleotide reductase large subunit [Congregibacter litoralis KT71] gi|88700293|gb|EAQ97401.1| Ribonucleotide reductase large subunit [Congregibacter litoralis KT71] Length = 715 Score = 317 bits (813), Expect = 5e-84, Method: Composition-based stats. Identities = 144/624 (23%), Positives = 245/624 (39%), Gaps = 60/624 (9%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-T 375 F RVA LA ET + E + + + N+G + +C ++ Sbjct: 49 FKRVAAALAKVETSDHEDWKEKFEWALRNGATPAGRIMSNAGAEKYKPSTSTINCTVSGP 108 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D + GI A E + K G+G +++ +R GA++ G ++ G + F+++ + T Sbjct: 109 ISDSMEGILQANLEAGLTLKAGCGIGYEFSTLRPSGANVAGAGAETSGPLSFMEIFDATC 168 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ G R+GA + H DV EF+ ++ G N + I D FM+ V Sbjct: 169 KTVSSAGGRRGAQMGTFDVSHPDVFEFIRAKRTDG----MLRQFNLSLLITDEFMEAVKA 224 Query: 496 NAGWTLFSPDEVSDLHDLY---------GKEFEIAYENYERQADRGEIKVFRKISAVALW 546 W L P + +L D K F I + K++ + A LW Sbjct: 225 EGDWPLVFPIKADNLEDAEKKAGSRGILWKYFPITDGYLSNEVGEVACKIYNVVKARELW 284 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +++++ ++ P D N+ + + S+N C E L C LGS+N Sbjct: 285 DEVMSLTYDYAEPGFILIDKYNVMNNNWFCENIRSTNPCGEQGLPYY----GSCLLGSVN 340 Query: 607 LLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + FD+DK R++DNV++IN + + + T R G+G + Sbjct: 341 LTRFIVSPFTDRAAFDWDKFREVTAIFTRMMDNVVEINGLPLPEQVEEITTKRRHGIGYL 400 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G SA+ L+ + Y S EAV D ++ +ELA+E+GA + G Sbjct: 401 GLGSAVTLMGMRYGSEEAVAFTDRVSRELAVVGWKVGLELAKEKGAAPILDKNYDVTGEM 460 Query: 722 -------PIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAP 768 D L +V + M R SR +L ++ G R ++ +IAP Sbjct: 461 LNARPEMIADGFKLGDKVSGRVLMARYSRYMQTIAEVEPQLVAEIEQHGARFTHHSSIAP 520 Query: 769 TATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 T TI + S I+PS+ + Y+++ + K+ E +L Sbjct: 521 TGTIAFSFANNSSNGIEPSFAHSYMRNI------------IKAGKKTKQQTEVQSFELLA 568 Query: 827 HDGSIGN-----IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 + I P+ L T +I P ++ + QKWID + S + + E Sbjct: 569 YRHLINPEADPYATEGPNKLPDYFITTNDISPKEHVDMQAASQKWIDSSISKTVNVPTEI 628 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904 +Y A+ GLK R Sbjct: 629 PYDSFKDVYMYAYERGLKGCTTFR 652 >gi|125541523|gb|EAY87918.1| hypothetical protein OsI_09340 [Oryza sativa Indica Group] Length = 676 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 161/572 (28%), Positives = 263/572 (45%), Gaps = 35/572 (6%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL--QDVSSKIVLSETYKNMYDGLSESDLETAL 202 + ++ DG + + ++ ++ GL + +V + +Y G++ S L Sbjct: 1 MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ + P+YA + AR + L + + + + + H I + Sbjct: 61 AETAAAMTASHPDYASLAARIAISNLHKTTMKSFSETIKVMYMH--YDERSGLLAPLIAD 118 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFM 322 V ++ + L +++ Y+RDF ++Y G + L Y L + G +E PQ M Sbjct: 119 DVYEIIM------KNTTRLDSEIIYDRDFDYDYFGFKTLERSYLLKVVGKVVERPQHMLM 172 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD-LY 381 RV++G+ + + A++ Y+++S F ++PTLFN+GT PQLSSCFL + DD + Sbjct: 173 RVSIGIH---KDDIESAIKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIE 229 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 GI+ L E A ++K +GG+G +R G++I GTNG S G++P L+V NDTA V+QG Sbjct: 230 GIYDTLSECATISKCAGGIGLSIHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289 Query: 442 G-KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G KRKGA YLE WH D+ EFLDLRKN G + R D+ A WIPDLFM+RV N W+ Sbjct: 290 GGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNENWS 349 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LF P+E L D +G EF+ Y+ YER E K + +SA ALW +L ETG P+ Sbjct: 350 LFCPNEAPGLADCWGDEFQNLYKKYER-----EGKAKKVVSAQALWFDILKAQIETGTPY 404 Query: 561 ITFK----DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQF 616 + +K + + H + E + S + ++ ++++ Sbjct: 405 MLYKAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVPSDRW 464 Query: 617 DYDKLASTI-RTAVRVLDNVIDIN----------CHTIEKAKKSNHTHRAIGLGLMGFQS 665 ++ L I + VR + + E + ++ R + + Sbjct: 465 NWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 524 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISA 697 L V E S IS Sbjct: 525 HLLHDLTEMGIWSPVLKNKIVYEDGSVQKISE 556 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 89/284 (31%), Positives = 150/284 (52%), Gaps = 11/284 (3%) Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 PY +A ++ + E I +HA+ AS E+A + G Y ++ GS +G+ D ++ Sbjct: 401 GTPYMLYKAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNVVP 460 Query: 731 EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R W +L++ + +G+RNS +A PTA+ + I G ++ +P N+Y Sbjct: 461 SDR----------WNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 510 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +SG+F VVN L+++L + +W + + + Y DGS+ I IPDDLK I+ T +E Sbjct: 511 SRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWE 570 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKT-TYYLRSRSAT 909 I +++ A R +IDQ+QSLN+++D+P+ KL ++ AW GLKT YYLR+R+A Sbjct: 571 IKQKTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAA 630 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 K T+ K + + + + S + EC C Sbjct: 631 DAIKFTVDTTLLKDKQHNAEEEDVQSKMAEVVCSLNNRDECLAC 674 >gi|306836785|ref|ZP_07469745.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium accolens ATCC 49726] gi|304567331|gb|EFM42936.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium accolens ATCC 49726] Length = 720 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 175/742 (23%), Positives = 305/742 (41%), Gaps = 72/742 (9%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH-----EMQCLY 252 + T L + + +E +L + K + A +Y Sbjct: 1 MSTQLGKTVAEPVSQEEQLDYHALNAMLNLYDGDGKIQFDKDREAANQFFLQHVNQNTVY 60 Query: 253 PEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYF----L 307 I+ V+ + ++++ +D ++ + K + F + Y Y Sbjct: 61 FHDLEEKIDYLVRNKYYDPAVIEAYDFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLK 120 Query: 308 HINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 +G R E + RV+M + A + + + F +TPT N+G + Sbjct: 121 TFDGRRYLERFED---RVSMTALFLGDGDGELAERLVDEIMTGRFQPATPTFLNAGKQQR 177 Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +L SCFL + D++ I ++ L+K GG+ + +R GA I +S GVI Sbjct: 178 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVI 237 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ I Sbjct: 238 PVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVI 297 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAV 543 PD+ + N LFSP D+ +YGK F E+YE + I+ +KI+A Sbjct: 298 PDITFELAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINAR 353 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------- 596 ++ + + FE+G+P+I ++D N R+ ++ SNLC+EI +S E Sbjct: 354 HFFQTVAELQFESGYPYIMYEDTVN-RANPVKTSRINMSNLCSEILQVNSPSELNADLSY 412 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 V N S NL + D + T+ TA+R L +V D + ++ +K N A Sbjct: 413 DQVGNDISCNLGSLNIAMTMDSPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHA 472 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L HI Y S E ++ + I + A+ AS ++A+ER ++ F S Sbjct: 473 IGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPES 532 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAI 766 + G F P + +V+ + + W ELK+ V G+ N N A+ Sbjct: 533 DYASGEFFDSYDPAEFQPRTEKVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAV 592 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G + + N+ Sbjct: 593 PPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAAHMDND---------------- 636 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++EI ++++ + K++DQ SL L+ + + + Sbjct: 637 ---------------NLEYFKDSYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRD 681 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 ++ AW G+KT YY+R R Sbjct: 682 VNKAQIYAWRKGIKTLYYIRVR 703 >gi|302595802|sp|P0CG99|RIR1A_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 1; AltName: Full=Ribonucleotide reductase R1 subunit 1 gi|302595803|sp|P0CH00|RIR1B_MYCS2 RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha 2; AltName: Full=Ribonucleotide reductase R1 subunit 2 Length = 722 Score = 317 bits (812), Expect = 6e-84, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E IE R + + + L + ++ +LG Y Y L +G Sbjct: 68 DEKLDYLIENEYYEREVLDQYSRDFIKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 127 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + + A + + + F +TPT NSG + + Sbjct: 128 KRYLERFEDRVVMVALTLAAGD---TELAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPV 184 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K Sbjct: 185 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMK 244 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 304 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I+A ++ Sbjct: 305 FELAKKNEDMYLFSP---YDVERVYGVPFADVSVTEKYYEMVDDARIRKTKINAREFFQT 361 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 + + FE+G+P+I F+D N G + SNLC+EI S+ E Sbjct: 362 LAELQFESGYPYIMFEDTVNR--SNPIAGKITHSNLCSEILQVSTPSEFNDDLSYAKVGK 419 Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 420 DISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 474 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + FHA+ AS ++A ERG + F+ S Sbjct: 475 IGLGQMNLHGYLARERIYYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGTHFKGFEKS 534 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + ++ ++ W +LK+ V+ G+ N N A+ Sbjct: 535 KYASGEFFDKYTDQVWEPKTDKVRRLFADADIHIPTQDDWKQLKESVQKHGIYNQNLQAV 594 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 595 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYMTND---------------- 638 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 639 ---------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 683 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 684 VNKAQIYAWRKGIKTLYYIR 703 >gi|296140661|ref|YP_003647904.1| ribonucleoside-diphosphate reductase, subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296028795|gb|ADG79565.1| ribonucleoside-diphosphate reductase, alpha subunit [Tsukamurella paurometabola DSM 20162] Length = 727 Score = 317 bits (812), Expect = 6e-84, Method: Composition-based stats. Identities = 171/742 (23%), Positives = 296/742 (39%), Gaps = 89/742 (11%) Query: 195 ESDLETALIFSSRTLIEKEPNYAK----VTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 S+L+ + + L +++ N AR + + + +K + Sbjct: 24 HSELDFHALNAMLNLYDRDGNIQFDKDREAARQYFLQHVNQNTVFFHNLDEKLDY----- 78 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 +EE + + + L + ++ +LG Y Y L Sbjct: 79 --------LVEENYYEPEVLDKYSRAFVKNLFDAAYAKKFRFPTFLGAFKYYTSYTLKTF 130 Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 +G R E + RV M EK A + + + F +TPT NSG + + Sbjct: 131 DGKRYLERFED---RVCMVALTLADGDEKLATSLVDEIIAGRFQPATPTFLNSGKKQRGE 187 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SCFL + D++ I ++ L+K GG+ + +R GA I +S GVIP Sbjct: 188 PVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPI 247 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD Sbjct: 248 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPD 307 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546 + + N LFSP D+ +YG F + + ++ + I+A + Sbjct: 308 ITFELAKNNDDMYLFSP---YDVERVYGVPFADVNVTEKYHEMVDDSRIRKTKINAREFF 364 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594 + + + FE+G+P+I ++D N +P G + SNLC+EI + Sbjct: 365 QTLAELQFESGYPYIMYEDTVNRANPI--AGKITHSNLCSEILQVSTPSTYNDDLSYAEI 422 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTH 653 + CNLGS+N+ D +TI TA+R L V D ++ + N+ Sbjct: 423 GKDISCNLGSLNIAKT-----MDSPDFGATIETAIRGLTAVSDQTAITSVPSIEHGNNLS 477 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712 AIGLG M L + Y S E V+ + + FHAI AS +A+ER ++ F+ Sbjct: 478 HAIGLGQMNLHGYLARERVFYGSEEGVDFTNIYFYTVLFHAIRASNAIARERGQSFGGFE 537 Query: 713 GSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 S + G F I + + + ++ W LK V+ G+ N N Sbjct: 538 DSKYASGEFFDKYIDQEWKPATDKVIGLFADSEIRIPTQDDWRALKADVQQYGLYNQNLQ 597 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823 A+ PT +I+ I + SI P + ++ G ++ N+ Sbjct: 598 AVPPTGSISYINHSTSSIHPVAAKIEIRKEGKIGRVYYPAPYMDND-------------- 643 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + + A+EI +I++ + + +DQ SL L+ + + Sbjct: 644 -----------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATT 686 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 687 RDVNRAQIYAWRKGIKTLYYIR 708 >gi|254420375|ref|ZP_05034099.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Brevundimonas sp. BAL3] gi|196186552|gb|EDX81528.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Brevundimonas sp. BAL3] Length = 753 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 160/646 (24%), Positives = 249/646 (38%), Gaps = 82/646 (12%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F G+ +A + RVA LA E + + F L ++ F+ + L Sbjct: 15 KYRFRPHEGTGDATVEATWDRVAAALAEAEPTKTRARWRARFRETLDAYRFLPAGRILAG 74 Query: 361 SGTRHP-QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ V PDDL GIF L+E A+ + GG+G D++ VR GA + G Sbjct: 75 AGTGRAVTLFNCFVMGVVPDDLDGIFQHLREAAVTLQQGGGVGMDFSTVRPSGALVRGVG 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 ++ G + F+ V + + G+R+GA+ L H D+E F+D ++ D R + Sbjct: 135 AEASGPLSFMDVWDSMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR----DAVRFRN 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + +PD FM + +A W L + ++ R Sbjct: 191 FNLSVLVPDAFMAALDADADWPLVF-----------------------------DGEIRR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + H V+ +SN C E L Sbjct: 222 TVRATDLWTRLMQATYDAAEPGVIFIDRVNAANNLAHCEVIAASNPCGEQMLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL + D KLA RTAVR+LDNVIDI+ + + Sbjct: 278 ACLLGSINLARLVSAPFEPDAALDEQKLADLTRTAVRMLDNVIDISRFPLPAQEAEARAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +GLG+ G AL Y AV + + I A AS ELA E+GA+ + Sbjct: 338 RRLGLGVTGLADALIFCGARYGEDRAVALTGRWLGLIRREAYRASAELAAEKGAFPLY-- 395 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 L + L + ++ + G+RN +IAPT T + Sbjct: 396 ------------------DPAMLQRPNLASLDAET-RELIGLHGLRNGCLTSIAPTGTTS 436 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + G S I+P + Y + M D T + + LW K G Sbjct: 437 LLAGNVSSGIEPVFAFAYTRKVMQPDGTRREEAVED--YALALW--------KTLKGPDA 486 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 ++ P D +A + P + + Q ID + S + E + +YRQ Sbjct: 487 PLDSAPGD---AFVSAQTLTPEHHLRMQAAAQAQIDSSISKTINCPENIDFEAFSDVYRQ 543 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + MG K R + T S A + Sbjct: 544 GYRMGCKGLTTYRPNAITGSVLSVESPASVPAAAPSSDVDPLTPRP 589 >gi|94985874|ref|YP_605238.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus geothermalis DSM 11300] gi|94556155|gb|ABF46069.1| Ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus geothermalis DSM 11300] Length = 649 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 161/679 (23%), Positives = 274/679 (40%), Gaps = 63/679 (9%) Query: 260 IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMP 317 +E G + ++ + N R ++G Q Y Y +E Sbjct: 2 VERGFWDGEMLARYRPEEVKAVFNRAYSHRFRFQSFMGAQKFYAEYATKTPDGSRYLERY 61 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT-T 375 + R++M + + A+ + L F+ +TPTL NSG + +L+SCFL Sbjct: 62 ED---RMSMVALARAGGNAELALTLVDHLVRQTFVPATPTLMNSGKANTGRLTSCFLLQD 118 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 D L I A L+K GG+G D + +R G + G ++G K+ + Sbjct: 119 CTDSLDSIMKTQHFAADLSKNGGGVGIDLSNLRARGESLRHLQGVTKGAAAVAKLFDVLF 178 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +Q G+R+GA L H D +E L +K D+ R ++ IPD+FM+ V Sbjct: 179 RYADQAGQRQGAAVVNLNVMHPDFQELLAGKKIATDEDARLKTLSICAVIPDVFMQAVRD 238 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLF 554 + P G+ F + E R++SA L +++ Sbjct: 239 DKDVYQVYPR---SYEQATGRIFTDIDWDTEYASIVENPNIRKRRVSARQLLQEIALTQG 295 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC---------NLGSI 605 E+G+P++ F N +P +VG V +NLC+EI + S Sbjct: 296 ESGYPYLLFTGNANRANPVPNVGTVKMTNLCSEIMQPTLPSSFHPYGEEARDEIGLDVSC 355 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL + N L +R A+ +LD+V N + ++N R+IGLG MG Sbjct: 356 NLASLHIGNALKSGDLGGVVRAAISMLDDVAQSTNITEVPAVARANREMRSIGLGAMGLH 415 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVF-- 721 L I Y SPEA+ D E + FHA AS+ELA++ G ++ F+GS + G + Sbjct: 416 GHLAEHGIAYGSPEALAFCDLFFEAVHFHARRASMELARDTGFVFAGFQGSRYQSGEYFA 475 Query: 722 PIDSIGLLAEVRDELAMNRT-------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 P + +R W +L ++ G+ +S+ MAIAPT +I+ Sbjct: 476 PYTEREREPAQDLAPEVRAALQGAWLPTREDWRQLVSDIQRYGLAHSHVMAIAPTGSISY 535 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + + S+ P + + +++ G + Sbjct: 536 VANATASVMPITERVETRTSGKGKTIYP-------------------------------M 564 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAW 893 + + + + A+++D +I++ + Q+ +DQ S L++ + L +Y A+ Sbjct: 565 PGLNEQTEWFYEEAYDMDMRRVIDTVATIQRHVDQGISCTLFVRSNVTTADLARLYISAY 624 Query: 894 LMGLKTTYYLRSRSATSVE 912 GLK+ YYLR R AT E Sbjct: 625 RKGLKSLYYLRQRRATVQE 643 >gi|159184147|ref|NP_353104.2| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium tumefaciens str. C58] gi|159139482|gb|AAK85889.2| ribonucleoside-diphosphate reductase 2 alpha chain [Agrobacterium tumefaciens str. C58] Length = 693 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 176/713 (24%), Positives = 293/713 (41%), Gaps = 79/713 (11%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + + Y + +L + +F Sbjct: 16 DRLAARQYFLQHVNQNTVFFHNLREKLDYLVTEGYY------------EQEVLDQYSFNF 63 Query: 277 DLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKET 333 Y R F F +LG Y Y L +G R E + RV M Sbjct: 64 VRDLYDEA--YSRKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALALAR 118 Query: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAM 392 E+ A + + + S F +TPT N+G + +L SCFL V D++ I ++ Sbjct: 119 GDEQLARDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSALQ 178 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 179 LSKRGGGVALSLTNIREFGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYL 238 Query: 453 ETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH- 511 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ Sbjct: 239 HAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYG 298 Query: 512 -DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 L Y + + +KI A ++ + + FE+G+P+I F+D N Sbjct: 299 VPLTEISVTEKYHEMVADSRIRK----KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRA 354 Query: 571 SPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623 +P G + SNLC+EI N+ + + S NL + + D Sbjct: 355 NPV--AGRISMSNLCSEILQVSEASEFNADLSYSHMGKDISCNLGSLNIASAMDSADFGK 412 Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI T++R L V D+ + ++ +K N AIGLG M L I Y S E ++ Sbjct: 413 TIETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEEGIDF 472 Query: 683 ADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL 736 + +++HAI AS LA ER ++ F+ S + G + + + +VRD Sbjct: 473 TNIYFYTVTYHAIRASNRLAVERGQSFKGFENSKYASGDYFDKYTDREWLPATEKVRDLF 532 Query: 737 AMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + W LK+ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 533 EKAGIAIPTQEDWTALKQDVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK 592 Query: 794 NMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G S+L N+ + + A+EI Sbjct: 593 EGKIGRVYYPASYLSND-------------------------------NLEYYQDAYEIG 621 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 622 PEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRRGIKTIYYIR 674 >gi|222081802|ref|YP_002541167.1| ribonucleotide-diphosphate reductase subunit alpha [Agrobacterium radiobacter K84] gi|221726481|gb|ACM29570.1| ribonucleoside-diphosphate reductase, alpha subunit [Agrobacterium radiobacter K84] Length = 717 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 179/739 (24%), Positives = 308/739 (41%), Gaps = 81/739 (10%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 +E+ L+ + + L +++ + ++ A+ + + + +K + + Sbjct: 13 TETQLDYHALNAMLNLYDEDGKIQLDRDRLAAKQYFLQHVNQNTVFFHHLREKLDYLVTE 72 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308 Y + +L + +F + Y + F F +LG Y Y L Sbjct: 73 GYY------------EREVLDQYSFNFVRDLFDHA--YAKKFRFPTFLGAFKYYTSYTLK 118 Query: 309 -INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 +G R E + VA+ LA E A + + + S F +TPT N+G + Sbjct: 119 TFDGKRYLERYEDRICMVALTLAQG---NESLARDMVDEIISGRFQPATPTFLNAGKKQR 175 Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +L SCFL V D++ I ++ L+K GG+ T +R GA I +S G+I Sbjct: 176 GELVSCFLMRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKHIENQSSGII 235 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ + Sbjct: 236 PVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVV 295 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 PD+ + N LFSP +V ++ Y + +KI A Sbjct: 296 PDITFELAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADNHIRK----KKIKAR 351 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSEETAV 599 ++ + + FE+G+P+I F+D N +P G + SNLC+EI + ++ + Sbjct: 352 DFFQVIAEIQFESGYPYIMFEDTVNRANPI--AGRITMSNLCSEILQVSEASTYRDDLSY 409 Query: 600 CNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 ++G S NL + D D TI TA+R L V D+ ++ +K N A Sbjct: 410 EHMGKDISCNLGSLNIAAAMDSDNFGKTIETAIRALTAVSDMSRISSVPSIEKGNDESHA 469 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y S E V+ + +++HAI AS LA ER ++ F+ S Sbjct: 470 IGLGQMNLHGYLARERILYGSEEGVDFTNIYFYTVTYHAIRASNRLAAERERSFKGFENS 529 Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + + + ++ +R W ELK+ V T G+ N N A+ Sbjct: 530 KYASGDYFDKYTEQEWKPATERVRTLFETAGIDIPTREDWQELKQAVMTSGLYNQNLQAV 589 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ E MI + Y Sbjct: 590 PPTGSISYINHSTSSIHPIVSKIEIRK------------------------EGMIGRVYY 625 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + +D + A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 626 ------PAAFMTNDNLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 679 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 680 NKAQIYAWKKGIKTIYYIR 698 >gi|296270389|ref|YP_003653021.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobispora bispora DSM 43833] gi|296093176|gb|ADG89128.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermobispora bispora DSM 43833] Length = 938 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 129/642 (20%), Positives = 234/642 (36%), Gaps = 66/642 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385 G E + E E L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 116 GYFATEEDAEIFDHELKYALIHQIFSFNSPVWFNVGTASPQQVSACFILSVDDTMESILE 175 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 176 WYKEEGLIFKGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+ EF++ + R + + N + + Sbjct: 235 RAAKMVVLDVDHPDIVEFIESKAREEQKIRVLRDAGFDMDLGGRDIVSVQYQNANNSVRV 294 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V + L + +V ++ A L Sbjct: 295 SDEFMRAVENGGKFGLRARLT---------------------------GEVIEEVDAREL 327 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +RKM +E G P I + D N G + +SN C+E + + CNL SI Sbjct: 328 FRKMAQAAWECGDPGIQYDDTINDWHTCPESGRITASNPCSEYVH----LDNSSCNLASI 383 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL+ ++ FD + + + +D I +K ++ R +G+G Sbjct: 384 NLMKFLRDDDTFDVESFTKMVELIITAMDISITFADFPTQKIAETTRAFRQLGIGYANLG 443 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L Y S +A ++ A S ELA+ G Y ++ + Sbjct: 444 ALLMATGHAYDSDGGRALAAAITSLMTAVAYRRSAELAEVVGPYQGYQRNAEPHKRVIRK 503 Query: 725 SIGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++R AM+ + WD K + G RN+ +APT TI + + Sbjct: 504 HVAANTQLRTYEAMDSAIHAEATRQWDRCVKLGEKHGYRNAQVSLLAPTGTIGLMMDCDT 563 Query: 780 QSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836 I+P + +K G +VN + L++ DE + + ++Y G + + Sbjct: 564 TGIEPDLALVKIKKLVGGGSMKIVNQTVPRALRKLGYQDEQIEAIVEYISEHGHVVDAPG 623 Query: 837 IPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + + + A I PM + + Q ++ A S + L E + + ++ +Y Sbjct: 624 LKPEHYAVFDCAMGERAIAPMGHVRMMAAVQPFLSGAISKTVNLPESATVEDIEQVYMAG 683 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 W +GLK R S K V + + Sbjct: 684 WKLGLKALAVYRDNCKVGQPLSAAKKQPESKPEVQIVEVPRP 725 >gi|283835590|ref|ZP_06355331.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] gi|291068802|gb|EFE06911.1| ribonucleoside-diphosphate reductase, alpha subunit [Citrobacter youngae ATCC 29220] Length = 705 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 181/708 (25%), Positives = 300/708 (42%), Gaps = 64/708 (9%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K + V + + E + EG + ++ Sbjct: 20 AGRIQFDKDHQAVDAFFAAHVRPNSV--TFASQQERLEVLVSEGYYDESVLSRYDRTFVI 77 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337 L +LG Y Y L +G R E + VA+ LA + E Sbjct: 78 TLFARAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEDFEDRVTMVALTLAQGD---ET 134 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 A++ + + S F +TPT N G R +L SCFL + D++ I A+ L+K Sbjct: 135 LAMQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKR 194 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 195 GGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHH 254 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLD ++ D++ R ++ IPD+ + +NA LFSP D+ LYGK Sbjct: 255 PDILRFLDTKRENADEKIRIKTLSLGVVIPDVAFRLAKENAQMALFSP---YDVERLYGK 311 Query: 517 EF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 F +IA + E + I+A ++++ + FE+G+P+I F+D N +P Sbjct: 312 PFGDIAVSERYDELLADERVRKKYINARDFFQRLAEIQFESGYPYIMFEDTVNRANPI-- 369 Query: 576 VGVVHSSNLCTEITLNSSSEETA-------VCNLGSINLLAHFANNQFDYDKLASTIRTA 628 G ++ SNLC+EI +S+ + + S NL + + D T+ TA Sbjct: 370 AGRINMSNLCSEILQVNSASTYDDALGYTQIGHDISCNLGSLNIAHTMDSPDFGRTVETA 429 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 VR L V D+ + H++ + N AIGLG M L I Y SPE ++ + Sbjct: 430 VRGLTAVSDMSHIHSVPSIEAGNSASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYF 489 Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---M 738 I++HA++ S++LA+ER ++ F S + G + D A+VR A + Sbjct: 490 YTITWHALNTSMKLARERGKTFAGFSQSRYASGEYFSQYLQGDWQPKTAKVRALFAASGI 549 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797 +R W +L++ V G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 550 TLPTREMWAQLREDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVSKVEIRKEGKIG 609 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F+ N + ++ A+EI P +I Sbjct: 610 RVYYPAPFMTN-------------------------------ENLALYQDAYEIGPQKII 638 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ + + +DQ SL L+ + + + ++ AW G+K+ YY+R Sbjct: 639 DTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 686 >gi|118464322|ref|YP_883081.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium avium 104] gi|118165609|gb|ABK66506.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium avium 104] Length = 705 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 173/728 (23%), Positives = 295/728 (40%), Gaps = 79/728 (10%) Query: 212 KEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGV 264 E +Y + A L + ++VL Q + + E I E Sbjct: 3 DETDYHALNAMLNLYDADGKIQFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENY 62 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFM 322 R + + + L + ++ +LG Y Y L +G R E + + Sbjct: 63 YEREVLDQYSRNFVKALLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVV 122 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381 VA+ LA + A + + + F +TPT NSG + + SCFL + D++ Sbjct: 123 MVALTLAAGD---TGLAEKLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNME 179 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I ++ L+K GG+ T +R GA I +S GVIP +K+ D+ NQ Sbjct: 180 SIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQL 239 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + +N L Sbjct: 240 GARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYL 299 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPW 560 FSP D+ +YG F + + ++ + I A ++ + + FE+G+P+ Sbjct: 300 FSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPY 356 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608 I F+D N +P G + SNLC+EI + + CNLGS+N+ Sbjct: 357 IMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIA 414 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D A TI A+R L V D + ++ ++ N+ AIGLG M L Sbjct: 415 KT-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYL 469 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI 726 I Y S E ++ + + +HA+ AS +A ERG + F+ S + G F Sbjct: 470 AREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYT 529 Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + E + + ++ W LK+ V+ G+ N N A+ PT +I+ I Sbjct: 530 EQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHS 589 Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ G ++ N+ Sbjct: 590 TSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------------------- 621 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896 + + A+EI +I++ + + +DQ SL L+ + + + ++ AW G Sbjct: 622 ---NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKG 678 Query: 897 LKTTYYLR 904 +KT YY+R Sbjct: 679 IKTLYYIR 686 >gi|269217730|ref|ZP_06161584.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212665|gb|EEZ79005.1| ribonucleoside-diphosphate reductase, alpha subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 712 Score = 317 bits (811), Expect = 7e-84, Method: Composition-based stats. Identities = 178/752 (23%), Positives = 309/752 (41%), Gaps = 89/752 (11%) Query: 174 QDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVL 233 +D + N+YD + LI+ + + + AR + + Sbjct: 10 EDPNLDYHALNAKLNLYD--------------ANGLIQFDAD--RAAARQYFLQHVNKNT 53 Query: 234 TTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF 293 + +K + ++EG + + + + L ++ Sbjct: 54 VYFHDLEEKMEY-------------LVKEGYYEKEVLDQYPFDFVKSLYKAAYAKKFRFP 100 Query: 294 EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L +G+R E + VA+ LA + + +E + S F Sbjct: 101 TFLGAFKYYTSYTLKTFDGTRYLERYEDRVCMVALTLARGDQDLAVDLME---EIISGRF 157 Query: 352 MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N+G +L SCFL + D++ I + L+K GG+ + + +R L Sbjct: 158 QPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALNLSNLREL 217 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GV P +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 218 GAPIKRIQNQSSGVNPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENA 277 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D++ R ++ IPD+ + N LFSP D+ +YG F + + + Sbjct: 278 DEKIRIKTLSLGVVIPDVTFELAKNNEDMYLFSP---YDVERVYGVPFTEISVSEKYREM 334 Query: 531 RGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + ++ + KI+A A ++ + + FE+G+P+I F+D N +P G V SNLC+EI Sbjct: 335 VDDKRIRKSKINARAFFQTLSEIQFESGYPYIVFEDTVNAANPI--KGKVTMSNLCSEIL 392 Query: 590 L-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 N V S NL + D L T+ TAVR L V D+ + Sbjct: 393 QVSEASEYNPDLSYAHVGKDISCNLGSMNIAKAMDSPDLGKTVETAVRALTAVSDMTDIR 452 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 ++ ++ N +IGLG M L + Y S E ++ + + FHAI AS+E+ Sbjct: 453 SVPSIERGNAMSHSIGLGQMNLHGYLGRERVFYGSEEGLDFTNMYFYTVLFHAIRASMEI 512 Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVK 754 A+ER ++ F+ S + G F + E ++ + W L++ V+ Sbjct: 513 ARERGERFAGFEDSTYATGEFFDKYVEGAWEPTTPKVRELFANVHIPTSEDWAALREDVR 572 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQR 813 GM N N A+ PT +I+ I + SI P + ++ G ++ N+ Sbjct: 573 RYGMYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPYMTND---- 628 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + + A+EI P +I++ + + +DQ SL Sbjct: 629 ---------------------------NLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSL 661 Query: 874 NLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 L+ + + + ++ Y AW G+KT YY+R Sbjct: 662 TLFYPDTVTTRDVNRNYIYAWRKGIKTLYYMR 693 >gi|326803226|ref|YP_004321044.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650452|gb|AEA00635.1| ribonucleoside-diphosphate reductase, alpha subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 732 Score = 317 bits (811), Expect = 8e-84, Method: Composition-based stats. Identities = 180/787 (22%), Positives = 323/787 (41%), Gaps = 83/787 (10%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ E L ++ T + + A + +E + + +A L Sbjct: 1 MTFKQEENYLSLNALTRFKDQ-------AGHYNFQADKEAVAVYMRDYIQAKTKTFANLD 53 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEY-LGLQILYDRYFLHING 311 + E + + + + + ++DFAF +G Y Y L + Sbjct: 54 SK-LDYLFENNYYEKEVFDQYSKDFIHEIYQWAD-DQDFAFPNLIGAMKFYSAYALKTDD 111 Query: 312 SRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 E + RV + A + + S F +TPT N+ + + Sbjct: 112 KAYYLETYED---RVIANALFLANGDQDLAKDLAADILSNRFQPATPTFLNAAKKRRGEY 168 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L V D++ I ++ + L+K GG+ T +R A I G ++ GV+P + Sbjct: 169 ISCYLLRVEDNMESIARSIATSLQLSKRGGGVALCLTNLRETTAPIKGMANQASGVVPVM 228 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G+R+GA YL H D+ +FLD ++ D++ R ++ IPD+ Sbjct: 229 KLLEDSFSYANQLGQRQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLSLGVVIPDI 288 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + +N LFSP ++ ++ + I + E A+ K F ISA L++ Sbjct: 289 TFQLAKENKDMALFSPYDIKKVYGKAMSDISITEKYDELLANPAIHKDF--ISARKLFQV 346 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596 + + FE+G+P++ F+D N R+P + G + SNLC+EIT S+ E Sbjct: 347 IAELHFESGYPYLMFEDTVNSRNPHKKKGRIVMSNLCSEITQVSTPSSFNEDLSFRTIGE 406 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D+ L S A+ + D+ + KK N + A+ Sbjct: 407 DICCNLGSLNIAKAMDQ-APDFGHLVSHAIQALDRISRKSDLE--SAPSIKKGNQANHAV 463 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG M L HI Y S EAV+ D +++HA +S L ++ G ++ F S + Sbjct: 464 GLGAMNLHGFLATNHIYYDSEEAVDFTDMFFYALAYHAFKSSHALVKQHGPFAGFAESEY 523 Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G + + + + + + S+ W L K ++ G+ N++ +A+AP Sbjct: 524 ADGSYFMKYTESRVQPKTERVRQLLKDYGLQLPSQEDWQALAKAIQEDGIANAHLLAVAP 583 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T +I+ + + S+ P + + V ++ Sbjct: 584 TGSISYLSSCTPSLQPVVSPVETRKEGKLGRVYVPAY----------------------- 620 Query: 829 GSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 +I +D + A+E+ P +I+ + QK +DQA SL L++ E + + L+ Sbjct: 621 -------QIDNDNYAYYQRGAYEVGPQAIIDIVAAAQKHVDQAISLTLFMSSEATTRDLN 673 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 Y A+ G T YY+R R + V + + S+ + SSC Sbjct: 674 RAYIYAYSKGCSTIYYVRVR----------QDVLAGSEHLESDELLSADPTSPDRSSCNG 723 Query: 947 DTECEVC 953 ++ECE C Sbjct: 724 NSECESC 730 >gi|227502984|ref|ZP_03933033.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|227076045|gb|EEI14008.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] Length = 720 Score = 317 bits (811), Expect = 8e-84, Method: Composition-based stats. Identities = 175/742 (23%), Positives = 306/742 (41%), Gaps = 72/742 (9%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH-----EMQCLY 252 + T L + + +E +L + K + A +Y Sbjct: 1 MSTQLGKTVAEPVSQEEQLDYHALNAMLNLYDGDGKIQFDKDREAANQFFLQHVNQNTVY 60 Query: 253 PEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQILYDRYF----L 307 I+ V+ + ++++ +D ++ + K + F + Y Y Sbjct: 61 FHDLEEKIDYLVRNKYYDPAVIEAYDFEFIKSLFKRAYSYKFRFKSFLGAYKYYTSYTLK 120 Query: 308 HINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 +G R E + RV+M + A + + + F +TPT N+G + Sbjct: 121 TFDGRRYLERFED---RVSMTALFLGDGDGELAERLVDEIMTGRFQPATPTFLNAGKQQR 177 Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +L SCFL + D++ I ++ L+K GG+ + +R GA I +S GVI Sbjct: 178 GELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVI 237 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ I Sbjct: 238 PVMKMLEDAFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIRIKTLSLGVVI 297 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAV 543 PD+ + N LFSP D+ +YGK F E+YE + I+ +KI+A Sbjct: 298 PDITFELAKNNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPRIRK-KKINAR 353 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE------- 596 ++ + + FE+G+P+I ++D N R+ ++ SNLC+EI +S+ E Sbjct: 354 HFFQTVAELQFESGYPYIMYEDTVN-RANPVKTSRINMSNLCSEILQVNSASELNADLSY 412 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 V N S NL + D + T+ TA+R L +V D + ++ +K N A Sbjct: 413 DQVGNDISCNLGSLNIAMTMDSPDFSQTVETAIRGLTSVADKTSIDSVPSVRKGNDDSHA 472 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L HI Y S E ++ + I + A+ AS ++A+ER ++ F S Sbjct: 473 IGLGQMNLHGYLGREHIKYGSEEGLDFTNAYFAAIMYAALRASNKIARERGTTFTEFPES 532 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAI 766 + G F P + +V+ + + W ELK+ V G+ N N A+ Sbjct: 533 DYASGEFFDSYDPAEFQPRTEKVKALFDASSIYTPTAEDWAELKEDVAKHGLYNRNLQAV 592 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G + + N+ Sbjct: 593 PPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAAHMDND---------------- 636 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++EI ++++ + K++DQ SL L+ + + + Sbjct: 637 ---------------NLEYFKDSYEIGYEKIVDTYAEATKYVDQGLSLTLFFKDTATTRD 681 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 ++ AW G+KT YY+R R Sbjct: 682 VNKAQIYAWRKGIKTLYYIRVR 703 >gi|156932795|ref|YP_001436711.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter sakazakii ATCC BAA-894] gi|156531049|gb|ABU75875.1| hypothetical protein ESA_00591 [Cronobacter sakazakii ATCC BAA-894] Length = 706 Score = 316 bits (810), Expect = 9e-84, Method: Composition-based stats. Identities = 172/726 (23%), Positives = 291/726 (40%), Gaps = 69/726 (9%) Query: 209 LIEKEPNYAKVTARFLLE----KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 +++ P+Y + A L +++ E A +P+ R Sbjct: 1 MLQTPPDYHALNAMLNLYDADGRIQFEKDREAVAAFMTAHVAPRSVTFPDTHARLAYLVS 60 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYL---GLQILYDRYFLH-INGSRIEMPQAF 320 + + +D ++A + F + G Y Y L +G R + F Sbjct: 61 EGYYDENVLRRYDASFVAGLFDEAHRYGFTFKTFLGAWKFYTSYTLKTFDGKRY--LEHF 118 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379 R M E A + + + S F +TPT N G + +L SCFL + D+ Sbjct: 119 PDRACMVALTLACGDETLARQILDEILSGRFQPATPTFLNCGKKQRGELVSCFLLRIEDN 178 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I A+ L+K GG+ + +R GA I +S GVIP +K+ D N Sbjct: 179 MESIGRAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYAN 238 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + NA Sbjct: 239 QLGARQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKANAQM 298 Query: 500 TLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP +V ++ Y E R ISA L++++ + FE+G Sbjct: 299 ALFSPYDVERIYGKPFGDISVSEMYSQLVED----ERIRKRYISARELFQRLAEIQFESG 354 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAH 610 +P+I F+D N +P G ++ SNLC+EI +S+ + S NL + Sbjct: 355 YPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCNLGSL 412 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D T+ AVR L V D+ + ++ + N AIGLG M L Sbjct: 413 NIAHTMDSPDFGRTVEVAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAR 472 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728 I Y SPE ++ + +++HA++ S++LA+ER + F+ S + G + + Sbjct: 473 EGIAYGSPEGLDFTNLYFYTVTWHALNTSMKLARERGERFEGFEASRYASGEYFDKYLSQ 532 Query: 729 LAEVRDELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + R +R W L+ V G+ N N A+ PT +I+ I + Sbjct: 533 IWTPRTARVAELFARAGITLPTPEMWRALRDDVMRHGLYNRNLQAVPPTGSISYINHATS 592 Query: 781 SIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + ++ G F+ N Sbjct: 593 SIHPIVSKIEIRKEGKIGRVYYPAPFMTN------------------------------- 621 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898 + ++ A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+K Sbjct: 622 ENLSLYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIK 681 Query: 899 TTYYLR 904 T YY+R Sbjct: 682 TLYYIR 687 >gi|227494220|ref|ZP_03924536.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM 15436] gi|226831954|gb|EEH64337.1| ribonucleoside-diphosphate reductase [Actinomyces coleocanis DSM 15436] Length = 718 Score = 316 bits (810), Expect = 9e-84, Method: Composition-based stats. Identities = 182/739 (24%), Positives = 304/739 (41%), Gaps = 87/739 (11%) Query: 197 DLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 DL+ + + L +KE + K AR + + + +K + + Y Sbjct: 17 DLDYHALNAQLNLYDKEGKIQFDADKKAARQYFLQHVNQNTVFFHNLEEKLNYLVSEGYY 76 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH- 308 E + +D ++ + K Y + F F +LG Y Y L Sbjct: 77 EEEV----------------LDQYDFDFIKSLFKRAYAKKFRFPTFLGAFKYYTSYTLKT 120 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HP 366 +G R E + RV+M ++ A + + + F +TPT N+G R Sbjct: 121 FDGKRYLERFED---RVSMVALYLARGNKEVAEYLVDEILAGRFQPATPTFLNAGKRARG 177 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL V D++ I + L+K GG+ + +R GA I +S G++P Sbjct: 178 ELVSCFLLRVEDNMESIARGINSALQLSKRGGGVALSLSNLREAGAPIKRIENQSSGIVP 237 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ +FLD ++ D++ R ++ IP Sbjct: 238 VMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKSLSLGVVIP 297 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVA 544 D+ + N LFSP D+ +YG F E Y + G I+ +KI+A Sbjct: 298 DITFELAKNNEDMYLFSP---YDVERVYGVPFTEISVTEKYREMVEDGRIRK-KKINARR 353 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEET 597 ++ + + FE+G+P+I F+D N G + SNLC+EI N + Sbjct: 354 FFQTIAEIQFESGYPYIVFEDTVNR--ENPIKGRITMSNLCSEILQVSEASTYNEDLTFS 411 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAI 656 V S NL + D A T+ TA+R L V D++ + ++ N AI Sbjct: 412 HVGKDISCNLGSLNIAKAVDSPDFALTVETAIRGLTAVSDLSNISSAPSIERGNRMSHAI 471 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L I Y S EA++ + +++ AI AS ++A+ER ++ F+ S Sbjct: 472 GLGQMNLHGFLARERIFYGSEEALDFTNMYFYAVTYQAIKASTKIAKERGESFHGFEESK 531 Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + I + E+ + + W +L V+ GM + N AI Sbjct: 532 YYTGEYFTKYIEGEWVPTTDRVKEIFAGSTIYLPTPQDWKDLAAEVRENGMYHQNLQAIP 591 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N Sbjct: 592 PTGSISYINYSTSSIHPIVSKIEIRKEGKIGRVYYPAPYMTN------------------ 633 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + + A+EI P +I++ + + +DQ SL L+ + S + L Sbjct: 634 -------------ENLEYYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFYPDTVSTRDL 680 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + Y AW G+KT YY+R Sbjct: 681 NKSYIYAWRKGIKTMYYMR 699 >gi|254362524|ref|ZP_04978627.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica PHL213] gi|261494147|ref|ZP_05990650.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496012|ref|ZP_05992422.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094124|gb|EDN75023.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica PHL213] gi|261308262|gb|EEY09555.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310313|gb|EEY11513.1| ribonucleoside-diphosphate reductase alpha subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 555 Score = 316 bits (810), Expect = 9e-84, Method: Composition-based stats. Identities = 158/587 (26%), Positives = 255/587 (43%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 51 EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 110 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 111 IGGGTSAYFGDIRPRGSLIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 169 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 170 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 210 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 211 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 243 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 +H+SNLCTEI L SS+EE+ VC L S+NLL FD K T L Sbjct: 244 KDKNMTIHASNLCTEIMLPSSNEESFVCCLSSMNLL------YFDEWKDTDAPETLTYFL 297 Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D V+ + +++A + HRA+GLG++G+ S L +I + S +A++ +E Sbjct: 298 DVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNEI 357 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + + + AS ELAQ G +G Sbjct: 358 FKTLQAKTLKASQELAQRFGEPEILEG--------------------------------- 384 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN+ M+IAPT + + I G VS S++P N YVK N F Sbjct: 385 ---------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPF 435 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L L+++ L E + + + +DGS+ ++E++ + K++ T EI + +I+ A++RQK Sbjct: 436 LEKLLQEKGLDTEEIWTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQK 495 Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 496 YIDQGQSINVMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 542 >gi|226305839|ref|YP_002765799.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus erythropolis PR4] gi|226184956|dbj|BAH33060.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus erythropolis PR4] Length = 727 Score = 316 bits (810), Expect = 1e-83, Method: Composition-based stats. Identities = 173/680 (25%), Positives = 288/680 (42%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +EE + + + +L + ++ +LG Y Y L +G Sbjct: 73 DEKLDYLVEENYYEPEVLDQYSRTFVKFLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 132 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA E AVE + + + F +TPT NSG + + Sbjct: 133 KRYLERFEDRVCMVALTLAAG---NEDLAVELVDEIIAGRFQPATPTFLNSGKKQRGEPV 189 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T VR GA I +S GVIP +K Sbjct: 190 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 249 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 250 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 309 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548 + +N LFSP D+ +YG F + + + ++ + KI A ++ Sbjct: 310 FELAKKNEDMYLFSP---YDVERIYGVPFSDINVSEKYYEMVDDKRIRKSKIKAREFFQT 366 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI S + Sbjct: 367 VAELQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYSKVGK 424 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI ++R L V D + +++ ++ N+ A Sbjct: 425 DISCNLGSLNIAKT-----MDSPDFAKTIEVSIRGLTAVSDQTHIYSVPSIEQGNNDSHA 479 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGS 714 IGLG M L I Y S E ++ + + FHA+ AS ++A ERG+Y F S Sbjct: 480 IGLGQMNLHGYLARERIFYGSVEGIDFTNIYFYTVLFHALRASNKIAIERGSYFKGFPES 539 Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + ++ ++ W ELK V+ G+ N N A+ Sbjct: 540 KYASGEFFDKYTDQVWEPATDKVRGLFADAKLHIPTQDDWRELKASVQKHGIYNQNLQAV 599 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G +L N+ Sbjct: 600 PPTGSISYINYSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 643 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI ++++ + + +DQ SL L+ + + + Sbjct: 644 ---------------NLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRD 688 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 689 INKAQIYAWRKGIKTLYYIR 708 >gi|302525528|ref|ZP_07277870.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. AA4] gi|302434423|gb|EFL06239.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. AA4] Length = 938 Score = 316 bits (810), Expect = 1e-83, Method: Composition-based stats. Identities = 128/622 (20%), Positives = 226/622 (36%), Gaps = 28/622 (4%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E +L F ++P FN GT Q+S+CF+ V D + I +E ++ Sbjct: 122 EIFEHELTWMLLHQVFSFNSPVWFNVGTSSKQQVSACFILAVDDTMESILNWYREEGLIF 181 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 182 KGGSGAGLNLSRIRSSKELLTS-GGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 240 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+EEF+ + + + D + + V + + + D Sbjct: 241 VDHPDIEEFIQTKAREEEKIKVLRDAGFDMDLSGSDISSVQ------YQNANNSVRVSDE 294 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E + R GE V + A L+R M +E P + + N Sbjct: 295 FMHAVENGTDFGLRARLTGE--VIDRTDAKKLFRSMAQAAWECADPGVQYDSTINDWHTC 352 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVL 632 G + +SN C+E + + CNL S+NLL +++ FD A + + + Sbjct: 353 PESGRITASNPCSEYMH----LDNSSCNLASLNLLKFVSDDGTFDAPLFAKAVEFVITAM 408 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 D I E + R +G+G + L L Y S +A ++ Sbjct: 409 DISICFADFPTEPIADTTRKFRQLGIGYANLGALLMALGHAYDSEGGRALAAAITSLMTG 468 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL----AMNRTSRLPWDE 748 + S ELA G Y + + VR A+ + W + Sbjct: 469 VSYRRSAELAGVVGPYEGYARNAEAHQRVMRKHAAANELVRTYHSNDAAVRALASEEWQK 528 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFL 806 + G RN+ +APT TI + + I+P + + + K G +VN + Sbjct: 529 GIELGTRNGWRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTV 588 Query: 807 VNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA---FEIDPMWLIESAS 861 LK E + + ++Y G + + + + ++ A I PM + + Sbjct: 589 PRALKVLGYQAEQVEAIVEYVAQHGHVVDAPGLRPEHYEVFDCAVGDRSIAPMGHVRMMA 648 Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 Q +I A S + + E + + ++ IY Q W +GLK R ST K + Sbjct: 649 AVQPFISGAISKTVNMPESATVEDVEEIYFQGWKLGLKALAIYRDNCKVGQPLSTAKKKE 708 Query: 921 GKLNAVPVTDPNSSTHSLGIPS 942 A P +P Sbjct: 709 AVAEAEPEKVVEYRPVRRRLPK 730 >gi|53728875|ref|ZP_00348265.1| COG0209: Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207636|ref|YP_001052861.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae L20] gi|165975604|ref|YP_001651197.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251972|ref|ZP_07338143.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247134|ref|ZP_07529186.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307256173|ref|ZP_07537960.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260606|ref|ZP_07542298.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126096428|gb|ABN73256.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875705|gb|ABY68753.1| ribonucleoside-diphosphate reductase alpha subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649402|gb|EFL79587.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856383|gb|EFM88534.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306865354|gb|EFM97250.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869683|gb|EFN01468.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 554 Score = 316 bits (810), Expect = 1e-83, Method: Composition-based stats. Identities = 155/581 (26%), Positives = 251/581 (43%), Gaps = 94/581 (16%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ + +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSVIRN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L SSS+E+ VC L S+NLL D ++ + V Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +E+A + HRA+GLG++G+ S L +I + S +A++ + + + Sbjct: 303 FIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNLIFKTLQE 362 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 + AS ELA+ G KG Sbjct: 363 KTLKASQELAKRFGEPELLKG--------------------------------------- 383 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ M+IAPT + + I G VS S++P N YVK N FL L+ Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQ 440 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A++RQK+IDQ Q Sbjct: 441 EKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 500 Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 S+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 501 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|254776338|ref|ZP_05217854.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium avium subsp. avium ATCC 25291] Length = 693 Score = 316 bits (810), Expect = 1e-83, Method: Composition-based stats. Identities = 169/707 (23%), Positives = 289/707 (40%), Gaps = 73/707 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + ++VL Q + + E I E R + + + L + Sbjct: 12 QFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENYYEREVLDQYSRNFVKALLDRA 71 Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ +LG Y Y L +G R E + + VA+ LA + A + Sbjct: 72 YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGD---TGLAEKLV 128 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 129 DEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 188 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 189 LLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 248 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 249 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGLPFADIS 305 Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 + + ++ + I A ++ + + FE+G+P+I F+D N +P G + Sbjct: 306 VTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--DGKITH 363 Query: 582 SNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI + + CNLGS+N+ D A TI A+ Sbjct: 364 SNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIAKT-----MDSPDFAQTIEVAI 418 Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 419 RALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIYFY 478 Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMN 739 + +HA+ AS +A ERG + F+ S + G F + E + + Sbjct: 479 TVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAGIR 538 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GD 798 ++ W LK+ V+ G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 539 IPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEGKIGR 598 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 ++ N+ + + A+EI +I+ Sbjct: 599 VYYPAPYMTND-------------------------------NLEYYQDAYEIGYEKIID 627 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 628 TYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674 >gi|119718033|ref|YP_924998.1| vitamin B12-dependent ribonucleotide reductase [Nocardioides sp. JS614] gi|119538694|gb|ABL83311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nocardioides sp. JS614] Length = 956 Score = 316 bits (810), Expect = 1e-83, Method: Composition-based stats. Identities = 129/602 (21%), Positives = 240/602 (39%), Gaps = 28/602 (4%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382 V G + E E LL +F ++P FN GT Q+S+CF+ +V D + Sbjct: 104 VDHGYFATVGDAEVFEHELTWLLVHQYFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDS 163 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I +E + K G G + + +R + G + G + F++ A+ +A + G Sbjct: 164 ILNWYKEEGFIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGG 222 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R+ A L+ H D+EEF++ + D R D + + V Sbjct: 223 ATRRAAKMVVLDVDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGKDITSVQ------Y 276 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 + + + D + + E + R GE V ++ A L+RK+ +E P + Sbjct: 277 QNANNSVRVSDEFMRAVEDGTDFGLRARKTGE--VIERVDARELFRKISQAAWECADPGL 334 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDK 620 + D N G + +SN C+E S + + CNL S+NLL ++ FD + Sbjct: 335 QYDDTINDWHTNPETGRITASNPCSEYM----SLDNSSCNLASLNLLKFLKDDDTFDAEL 390 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 A + + +D I E ++ +R +G+G + L + + Y S Sbjct: 391 FAKAVEVIITAMDISICFADFPTEAIGRTTVDYRQLGIGYANLGALLMAMGLGYDSDGGR 450 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DEL 736 +A ++ + S ELA G Y+ + + VR + Sbjct: 451 AMAAAITSLMTGTSYKRSAELAGVVGPYNGYARNAEAHKRVMRKHQAANDTVRTLAITDS 510 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794 +++ + W ++ + T G RN+ +APT TI + + I+P + + + K Sbjct: 511 QVHKLATQAWADVIELGATHGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLV 570 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF--- 849 G +VN + LK+ E + + + Y G + + + + ++ TA Sbjct: 571 GGGSMQIVNQTVPRALKKLGYQPEQIEAIVAYIAEHGHVVDAPGLRTEHYEVFDTAMGVR 630 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + PM + + Q ++ A S + L E + + ++ IY Q+W +GLK T R + Sbjct: 631 SLKPMGHVRMMAAAQPFLSGAISKTVNLPETATVEDVEDIYLQSWKLGLKATAIYRDNAK 690 Query: 909 TS 910 Sbjct: 691 VG 692 >gi|226365903|ref|YP_002783686.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus opacus B4] gi|226244393|dbj|BAH54741.1| ribonucleoside-diphosphate reductase alpha chain [Rhodococcus opacus B4] Length = 711 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 180/742 (24%), Positives = 303/742 (40%), Gaps = 81/742 (10%) Query: 191 DGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 +S +L+ + + L R + + + H Sbjct: 4 PDVSSGELDYHALNAMLNLYGPNGEIQFEKDREAANQYFLQ-----HVNQNTVFFHNQ-- 56 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-I 309 E ++E R + + + L + ++ +LG Y Y L Sbjct: 57 --DEKLDYLVKENYYEREVLDQYTRNFVKSLIDHAYSKKFRFPTFLGAFKYYTSYTLKTF 114 Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 +G R E + VA+ LA + E+ A + + + + F +TPT NSG + + Sbjct: 115 DGKRYLERFEDRVCMVALTLAAGD---EELATKLVDEIIAGRFQPATPTFLNSGKKQRGE 171 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SCFL + D++ I ++ L+K GG+ + VR GA I +S GVIP Sbjct: 172 PVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKKIENQSSGVIPI 231 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD Sbjct: 232 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPD 291 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALW 546 + + +N LFSP D+ +YG F + + ++ + KI A + Sbjct: 292 ITFELAKKNEDMYLFSP---YDVERIYGVPFADINVTEKYYEMVDDKRIRKSKIKAREFF 348 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSS 594 + + + FE+G+P+I ++D N +P G V SNLC+EI S Sbjct: 349 QTVAELQFESGYPYIMYEDTVNRANPI--AGKVTHSNLCSEILQVSTPSEFNDDLSYSHI 406 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTH 653 + CNLGS+N+ D A TI T++R L V D + ++ KK+N Sbjct: 407 GKDISCNLGSLNIAKT-----MDSPDFAQTIETSIRALTAVADQTSIDSVPSIKKANDEG 461 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFK 712 AIGLG M L I Y S E ++ + + FHAI AS E+A+ERG Y + F Sbjct: 462 HAIGLGQMNLHGYLARERIHYGSDEGIDFTNIYFYTVVFHAIRASNEIAKERGTYFAGFP 521 Query: 713 GSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 S + G + + E + + ++ ++ W ELK V+ G+ N N Sbjct: 522 ESKYASGEYFDKYTDQVWEPKTERVRQLFADAGLHIPTQDDWRELKASVQQHGIYNQNLQ 581 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823 A+ PT +I+ I + SI P + ++ G +L N+ Sbjct: 582 AVPPTGSISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND-------------- 627 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + + A+EI +I++ + + +DQ SL L+ + + Sbjct: 628 -----------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATT 670 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 671 RDINKAQIYAWRKGIKTLYYIR 692 >gi|327537908|gb|EGF24608.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula baltica WH47] Length = 1040 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 123/622 (19%), Positives = 219/622 (35%), Gaps = 27/622 (4%) Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + +T ++ +PQ S+CF+ +V D++ I AML K+ G G D Sbjct: 187 MCNWHWDRTQNTTAQPDNPYEYPQGSACFIQSVDDNMEDIMRLACSEAMLFKFGSGTGTD 246 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462 + +R + G G G + F++V + A V GGK R+ A L+ WH D+ EF Sbjct: 247 LSTIRSQREKLSG-GGTPSGPLSFMRVYDSIAGVVKSGGKTRRAAKMQSLKVWHPDILEF 305 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 ++ + + V + + L D Y + Sbjct: 306 IECKWAEEKKAHALIREGYDSNFNGEAYASV------CFQNANLSVRLTDDYMEAVRKNE 359 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 R A L KM + G P + + N + G +++S Sbjct: 360 TFQTRWITDKPTTEPPSYVAKELLNKMAECAWHCGDPGVQYDTTINKWHTCPNSGAINAS 419 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCH 641 N C+E + CNL SINL+ + FD+++ + RT + ++D + Sbjct: 420 NPCSEYMF----LDDTACNLASINLMKFVQQDGSFDHERFRAACRTFFIAQEILVDHASY 475 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 E +++H R +GLG S + +PY S A + + A S EL Sbjct: 476 PTEPIARNSHKFRPLGLGYSNLGSVIMTAGLPYDSDAARGMCGSLTALLHGEANRTSAEL 535 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMR 759 A G + + + + + +R WD + + + G R Sbjct: 536 ASVVGTFDGYVENEAPMLRVMQMHRDACDQINDDGPAELKEAARELWDGVLEIGEKYGFR 595 Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817 N+ +APT TI+ + + I+P + Y + G +VN + LK+ Sbjct: 596 NAQATVLAPTGTISFMMDCDTTGIEPDIALVKYKQLAGGGMLKIVNQTVKLGLKKLGYDA 655 Query: 818 EAMISDLKY--HDGSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWID 868 + + LKY + +I + D+ + AF I I + Q ++ Sbjct: 656 DTIDEILKYVDANDTIEGAPGLQDEHLAVFDCAFKPANGVRSIGWRAHITMMAAAQPFLS 715 Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 A S + + + + + + Y W +GLK R S S +T +A Sbjct: 716 GAISKTVNMPTDVTPQDIADAYFWGWELGLKAIAIYRDGSKQSQPLNTKSDEQKATDAAE 775 Query: 928 VTDPNSSTHSLGIPSSCTSDTE 949 + + P Sbjct: 776 AAKVETVEKIVYKPRRERLPDT 797 >gi|296171153|ref|ZP_06852601.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894289|gb|EFG74044.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 721 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 173/727 (23%), Positives = 294/727 (40%), Gaps = 79/727 (10%) Query: 213 EPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVK 265 E +Y + A L + ++VL Q + + E I E Sbjct: 20 ETDYHALNAMLNLYDADGKIQFDKDVLAAREYFLQHVNQNTVFFHNQDEKLDYLIRENYY 79 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMR 323 R + + + L + ++ +LG Y Y L +G R E + + Sbjct: 80 EREVLDQYSRNFVKALMDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVM 139 Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYG 382 VA+ LA + A + + + F +TPT NSG + + SCFL + D++ Sbjct: 140 VALTLAAGD---TGLAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMES 196 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I ++ L+K GG+ T +R GA I +S GVIP +K+ D+ NQ G Sbjct: 197 IGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLG 256 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA YL H D+ FLD ++ D++ R ++ IPD+ + +N LF Sbjct: 257 ARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLF 316 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWI 561 SP D+ +YG F + + ++ + I A ++ + + FE+G+P+I Sbjct: 317 SP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPYI 373 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLA 609 F+D N +P G + SNLC+EI + + CNLGS+N+ Sbjct: 374 MFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIAK 431 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 D A TI A+R L V D + ++ ++ N+ AIGLG M L Sbjct: 432 T-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLA 486 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727 I Y S E ++ + + +HA+ AS +A ER A+ F+ S + G F Sbjct: 487 RERIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGKAFGGFERSKYKSGEFFDKYTD 546 Query: 728 LLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + E + + ++ W LK+ V+ G+ N N A+ PT +I+ I + Sbjct: 547 QVWEPQTDKVRQLFADAEIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHST 606 Query: 780 QSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + ++ G ++ N+ Sbjct: 607 SSIHPIASKVEIRKEGKIGRVYYPAPYMTND----------------------------- 637 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897 + A+EI +I++ + + +DQ SL L+ + + + ++ AW G+ Sbjct: 638 --NLEYFQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGI 695 Query: 898 KTTYYLR 904 KT YY+R Sbjct: 696 KTLYYIR 702 >gi|190149419|ref|YP_001967944.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249852|ref|ZP_07336056.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307244960|ref|ZP_07527057.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251677|ref|ZP_07533582.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253913|ref|ZP_07535765.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258367|ref|ZP_07540108.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262737|ref|ZP_07544364.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914550|gb|ACE60802.1| ribonucleoside-diphosphate reductase large chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651419|gb|EFL81571.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854125|gb|EFM86333.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860874|gb|EFM92882.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863117|gb|EFM95059.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867551|gb|EFM99398.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871882|gb|EFN03599.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 554 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 155/581 (26%), Positives = 251/581 (43%), Gaps = 94/581 (16%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ + +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSAIRN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L SSS+E+ VC L S+NLL D ++ + V Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +E+A + HRA+GLG++G+ S L +I + S +A++ + + + Sbjct: 303 FIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQSHNIAFDSFQAMQKNNLIFKTLQE 362 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 + AS ELA+ G KG Sbjct: 363 KTLKASQELAKRFGEPELLKG--------------------------------------- 383 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ M+IAPT + + I G VS S++P N YVK N FL L+ Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQ 440 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A++RQK+IDQ Q Sbjct: 441 EKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 500 Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 S+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 501 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|197121783|ref|YP_002133734.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. K] gi|196171632|gb|ACG72605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. K] Length = 595 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 168/640 (26%), Positives = 264/640 (41%), Gaps = 86/640 (13%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349 L +L RY L G IE P A F RVA +A E + A F +++ Sbjct: 4 LGENALHVLERRYLLRDEAGQVIETPGAMFRRVAQAVAAAEAPAARSAWAERFEARMAAL 63 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + ++PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R Sbjct: 64 ELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRP 123 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G + T+G + G + F++V + + QGG R+GA A L H DV EF+D ++ Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLGADHPDVLEFVDAKRAA 183 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + + N + PD + W L P Sbjct: 184 GLE-----NFNISVAAPDALFHAAARGGRWALRHPR------------------------ 214 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 V R++ A L ++ + +G P + F D +P +G + N C E Sbjct: 215 ---GGAVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQP 271 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L C LGS+NL + D ++L + +R VR+LD+V+D+N + + + Sbjct: 272 LLPF----EACTLGSVNLARFERAGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEI 327 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 + +R IGLG+MG+ L L IPY +PEA+ +A E M F+ A +AS LA ERGA+ Sbjct: 328 SRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFP 387 Query: 710 SFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F S G P RN+ IAP Sbjct: 388 GFASSAPAGAGGRP-----------------------------------RRNATVTTIAP 412 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD----LWDEAMISDL 824 T T+A I G S I+P + YV+ + ++ L E Sbjct: 413 TGTLAIIAGCSSGIEPLFALTYVRHALD------DAALPEEHPALGRALRAAGAEAALPA 466 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 G + +PD + ++ ATA ++ P + + Q+ +D S + L S + Sbjct: 467 VRAAGRARGVAGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVE 526 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 + YR A+ +G K R S + +G+L Sbjct: 527 DVAGAYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566 >gi|294782023|ref|ZP_06747355.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 1_1_41FAA] gi|294481834|gb|EFG29603.1| ribonucleoside-diphosphate reductase, alpha subunit [Fusobacterium sp. 1_1_41FAA] Length = 611 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 198/628 (31%), Positives = 315/628 (50%), Gaps = 56/628 (8%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 K++ D + N +++ + AC GL +V+ + S + ++ ++ +LI + Sbjct: 7 KVINRDNIVEDLNIEKIREKLLRACDGL-EVNMVELESNIDSIYEENITTQKIQASLINT 65 Query: 206 SRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + T+ +E ++A V R L+ + REV +H + Y + F + I+ V Sbjct: 66 AVTMTSFEESDWAYVAGRLLMMEAEREV------------YHSRKFSYGD-FAKTIKHMV 112 Query: 265 KARLLHES---MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 + L E + +L ++ + RD ++Y G +L +RY + +G E+PQ F Sbjct: 113 ELGLYDERLLAYTEEELNQISQLIDLSRDMVYDYAGANMLVNRYLIKHDGKTYELPQETF 172 Query: 322 MRVAMGLALKETE---KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 M ++M LAL E E + EFYN LS +TP L N + LSSCF+T + D Sbjct: 173 MTISMMLALNEKEGETRVNIVKEFYNALSLRKLSLATPILANLRIPNGNLSSCFITAIDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ IF + A ++K GG+G + + +R G+ ++G S GV+P++++ NDTAVAV Sbjct: 233 NIESIFYNIDSIARISKNGGGVGVNVSRIRAKGSMVNGYYNASGGVVPWIRIINDTAVAV 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G+R GAV L+TWH+D+E FL+L+ GD R + +D+ +LFMKRV N Sbjct: 293 NQQGRRAGAVTVALDTWHLDIETFLELQTENGDQRGKAYDIYPQVVCSNLFMKRVKNNES 352 Query: 499 WTLFSPDEVSDLH-----DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 WTLF P E+ + +LYG EFE YE E+ +IK+ R +SA L++ ++ Sbjct: 353 WTLFDPYEIRKKYGVELCELYGYEFENLYEKLEKD---NDIKLKRVLSAKELFKSIMKTQ 409 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------------------SSS 594 ETG P+I FKD N + H+G++ + NLC E N S Sbjct: 410 LETGMPYIFFKDRANEVNHNSHMGMIGNGNLCMESFSNFKPTINFVEEEDGNTSIRRSEM 469 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 E CNL S+NL + D+L + AVR LDN ID+ ++++ K N +R Sbjct: 470 GEIHTCNLISLNLAELTS------DELEKYVALAVRALDNTIDLTVTPLKESNKHNLMYR 523 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 IG+G MG L ++ Y E++ +E E I+ ++I AS LA++RGAY +FKGS Sbjct: 524 TIGVGAMGLADYLAREYMIYE--ESINEINELFERIALYSIKASALLAKDRGAYKAFKGS 581 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTS 742 WDQ +F + Sbjct: 582 KWDQAIFFGKKREWYEANSKFKDEWNEA 609 >gi|118468034|ref|YP_886648.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118469666|ref|YP_885419.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118169321|gb|ABK70217.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium smegmatis str. MC2 155] gi|118170953|gb|ABK71849.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium smegmatis str. MC2 155] Length = 706 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E IE R + + + L + ++ +LG Y Y L +G Sbjct: 52 DEKLDYLIENEYYEREVLDQYSRDFIKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 111 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + + A + + + F +TPT NSG + + Sbjct: 112 KRYLERFEDRVVMVALTLAAGD---TELAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPV 168 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K Sbjct: 169 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMK 228 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 229 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 288 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I+A ++ Sbjct: 289 FELAKKNEDMYLFSP---YDVERVYGVPFADVSVTEKYYEMVDDARIRKTKINAREFFQT 345 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 + + FE+G+P+I F+D N G + SNLC+EI S+ E Sbjct: 346 LAELQFESGYPYIMFEDTVNR--SNPIAGKITHSNLCSEILQVSTPSEFNDDLSYAKVGK 403 Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 404 DISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 458 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + FHA+ AS ++A ERG + F+ S Sbjct: 459 IGLGQMNLHGYLARERIYYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGTHFKGFEKS 518 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + ++ ++ W +LK+ V+ G+ N N A+ Sbjct: 519 KYASGEFFDKYTDQVWEPKTDKVRRLFADADIHIPTQDDWKQLKESVQKHGIYNQNLQAV 578 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 579 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYMTND---------------- 622 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 623 ---------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 667 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 668 VNKAQIYAWRKGIKTLYYIR 687 >gi|314966769|gb|EFT10868.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL082PA2] gi|315093314|gb|EFT65290.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL060PA1] gi|315103431|gb|EFT75407.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL050PA2] gi|327327595|gb|EGE69371.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes HL103PA1] Length = 950 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 136/652 (20%), Positives = 241/652 (36%), Gaps = 67/652 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL N+ FD +K I + +D I E K+ R +G+G Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G YS + + Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ A+ ++ WD++ K T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835 I+P + + + K G +VN + LK + + + +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616 Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S K + + A P +P S Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728 >gi|282854026|ref|ZP_06263363.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes J139] gi|282583479|gb|EFB88859.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes J139] gi|314981104|gb|EFT25198.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL110PA3] gi|315091930|gb|EFT63906.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL110PA4] Length = 950 Score = 316 bits (809), Expect = 1e-83, Method: Composition-based stats. Identities = 136/652 (20%), Positives = 241/652 (36%), Gaps = 67/652 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL N+ FD +K I + +D I E K+ R +G+G Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G YS + + Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ A+ ++ WD++ K T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835 I+P + + + K G +VN + LK + + + +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616 Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S K + + A P +P S Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728 >gi|314922993|gb|EFS86824.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL001PA1] Length = 950 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 136/652 (20%), Positives = 241/652 (36%), Gaps = 67/652 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL N+ FD +K I + +D I E K+ R +G+G Sbjct: 378 NLLKFLDENDHFDVEKFTRAIELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G YS + + Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYSGYAENAEPHQAVMAK 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ A+ ++ WD++ K T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835 I+P + + + K G +VN + LK + + + +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616 Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S K + + A P +P S Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEKKAEPEVRIEYRPRRQRLPKS 728 >gi|325675840|ref|ZP_08155524.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus equi ATCC 33707] gi|325553811|gb|EGD23489.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus equi ATCC 33707] Length = 728 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 171/675 (25%), Positives = 286/675 (42%), Gaps = 62/675 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + E R + + + +L + ++ +LG Y Y L +G Sbjct: 74 DEKLDYLVRENYYEREVLDQYSRNFVKWLIDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 133 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A E + + + F +TPT NSG + + Sbjct: 134 KRYLERFEDRVCMVALTLAAGD---ETLATELVDEIIAGRFQPATPTFLNSGKKQRGEPV 190 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T VR GA I +S GVIP +K Sbjct: 191 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 250 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 251 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 310 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + KI A ++ Sbjct: 311 FELAKKNEDMYLFSP---YDVERIYGVPFADINVTEKYHEMVDDKRIRKSKIKAREFFQT 367 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCN 601 + + FE+G+P+I F+D N +P G + SNLC+EI T N + V Sbjct: 368 LAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSTFNDDLSYSHVGK 425 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660 S NL + D A TI T++R L V D + +++ ++ N+ AIGLG Sbjct: 426 DISCNLGSLNIALTMDSPDFAKTIETSIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQ 485 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L I Y S E ++ + + +HAI AS +A+ERG + F S + G Sbjct: 486 MNLHGYLARERIFYGSEEGIDFTNIYFYSVVYHAIRASNLIAKERGTHFKGFPESDYASG 545 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + + E + + ++ ++ W ELK V+ G+ N N A+ PT + Sbjct: 546 KYFDKYTDQVWEPKTEKVRQLFADAGIHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGS 605 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G +L N+ Sbjct: 606 ISYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLTND--------------------- 644 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 645 ----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQ 694 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 695 IYAWRKGIKTLYYIR 709 >gi|307249356|ref|ZP_07531350.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858650|gb|EFM90712.1| Ribonucleotide reductase, alpha subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 554 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 155/581 (26%), Positives = 250/581 (43%), Gaps = 94/581 (16%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ + +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L SSS+E+ VC L S+NLL D ++ + V Sbjct: 243 KDKNMTVHASNLCTEIMLPSSSDESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + +E+A + HRA+GLG++G+ S L +I + S +A++ + + Sbjct: 303 FIEKSKDMPFLERANRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNSLIFKTLQE 362 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 + AS ELA+ G KG Sbjct: 363 KTLKASQELAKRFGEPEILKG--------------------------------------- 383 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ M+IAPT + + I G VS S++P N YVK N FL L+ Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQ 440 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A++RQK+IDQ Q Sbjct: 441 EKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 500 Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 S+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 501 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|213965883|ref|ZP_03394074.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium amycolatum SK46] gi|213951461|gb|EEB62852.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium amycolatum SK46] Length = 717 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 177/750 (23%), Positives = 299/750 (39%), Gaps = 81/750 (10%) Query: 183 SETYKNMYDGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYK 238 SE K + + + E L+ + + L ++ + ++ AR + + + Sbjct: 2 SEMGKQVAEPVGEDKLDYHALNALLNLYGEDGKIQFDKDRMAARQFFLQHVNQNTVFFHN 61 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL 298 +K + +E + E D+ L + +LG Sbjct: 62 LREKLDY-------------LVENHYYEAEVLEKYEFEDVKALFKQAYAHKFRFQTFLGA 108 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + RV M A + + + F +TP Sbjct: 109 YKYYTSYTLKTFDGKRYLERYED---RVCMVALTLADGDLGLAQHLVDEIIAGRFQPATP 165 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T NSG + SCFL + D++ I A+ + L+K GG+ + +R GA I Sbjct: 166 TFLNSGKAQRGEPVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNLREQGAPIK 225 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 226 HIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIR 285 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGE 533 ++ IPD+ + +N LFSP D+ +YGK F ENY + Sbjct: 286 IKSLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGKPFADINITENYADMVEDPR 342 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--- 590 I+ + I+A ++ + + FE+G+P+I F+D N +P G ++ SNLC+EI Sbjct: 343 IRKQK-INARQFFQTIAEIQFESGYPYIMFEDTVNRANPI--EGRINMSNLCSEILQVNT 399 Query: 591 ----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 N+ V S NL + D T+ TA+R L V + + ++ Sbjct: 400 PSTYNADLSYEHVGEDISCNLGSLNIAMTMDSPDFGRTVETAIRGLTAVSEQTSIDSVPS 459 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 +K N AIGLG M L I Y S E ++ + + + + AS ++A+ER Sbjct: 460 IRKGNDGSHAIGLGQMNLHGYLGREKIMYGSEEGLDFTNAYFAAVLYAVLRASNKIARER 519 Query: 706 -GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTI 756 + +F+ S + G + P + V++ + W +LK V Sbjct: 520 GQKFVNFENSDYASGKYFDNFDPAEFQPKTQHVKEIFENSTAHIPDAEDWAQLKADVMEY 579 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815 G+ N N A+ PT +I+ I + SI P + ++ G L N+ Sbjct: 580 GLFNRNLQAVPPTGSISYINNSTSSIHPIASQIEIRKEGKIGRVYYPAPHLDND------ 633 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 ++ A+EI +I++ + K++DQ SL L Sbjct: 634 -------------------------NREYFQDAYEIGYEKIIDTYAVATKYVDQGLSLTL 668 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + S + L+ AW G+KT YY+R Sbjct: 669 FFKDTVSTRDLNRAQIYAWRKGIKTLYYIR 698 >gi|254820781|ref|ZP_05225782.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium intracellulare ATCC 13950] Length = 693 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 168/680 (24%), Positives = 283/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I+E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIKENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLASGD---TILAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKKNEDMYLFSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSVFNDDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNESHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E V+ + + +HA+ AS +A ERG+ + F+ S Sbjct: 446 IGLGQMNLHGYLARERIHYGSEEGVDFTNIYFYTVLYHALRASNRIAIERGSKFGGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E E + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTEQVWEPATPRVREIFAEAGIRIPTQDDWRRLKESVQEHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G +L N+ Sbjct: 566 PPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 655 VNKAQIYAWRKGIKTLYYIR 674 >gi|217969781|ref|YP_002355015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thauera sp. MZ1T] gi|217507108|gb|ACK54119.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thauera sp. MZ1T] Length = 957 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 147/631 (23%), Positives = 249/631 (39%), Gaps = 78/631 (12%) Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLY-------G 382 E ++ +F F+ + +GT L +CF+ V D + G Sbjct: 58 AEDKRAHWEAKFLE-AQEKGFVPAGRINSAAGTTLAATLINCFVQPVGDSVTEAVDGRPG 116 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ AL + A + GG+G D++ +R GA + GT + G + +++V + + V G Sbjct: 117 IYTALAQAAETMRRGGGVGYDFSSIRPKGALVKGTASNASGPVSYMRVFDRSCETVESAG 176 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA L H D+EEF+ + D + N + + D FM+ V + L Sbjct: 177 ARRGAQMGVLRCDHPDIEEFIHAK-----DEGDLTNFNISVGVTDPFMQAVEADGDVELV 231 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 E ++ G + V+RK+ A LW +++ ++ P I Sbjct: 232 HKAEPTEEVKAAGAY-----------QRDDGMWVYRKVRARELWDQVMRSTYDHAEPGIL 280 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FD 617 F D N + + + ++N C E L C LGSINL N FD Sbjct: 281 FLDRMNADNNLYYCETIEATNPCAEQPLPPY----GCCCLGSINLTLFVKNPFGDKAEFD 336 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 Y + ++R+LDNV+++ + + + R +GLG G AL +L Y + Sbjct: 337 YAGFGKVVDVSIRMLDNVLEVTHWPLAQQHAEAQSKRRVGLGFTGLGDALIMLGQRYDTA 396 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA 737 EA E A + EF+ A AS ELA+ERGA+ F L+ G Sbjct: 397 EAREEARKISEFMRNRAYLASSELARERGAFPLFNADLYLSGGNF--------------- 441 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795 + ++K +++ G+RNS+ ++IAPT TI+ S I+P + Y + Sbjct: 442 ----ASRLPADVKDKIRKHGIRNSHLLSIAPTGTISLAFADNASNGIEPPFSYTYTRRKR 497 Query: 796 --SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G F + V + K+ G++ D L + TA EI Sbjct: 498 MADGTFK---EYAVEDYA---------WRLYKHLGGNV-------DKLPQSFVTALEISA 538 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + + ++D + S + + + + + +Y AW GLK R S Sbjct: 539 QAHKDMVAAVAPYVDTSISKTVNVPEDYPYAEFEDLYLTAWKAGLKGLATYRPNSVLGSV 598 Query: 913 KS-TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 S T + + V + D N +P+ Sbjct: 599 LSVTPTAEQKQPHDVEIADANKRLSIKNLPA 629 >gi|300784301|ref|YP_003764592.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis mediterranei U32] gi|299793815|gb|ADJ44190.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis mediterranei U32] Length = 937 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 130/654 (19%), Positives = 233/654 (35%), Gaps = 30/654 (4%) Query: 306 FLHINGSRIEMPQAFFMRVAM--GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 I+ +++ A G + E E +L F ++P FN GT Sbjct: 92 RERSLKQLIDRVVHTYVKAARDHGYFAAPQDLEIFEHELTWMLLHQVFSFNSPVWFNVGT 151 Query: 364 R-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 Q+S+CF+ V D + I +E ++ K G G + + +R + G + Sbjct: 152 PSKQQVSACFILAVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSSKELLTS-GGTAS 210 Query: 423 GVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G + F++ A+ +A + G R+ A L+ H D+EEF+ + + D Sbjct: 211 GPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIEEFIQTKAREEKKIKVLRDAGF 270 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + V + + + D + + E E R GE V + Sbjct: 271 DMDLSGADISSVQ------YQNANNSVRVTDEFMQAVENGTEFGLRARLTGE--VIDRTD 322 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L+R M +E P I + N G + +SN C+E + + CN Sbjct: 323 AKKLFRTMAQAAWECADPGIQYDGTINDWHTCPESGRITASNPCSEYMH----LDNSSCN 378 Query: 602 LGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L S+NLL FD A + + +D I E + R +G+G Sbjct: 379 LASLNLLKFVTPEGTFDAPLFARAVEFVITAMDVSICFADFPTEPIADTTRKFRQLGIGY 438 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 + L L Y S +A ++ + S E+A+ GAY + + Sbjct: 439 ANLGALLMALGHAYDSEGGRALAAAITSLMTGVSYRRSAEMARVVGAYEGYARNAEAHQR 498 Query: 721 FPIDSIGLLAEVRDEL----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 VR A+ + W + + G RN+ +APT TI + Sbjct: 499 VMRKHAAANELVRTYHSNDAAVRALATEEWQKGIEIGAKHGWRNAQASVLAPTGTIGFMM 558 Query: 777 GV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIG 832 + I+P + + + K G +VN + L+ E + + ++Y +G + Sbjct: 559 DCDTTGIEPDFSLVKFKKLVGGGSMQIVNQTVPRALEALGYLTEQVEAIVEYVAQNGHVV 618 Query: 833 NIERIPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 + + + ++ A I PM + + Q ++ A S + + E + ++++ I Sbjct: 619 DAPGLRPEHYEVFDCAVGERSIAPMGHVRMMAAVQPFLSGAISKTVNMPESATVEEVEEI 678 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 Y Q W +GLK R ST K V + L Sbjct: 679 YFQGWKLGLKALAIYRDNCKVGQPLSTAKKESAAAEPEKVVEYRPVRKRLPKKR 732 >gi|260102936|ref|ZP_05753173.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] gi|260083262|gb|EEW67382.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] Length = 722 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 179/750 (23%), Positives = 316/750 (42%), Gaps = 79/750 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ T + E NY +E + + + L E Sbjct: 8 DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 58 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ + + + + + + ++G Y Y L N ++ +E Sbjct: 59 YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 118 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + R M E+ A+ + S F +TPT N+G + + SC+L Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 175 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q ++ + I+A ++ + + Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFINARKFFQTIAEVQ 352 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 412 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL S + +V+ L+ V + KK N +RAIGLG Sbjct: 413 LGSLNIAAAMNSA----DKLGSLVSDSVQALNRVARSSDLDCAPSIKKGNKANRAIGLGA 468 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA++ GA+ FK S + G Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 528 Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I + E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 529 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + V ++ Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 +I D + + A+E+ P +I+ + QK++DQ+ SL L++++ + + L+ Y Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678 Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 A+ + YY+R R E T Sbjct: 679 YAFKKRCNSIYYVRVREKVLAGSENLTADE 708 >gi|323495951|ref|ZP_08101017.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326] gi|323318986|gb|EGA71931.1| ribonucleotide reductase r1 chain [Vibrio sinaloensis DSM 21326] Length = 693 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 173/676 (25%), Positives = 286/676 (42%), Gaps = 81/676 (11%) Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAF-----EYLGLQILYDRYFLH-INGSRI-EMP 317 + E + +D +L L ++R + +LG + Y L +G R E Sbjct: 48 EGYYEKEVLEQYDREFLQ--LIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGKRYLERF 105 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376 + RV M + A++ + S F +TPT NSG + +L SCFL + Sbjct: 106 ED---RVVMTALTLARGDKAFALDLMQEIISQRFQPATPTFINSGKKSRGELISCFLLRI 162 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ I A+ + L++ GG+ + +R GA I G +S GV+P +K+ D+ Sbjct: 163 EDNMESIGRAINSSLQLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKLLEDSFS 222 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 NQ G R+GA YL H D+ +FLD ++ D++ R ++ IPD+ ++ QN Sbjct: 223 YANQLGARQGAGAVYLNAHHPDIMQFLDTKRENADEKIRIKTLSLGIVIPDITLELAKQN 282 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 LFSP +V +YG F E Y D I+ + ISA L++ + + F Sbjct: 283 KDMYLFSPHDV---ERVYGVPFSEISVSEKYHEMVDDPRIRKSK-ISARGLFQTLAEIQF 338 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNL 602 E+G+P++ F+D N +P G ++ SNLC+EI + CNL Sbjct: 339 ESGYPYLMFEDTVNAANPI--KGRINMSNLCSEILQVNDASHFNDDLSYAHLGRDISCNL 396 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLM 661 GS+N+ D+ T+ ++R L+ V +++ ++ ++ N AIGLG M Sbjct: 397 GSVNIAKALDGGHLDH-----TVEVSIRALNAVSEMSAIDSVPSIRRGNDESHAIGLGQM 451 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGV 720 L I Y S EAV+ +H ++AS +LA ER + F+ S + G Sbjct: 452 NLHGFLAREQIHYDSEEAVDFTRTYFATTLYHCLTASNKLALERKQVFVGFEHSQYATGE 511 Query: 721 FPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F + R + L M S W +L+ +V G+ N N AI PT +I Sbjct: 512 FFTKYLQQDYSPRTDIVAALFERLDMRVPSIDDWQQLQSKVMESGLYNRNLQAIPPTGSI 571 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G +L N+ Sbjct: 572 SYINDATASIHPVTAKVEIRKEGKIGRVYFPAPYLSND---------------------- 609 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 A+EI P +I+ + + +DQ SL L+ + + + ++ Sbjct: 610 ---------NLDYFKDAYEIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRDINKAQI 660 Query: 891 QAWLMGLKTTYYLRSR 906 AW +KT YY+R R Sbjct: 661 YAWKKKIKTLYYIRMR 676 >gi|108798785|ref|YP_638982.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium sp. MCS] gi|119867903|ref|YP_937855.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium sp. KMS] gi|126434386|ref|YP_001070077.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium sp. JLS] gi|108769204|gb|ABG07926.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. MCS] gi|119693992|gb|ABL91065.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. KMS] gi|126234186|gb|ABN97586.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. JLS] Length = 693 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 169/707 (23%), Positives = 289/707 (40%), Gaps = 73/707 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + ++VL Q + + E I++ R + + + L + Sbjct: 12 QFDKDVLAAREYFLQHVNQNTVFFHNQDEKLDYLIQKDYYEREVLDQYSRNFVKTLLDRA 71 Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ +LG Y Y L +G R E + + VA+ LA + A + Sbjct: 72 YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGD---TTLAEKLV 128 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 129 DEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 188 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 189 LLSNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 248 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 249 LDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSP---YDVERVYGVPFADIS 305 Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 + + ++ + I A ++ + + FE+G+P+I ++D N G + Sbjct: 306 VTEKYYEMVDDSRIRKTKIKAREFFQTLAELQFESGYPYIMYEDTVNR--SNPIEGKITH 363 Query: 582 SNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI S+ E CNLGS+N+ D A TI A+ Sbjct: 364 SNLCSEILQVSTPSEFNDDLSYAKVGKDISCNLGSLNIAKA-----MDSPDFAQTIEVAI 418 Query: 630 RVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 419 RALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGVDFTNIYFY 478 Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMN 739 + +HA+ AS +A ERG + F+ S + G F E + + + Sbjct: 479 TVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQPWEPKTERVRQLFADAGIR 538 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GD 798 ++ W LK+ V+ G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 539 IPNQDDWRRLKESVQQHGIYNQNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKIGR 598 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +L N+ + + A+EI +I+ Sbjct: 599 VYYPAPYLTND-------------------------------NLEYYQDAYEIGYEKIID 627 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 628 TYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674 >gi|262165763|ref|ZP_06033500.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus VM223] gi|262025479|gb|EEY44147.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus VM223] Length = 722 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 169/743 (22%), Positives = 301/743 (40%), Gaps = 89/743 (11%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S DL+ + + ++++E + K R + + + +K + Q Sbjct: 18 SRKDLDFHALNAMLNILDREGQIQFDADKRAVRQYFLQHVNQNTVFFHHLDEKLDYLLEQ 77 Query: 250 CLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Y + F Y E + F K+ F L+ Sbjct: 78 GYYDAQVFAPYSREFLHHIWQSAFTQKFRFPSFLGAYKF-----FTAYALKT-------R 125 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 +E + + A+ LA + + + + S F +TPT N+G + + Sbjct: 126 DGKRYLERFEDRVVMTALTLARGDEAFAMQLMR---EILSGRFQPATPTFINAGKKSRGE 182 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L SCFL + D++ I A+ + L++ GG+ + +R GA I +S GVIP Sbjct: 183 LISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPV 242 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ +PD Sbjct: 243 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPD 302 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVAL 545 + + +N LFSP D+ +YG F E Y+ + EI+ + I+A L Sbjct: 303 ITFELAKKNKEMYLFSP---YDVERVYGVPFADISVNEKYDEMVENAEIRKTK-INAREL 358 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593 ++ + + FE+G+P++ F+D N +P G + SNLC+EI Sbjct: 359 FQTIAEIQFESGYPYLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQY 416 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652 CNLGS+N+ D L ++ AVR L V ++ ++ +K N Sbjct: 417 LGTDISCNLGSLNIAKT-----MDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQ 471 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSF 711 AIGLG M L I Y S E ++ + I+FH + AS ++A+E + + F Sbjct: 472 SHAIGLGQMNLHGFLAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDF 531 Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 + S + G + + ++ + + A+ ++ W +LK+ V G+ N N Sbjct: 532 ERSRYASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNL 591 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I + SI P + ++ G ++ N+ Sbjct: 592 QAVPPTGSISYINYSTSSIHPITAKIEIRKEGQVGRVYYPAPYMTND------------- 638 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + A+EI P +I++ + + +DQ SL L+ + Sbjct: 639 ------------------NLNYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASAT 680 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 681 TRDINKAQIYAWKKGIKTLYYVR 703 >gi|269794348|ref|YP_003313803.1| ribonucleoside-diphosphate reductase class Ib subunit alpha [Sanguibacter keddieii DSM 10542] gi|269096533|gb|ACZ20969.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Sanguibacter keddieii DSM 10542] Length = 693 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 171/675 (25%), Positives = 284/675 (42%), Gaps = 64/675 (9%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +E + + L + ++ +LG Y Y L +G Sbjct: 40 EKLEYLVENKYYEPEILAKYTPAFVKSLFDLAYSKKFRFETFLGAFKYYTSYTLKTFDGK 99 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA E AV + + F +TPT NSG + S Sbjct: 100 RYLERFEDRVCMVALTLA---DGDETTAVNVVEEIIAGRFQPATPTFLNSGKAQRGEAVS 156 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I + L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 157 CFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVMKL 216 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 217 LEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 276 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548 + +N LFSP D+ +YGK F E Y D G I+ + I A ++ Sbjct: 277 ELARKNEDMYLFSP---YDVERVYGKPFADVAISEKYHEMVDDGRIRKTK-IKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSEETAVCNLG- 603 + + FE+G+P++ F+D N +P G + SNLC+EI + +++ + ++G Sbjct: 333 LAELQFESGYPYVMFEDTVNAANPI--KGRITHSNLCSEILQVSTPSTYNDDLSYEHIGR 390 Query: 604 --SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660 S NL + D A TI TA+R L V D + ++ +++N + AIGLG Sbjct: 391 DISCNLGSMNIAKAMDSPDFAKTIDTAIRALTAVSDQTSIDSVPSIRRANESGHAIGLGQ 450 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L + Y S E ++ + ++FHAI+AS LA ER + F+ S + G Sbjct: 451 MNLHGYLARERVFYGSEEGIDFTNIYFYTVAFHAIAASNRLAIERKRFFGGFEDSKYATG 510 Query: 720 VFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + + E + ++ ++ W ELK V G+ N N A+ PT + Sbjct: 511 EYFDKYTDQVWEPATDRVRQIFADAGVHIPTQQDWAELKASVMEHGIYNQNLQAVPPTGS 570 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G +L N+ Sbjct: 571 ISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND--------------------- 609 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 610 ----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQ 659 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 660 IYAWRKGIKTLYYIR 674 >gi|157371958|ref|YP_001479947.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia proteamaculans 568] gi|157323722|gb|ABV42819.1| ribonucleoside-diphosphate reductase, alpha subunit [Serratia proteamaculans 568] Length = 714 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 173/738 (23%), Positives = 303/738 (41%), Gaps = 79/738 (10%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 + S L+ + + L + E + ++ AR + + + +K + Sbjct: 10 TTSALDYHSLNAMLNLYDAEGRIQFDKDRLAARQYFLQHVNQNTVFFHNLEEKLRY---- 65 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 +EEG + + + L ++ +LG Y Y L Sbjct: 66 ---------LVEEGYYEQSVLAQYDFAFIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKT 116 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + VAM LA + A + + S F +TPT N G + Sbjct: 117 FDGKRYLERYEDRVCMVAMTLAAGD---TALAQDLVEEMISGRFQPATPTFLNCGKQQRG 173 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I A+ L+K GG+ T +R +GA I +S GVIP Sbjct: 174 ELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIP 233 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 234 IMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 293 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545 D+ + N LFSP D+ +YG F + + + + ++ + +I+A Sbjct: 294 DITFELAKNNEEMYLFSP---YDVEQVYGVPFSEISVSEKYREMVDDKRIRKSRINAREF 350 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSSEETAVCN 601 ++ + + FE+G+P++ F+D N G ++ SNLC+EI + ++ + Sbjct: 351 FQVLAEIQFESGYPYMMFEDTVNR--ENPIAGRINMSNLCSEILQVNRASTYHDDLSYDQ 408 Query: 602 LG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 +G S NL + D + TA+R L V D+ + ++ + N + AIG Sbjct: 409 VGKDISCNLGSLNIAKTMDAPDFGKAVDTAIRALTAVADMSDIRSVPSIAEGNRSSHAIG 468 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L I Y S E ++ + +++HAI AS +LA ER A+ F+ S + Sbjct: 469 LGQMNLHGYLARERIFYGSEEGIDFTNIYFYAVAYHAIRASNQLAIERGSAFGGFEDSTY 528 Query: 717 DQGVFP-----IDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAP 768 G + D + VR A + R W L++ V G+ N N A+ P Sbjct: 529 ASGEYFSKYTERDWLPQTERVRTLFADANIAIPGREEWLALRQSVMMHGLYNQNLQAVPP 588 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + ++ G ++ N+ Sbjct: 589 TGSISYINNSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMTND------------------ 630 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + A++I P +I++ + + +DQ SL L+ + + + ++ Sbjct: 631 -------------NLEYYQDAYDIGPEKIIDTYAAASQHVDQGLSLTLFFRDTATTRDIN 677 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 678 RAQIYAWRKGIKTIYYIR 695 >gi|317124572|ref|YP_004098684.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Intrasporangium calvum DSM 43043] gi|315588660|gb|ADU47957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Intrasporangium calvum DSM 43043] Length = 970 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 125/628 (19%), Positives = 236/628 (37%), Gaps = 28/628 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + + + E L F ++P FN GT+ Q+S+CF+ V D + I Sbjct: 111 GYFATDEDAQIFEHELTYSLLHQVFSFNSPVWFNVGTKSPQQVSACFILAVEDSMDSILN 170 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + + G G + + +R + G + G + F++ A+ +A + G R Sbjct: 171 WYKEEGKIFQGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + Sbjct: 230 RAAKMVVLDVDHPDIEEFIETKAREEDKIRALRDAGFDMDL------GGRDIVSVQYQNA 283 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + ++ + + E + + R + V ++ A L+ KM +E P I + Sbjct: 284 NNSVRVNAEFMRAVEEGTKFGLKA--RLDGSVIEEVDARELFHKMAQAAWECADPGIQYD 341 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623 D N G + +SN C+E S + + CNL S+NLL ++ FD Sbjct: 342 DIINDWHTNPETGRITASNPCSEYM----SLDNSSCNLASLNLLKFLRDDDTFDAATFQK 397 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + +D I EK ++ +R +G+G + L Y S +A Sbjct: 398 VTELVITAMDISISFADFPTEKIAETTRNYRQLGIGYANLGALLMATGHGYDSEGGRALA 457 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739 ++ A S ELA G Y+ + + ++ + ++ Sbjct: 458 AAITSLLTGAAYKRSAELAAVVGPYAGYARNAEAHKRVMRKHQAANDTLKTVGVMDADIH 517 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 + + WD + K + G RN+ +APT TI + + I+P + + + K G Sbjct: 518 QAATKAWDVVVKLGEKNGYRNAQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 577 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + LK+ E++ + ++Y H G + + + + +I TA I Sbjct: 578 SMQIVNLTIPRALKKLGYQQESIEAIVEYIAHKGHVIDAPGLKPEHYEIFDTAMGARAIA 637 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q ++ A S + L E + ++++ +Y Q W +GLK R Sbjct: 638 PMGHVRMMAATQPFLSGAISKTVNLPESATVEEIEDVYFQGWKLGLKALAIYRDSCKVGQ 697 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 S + A + Sbjct: 698 PLSDGGSTAKEAQAAKDAGEVKVEKVIE 725 >gi|240950329|ref|ZP_04754599.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor NM305] gi|240295140|gb|EER45959.1| ribonucleotide-diphosphate reductase subunit alpha [Actinobacillus minor NM305] Length = 554 Score = 316 bits (808), Expect = 2e-83, Method: Composition-based stats. Identities = 159/581 (27%), Positives = 249/581 (42%), Gaps = 94/581 (16%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGFADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMETTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSGYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGREWLESMKAGDPYK--------------- 209 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L S+SEE+ VC L S+NLL D ++ + V Sbjct: 243 KDKNMTVHASNLCTEIMLPSNSEESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 302 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + + +A K HRA+GLG++G+ S L +IP+ S EA++ + + + Sbjct: 303 FIEKSKDIPFLHRATKFAIRHRALGLGVLGWHSYLQSNNIPFDSFEAMQKNNLIFKTLQE 362 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 + AS ELAQ G KG Sbjct: 363 KTLKASQELAQRFGEPELLKG--------------------------------------- 383 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ M+IAPT + + I G VS S++P N YVK N FL LK Sbjct: 384 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLK 440 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L E + + + DGS+ ++E++ + K + T EI + +I+ A++RQK+IDQ Q Sbjct: 441 EKGLDKEEIWESILHTDGSVQHLEQLSEHEKDVFKTFAEISQLSVIQQAAQRQKYIDQGQ 500 Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 S+NL + + + L+ +Y A +GLK+ YY S SA V Sbjct: 501 SINLMIHPATPARDLNQLYLTAEELGLKSIYYQNSMSAAQV 541 >gi|283457962|ref|YP_003362568.1| ribonucleotide reductase subunit alpha [Rothia mucilaginosa DY-18] gi|283133983|dbj|BAI64748.1| ribonucleotide reductase, alpha subunit [Rothia mucilaginosa DY-18] Length = 726 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 175/743 (23%), Positives = 300/743 (40%), Gaps = 76/743 (10%) Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKA 243 ++ + G+S +L L L ++ R + + + Sbjct: 19 KSVPEKFKGMSYHELNALL-----NLYDENGQIQFDADRQAARQYFLQ-----HVNNNTV 68 Query: 244 THHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYD 303 H+++ E IE L + + L + +LG Y Sbjct: 69 FFHDLE----EKIEYLIENQYYEPELFDKYNFQFIKNLFKRAYAVKFRFPTFLGAFKFYT 124 Query: 304 RYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L +G R E + RV M L EK A + + + S F +TPT N+ Sbjct: 125 SYALKTFDGQRYLERFED---RVCMVALLLAEGNEKLAEDIVDEIISGRFQPATPTFLNA 181 Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 G + +L SCFL + D++ I ++ L+K GG+ T +R GA I + Sbjct: 182 GKKQRGELVSCFLLRMEDNMESIGRSINSALQLSKRGGGVAFALTNLRESGAPIKKIENQ 241 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 242 SSGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYAFLDTKRENADEKIRIKTLS 301 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFR 538 IPD+ + +N LFSP +V ++ + Y A + K Sbjct: 302 LGVVIPDITFELAKKNEDMYLFSPYDVERIYGVPFSDINVSEKYYEMVDDARITKSK--- 358 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----SSS 594 I+A ++ + + FE+G+P++ F+D N +P G V SNLC+EI + Sbjct: 359 -INAREFFQTIAEIQFESGYPYVMFEDTVNRANPI--AGKVIMSNLCSEILQVSEPSTYH 415 Query: 595 EETAVCNLG---SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650 + +G S NL + D D T+ TA+R L +V D + ++ ++ N Sbjct: 416 ADLGYETVGKDISCNLGSLNIALTMDGDDFGKTVETAIRSLTSVSDQSDIRSVPSIERGN 475 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709 + A+GLG M L H+ Y S EA++ + +++HAI S+++A+ER + Sbjct: 476 NMSHAVGLGQMNLHGYLAREHVYYGSEEALDFTNMYFYTVAYHAIRTSMQIAKERGQRFE 535 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNC 763 F+ S + G F I + E + +R W +L V GM N N Sbjct: 536 GFENSKYASGEFFAKYIEKEWAPQTERTRELFAKHHIPTREEWIQLAADVAQYGMYNQNL 595 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I G + SI P + ++ G ++ N+ Sbjct: 596 QAVPPTGSISYINGSTSSIHPIAAKIEIRKEGKLGRVYYPAPYMTND------------- 642 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 + + ++EI +I++ + + +DQ SL L+ + + Sbjct: 643 ------------------NLEYYQDSYEIGYEKIIDTYAVATQHVDQGLSLTLFFRDTAT 684 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 685 TRDINRAQIYAWRKGIKTIYYIR 707 >gi|254471481|ref|ZP_05084883.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio sp. JE062] gi|211959627|gb|EEA94825.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudovibrio sp. JE062] Length = 716 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 184/726 (25%), Positives = 303/726 (41%), Gaps = 81/726 (11%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES-- 272 +Y + A L ++ ++ + E +F E+ + Sbjct: 17 DYHALNAMLNLYDAEGKIQFDADRQAARQYFLEHVNQNTVFFHSLEEKLSYLVRENYYEA 76 Query: 273 --MMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + +DL ++ YER F F +LG Y Y L +G R E + RV Sbjct: 77 EVLDQYDLAFVKAIFVAAYERKFRFPTFLGAFKFYTSYALKTFDGKRYLERYED---RVV 133 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 M E A+ + + S F +TPT N+G + +L SCFL + D++ I Sbjct: 134 MTALALSRGDEDLAMRMMDEIISNRFQPATPTFLNAGKKQRGELISCFLLRLEDNMESIG 193 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 ++ L+K GG+ T +R GA I G +S GV P +K+ D+ NQ G R Sbjct: 194 RSINSALQLSKRGGGVALLLTNLREAGAPIKGVENQSSGVGPVMKLLEDSFSYANQLGAR 253 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + QN LFSP Sbjct: 254 QGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKQNEEMYLFSP 313 Query: 505 DEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +V +YG F E Y D +I+ +K+ A ++ + + FE+G+P+I Sbjct: 314 HDV---EKVYGIPFSEIAVTEKYREMVDNPKIRK-KKMRAREFFQLLAEIQFESGYPYIL 369 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAH 610 F+D N G ++ SNLC+EI + CNLGS+N+ Sbjct: 370 FEDTANA--VNPVAGRINMSNLCSEILQVNEASTFKDDLSYAHLGSDISCNLGSLNIARA 427 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D L ST+ TA+R L V +++ ++ ++ N AIGLG M L Sbjct: 428 -----MDGGDLGSTVETAIRALTAVSEMSAIVSVPSVRRGNDESHAIGLGQMNLHGFLAR 482 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGL 728 I Y SPEA++ + + +H + AS +A+ERG ++ F+ S + G F + Sbjct: 483 ELIHYGSPEAIDFTNIYFCIVLYHCLRASNAMARERGVSFKGFEDSQYASGAFFDKYVEK 542 Query: 729 LAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 ++ ++ +R W LK V T G+ N N A+ PT +I+ I + Sbjct: 543 DWLPDTERVVALFEKFGIHIPTRAEWVALKDAVMTDGLLNRNLQAVPPTGSISYINNSTS 602 Query: 781 SIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + ++ G F+ N+ Sbjct: 603 SIHPIVSKIEIRKEGKIGRVYYPAPFMNND------------------------------ 632 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898 + + A+EI P LI++ + + +DQ SL L+ + + + ++ AW G+K Sbjct: 633 -NLEYYRDAYEIGPEALIDTYAAATQHVDQGLSLTLFFPDTATTRDVNKAQIYAWKKGIK 691 Query: 899 TTYYLR 904 T YY+R Sbjct: 692 TIYYVR 697 >gi|239622881|ref|ZP_04665912.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514878|gb|EEQ54745.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 731 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 162/739 (21%), Positives = 283/739 (38%), Gaps = 78/739 (10%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255 ++ + +Y + A L + ++ Y AT+ + E Sbjct: 15 ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASTAER 74 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 I + L + ++ +LG Y Y L R+ Sbjct: 75 LEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + F R A E++A+E+ + + + F +TPT N G + SCFL Sbjct: 135 L-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I + L+K GG+ + +R LGA I +S GVIP +K+ D+ Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDS 253 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R + IPD+ + Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 Q A LFSP D+ +YGK F + ++ + I A + + + Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370 Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 FE+G+P+I F+D N +P + V + E + CNLG Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ L T+ TA+R L +V + + + + +++N AIGLG M Sbjct: 431 SLNIAKTMDG------GLGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y S E ++ D +++HA AS LA E ++SF S + + Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544 Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + R L + W+ L+ + G+ N N A+ Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWETLRDAILKDGIYNQNLQAVP 604 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +++ N+ Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + G + A+EI ++++ + + +DQ SL L+ + + + L Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712 >gi|313820320|gb|EFS58034.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL036PA1] gi|313822873|gb|EFS60587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL036PA2] gi|314925207|gb|EFS89038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL036PA3] Length = 950 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + V Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + +GK F + KV + A L+ K+ +E P + + Sbjct: 288 SDAFMAAVEHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623 D N + G +++SN C+E S + + CNL S+NLL N+ FD +K Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E K+ R +G+G + L L + Y S +A Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739 ++ + S ELA G Y + + + ++ A+ Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 ++ WD++ K T G RN+ +APT TI + + I+P + + + K G Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851 +VN + LK + + + +GS+ + + ++ A I Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 PM + + Q ++ A S + L E + + + +Y + W +GLK R Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 S K + + A P +P S Sbjct: 696 QPLSEAKKKEEEEKAKPEVRIEYRPRRQRLPKS 728 >gi|289425582|ref|ZP_06427359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes SK187] gi|289427199|ref|ZP_06428915.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes J165] gi|295130586|ref|YP_003581249.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes SK137] gi|289154560|gb|EFD03248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes SK187] gi|289159668|gb|EFD07856.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes J165] gi|291375818|gb|ADD99672.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes SK137] gi|313772155|gb|EFS38121.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL074PA1] gi|313792149|gb|EFS40250.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL110PA1] gi|313810019|gb|EFS47740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL083PA1] gi|313818553|gb|EFS56267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL046PA2] gi|313825195|gb|EFS62909.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL063PA1] gi|313830347|gb|EFS68061.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL007PA1] gi|313833721|gb|EFS71435.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL056PA1] gi|313838725|gb|EFS76439.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL086PA1] gi|314960010|gb|EFT04112.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL002PA2] gi|314962807|gb|EFT06907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL082PA1] gi|314973352|gb|EFT17448.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL053PA1] gi|314976029|gb|EFT20124.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL045PA1] gi|314978432|gb|EFT22526.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL072PA2] gi|314983949|gb|EFT28041.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL005PA1] gi|314988133|gb|EFT32224.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL005PA2] gi|314989937|gb|EFT34028.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL005PA3] gi|315078024|gb|EFT50075.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL053PA2] gi|315080649|gb|EFT52625.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL078PA1] gi|315084321|gb|EFT56297.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL027PA2] gi|315085663|gb|EFT57639.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL002PA3] gi|315088915|gb|EFT60891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL072PA1] gi|315095897|gb|EFT67873.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL038PA1] gi|327326179|gb|EGE67969.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes HL096PA2] gi|327331946|gb|EGE73683.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes HL096PA3] gi|327443147|gb|EGE89801.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL013PA2] gi|327445932|gb|EGE92586.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL043PA2] gi|327448088|gb|EGE94742.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL043PA1] gi|327453133|gb|EGE99787.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL092PA1] gi|328753478|gb|EGF67094.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL020PA1] gi|328760860|gb|EGF74426.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes HL099PA1] gi|332675426|gb|AEE72242.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes 266] Length = 950 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + V Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + +GK F + KV + A L+ K+ +E P + + Sbjct: 288 SDAFMAAVEHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623 D N + G +++SN C+E S + + CNL S+NLL N+ FD +K Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E K+ R +G+G + L L + Y S +A Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739 ++ + S ELA G Y + + + ++ A+ Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 ++ WD++ K T G RN+ +APT TI + + I+P + + + K G Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851 +VN + LK + + + +GS+ + + ++ A I Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 PM + + Q ++ A S + L E + + + +Y + W +GLK R Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 S K + + A P +P S Sbjct: 696 QPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728 >gi|313807511|gb|EFS45998.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL087PA2] Length = 950 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + V Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + +GK F + KV + A L+ K+ +E P + + Sbjct: 288 SDAFMAAVEHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623 D N + G +++SN C+E S + + CNL S+NLL N+ FD +K Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E K+ R +G+G + L L + Y S +A Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739 ++ + S ELA G Y + + + ++ A+ Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 ++ WD++ K T G RN+ +APT TI + + I+P + + + K G Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851 +VN + LK + + + +GS+ + + ++ A I Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 PM + + Q ++ A S + L E + + + +Y + W +GLK R Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 S K + + A P +P S Sbjct: 696 QPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728 >gi|184200806|ref|YP_001855013.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria rhizophila DC2201] gi|183581036|dbj|BAG29507.1| ribonucleoside-diphosphate reductase alpha subunit [Kocuria rhizophila DC2201] Length = 719 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 176/743 (23%), Positives = 295/743 (39%), Gaps = 86/743 (11%) Query: 190 YDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 Y GL +L L L + E N R + + + H+++ Sbjct: 16 YRGLGYHELNALL-----NLYDAEGNIQFEADRQAARQYFLQ-----HVNKNTVFFHDLE 65 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 E ++ + E + L+ + +LG Y Y L Sbjct: 66 ----EKLKYLVDHQYYEAEVLEKYSVEFIKELSKQAYGYKFRFQTFLGAFKFYTSYTLKT 121 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + RV M E A + S F +TPT N+G + Sbjct: 122 FDGQRYLERFED---RVVMVSLYLADGDETLAKRLVGEIISGRFQPATPTFLNAGKKQRG 178 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL D++ I + L+K GG+ T +R GA I +S GVIP Sbjct: 179 ELVSCFLVRFEDNMESIGRNINSALQLSKRGGGVAFALTNLRESGAPIKMIENQSSGVIP 238 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 239 VMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILNFLDTKRENADEKIRIKTLSLGVVIP 298 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545 D+ + +N LFSP D+ +YG F + + + ++ + I+A Sbjct: 299 DITFELAKKNQDMYLFSP---YDVERIYGMPFADVNVSEKYHEMVDDSRITKTKINAREF 355 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593 ++ + + FE+G+P+I F+D N +P G + SNLC+EI + Sbjct: 356 FQTVAEVQFESGYPYIMFEDTVNRANPI--DGKIIMSNLCSEILQVSEPSVYNEDLTYAE 413 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652 + CNLGS+N+ + ++I TA+R L V D+ N ++ ++ N Sbjct: 414 VGKDISCNLGSMNIAMAMESP-----DFGASIETAIRGLTAVSDMSNIDSVPSIRRGNQM 468 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711 A+GLG M L H+ Y S E V+ + +++HAI AS +A+ER ++ F Sbjct: 469 SHAVGLGQMNLHGYLAKEHVFYGSEEGVDFTNMYFYAVTYHAIRASNLIAKERGESFVGF 528 Query: 712 KGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 + S + G + I E + + W EL+++V GM N N Sbjct: 529 EKSDYANGTYFDKYIDGTWEPATARVRELFARAGVALPTAQDWRELREKVMADGMYNQNL 588 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I + SI P + ++ G F+ Sbjct: 589 QAVPPTGSISYINNSTSSIHPIASRIEIRKEGKLGRVYYPAPFM---------------- 632 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 D+ + A+EI +I++ + + +DQ SL L+ + + Sbjct: 633 ---------------NDENLEYFQDAYEIGFEKIIDTYAAATQHVDQGLSLTLFFKDTAT 677 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY R Sbjct: 678 TRDINRAQIYAWRKGIKTMYYSR 700 >gi|327330249|gb|EGE71998.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes HL097PA1] Length = 950 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 134/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL N+ FD +K + + +D I E K+ R +G+G Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G Y + + Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ A+ ++ WD++ K T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835 I+P + + + K G +VN + LK + + + +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616 Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 617 DLDEAHYEVFDCAMGTRFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYME 676 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S K + + A P +P S Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728 >gi|262171414|ref|ZP_06039092.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus MB-451] gi|261892490|gb|EEY38476.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit [Vibrio mimicus MB-451] Length = 722 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 169/743 (22%), Positives = 301/743 (40%), Gaps = 89/743 (11%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S DL+ + + ++++E + K R + + + +K + Q Sbjct: 18 SRKDLDFHALNAMLNILDREGQIQFDADKRAVRQYFLQHVNQNTVFFHHLDEKLDYLLEQ 77 Query: 250 CLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 Y + F Y E + F K+ F L+ Sbjct: 78 GYYDAQVFAPYSREFLHHIWQSAFTQKFRFPSFLGAYKF-----FTAYALKT-------R 125 Query: 309 INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 +E + + A+ LA + + + + S F +TPT N+G + + Sbjct: 126 DGKRYLERFEDRVVMTALTLARGDEAFAMQLMR---EILSGRFQPATPTFINAGKKSRGE 182 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L SCFL + D++ I A+ + L++ GG+ + +R GA I +S GVIP Sbjct: 183 LISCFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREYGAPIKEIENQSSGVIPV 242 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ +PD Sbjct: 243 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVIVPD 302 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVAL 545 + + +N LFSP D+ +YG F E Y+ + EI+ + I+A L Sbjct: 303 ITFELAKKNKEMYLFSP---YDVERVYGVPFADISVNEKYDEMVENAEIRKTK-INAREL 358 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593 ++ + + FE+G+P++ F+D N +P G + SNLC+EI Sbjct: 359 FQTIAEIQFESGYPYLMFEDTVNRANPI--AGRITMSNLCSEILQVSEASQFNDDLSYQH 416 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHT 652 CNLGS+N+ D L ++ AVR L V ++ ++ +K N Sbjct: 417 LGTDISCNLGSLNIAKT-----MDGQALGQSVEIAVRALTAVSEMSQIDSVPSVRKGNDQ 471 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSF 711 AIGLG M L I Y S E ++ + I+FH + AS ++A+E + + F Sbjct: 472 SHAIGLGQMNLHGFLAREGIHYGSEEGIDFTNCYFAAIAFHCLRASNQIAREKQQTFHDF 531 Query: 712 KGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 + S + G + + ++ + + A+ ++ W +LK+ V G+ N N Sbjct: 532 ERSRYASGEYFTPYLQESFAPKTPVVKALFERFAVELPTQEDWQQLKEAVMRDGLYNRNL 591 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I + SI P + ++ G ++ N+ Sbjct: 592 QAVPPTGSISYINYSTSSIHPITAKIEIRKEGQVGRVYYPAPYMTND------------- 638 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + A+EI P +I++ + + +DQ SL L+ + Sbjct: 639 ------------------NLNYYQDAYEIGPYKIIDTYAAATRHVDQGLSLTLFFPASAT 680 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 681 TRDINKAQIYAWKKGIKTLYYVR 703 >gi|283786770|ref|YP_003366635.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter rodentium ICC168] gi|282950224|emb|CBG89860.1| ribonucleoside-diphosphate reductase 2 alpha chain [Citrobacter rodentium ICC168] Length = 714 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 177/733 (24%), Positives = 303/733 (41%), Gaps = 75/733 (10%) Query: 205 SSRTLIEKEPNYAKV---------TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 ++ + + P+Y + R EK RE + + + Sbjct: 5 TAERVAQATPDYHALNAMLNLYDKAGRIQFEK-DREAVDAFFAAHVRPHSVTFSSQQAR- 62 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 + EG + ++ L +LG Y Y L +G R Sbjct: 63 LETLVREGYYDESVLNRYPRAFVIDLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY 122 Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 E + + VA+ LA + E A + + + + F +TPT N G + +L SCF Sbjct: 123 LEDFEDRVVMVALTLARGD---ETLARQLTDEILAGRFQPATPTFLNCGKQQRGELVSCF 179 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 LLRIEDNMESIGRAVNAALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRL 299 Query: 493 VTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +NA LFSP +V ++ Y+ A + + I+A ++++ Sbjct: 300 AKENAQMALFSPYDVERIYGKPFGDIAVSDLYDQLVADARVRK----KYINARDFFQRLA 355 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603 + FE+G+P+I F+D N SP G ++ SNLC+EI +S+ + Sbjct: 356 EIQFESGYPYIMFEDTVNRASPV--AGRINMSNLCSEILQVNSASTYDDNLDYAQTGHDI 413 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + + D T+ TA+R L V D+ + ++ + N AIGLG M Sbjct: 414 SCNLGSLNIAHTMDSPDFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 473 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y SPE ++ + I++HA++ S++LA+ER A++ FK S + G + Sbjct: 474 LHGYLAREGIAYGSPEGLDFTNLYFYTITWHALNTSMKLARERGQAFAGFKQSRYASGEY 533 Query: 722 -----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 D +VR A + +R W +L+ V G+ N N A+ PT +I+ Sbjct: 534 FSQYLQGDWQPKTEKVRALFARSGITLPTREMWRQLRDDVMRYGIYNQNLQAVPPTGSIS 593 Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ +G F+ N Sbjct: 594 YINHATSSIHPIVSKVEIRKEGKTGRVYYPAPFMTN------------------------ 629 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + ++ A+EI P +I++ + + +DQ SL L+ + + + ++ Sbjct: 630 -------ENLDMYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINRAQIY 682 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 683 AWRKGIKTLYYIR 695 >gi|254468285|ref|ZP_05081691.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [beta proteobacterium KB13] gi|207087095|gb|EDZ64378.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [beta proteobacterium KB13] Length = 719 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 142/644 (22%), Positives = 258/644 (40%), Gaps = 59/644 (9%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 +G+ + E Q + RVA LA E +K E + + + N Sbjct: 31 KKYRLKKKDGNYVDETIQDTYERVAEALADVEPSNKKEWKENFLWALQHGAIPAGRITSN 90 Query: 361 SGTRHPQL----SSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 +G + + +C ++ V D + I + E + K G+G +++ +R GA + Sbjct: 91 AGAKEHKPATSTINCTVSGAVQDSMTDILDKVHEAGLTLKAGCGIGYEFSTLRPKGAFVA 150 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 G + G + F+ + + V+ G R+GA A + H DV +F+ ++ + R Sbjct: 151 GAGAYTSGPLSFMDIYDRMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKR----EDGR 206 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDLYGKEF--EIAYE 523 N + I FM+ V ++ W L P + D +++ + Y Sbjct: 207 LRQFNLSCLITKEFMEAVKSDSDWKLAFPVTEKEAKQDNLDFKDSEKTVWRDWPVKEKYI 266 Query: 524 NYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E D G++ KV+ I A LW ++ ++ P D N + + + Sbjct: 267 VKESGKDAGKVACKVYSTIKAKRLWDVIMASTYDYAEPGFILIDRVNEMNNNWFCENIRA 326 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVI 636 +N C E L E C LGS+NL N FD+D+ + R+LDNV+ Sbjct: 327 TNPCGEQPLP----EYGACLLGSVNLTMFVKNPFTDDAYFDWDEYKKVVSIFTRMLDNVV 382 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 +IN + K + R G+G +G S L ++ I Y PE+++ +E ++ Sbjct: 383 EINGLPLGKQRDEIMQKRRHGMGYLGLGSTLTMMKIKYGDPESIKFTEEVTRILAEEGWK 442 Query: 697 ASVELAQERGAYSSFKG-------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---W 746 +ELA+E+G+ + L + D I + +V ++ M + S+ Sbjct: 443 VGIELAKEKGSAPIMEELFEITEQMLQMRPEMKADGIKVGDKVAGKVLMGKYSKYMQQFP 502 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM---SGDFTV 801 +EL+ + G+R S+ +IAPT TI+ S I+PS+ + Y ++ + Sbjct: 503 EELRNEIAENGVRFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVIREGKKTKEK 562 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 V+ F L R L ++ + + D + L + I ++ + Sbjct: 563 VDVFSFELLAYRSLINDKAMPFSEKED----------EVLPDYFIDSSTIKTKNHVDIQA 612 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QKWID + S + + + + IY A+ GLK R Sbjct: 613 AAQKWIDSSISKTINVPTDYDFEDFKEIYMYAYEKGLKGCTTFR 656 >gi|229493417|ref|ZP_04387206.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus erythropolis SK121] gi|229319733|gb|EEN85565.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodococcus erythropolis SK121] Length = 727 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 173/680 (25%), Positives = 287/680 (42%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +EE + + + +L + ++ +LG Y Y L +G Sbjct: 73 DEKLDYLVEENYYEPEVLDQYSRTFVKFLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 132 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA E AVE + + + F +TPT NSG + + Sbjct: 133 KRYLERFEDRVCMVALTLAAG---NEDLAVELVDEIIAGRFQPATPTFLNSGKKQRGEPV 189 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T VR GA I +S GVIP +K Sbjct: 190 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 249 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 250 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 309 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548 + +N LFSP D+ +YG F + + + ++ + KI A ++ Sbjct: 310 FELAKKNEDMYLFSP---YDVERIYGVPFSDINVSEKYYEMVDDKRIRKSKIKAREFFQT 366 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI S + Sbjct: 367 VAELQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYSKVGK 424 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI ++R L V D + +++ ++ N+ A Sbjct: 425 DISCNLGSLNIAKT-----MDSPDFAKTIEVSIRGLTAVSDQTHIYSVPSIEQGNNDSHA 479 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGS 714 IGLG M L I Y S E ++ + + FHA+ AS ++A ERG+Y F S Sbjct: 480 IGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVLFHALRASNKIAIERGSYFKGFPES 539 Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F E + ++ ++ W ELK V+ G+ N N A+ Sbjct: 540 KYASGEFFDKYTDQAWEPATDKVRGLFADAKLHIPTQDDWRELKASVQKHGIYNQNLQAV 599 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G +L N+ Sbjct: 600 PPTGSISYINYSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 643 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI ++++ + + +DQ SL L+ + + + Sbjct: 644 ---------------NLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRD 688 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 689 INKAQIYAWRKGIKTLYYIR 708 >gi|170288626|ref|YP_001738864.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga sp. RQ2] gi|281412178|ref|YP_003346257.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga naphthophila RKU-10] gi|170176129|gb|ACB09181.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga sp. RQ2] gi|281373281|gb|ADA66843.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga naphthophila RKU-10] Length = 827 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 152/628 (24%), Positives = 263/628 (41%), Gaps = 87/628 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN---------------------------SGTRHPQL 368 ++ F+ +L + F+ ++PTLFN S L Sbjct: 72 KEWEDTFFRVLKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHML 131 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 S+CF+ V D + IF A++E A++ K GG+G++++ +R G+ + GT+GK+ G + F+ Sbjct: 132 SACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFM 191 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPD 487 V N V QG +R+GA+ L H D+EEF+D +K + +++ Sbjct: 192 HVFNSAISVVKQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGF---- 247 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIKVFRKISAVALW 546 M + YE E + + +K+ L+ Sbjct: 248 -PMDKKEIL-----------------------KLYEEDGELELSHPRSTIRKKVKIRELF 283 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 RK+ T +++G P + F N P ++S+N C EI + CNLGSI+ Sbjct: 284 RKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSID 339 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + + N D + L ++ AVR LDNVID+N I+K K+ R +GLG+MGF Sbjct: 340 VAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADL 399 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L+ L IPY S EA + A M FI+ A S EL +E+G + + S + Sbjct: 400 LYKLEIPYNSQEARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRY---------- 449 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + AM ++ ++ RN + IAPT +I+NI S ++P++ Sbjct: 450 -RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNF 508 Query: 787 QNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKY---HDGSIGNIERIP 838 Y + D VN L +L + ++ ++ GS+ +I +P Sbjct: 509 LLAYTRFVTKEDGTKEPLLYVNQVLREKL------NPEILKKIEKELIEKGSLKDIPDVP 562 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897 + +KK+ A +IDPM + Q+++D S + + + + +Y +A + Sbjct: 563 EKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNV 622 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNA 925 + R S + + Sbjct: 623 RGITVYRDGSLQTQVLTKALKTPEAPKV 650 >gi|23335915|ref|ZP_00121146.1| COG0209: Ribonucleotide reductase, alpha subunit [Bifidobacterium longum DJO10A] gi|23465252|ref|NP_695855.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum NCC2705] gi|189440324|ref|YP_001955405.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum DJO10A] gi|227547059|ref|ZP_03977108.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|296455121|ref|YP_003662265.1| ribonucleoside-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. longum JDM301] gi|312133658|ref|YP_004000997.1| nrda [Bifidobacterium longum subsp. longum BBMN68] gi|322690139|ref|YP_004209873.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium longum subsp. infantis 157F] gi|23325883|gb|AAN24491.1| NrdE [Bifidobacterium longum NCC2705] gi|189428759|gb|ACD98907.1| Ribonucleotide reductase alpha subunit [Bifidobacterium longum DJO10A] gi|227212476|gb|EEI80365.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517760|emb|CBK71376.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Bifidobacterium longum subsp. longum F8] gi|296184553|gb|ADH01435.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium longum subsp. longum JDM301] gi|311772920|gb|ADQ02408.1| NrdA [Bifidobacterium longum subsp. longum BBMN68] gi|320461475|dbj|BAJ72095.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. infantis 157F] Length = 731 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 162/739 (21%), Positives = 283/739 (38%), Gaps = 78/739 (10%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255 ++ + +Y + A L + ++ Y AT+ + E Sbjct: 15 ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASTAER 74 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 I + L + ++ +LG Y Y L R+ Sbjct: 75 LEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + F R A E++A+E+ + + + F +TPT N G + SCFL Sbjct: 135 L-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I + L+K GG+ + +R LGA I +S GVIP +K+ D+ Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDS 253 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R + IPD+ + Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 Q A LFSP D+ +YGK F + ++ + I A + + + Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370 Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 FE+G+P+I F+D N +P + V + E + CNLG Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ L T+ TA+R L +V + + + + +++N AIGLG M Sbjct: 431 SLNIAKAMDG------GLGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y S E ++ D +++HA AS LA E ++SF S + + Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544 Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + R L + W+ L+ + G+ N N A+ Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQAVP 604 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +++ N+ Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + G + A+EI ++++ + + +DQ SL L+ + + + L Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712 >gi|15642893|ref|NP_227934.1| ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8] gi|4980610|gb|AAD35212.1|AE001698_1 ribonucleotide reductase, B12-dependent [Thermotoga maritima MSB8] gi|2440216|emb|CAA73377.1| ribonucleotide reductase [Thermotoga maritima MSB8] Length = 827 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 147/576 (25%), Positives = 247/576 (42%), Gaps = 54/576 (9%) Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 ++ S LS+CF+ V D + IF A++E A++ K GG+G++++ +R G+ + GT Sbjct: 121 IYRSRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGT 180 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRT 476 +GK+ G + F+ V N V QG +R+GA+ L H D+EEF+D +K + Sbjct: 181 HGKASGPVSFMHVFNSAISVVKQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNF 240 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIK 535 +++ M + YE E + Sbjct: 241 FNLSVGF-----PMDKKEIL-----------------------KLYEEDGELELSHPRST 272 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 + +K+ L+RK+ T +++G P + F N P ++S+N C EI Sbjct: 273 IRKKVKIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLS 328 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + CNLGSI++ + N D + L ++ AVR LDNVID+N I+K K+ R Sbjct: 329 DYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRR 388 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG+MGF L+ L IPY S EA + A M FI+ HA S EL +E+G + + S Sbjct: 389 LGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISR 448 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + + AM ++ ++ RN + IAPT +I+NI Sbjct: 449 Y-----------RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNI 497 Query: 776 CGVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 S ++P++ Y + D VN L +L L I GS Sbjct: 498 ADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPEIL---KRIEKELIEKGS 554 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 + +I +P+ +KK+ A +IDPM + Q+++D S + + + + +Y Sbjct: 555 LKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVY 614 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 +A ++ R S + + Sbjct: 615 LEALRTNVRGITVYRDGSLQTQVLTKALKTPEAPKV 650 >gi|169630494|ref|YP_001704143.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium abscessus ATCC 19977] gi|169242461|emb|CAM63489.1| Ribonucleoside-diphosphate reductase alpha subunit [Mycobacterium abscessus] Length = 712 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 179/746 (23%), Positives = 304/746 (40%), Gaps = 91/746 (12%) Query: 192 GLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHE 247 G + +L+ + + L + E + AR + + + + +K + Sbjct: 6 GSAHGELDYHALNAMLNLYDAEGKIQFDKDAAAARQYFLQHVNQNTVFFHNQDEKLDY-- 63 Query: 248 MQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFL 307 IE+ R + + + L + ++ +LG Y Y L Sbjct: 64 -----------LIEKEYYEREVLDQYSRNFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTL 112 Query: 308 H-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 +G R E + + VA+ LA + + A + + + F +TPT NSG + Sbjct: 113 KTFDGKRYLERFEDRVVMVALTLAAGD---LQLAEKLVDEIIDGRFQPATPTFLNSGKKQ 169 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + SCFL + D++ I ++ L+K GG+ T +R GA I +S GV Sbjct: 170 RGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGV 229 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 230 IPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVV 289 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISA 542 IPD+ + +N LFSP D+ YG F E Y D G+I+ + I A Sbjct: 290 IPDITFELAKKNEDMYLFSP---YDVERTYGVPFADINVTEKYYEMVDNGQIRKTK-IKA 345 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------ 590 ++ + + FE+G+P+I ++D N +P G + SNLC+EI Sbjct: 346 REFFQTLAELQFESGYPYIMYEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLS 403 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKS 649 + + CNLGS+N+ D A TI A+R L V D + ++ ++ Sbjct: 404 YAKVGKDISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIWSVPSIEQG 458 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-Y 708 N+ AIGLG M L I Y S E V+ + + +HA+ AS +A ERG + Sbjct: 459 NNDSHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVLYHALRASNRIAIERGTKF 518 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRN 760 F S + G F + E + + + ++ W LK+ V+ G+ N Sbjct: 519 GGFDRSKYASGEFFDKYTDQVWEPKTEKVRQLFADAGIRIPTQDDWLRLKESVQQHGIYN 578 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEA 819 N A+ PT +I+ I + SI P + ++ G +L N+ Sbjct: 579 QNLQAVPPTGSISYINHSTSSIHPVASKIEIRKEGKIGRAYYPAPYLTND---------- 628 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 + + A+EI +I++ + + +DQ SL L+ + Sbjct: 629 ---------------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKD 667 Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLR 904 S + ++ AW G+KT YY+R Sbjct: 668 TASTRDVNKAQIYAWRKGIKTLYYIR 693 >gi|313801898|gb|EFS43132.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL110PA2] Length = 950 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 130/633 (20%), Positives = 236/633 (37%), Gaps = 29/633 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + V Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + +GK F + KV + A L+ K+ +E P + + Sbjct: 288 SDAFMAAVGHGKPFGLMSRTE-------PDKVLDTVDAKELFGKIAQAAWECADPGLQYD 340 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623 D N + G +++SN C+E S + + CNL S+NLL N+ FD +K Sbjct: 341 DTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASLNLLKFLDENDHFDVEKFTR 396 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E K+ R +G+G + L L + Y S +A Sbjct: 397 AVELVITAMDISICFADFPTEAISKTTRNFRQLGIGYANLGALLMALGLGYDSDGGRALA 456 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMN 739 ++ + S ELA G Y + + + ++ A+ Sbjct: 457 AAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMARHRDANRQVHPLHNNDTAVL 516 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 ++ WD++ K T G RN+ +APT TI + + I+P + + + K G Sbjct: 517 TAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKMVGGG 576 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERIPDDLKKIHATAFE---I 851 +VN + LK + + + +GS+ + + ++ A I Sbjct: 577 SMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAPDLDEAHYEVFDCAMGTRFI 635 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 PM + + Q ++ A S + L E + + + +Y + W +GLK R Sbjct: 636 APMGHVRMMAAVQPFLSGAISKTVNLPESSTVEDIAGVYMEGWKLGLKALAVYRDNCKVG 695 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 S K + + A P +P S Sbjct: 696 QPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728 >gi|309812682|ref|ZP_07706426.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dermacoccus sp. Ellin185] gi|308433377|gb|EFP57265.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Dermacoccus sp. Ellin185] Length = 975 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 124/614 (20%), Positives = 221/614 (35%), Gaps = 31/614 (5%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385 G + + E E L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 110 GYFATDEDAEIFEHELTYALLHQVFSFNSPVWFNVGTASPQQVSACFILSVEDSMDSILN 169 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 170 WYKEEGFIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 228 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + V Sbjct: 229 RAAKMVVLDVDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 288 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 ++ + G F + R +V + A L+ K+ +E P + + Sbjct: 289 NDEFMQAVVDGGSFGLR--------ARDTGEVIETVDARELFDKINKAAWECADPGVQYD 340 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 D N G + +SN C+E S + + CNL S+NLL + FD A Sbjct: 341 DTINAWHTNPETGRITASNPCSEYM----SLDNSSCNLASLNLLKFLKEDDTFDAATFAK 396 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E K+ +R +G+G + L Y S +A Sbjct: 397 VVELVITAMDISICFADFPTESIGKTTVDYRQLGIGYANLGALLMATGHGYDSDGGRALA 456 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 ++ A S E+A G Y+ + + E+ M + Sbjct: 457 ASITSLLTGAAYKRSAEMAAVVGPYAGYAQNSQAHNRVMRKHRAANDELSSHKDMGAMAS 516 Query: 744 LP-------WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794 W ++ + G RN+ +APT TI + + I+P + + + K Sbjct: 517 DIHALATKAWADVVTLGEKNGFRNAQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLV 576 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF--- 849 G +VN + LK+ DE + + + G + + + + +I A Sbjct: 577 GGGSMQIVNQTIPRALKKLGYQDEQIEAIVEHIAEKGHVIDAPGLKPEHYEIFDCAMGAR 636 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I PM + + Q ++ A S + L E S + ++ + W +GLK R Sbjct: 637 AISPMGHVRMMAACQPFLSGAISKTVNLPETASVDDIAEVHLEGWKLGLKAIAVYRDNCK 696 Query: 909 TSVEKSTLKGVDGK 922 S K Sbjct: 697 VGQPLSDGKAEKKS 710 >gi|218547808|ref|YP_002381599.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ATCC 35469] gi|218355349|emb|CAQ87956.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia fergusonii ATCC 35469] Length = 714 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 176/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M + Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDKTL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G R +L SCFL + D++ I A+ L+K Sbjct: 145 AKQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ AV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVEIAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V DI + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNRT-- 741 I++HA+ S+ LA+ER ++ FK S + G + EL + Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSSIT 559 Query: 742 --SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|209551074|ref|YP_002282991.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536830|gb|ACI56765.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 734 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 185/739 (25%), Positives = 298/739 (40%), Gaps = 85/739 (11%) Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 L+ + + L + E R L+K R + + T L + Sbjct: 32 EALDYHALNAMLNLYDDE-------GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKL 83 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313 E + +L + +F Y R F F +LG Y Y L +G R Sbjct: 84 DYLVTEGYYEQEVLDQYSFNFVRDLFDQA--YARKFRFPTFLGAFKYYTSYTLKTFDGKR 141 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + VA+ LA + E A + + + S +TPT N+G + +L SC Sbjct: 142 YLERYEDRICMVALSLARGD---EALARDMVDEIISGRLQPATPTFLNAGKKQRGELVSC 198 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL V D++ I ++ L+K GG+ T +R A I +S G+IP +K+ Sbjct: 199 FLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREASAPIKQIENQSSGIIPVMKLL 258 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ +PD+ + Sbjct: 259 EDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDISFE 318 Query: 492 RVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 N LFSP +V ++ Y A + +KI A ++ + Sbjct: 319 LARNNEDMYLFSPYDVERIYGVPFTEISVTEKYREMVADARISK----KKIKAREFFQVI 374 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597 + FE+G+P+I F+D N +P G + SNLC+EI S + E Sbjct: 375 AEIQFESGYPYIMFEDTVNRANPI--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKD 432 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ A D TI T++R L V D+ + ++ +K N AI Sbjct: 433 ISCNLGSLNIAAA-----MDSADFGKTIETSIRALTAVSDMSHIASVPSIEKGNDESHAI 487 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715 GLG M L I Y S E V+ + +++HAI AS LA ERG + F+ S Sbjct: 488 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGTSFKGFENSK 547 Query: 716 WDQGVFP-----IDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + + +VR + ++ W LK V T G+ N N A+ Sbjct: 548 YASGEYFDKYTEQEWQPATEKVRALFDNAGIPVPTQEDWLALKTAVMTSGLYNQNLQAVP 607 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G F+ N+ Sbjct: 608 PTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPFMTND----------------- 650 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 651 --------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 696 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 697 NKAQIYAWKKGIKTIYYIR 715 >gi|322692091|ref|YP_004221661.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456947|dbj|BAJ67569.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 731 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 162/739 (21%), Positives = 283/739 (38%), Gaps = 78/739 (10%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255 ++ + +Y + A L + ++ Y AT+ + E Sbjct: 15 ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNSKRFASAAER 74 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 I + L + ++ +LG Y Y L R+ Sbjct: 75 LEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + F R A E++A+E+ + + + F +TPT N G + SCFL Sbjct: 135 L-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I + L+K GG+ + +R LGA I +S GVIP +K+ D+ Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKLLEDS 253 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R + IPD+ + Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 Q A LFSP D+ +YGK F + ++ + I A + + + Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370 Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 FE+G+P+I F+D N +P + V + E + CNLG Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ L T+ TA+R L +V + + + + +++N AIGLG M Sbjct: 431 SLNIAKAMDG------GLGHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y S E ++ D +++HA AS LA E ++SF S + + Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544 Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + R L + W+ L+ + G+ N N A+ Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQAVP 604 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +++ N+ Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + G + A+EI ++++ + + +DQ SL L+ + + + L Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712 >gi|148269941|ref|YP_001244401.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga petrophila RKU-1] gi|147735485|gb|ABQ46825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga petrophila RKU-1] Length = 827 Score = 315 bits (806), Expect = 3e-83, Method: Composition-based stats. Identities = 152/628 (24%), Positives = 263/628 (41%), Gaps = 87/628 (13%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFN---------------------------SGTRHPQL 368 ++ F+ +L + F+ ++PTLFN S L Sbjct: 72 KEWEDTFFRVLKARIFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHML 131 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 S+CF+ V D + IF A++E A++ K GG+G++++ +R G+ + GT+GK+ G + F+ Sbjct: 132 SACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFM 191 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHDMNTANWIPD 487 V N V QG +R+GA+ L H D+EEF+D +K + +++ Sbjct: 192 HVFNSAISVVKQGYRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGF---- 247 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIKVFRKISAVALW 546 M + YE E + + +K+ L+ Sbjct: 248 -PMDKKEIL-----------------------KLYEEDGELELSHPRSTIRKKVKIRELF 283 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 RK+ T +++G P + F N P ++S+N C EI + CNLGSI+ Sbjct: 284 RKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSID 339 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + + N D + L ++ AVR LDNVID+N I+K K+ R +GLG+MGF Sbjct: 340 VAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADL 399 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L+ L IPY S EA + A M FI+ A S EL +E+G + + S + Sbjct: 400 LYKLEIPYNSQEARDFAANLMAFIALQAHRTSYELGKEKGNFPLLEISRY---------- 449 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + AM ++ ++ RN + IAPT +I+NI S ++P++ Sbjct: 450 -RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNF 508 Query: 787 QNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKY---HDGSIGNIERIP 838 Y + D VN L +L + ++ ++ GS+ +I +P Sbjct: 509 LLAYTRFVTKEDGTKEPLLYVNQVLREKL------NPEILKKIEKELIEKGSLKDIPDVP 562 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897 + +KK+ A +IDPM + Q+++D S + + + + +Y +A + Sbjct: 563 EKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNV 622 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNA 925 + R S + + Sbjct: 623 RGITVYRDGSLQTQVLTKALKTPEAPKV 650 >gi|255025076|ref|ZP_05297062.1| ribonucleotide-diphosphate reductase subunit alpha [Listeria monocytogenes FSL J2-003] Length = 624 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 199/621 (32%), Positives = 306/621 (49%), Gaps = 40/621 (6%) Query: 146 KIMMDDG-TLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM--YDGLSESDLETAL 202 I+ D G + F+ RL+ +E+ + + + + + + + +L L Sbjct: 10 YIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYL 69 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I + + P + AR L KL ++ + + Y E Sbjct: 70 IREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYND-----DDKYGSYVGLQESLGE 124 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEMPQAF 320 G+ + + ++ DL+ + E+D F Y GL +L RY + E+PQ Sbjct: 125 RGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQER 184 Query: 321 FMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ +A+ L E ++ K E Y LS+ + +TPTL N+G QLSSCF+ TV D Sbjct: 185 WLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDD 244 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L GI+ + + A ++K+ GG+G VR GA I G G S GVIP++K N+TAV+V Sbjct: 245 SLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSV 304 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+RKGA+ YL+ +H D+E FLDLR N GD R R HD+ TA IPD+FM+ V + Sbjct: 305 DQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGE 364 Query: 499 WTLFSPDEVSDLHDLYGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 W LF P EV Y ++F E + + E + + A+ + ++++ Sbjct: 365 WYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMS 424 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------------- 595 ETG+P++ ++D N +P +H G+V+SSNLCTEI N S Sbjct: 425 QLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQ 484 Query: 596 --ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 + VCNL S+NL + L I VR+LDNVID+N + +A +N + Sbjct: 485 AGDFVVCNLSSVNLGRAVVA---EEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKY 541 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R+IGLG G+ L L +I + S EA + ADE E I++ AI AS +LAQE+GAY FKG Sbjct: 542 RSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKG 601 Query: 714 SLWDQGVFPIDSIGLLAEVRD 734 S W+ G + E ++ Sbjct: 602 SDWNTGEYFARRNYNSPEWQE 622 >gi|197104081|ref|YP_002129458.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum HLK1] gi|196477501|gb|ACG77029.1| Ribonucleotide reductase large subunit [Phenylobacterium zucineum HLK1] Length = 745 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 150/623 (24%), Positives = 243/623 (39%), Gaps = 86/623 (13%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G+ +A + RVA +A E + F + L F F+ + L Sbjct: 15 KYRFAQPDGAGDGSVEATWARVAEAIARAESPKLRRAWRERFEDALGDFQFLPAGRILAG 74 Query: 361 SGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ +PDDL GIF +QE A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARTVTLFNCFVMGAIPDDLEGIFRHVQEAAVTMQQGGGVGMDFSTIRPSGAPVRGVG 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G+R+GA+ L H D+E F+D ++ D R + Sbjct: 135 ADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKR----DGARLRN 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D F++ + ++ W L + V R Sbjct: 191 FNLSVLVTDAFLETLERDGEWPLVF-----------------------------DGVVHR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LWR+++ ++ P + F D N R+ H + +SN C E L Sbjct: 222 TVRAADLWRRLMQGTYDCAEPGVIFIDRVNARNNLAHCETITASNPCGEQMLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL D D+LA+ RTAVR LDNVID++ + + + Sbjct: 278 ACLLGSINLARLVPAPFEPGAELDEDRLAALTRTAVRFLDNVIDVSRYPLPAQEAEAKAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL +PY + E+ +E I A AS ELA E+GA+ + Sbjct: 338 RRIGLGVTGLADALIFCGVPYGGERSAELTRRWLEVIKREAYRASAELAAEKGAFPLY-- 395 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 D + L L E ++ + G+RN +IAPT T + Sbjct: 396 ----------DPVMLETPNLKGLD---------PETRELIARHGLRNGCLTSIAPTGTTS 436 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + G S I+P + Y + + E + D Sbjct: 437 LLAGNVSSGIEPVFAFAYTRKVR---------------QPDGSSREEAVEDYALAVW--K 479 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + + I TA + P + + Q+ +D + S + + + +Y Sbjct: 480 RLHGQAEPPADIFVTAQTLTPADHLRIQAAAQEVVDSSISKTVNCPEDIAFDAFSDVYLD 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKS 914 W G K R + T S Sbjct: 540 GWRRGCKGLTTYRPNAVTGSVLS 562 >gi|310816081|ref|YP_003964045.1| ribonucleoside-diphosphate reductase, alpha subunit [Ketogulonicigenium vulgare Y25] gi|308754816|gb|ADO42745.1| ribonucleoside-diphosphate reductase, alpha subunit [Ketogulonicigenium vulgare Y25] Length = 718 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 173/689 (25%), Positives = 285/689 (41%), Gaps = 76/689 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMD--FDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN 310 E ++EG + E + ++ R F LG Y Y L Sbjct: 64 AEKLDYLVDEGYYEAEVLEQYSTPFKESIWAQAWAHKFRFSTF--LGAFKYYTSYTLKTR 121 Query: 311 --GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 +E + + VA+ LA E A + + + F +TPT N+G + + Sbjct: 122 DGNRYLERFEDRVVMVALALA---RGNEVLARRIVDEVLTGRFQPATPTFLNAGKKSRGE 178 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L SCFL D++ I + L+K GG+ + +R GA I G +S GVIP Sbjct: 179 LVSCFLLRFEDNMESIGRGINSALQLSKRGGGVALLLSNLREAGAPIKGIANQSSGVIPV 238 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD Sbjct: 239 MKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPD 298 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALW 546 + + NA +FSP +V + GK F + + ++ + + A + Sbjct: 299 ITFELAKNNADMYMFSPHDV---EKVTGKAFGDISISEHYYDFVDDPRIHKTKMKARQFF 355 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------- 595 + + + FE+G+P+I F+D N +P G ++ SNLC+EI +S Sbjct: 356 QTLAEVQFESGYPYILFEDTANRANPI--DGRINMSNLCSEILQVNSPSVLNEDLTFADI 413 Query: 596 -ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTH 653 CNLGS+N+ D + + TA+R L V +++ ++ + N Sbjct: 414 GSDISCNLGSLNVAKV-----IDNGDIGVAVETAIRALTAVSEMSAIDSVPSVRAGNDRS 468 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFK 712 AIGLG M L I Y SPEA++ ++FHAI+AS ++A E + F+ Sbjct: 469 HAIGLGQMNLHGFLARERIHYDSPEALDFTRAYFAAVAFHAINASNKIAVERNETFDGFE 528 Query: 713 GSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 S + G F + + EV ++ + S W LK+RV G+ N N Sbjct: 529 KSRYADGSFFDMYLEESFAPTSDKVREVLEKFGVALPSVADWGALKERVMKDGLFNRNLQ 588 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823 AI PT +I+ I + SI P + ++ G +L N Sbjct: 589 AIPPTGSISYINHATASIHPVAAKVEIRKEGKIGRVYYPAPYLTN--------------- 633 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + + + A+EI P +I+ + + +DQ SL L+ + + Sbjct: 634 ----------------ENAEYYRDAYEIGPEAIIDLYAEATRHVDQGLSLTLFFPDTATT 677 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 + ++ AW G+KT YY+R R A Sbjct: 678 RDINKAQIYAWKKGIKTIYYIRLRQAALA 706 >gi|326333208|ref|ZP_08199455.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nocardioidaceae bacterium Broad-1] gi|325948852|gb|EGD40945.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nocardioidaceae bacterium Broad-1] Length = 976 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 128/614 (20%), Positives = 239/614 (38%), Gaps = 27/614 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G E + + E LL + HF ++P FN GT Q+S+CF+ +V D + I Sbjct: 110 GYFASEADADLFGRELTWLLVNQHFAFNSPVWFNVGTESPQQVSACFILSVDDSMDSILN 169 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + + G + G + F++ A+ +A + G R Sbjct: 170 WYKEEGLIFKGGSGAGLNLSRIRSSKELLKSSGGTASGPVSFMRGADASAGTIKSGGATR 229 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + D R D + + + Sbjct: 230 RAAKMVVLDVDHPDIEEFVETKAREEDKIRALRDAGFDMDL------GGKDISSVQYQNA 283 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + D + + E + R GE V +I A L+RK+ +E P + + Sbjct: 284 NNSVRVSDEFMRAVEEGKKFGLRARTTGE--VIEEIDARELFRKISIAAWECADPGLQYD 341 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 D N G + SN C+E S + + CNL S+NLL ++ FD + Sbjct: 342 DTINDWHTNPETGRITGSNPCSEYM----SLDNSSCNLASLNLLKFLKDDDTFDAVRFQQ 397 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +D I E ++ +R +G+G + L + + Y S +A Sbjct: 398 ACEIVFTAMDISICFADFPTEAIGETTRDYRQLGIGYANLGALLMAMGLGYDSEGGRTMA 457 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--- 740 ++ S ELA G Y+ + + VR ++R Sbjct: 458 AAITSLMTGAGYKRSAELAGVVGPYAGYARNAEAHQRVMRKHQAANDAVRSINPVDRNII 517 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 + W ++ + K G RN+ +APT TI + + I+P + + + K G Sbjct: 518 DAATRVWSDVVEIGKVNGFRNAQASLLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 577 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L + E + + + Y G + + + + ++ TA + Sbjct: 578 SMQIVNQVIPRALTKLGYQAEQIEAIVAYIAEHGHVVDAPGLRQEHYEVFDTAMGKRALQ 637 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q ++ A S + L E + + ++ +Y ++W +GLK T R Sbjct: 638 PMGHVRMMAATQPFLSGAISKTVNLPETATVEDIEQVYMESWKLGLKATAIYRDNCKVGQ 697 Query: 912 EKSTLKGVDGKLNA 925 + K + K + Sbjct: 698 PLADGKSENAKKDQ 711 >gi|260599070|ref|YP_003211641.1| ribonucleotide-diphosphate reductase subunit alpha [Cronobacter turicensis z3032] gi|260218247|emb|CBA33171.1| Ribonucleoside-diphosphate reductase 2 subunit alpha [Cronobacter turicensis z3032] Length = 716 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 179/721 (24%), Positives = 290/721 (40%), Gaps = 69/721 (9%) Query: 214 PNYAKVTARFLLE----KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 P+Y + A L +++ E + A +P+ R + Sbjct: 16 PDYHALNAMLNLYDADGRIQFEKDREAVEAFMAAHVQPRSVTFPDTHARLAYLVSEGYYD 75 Query: 270 HESMMDFDLVYLANDLKY-ERD-FAF-EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVA 325 + +D + A RD F F +LG Y Y L +G R + F R Sbjct: 76 ENVLKRYDPDFAAGLFDEAHRDGFTFKTFLGAWKFYTSYTLKTFDGKRY--LEHFPDRAC 133 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 M E A + + S F +TPT N G + +L SCFL + D++ I Sbjct: 134 MVALTLACGDETLARQILKEILSGRFQPATPTFLNGGKQQRGELVSCFLLRIEDNMESIG 193 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 194 RAVNAALQLSKRGGGVAFSLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 253 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + NA LFSP Sbjct: 254 QGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKANAQMALFSP 313 Query: 505 DEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +V ++ Y E R ISA L++++ + FE+G+P+I Sbjct: 314 YDVEHIYGKPFGDISVSEMYTQLVED----ERIRKRYISARELFQRLAEIQFESGYPYIM 369 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQ 615 F+D N +P G ++ SNLC+EI +S+ + S NL + + Sbjct: 370 FEDTVNRANPI--AGRINMSNLCSEILQVNSASTFDENLNYATTGHDISCNLGSLNIAHT 427 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D T+ TAVR L V D+ + ++ + N AIGLG M L I Y Sbjct: 428 MDSPDFGRTVETAVRALTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAY 487 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 SPE ++ + +++HA++ S+ LA+ER + F+ S + G + + R Sbjct: 488 GSPEGLDFTNLYFYTVTWHALNTSMMLARERGERFEGFEASRYASGEYFDKYLTQTWTPR 547 Query: 734 DELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +R W +L+ V G+ N N A+ PT +I+ I + SI P Sbjct: 548 TARVAELFARAGITLPTPEMWRQLRDDVMRHGLYNRNLQAVPPTGSISYINHATSSIHPI 607 Query: 786 YQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + ++ G F+ NE R Sbjct: 608 VSKIEIRKEGKIGRVYYPAPFMTNENLAR------------------------------- 636 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYL 903 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+ Sbjct: 637 YQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYI 696 Query: 904 R 904 R Sbjct: 697 R 697 >gi|301019060|ref|ZP_07183271.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] gi|300399413|gb|EFJ82951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 69-1] Length = 701 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 176/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M + E Sbjct: 74 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALMLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|312140540|ref|YP_004007876.1| ribonucleoside-diphosphate reductase nrde [Rhodococcus equi 103S] gi|311889879|emb|CBH49196.1| ribonucleoside-diphosphate reductase NrdE [Rhodococcus equi 103S] Length = 701 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 171/675 (25%), Positives = 286/675 (42%), Gaps = 62/675 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + E R + + + +L + ++ +LG Y Y L +G Sbjct: 47 DEKLDYLVRENYYEREVLDQYSRNFVKWLIDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 106 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A E + + + F +TPT NSG + + Sbjct: 107 KRYLERFEDRVCMVALTLAAGD---ETLATELVDEIIAGRFQPATPTFLNSGKKQRGEPV 163 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T VR GA I +S GVIP +K Sbjct: 164 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNVREHGAPIKKIENQSSGVIPIMK 223 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 224 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 283 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + KI A ++ Sbjct: 284 FELAKKNEDMYLFSP---YDVERIYGVPFADINVTEKYHEMVDDKRIRKSKIKAREFFQT 340 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCN 601 + + FE+G+P+I F+D N +P G + SNLC+EI T N + V Sbjct: 341 LAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSTFNDDLSYSHVGK 398 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660 S NL + D A TI T++R L V D + +++ ++ N+ AIGLG Sbjct: 399 DISCNLGSLNIALTMDSPDFAKTIETSIRALTAVSDQTHIYSVPSIEQGNNDSHAIGLGQ 458 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L I Y S E ++ + + +HAI AS +A+ERG + F S + G Sbjct: 459 MNLHGYLARERIFYGSEEGIDFTNIYFYSVVYHAIRASNLIAKERGTHFKGFPESDYASG 518 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + + E + + ++ ++ W ELK V+ G+ N N A+ PT + Sbjct: 519 KYFDKYTDQVWEPKTEKVRQLFADAGIHIPTQDDWRELKASVQQYGIYNQNLQAVPPTGS 578 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G +L N+ Sbjct: 579 ISYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLTND--------------------- 617 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 618 ----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRAQ 667 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 668 IYAWRKGIKTLYYIR 682 >gi|251792577|ref|YP_003007303.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter aphrophilus NJ8700] gi|247533970|gb|ACS97216.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter aphrophilus NJ8700] Length = 562 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 158/587 (26%), Positives = 252/587 (42%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ ++ S+P N G SCF + + D + I + E +++K Sbjct: 58 EGYAEKFYHYMARGYYSLSSPIWSNFGLDRGLSISCFGSYIGDSINAIMSTVAEIGVMSK 117 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G++I NGKS G F K+ T ++QG RKG Y++ Sbjct: 118 LGGGTSGYFGDIRPRGSNI-TNNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 176 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+LD+ + M + +++ + + Sbjct: 177 HGDIEEWLDIHT----EGNPIQLMYYGVCVSHEWLESMKAGDPYK--------------- 217 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +W K+L ETG P+I FKD N P + Sbjct: 218 ---------------------------RQIWAKLLQRKTETGIPYIFFKDNANAGRPDVY 250 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 ++H+SNLC+EI L SS +E+ VC L S+NLL FD K L Sbjct: 251 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 304 Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D V+ N +++A K HRA+GLG++G+ S L ++ + S EA++ + Sbjct: 305 DIVMSEFIAQSANIQFMDRANKFARRHRALGLGVLGWHSYLQSKNMAFDSFEAMQHNNII 364 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + + + AS ELAQ G KG Sbjct: 365 FKLLQEKTLKASKELAQRFGEPEILKG--------------------------------- 391 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN+ M++APT + + I G VS SI+P N YVK N F Sbjct: 392 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 442 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L LK++ L + + + +DGS+ ++ + +D K++ T EI + +I+ A++RQK Sbjct: 443 LEALLKRKGLDRDDIWESILLNDGSVQHLTELTEDEKEVFKTFSEISQLSVIQQAAQRQK 502 Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QS+N+ + + K L+ +Y A +GLK+ YY S SA V Sbjct: 503 YIDQGQSVNIMVHPATPAKDLNQLYLTAEELGLKSIYYQYSMSAAQV 549 >gi|254505919|ref|ZP_05118064.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] gi|219551142|gb|EED28122.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio parahaemolyticus 16] Length = 710 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 181/742 (24%), Positives = 305/742 (41%), Gaps = 83/742 (11%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 S L+ + + L++++ N R + + + H + Sbjct: 6 STEPLDYHALNAMLNLLDEKGNIQLDADRQAARQFFLQ-----HVNQNTFFFHNLA---- 56 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E + EG + + E L + + + +LG + Y L +G Sbjct: 57 EKLDYLVNEGYYEKEVLEQYDREFLQLIWDRAYQVKFRFRTFLGAYKFFTSYALKTRDGK 116 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M + A++ + S F +TPT NSG + +L S Sbjct: 117 RYLERFED---RVVMTALTLARGDKAFALDLMQEIISQRFQPATPTFINSGKKSRGELIS 173 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ + L++ GG+ + +R GA I G +S GV+P +K+ Sbjct: 174 CFLLRIEDNMESIGRAINSSLQLSRRGGGVALLLSNLREQGAPIKGILNQSSGVVPVMKL 233 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA YL H D+ +FLD ++ D++ R ++ IPD+ + Sbjct: 234 LEDSFSYANQLGARQGAGAVYLNAHHPDIMQFLDTKRENADEKIRIKTLSLGVVIPDITL 293 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548 + QN LFSP +V +YG F E Y D I+ + ISA L++ Sbjct: 294 ELAKQNKDMYLFSPHDV---ERVYGVPFSEISVSEKYYEMVDDPRIRKSK-ISARGLFQT 349 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P++ F+D N +P G ++ SNLC+EI + Sbjct: 350 LAEIQFESGYPYLMFEDTVNAANPI--KGRINMSNLCSEILQVNDASHFNDDLSYAHLGR 407 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRA 655 CNLGSIN+ D LA T+ ++R L+ V +++ ++ ++ N A Sbjct: 408 DISCNLGSINIAKA-----LDGGHLAHTVEVSIRALNAVSEMSAIDSVPSIRRGNDESHA 462 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S EAV+ +H ++AS +LAQE+ + F+ S Sbjct: 463 IGLGQMNLHGFLAREQIHYDSEEAVDFTRAYFATTLYHCLTASNKLAQEKQQVFVGFEHS 522 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + R + L M S W +L+ +V G+ N N AI Sbjct: 523 QYATGEFFAKYLQQDYSPRTGIVAALFERLDMQVPSIDDWQQLQSKVMESGLYNRNLQAI 582 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G +L N+ Sbjct: 583 PPTGSISYINDATASIHPVTAKVEIRKEGKIGRVYFPAPYLSND---------------- 626 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + A++I P +I+ + + +DQ SL L+ + + + Sbjct: 627 ---------------NLEYFKDAYDIGPKAIIDVYAAATEHVDQGLSLTLFFSDEVTTRD 671 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 ++ AW +KT YY+R R Sbjct: 672 INKAQIYAWKKKIKTLYYIRMR 693 >gi|225628772|ref|ZP_03786806.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti str. Cudo] gi|260167085|ref|ZP_05753896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. F5/99] gi|261756479|ref|ZP_06000188.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp. F5/99] gi|225616618|gb|EEH13666.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ceti str. Cudo] gi|261736463|gb|EEY24459.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella sp. F5/99] Length = 738 Score = 314 bits (805), Expect = 4e-83, Method: Composition-based stats. Identities = 180/758 (23%), Positives = 294/758 (38%), Gaps = 109/758 (14%) Query: 179 KIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 N+YD + L+ ++R + N+ V LR + Sbjct: 39 DYHALNAMLNLYDEDGKIQLDCDR-QAARQYFLQHVNWNTV----FFHNLREK------- 86 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM-MDFDLVYLANDLKYERDFAF-EYL 296 + EG + + + +F Y R F F +L Sbjct: 87 -----------------LDYLVAEGYYEQTVLDQYSFNFVRDLFDEA--YARKFRFPTFL 127 Query: 297 GLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 G Y Y L +G R E + RV M E+ A + + S + + Sbjct: 128 GAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDEQLARDLVEEIISGRYQPA 184 Query: 355 TPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 TPT N+G + +L SCFL V D++ I ++ L+K GG+ T +R GA Sbjct: 185 TPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAP 244 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I +S G+IP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ Sbjct: 245 IKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEK 304 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADR 531 R ++ IPD+ + N LFSP +V ++ L Y A Sbjct: 305 IRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPLTEISVTEKYREMVNDAQI 364 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC------ 585 + +KI+A ++ + + FE+G+P+I F+D N +P G + SNLC Sbjct: 365 AK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI--DGRITMSNLCSEILQV 418 Query: 586 ------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 E + CNLGS+N+ A D TI T++R L V D+ Sbjct: 419 SEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDFGKTIETSIRALTAVSDMS 473 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N AIGLG M L I Y S E V+ + +++HA+ AS Sbjct: 474 HIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVAYHAVRAS 533 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT---------SRLPWDE 748 +A E ++ F+ S + G + D A + R ++ W Sbjct: 534 NRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVRRIFEDAGIAIPTQDDWCA 592 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLV 807 LKK V G+ N N A+ PT +I+ I + SI P + ++ G +F+ Sbjct: 593 LKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMT 652 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ + + A+EI P +I++ + + + Sbjct: 653 ND-------------------------------NLEYYQDAYEIGPEKIIDTYAAATQHV 681 Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 682 DQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 719 >gi|260427754|ref|ZP_05781733.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella sp. SE45] gi|260422246|gb|EEX15497.1| ribonucleoside-diphosphate reductase, alpha subunit [Citreicella sp. SE45] Length = 707 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 183/740 (24%), Positives = 304/740 (41%), Gaps = 78/740 (10%) Query: 188 NMYDGLSESDLETAL-IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHH 246 + DGL L L ++ + I + + ++ AR + + + +K + Sbjct: 4 RLTDGLDYHALNAMLNLYDAEGRIRFDAD--RMAARQYFLQHVNQNTVFFHSLDEKLDY- 60 Query: 247 EMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRY 305 +EEG + ++ L + + ++R F F +LG Y Y Sbjct: 61 ------------LVEEGYYEAEVLDAYPRAFLHAIWDAA-FKRKFRFPTFLGAFKYYTSY 107 Query: 306 FLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 L +G R E + + VA+ LA + +E + + F +TPT N+G Sbjct: 108 TLKTRDGKRFLERYEDRVVMVALTLARGDQALAMSFME---EIVTGRFQPATPTFLNAGK 164 Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 + +L SCFL + D++ I + L+K GG+ T +R GA I G +S Sbjct: 165 KSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQSS 224 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 225 GVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLG 284 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENYERQADRGEIKVFRKIS 541 IPD+ + +N LFSP +V +YG F + + +KI+ Sbjct: 285 VVIPDVTFELAKRNEEMYLFSPHDV---EKVYGVPFSEISVTEKYAEMVADKHIRKKKIN 341 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A A ++ + + FE+G+P+I F+D N +P G + SNLC+EI + + E Sbjct: 342 ARAFFQTLAEIQFESGYPYIMFEDTVNRMNPI--AGRITMSNLCSEILQVNEASEFNEDL 399 Query: 602 L-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTH 653 S NL + D +TI TA+R L V ++ + ++ +K N Sbjct: 400 SYSRMGTDISCNLGSLNIARTMDGPDFGATIETAIRALTAVSEMSSIESVPSIRKGNDES 459 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFK 712 AIGLG M L H+ Y S E +E +++HA+ AS LA+ER + F Sbjct: 460 HAIGLGQMNLHGYLAREHVHYGSAEGIEFTSVYFAAVAYHALRASCALAKERGETFKGFA 519 Query: 713 GSLWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 S + G F + + +R W LK V G+ N N A+ Sbjct: 520 DSEYASGAFFDKYTSRDWLPENARVAELFADVTLPTRDDWAALKADVMAHGLYNRNLQAV 579 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G F+ N Sbjct: 580 PPTGSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAPFMSN----------------- 622 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884 + + + A+EI P LI++ + + +DQ SL L+ E + + Sbjct: 623 --------------ENLEYYRDAYEIGPEALIDTYAAATEHVDQGLSLTLFFPAEATTRD 668 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 669 INRAQIYAWKKGIKTIYYVR 688 >gi|322515074|ref|ZP_08068082.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] gi|322118954|gb|EFX91131.1| ribonucleotide-diphosphate reductase alpha subunit [Actinobacillus ureae ATCC 25976] Length = 554 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 156/587 (26%), Positives = 250/587 (42%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ +F S+P N G SCF + + D ++ I E M++K Sbjct: 50 EGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 109 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 110 IGGGTSAYFGDIRPRGSAIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 168 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 169 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 209 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 210 ---------------------------RQLWAKLLQRKTETGIPYLFFKDNANAGRPDVY 242 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L SS++E+ VC L S+NLL FD K L Sbjct: 243 KDKNMTVHASNLCTEIMLPSSNDESFVCCLSSMNLL------YFDEWKDTEAPEVLTYFL 296 Query: 633 DNVIDINCHTIEKA------KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D V+ + + HRA+GLG++G+ S L +I + S +A++ + Sbjct: 297 DVVMSEFIEKSKDMPFLDRAHRFATRHRALGLGVLGWHSYLQANNIAFDSFQAMQKNNLI 356 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + + + AS ELA+ G KG Sbjct: 357 FKTLQEKTLKASQELAKRFGEPEILKG--------------------------------- 383 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN+ M+IAPT + + I G VS S++P N YVK N F Sbjct: 384 ---------YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPF 434 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L L+++ L E + + ++DGS+ ++E++ D+ K++ T EI + +I+ A++RQK Sbjct: 435 LEKLLQEKGLDTEEIWESILHNDGSVQHLEQLTDEEKEVFKTFSEISQLSVIQQAAQRQK 494 Query: 866 WIDQAQSLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QS+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 495 YIDQGQSINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 541 >gi|222475860|ref|YP_002564381.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum lacusprofundi ATCC 49239] gi|222454231|gb|ACM58495.1| ribonucleoside-diphosphate reductase, alpha chain [Halorubrum lacusprofundi ATCC 49239] Length = 562 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 162/628 (25%), Positives = 264/628 (42%), Gaps = 112/628 (17%) Query: 310 NGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQ 367 G IE P+ ++A E E A FY+ +S + ++P N G Sbjct: 30 EGYLIEGVEPKERIRQIAENAEEILDE-EGFADRFYDYMSRGFYSLASPVWANFGLDSGL 88 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 SCF + + D++ I E + K GG + +R G+ I NGKS G F Sbjct: 89 PISCFGSYMEDNMESILYTHAEVGEMTKLGGGTSGYFGDIRPRGSPI-TNNGKSNGSYSF 147 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 ++ + V+QG R+G Y++ H D+EE+L+++ + D+ I D Sbjct: 148 TELFDTAINVVSQGETRRGQFAGYIDVEHDDLEEWLNIKT----EGDPVQDIFYGVIIGD 203 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 + + + E W Sbjct: 204 EWFQEMVDGDE--------------------EKR----------------------ETWA 221 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITLNSSSEETAVCNLGS 604 K++ G P+I F+D N PQ + +++SNLCTEI L ++ +E+ VC L S Sbjct: 222 KIIETRINIGVPYIIFRDNMNEGKPQVYKDKDYEINASNLCTEIALPATPDESFVCCLSS 281 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAKKSNHTHRAIGL 658 +N L +D K + T R LD V++ +E+A + HRA+G+ Sbjct: 282 MNAL------HYDEWKDTDAVETLTRFLDAVMEEFIQKAEGTQFMERAVRFAKRHRAVGI 335 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G++G+ S L IP+ S EA++ ++ I + AS ELA E G +G Sbjct: 336 GVLGWHSYLQSNMIPFDSMEAMQENEQIFRTIREKSYEASEELADEFGEPEMLEG----- 390 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG- 777 G RN+ M++APT + + I G Sbjct: 391 -------------------------------------YGRRNTTTMSVAPTKSSSVILGQ 413 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 VS SI+P N +V+ T N FL LK+R + + +DGS+ +++ + Sbjct: 414 VSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKERGRDGREVWDSIAQNDGSVQHLDCL 473 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLM 895 D+ K++ T EI M +I A++RQK IDQAQSLN+ + E S K+++ +Y +AW Sbjct: 474 TDEEKEVFKTFAEIPQMAIINQAAQRQKHIDQAQSLNVSIDPSEVSVKEINQLYIEAWKK 533 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKL 923 G+K+ YY S +A +K + ++ K Sbjct: 534 GVKSLYYQHSVNA--AQKFSRDILECKA 559 >gi|32477697|ref|NP_870691.1| vitamin B12-dependent ribonucleotide reductase [Rhodopirellula baltica SH 1] gi|81658769|sp|Q7UI46|NRDJ_RHOBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase; AltName: Full=Ribonucleoside-diphosphate reductase nrdJ gi|32448251|emb|CAD77768.1| ribonucleotide reductase [Rhodopirellula baltica SH 1] Length = 1040 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 123/622 (19%), Positives = 218/622 (35%), Gaps = 27/622 (4%) Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + +T ++ +PQ S+CF+ +V D++ I AML K+ G G D Sbjct: 187 MCNWHWDRTENTTAQPDNPYEYPQGSACFIQSVDDNMEDIMRLACSEAMLFKFGSGTGTD 246 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462 + +R + G G G + F++V + A V GGK R+ A L+ WH D+ EF Sbjct: 247 LSTIRSQREKLSG-GGTPSGPLSFMRVYDSIAGVVKSGGKTRRAAKMQSLKVWHPDILEF 305 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 ++ + + V + + L D Y + Sbjct: 306 IECKWAEEKKAHALIREGYDSNFNGEAYASV------CFQNANLSVRLTDDYMEAVRKNE 359 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 R A L KM + G P + + N + G +++S Sbjct: 360 NFQTRWITDKPTTEPPSYVAKELLNKMAECAWHCGDPGVQYDTTINKWHTCPNSGAINAS 419 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCH 641 N C+E + CNL SINL+ + FD+++ + RT + ++D + Sbjct: 420 NPCSEYMF----LDDTACNLASINLMKFVQQDGSFDHERFRAACRTFFIAQEILVDHASY 475 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 E +++H R +GLG S + +PY S A + + A S EL Sbjct: 476 PTEPIARNSHKFRPLGLGYSNLGSVIMTAGLPYDSDAARGMCGSLTALLHGEANRTSAEL 535 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMR 759 A G + + + + + +R WD + + + G R Sbjct: 536 ASVVGTFDGYVENEAPMLRVMQMHRDACDQINDDGPAELKEAARELWDGVLEIGEKYGFR 595 Query: 760 NSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWD 817 N+ +APT TI+ + + I+P + Y + G +VN + LK Sbjct: 596 NAQATVLAPTGTISFMMDCDTTGIEPDIALVKYKQLAGGGMLKIVNQTVKLGLKTLGYDA 655 Query: 818 EAMISDLKY--HDGSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWID 868 + + LKY + +I + D+ + AF I I + Q ++ Sbjct: 656 DTIDEILKYVDANDTIEGAPGLQDEHLAVFDCAFKPANGVRSIGWRAHITMMAAAQPFLS 715 Query: 869 QAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVP 927 A S + + + + + + Y W +GLK R S S +T +A Sbjct: 716 GAISKTVNMPTDVTPQDIADAYFWGWELGLKAIAIYRDGSKQSQPLNTKSDEQKATDAAE 775 Query: 928 VTDPNSSTHSLGIPSSCTSDTE 949 + + P Sbjct: 776 AAKVETVEKIVYKPRRERLPDT 797 >gi|119960800|ref|YP_948076.1| ribonucleotide-diphosphate reductase subunit alpha [Arthrobacter aurescens TC1] gi|119947659|gb|ABM06570.1| Ribonucleoside-diphosphate reductase alpha chain [Arthrobacter aurescens TC1] Length = 727 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 168/672 (25%), Positives = 275/672 (40%), Gaps = 60/672 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E ++ R + + L N ++ +LG Y Y L +G Sbjct: 76 EKLDYLVKNQYYERETLDQYTMNFIRDLFNRAYKKKFRFETFLGAFKFYTSYTLKTFDGK 135 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M E A + + F +TPT N+G +L S Sbjct: 136 RFLERYED---RVCMVALHLARGDEDLANRLVDEIIDGRFQPATPTFLNAGKAQRGELVS 192 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ T +R GA I +S GVIP +K+ Sbjct: 193 CFLLRIEDNMESIARAINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKL 252 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ +PD+ Sbjct: 253 LEDSFSYANQLGARQGAGAVYLHAHHPDIHRFLDTKRENADEKIRIKTLSLGVVVPDITF 312 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + +N LFSP D+ +YG F + + ++ + ISA ++ + Sbjct: 313 ELAKKNEDMYLFSP---YDVEKVYGVPFSDISVTEKYYEMVDDSRIKKTKISAREFFQTL 369 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602 + FE+G+P+I F+D N +P G + SNLC+EI SS A Sbjct: 370 AEIQFESGYPYIMFEDTVNRANPI--DGKITMSNLCSEILQVSSPSIYAEDLSYETVGKD 427 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLM 661 S NL + D +I T++R L V D++ +++ + N AIGLG M Sbjct: 428 ISCNLGSMNIAKTMDSPDFGLSIETSIRALSAVSDMSYINSVPSIAQGNAQSHAIGLGQM 487 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720 L H+ Y S E ++ + + FHA+ AS LA E + F+ S + G Sbjct: 488 NLHGYLAREHVHYGSEEGLDFTNIYFYTVLFHALRASNRLAIETGQKFGGFEKSTYASGE 547 Query: 721 FP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 F + + VR+ A + ++ W ELK V G+ N N A+ PT +I+ Sbjct: 548 FFDKYTEQEWVPETERVRELFAGHHIPTQDDWRELKASVMEHGIYNQNLQAVPPTGSISY 607 Query: 775 ICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ G +L N+ Sbjct: 608 INNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLTND------------------------ 643 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + + A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 644 -------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINKAQIYA 696 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 697 WRKGIKTLYYIR 708 >gi|323971480|gb|EGB66715.1| ribonucleotide reductase [Escherichia coli TA007] Length = 701 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ + +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKESKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|82407441|pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp-Gdp Complex gi|82407442|pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp-Gdp Complex gi|83753672|pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp-Adp Complex gi|83753673|pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp-Adp Complex gi|83753674|pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|83753675|pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|83753676|pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|83753677|pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Cdp Complex gi|85543938|pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp Complex gi|85543939|pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp Complex gi|85543940|pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Udp Complex gi|85543941|pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Datp-Udp Complex gi|85543942|pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp Complex gi|85543943|pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp Complex gi|85543944|pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp Complex gi|85543945|pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp Complex gi|301598861|pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp And Adenosylcobalamin gi|301598862|pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp And Adenosylcobalamin gi|301598863|pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosylcobalamin gi|301598864|pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosylcobalamin gi|301598865|pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosine gi|301598866|pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In Complex With Dttp, Gdp And Adenosine Length = 644 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 147/566 (25%), Positives = 247/566 (43%), Gaps = 54/566 (9%) Query: 358 LFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGT 417 ++ S LS+CF+ V D + IF A++E A++ K GG+G++++ +R G+ + GT Sbjct: 121 IYRSRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGT 180 Query: 418 NGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRT 476 +GK+ G + F+ V N V QG +R+GA+ L H D+EEF+D +K + Sbjct: 181 HGKASGPVSFMHVFNSAISVVKQGSRRRGALMGILNINHPDIEEFIDAKKENTGEAVLNF 240 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEIK 535 +++ M + YE E + Sbjct: 241 FNLSVGF-----PMDKKEIL-----------------------KLYEEDGELELSHPRST 272 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 + +K+ L+RK+ T +++G P + F N P ++S+N C EI Sbjct: 273 IRKKVKIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLS 328 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRA 655 + CNLGSI++ + N D + L ++ AVR LDNVID+N I+K K+ R Sbjct: 329 DYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRR 388 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSL 715 +GLG+MGF L+ L IPY S EA + A M FI+ HA S EL +E+G + + S Sbjct: 389 LGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISR 448 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + + AM ++ ++ RN + IAPT +I+NI Sbjct: 449 Y-----------RTEDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNI 497 Query: 776 CGVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 S ++P++ Y + D VN L +L L I GS Sbjct: 498 ADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPEIL---KRIEKELIEKGS 554 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 + +I +P+ +KK+ A +IDPM + Q+++D S + + + + +Y Sbjct: 555 LKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVY 614 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKST 915 +A ++ R S + + Sbjct: 615 LEALRTNVRGITVYRDGSLQTQVLTK 640 >gi|327440527|dbj|BAK16892.1| ribonucleotide reductase, alpha subunit [Solibacillus silvestris StLB046] Length = 697 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 167/674 (24%), Positives = 295/674 (43%), Gaps = 59/674 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311 E ++EG + E + + + ++ Y+ Y + Sbjct: 50 EKVRYLVDEGYYEKEFLELYSMDFIKQMYKKAYSYKFRFPSFMSASKFYESYAMKSRDGK 109 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSS 370 +E + + +A+ LA + ++A+E + +TPT NSG + +L S Sbjct: 110 EILEKYEDRIVIIALYLAQGDEALAEKAIE----AVMTAYQPATPTALNSGKKARGELVS 165 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CF T+ D + I + L++ GG+G + T +R LG I G ++ GV+P K+ Sbjct: 166 CFKLTMDDTMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIKGILNRASGVMPVAKL 225 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 ++ NQ G+R G+ YL +H D+E F+ +K DD+ R ++T +PD+F Sbjct: 226 LENSFSYSNQLGQRNGSGVVYLNVFHGDIEAFISSKKPNADDKIRLATLSTGIILPDIFF 285 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRK 548 + + ++ LFS D+ YGK E Y D I+ ++++A L+ + Sbjct: 286 ELMRRDKDIVLFSS---YDIFKEYGKRMSEISITEMYYEFLDNPNIRKLKRLNARKLYTE 342 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------SSSEETAVCNL 602 + FE+G+P+ F D N P + +G V SNLCTEI + E L Sbjct: 343 IKKAQFESGYPFEIFDDNVNNTHPLKEIGRVKMSNLCTEILQYQQTSVVTDQNEPNEYGL 402 Query: 603 G-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + + + TA+R+L NV + + + K+N ++GLG+ Sbjct: 403 DVSCNLGSIDIHEATKVQDFGQLVDTAMRLLTNVSTMTDIVNVPSVSKANKVMHSVGLGV 462 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQG 719 M L I Y S E++E D ME +++H++ AS+E+A+ + + F+ S + G Sbjct: 463 MNLHGHLVQSGIRYGSKESIEFIDAFMESLNYHSLKASMEIAKQKNETFYRFEESDYASG 522 Query: 720 VFPIDSIGLLAEVRDELAMNR------TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 V+ + + + +R W++LK V G+ +S +AIAPT +I+ Sbjct: 523 VYFESYVNKEEKELTPEVIKALGGTPIITRNMWEQLKSDVLKHGLFHSYRLAIAPTGSIS 582 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + + V+ FL N+ Sbjct: 583 YIRSCTASISPVTERVEVRDYADSRTIYPMPFLTND------------------------ 618 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892 ++++ A+E++P LI+ + QK +DQ S+ LY+ + + ++L Y A Sbjct: 619 -------NQELYTEAYEVNPYELIDLYAAAQKHVDQGISMTLYVTDQWNTEQLAKAYIYA 671 Query: 893 WLMGLKTTYYLRSR 906 W G+KT YY+R R Sbjct: 672 WTKGIKTVYYVRQR 685 >gi|311741197|ref|ZP_07715021.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] gi|311303367|gb|EFQ79446.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] Length = 720 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 167/690 (24%), Positives = 291/690 (42%), Gaps = 67/690 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301 H +Y I+ + + +++ +D ++ K + F + Sbjct: 51 LQHVNQNTVYFHDLEEKIDYLINNKYYDPQVIEQYDFSFIKELFKRAYSYKFRFKSFLGA 110 Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y +G R E + RV+M A + + + F +TP Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDAGLAEHLVDEIMTGRFQPATP 167 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G +L SCFL + D++ I ++ L+K GG+ + +R GA I Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIK 227 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 228 HIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIR 287 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533 ++ +PD+ + +N LFSP D+ +YGK F E+YE + Sbjct: 288 IKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPR 344 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 I+ +KI+A ++ + + FE+G+P+I F+D N +P + ++ SNLC+EI +S Sbjct: 345 IRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRANPVKTSW-INMSNLCSEILQVNS 402 Query: 594 SEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 + E S NL + D A+T+ TA+R L V D + ++ Sbjct: 403 ASEFNADLTYEELGSDISCNLGSLNIAMTMDSPDFANTVETAIRGLTAVADKTSIDSVPS 462 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ N AIGLG M L HI Y S E ++ + + + A+ AS ++A+ER Sbjct: 463 VRRGNDESHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAVLYAALRASNKIARER 522 Query: 706 GAY-SSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 G Y + F S + G F + E+ D +++ S W++LK+ V Sbjct: 523 GEYFTEFPQSEYASGEFFDRYDPEEFKPKTKKVQELFDASSIHTPSAQDWEDLKQEVAKH 582 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815 G+ N N A+ PT +I+ I + SI P + ++ G + N+ Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + ++EI ++++ + K++DQ SL L Sbjct: 637 -------------------------NLEYFKDSYEIGYEKIVDTYAVATKYVDQGLSLTL 671 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + ++ AW G+KT YY+R Sbjct: 672 FFKDTATTRDVNRAQIYAWRKGIKTLYYIR 701 >gi|319948550|ref|ZP_08022681.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia cinnamea P4] gi|319437797|gb|EFV92786.1| ribonucleotide-diphosphate reductase subunit alpha [Dietzia cinnamea P4] Length = 693 Score = 314 bits (804), Expect = 5e-83, Method: Composition-based stats. Identities = 171/683 (25%), Positives = 285/683 (41%), Gaps = 74/683 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +E+ R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLVEKDYYEREVLDQYTRNFVRELFDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + F +TPT NSG + + Sbjct: 99 KRYLERYEDRVCMVALTLAAGD---ETLARQLVDEIIEGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREHGAPIKHIENQSSGVIPVMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ +FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYKFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY--ENYERQADRGEIKVFRKISAVALWR 547 + +N LFSP D+ +YGK F NY + IK + I+A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERIYGKPFADVDISANYHEMVEDSRIKKTK-INARHFFQ 331 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSE 595 + + FE+G+P+I ++D N +P G + SNLC+EI S Sbjct: 332 TVAELQFESGYPYIMYEDTVNRANPI--AGKITHSNLCSEILQVSTASEFNEDLTYSHVG 389 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654 + CNLGS+N+ D TI TA+R L V D + +++ ++ N Sbjct: 390 KDISCNLGSLNIAKA-----MDSPDFGRTIETAIRGLTAVSDQTHINSVPSIERGNSESH 444 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 AIGLG M L I Y S E ++ + + +HA+ +S +A+ER ++ F Sbjct: 445 AIGLGQMNLHGYLARERIHYGSEEGIDFTNIYFYTVLYHALRSSNLIARERGTWFAGFPE 504 Query: 714 SLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 S + G F E E + ++ W LK V+ G+ N N A Sbjct: 505 SKYASGEFFDKYTDQTWEPATDRVRQLFAEAEVAIPTQEDWRALKADVQKYGIYNQNLQA 564 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT +I+ I + SI P + ++ G +L N+ Sbjct: 565 VPPTGSISYINNSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND--------------- 609 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ----------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTR 653 Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906 +++ AW G+KT YY+R R Sbjct: 654 EVNRAQIYAWRKGIKTLYYIRVR 676 >gi|270339460|ref|YP_003331540.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1] gi|254940176|gb|ACT88319.1| ribonucleotide reductase subunit 1 [Felid herpesvirus 1] Length = 786 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 174/760 (22%), Positives = 302/760 (39%), Gaps = 87/760 (11%) Query: 216 YAKVTARFLLEKLRREVLTTVYKK--PQKATHHEMQCLYPEYFCR-YIEEGVKARLLHES 272 Y + L R+E + + K + +Y E +I VK L + Sbjct: 33 YGYSGSSILQNVSRQEAVEYITSVVANLKPRCRIDERIYIELGKMVHIRIRVKTTTLDKW 92 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQIL-----------------------YDRYFLHI 309 + +L L + RD + G++ + + Y ++ Sbjct: 93 LNSMELALLPQVI---RDISINMPGVKRVLEQFEIHDYEPLCELGLQSALKYEEMYLANL 149 Query: 310 NGSRIEMPQAFFMRVA----------MGLALKETEKEKR--AVEFYNLLSSFHFMCSTPT 357 +E FF+R+A M AL F+ LS + +TP Sbjct: 150 ENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFKSFFFYLSRQLMIPATPI 209 Query: 358 LFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 + G L+SC+L + + D I +++ A + GG+G + Sbjct: 210 MLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRGGIGICLQNFNKKLSK-- 267 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRR 474 ++GV+P LK+ + +A+N +R VC Y+E WH D+ L++R D+ Sbjct: 268 ---ECTKGVLPLLKLLDSMTIAINSDSERPTGVCIYVEPWHADIRSILNMRGMLASDENS 324 Query: 475 RTHDMNTANWIPDLFMKRVTQN-----AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 R ++ + W PDLF R ++ D S L LYGKEF YE E Sbjct: 325 RCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFDDAASHLSKLYGKEFNEEYERLEAAG 384 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEI 588 + + + ++ TG P++ FKD CN G + +SNLCTEI Sbjct: 385 MGVD-----SLPIQEMAYLIVRSAIMTGSPFLMFKDACNRHYHFDTRGDALTTSNLCTEI 439 Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQFD------YDKLASTIRTAVRVLDNVIDINCHT 642 ++ + VCNL SINL D L TA ++ ++ Sbjct: 440 IQKATDTKHGVCNLISINLPQCLRRIAHDQSLYFSIPLLIRAAYTATIFVNAMMRAGNFP 499 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 E A + +R++GLG+ G + L + S EA + + +E + AI AS L Sbjct: 500 TEAAMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEARRLNRQILESLLLGAIHASTSLC 559 Query: 703 QE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 + + +F+ S++ +G+ P D+ W +L+ + G+ NS Sbjct: 560 KLGMTPFKNFRESIYGRGLLPFDAYPNTP---------LIHFKKWQQLRVVMMKYGLYNS 610 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWDE 818 +A+ PT + + + S+ P + NL+ K +G+ N L+ +++ R+ Sbjct: 611 QFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGEILRPNLQLMRTIRRLFPRECARL 670 Query: 819 AMISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 ++IS L+ SI + TAFE D LI+ + R ++DQ+QS++L+ Sbjct: 671 SVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQRQLIDMCADRAPFVDQSQSMSLF 730 Query: 877 LDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 + EP ++ + A+ GLKT YY + + AT+ Sbjct: 731 ISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKKATN 770 >gi|194439439|ref|ZP_03071515.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] gi|194421615|gb|EDX37626.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 101-1] Length = 714 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ + +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKESKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|227878536|ref|ZP_03996470.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] gi|227861870|gb|EEJ69455.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] Length = 722 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 178/750 (23%), Positives = 315/750 (42%), Gaps = 79/750 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ + E NY +E + + + L E Sbjct: 8 DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 58 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ + + + + + + ++G Y Y L N ++ +E Sbjct: 59 YLVDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 118 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + R M E+ A+ + S F +TPT N+G + + SC+L Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 175 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q ++ + ISA ++ + + Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQ 352 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 412 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL S + +V+ L+ V + +K N +RAIGLG Sbjct: 413 LGSLNIAAAMNSA----DKLGSLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 468 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA++ GA+ FK S + G Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 528 Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I + E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 529 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + V ++ Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 +I D + + A+E+ P +I+ + QK++DQ+ SL L++++ + + L+ Y Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678 Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 A+ + YY+R R E T Sbjct: 679 YAFKKRCNSIYYVRIREKVLAGSENLTADE 708 >gi|306840846|ref|ZP_07473593.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO2] gi|306289241|gb|EFM60490.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO2] Length = 738 Score = 314 bits (803), Expect = 6e-83, Method: Composition-based stats. Identities = 179/781 (22%), Positives = 308/781 (39%), Gaps = 100/781 (12%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + + DG L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + VA+ LA Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAR 163 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 + E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 164 GD---EQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV- 732 S E V+ + +++HA+ AS +A E ++ F+ S + G + Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEYFDKYTDQAWAPA 569 Query: 733 -------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 ++ + ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 570 TEKVRRIFEDADIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIHPI 629 Query: 786 YQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + ++ G +F+ N+ + Sbjct: 630 VSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLEY 658 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYL 903 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+ Sbjct: 659 YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYI 718 Query: 904 R 904 R Sbjct: 719 R 719 >gi|300957446|ref|ZP_07169659.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] gi|300315802|gb|EFJ65586.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 175-1] Length = 701 Score = 314 bits (803), Expect = 7e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFCFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|256849453|ref|ZP_05554885.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus crispatus MV-1A-US] gi|262046122|ref|ZP_06019085.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus MV-3A-US] gi|256713569|gb|EEU28558.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus crispatus MV-1A-US] gi|260573452|gb|EEX30009.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus MV-3A-US] Length = 722 Score = 314 bits (803), Expect = 7e-83, Method: Composition-based stats. Identities = 177/750 (23%), Positives = 312/750 (41%), Gaps = 79/750 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ + E NY +E + + + L E Sbjct: 8 DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 58 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ + + + + + + ++G Y Y L N ++ +E Sbjct: 59 YLVDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 118 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + R M E+ A+ + S F +TPT N+G + + SC+L Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 175 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q ++ + ISA ++ + + Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQ 352 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCN 412 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL + +V+ L+ V + +K N +RAIGLG Sbjct: 413 LGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 468 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA+ GA+ FK S + G Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGD 528 Query: 721 FPIDSIGLL--------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 529 YFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + V ++ Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 +I D + + A+E+ P +I+ + QK++DQ+ SL L++++ + + L+ Y Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678 Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 A+ + YY+R R E T Sbjct: 679 YAFKKRCNSIYYVRIREKVLAGSENLTADE 708 >gi|167856023|ref|ZP_02478768.1| ribonucleoside-diphosphate reductase large chain [Haemophilus parasuis 29755] gi|219871495|ref|YP_002475870.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis SH0165] gi|167852862|gb|EDS24131.1| ribonucleoside-diphosphate reductase large chain [Haemophilus parasuis 29755] gi|219691699|gb|ACL32922.1| ribonucleotide-diphosphate reductase alpha subunit [Haemophilus parasuis SH0165] Length = 569 Score = 314 bits (803), Expect = 7e-83, Method: Composition-based stats. Identities = 153/581 (26%), Positives = 247/581 (42%), Gaps = 94/581 (16%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY + +F S+P N G SCF + + D ++ I E M++K Sbjct: 65 EGYADKFYYYMGRGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTTAEVGMMSK 124 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ Sbjct: 125 IGGGTSAYFGDIRPRGSLIKN-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIE 183 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D++E+LD+ + M + +++ + + Sbjct: 184 HGDIDEWLDIHT----EGNPIQLMYYGVCVGHDWLESMKAGDPYK--------------- 224 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 LW K+L ETG P++ FKD N P + Sbjct: 225 ---------------------------RQLWAKILQRKTETGIPYLFFKDNANAGRPDVY 257 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 VH+SNLCTEI L S++EE+ VC L S+NLL D ++ + V Sbjct: 258 KDKNMTVHASNLCTEIMLPSNNEESFVCCLSSMNLLYFDEWKDTDAPEVLTYFLDVVMSE 317 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 +++A + HRA+G+G++G+ S L +IP+ S EA++ + + + Sbjct: 318 FIEKSAEIPFLDRANRFAKRHRALGIGVLGWHSYLQANNIPFDSFEAMQKNNIIFKTLKE 377 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 + AS ELAQ G KG Sbjct: 378 KTMKASEELAQRFGEPELLKG--------------------------------------- 398 Query: 753 VKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 G RN+ M+IAPT + + I G VS S++P N YVK N FL L+ Sbjct: 399 ---YGRRNTTLMSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEQLLR 455 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 ++ L E + + +DGS+ ++ ++ + K++ T EI + +I+ A++RQK+IDQ Q Sbjct: 456 EKGLDTEEIWESILLNDGSVQHLTQLSEHEKEVFKTFSEISQLSVIQQAAQRQKYIDQGQ 515 Query: 872 SLNLYLDEPS-GKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 S+N+ + + + L+ +Y A +GLK+ YY S SA V Sbjct: 516 SINIMVHPATPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 556 >gi|333001012|gb|EGK20582.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-272] gi|333015484|gb|EGK34823.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-227] Length = 714 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVNAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D + T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|306845615|ref|ZP_07478184.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO1] gi|306273936|gb|EFM55763.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. BO1] Length = 738 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 181/782 (23%), Positives = 307/782 (39%), Gaps = 102/782 (13%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + + DG L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + RV M Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 E+ A + + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 161 LARGDEQLARDLVDEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRTNPI--EGRITMSNLCSEILQVSEASLFHEDLSYDYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S E V+ + +++HA+ AS +A E ++ F+ S + G + D A Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568 Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMESGLYNQNLQAVPPTGSISYINHSTSSIHP 628 Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + ++ G +F+ N+ + Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LR 904 +R Sbjct: 718 IR 719 >gi|170019073|ref|YP_001724027.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ATCC 8739] gi|256024813|ref|ZP_05438678.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 4_1_40B] gi|300949071|ref|ZP_07163118.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|301645346|ref|ZP_07245293.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|307139367|ref|ZP_07498723.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli H736] gi|169754001|gb|ACA76700.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli ATCC 8739] gi|300451457|gb|EFK15077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 116-1] gi|301076380|gb|EFK91186.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 146-1] gi|323935631|gb|EGB31948.1| ribonucleotide reductase [Escherichia coli E1520] gi|323941489|gb|EGB37672.1| ribonucleotide reductase [Escherichia coli E482] gi|323960579|gb|EGB56206.1| ribonucleotide reductase [Escherichia coli H489] Length = 701 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|284922617|emb|CBG35705.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli 042] Length = 714 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TA+ Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAM 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWARLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|284931053|gb|ADC30991.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. F] Length = 722 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 184/734 (25%), Positives = 303/734 (41%), Gaps = 97/734 (13%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311 E I+ + + E++ L L +K E D F ++G Y+ Y L N Sbjct: 53 HERMDYLIKNDFYEKEVVENVSKEQLEELYGVIK-EFDHEFPSFMGAFKFYNSYCLKSND 111 Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 + E + A+ L K + + S F +TPT N+G + + Sbjct: 112 GKEFYETYSERCLMNALFLGGKNFQNV---KNILIEILSGRFQPATPTFLNAGKKQRGEY 168 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L V D++ I A+ + L+K GG+ T +R GA I G++ GVIP + Sbjct: 169 VSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTNLREFGAPIKNIEGQASGVIPVM 228 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G+R G AYL H DV FLD ++ D++ R + +PD+ Sbjct: 229 KILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSKRENADEKIRIKSLALGLVVPDI 288 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547 + N LFSP +V YGK F E ++ + ISA ++ Sbjct: 289 TFELAKNNEQMALFSPYDVQRE---YGKPFSDIKVTEEYHNMVNNPRIKKTYISARKFFQ 345 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597 + + FE+G+P++ F D N R + G + SNLC+EI +S+S E Sbjct: 346 TIAELHFESGYPYLLFDDTVNNR--NPNAGRIVMSNLCSEIVQSSTSTEYNEDFSIKKLG 403 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHR 654 CNLGS+N+ + ++ ++ A++ LD+V N K N + Sbjct: 404 QDISCNLGSVNIDKMMRSA----ERFEDSVYYAIKSLDHVSKSANLDCAPSVKNGNANNH 459 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 A+GLG M L I Y SPEA+E D ++++A AS LA E+ Y++FK Sbjct: 460 ALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLAYYAFKASNRLAVEQKQTYANFKT 519 Query: 714 SLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 S + G + E+ + ++ W L + +K G+ N++ Sbjct: 520 SKYADGSYFDKYTKCDPNTYVIKNPKIKEIFSNYKIKVPTQADWQALTEEIKKTGLANAH 579 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +AIAPT +I+ + + SI P + V+ G V Sbjct: 580 LLAIAPTGSISYLSSCTPSIQPVVAPVEVR--KEGKIGRV-------------------Y 618 Query: 823 DLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 L Y + + K + A+E+ P I+ ++ QK +DQA SL L++++ Sbjct: 619 SLAYK---------LNEHNYKYYKDGAYELGPNPYIDICAQAQKHVDQAISLTLFMNDTA 669 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + + L+ Y +A+ + YY+R R +V + + K A V Sbjct: 670 TTRDLNKAYIRAYKSKCASVYYVRVR--QNVLEESENLDWAKDQASTV------------ 715 Query: 941 PSSCTSDTECEVCQ 954 +CE CQ Sbjct: 716 --------DCEACQ 721 >gi|326402358|ref|YP_004282439.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium multivorum AIU301] gi|325049219|dbj|BAJ79557.1| vitamin B12-dependent ribonucleotide reductase [Acidiphilium multivorum AIU301] Length = 761 Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats. Identities = 153/639 (23%), Positives = 255/639 (39%), Gaps = 85/639 (13%) Query: 295 YLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + QI +Y L G ++ + + RVA LA E E FY L F F+ Sbjct: 20 PISAQIWDAKYRLKDEAGEPVDRTVEDTWRRVARALAETEREPSSWEAPFYEALRDFRFV 79 Query: 353 CSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + + +GT L +CF+ + DDL IF L+E A+ + GG+G D++ +R Sbjct: 80 PAGRIISGAGTARRVTLFNCFVMGDIEDDLGRIFAHLREAALTMQQGGGIGYDFSSIRPK 139 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + G + G + F+ V + + G R+GA+ A + H D+E F+ ++ Sbjct: 140 GAAVRGVGADASGPLSFMDVWDSMCRTIMSAGARRGAMMATMRCDHPDIEAFIAAKR--- 196 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + R + N + + D FM+ V +A W L Sbjct: 197 -EPGRLRNFNLSVLVTDDFMRAVEADAAWDLVF--------------------------- 228 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 E KV+R + A ALW + ++ P + F D N R+ + +H++N C E L Sbjct: 229 --EGKVYRTLQARALWEAITRATYDYAEPGVIFIDRINKRNNLYYCETIHATNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 C LGSINL + D +LA + AVR+LD+ ID + +E Sbjct: 287 PPY----GACLLGSINLARLVRDPFGSGARIDEAELAELVTIAVRMLDDTIDASGFPLEA 342 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ R +GLG+ G AL + + Y +PEA A + I A AS LA E+ Sbjct: 343 QREEAVAKRRVGLGMTGLADALMMCGLRYGTPEAAARAGDWARQIERAAYLASAALAAEK 402 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ + + + G + L D ++ + G+RN+ + Sbjct: 403 GAFPLYDAAQYLAGE-------------------TIAGLDED-VRAAIAAHGIRNALLTS 442 Query: 766 IAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 +APT TI+ + VS ++P + Y + L + +R+ +E L Sbjct: 443 VAPTGTISLLSDNVSSGVEPVFALAYTRKV-----------LQRDGSRRE--EEVTDYAL 489 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + G +P TA E+ P + + Q+ +D A S + + + + Sbjct: 490 RLFRAKFGEGAPLPAH----FVTAQELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFE 545 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +Y A+ G K R + T D K Sbjct: 546 DFQEVYLDAYRSGCKGCTTYRPNAVTGSVLEVAPPADAK 584 >gi|332999412|gb|EGK18997.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri VA-6] Length = 714 Score = 313 bits (802), Expect = 8e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D + T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|30064042|ref|NP_838213.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 2457T] gi|56480159|ref|NP_708489.2| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 2a str. 301] gi|30042298|gb|AAP18023.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella flexneri 2a str. 2457T] gi|56383710|gb|AAN44196.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella flexneri 2a str. 301] Length = 701 Score = 313 bits (802), Expect = 8e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D + T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|18202755|sp|Q9CBQ0|RIR1_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase R1 subunit Length = 721 Score = 313 bits (802), Expect = 8e-83, Method: Composition-based stats. Identities = 175/738 (23%), Positives = 297/738 (40%), Gaps = 81/738 (10%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEY 255 + +S ++ E +Y + A L + ++VL Q + + E Sbjct: 10 VTASTHMLSNETDYHALNAMLNLYDADGKIQFDKDVLAARQFFLQHVNQNTVFFHNQDEK 69 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 I E R + + + L + ++ +LG Y Y L +G R Sbjct: 70 LDYLIRENYYEREVLDQYSRNFVKSLLDRAYAKKFRFSTFLGAFKYYTSYTLKTFDGKRY 129 Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 E + VA+ LA + A + + + F +TPT NSG + + SCF Sbjct: 130 LERLEDRVCMVALTLAAGD---TGLAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCF 186 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 187 LLRIEDNMESIGRSVNSALQLSKRGGGVALLLSNIREHGAPIKNIEHQSSGVIPIMKLLE 246 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 247 DAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVIIPDITFEL 306 Query: 493 VTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 +N LFS +V ++++ Y A + K I A ++K+ Sbjct: 307 AKRNEDMYLFSSYDVERVYEVPFADISVTEKYYEMLDDARIRKTK----IKAREFFQKLA 362 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598 + FE+G+P++ F+D N +P G + SNLC+EI + + Sbjct: 363 ELQFESGYPYVMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDI 420 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ D A T+ A+R L V D + ++ ++ N+ AIG Sbjct: 421 SCNLGSLNIAKT-----MDSPDFAQTVEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIG 475 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716 LG M L I Y S E V+ + + FH + AS +A ERG + F+ S + Sbjct: 476 LGQMNLHGYLSREGIFYGSEEGVDFTNIYFYTVLFHVLLASNSIAIERGTFFKGFERSKY 535 Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G F I E + E A+ ++ W LK+ V G+ N N A+ P Sbjct: 536 ASGEFFDKYIEQTWEPKTDKVRQLFAEAAIRIPTQNDWKRLKELVVAHGIYNQNLQAVPP 595 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + ++ G ++ N+ Sbjct: 596 TGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND------------------ 637 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 638 -------------NLQYYQDAYEIGYQKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVN 684 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 685 KAQIYAWRKGIKTLYYIR 702 >gi|237745665|ref|ZP_04576145.1| ribonucleotide reductase large subunit [Oxalobacter formigenes HOxBLS] gi|229377016|gb|EEO27107.1| ribonucleotide reductase large subunit [Oxalobacter formigenes HOxBLS] Length = 957 Score = 313 bits (802), Expect = 8e-83, Method: Composition-based stats. Identities = 149/643 (23%), Positives = 260/643 (40%), Gaps = 75/643 (11%) Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCF 372 + RVA LA E ++K A EF F+ + +GT L +CF Sbjct: 33 SAEEVMERVACALAEVEAPKSRKKYAEEFL-WAMQNGFIPAGRVSSAAGTGLQTTLINCF 91 Query: 373 LTTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 + V D + GI+ AL + A + GG+G +++ +R GA + GT + G I Sbjct: 92 VQPVGDSITNMVDGKPGIYTALAQAAETMRRGGGVGYNFSSIRPRGAKVRGTGSSASGPI 151 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++KV + + V G R+GA A L H D+ EF+ +++ ++ + + N + + Sbjct: 152 SYMKVFDRSCETVESAGARRGAQMAVLNIDHPDILEFITVKQ----EQNQLSNFNVSVGV 207 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V ++ + L E + F+ A V+ +I A + Sbjct: 208 SDEFMRAVETDSDFELAHTAE-PNDELKEKGAFKRA----------DGKWVYNRIKAREV 256 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ + P + + D N + + V+ ++N C E L + C LGS+ Sbjct: 257 WDLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIEATNPCGEQPLP----DYGCCCLGSL 312 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL + FD++ L + AVR+LDNV+ +E+ + R IGLG Sbjct: 313 NLTSFITAPFSAQPLFDFNLLTRVTKIAVRMLDNVLTATKWPLEEQAREAAAKRRIGLGF 372 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 G AL +L I Y S +A ++ E + + A + S+ELA+ERG + + +G Sbjct: 373 TGLGDALIMLGIRYDSEKARILSAEIAKAMRDAAYTGSIELAKERGGFPMLDVERYLEGG 432 Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GV 778 F +E+K++++ G+RNS+ +IAPT TI+ Sbjct: 433 FV--------------------SRLPEEMKEKIRKHGIRNSHLTSIAPTGTISLAFADNA 472 Query: 779 SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S I+P++ Y + D + N + V + R + +D S Sbjct: 473 SNGIEPAFSWFYNRVKRMPDGSRKN-YTVEDHAYR-------VYRSMNNDVS-------- 516 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897 L +A EI + + + +ID A S + + + + +Y +AW GL Sbjct: 517 -KLPDYFVSALEISAIDHMLMVAAVAPYIDAAISKTVNVAEDYPYEDFKNLYMEAWKKGL 575 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 K R + + S + +S T S Sbjct: 576 KGITTYRPNNVRTAILSVPAEEKKAEAPEEKSTTHSVTLSEQD 618 >gi|117926763|ref|YP_867380.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Magnetococcus sp. MC-1] gi|117610519|gb|ABK45974.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Magnetococcus sp. MC-1] Length = 707 Score = 313 bits (802), Expect = 8e-83, Method: Composition-based stats. Identities = 144/659 (21%), Positives = 271/659 (41%), Gaps = 63/659 (9%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEK--EKRAV 340 + +RD + I +Y L G + + F RVA LAL E E E+ Sbjct: 10 INPQRDLELQSASQDIWDRKYRLKSKGGDPVDKTIEDTFKRVARALALVEQEPLQEQWYQ 69 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSC-FLTTVPDDLYGIFGALQENAMLAK 395 F L + + N+G R + +C TV D + I A+ E + K Sbjct: 70 RFLWALMQGAI-PAGRIVSNAGARDHKPATSTINCTVSQTVKDSMDDILAAVHEAGLTLK 128 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 G+G +++ +R GA + G + G + F+ + + V+ G R+GA A + Sbjct: 129 AGCGIGYEFSTLRPRGAFVAGAGSSTSGPLSFMDIYDAMCRTVSSAGGRRGAQMATFDIT 188 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DV +F+ ++ + R N + + + FM+ V + W L P + ++L Sbjct: 189 HPDVVDFIRAKR----EDGRLRQFNLSCLVTEQFMEAVKSDMDWELVFPA---NHYELDD 241 Query: 516 KEFEIAYENY-----ERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 EI Y ++ + ++GE+ +V++ I A LW +++ ++ P D N Sbjct: 242 PTVEIVYRHWPVTEGYKTNEQGEVACRVWKSIPARRLWDVVMSSTYDYAEPGFILIDKVN 301 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLAS 623 ++ + ++N C E L C LGS+NL N FD+ + Sbjct: 302 EQNNNWFCEDIRATNPCGEQPLPPY----GACLLGSVNLARFVKNPFTAKAEFDWARFKE 357 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + R+LDNV++I+ + R G+G +G S L +L++ Y ++VE Sbjct: 358 VVAVFTRMLDNVVEIHGLPLPGQADEIAHKRRHGMGFLGLGSTLTMLNMVYGDRQSVEFT 417 Query: 684 DESMEFISFHAISASVELAQERGAYSSF-------KGSLWDQGVFPIDSIGLLAEVRDEL 736 + ++ +ELA E+G + + + D I + ++ ++ Sbjct: 418 SQVAREMALTGWEVGLELANEKGPAPVMNQMYTITEAMMAKRPEMANDGICVGDQLPGKV 477 Query: 737 AMNRTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANICGV--SQSIDPSYQNLYV 791 M R SR + L+KR++T G R S+ +IAPT TI+ G S I+PS+ + Y Sbjct: 478 LMARYSRYMAKFPERLRKRIETEGSRFSHHSSIAPTGTISLSLGNNVSNGIEPSFAHKYS 537 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG-NIERIPDDLKKI----HA 846 ++ + E ++ + +L + + + + ++ K + Sbjct: 538 RNI------------IREGRKTKEKVDVFSYELLAYRALVNPDADPYAEEEKNLLPATFL 585 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + I+P ++ + Q+W+D + S + + + + IY A+ GLK R Sbjct: 586 DSNAINPRAHVDIQAAAQEWVDSSISKTINVPTDFPYDEFKDIYLYAYEKGLKGCTTFR 644 >gi|256019543|ref|ZP_05433408.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] Length = 701 Score = 313 bits (802), Expect = 9e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|315061956|gb|ADT76283.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli W] Length = 701 Score = 313 bits (802), Expect = 9e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTTVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|157162126|ref|YP_001459444.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli HS] gi|188494464|ref|ZP_03001734.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] gi|253772464|ref|YP_003035295.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037717|ref|ZP_04871775.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 1_1_43] gi|254162612|ref|YP_003045720.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli B str. REL606] gi|301026691|ref|ZP_07190102.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|331643363|ref|ZP_08344494.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|157067806|gb|ABV07061.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli HS] gi|188489663|gb|EDU64766.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 53638] gi|226839341|gb|EEH71362.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 1_1_43] gi|242378237|emb|CAQ33012.1| nrdE, subunit of ribonucleoside-diphosphate reductase 2, alpha subunit dimer and ribonucleoside-diphosphate reductase 2 [Escherichia coli BL21(DE3)] gi|253323508|gb|ACT28110.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974513|gb|ACT40184.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli B str. REL606] gi|253978680|gb|ACT44350.1| ribonucleotide-diphosphate reductase alpha subunit [Escherichia coli BL21(DE3)] gi|299879613|gb|EFI87824.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 196-1] gi|309703040|emb|CBJ02372.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli ETEC H10407] gi|315615062|gb|EFU95699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 3431] gi|331036834|gb|EGI09058.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H736] gi|332344557|gb|AEE57891.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli UMNK88] Length = 714 Score = 313 bits (802), Expect = 9e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|86359306|ref|YP_471198.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli CFN 42] gi|86283408|gb|ABC92471.1| ribonucleotide-diphosphate reductase, alpha subunit protein [Rhizobium etli CFN 42] Length = 693 Score = 313 bits (802), Expect = 9e-83, Method: Composition-based stats. Identities = 188/717 (26%), Positives = 294/717 (41%), Gaps = 84/717 (11%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R L+K R + + T L + E + +L + +F Sbjct: 9 GRIQLDKDRTAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDL 67 Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337 Y R F F +LG Y Y L +G R E + VA+ LA + E Sbjct: 68 FDQA--YARQFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD---EA 122 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 A + + + S F +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 123 LARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 182 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL H Sbjct: 183 GGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 242 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ +YG Sbjct: 243 PDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSP---YDVERVYGM 299 Query: 517 EF-----EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 F Y A + +KI A ++ + + FE+G+P+I F+D N + Sbjct: 300 PFTEISVTEKYREMVADARISK----KKIKAREFFQVIAEIQFESGYPYIMFEDTVNRAN 355 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYD 619 P G + SNLC+EI S + E CNLGS+N+ A D Sbjct: 356 PV--AGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAA-----MDSG 408 Query: 620 KLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 TI TA+R L V D+ + ++ +K N AIGLG M L I Y S E Sbjct: 409 DFGKTIETAIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEE 468 Query: 679 AVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV----- 732 V + +++HAI AS LA ERGA + F+ S + G + + Sbjct: 469 GVNFTNIYFYTVTYHAIRASNLLAVERGASFRGFENSKYASGDYFDKYTEQEWKPATEKV 528 Query: 733 ---RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 D+ ++ ++ W LK V T G+ N N A+ PT +I+ I + SI P + Sbjct: 529 QALFDKSGIHIPTQDDWVALKTGVMTTGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKI 588 Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 ++ G F+ DD + A Sbjct: 589 EIRKEGKIGRVYYPAPFM-------------------------------TDDNLDYYQDA 617 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +EI P +I++ + + +DQ SL + + + + ++ AW G+KT YY+R Sbjct: 618 YEIGPEKIIDTYAAATQHVDQGLSLTSFFRDTATTRDINKTQIYAWKKGIKTIYYIR 674 >gi|323966927|gb|EGB62355.1| ribonucleotide reductase [Escherichia coli M863] gi|327251393|gb|EGE63079.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli STEC_7v] Length = 714 Score = 313 bits (802), Expect = 9e-83, Method: Composition-based stats. Identities = 179/732 (24%), Positives = 301/732 (41%), Gaps = 73/732 (9%) Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254 ++ L ++ +Y + A + + + K ++A M + Sbjct: 5 TAERLTQETTDYHALNA---MLNIYDNAGRIQFDKDRQAVDAFMATHVRPNSVTFSSQQQ 61 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 + EG + ++ L +LG Y Y L +G R Sbjct: 62 RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + F RV M + A + + + S F +TPT N G R +L SCF Sbjct: 122 Y--LEDFADRVTMVALTLAQGDKTLATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCF 179 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 +NA LFSP D+ +YGK F +IA + + E + I+A ++++ Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADIAISEHYAELVADERIRKKYINARDFFQRLAE 356 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + S Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQINSASEYDENLDYARTGHDIS 414 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + + D A T+ TAVR L V D+ + ++ + N AIGLG M Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534 Query: 723 IDS----IGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 EL + +R W +L+ V G+ N N A+ PT +I+ Sbjct: 535 SQYLQGNWQPKTAKVGELFARSSITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594 Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ +G F+ N Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 684 WRKGIKTLYYIR 695 >gi|261342123|ref|ZP_05969981.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] gi|288315454|gb|EFC54392.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cancerogenus ATCC 35316] Length = 693 Score = 313 bits (802), Expect = 9e-83, Method: Composition-based stats. Identities = 175/679 (25%), Positives = 290/679 (42%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 + ++EG + +V L +LG Y Y L +G Sbjct: 40 QRLDYLVKEGYYEERVLARYGRDAIVKLFEHAHARGFRFQTFLGAWKYYTSYTLKTFDGK 99 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + + VA+ LA + E AV+ + + S F +TPT N+G +L S Sbjct: 100 RYLETFEDRVVMVALTLAQGD---EALAVQLTDEILSGRFQPATPTFLNAGKAQRGELVS 156 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 157 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 216 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ I D+ Sbjct: 217 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVITDITF 276 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549 + +NA LFSP D+ LYGK F ++A + + + I+A ++ + Sbjct: 277 QLAKENADMALFSP---YDIERLYGKAFGDVAISERYDELVADDRIRKKYINARDFFQTL 333 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I ++D N +P G ++ SNLC+EI + + Sbjct: 334 AEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNAASTYDENLDYADVGKD 391 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D T+ TAVR L V D+ + ++ + N AI Sbjct: 392 ISCNLGSLNIAHT-----MDSPDFGRTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAI 446 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L I Y SPE ++ + I++HA+ S+ LA+ER ++ F+ S Sbjct: 447 GLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALHTSMMLARERGQRFAGFEQSR 506 Query: 716 WDQGVFP-----IDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + D +VR A + +R W +L+ V G+ N N A+ Sbjct: 507 YASGEYFNQYLENDWQPKTEKVRQLFARAGVTLPTRAMWQQLRDEVMQHGIYNQNLQAVP 566 Query: 768 PTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 P+ +I+ I + SI P + ++ +G F+ N Sbjct: 567 PSGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTN------------------ 608 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + ++ A+EI P +I++ + K +DQ SL L+ + + + + Sbjct: 609 -------------ENLALYQDAYEIGPEKIIDTYAEATKHVDQGLSLTLFFPDTATTRDI 655 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 656 NRAQIYAWKKGIKTLYYIR 674 >gi|110806692|ref|YP_690212.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri 5 str. 8401] gi|110616240|gb|ABF04907.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella flexneri 5 str. 8401] gi|281602051|gb|ADA75035.1| Ribonucleoside-diphosphate reductase [Shigella flexneri 2002017] gi|313648325|gb|EFS12769.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2a str. 2457T] gi|332753900|gb|EGJ84275.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-671] gi|332755582|gb|EGJ85945.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2747-71] gi|332765625|gb|EGJ95838.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 2930-71] gi|333015921|gb|EGK35257.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-304] Length = 714 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D + T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|327198710|emb|CCA61411.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 580 Score = 313 bits (801), Expect = 9e-83, Method: Composition-based stats. Identities = 157/650 (24%), Positives = 258/650 (39%), Gaps = 100/650 (15%) Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 YE D ++ +GL + D Y PQ V + + Y Sbjct: 5 NYEMDKLYDSVGLLRMKDSYLSGGEA----SPQDRLASVCNQFGTDDDHR----RRLYEY 56 Query: 346 LSSFHFMCSTPTL-FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 S S+P L +N + SC+L + D + G+ L E L+ GG+ Sbjct: 57 ASKHWLSLSSPLLGYNKDKKMSYPISCYLLYLHDTVEGLIDTLSEANHLSVCGGGVSV-- 114 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 I N KS GV+ K + +A QG R+G+ YL+ H ++ F+D Sbjct: 115 ------KMGIRPLNDKSLGVVSHCKTYDSCVLAYKQGS-RRGSYAMYLDVSHPEILAFID 167 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +RK TGD R +++ A + D FM+ + + P ++ Sbjct: 168 IRKPTGDYNMRCLNIHNAICLSDKFMEIIER----CTEDPSA----------------DD 207 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHS 581 D V + +SA +W+K++ M +TG P++ F D CN + Sbjct: 208 SWDLVDPSTGVVKQTVSAKLIWQKIIEMRMQTGEPYLCFVDACNRDMNPYQKARGMKIEQ 267 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID---- 637 SNLCTE+ + ++ +++C L S+N+ + + I + +LDNV+ Sbjct: 268 SNLCTEVIVPTNETRSSLCCLASVNIEKYEE-----WKNNERFIGDTMEMLDNVLTEFER 322 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 H ++ S R IG+G++GF S L + + S EA + E ++++ Sbjct: 323 KATSHRFDRVNDSVKKERNIGIGVLGFHSYLQSVGVSIESEEAQRVNIEIFKWLNETCDK 382 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ++EL RG GS Sbjct: 383 YNLELGSRRGTPEDIAGS------------------------------------------ 400 Query: 757 GMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDL 815 G R + MA+APTAT + I G S SI+P N+Y + +SG N L + Sbjct: 401 GRRFAYTMAVAPTATTSIIMGNTSPSIEPFRANVYRQDTVSGSQFNKNKNLDRLFDSKGY 460 Query: 816 WDE---AMISDLKYHDGSIGNIER--IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + +DGS+ +++ I K + T E++ L+E A+ R K+IDQ Sbjct: 461 GPKLKAKLWTSIVANDGSVQHLDERFITKSEKDVFKTFIEVEQSKLVELAAGRHKYIDQG 520 Query: 871 QSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 QSL L + + + I+ QAW GLKT YYLRS + +K Sbjct: 521 QSLTLTFGPDEPVANIHRIHLQAWKSGLKTMYYLRSAKISRADKLNADDP 570 >gi|332753392|gb|EGJ83772.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri 4343-70] gi|333000677|gb|EGK20254.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella flexneri K-218] Length = 714 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N SP Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRASPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D + T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFSRTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|331684293|ref|ZP_08384885.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] gi|331077908|gb|EGI49114.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H299] Length = 714 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDIERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYAELVANERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|161508075|ref|YP_001578042.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus helveticus DPC 4571] gi|160349064|gb|ABX27738.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC 4571] Length = 729 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 181/750 (24%), Positives = 316/750 (42%), Gaps = 79/750 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ T + E NY +E + + + L E Sbjct: 15 DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 65 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ + + + + + + ++G Y Y L N ++ +E Sbjct: 66 YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 125 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + R M E+ A+ + S F +TPT N+G + + SC+L Sbjct: 126 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 182 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 183 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 242 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 243 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 302 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q + + ISA ++ + + Sbjct: 303 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPCIKKTFISARKFFQTIAEVQ 359 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 360 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 419 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL S + +V+ L+ V + KK N +RAIGLG Sbjct: 420 LGSLNIAAAMNSA----DKLGSLVSDSVQALNRVARSSDLDCAPSIKKGNKANRAIGLGA 475 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA++ GA+ FK S + G Sbjct: 476 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 535 Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I + E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 536 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 595 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + + V ++ Sbjct: 596 SYLSSCTPSLQPVVAPVETRKEAALGRIYVPAY--------------------------- 628 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 +I D + + A+E+ P +I+ + QK++DQ+ SL L+L++ + + L+ Y Sbjct: 629 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFLEDNATTRDLNKAYI 685 Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 A+ + YY+R R E T Sbjct: 686 YAFKKRCNSIYYVRIREKVLAGSENLTADE 715 >gi|314955749|gb|EFT00149.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL027PA1] Length = 950 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 135/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T QLS+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQLSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL N+ FD +K + + +D I E K+ R +G+G Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G Y + + Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ A+ ++ WD++ K T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835 I+P + + + K G +VN + LK + + + +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616 Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 617 DLDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYME 676 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S K + + A P +P S Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728 >gi|307547023|ref|YP_003899502.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] gi|307219047|emb|CBV44317.1| ribonucleotide-diphosphate reductase subunit alpha [Halomonas elongata DSM 2581] Length = 728 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 182/724 (25%), Positives = 295/724 (40%), Gaps = 87/724 (12%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + K AR + + + +K + +EEG + E Sbjct: 49 DADKEAARQYFLQHVNQNTVFFHTLEEKLDY-------------LVEEGYYEGEILEQYD 95 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332 + L + + +LG Y Y L +G R E + VA+ LA + Sbjct: 96 ASFVKALFDQAYALKFRFQSFLGAFKYYTSYTLKTFDGRRYLERFEDRVCMVALTLARGD 155 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391 E A + + F +TPT N G + +L SCFL + D++ I A+ Sbjct: 156 ---EALARTLVDEILHGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAINSAL 212 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + +R GA I +S GVIP +K+ D NQ G R+GA Y Sbjct: 213 QLSKRGGGVAFSLSNIRESGAPIKRIANQSSGVIPIMKLLEDAFSYANQLGARQGAGAVY 272 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 273 LNVHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNEPMYLFSP---YDVE 329 Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F E Y+ D I+ + A L++ + + FE+G+P++ F+D N Sbjct: 330 RVYGVPFGDISVTEKYQEMVDDARIRKTKT-DARELFQTLAELQFESGYPYVLFEDTANR 388 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETA------------VCNLGSINLLAHFANNQFD 617 G ++ SNLC+EI +S E CNLGS+N+ D Sbjct: 389 --DNPIAGRINMSNLCSEILQVNSPSEYDDDLDYRHTGEDISCNLGSLNIARV-----MD 441 Query: 618 YDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 +++ TAVR L V ++ + ++ ++N AIGLG M L HI Y S Sbjct: 442 SPDFGTSVETAVRALSAVSEMSDIRSVPSIAEANARSHAIGLGQMNLHGFLAREHIHYGS 501 Query: 677 PEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR-- 733 E ++ + I++HA+ AS LA ER ++ F+ S + G + + R Sbjct: 502 EEGLDFTNIYFYTITYHAVRASNRLAIERGERFAGFENSAYASGSYFDKYTENEWQPRTQ 561 Query: 734 ------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 D + +R W ELK V G+ N N A+ PT +I+ I + SI P Sbjct: 562 RVRELFDNAGIQIPTREDWRELKASVMQYGLFNRNLQAVPPTGSISYINHATSSIHPVVS 621 Query: 788 NLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 + ++ G +L DD + + Sbjct: 622 KIEIRKEGKLGRVYYPAPYL-------------------------------NDDNQDYYR 650 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905 A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 651 DAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRKGIKTIYYVRL 710 Query: 906 RSAT 909 R A Sbjct: 711 RQAA 714 >gi|260448267|gb|ACX38689.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli DH1] Length = 701 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFTHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|307314436|ref|ZP_07594041.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|306906004|gb|EFN36525.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli W] gi|323377463|gb|ADX49731.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli KO11] Length = 714 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPDTPTFLNCGKQPRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTTVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|331669413|ref|ZP_08370259.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA271] gi|332280667|ref|ZP_08393080.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] gi|331063081|gb|EGI34994.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA271] gi|332103019|gb|EGJ06365.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sp. D9] Length = 714 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|294155963|ref|YP_003560347.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma crocodyli MP145] gi|291600345|gb|ADE19841.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma crocodyli MP145] Length = 718 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 170/716 (23%), Positives = 288/716 (40%), Gaps = 80/716 (11%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 AR ++ + ++ E F ++ G L + Sbjct: 36 DHEAARLYMKHH-------------ALPNTKVFNSIKERFDYLVKHGYYEDELVKKYNIK 82 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 D+ L ++G Y+ Y L + Q R M Sbjct: 83 DIEKLRQYAIDYHFKFTSFMGALKFYNAYCLKSFDDTEYLEQYE-DRALMNALFIGDGNV 141 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + S + +TPT N+G + + SC+L V D++ I + + L+K Sbjct: 142 EVAQATLEEIMSGRYQPATPTFLNAGKKQRGEYISCYLLRVEDNMESIARGISTSLQLSK 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R LGA I ++ G++P +K+ D+ NQ G+R+GA YL Sbjct: 202 RGGGVALCLTNLRELGAPIKNIQNQATGIVPVMKILEDSFSYANQLGQRQGAGVVYLSAH 261 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DV FLD ++ D++ R ++ +PD+ + N LFSP +V YG Sbjct: 262 HPDVMTFLDTKRENADEKIRIKSLSLGLVLPDITFELAKNNEDMALFSPYDVQRE---YG 318 Query: 516 KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 K F E + + ISA L++ + + FE+G+P++ F D N RS Sbjct: 319 KAFSDISITKEYYNMLNNKNIKKTFISARKLFQTIAELHFESGYPYLLFDDTVNDRSA-- 376 Query: 575 HVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLA 622 H G + SNLC+EI SS E CNLGS+N+ D + Sbjct: 377 HPGRIIMSNLCSEIAQPSSETTYNPDLSFVKLGEDIACNLGSMNIDKLMQAGNKFSDSIY 436 Query: 623 STIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 I + N + + N +RAIGLG M L I Y + EAVE Sbjct: 437 RAIYALNHIATNS---DLSAAPSIQNGNKRNRAIGLGAMNLHGFLSTNSIYYNTKEAVEF 493 Query: 683 ADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEV--------- 732 D ++H+ AS +LA+E G +++F+ + + G + + Sbjct: 494 TDLFFYTFAYHSFKASNKLAKEGFGKFANFENTKFATGEYFDKYTKAKDDEYKPKSQIVA 553 Query: 733 --RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + ++ ++ W EL K ++ G+ NS+ MAIAPT +I+ + G + S+ P ++ Sbjct: 554 ELFKKFDVHIPTKQEWKELSKEIQKTGLANSHLMAIAPTGSISYLSGCTPSLQPVVADVE 613 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA-TAF 849 V+ V ++ +I ++ KK + A+ Sbjct: 614 VRKEGKLGRVYVPAY------------------------------KISEENKKYYQMGAY 643 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 E+ P+ +I+ + QK IDQA SL L++ + + + L+ Y A+ + YY+R Sbjct: 644 EVGPLPIIDVVAAAQKHIDQAISLTLFVKDTVTTRDLNKAYIYAFKQKCASIYYVR 699 >gi|183981656|ref|YP_001849947.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE [Mycobacterium marinum M] gi|183174982|gb|ACC40092.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE [Mycobacterium marinum M] Length = 721 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 177/737 (24%), Positives = 299/737 (40%), Gaps = 79/737 (10%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRREVLTTVYKKPQKATHHEMQCLY-PEY 255 + +S + E +Y + A L + R+VL Q + + E Sbjct: 10 VTTSAHALPGETDYHALNAMLNLYDADGKIQFDRDVLAARQFFLQHVNQNTVFFHNQDEK 69 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI 314 I E R + + + L + ++ +LG Y Y L +G R Sbjct: 70 LDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRY 129 Query: 315 -EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 E + + VA+ LA + A + + + F +TPT NSG + + SCF Sbjct: 130 LERFEDRVVMVALTLASGDAT---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCF 186 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I ++ L+K GG+ T +R GA I +S GVIP +K+ Sbjct: 187 LLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLE 246 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 247 DSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFEL 306 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 +N LFSP D+ +YG F + + ++ + I A ++ + Sbjct: 307 AKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDSRIRKTKIKAREFFQTLAE 363 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAV 599 + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 364 LQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDIS 421 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ AIGL Sbjct: 422 CNLGSLNIART-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGL 476 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWD 717 G M L HI Y S E V+ + + +HA+ AS +A ERG + F S + Sbjct: 477 GQMNLHGYLAREHIFYGSEEGVDFTNIYFYAVLYHALRASNRIAVERGTRFKGFDQSKYA 536 Query: 718 QGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G F + E + + + ++ W LK+ V+ G+ N N A+ PT Sbjct: 537 SGEFFDKYTERVWEPKTEKVRQLFADAGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPT 596 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + ++ G ++ N Sbjct: 597 GSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTN-------------------- 636 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 637 -----------ENLDYYQDAYEIGYEKIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNK 685 Query: 888 IYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 686 AQIYAWRKGIKTLYYIR 702 >gi|323467362|gb|ADX71049.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus helveticus H10] Length = 727 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 179/750 (23%), Positives = 314/750 (41%), Gaps = 79/750 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ T + E NY +E + + + L E Sbjct: 13 DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 63 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ + + + + + + ++G Y Y L N ++ +E Sbjct: 64 YLVDNNYYDKKVLDLYTPKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 123 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + R M E+ A+ + S F +TPT N+G + + SC+L Sbjct: 124 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 180 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 181 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 240 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 241 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 300 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q + + ISA ++ + + Sbjct: 301 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPCIKKTFISARKFFQTIAEVQ 357 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 358 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 417 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL + +V+ L+ V + KK N +RAIGLG Sbjct: 418 LGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDCAPSIKKGNKANRAIGLGA 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA++ GA+ FK S + G Sbjct: 474 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 533 Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I + E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 534 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 593 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + V ++ Sbjct: 594 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 626 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 +I D + + A+E+ P +I+ + QK++DQ+ SL L++++ + + L+ Y Sbjct: 627 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 683 Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 A+ + YY+R R E T Sbjct: 684 YAFKKRCNSIYYVRVREKVLAGSENLTADE 713 >gi|15803195|ref|NP_289227.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 EDL933] gi|15832792|ref|NP_311565.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. Sakai] gi|168750918|ref|ZP_02775940.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|168755420|ref|ZP_02780427.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|168762470|ref|ZP_02787477.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|168768766|ref|ZP_02793773.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|168774793|ref|ZP_02799800.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|168778657|ref|ZP_02803664.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|168800560|ref|ZP_02825567.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|195938429|ref|ZP_03083811.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC4024] gi|208808050|ref|ZP_03250387.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208813711|ref|ZP_03255040.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208819046|ref|ZP_03259366.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209398305|ref|YP_002272141.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|217327374|ref|ZP_03443457.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254794622|ref|YP_003079459.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. TW14359] gi|291284008|ref|YP_003500826.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|12517114|gb|AAG57785.1|AE005496_8 ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. EDL933] gi|13363009|dbj|BAB36961.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli O157:H7 str. Sakai] gi|187769664|gb|EDU33508.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4196] gi|188014971|gb|EDU53093.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4113] gi|189003146|gb|EDU72132.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4076] gi|189357239|gb|EDU75658.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4401] gi|189361996|gb|EDU80415.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4486] gi|189367236|gb|EDU85652.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4501] gi|189377190|gb|EDU95606.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC508] gi|208727851|gb|EDZ77452.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4206] gi|208734988|gb|EDZ83675.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4045] gi|208739169|gb|EDZ86851.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4042] gi|209159705|gb|ACI37138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. EC4115] gi|209762248|gb|ACI79436.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762250|gb|ACI79437.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762252|gb|ACI79438.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762254|gb|ACI79439.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|209762256|gb|ACI79440.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli] gi|217319741|gb|EEC28166.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O157:H7 str. TW14588] gi|254594022|gb|ACT73383.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. TW14359] gi|290763881|gb|ADD57842.1| Ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli O55:H7 str. CB9615] gi|320189006|gb|EFW63665.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. EC1212] gi|320646029|gb|EFX15006.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. 493-89] gi|320651329|gb|EFX19760.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H- str. H 2687] gi|320656720|gb|EFX24608.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662263|gb|EFX29660.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O55:H7 str. USDA 5905] gi|320667314|gb|EFX34272.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. LSU-61] gi|326338610|gb|EGD62436.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1044] gi|326342862|gb|EGD66630.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. 1125] Length = 714 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 292/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + + + + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|327189836|gb|EGE56974.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium etli CNPAF512] Length = 734 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 184/739 (24%), Positives = 299/739 (40%), Gaps = 85/739 (11%) Query: 196 SDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY 255 L+ + + L + E R L+K + + T L + Sbjct: 32 EALDYHALNAMLNLYDDE-------GRIQLDKDHMAAKQYFLQHVNQNTVF-FHNLREKL 83 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313 E + +L + +F Y R F F +LG Y Y L +G R Sbjct: 84 DYLVTEGYYEQEVLDQYSFNFVRDLFDQA--YARKFRFPTFLGAFKYYTSYTLKTFDGKR 141 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + VA+ LA + E A + + + S F +TPT N+G + +L SC Sbjct: 142 YLERYEDRICMVALTLARGD---EALARDMVDEIISGRFQPATPTFLNAGKKQRGELVSC 198 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL V D++ I ++ L+K GG+ T +R GA I +S G+IP +K+ Sbjct: 199 FLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLL 258 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ +PD+ + Sbjct: 259 EDSFSYANQLGARQGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFE 318 Query: 492 RVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 N LFSP +V ++ Y A + +KI A ++ + Sbjct: 319 LAKNNEDMYLFSPYDVERVYGVPFTEISVTEKYREMVADARISK----KKIKAREFFQVL 374 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597 + FE+G+P+I F+D N +P VG + SNLC+EI S + E Sbjct: 375 AEIQFESGYPYIMFEDTVNRANPI--VGRISMSNLCSEILQVSEASEYNDDLSYKHLGKD 432 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ A D TI T++R L V D+ + ++ +K N AI Sbjct: 433 ISCNLGSLNIAAA-----MDTADFGKTIETSIRALTAVSDMSHIASVPSIEKGNDESHAI 487 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L I Y S E V+ + +++HAI AS LA ER ++ F+ S Sbjct: 488 GLGQMNLHGYLARERIFYGSEEGVDFTNIYFYTVTYHAIRASNLLAVERGQSFKGFENSK 547 Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + + D+ ++ ++ W LK V T G+ N N A+ Sbjct: 548 YASGDYFDKYTEQEWKPATGKVQALFDDAGIHIPTQDDWAALKTAVMTSGLYNQNLQAVP 607 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G F+ N+ Sbjct: 608 PTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPFMTND----------------- 650 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + A+EI +I++ + + +DQ SL L+ + + + + Sbjct: 651 --------------NLDYYQDAYEIGAEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 696 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 697 NKAQIYAWRKGIKTIYYIR 715 >gi|300932706|ref|ZP_07147962.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium resistens DSM 45100] Length = 720 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 175/743 (23%), Positives = 303/743 (40%), Gaps = 73/743 (9%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 ++ S++ + ++ +Y + A L + ++ + Sbjct: 1 MTTSEIGKTVAEPVSE--SEQLDYHALNAMLNLYDKNGNIQFDKDREAANQFFLQHVNQN 58 Query: 253 PEYFCRYIEEGVKARLLHES----MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF-- 306 +F E+ + ++D ++ + K F + Y Y Sbjct: 59 TVFFHDLQEKLHYLVENKYYDKSVLDNYDFPFVKSLFKRAYAKKFRFQSFLGAYKYYTSY 118 Query: 307 --LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 NG R E + VA+GLA A + + + F +TPT N G Sbjct: 119 TLKTFNGKRYLERFEDRVCMVALGLAAG---NRALAEDLVDEIMDGRFQPATPTFLNIGK 175 Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 + SCFL + D++ I ++ L+K GG+ + +R GA I +S Sbjct: 176 AQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREAGAPIKHIENQSS 235 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GVIP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 236 GVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLG 295 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKI 540 IPD+ + N LFSP D+ +YGK F E+YE + I+ + I Sbjct: 296 VVIPDITFELAKNNDDMYLFSP---YDVERIYGKAFADVPVSEHYEEMVEDPRIRKQK-I 351 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSS 593 +A ++ + + FE+G+P+I F+D N +P G + SNLC+EI N+ Sbjct: 352 NARQFFQTLAEIQFESGYPYIMFEDTVNRANPI--EGRITHSNLCSEILQVSTPSVFNAD 409 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHT 652 + + S NL + D + + TI TA+R L V D + ++ ++ N Sbjct: 410 LTYETIGDDISCNLGSLNIAKAVDSENFSKTIETAIRGLTAVADQTSIDSVPSVRQGNDN 469 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711 AIGLG M L HI Y S EA++ + + + AI AS +A+ER ++++F Sbjct: 470 SHAIGLGQMNLHGFLGREHIHYGSEEALDFTNVYFAAVMYEAIKASNTIAKERGESFTNF 529 Query: 712 KGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNC 763 + S + G F P + + VR+ + + + W LKK V+ G+ N N Sbjct: 530 ENSDYASGEFFDRYDPAEFQPITERVREIIENSSIQVPTADDWAALKKSVQEHGLYNRNL 589 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 590 QAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTN-------------- 635 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 + + A+EI +I++ + K++DQ SL L+ + + Sbjct: 636 -----------------ENLDYYEDAYEIGFEKIIDTYAVATKYVDQGLSLTLFFKDTAT 678 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 679 TRDINRAQIYAWRKGIKTIYYIR 701 >gi|311742740|ref|ZP_07716549.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM 15272] gi|311314368|gb|EFQ84276.1| ribonucleoside-diphosphate reductase [Aeromicrobium marinum DSM 15272] Length = 970 Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats. Identities = 132/629 (20%), Positives = 239/629 (37%), Gaps = 29/629 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G E + E E ++L F ++P FN GT Q+S+CF+ V D + I Sbjct: 113 GYFTTEADAEVFEHELTHMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILN 172 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + + G + G + F++ A+ +A + G R Sbjct: 173 WYREEGLIFKGGSGAGLNLSRIRSSKELLRSSGGTASGPVSFMRGADASAGTIKSGGATR 232 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+ EF+ + D R D + + V + Sbjct: 233 RAAKMVVLDVDHPDIAEFVATKAREEDKIRVLRDAGYDMDLGGADITSVQ------YQNA 286 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + ++D + + E E R GE V + A +LW + + P I + Sbjct: 287 NNSIRVNDEFMRAVEDGTEFGLRGRMTGE--VIETVDARSLWNDIAEAAWACADPGIQYD 344 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 N G + +SN C+E + + CNL S+NLL ++ FD + Sbjct: 345 GTINDWHTSPEAGRITASNPCSEYMH----LDNSSCNLASLNLLKFLKDDGSFDTETFVK 400 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E + +R +G+G + L + Y S +A Sbjct: 401 AVEFIITAMDISICFADFPTEAIGDTTRAYRQLGIGFANLGALLMASGLAYDSDGGRALA 460 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739 ++ + S ELA G Y F + E+R ++A++ Sbjct: 461 GAITSLMTGTSFRRSAELAGVVGPYDGFAQNASAHERVMRKHQAANDEIRTLHSMDIAVH 520 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 R + W + K + G RNS +APT TI + + I+P + + + K G Sbjct: 521 REAAKQWADNLKIGEKNGWRNSQASVLAPTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGG 580 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + LK+ E + + ++Y +G + + + + ++ TA I Sbjct: 581 SMQIVNQTIPAALKKLGYAGETIEAIVEYIAENGHVVDAPGLKTEHYEVFDTAMGQRSIK 640 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q ++ A S + L E S +++ +Y Q W +GLK R Sbjct: 641 PMGHVHMMAACQPFLSGAISKTVNLPESASVEEIKDVYFQGWKLGLKALAVYRDNCKVGQ 700 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 S G + K + + I Sbjct: 701 PLS--DGKEAKSSGDTKVEVKEVIVEKPI 727 >gi|293415926|ref|ZP_06658566.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|291432115|gb|EFF05097.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] Length = 714 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L + +LG Y Y L +G R + F RV M E Sbjct: 87 TLFDHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTCTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|331654158|ref|ZP_08355158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] gi|331047540|gb|EGI19617.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M718] Length = 714 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYPRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|300922751|ref|ZP_07138840.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|301327385|ref|ZP_07220634.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] gi|300420936|gb|EFK04247.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 182-1] gi|300846039|gb|EFK73799.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 78-1] Length = 701 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|331674196|ref|ZP_08374956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] gi|331068290|gb|EGI39685.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA280] Length = 714 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFITTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYDELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERSETFAGFKQSRYASGEYFRQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|325496275|gb|EGC94134.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia fergusonii ECD227] Length = 714 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 176/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAGDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G R +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYAELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ AV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVEIAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNRT-- 741 I++HA+ S+ LA+ER ++ FK S + G + EL + Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSSIT 559 Query: 742 --SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|296128312|ref|YP_003635562.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas flavigena DSM 20109] gi|296020127|gb|ADG73363.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas flavigena DSM 20109] Length = 719 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 169/675 (25%), Positives = 277/675 (41%), Gaps = 62/675 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +E + + L ++ +LG Y Y L +G Sbjct: 65 DEKLDYLVENKYYDPAVLAQYDRAFIKSLFQYAYSKKFRFQTFLGAFKYYTSYTLKTFDG 124 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + RV M + A+ + + S F +TPT N G + Sbjct: 125 KRYLERFED---RVCMVALALAEGDQDFAMNLVDEIVSGRFQPATPTFLNLGKAQRGEPV 181 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I + L+K GG+ + +R GA I +S GVIP +K Sbjct: 182 SCFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVMK 241 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 242 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 301 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I+A ++ Sbjct: 302 FELAKKNEPMYLFSP---YDVERVYGVPFADVNVTEKYYEMVDDKRIRKTKINAREFFQT 358 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCN 601 + + FE+G+P++ F+D N +P G + SNLC+EI T N V Sbjct: 359 LAEIQFESGYPYVMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSTFNEDLSYDHVGR 416 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGL 660 S NL + D L T+ TA+R L V D N ++ K++N AIGLG Sbjct: 417 DISCNLGSMNIALSMDSPDLGKTVETAIRALTAVSDQTNIESVPSIKRANAGGHAIGLGQ 476 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L I Y S E ++ + +++HAI AS LAQER A + F+ S + G Sbjct: 477 MNLHGYLARERIFYGSDEGLDFTNIYFYTVAYHAIRASNLLAQERKASFFGFERSAYATG 536 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + + + R DE ++ ++ W EL + V+ G+ N N A+ PT + Sbjct: 537 EYFTKYVEKEWKPRTARVQALFDEAGVHIPTQDDWRELAELVRVHGLYNQNLQAVPPTGS 596 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G F+ N+ Sbjct: 597 ISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAPFMTND--------------------- 635 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + A+EI +I++ + + +DQ SL L+ + + + L+ Sbjct: 636 ----------NLEYYQDAYEIGFEKVIDTYAEATQHVDQGLSLTLFFKDTATTRDLNKAQ 685 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 686 IYAWKKGIKTIYYIR 700 >gi|16130589|ref|NP_417161.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|89109468|ref|AP_003248.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. W3110] gi|170082261|ref|YP_001731581.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|238901819|ref|YP_002927615.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli BW2952] gi|2507305|sp|P39452|RIR3_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha; AltName: Full=R1E protein; AltName: Full=Ribonucleotide reductase 2 gi|1789030|gb|AAC75722.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. MG1655] gi|85675520|dbj|BAA16539.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K12 substr. W3110] gi|169890096|gb|ACB03803.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli str. K-12 substr. DH10B] gi|238863479|gb|ACR65477.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli BW2952] gi|315137288|dbj|BAJ44447.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli DH1] Length = 714 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFTHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|296393702|ref|YP_003658586.1| ribonucleoside-diphosphate reductase subunit alpha [Segniliparus rotundus DSM 44985] gi|296180849|gb|ADG97755.1| ribonucleoside-diphosphate reductase, alpha subunit [Segniliparus rotundus DSM 44985] Length = 732 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 277/680 (40%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +E + E + L + ++ +LG Y Y L +G Sbjct: 78 DEKLDYLVENEYYEPEVLERYSRPFVKGLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDG 137 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA E+ A + + F +TPT N G + + Sbjct: 138 KRYLERFEDRVVMVALALA---DGDEELACQLVEEIIEGRFQPATPTFLNCGKKQRGEPV 194 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 195 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVMK 254 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 255 LLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 314 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRK 548 + +N LFSP D+ +YG F + + E +KI+A ++ Sbjct: 315 FELAKRNDDMYLFSP---YDVERVYGVPFAEVSVTEKYFEMVDDERIRKKKINAREFFQT 371 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I ++D N +P G + SNLC+EI S + Sbjct: 372 IAELQFESGYPYIMYEDTVNRANPI--DGRITHSNLCSEILQVSTASTFNADLSYSHVGK 429 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D T+ T++R L +V D ++ N A Sbjct: 430 DISCNLGSLNIAKT-----MDSPDFGKTVETSIRALTSVSDQTRIDSVPSIAHGNDESHA 484 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y S E V+ + + +HA+ AS ++A ER A++ F+ S Sbjct: 485 IGLGQMNLHGYLARERIHYGSEEGVDFTNIYFYTVLYHALWASNKIAVERGRAFAGFERS 544 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + ++ W+ LK V G+ N N A+ Sbjct: 545 KYASGEFFDKYLNQTWEPKTERVRELFKRAKVQIPTKADWERLKDSVVAHGIYNQNLQAV 604 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G +L N+ Sbjct: 605 PPTGSISYINHSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLAND---------------- 648 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 649 ---------------NLDYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 693 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 694 INKAQIYAWRKGIKTLYYIR 713 >gi|262203178|ref|YP_003274386.1| ribonucleoside-diphosphate reductase subunit alpha [Gordonia bronchialis DSM 43247] gi|262086525|gb|ACY22493.1| ribonucleoside-diphosphate reductase, alpha subunit [Gordonia bronchialis DSM 43247] Length = 731 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 176/736 (23%), Positives = 293/736 (39%), Gaps = 81/736 (11%) Query: 197 DLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYF 256 +L+ + + L + + R EK R + + T E Sbjct: 30 ELDYHALNAMLNLYDAD-------GRIQFEKDREAARQYFLQHVNQNTVFFHDL--DEKL 80 Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI- 314 +EE + + L ++ +LG Y Y L +G R Sbjct: 81 DYLVEENYYEPEVLARYDREFVKSLFGHAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYL 140 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E + VA+ LA A + + F +TPT NSG + + SCFL Sbjct: 141 ERFEDRVCMVALTLA---DGDTALARNLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFL 197 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 198 LRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIMKLLED 257 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 258 SFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQLA 317 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTM 552 N LFSP D+ +YG F + + ++ + I A ++ + + Sbjct: 318 KANDDMYLFSP---YDVERVYGVPFADINVTDKYHEMVEDKRIRKTKIKAREFFQTLAEL 374 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVC 600 FE+G+P+I F+D N +P G + SNLC+EI S + C Sbjct: 375 QFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSTFNDDLSYSHVGKDISC 432 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659 NLGS+N+ D L TI TA+R L V D ++ +K N+ AIGLG Sbjct: 433 NLGSLNIAKA-----MDSPDLGQTIETAIRGLTAVSDQTAITSVPSIEKGNNDSHAIGLG 487 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718 M L I Y S E ++ + + +HA+ AS ++A+ERG ++ F+ S + Sbjct: 488 QMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNKIARERGHSFAGFEKSKYAS 547 Query: 719 GVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 G F + E + ++ ++ W ELK V G+ N N A+ PT Sbjct: 548 GEFFDKYTEKVWEPETQKVRDLFGQAGIHIPTQDDWRELKAAVARDGIYNQNLQAVPPTG 607 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + ++ G F+ N+ Sbjct: 608 SISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPFMDND-------------------- 647 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 648 -----------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNRA 696 Query: 889 YRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 697 QIYAWRKGIKTLYYIR 712 >gi|31544247|ref|NP_852825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. R(low)] gi|5565930|gb|AAD45273.1|AF152114_1 ribonucleoside-diphosphate reductase alpha chain [Mycoplasma gallisepticum] gi|31541091|gb|AAP56393.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. R(low)] gi|284930286|gb|ADC30225.1| Ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma gallisepticum str. R(high)] Length = 722 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 183/734 (24%), Positives = 302/734 (41%), Gaps = 97/734 (13%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311 E I+ + + E++ L L +K E D F ++G Y+ Y L N Sbjct: 53 HERMDYLIKNDFYEKEVVENVSKEQLEELYGVIK-EFDHEFPSFMGAFKFYNSYCLKSND 111 Query: 312 SR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 + E + A+ L K + + S F +TPT N+G + + Sbjct: 112 GKEFYETYSERCLMNALFLGGKNFQNV---KNILIEILSGRFQPATPTFLNAGKKQRGEY 168 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SC+L V D++ I A+ + L+K GG+ T +R GA I G++ GVIP + Sbjct: 169 VSCYLLRVEDNMESIGRAIVTSLQLSKRGGGVALCLTNLREFGAPIKNIEGQASGVIPVM 228 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G+R G AYL H DV FLD ++ D++ R + +PD+ Sbjct: 229 KILEDSFSYANQLGQRPGVGVAYLHAHHPDVMVFLDSKRENADEKIRIKSLALGLVVPDI 288 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547 + N LFSP +V YGK F E ++ + ISA ++ Sbjct: 289 TFELAKNNEQMALFSPYDVQRE---YGKPFSDIKVTEEYHNMVNNPRIKKTYISARKFFQ 345 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597 + + FE+G+P++ F D N R + G + SNLC+EI +S+S E Sbjct: 346 TIAELHFESGYPYLLFDDTVNNR--NPNAGRIVMSNLCSEIVQSSTSTEYNEDFSIKKLG 403 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHR 654 CNLGS+N+ + ++ ++ A++ LD+V N K N + Sbjct: 404 QDISCNLGSVNIDKMMRSA----ERFEDSVYYAIKSLDHVSKSANLDCAPSVKNGNANNH 459 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 A+GLG M L I Y SPEA+E D ++++A AS LA E+ Y++FK Sbjct: 460 ALGLGAMNLHGFLATHEIYYDSPEALEFTDFFFYTLAYYAFKASNRLAVEQKQTYANFKT 519 Query: 714 SLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 S + G + E+ + ++ W L + +K G+ N++ Sbjct: 520 SKYADGSYFDKYTKCDPNTYVIKNPKIKEIFSNYKIKVPTQADWQALTEEIKKTGLANAH 579 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +AIAPT +I+ + + SI P + V+ G V Sbjct: 580 LLAIAPTGSISYLSSCTPSIQPVVAPVEVR--KEGKIGRV-------------------Y 618 Query: 823 DLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 L Y + + K + A+E+ P I+ ++ QK +DQA SL L++++ Sbjct: 619 SLAYK---------LNEHNYKYYKDGAYELGPNPYIDICAQAQKHVDQAISLTLFMNDTA 669 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGI 940 + + L+ Y +A+ + YY+R R ++ N D S+ Sbjct: 670 TTRDLNKAYIRAYKSKCASVYYVRVR---------QNVLEDSENLDWAKDQASTV----- 715 Query: 941 PSSCTSDTECEVCQ 954 +CE CQ Sbjct: 716 --------DCEACQ 721 >gi|84495900|ref|ZP_00994754.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp. HTCC2649] gi|84382668|gb|EAP98549.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp. HTCC2649] Length = 987 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 133/637 (20%), Positives = 233/637 (36%), Gaps = 40/637 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L DR L + E + + E E L F Sbjct: 88 RETGLKQLIDRVVLTYVKAGKE----------HDYFSSDEDAELFEHELTYALLHQVFSF 137 Query: 354 STPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ V D + I +E + K G G + + +R Sbjct: 138 NSPVWFNVGTASPQQVSACFILAVDDSMDSILNWYKEEGFIFKGGSGAGLNLSRIRSSKE 197 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H D+ EF++ + D Sbjct: 198 LLSS-GGTASGPVSFMRGADASAGTIKSGGATRRAAKMVVLDVDHPDIVEFVETKAREED 256 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + + ++D + + E E + R Sbjct: 257 KIRALRDAGFDMDL------GGKDIVSVQYQNANNSVRVNDEFMRAVEEGTEFGLK--SR 308 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 G+ V I A L K+ +E P I + D N G + +SN C+E Sbjct: 309 GDGSVIETIDARELMGKIAKAAWECADPGIQYDDTINDWHTNPETGRITASNPCSEYM-- 366 Query: 592 SSSEETAVCNLGSINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 S + + CNL S+NLL ++ FD K + +D I E K+ Sbjct: 367 --SLDNSSCNLASLNLLKFLKDDDTFDVVKFQQVAELVITAMDISICFADFPTEPIAKTT 424 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R +G+G + L Y S +A ++ A S E+A G Y+ Sbjct: 425 RDYRQLGIGYANLGALLMATGHGYDSDGGRALAASITSLLTGAAYKRSAEIAGVVGPYAG 484 Query: 711 FKGSLWDQGVFPIDSIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + + +R + ++R + WD + K + G RN+ + Sbjct: 485 YARNADAHKRVMRKHASANDSIRTMQTMDKDIHRAATKAWDAVVKVGEKNGYRNAQASVL 544 Query: 767 APTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 APT TI + + I+P + + + K G +VN + L++ + E + + Sbjct: 545 APTGTIGFMMDCDTTGIEPDFSLVKFKKLVGGGSMQIVNLTIPRALRKLG-YTEETVEAI 603 Query: 825 KYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLD 878 G + + + + +I TA I M + + Q ++ A S + L Sbjct: 604 VEFIADKGHVIDAPGLKTEHYEIFDTAMGARSISAMGHVRMMAATQPFLSGAISKTVNLP 663 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + S +++ +Y Q W MGLK R S Sbjct: 664 EDASVEEIQDVYMQGWKMGLKALAVYRDSCKVGQPLS 700 >gi|296118679|ref|ZP_06837255.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968168|gb|EFG81417.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium ammoniagenes DSM 20306] Length = 723 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 170/754 (22%), Positives = 295/754 (39%), Gaps = 81/754 (10%) Query: 180 IVLSETYKNMYDGLSESD-LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYK 238 V + K + + + S+ L+ + + L +++ + + RE + Sbjct: 3 QVTQQLGKTVAEPVKTSEKLDFHALNALLNLYDEDGK--------IQFDMDREAANQYF- 53 Query: 239 KPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLG 297 H +Y IE V+ + +++ +D ++ + K F F + Sbjct: 54 ----LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKS 109 Query: 298 LQILYDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 Y Y +G R E + RV+M A + + S F Sbjct: 110 FLGAYKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQ 166 Query: 353 CSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPT N+G +L SCFL + D++ I A+ + L+K GG+ + +R G Sbjct: 167 PATPTFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESG 226 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A I +S G+IP +K+ D NQ G R+GA YL H D+ FLD ++ D Sbjct: 227 APIKHIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENAD 286 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQA 529 ++ R ++ IPD+ +N LFSP +V ++ Y Sbjct: 287 EKIRIKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVTEHYAEMVEDP 346 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + +KI+A ++ + + FE+G+P+I F+D N +P G ++ SNLC+EI Sbjct: 347 RITK----KKINARHFFQTVAELQFESGYPYIMFEDTVNDANP-VKTGRINMSNLCSEIL 401 Query: 590 LNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCH 641 +S S NL + D + T+ A+R L V D Sbjct: 402 QVNSPSSFNADLSYEQMGSDISCNLGSMNIALAMDSPDFSGTVEAAIRGLTAVADKTAID 461 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 ++ + N AIGLG M L HI Y S E ++ + + + A+ AS ++ Sbjct: 462 SVPSIRHGNDQSHAIGLGQMNLHGFLGREHIYYGSEEGLDFTNAYFAAVMYAALRASNKI 521 Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKR 752 A+ER +S FK S + G F + + + ++ S W +LK + Sbjct: 522 AKERGETFSEFKDSEYASGAFFDRYDPAEFAPQTDKVKALFADSTIHTPSAEDWADLKAQ 581 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811 V G+ N N A+ PT +I+ I + SI P + ++ G + N+ Sbjct: 582 VMEHGLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND-- 639 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 A+EI +I++ + K++DQ Sbjct: 640 -----------------------------NLDYFQDAYEIGHEKIIDTYAIATKYVDQGL 670 Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 SL L+ + + + ++ AW G+KT YY+R Sbjct: 671 SLTLFFKDTATTRDINKAQIYAWRKGIKTLYYIR 704 >gi|325969910|ref|YP_004246101.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta sp. Buddy] gi|324025148|gb|ADY11907.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta sp. Buddy] Length = 836 Score = 312 bits (800), Expect = 2e-82, Method: Composition-based stats. Identities = 148/634 (23%), Positives = 263/634 (41%), Gaps = 63/634 (9%) Query: 311 GSRIE-MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +E P RVA G+A E + + + EF LL + F+ L +GT Sbjct: 79 DKPLEIDPAQMLARVAKGIASIEKQEVRTQWETEFNWLLEDWKFVPGGRILTGAGTDQNL 138 Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +C++ P D GI +L + + GG+G + + +R +++ G NG+S G + Sbjct: 139 TYFNCYVIPSPKDSRGGIIASLGQMTEIMSRGGGVGMNISSLRPRHSYVKGVNGRSSGSV 198 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 + + + + QGG R+GA+ L WH D+ +F++ ++ G + + N + I Sbjct: 199 SWGGLFSFVTGLIEQGGSRRGALMLILNVWHPDIIDFINSKREMG----KITNANISVGI 254 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V ++A W + PD ++ + + +A+ ++ V++ A + Sbjct: 255 TDDFMEAVRKDANWDTYFPDTTDPAYNTEWDG-----DINKWKANGHKVVVYQTQKAKKI 309 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ + + P + F D N S + + S+N C E L VCNLGSI Sbjct: 310 WDAIVESAWASAEPGVFFIDRYNKMSNSWYYSTIQSTNPCGEQGLPP----WGVCNLGSI 365 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL N + Y L +R AVR LDNVID + E+ KK + R IGLG MG Sbjct: 366 NLSRFVENKKVLYKDLGRAVRAAVRFLDNVIDDTPYFFEENKKQQLSERRIGLGTMGLAD 425 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L + +PY S E++ +E +FI + S S +LA+E+G++ F Sbjct: 426 MLIKMELPYGSEESLTFIEELYKFICIESYSESSDLAKEKGSFPFFDA------------ 473 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 ++L + + +E+ +V+ G+RN + APT T + S I+P Sbjct: 474 --------EKLLQSGFMKQMPEEICTKVRKQGLRNVTLLTQAPTGTTGTMVNTSTGIEPY 525 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 Y + ++ G I +K +D + Sbjct: 526 YFWEWERTGRMGSN---------------------IERVKVYDDWVKAHPG--QKKPAYF 562 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 +A ++ P ++ + QKW+D + S E + ++ +Y + +G K R Sbjct: 563 VSAMDLAPEGHVKVQAAIQKWVDSSISKTGNTPKEYTIEQTGKLYELLYDLGCKGGTTYR 622 Query: 905 SRSA-TSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 S T V + + + V ++ Sbjct: 623 DGSRDTQVLTAKKEEKEELKEEKLVVSRSTEPKP 656 >gi|269957221|ref|YP_003327010.1| ribonucleoside-diphosphate reductase subunit alpha [Xylanimonas cellulosilytica DSM 15894] gi|269305902|gb|ACZ31452.1| ribonucleoside-diphosphate reductase, alpha subunit [Xylanimonas cellulosilytica DSM 15894] Length = 718 Score = 312 bits (800), Expect = 2e-82, Method: Composition-based stats. Identities = 170/678 (25%), Positives = 276/678 (40%), Gaps = 74/678 (10%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--INGS 312 +E E + L L Y +DF F +LG Y Y L Sbjct: 67 LAYLVENKYYEAATLEKYSPAFVKEL-FQLAYSKDFRFDTFLGAFKYYTSYTLKTFDGKK 125 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 +E + RV+M E+ A + + + F +TPT N G + SC Sbjct: 126 YLERFED---RVSMVALGLADGDEQLARDIVEEVVAGRFQPATPTFLNIGKAQRGEPVSC 182 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I + L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 183 FLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREHGAPIKHIQNQSSGVIPVMKLL 242 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 243 EDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDVTFE 302 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKML 550 QN LFSP D+ +YG F + + + ++ + ISA ++ + Sbjct: 303 LAKQNKDMHLFSP---YDVERVYGVPFADVSISEKYDELVADDRIRKTTISARDFFQTLA 359 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598 + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 360 ELQFESGYPYIMFEDTVNKANPI--KGRITHSNLCSEILQVSTPSTFNEDLSYDHVGRDI 417 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ D TI TA+R L V D + ++ K +N AIG Sbjct: 418 SCNLGSLNIAKA-----MDSPDFGHTIDTAIRALTAVSDQTSIESVPSVKHANELGHAIG 472 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L + Y S E V+ + +++HAI+AS LA ER A+ F+ S + Sbjct: 473 LGQMNLHGYLARERVFYGSEEGVDFTNIYFYTVAYHAIAASNRLAIERGRAFGGFEDSKY 532 Query: 717 DQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G + +A++ + + ++ W LK V G+ N N A+ P Sbjct: 533 ATGEYFDKYTEQEWTPATARVAQLFADAGVAIPTQDDWRALKASVMEHGIYNQNLQAVPP 592 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + ++ G F+ N+ Sbjct: 593 TGSISYINNSTSSIHPVPAKIEIRKEGKLGRVYYPAPFMTND------------------ 634 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 635 -------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTVTTRDVN 681 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 682 RAQIYAWRKGIKTLYYIR 699 >gi|111023402|ref|YP_706374.1| ribonucleotide-diphosphate reductase subunit alpha [Rhodococcus jostii RHA1] gi|110822932|gb|ABG98216.1| ribonucleoside-diphosphate reductase [Rhodococcus jostii RHA1] Length = 693 Score = 312 bits (800), Expect = 2e-82, Method: Composition-based stats. Identities = 169/680 (24%), Positives = 286/680 (42%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +EE + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLVEENYYEPEVLDQYSRAFVKSLIDHAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E+ A + + + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVCMVALTLAAGD---EELATKLVDEIIAGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ + VR GA I +S GVIP +K Sbjct: 156 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNVREHGAPIKKIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + KI A ++ Sbjct: 276 FELAKKNEDMYLFSP---YDVERIYGVPFADVNVTEKYYEMVDDKRIRKSKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI S + Sbjct: 333 IAELQFESGYPYIMFEDTVNRANPI--EGKITHSNLCSEILQVSTPSLFNDDLSYSEVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI ++R L V D + +++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFARTIEVSIRALTAVSDQTHIYSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + FHA+ AS +A ERG + F S Sbjct: 446 IGLGQMNLHGYLARERIYYGSDEGIDFTNIYFYTVVFHAVRASNRIAIERGTHFKGFPQS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + + E + E ++ ++ W ELK V+ G+ N N A+ Sbjct: 506 KYASGEYFDKYTDQVWEPKTERVRQLFAESGVHIPTQDDWRELKASVQKYGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G +L N+ Sbjct: 566 PPTGSISYINYSTSSIHPVASKIEIRKEGKIGRVYYPAPYLTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI ++++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYQDAYEIGYEKIVDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 655 INKAQIYAWRKGIKTLYYIR 674 >gi|117928683|ref|YP_873234.1| vitamin B12-dependent ribonucleotide reductase [Acidothermus cellulolyticus 11B] gi|117649146|gb|ABK53248.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidothermus cellulolyticus 11B] Length = 1098 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 119/590 (20%), Positives = 214/590 (36%), Gaps = 29/590 (4%) Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 ++ +CF+ +V D + I +E ++ K G G + + +R + G + G + Sbjct: 306 RVHNCFILSVDDTMESILDWYKEEGLIFKGGSGAGVNLSRIRSSKELLSS-GGTASGPVS 364 Query: 427 FLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 F++ A+ +A + G R+ A L+ H D+EEF++ + + R D + Sbjct: 365 FMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEEFIETKVREEEKIRVLRDAGFDMDL 424 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 + + + D + + E R GE V + A L Sbjct: 425 ------GGRDLYSVQYQNANNSVRVSDEFMRAVERGESFGLRARTTGE--VIETVDARKL 476 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +RKM + P I + D N G + +SN C+E + + CNL S+ Sbjct: 477 FRKMAEAAWACADPGIQYDDTINDWHTCPESGRITASNPCSEYMH----LDNSSCNLASL 532 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL+ + +FD D + + +D I EK + R +G+G Sbjct: 533 NLMKFLTDDGRFDIDTFIKVVELVITAMDISICFADFPTEKIADTTRRFRQLGIGYANLG 592 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L Y S +A ++ A S ELA G Y + + Sbjct: 593 ALLMATGHAYDSDGGRALAAAITSLMTATAYKRSAELAAIVGPYDGYARNAEAHKRVMRK 652 Query: 725 SIGLLAEVRDELAMNRT----SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 +R M+R + W E + G RNS +APT TI + Sbjct: 653 HAAASDALRTIGEMDRAIAERACQMWRECLTLGEQHGWRNSQASVLAPTGTIGLAMDCDT 712 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836 I+P + + K G +VN + L+ +E + + ++Y GS+ Sbjct: 713 TGIEPDLALVKFKKLVGGGSMQIVNRTVPRALRTLGYPEEQVEAIVEYISEHGSVVGAPG 772 Query: 837 IPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + + ++ A I PM + + Q +I A S + + E + + ++ IY Q Sbjct: 773 LRPEHYEVFDCAMGDRAISPMGHVRMMAAVQPFISGAISKTVNMPESATVEDVEEIYFQG 832 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 W +GLK R+ S + K++A +P Sbjct: 833 WKLGLKALAIYRNNCKVGQPLS--DAKEKKVSAAVEGSHEHRPVRRRLPK 880 >gi|237748699|ref|ZP_04579179.1| ribonucleotide reductase large subunit [Oxalobacter formigenes OXCC13] gi|229380061|gb|EEO30152.1| ribonucleotide reductase large subunit [Oxalobacter formigenes OXCC13] Length = 963 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 145/616 (23%), Positives = 260/616 (42%), Gaps = 73/616 (11%) Query: 316 MPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFL 373 + RVA LA E + +K+ E + F+ + +GT L +CF+ Sbjct: 40 SVEEVMERVAQALAEVEAPKNKKKYAEEFLWALQNGFIPAGRVSSAAGTGLQTTLINCFV 99 Query: 374 TTVPDDLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 V D + GI+ AL + A + GG+G +++ +R GA + GT + G I Sbjct: 100 QPVGDSITNMVDGKPGIYTALAQAAETMRRGGGVGYNFSSIRPRGAKVRGTGSSASGPIS 159 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++KV + + V G R+GA A L H D+ EF+ +++ ++ + + N + + Sbjct: 160 YMKVFDRSCETVESAGARRGAQMAVLNIDHPDIVEFITIKQ----EQNQLSNFNVSVGVT 215 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 D FM+ V + + L E ++ E + G+ V+ K+ A +W Sbjct: 216 DKFMQAVESDGDFELAHVAEPNN----------ELKEKGSYKRADGK-WVYSKVKARDIW 264 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 ++ + P + + D N + + V+ ++N C E L + C LGS+N Sbjct: 265 DLVMKSTYNAAEPGVLYIDRINRENNLAYCEVIEATNPCGEQPLP----DYGCCCLGSLN 320 Query: 607 LLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L + + FD++ A + AVR+LDNV+ +E+ K R IGLG Sbjct: 321 LTSFVTAPFSAHPLFDFNLFARVTKIAVRMLDNVLTATKWPLEEQAKEAAAKRRIGLGFT 380 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 G AL +L I Y S EA ++ E + + A S S++LA+ERGA+ + +G F Sbjct: 381 GLGDALIMLGIRYDSEEARILSSEISKAMRDAAYSGSIDLAKERGAFPMLDVENYLKGGF 440 Query: 722 PIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVS 779 +E+K +++ G+RNS+ +IAPT TI+ S Sbjct: 441 V--------------------SRLPEEMKAQIRKHGIRNSHLTSIAPTGTISLAFADNAS 480 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P++ Y + + + +++ E + G+ ++ ++PD Sbjct: 481 NGIEPAFSWFYNRVKR-----------MPDGSKKNYTVEDHAYRIYRSMGN--DVSKLPD 527 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898 +A EI + + + +ID A S + + E + +Y +AW GLK Sbjct: 528 ----YFVSALEISAIDHMLMVAAVAPYIDAAISKTVNVAEEYPYEDFKNLYMEAWKKGLK 583 Query: 899 TTYYLRSRSATSVEKS 914 R + + S Sbjct: 584 GITTYRPNNVRTAILS 599 >gi|193065976|ref|ZP_03047035.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|260845323|ref|YP_003223101.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|192926390|gb|EDV81025.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E22] gi|257760470|dbj|BAI31967.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O103:H2 str. 12009] gi|323159822|gb|EFZ45794.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E128010] Length = 714 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|50842509|ref|YP_055736.1| vitamin B12-dependent ribonucleotide reductase [Propionibacterium acnes KPA171202] gi|50840111|gb|AAT82778.1| ribonucleoside-diphosphate reductase alpha chain [Propionibacterium acnes KPA171202] gi|313764463|gb|EFS35827.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL013PA1] gi|313812950|gb|EFS50664.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL025PA1] gi|313816001|gb|EFS53715.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL059PA1] gi|313827770|gb|EFS65484.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL063PA2] gi|314915455|gb|EFS79286.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL005PA4] gi|314918261|gb|EFS82092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL050PA1] gi|314920074|gb|EFS83905.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL050PA3] gi|314931597|gb|EFS95428.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL067PA1] gi|314958164|gb|EFT02267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL002PA1] gi|314967825|gb|EFT11924.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL037PA1] gi|315098528|gb|EFT70504.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL059PA2] gi|315101114|gb|EFT73090.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL046PA1] gi|315105661|gb|EFT77637.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL030PA1] gi|327450790|gb|EGE97444.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL087PA3] gi|327453865|gb|EGF00520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL083PA2] gi|328754209|gb|EGF67825.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL087PA1] gi|328754540|gb|EGF68156.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL025PA2] Length = 950 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 134/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL N+ FD +K + + +D I E K+ R +G+G Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G Y + + Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ A+ ++ WD++ K T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835 I+P + + + K G +VN + LK + + + +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616 Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 617 DLDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYME 676 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S K + + A P +P S Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728 >gi|315108335|gb|EFT80311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Propionibacterium acnes HL030PA2] Length = 950 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 134/652 (20%), Positives = 240/652 (36%), Gaps = 67/652 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G + + + E LL +F ++P FN T Q+S+CF+ +V D + I Sbjct: 109 GYFASDDDAKVFGEELTWLLVHQYFSFNSPVWFNVGTTSPQQVSACFILSVDDSMESILN 168 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 169 WYREEGFIFKGGSGAGLNISRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 227 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + D R + + N + + Sbjct: 228 RAAKMVVLDIDHPDIEEFIETKAREEDKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 287 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q + L S E KV + A L Sbjct: 288 SDAFMAAVEQGKPFGLMSRTE--------------------------PDKVLDTVDAKEL 321 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 + K+ +E P + + D N + G +++SN C+E S + + CNL S+ Sbjct: 322 FGKIAQAAWECADPGLQYDDTINAWHTTPNSGRINASNPCSEYM----SLDNSSCNLASL 377 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL N+ FD +K + + +D I E K+ R +G+G Sbjct: 378 NLLKFLDENDHFDVEKFTRAVELVITAMDISICFADFPTEAIGKTTRNFRQLGIGYANLG 437 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L L + Y S +A ++ + S ELA G Y + + Sbjct: 438 ALLMALGLGYDSDGGRALAAAITSLMTGVSYRRSAELAAIVGPYGGYSENAEPHQAVMAR 497 Query: 725 SIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 + ++ A+ ++ WD++ K T G RN+ +APT TI + + Sbjct: 498 HRDANRQVHPLHNNDTAVLTAAKAEWDKVVKLGHTNGFRNAQASVLAPTGTIGFMMDCDT 557 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIE 835 I+P + + + K G +VN + LK + + + +GS+ Sbjct: 558 TGIEPDFSLVKFKKMVGGGSMQIVNQTVPRALKNLG-YTPEQAEKIVAYIADNGSVVGAP 616 Query: 836 RIPDDLKKIHATAFE---IDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + ++ A I PM + + Q ++ A S + L E + + + +Y + Sbjct: 617 DLDEAHYEVFDCAMGARFIAPMGHVRMMAAVQPFLSGAISKTVNLPESSTVENIAGVYME 676 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 W +GLK R S K + + A P +P S Sbjct: 677 GWKLGLKALAVYRDNCKVGQPLSEAKKKEEEEKAEPEVRIEYRPRRQRLPKS 728 >gi|92112512|ref|YP_572440.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Chromohalobacter salexigens DSM 3043] gi|91795602|gb|ABE57741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Chromohalobacter salexigens DSM 3043] Length = 723 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 169/746 (22%), Positives = 302/746 (40%), Gaps = 71/746 (9%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 +L + + +Y + A L + + ++ + + Sbjct: 4 TVELTEKTPAVEASRATQTLDYHALNAMLNLYDDQGRLQLDADREASRQYFLQHVNQNTV 63 Query: 255 YFCRYIEEGVK----ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF---- 306 +F E+ E + +D ++ + + F + + Y Sbjct: 64 FFHTLAEKLEYLVAENYYEQEVLDQYDFPFIKSLFERAYAVKFRFQSFLGAFKYYTSYTL 123 Query: 307 LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 +G R E + VA+ LA + E A + + + F +TPT N G + Sbjct: 124 KTFDGRRYLERFEDRVCMVALTLAQGD---EALARQLVDEIIHGRFQPATPTFLNCGKKQ 180 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 +L SCFL + D++ I ++ L+K GG+ + +R GA I +S G+ Sbjct: 181 RGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREAGAPIKHIENQSSGI 240 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 241 IPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVV 300 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISA 542 IPD+ + +N LFSP +V +++ Y A + K I+A Sbjct: 301 IPDITFELAKRNEPMYLFSPYDVENVYGKPFGDISVTEKYYEMVDDARIRKTK----INA 356 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 L++ + + FE+G+P++ F+D N +P G ++ SNLC+EI ++ + Sbjct: 357 RELFQTLAEVQFESGYPYVMFEDTVNRANPI--AGRINMSNLCSEILQVNTPSDYEADLG 414 Query: 603 -------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654 S NL + D +T+ TA+R L V ++ + ++ ++N Sbjct: 415 YERIGEDISCNLGSLNIAKTMDSSDFGATVETAIRGLTAVSEMSDIRSVPSIAEANKQSH 474 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 AIGLG M L HI Y S E ++ + +++HA+ AS LA ER A++ F+ Sbjct: 475 AIGLGQMNLHGYLAREHIHYGSEEGLDFTNLYFYTVTYHALRASNRLAIERGRAFAGFEA 534 Query: 714 SLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 S + GV+ + E+ D+ ++ ++ W ELK V G+ N N A Sbjct: 535 SDYASGVYFDKYTEQAWGPRTARVRELFDKAGIHVPTQEDWRELKASVMAHGLFNRNLQA 594 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT +I+ I + SI P + ++ G +L Sbjct: 595 VPPTGSISYINHSTSSIHPVVSKIEIRKEGKLGRVYYPAPYL------------------ 636 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 DD + + A+EI P +I++ + + +DQ SL L+ + + + Sbjct: 637 -------------NDDNQDYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTR 683 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSAT 909 ++ AW G+KT YY+R R A Sbjct: 684 DINRAQIYAWRKGIKTLYYVRLRQAA 709 >gi|332527721|ref|ZP_08403762.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rubrivivax benzoatilyticus JA2] gi|332112119|gb|EGJ12095.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rubrivivax benzoatilyticus JA2] Length = 827 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 148/637 (23%), Positives = 258/637 (40%), Gaps = 74/637 (11%) Query: 322 MRVAMGLALKETEKEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379 RVA LA E E + A E + F+ + + +GT L +CF+ V D Sbjct: 39 ARVARALAAIEAEDARSAREAEFLWAMQRGFVPAGRIMSAAGTDIQATLINCFVQPVGDS 98 Query: 380 LYG-------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + G I+ A+ E A + GG+G D++ +R GA + T+ ++ G + F++V + Sbjct: 99 ITGYEGDKPGIYTAVTEAAETMRRGGGVGYDFSRIRPQGALVTQTHSRASGPVSFMRVFD 158 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA L H D+E F+ + D+ + N + + D ++ Sbjct: 159 ASCETVESAGARRGAQMGVLRCDHPDIEAFIHAK-----DKGELRNFNISVGVTDALVQA 213 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V +A + L E RQ + G+ V+R + A LW +++ Sbjct: 214 VIDDAEFELVHAARPH----------EELVAAGARQREDGK-WVYRSVKARDLWDQIMRS 262 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF- 611 ++ P + F D N + + + ++N C E L + C LGS++L H Sbjct: 263 TYDHAEPGVLFIDQMNRENNLHYCETIEATNPCAEEPLP----DYGCCCLGSVDLTRHVV 318 Query: 612 ----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + FD++ A+ +R VR+LDNV+D +E+ + R +GLG +G S+L Sbjct: 319 GAFSDDAHFDFEGFAAVVRVGVRMLDNVLDATYWPLEQQRAEAAAKRRVGLGFLGLGSSL 378 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L I Y S E +A + E + + ASV+LA ERGA+ + + + Sbjct: 379 VMLGIRYDSDEGRALAAKIAETMRDASYLASVDLAVERGAFPKLEKTKY----------- 427 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPS 785 + ++ + ++K ++ G+RNS+ +AIAPT TI+ S I+P Sbjct: 428 ---------LKSGFAKRLPESIRKAIRKHGIRNSHLLAIAPTGTISLAFADNASNGIEPP 478 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + + R L H G G++ ++P Sbjct: 479 FSWTYNRKKR-----------EADGSHRIFEVADRAWRLFRHLG--GDVTKLPPQ----F 521 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 TA E+ + Q ++D + S + + + + +Y AW GLK R Sbjct: 522 VTALEMSANDHMRMLEAVQPFLDTSISKTVNVPADYPYEDFQNLYLDAWKAGLKGLATYR 581 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 S S D + T +G P Sbjct: 582 PNSVLGSVLSVGTPAAAPATPAAPRDEDPLTKHVGRP 618 >gi|300898655|ref|ZP_07116976.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] gi|300357683|gb|EFJ73553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 198-1] Length = 701 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|293394771|ref|ZP_06639062.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera DSM 4582] gi|291422722|gb|EFE95960.1| ribonucleotide-diphosphate reductase subunit alpha [Serratia odorifera DSM 4582] Length = 693 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 168/716 (23%), Positives = 293/716 (40%), Gaps = 85/716 (11%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + +EEG + Sbjct: 16 DRLAARHYFLQHVNQNTVFFHNLEEKLRY-------------LVEEGYYEPQVLAQYDFP 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + VA+ LA + + Sbjct: 63 FIKQLFKQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLAAGDRQ 122 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 A + + S F +TPT NSG R +L SCFL + D++ I A+ L Sbjct: 123 ---LAQDLVEEMISGRFQPATPTFLNSGKRQRGELVSCFLLRIEDNMESIGRAVNSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLN 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ + Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVERV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG F + + + + ++ + +I+A ++ + + FE+G+P++ F+D N Sbjct: 297 YGMPFSDISVSEKYREMVDDKRIRKSRINARDFFQVLAEIQFESGYPYMMFEDTVNR--E 354 Query: 573 QQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 G ++ SNLC+EI + + CNLGS+N+ D Sbjct: 355 NPIAGRINMSNLCSEILQVNRASKYHDDLGYAQVGKDISCNLGSLNIAKT-----MDAAD 409 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + TA+R L V ++ + ++ + N RAIGLG M L I Y SPE Sbjct: 410 FGKAVNTAIRALTAVAEMSDIRSVPSIAEGNRASRAIGLGQMNLHGYLARERIYYGSPEG 469 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV------ 732 ++ + +++HAI AS +LA ER A+ F+ S + G + + + Sbjct: 470 IDFTNIYFYTVAYHAIRASNQLAIERGNAFDGFEHSAYASGDYFAKYVDRQWQPQTERVR 529 Query: 733 --RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E + ++ W L++ V G+ N N A+ PT +I+ I + SI P + Sbjct: 530 QLFAEAGVEIPTQEQWLALRQSVMLHGLYNQNLQAVPPTGSISYINNSTSSIHPIVSRIE 589 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G ++ N+ + A+ Sbjct: 590 IRKEGKIGRVYYPAPYMTND-------------------------------NLDYYQDAY 618 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 619 QIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKTIYYIR 674 >gi|116253996|ref|YP_769834.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium leguminosarum bv. viciae 3841] gi|115258644|emb|CAK09748.1| putative ribonucleoside-diphosphate reductase alpha subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 707 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 180/708 (25%), Positives = 291/708 (41%), Gaps = 66/708 (9%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R L+K R + + T L + E + +L + +F Sbjct: 23 GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYCEQEVLDQYSFNFVRDL 81 Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337 Y + F F +LG Y Y L +G R E + VA+ LA + + Sbjct: 82 FDQA--YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGDEALAR 139 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 VE + S F +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 140 DMVE---EIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 196 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL H Sbjct: 197 GGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 256 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ +YG Sbjct: 257 PDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVERVYGV 313 Query: 517 EFEIAYENYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 F + + + ++ +KI A ++ + + FE+G+P+I F+D N +P Sbjct: 314 PFTEISVTEKYREMADDARISKKKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI-- 371 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTA 628 G + SNLC+EI S + E S NL + D TI T+ Sbjct: 372 AGRISMSNLCSEILQVSEASEYHDDLSYKHLGKDISCNLGSLNIAAAMDSADFGKTIETS 431 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D+ + ++ +K N AIGLG M L I Y S E V+ + Sbjct: 432 IRALTAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDFTNIYF 491 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAM 738 +++HAI AS LA ERG + F+ S + G + L E + + Sbjct: 492 YTVTYHAIRASNLLAVERGTSFKGFENSKYASGEYFDKYTDRLWEPATEKVKALFETADI 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797 + ++ W LKK V G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 552 HIPTQEDWAALKKLVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIG 611 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 F+ N+ + A+EI P +I Sbjct: 612 RVYYPAPFMTND-------------------------------NLDYYQDAYEIGPEKII 640 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 641 DTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKTIYYIR 688 >gi|309795134|ref|ZP_07689553.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] gi|308121105|gb|EFO58367.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 145-7] Length = 701 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|300916823|ref|ZP_07133527.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] gi|300415889|gb|EFJ99199.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 115-1] Length = 701 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI + + E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|257056733|ref|YP_003134565.1| vitamin B12-dependent ribonucleotide reductase [Saccharomonospora viridis DSM 43017] gi|256586605|gb|ACU97738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Saccharomonospora viridis DSM 43017] Length = 955 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 131/650 (20%), Positives = 231/650 (35%), Gaps = 66/650 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E E +L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 116 GYFAGAADAEIFEHELTWMLLHQVFSFNSPVWFNVGTSSKQQVSACFILSVDDTMESILN 175 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 176 WYKEEGLIFKGGSGAGLNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H DVEEF++ + R + + N + + Sbjct: 235 RAAKMVVLDVDHPDVEEFIETKAREEHKIRALRDAGFDMDLGGADISSVQYQNANNSVRV 294 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V + L + R ++ ++ A +L Sbjct: 295 SDEFMQAVETGGDFGLRA---------------------------RTTGEIIERVDARSL 327 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +RKM +E P I + D N G + +SN C+E + + CNL S+ Sbjct: 328 FRKMAQAAWECADPGIQYDDTINDWHTCPESGRITASNPCSEYMH----LDNSSCNLASL 383 Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NLL ++ FD + + + +D I E ++ R +G+G Sbjct: 384 NLLKFLRDDGTFDAELFVKAVELVITAMDISICFADFPTEAIAETTRKFRQLGIGYANLG 443 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L Y S +A ++ + S ELA G Y + + Sbjct: 444 ALLMATGHAYDSEGGRALAAAITSLMTAVSYRRSAELAGIVGPYEGYARNAEAHQRVMRK 503 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC----MAIAPTATIANICGV-S 779 VR + R + R +GM N +APT TI + + Sbjct: 504 HAAANELVRTYHVNDAAIRAVATKEWNRGIELGMANGWRNSQASVLAPTGTIGFMMDCDT 563 Query: 780 QSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIER 836 I+P + + + K G +VN+ + L+ +E + I D G + N Sbjct: 564 TGIEPDFSLVKFKKLVGGGSMKIVNNAVPRALRSLGYQEEQIEAIVDYISEHGHVVNAPG 623 Query: 837 IPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + + ++ A I PM + + Q ++ A S + + E + + ++ IY Q Sbjct: 624 LRPEHYEVFDCAVGERSIAPMGHVRMMAAVQPFLSGAISKTVNMPESATVEDVEEIYFQG 683 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 W +GLK R ST K + A P +P Sbjct: 684 WKLGLKALAIYRDNCKVGQPLSTAKKEKSESRAEPEKVVEYRPVRKRLPK 733 >gi|256059455|ref|ZP_05449657.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella neotomae 5K33] Length = 738 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + + DG L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + RV M Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRANPI--DGRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S E V+ + +++HA+ AS +A E ++ F+ S + G + D A Sbjct: 510 GSEEGVDFTNIYFYTVAYHAMRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568 Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628 Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + ++ G +F+ N+ + Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY Sbjct: 658 YYLDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LR 904 +R Sbjct: 718 IR 719 >gi|300024266|ref|YP_003756877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomicrobium denitrificans ATCC 51888] gi|299526087|gb|ADJ24556.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomicrobium denitrificans ATCC 51888] Length = 809 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 160/642 (24%), Positives = 259/642 (40%), Gaps = 87/642 (13%) Query: 318 QAFFMRVAMGLALKET----EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + F RVA+ A E +++K A FY ++ F F + L +GT L +CF Sbjct: 35 EDTFRRVALAAASAEKGGKRQQQKWAGTFYEAMADFGFQPAGRILAGAGTDRNVTLFNCF 94 Query: 373 LT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + + DDL IF +++E A+ + GG+G+D++ +R GA + + G + F+ V Sbjct: 95 VLGEIADDLSSIFESVKEAALTMQSGGGIGHDFSTLRPRGAPVKSIGADASGPVSFMDVW 154 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + + G+R+GA+ A L H D+E F+ + D +R + N + + D FM Sbjct: 155 DAMCRTIMSAGQRRGAMMATLRCDHPDIEAFIAAKA----DSQRLRNFNLSVLVTDAFMD 210 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 V ++A W L KV++ I A ALW +++ Sbjct: 211 AVRRDAPWDLIFS-----------------------------GKVYKTIPARALWDQIMR 241 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 F+ P + F D N + Q+ + ++N C E L C LGSINL Sbjct: 242 ATFDYAEPGVIFIDRINAANNLQYCETISATNPCGEQPLPPY----GACLLGSINLARLV 297 Query: 612 ANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 D KL + + TAVR LDNVIDI+ + + + + R IGLG+ G A Sbjct: 298 EEPFTATAHVDIAKLEARVATAVRFLDNVIDISRYPVPQQAQEARAKRRIGLGVTGLADA 357 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L L +PY S A E A M I A AS LA E+GA+ Sbjct: 358 LIFLGLPYGSAAAREQAARWMAIIQNAAYRASAALAAEKGAFP----------------- 400 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785 L + L +RL D +++ + G+RN +IAPT TI+ + G S I+P Sbjct: 401 --LYDANVVLTRPNITRLDDD-VREAIAANGLRNGCLTSIAPTGTISLLAGNVSSGIEPV 457 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + ++ + L +E + D + + + L + Sbjct: 458 FDFVFRRRV---------------LSDGGGAEEETVEDFAHR--AFRDAFGDDAVLPEAF 500 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 TA + P + + Q ++D A S + + S + IY +A+ GLK R Sbjct: 501 VTAETLTPSEHVAMQATLQPYVDSAISKTINCPEDISFESFRDIYIEAYDSGLKGCTTYR 560 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 + T S +G + +S G+ Sbjct: 561 PNAITGSVLSREAPANGDADKSGKLATPASGKPAGVSVPMED 602 >gi|238852994|ref|ZP_04643392.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus gasseri 202-4] gi|238834389|gb|EEQ26628.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus gasseri 202-4] Length = 722 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 177/750 (23%), Positives = 310/750 (41%), Gaps = 79/750 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ T + E NY +E + + + L E Sbjct: 8 DSYISLNALTKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFVSL-EEKLA 58 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIE 315 ++ + + + + + + ++G Y Y L N + +E Sbjct: 59 YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQVLE 118 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLT 374 + R M E+ A+ + S F +TPT N+ R + SC+L Sbjct: 119 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGRKRRGEYVSCYLL 175 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 176 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 235 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 236 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 295 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q + + ISA ++ + + Sbjct: 296 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNILNNPCIKKTFISARKFFQTIAEVQ 352 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 353 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCN 412 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL + +++ L+ V + +K N +RAIGLG Sbjct: 413 LGSLNIAAAMNSA----DKLGDLVSDSIQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 468 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA+ GA+ FK S + G Sbjct: 469 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGD 528 Query: 721 FPIDSIGLL--------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 529 YFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 588 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + V ++ Sbjct: 589 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 621 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 +I D + + A+E+ P +I+ + QK++DQ+ SL L++++ + + L+ Y Sbjct: 622 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 678 Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 A+ + YY+R R E T Sbjct: 679 YAFKKRCNSIYYVRIREKVLAGSENLTADE 708 >gi|297249810|ref|ZP_06933511.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus bv. 5 str. B3196] gi|297173679|gb|EFH33043.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus bv. 5 str. B3196] Length = 722 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 175/716 (24%), Positives = 288/716 (40%), Gaps = 91/716 (12%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + + + +K + + Y + +L + +F Sbjct: 48 AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 95 Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336 Y R F F +LG Y Y L +G R E + VA+ LA + E Sbjct: 96 LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLARGD---E 150 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + + S + +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 151 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 210 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL Sbjct: 211 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 270 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 271 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 330 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 Y A + +KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 331 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 386 Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 G + SNLC E + CNLGS+N+ A D Sbjct: 387 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 439 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TI T++R L V D+ + + + N AIGLG M L I Y S E V Sbjct: 440 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 499 Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + +++HA+ AS +A E ++ F+ S + G + D A + Sbjct: 500 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 558 Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R ++ W LKK V G+ N N A+ PT +I+ I + SI P + Sbjct: 559 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 618 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G +F+ N+ + + A+ Sbjct: 619 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 647 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 648 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 703 >gi|317482332|ref|ZP_07941352.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|316916212|gb|EFV37614.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] Length = 731 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 163/739 (22%), Positives = 281/739 (38%), Gaps = 78/739 (10%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLE------KLRRE-VLTTVYKKPQKATHHEMQCLYPEY 255 ++ + +Y + A L + ++ Y AT+ + E Sbjct: 15 ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVATNIKRFASTAER 74 Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 I + L ++ +LG Y Y L R+ Sbjct: 75 LDYLISNQYYNPDVFAQYSAEFLDRFYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + F R A E +A E+ + + + F +TPT N G + SCFL Sbjct: 135 L-EDFPQRCAAVALELAAGNEAQATEYVDEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I + L+K GG+ + +R LGA I +S GVIP +K+ D+ Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPIMKLLEDS 253 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R + IPD+ + Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 Q A LFSP D+ +YGK F + ++ + I A + + + Sbjct: 314 QKAQMALFSP---YDVERVYGKPFADISVTEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370 Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 FE+G+P+I F+D N +P + V + E + CNLG Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ LA T+ TA+R L +V + + + + +++N AIGLG M Sbjct: 431 SLNIAKTMDG------GLAHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y S E ++ D +++HA AS LA E ++SF S + + Sbjct: 485 LHGFLAREGIQYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGRTFASFATSDYAKPAG 544 Query: 722 PIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + R L + W+ L+ + G+ N N A+ Sbjct: 545 QGNYFDKYTDGRRSLTPRTERVRALFEQYGIAIPTAADWEALRDAILKDGIYNQNLQAVP 604 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +++ N+ Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + G + A+EI ++++ + + +DQ SL L+ + + + L Sbjct: 648 NLG--------------YYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712 >gi|227537624|ref|ZP_03967673.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|227242510|gb|EEI92525.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] Length = 701 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 171/706 (24%), Positives = 304/706 (43%), Gaps = 54/706 (7%) Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L ++ + + + + Y+ E +E + + N + Sbjct: 25 YSLHKDKEAVRAYFLEYVNKNTVFFYTLKEKIDYLIEQNYYINFYEWFTFEQMEEVFNFV 84 Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ ++ + Y L + +E + + VA+ LA +E +A+E+ Sbjct: 85 YAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVVAVALFLAREEG--VAKAIEYA 142 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + + +TPT N+G + +L SCFL + D+L GI A+ L+ GG+ Sbjct: 143 EIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSIGGGVSF 202 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I G G++ GV+P +K+ DT NQ G+R GA YL +H D+EEF Sbjct: 203 NISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLGQRPGAGAVYLNIFHSDIEEF 262 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K D++ R ++ +PD FM+ ++ L P V + Y E + Sbjct: 263 LDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLIYPHTVMQEYGQYLDELD-MD 321 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE IK +KI+A L K+ E+G+P+I FK+ N +G V S Sbjct: 322 LMYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIFFKENANREHALNGLGKVKFS 380 Query: 583 NLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 NLCTEI N +E + S NL + D ++ T++TA+R L V Sbjct: 381 NLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNVATVMDNKRIKETVKTAMRALTVV 440 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D+ + + K+N ++GLG M L I Y S EA++ A+ +++++ Sbjct: 441 SDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAKSFIMYESDEALDFANTFFMMMNYYS 500 Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWD 747 + AS+E+A+E + + + S + G + D + +V++ M+ + W Sbjct: 501 LEASMEIAKERQRTFVGCEKSAYADGTYFDKYLSRDYMPKSDKVKELFEGMHIPTIEDWA 560 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +LK++VK G+ ++ +AIAP + + I + S+ P + V+ +L Sbjct: 561 QLKEQVKEHGVYHAYRLAIAPNQSTSYIMNATASVMPIVDIIEVREYGDSTTYYPMPYLT 620 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ +A+++D M ++ S Q+ I Sbjct: 621 ND-------------------------------NYFYFKSAYDMDQMKVLRLISVIQRHI 649 Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 DQ S L+ + S + L Y A +GLK+ YY R+R +T E Sbjct: 650 DQGVSTILHTNSKDSTRDLAKYYIYAHKLGLKSLYYTRTRKSTIDE 695 >gi|15842617|ref|NP_337654.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis CDC1551] gi|148824242|ref|YP_001288996.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis F11] gi|253797851|ref|YP_003030852.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 1435] gi|289553158|ref|ZP_06442368.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 605] gi|308374764|ref|ZP_07437295.2| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu006] gi|308379399|ref|ZP_07486134.2| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu010] gi|308406043|ref|ZP_07494896.2| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu012] gi|61230675|sp|P0A5W8|RIR1_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase R1 subunit gi|61230680|sp|P0A5W9|RIR1_MYCBO RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase R1 subunit gi|13882932|gb|AAK47468.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycobacterium tuberculosis CDC1551] gi|148722769|gb|ABR07394.1| ribonucleoside-diphosphate reductase alpha subunit nrdE [Mycobacterium tuberculosis F11] gi|253319354|gb|ACT23957.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 1435] gi|289437790|gb|EFD20283.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 605] gi|308340742|gb|EFP29593.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu006] gi|308357116|gb|EFP45967.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu010] gi|308364704|gb|EFP53555.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu012] gi|323718283|gb|EGB27461.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis CDC1551A] gi|328457628|gb|AEB03051.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis KZN 4207] Length = 725 Score = 312 bits (799), Expect = 2e-82, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 280/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 71 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 687 VNKAQIYAWRKGIKTLYYIR 706 >gi|261323426|ref|ZP_05962623.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella neotomae 5K33] gi|261299406|gb|EEY02903.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella neotomae 5K33] Length = 713 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + + + +K + + Y + +L + +F Sbjct: 39 AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86 Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336 Y R F F +LG Y Y L +G R E + RV M E Sbjct: 87 LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + + S + +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 Y A + +KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377 Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 G + SNLC E + CNLGS+N+ A D Sbjct: 378 --DGRITMSNLCLEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TI T++R L V D+ + + + N AIGLG M L I Y S E V Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490 Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + +++HA+ AS +A E ++ F+ S + G + D A + Sbjct: 491 DFTNIYFYTVAYHAMRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549 Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R ++ W LKK V G+ N N A+ PT +I+ I + SI P + Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G +F+ N+ + + A+ Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYLDAY 638 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694 >gi|191167117|ref|ZP_03028938.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] gi|190902899|gb|EDV62627.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B7A] Length = 714 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|118617479|ref|YP_905811.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium ulcerans Agy99] gi|118569589|gb|ABL04340.1| ribonucleoside-diphosphate reductase (alpha chain) NrdE [Mycobacterium ulcerans Agy99] Length = 693 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 170/716 (23%), Positives = 290/716 (40%), Gaps = 85/716 (11%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + AR + + + + +K + I E R + + Sbjct: 16 DVLAARQFFLQHVNQNTVFFHNQDEKLDY-------------LIRENYYEREVLDQYSRN 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L + ++ +LG Y Y L +G R E + + VA+ LA + Sbjct: 63 FVKALLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLASGDAT 122 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 A + + + F +TPT NSG + + SCFL + D++ I ++ L Sbjct: 123 ---LAEKLVDEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ T +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 180 SKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLH 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ + Sbjct: 240 AHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG F + + ++ + I A ++ + + FE+G+P+I F+D N +P Sbjct: 297 YGVPFADISVTEKYYEMVDDSRIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNRANP 356 Query: 573 QQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDK 620 G + SNLC+EI + + CNLGS+N+ D Sbjct: 357 I--EGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIART-----MDSPD 409 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 A TI A+R L V D + ++ ++ N+ AIGLG M L HI Y S E Sbjct: 410 FAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREHIFYGSEEG 469 Query: 680 VEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR----- 733 V+ + + +HA+ AS +A ERG + F S + G F + E + Sbjct: 470 VDFTNIYFYAVLYHALRASNRIAVERGTRFKGFDQSKYASGEFFDKYTERVWEPKTEKVR 529 Query: 734 ---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + + ++ W LK+ V+ G+ N N A+ PT +I+ I + SI P + Sbjct: 530 QLFADAGIRIPNQDDWQRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVE 589 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G ++ N + + A+ Sbjct: 590 IRKEGKIGRVYYPAPYMTN-------------------------------ENLDYYQDAY 618 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 619 EIGYEKIIDTYAAATEHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674 >gi|218706175|ref|YP_002413694.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UMN026] gi|218433272|emb|CAR14172.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli UMN026] Length = 714 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|227888209|ref|ZP_04006014.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|300986154|ref|ZP_07177744.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|301050517|ref|ZP_07197393.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|227834849|gb|EEJ45315.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 83972] gi|300297773|gb|EFJ54158.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 185-1] gi|300407908|gb|EFJ91446.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 45-1] gi|307554651|gb|ADN47426.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli ABU 83972] gi|315290986|gb|EFU50351.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 153-1] Length = 701 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 176/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|293412033|ref|ZP_06654756.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|291468804|gb|EFF11295.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] Length = 714 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 175/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFITTHVRPNSVAFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYAELVANERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|296159883|ref|ZP_06842704.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. Ch1-1] gi|295889866|gb|EFG69663.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. Ch1-1] Length = 858 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 149/632 (23%), Positives = 263/632 (41%), Gaps = 80/632 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 L +L ++Y + F RVA G+A E + +VE F + L Sbjct: 26 QFSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPPALRESVEALFVDNLRHGALG 81 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 82 AGRIMSAAGTGIAATLINCFVQPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNF 141 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA +H T+ + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 142 SAIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 201 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM+ V ++ W L E S + Sbjct: 202 AKHSKG----RWNNFNVSVGVTDDFMRAVEEDQPWQLVHRAEPSPA---------QRAAD 248 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 RQ + G + V+ + A A+W +++ ++ P I F N + + V + ++N Sbjct: 249 DVRQREDG-LWVYSERPARAIWDRIMRSTYDIAEPGIVFISRMNEDNNLRAVETIRATNP 307 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL FD+D LA RT VR LDNV Sbjct: 308 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNV 363 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + + R IG+G G L +L + Y S E + A + + A Sbjct: 364 LDVTLWPLPQQYEESRAKRRIGVGFTGLGDTLVMLGLRYDSQEGRDFAVGIAQLMRDEAY 423 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA+ F + + L + +++K+ ++ Sbjct: 424 RASVELARERGAFPLFDAARY-------------------LETGTFASRLPEDIKQAIRR 464 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y + ++ + + Sbjct: 465 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGSRE 513 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 E L G G+++R+PD +A E+ ++ + Q ++D + S Sbjct: 514 SFDVEDYAYRLYRELG--GDVDRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISK 567 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + + +Y AW GLK R Sbjct: 568 TVNVPADYPFEAFESLYFDAWKNGLKGLATYR 599 >gi|190893562|ref|YP_001980104.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium etli CIAT 652] gi|190698841|gb|ACE92926.1| ribonucleoside-diphosphate reductase protein, alpha subunit [Rhizobium etli CIAT 652] Length = 693 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 184/713 (25%), Positives = 297/713 (41%), Gaps = 76/713 (10%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R L+K R + + T L + E + +L + +F Sbjct: 9 GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDL 67 Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337 Y R F F +LG Y Y L +G R E + VA+ LA + E Sbjct: 68 FDQA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLARGD---EA 122 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 A + + + S F +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 123 LARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 182 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL H Sbjct: 183 GGGVALSLTNIREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 242 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ +YG Sbjct: 243 PDIMRFLDTKRENVDEKIRIKTLSLGVVVPDITFELAKNNEDMYLFSP---YDVERVYGV 299 Query: 517 EFEIAYENYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 F + + G+ ++ +KI A ++ + + FE+G+P+I F+D N +P Sbjct: 300 PFTEISVTEKYREMVGDARISKKKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI-- 357 Query: 576 VGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLAS 623 G + SNLC+EI S + E CNLGS+N+ A D Sbjct: 358 DGRISMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAA-----MDSADFGK 412 Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI T++R L V D+ + ++ +K N AIGLG M L I Y S E V+ Sbjct: 413 TIETSIRALTAVSDMSHIASVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDF 472 Query: 683 ADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------R 733 + +++HAI AS LA ERG + F+ S + G + + Sbjct: 473 TNIYFYTVTYHAIRASNLLAVERGTSFKGFENSKYACGDYFDKYTEQEWKPATEKVQALF 532 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 D+ ++ ++ W ELK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 533 DKSGIHIPTQDDWAELKTAVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK 592 Query: 794 NMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G F+ N+ + A+EI Sbjct: 593 EGKIGRVYYPAPFMTND-------------------------------NLDYYQDAYEIG 621 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 622 AEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674 >gi|260869354|ref|YP_003235756.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O111:H- str. 11128] gi|257765710|dbj|BAI37205.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O111:H- str. 11128] gi|323180096|gb|EFZ65648.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1180] Length = 714 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L+SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELASCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|17989275|ref|NP_541908.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. 16M] gi|189023016|ref|YP_001932757.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus S19] gi|237817304|ref|ZP_04596296.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus str. 2308 A] gi|254691264|ref|ZP_05154518.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 6 str. 870] gi|254695434|ref|ZP_05157262.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|254699052|ref|ZP_05160880.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|254702721|ref|ZP_05164549.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 3 str. 686] gi|254706145|ref|ZP_05167973.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M163/99/10] gi|254711556|ref|ZP_05173367.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis B2/94] gi|254712153|ref|ZP_05173964.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M644/93/1] gi|254715224|ref|ZP_05177035.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M13/05/1] gi|254732498|ref|ZP_05191076.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 4 str. 292] gi|256029808|ref|ZP_05443422.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M292/94/1] gi|256043235|ref|ZP_05446172.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|256111773|ref|ZP_05452744.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|256256450|ref|ZP_05461986.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 9 str. C68] gi|256262716|ref|ZP_05465248.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 2 str. 63/9] gi|260544999|ref|ZP_05820820.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella abortus NCTC 8038] gi|260564447|ref|ZP_05834932.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 1 str. 16M] gi|260568372|ref|ZP_05838841.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis bv. 4 str. 40] gi|17985138|gb|AAL54172.1| ribonucleoside-diphosphate reductase alpha chain [Brucella melitensis bv. 1 str. 16M] gi|189021590|gb|ACD74311.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella abortus S19] gi|237788117|gb|EEP62333.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus str. 2308 A] gi|260098270|gb|EEW82144.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella abortus NCTC 8038] gi|260152090|gb|EEW87183.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 1 str. 16M] gi|260155037|gb|EEW90118.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella suis bv. 4 str. 40] gi|263092504|gb|EEZ16757.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella melitensis bv. 2 str. 63/9] gi|326410494|gb|ADZ67558.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis M28] gi|326553786|gb|ADZ88425.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis M5-90] Length = 738 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + + DG L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + RV M Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S E V+ + +++HA+ AS +A E ++ F+ S + G + D A Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568 Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628 Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + ++ G +F+ N+ + Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LR 904 +R Sbjct: 718 IR 719 >gi|254699598|ref|ZP_05161426.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 5 str. 513] Length = 738 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + + DG L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + RV M Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S E V+ + +++HA+ AS +A E ++ F+ S + G + D A Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568 Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628 Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + ++ G +F+ N+ + Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMAND-------------------------------NLE 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LR 904 +R Sbjct: 718 IR 719 >gi|293406172|ref|ZP_06650098.1| ribonucleotide reductase [Escherichia coli FVEC1412] gi|298381909|ref|ZP_06991506.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] gi|291426178|gb|EFE99210.1| ribonucleotide reductase [Escherichia coli FVEC1412] gi|298277049|gb|EFI18565.1| ribonucleoside-diphosphate reductase subunit alpha [Escherichia coli FVEC1302] Length = 706 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 176/734 (23%), Positives = 299/734 (40%), Gaps = 69/734 (9%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 +++ ++ + + L + R +K R+ + + Sbjct: 1 MTQETMDYHALNAMLNLYDS-------AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ- 51 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 + + EG + ++ L +LG Y Y L +G Sbjct: 52 QQRLNWLVNEGYYDENVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDG 111 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R + F RV M E A + + + S F +TPT N G + +L S Sbjct: 112 KRY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVS 169 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 170 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKM 229 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 230 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 289 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKM 549 +NA LFSP D+ +YGK F +IA + + E + ++A ++++ Sbjct: 290 HLAKENAQMALFSP---YDVERVYGKPFADIAISEHYAELVANERIRKKYLNARDFFQRL 346 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NL 602 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + Sbjct: 347 AEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHD 404 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 S NL + + D A T+ TAVR L V D+ + ++ + N AIGLG M Sbjct: 405 ISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQM 464 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G Sbjct: 465 NLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGE 524 Query: 721 FPIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + EL +R W +L+ V G+ N N A+ PT +I Sbjct: 525 YFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSI 584 Query: 773 ANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ +G F+ N Sbjct: 585 SYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN----------------------- 621 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 622 --------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQI 673 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 674 YAWRKGIKTLYYIR 687 >gi|21224150|ref|NP_629929.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces coelicolor A3(2)] gi|81816916|sp|O69981|NRDJ_STRCO RecName: Full=Vitamin B12-dependent ribonucleotide reductase; AltName: Full=Ribonucleoside-diphosphate reductase nrdJ gi|2995313|emb|CAA18341.1| ribonucleotide reductase [Streptomyces coelicolor A3(2)] gi|68449794|emb|CAJ01782.1| vitamin B12-dependent ribonucleotide reductase (class II) [Streptomyces coelicolor A3(2)] Length = 967 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 121/632 (19%), Positives = 226/632 (35%), Gaps = 32/632 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E+F+ + + R D + + V ++ Sbjct: 243 VDHPDIEDFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVQ 302 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G +F R +V ++ A AL+RKM + P I + D N Sbjct: 303 DGGKF--------GLTSRMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTINAWHTC 354 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ N FD ++ + + Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFDAERFSKVVELV 410 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ + S ELA G Y + + A+ ++ + Sbjct: 471 LMTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWAAATE 530 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RNS IAPT TI + ++P + + K G +V Sbjct: 531 AWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + +G++ + + + ++ A I M + Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKPEHYEVFDCAMGERSISAMGHV 650 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + L E + + ++ +Y +AW MG+K R S Sbjct: 651 RMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 710 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 +T+ + + Sbjct: 711 TKTVKDTEKAEITEKTEAAIRETVEKVVEYRP 742 >gi|326381480|ref|ZP_08203174.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia neofelifaecis NRRL B-59395] gi|326199727|gb|EGD56907.1| ribonucleotide-diphosphate reductase subunit alpha [Gordonia neofelifaecis NRRL B-59395] Length = 705 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 173/723 (23%), Positives = 283/723 (39%), Gaps = 87/723 (12%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + AR + + + +K + I+E + Sbjct: 16 DREAARQYFLQHVNQNTVFFHDLDEKLDY-------------LIKENYYEPEVLAKYDRE 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + RV M Sbjct: 63 FVKLLFGHAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALTLADG 119 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 A + + F +TPT NSG + + SCFL + D++ I ++ L Sbjct: 120 DTALARHLVDEIMDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + VR GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 180 SKRGGGVALLLSNVREHGAPIKRIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLH 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ + Sbjct: 240 AHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNDDMYLFSP---YDVERV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YGK F + E A + ++ + KI A ++ + + FE+G+P+I F+D N Sbjct: 297 YGKPFADVNVSDEYHAMVEDRRIRKSKIKAREFFQTLAELQFESGYPYIMFEDTVNR--S 354 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTI 625 G V SNLC+EI S+ E S NL + D +I Sbjct: 355 NPIDGKVTHSNLCSEILQVSTPSEFNEDLTYSQVGKDISCNLGSMNIAKTMDSPDFGQSI 414 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V D + ++ K++N AIGLG M L I Y S E ++ + Sbjct: 415 ETAIRGLTAVADQTSIESVPSIKRANDEGHAIGLGQMNLHGYLARERIFYGSEEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEV----------- 732 + FHAI AS ++A+ER ++ F+ S + G F + E Sbjct: 475 MYFYTVLFHAIRASNKIAKERGTTFAGFEKSKYASGEFFDKYTDQVWEPATEKVREIFAN 534 Query: 733 ---------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + ++ ++ W ELK V+ G+ N N A+ PT +I+ I + SI Sbjct: 535 AGPGESGQLFSDNGIHIPTQDDWRELKASVQKYGIYNQNLQAVPPTGSISYINHSTSSIH 594 Query: 784 PSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + ++ G +L N+ Sbjct: 595 PVASKIEIRKEGKIGRVYYPAPYLTND-------------------------------NL 623 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTY 901 + + A+EI +I++ + + +DQ SL L+ + S + ++ AW G+KT Y Sbjct: 624 EYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTASTRDVNKAQIYAWRKGIKTLY 683 Query: 902 YLR 904 Y+R Sbjct: 684 YIR 686 >gi|255324327|ref|ZP_05365448.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] gi|255298657|gb|EET77953.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] Length = 720 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 166/690 (24%), Positives = 291/690 (42%), Gaps = 67/690 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301 H +Y I+ + + +++ +D ++ K + F + Sbjct: 51 LQHVNQNTVYFHDLEEKIDYLINNKYYDPQVIEQYDFSFIKELFKRAYSYKFRFKSFLGA 110 Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y +G R E + RV+M A + + + F +TP Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDAGLAEHLVDEIMTGRFQPATP 167 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G +L SCFL + D++ I ++ L+K GG+ + +R GA I Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIRESGAPIK 227 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 228 HIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIMNFLDTKRENADEKIR 287 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533 ++ +PD+ + +N LFSP D+ +YGK F E+YE + Sbjct: 288 IKTLSLGIVVPDITFELAKRNDDMYLFSP---YDVERVYGKAFGDISVTEHYEEMVEDPR 344 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 I+ +KI+A ++ + + FE+G+P+I F+D N +P + ++ SNLC+EI +S Sbjct: 345 IRK-KKINARHFFQTVAELQFESGYPYIMFEDTVNRANPVKTSW-INMSNLCSEILQVNS 402 Query: 594 SEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 + E S NL + D A+T+ TA+R L V D + ++ Sbjct: 403 ASEFNADLTYEELGSDISCNLGSLNIAMTMDSPDFANTVETAIRGLTAVADKTSIDSVPS 462 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ N AIGLG M L HI Y S E ++ + + + A+ AS ++A+ER Sbjct: 463 VRRGNDESHAIGLGQMNLHGYLGREHIEYGSEEGLDFTNAYFAAVLYAALRASNKIARER 522 Query: 706 GAY-SSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 G Y + S + G F + E+ D +++ S W++LK+ V Sbjct: 523 GEYFTELPQSEYASGEFFDRYDPEEFKPKTKKVQELFDASSIHTPSAQDWEDLKQDVAKY 582 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815 G+ N N A+ PT +I+ I + SI P + ++ G + N+ Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + ++EI ++++ + K++DQ SL L Sbjct: 637 -------------------------NLEYFKDSYEIGYEKIVDTYAVATKYVDQGLSLTL 671 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + ++++ AW G+KT YY+R Sbjct: 672 FFKDTATTREVNRAQIYAWRKGIKTLYYIR 701 >gi|270265354|ref|ZP_06193615.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] gi|270040758|gb|EFA13861.1| ribonucleoside-diphosphate reductase subunit alpha [Serratia odorifera 4Rx13] Length = 693 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 165/711 (23%), Positives = 290/711 (40%), Gaps = 75/711 (10%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + +EEG + + Sbjct: 16 DRLAARHYFLQHVNQNTVFFHNLEEKLRY-------------LVEEGYYEQAVLAQYDFS 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + VA+ LA + Sbjct: 63 CIKQLFQQAYAKKFRFETFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAGD-- 120 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 + A + + S F +TPT N G + +L SCFL + D++ I A+ L Sbjct: 121 -TRLAQDLVEEMISGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ T +R +GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 180 SKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLN 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ + Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVEQV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG F + + + + ++ + +I+A ++ + + FE+G+P++ F+D N Sbjct: 297 YGVPFSEISVSEKYREMVDDKRIRKSRINAREFFQVLAEIQFESGYPYMMFEDTVNR--E 354 Query: 573 QQHVGVVHSSNLCTEITLN----SSSEETAVCNLG---SINLLAHFANNQFDYDKLASTI 625 G ++ SNLC+EI + ++ + +G S NL + D + Sbjct: 355 NPIAGRINMSNLCSEILQVNRASTYHDDLSYDRVGKDISCNLGSLNIAKTMDAPDFGKAV 414 Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V D+ + ++ + N + AIGLG M L I Y S E ++ + Sbjct: 415 DTAIRALTAVADMSDIRSVPSIAEGNRSSHAIGLGQMNLHGYLARERIFYGSEEGIDFTN 474 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735 +++HAI AS LA ER A+ F+ S + G + R + Sbjct: 475 IYFYTVAYHAIRASNRLAIERGSAFEGFEHSTYASGDYFTKYTEREWLPRTERVRTLFAD 534 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + R W L++ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 535 ANIAIPGREEWLALRQSVMMHGLYNQNLQAVPPTGSISYINNSTSSIHPIVSRIEIRKEG 594 Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ N+ + + A++I P Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYDIGPE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 624 KIIDTYAAAGQHVDQGLSLTLFFRDTATTRDINRAQIYAWRQGIKTIYYIR 674 >gi|323173042|gb|EFZ58673.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli LT-68] Length = 714 Score = 312 bits (798), Expect = 3e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|293389920|ref|ZP_06634254.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950454|gb|EFE00573.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter actinomycetemcomitans D7S-1] Length = 561 Score = 312 bits (798), Expect = 3e-82, Method: Composition-based stats. Identities = 159/587 (27%), Positives = 249/587 (42%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ ++ S+P N G SCF + + D + I + E +++K Sbjct: 57 EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G++I NGKS G F K+ T ++QG RKG Y++ Sbjct: 117 LGGGTSGYFGDIRPRGSNI-TNNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+LD+ + M + +++ + + Sbjct: 176 HGDIEEWLDIHT----EGNPIQLMYYGVCVSHEWLEAMKAGDPYK--------------- 216 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +W K+L ETG P++ FKD N P + Sbjct: 217 ---------------------------RQIWAKLLQRKTETGIPYLFFKDNANAGRPDVY 249 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 ++H+SNLC+EI L SS +E+ VC L S+NLL FD K L Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303 Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D V+ N +EKA K HRA+GLG++G+ S L +I + S EA++ + Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + + + AS ELA G KG Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN+ M++APT + + I G VS SI+P N YVK N F Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L LKQ+ L E + + +DGS+ ++ + + K++ T EI + +I+ A++RQK Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QS+N+ + + L+ +Y A +GLK+ YY S SA V Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548 >gi|254720035|ref|ZP_05181846.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. 83/13] gi|306839413|ref|ZP_07472227.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. NF 2653] gi|306405536|gb|EFM61801.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella sp. NF 2653] Length = 738 Score = 312 bits (798), Expect = 3e-82, Method: Composition-based stats. Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + + DG L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + RV M Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQILAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRANPI--EGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S E V+ + +++HA+ AS +A E ++ F+ S + G + D A Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568 Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628 Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + ++ G +F+ N+ + Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LR 904 +R Sbjct: 718 IR 719 >gi|23500071|ref|NP_699511.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis 1330] gi|62317764|ref|YP_223617.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 1 str. 9-941] gi|83269750|ref|YP_419041.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis biovar Abortus 2308] gi|148558300|ref|YP_001257347.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ovis ATCC 25840] gi|161620389|ref|YP_001594275.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella canis ATCC 23365] gi|225686157|ref|YP_002734129.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis ATCC 23457] gi|256015099|ref|YP_003105108.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella microti CCM 4915] gi|260756871|ref|ZP_05869219.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 6 str. 870] gi|260760302|ref|ZP_05872650.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 4 str. 292] gi|260763542|ref|ZP_05875874.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260882685|ref|ZP_05894299.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 9 str. C68] gi|261215814|ref|ZP_05930095.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|261216943|ref|ZP_05931224.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M13/05/1] gi|261313588|ref|ZP_05952785.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M163/99/10] gi|261319173|ref|ZP_05958370.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis B2/94] gi|261319813|ref|ZP_05959010.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M644/93/1] gi|261753310|ref|ZP_05997019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 3 str. 686] gi|265986824|ref|ZP_06099381.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M292/94/1] gi|265989660|ref|ZP_06102217.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|265993238|ref|ZP_06105795.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|23463662|gb|AAN33516.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis 1330] gi|62197957|gb|AAX76256.1| NrdE, ribonucleoside-diphosphate reductase, alpha subunit [Brucella abortus bv. 1 str. 9-941] gi|82940024|emb|CAJ13055.1| Ribonucleotide reductase large subunit:Prenyl group binding site (CAAX box) [Brucella melitensis biovar Abortus 2308] gi|148369585|gb|ABQ62457.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella ovis ATCC 25840] gi|161337200|gb|ABX63504.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella canis ATCC 23365] gi|225642262|gb|ACO02175.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella melitensis ATCC 23457] gi|255997759|gb|ACU49446.1| ribonucleotide-diphosphate reductase alpha subunit [Brucella microti CCM 4915] gi|260670620|gb|EEX57560.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 4 str. 292] gi|260673963|gb|EEX60784.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 2 str. 86/8/59] gi|260676979|gb|EEX63800.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 6 str. 870] gi|260872213|gb|EEX79282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 9 str. C68] gi|260917421|gb|EEX84282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella abortus bv. 3 str. Tulya] gi|260922032|gb|EEX88600.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M13/05/1] gi|261292503|gb|EEX95999.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M644/93/1] gi|261298396|gb|EEY01893.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis B2/94] gi|261302614|gb|EEY06111.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M163/99/10] gi|261743063|gb|EEY30989.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 3 str. 686] gi|262764108|gb|EEZ10140.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 3 str. Ether] gi|263000329|gb|EEZ13019.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella melitensis bv. 1 str. Rev.1] gi|264659021|gb|EEZ29282.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella pinnipedialis M292/94/1] Length = 713 Score = 312 bits (798), Expect = 3e-82, Method: Composition-based stats. Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + + + +K + + Y + +L + +F Sbjct: 39 AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86 Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336 Y R F F +LG Y Y L +G R E + RV M E Sbjct: 87 LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + + S + +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 Y A + +KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377 Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 G + SNLC E + CNLGS+N+ A D Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TI T++R L V D+ + + + N AIGLG M L I Y S E V Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490 Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + +++HA+ AS +A E ++ F+ S + G + D A + Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549 Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R ++ W LKK V G+ N N A+ PT +I+ I + SI P + Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G +F+ N+ + + A+ Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694 >gi|261750055|ref|ZP_05993764.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 5 str. 513] gi|261739808|gb|EEY27734.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis bv. 5 str. 513] Length = 713 Score = 312 bits (798), Expect = 3e-82, Method: Composition-based stats. Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + + + +K + + Y + +L + +F Sbjct: 39 AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86 Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336 Y R F F +LG Y Y L +G R E + RV M E Sbjct: 87 LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + + S + +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 Y A + +KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377 Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 G + SNLC E + CNLGS+N+ A D Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TI T++R L V D+ + + + N AIGLG M L I Y S E V Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490 Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + +++HA+ AS +A E ++ F+ S + G + D A + Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549 Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R ++ W LKK V G+ N N A+ PT +I+ I + SI P + Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G +F+ N+ + + A+ Sbjct: 610 IRKEGKIGRVYYPAAFMAND-------------------------------NLEYYQDAY 638 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694 >gi|60202516|gb|AAX14644.1| ribonucleotide reductase large catalytic subunit mutant [Corynebacterium stationis] Length = 720 Score = 312 bits (798), Expect = 3e-82, Method: Composition-based stats. Identities = 164/690 (23%), Positives = 277/690 (40%), Gaps = 67/690 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301 H +Y IE V+ + +++ +D ++ + K F F + Sbjct: 51 LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKSFLGA 110 Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y +G R E + RV+M A + + S F +TP Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQPATP 167 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G +L SCFL + D++ I A+ + L+K GG+ + +R GA I Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIK 227 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S G+IP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 228 HIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIR 287 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGE 533 ++ IPD+ +N LFSP +V ++ Y + Sbjct: 288 IKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVSDHYAEMVEDPRITK 347 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 +KI+A ++ + + FE+G+P+I F+D N +P G ++ SNLC+EI +S Sbjct: 348 ----KKINARHFFQTVAELQFESGYPYIMFEDTVNNANP-VKTGRINMSNLCSEILQVNS 402 Query: 594 SEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 + + S NL + D+ T+ A+R L V D ++ Sbjct: 403 PSSFNDDLSYEEMGSDISCNLGSMNIALAMDFPDFGGTVEAAIRGLTAVADKTAIDSVPS 462 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + N AIGLG M L HI Y S E ++ + + + A+ AS ++A+ER Sbjct: 463 IRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYAALRASNKIAKER 522 Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 +S FK S + GVF + + E+ ++ S W +LK V Sbjct: 523 GETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAEDWADLKAEVMEH 582 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815 G+ N N A+ PT +I+ I + SI P + ++ G + N+ Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 A+E+ +I++ + K++DQ SL L Sbjct: 637 -------------------------NLDYFQDAYEVGHEKIIDTYAVATKYVDQGLSLTL 671 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + ++ AW G+KT YY+R Sbjct: 672 FFKDTATTRDINRAQIYAWRKGIKTLYYIR 701 >gi|26249070|ref|NP_755110.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli CFT073] gi|26109477|gb|AAN81680.1|AE016765_82 Ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli CFT073] Length = 714 Score = 312 bits (798), Expect = 3e-82, Method: Composition-based stats. Identities = 176/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + I+A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYAELVTDERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINYATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|315445212|ref|YP_004078091.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. Spyr1] gi|315263515|gb|ADU00257.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium sp. Spyr1] Length = 722 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 164/680 (24%), Positives = 283/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E IE+ R + + + L + ++ ++G Y Y L +G Sbjct: 68 DEKLDYLIEKNYYEREVLDQYSRNFVKGLLDRAYAKKFRFPTFVGAFKYYTSYTLKTFDG 127 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + + F +TPT NSG + + Sbjct: 128 KRYLERFEDRVVMVALTLASGD---TVLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEPV 184 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 185 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 244 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDIT 304 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 305 FELAKKNEDMYLFSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 361 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I ++D N +P G + SNLC+EI + + Sbjct: 362 LAELQFESGYPYIMYEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 419 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI ++R L V D + ++ ++ N++ A Sbjct: 420 DISCNLGSLNIAKA-----MDSPDFAQTIEVSIRALTAVSDQTHIWSVPSIEQGNNSSHA 474 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E V+ + + +HA+ AS +A ERG + F+ S Sbjct: 475 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYCVLYHALRASNRIAIERGTAFGGFEKS 534 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + + W +LK V+ G+ N N A+ Sbjct: 535 KYKSGEFFDKYTDQVWEPKTEKVRGLFADAGIRIPDQEDWKQLKASVQEHGIYNQNLQAV 594 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N Sbjct: 595 PPTGSISYINHSTSSIHPIASKVEIRKEGKIGRVYYPAPYMTN----------------- 637 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 638 --------------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRD 683 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 684 VNKAQIYAWRKGIKTLYYIR 703 >gi|213693324|ref|YP_002323910.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524785|gb|ACJ53532.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459506|dbj|BAJ70127.1| ribonucleotide-diphosphate reductase alpha subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 731 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 161/739 (21%), Positives = 279/739 (37%), Gaps = 78/739 (10%) Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR---- 258 ++ + +Y + A L ++ K ++ + F Sbjct: 15 ADTAAEQYDPAHDYHALNAMLNLYDADGKIQFDKDKAAEREYVTGHVAANSKQFASTAER 74 Query: 259 ---YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE 315 I + L ++ +LG Y Y L R+ Sbjct: 75 LDYLISNQYYNPDVFAQYSAEFLDRFYEHVESAGFEFGTFLGAFKFYTSYALKTFDGRLY 134 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + F R A E +A E+ + + + F +TPT N G + SCFL Sbjct: 135 L-EDFPQRCAAVALELAAGNEAQATEYADEMLAGRFQPATPTFLNLGKAQRGEPVSCFLV 193 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 + D++ I + L+K GG+ + +R LGA I +S GVIP +K+ D+ Sbjct: 194 RIEDNMESISRGINAALQLSKRGGGVALLLSNLRELGAPIKHIENQSSGVIPVMKMLEDS 253 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G R+GA YL H D+ FLD ++ D++ R + IPD+ + Sbjct: 254 FSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKSLALGVVIPDITFELAK 313 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 Q A LFSP D+ +YGK F + + ++ + I A + + + Sbjct: 314 QKAQMALFSP---YDVERVYGKSFADISVSEHYDEMVADDRIKKTYIDARKFFTTIAELQ 370 Query: 554 FETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 FE+G+P+I F+D N +P + V + E + CNLG Sbjct: 371 FESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQVQEPSAYNEDLTYAHVGRDISCNLG 430 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662 S+N+ LA T+ TA+R L +V + + + + +++N AIGLG M Sbjct: 431 SLNIAKAMDG------GLAHTVETAIRALTSVAEHTSINAVPSIRRANEEGHAIGLGQMN 484 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y S E ++ D +++HA AS LA E A+ SF S + + Sbjct: 485 LHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAYRASHALAVEHGQAFKSFATSDYAKPAG 544 Query: 722 PIDSIGLLAEVRDELAMNRT--------------SRLPWDELKKRVKTIGMRNSNCMAIA 767 + + R L + W+ L+ + G+ N N A+ Sbjct: 545 QGNYFDKYTDGRRSLEPRTAKIRELFAKYGIAIPTAANWEALRDAILKDGIYNQNLQAVP 604 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +++ N+ Sbjct: 605 PTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAAYMTND----------------- 647 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + A+EI ++++ + + +DQ SL L+ + + + L Sbjct: 648 --------------NLEYYKDAYEIGWKAIVDTYAEATQHVDQGLSLTLFFPDTATTRDL 693 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 694 NKAQIYAWRKGIKTLYYIR 712 >gi|297156720|gb|ADI06432.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces bingchenggensis BCW-1] Length = 964 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 120/628 (19%), Positives = 231/628 (36%), Gaps = 32/628 (5%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385 G + E E L F ++P FN GT + Q+S+CF+ +V D + I Sbjct: 115 GYFASPADAEIFDHELTYALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILD 174 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E M+ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 175 WYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 233 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H DVE F++ + + R D + + V Sbjct: 234 RAAKMVVLDVDHPDVEAFIEAKVKEEEKIRALRDAGFDMDLGGEDITSVQYQNANNSVRV 293 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 ++ G +F + ++ ++ A +L+RKM + P I + Sbjct: 294 NDTFMKAVESGSKFGLRARMS--------GEILEEVDAKSLFRKMAEAAWACADPGIQYD 345 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYD 619 D N G + +SN C+E + + CNL S+NL+ + +FD + Sbjct: 346 DTINHWHTSPETGRITASNPCSEYMH----LDNSSCNLASLNLMKFLDDDEAGHQRFDAE 401 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + A + + +D I +K ++ R +G+G + L Y S Sbjct: 402 RFAKVVELVITAMDISICFADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGG 461 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--AEVRDELA 737 +A ++ + S ELA G Y + + A+ D+L Sbjct: 462 RALAGAITSLMTGTSYRRSAELAAVVGPYEGYARNADAHKRVMKQHSDANGAAKRMDDLD 521 Query: 738 --MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKS 793 + + W ++ + + G RN+ +APT TI + + I+P + + K Sbjct: 522 TPVWAAATEAWQDVIRLGEKNGFRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKL 581 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF-- 849 G +VN+ + LK+ E + + + G++ + + + ++ A Sbjct: 582 VGGGSMQIVNNTVPKALKRLGYQPEQVEAIVAHIAEHGNVIDAPGLKSEHYEVFDCAMGD 641 Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I PM + + Q ++ A S + + E + ++++ IY + W +GLK R Sbjct: 642 RSISPMGHVRMMAAAQPFLSGAISKTVNMPESATVEEIEEIYFEGWKLGLKALAIYRDNC 701 Query: 908 ATSVEKSTLKGVDGKLNAVPVTDPNSST 935 S K + Sbjct: 702 KVGQPLSAKKKEEKPAEQAEPEAEKVIE 729 >gi|256157978|ref|ZP_05455896.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M490/95/1] gi|256253063|ref|ZP_05458599.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti B1/94] Length = 738 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 181/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + + DG L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQGAPE--PVAMTAGKPAKSSDG-----LDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNKNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + RV M Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S E V+ + +++HA+ AS +A E ++ F+ S + G + D A Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568 Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628 Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + ++ G +F+ N+ + Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LR 904 +R Sbjct: 718 IR 719 >gi|163844497|ref|YP_001622152.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella suis ATCC 23445] gi|163675220|gb|ABY39330.1| ribonucleoside-diphosphate reductase, alpha subunit [Brucella suis ATCC 23445] Length = 713 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 175/716 (24%), Positives = 287/716 (40%), Gaps = 91/716 (12%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + + + +K + + Y + +L + +F Sbjct: 39 AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86 Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336 Y R F F +LG Y Y L +G R E + RV M E Sbjct: 87 LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + + S + +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQVGARQGAGAVYLHAH 261 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 Y A + +KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377 Query: 574 QHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 G + SNLC+EI + CNLGS+N+ A D Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHQDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TI T++R L V D+ + + + N AIGLG M L I Y S E V Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490 Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + +++HA+ AS +A E ++ F+ S + G + D A + Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549 Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R ++ W LKK V G+ N N A+ PT +I+ I + SI P + Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G +F+ N+ + + A+ Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694 >gi|294853319|ref|ZP_06793991.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] gi|294818974|gb|EFG35974.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] Length = 738 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 182/782 (23%), Positives = 306/782 (39%), Gaps = 102/782 (13%) Query: 158 NSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTLIEKEP--- 214 ++ + EA G + + V K S L+ + + L +++ Sbjct: 5 DTSLIREREAEAVQG----APESVAMTAGK---PAKSSDGLDYHALNAMLNLYDEDGKIQ 57 Query: 215 -NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESM 273 + + AR + + + +K + + Y + +L + Sbjct: 58 LDCDRQAARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYS 105 Query: 274 MDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLAL 330 +F Y R F F +LG Y Y L +G R E + RV M Sbjct: 106 FNFVRDLFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALT 160 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQE 389 E+ A + + S + +TPT N+G + +L SCFL V D++ I ++ Sbjct: 161 LARGDEQLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINS 220 Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 L+K GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA Sbjct: 221 ALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGA 280 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V Sbjct: 281 VYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQR 340 Query: 510 LH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 ++ L Y A + +KI+A ++ + + FE+G+P+I F+D Sbjct: 341 VYGVPLTEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTV 396 Query: 568 NIRSPQQHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC E + CNLGS+N+ A Sbjct: 397 NRANPI--DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA----- 449 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D TI T++R L V D+ + + + N AIGLG M L I Y Sbjct: 450 MDAPDFGKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFY 509 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 S E V+ + +++HA+ AS +A E ++ F+ S + G + D A Sbjct: 510 GSEEGVDFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAP 568 Query: 734 DELAMNRT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 + R ++ W LKK V G+ N N A+ PT +I+ I + SI P Sbjct: 569 ATEKVRRIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHP 628 Query: 785 SYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 + ++ G +F+ N+ + Sbjct: 629 IVSKIEIRKEGKIGRVYYPAAFMTND-------------------------------NLE 657 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY Sbjct: 658 YYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYY 717 Query: 903 LR 904 +R Sbjct: 718 IR 719 >gi|261868067|ref|YP_003255989.1| ribonucleotide-diphosphate reductase subunit alpha [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413399|gb|ACX82770.1| ribonucleoside-diphosphate reductase, alpha chain [Aggregatibacter actinomycetemcomitans D11S-1] Length = 561 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 159/587 (27%), Positives = 249/587 (42%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E A +FY+ ++ ++ S+P N G SCF + + D + I + E +++K Sbjct: 57 EGYADKFYHYMARGYYSLSSPIWSNFGLSRGLSISCFGSYIGDSINSIMSTVAEIGVMSK 116 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R G++I NGKS G F K+ T ++QG RKG Y++ Sbjct: 117 LGGGTSGYFGDIRPRGSNI-TNNGKSNGSFAFTKLFEATIDTISQGTSRKGMFAGYIDID 175 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+LD+ + M + +++ + + Sbjct: 176 HGDIEEWLDIHT----EGNPIQLMYYGVCVSHEWLEAMKAGDPYK--------------- 216 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 +W K+L ETG P++ FKD N P + Sbjct: 217 ---------------------------RQIWAKLLQRKTETGIPYLFFKDNANADRPDVY 249 Query: 576 V---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 ++H+SNLC+EI L SS +E+ VC L S+NLL FD K L Sbjct: 250 KDRNMMIHASNLCSEIALPSSEDESFVCCLSSMNLL------YFDEWKDTDAPEVLTYFL 303 Query: 633 DNVID------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D V+ N +EKA K HRA+GLG++G+ S L +I + S EA++ + Sbjct: 304 DTVMSEFIAQSANIQYMEKANKFARRHRALGLGVLGWHSYLQSKNIAFDSFEAMQHNNMI 363 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + + + AS ELA G KG Sbjct: 364 FKLLQEKTLKASKELAHRFGEPEILKG--------------------------------- 390 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 G RN+ M++APT + + I G VS SI+P N YVK N F Sbjct: 391 ---------YGRRNTTLMSVAPTKSSSFILGSVSPSIEPFKSNYYVKDLSKIKVVYKNPF 441 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L LKQ+ L E + + +DGS+ ++ + + K++ T EI + +I+ A++RQK Sbjct: 442 LEALLKQKSLDREDIWESILLNDGSVQHLNELTEQEKEVFKTFSEISQLSVIQQAAQRQK 501 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QS+N+ + + L+ +Y A +GLK+ YY S SA V Sbjct: 502 YIDQGQSVNIMVHPGTPARDLNQLYLTAEELGLKSIYYQYSMSAAQV 548 >gi|9629746|ref|NP_045238.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 4] gi|2605964|gb|AAC59536.1| 21 [Equid herpesvirus 4] Length = 789 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 169/685 (24%), Positives = 283/685 (41%), Gaps = 65/685 (9%) Query: 272 SMMDFDLVYLANDLKYE-RDF-AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 +DF L + E RD + + Y + G R+E FF+R+A Sbjct: 108 EHIDFVQKTLNSFETSEYRDLCSLGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTAT 167 Query: 330 LKETEK--------------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 E+ F+ L+ + +TP + G ++SC+L Sbjct: 168 HYTMEQPAMARVLVSGEVGWTYIFRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLN 227 Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D I ++E + GG+G T G S+GV+ LK+ + Sbjct: 228 PRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNT-----PPTEGCSRGVMALLKLLDS 282 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKR 492 +A+N G+R VC Y E WH D+ L++R D+ R ++ W PDLF R Sbjct: 283 MTMAINSDGERPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDR 342 Query: 493 VT-----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 ++ D S L +YG +F YE ER + I + Sbjct: 343 YQRYVDGESGIMWTLFDDTASHLCHMYGNDFTREYERLERCGFGID-----AIPIQDMAF 397 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP--QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ++ TG P++ FKD CN + G + SNLCTEI ++ + VCNL SI Sbjct: 398 IIVRSAVMTGSPFLMFKDACNRHYHFDMRKRGAIMGSNLCTEIIQHADETQNGVCNLASI 457 Query: 606 NLLAHFA--------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL A FD+ L TA ++ ++ + + K++K +R++G Sbjct: 458 NLPKCLALPPPNIAGVPYFDFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLG 517 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLW 716 LG+ G + +L + ASPEA ++ + E + +++ AS L + + F+ S + Sbjct: 518 LGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKY 577 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 +G P D + T+R W L+ +K G+ NS +A PT + + + Sbjct: 578 SRGELPFD---------AYPNVTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVT 628 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGN 833 S+ P Y NL+ K +G+ N L+ ++ ++ +S L+ S+ Sbjct: 629 ESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVG 688 Query: 834 IER-IP-DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLD 886 +P TAFE D LI + R ++DQ+QS++L++ EP ++ Sbjct: 689 AFGDLPVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIM 748 Query: 887 FIYRQAWLMGLKT-TYYLRSRSATS 910 + A+ GLKT YY + + AT+ Sbjct: 749 NLLVHAYKRGLKTGMYYCKIKKATN 773 >gi|1710389|sp|P50642|RIR1_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|515832|emb|CAA53100.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4] Length = 789 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 169/685 (24%), Positives = 283/685 (41%), Gaps = 65/685 (9%) Query: 272 SMMDFDLVYLANDLKYE-RDF-AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 +DF L + E RD + + Y + G R+E FF+R+A Sbjct: 108 EHIDFVQKTLNSFETSEYRDLCSLGLQSALKYEEMYLAKMRGGRLESMGQFFLRLATTAT 167 Query: 330 LKETEK--------------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 E+ F+ L+ + +TP + G ++SC+L Sbjct: 168 HYTMEQPAMARVLVSGEVGWTYIFRAFFTALAGQVVIPATPIMLFGGRDCGSMASCYLLN 227 Query: 376 --VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D I ++E + GG+G T G S+GV+ LK+ + Sbjct: 228 PRVTDMNSAIPALMEEVGPILCNRGGIGLSLQRFNT-----PPTEGCSRGVMALLKLLDS 282 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKR 492 +A+N G+R VC Y E WH D+ L++R D+ R ++ W PDLF R Sbjct: 283 MTMAINSDGERPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDR 342 Query: 493 VT-----QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 ++ D S L +YG +F YE ER + I + Sbjct: 343 YQRYVDGESGIMWTLFDDTASHLCHMYGNDFTREYERLERCGFGID-----AIPIQDMAF 397 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP--QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 ++ TG P++ FKD CN + G + SNLCTEI ++ + VCNL SI Sbjct: 398 IIVRSAVMTGSPFLMFKDACNRHYHFDMRQRGAIMGSNLCTEIIQHADETQNGVCNLASI 457 Query: 606 NLLAHFA--------NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 NL A FD+ L TA ++ ++ + + K++K +R++G Sbjct: 458 NLPKCLALPPPNIAGVPYFDFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLG 517 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLW 716 LG+ G + +L + ASPEA ++ + E + +++ AS L + + F+ S + Sbjct: 518 LGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKY 577 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 +G P D + T+R W L+ +K G+ NS +A PT + + + Sbjct: 578 SRGELPFD---------AYPNVTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVT 628 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDLWDEAMISDLKYHDGSIGN 833 S+ P Y NL+ K +G+ N L+ ++ ++ +S L+ S+ Sbjct: 629 ESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVG 688 Query: 834 IER-IP-DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-----SGKKLD 886 +P TAFE D LI + R ++DQ+QS++L++ EP ++ Sbjct: 689 AFGDLPVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIM 748 Query: 887 FIYRQAWLMGLKT-TYYLRSRSATS 910 + A+ GLKT YY + + AT+ Sbjct: 749 NLLVHAYKRGLKTGMYYCKIKKATN 773 >gi|317506845|ref|ZP_07964617.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] gi|316254773|gb|EFV14071.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] Length = 728 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 166/679 (24%), Positives = 280/679 (41%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +E + + L + ++ +LG Y Y L +G Sbjct: 75 EKLDYLVENEYYEPEVLGRYSREFVKGLFDQAYAKKFRFPTFLGAFKYYTSYTLKTFDGK 134 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + + VA+ LA E+ A + + F +TPT N G + + S Sbjct: 135 RYLERFEDRVVMVALALA---DGDEELASQLVEEIIEGRFQPATPTFLNCGKKQRGEPVS 191 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K+ Sbjct: 192 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREAGAPIKQIENQSSGVIPVMKL 251 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 252 LEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITF 311 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER-QADRGEIKVFRKISAVALWRKM 549 + +N LFSP D+ +YG F + + E +KI+A ++ + Sbjct: 312 ELAKRNDDMYLFSP---YDVERVYGVPFAEVSVTEKYFEMVDDERIRKKKINAREFFQTI 368 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I ++D N +P G + SNLC+EI S + Sbjct: 369 AELQFESGYPYIMYEDTVNRANPI--DGRITHSNLCSEILQVSTASTFNADLSYSHIGKD 426 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D T+ T++R L +V D ++ + N AI Sbjct: 427 ISCNLGSLNIAKT-----MDSPDFGRTVETSIRALTSVSDQTRIDSVPSIAEGNEQSHAI 481 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L I Y S E ++ + + +HA+SAS ++A ER A++ F+ S Sbjct: 482 GLGQMNLHGYLARERIHYGSEEGIDFTNIYFYTVLYHALSASNKIAIERGRAFTGFERSK 541 Query: 716 WDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G F + E + + + + W LK+ V+ G+ N N A+ Sbjct: 542 YASGEFFEKYLTQSWEPKTERVRELFERAGVAIPTVADWQRLKESVQAHGIYNQNLQAVP 601 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +L N+ Sbjct: 602 PTGSISYINHSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLAND----------------- 644 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + A+EI +I++ + + +DQ SL L+ + + + + Sbjct: 645 --------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDI 690 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 691 NKAQIYAWRKGIKTLYYIR 709 >gi|300771014|ref|ZP_07080891.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingobacterium spiritivorum ATCC 33861] gi|300762287|gb|EFK59106.1| ribonucleotide-diphosphate reductase subunit alpha [Sphingobacterium spiritivorum ATCC 33861] Length = 701 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 171/706 (24%), Positives = 304/706 (43%), Gaps = 54/706 (7%) Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L ++ + + + + Y+ E +E + + N + Sbjct: 25 YSLHKDKEAVRAYFLEYVNKNTVFFYTLKEKIDYLIEQNYYINFYEWFTFEQMEEVFNFV 84 Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ ++ + Y L + +E + + VA+ LA +E +A+E+ Sbjct: 85 YAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVVAVALFLAREEG--VAKAIEYA 142 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + + +TPT N+G + +L SCFL + D+L GI A+ L+ GG+ Sbjct: 143 EIFINQEYQPATPTFLNAGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSIGGGVSF 202 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G I G G++ GV+P +K+ DT NQ G+R GA YL +H D+EEF Sbjct: 203 NISKIRARGEAIKGVEGRAGGVLPIMKIMEDTFSYANQLGQRPGAGAVYLNIFHSDIEEF 262 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K D++ R ++ +PD FM+ ++ L P V + Y E + Sbjct: 263 LDCKKINVDEKVRIKSLSIGIIVPDKFMELAEKDEAAYLIYPHTVMQEYGQYLDELD-MD 321 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 YE IK +KI+A L K+ E+G+P+I FK+ N +G V S Sbjct: 322 LMYEELITNPNIKK-KKINARHLLVKIAQTQKESGYPYIFFKENANREHALNGLGKVKFS 380 Query: 583 NLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 NLCTEI N +E + S NL + D ++ T++TA+R L V Sbjct: 381 NLCTEIMQVSEVSDINIYGKEDTIRYGISCNLGSLNIATVMDNKRIKETVKTAMRALTVV 440 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D+ + + K+N ++GLG M L I Y S EA++ A+ +++++ Sbjct: 441 SDVTDIEMVPSIAKANRELHSVGLGAMNLHGFLAKSFIMYESDEALDFANTFFMMMNYYS 500 Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWD 747 + AS+E+A+E + + + S + G + D + +V++ M+ + W Sbjct: 501 LEASMEIAKERQRTFVGCEKSAYADGTYFDKYLNRDYMPKSDKVKELFEGMHIPTIEDWA 560 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +LK++VK G+ ++ +AIAP + + I + S+ P + V+ +L Sbjct: 561 QLKEQVKEHGVYHAYRLAIAPNQSTSYIMNATASVMPIVDIIEVREYGDSTTYYPMPYLT 620 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ +A+++D M ++ S Q+ I Sbjct: 621 ND-------------------------------NYFYFKSAYDMDQMKVLRLISVIQRHI 649 Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 DQ S L+ + S + L Y A +GLK+ YY R+R +T E Sbjct: 650 DQGVSTILHTNSKDSTRDLAKYYIYAHKLGLKSLYYTRTRKSTIDE 695 >gi|194432998|ref|ZP_03065281.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] gi|194418725|gb|EDX34811.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 1012] Length = 701 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|265985044|ref|ZP_06097779.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. 83/13] gi|264663636|gb|EEZ33897.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella sp. 83/13] Length = 713 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + + + +K + + Y + +L + +F Sbjct: 39 AARQYFLQHVNQNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86 Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336 Y R F F +LG Y Y L +G R E + RV M E Sbjct: 87 LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + + S + +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 Y A + +KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQILAEIQFESGYPYIMFEDTVNRANPI 377 Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 G + SNLC E + CNLGS+N+ A D Sbjct: 378 --EGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TI T++R L V D+ + + + N AIGLG M L I Y S E V Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490 Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + +++HA+ AS +A E ++ F+ S + G + D A + Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549 Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R ++ W LKK V G+ N N A+ PT +I+ I + SI P + Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G +F+ N+ + + A+ Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694 >gi|157159104|ref|YP_001463985.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli E24377A] gi|157081134|gb|ABV20842.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E24377A] Length = 714 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + N D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTDHDISCNLGSLNIANTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|261220159|ref|ZP_05934440.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti B1/94] gi|265996494|ref|ZP_06109051.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M490/95/1] gi|260918743|gb|EEX85396.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti B1/94] gi|262550791|gb|EEZ06952.1| ribonucleotide-diphosphate reductase subunit alpha [Brucella ceti M490/95/1] Length = 713 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 174/716 (24%), Positives = 285/716 (39%), Gaps = 91/716 (12%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 AR + + + +K + + Y + +L + +F Sbjct: 39 AARQYFLQHVNKNTVFFHNLREKLDYLVAEGYY------------EQTVLDQYSFNFVRD 86 Query: 280 YLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKE 336 Y R F F +LG Y Y L +G R E + RV M E Sbjct: 87 LFDEA--YARKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYED---RVCMVALTLARGDE 141 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 + A + + S + +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 142 QLARDLVEEIISGRYQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSK 201 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL Sbjct: 202 RGGGVALCLTNLREAGAPIKQIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLHAH 261 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 262 HPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVQRVYGVPL 321 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 Y A + +KI+A ++ + + FE+G+P+I F+D N +P Sbjct: 322 TEISVTEKYREMVNDAQIAK----KKINAREFFQVLAEIQFESGYPYIMFEDTVNRANPI 377 Query: 574 QHVGVVHSSNLC------------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKL 621 G + SNLC E + CNLGS+N+ A D Sbjct: 378 --DGRITMSNLCSEILQVSEASLFHEDLSYEYLGKDISCNLGSLNIAAA-----MDAPDF 430 Query: 622 ASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 TI T++R L V D+ + + + N AIGLG M L I Y S E V Sbjct: 431 GKTIETSIRALTAVSDMSHIGCVPSVARGNAESHAIGLGQMNLHGYLARERIFYGSEEGV 490 Query: 681 EIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + + +++HA+ AS +A E ++ F+ S + G + D A + Sbjct: 491 DFTNIYFYTVAYHAVRASNRIAVETGKSFKGFEKSKYASGEY-FDKYTDQAWAPATEKVR 549 Query: 740 RT---------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 R ++ W LKK V G+ N N A+ PT +I+ I + SI P + Sbjct: 550 RIFEDAGIAIPTQDDWCALKKAVMEGGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIE 609 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G +F+ N+ + + A+ Sbjct: 610 IRKEGKIGRVYYPAAFMTND-------------------------------NLEYYQDAY 638 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 639 EIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 694 >gi|145296528|ref|YP_001139349.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glutamicum R] gi|140846448|dbj|BAF55447.1| hypothetical protein [Corynebacterium glutamicum R] Length = 715 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 165/680 (24%), Positives = 274/680 (40%), Gaps = 74/680 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +E ++ + + L + +LG Y Y L +G Sbjct: 62 EKIDYLVENKYYDPIVLDKYDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGR 121 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M A + + S F +TPT NSG + S Sbjct: 122 RYLERFED---RVCMVALTLADGDRPLAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVS 178 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 179 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKL 238 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 239 LEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 298 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRK 548 + +N LFSP D+ +YGK F E+Y+ D I+ + I+A ++ Sbjct: 299 ELAKRNDDMYLFSP---YDVERIYGKPFADISITEHYDEMVDDDRIRKSK-INARQFFQT 354 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I ++D N G + SNLC+EI + E Sbjct: 355 LAEIQFESGYPYIMYEDTVNA--SNPIEGRITHSNLCSEILQVSTPSEFNDDLTYAEVGE 412 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D TI TA+R L V + + ++ +K N A Sbjct: 413 DISCNLGSLNVAMAM-----DSPNFEKTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHA 467 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M H+ Y S EA++ + + + + AS ++A ER + +F+ S Sbjct: 468 IGLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENS 527 Query: 715 LWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D + E+ + ++ + W LK V G+ N N A+ Sbjct: 528 KYATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAV 587 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G + N+ Sbjct: 588 PPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND---------------- 631 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + A+EI +I++ + K++DQ SL L+ + + + Sbjct: 632 ---------------NLEYFEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRD 676 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 677 INRAQIYAWRKGIKTLYYIR 696 >gi|320640664|gb|EFX10200.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O157:H7 str. G5101] Length = 714 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 291/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TA Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAG 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + + + + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|331664232|ref|ZP_08365138.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] gi|331058163|gb|EGI30144.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA143] Length = 714 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFITTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERSETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|154252043|ref|YP_001412867.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Parvibaculum lavamentivorans DS-1] gi|154155993|gb|ABS63210.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Parvibaculum lavamentivorans DS-1] Length = 771 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 140/615 (22%), Positives = 243/615 (39%), Gaps = 86/615 (13%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTPTL 358 +G+ ++ + RVA LA E + A F+ ++ + F+ + L Sbjct: 11 MKYRLHGPDGTPVDLTVDDSWRRVANALAEAEAPEARAHWAKRFHEAMAGYRFLPAGRIL 70 Query: 359 FNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 +GT L +CF+ +PD + GIF L+E A+ + GG+G D++ +R GA + G Sbjct: 71 AGAGTGRDVTLFNCFVMGEIPDTMEGIFQNLKEAALTMQQGGGIGYDFSTLRPKGAPVKG 130 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 + G + F+ V + + G R+GA+ A + H D+E F++ ++ + R Sbjct: 131 VGADASGPLSFMDVWDAMCRTIMSAGSRRGAMMATMRCDHPDIEAFIEAKQ----EPGRL 186 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 N + D FM V +A W L V Sbjct: 187 TMFNLSVLATDAFMAAVKADADWELTFG-----------------------------GTV 217 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEE 596 F+ + A ALW +++ + P + F D N R+ + +H++N C E L Sbjct: 218 FKTLKARALWDRIIAATYAYAEPGVIFIDRINARNNLYYAETIHATNPCGEQPLPPY--- 274 Query: 597 TAVCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNH 651 C LGSINL A D +L+ + AVR +DN ID++ + + + Sbjct: 275 -GACLLGSINLAALVKEPFTENAHIDESELSELVHVAVRAMDNTIDVSRFPLPEQRHEAT 333 Query: 652 THRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF 711 R IGLG+ G AL + Y S +V + + M+ +S A ASV++A+E+G + F Sbjct: 334 AKRRIGLGVTGLADALIMCRARYGSEASVTLIRKWMKVLSRAAYLASVDIAKEKGPFLLF 393 Query: 712 KGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + G T +++ + G+RN+ +IAPT T Sbjct: 394 VADAYLAG--------------------ETISALDKDIRDAIAEHGIRNALVTSIAPTGT 433 Query: 772 IANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ G S I+P + Y + + D T + + + + G+ Sbjct: 434 ISLFAGNVSSGIEPVFAYGYKRKVLMPDGTRREEHV----------RDQAVEKFREMFGA 483 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 + A ++ P I + Q +ID + S + + + S +Y Sbjct: 484 EAALP-------DYFVNAQDLSPAAHIAVQAAVQDYIDSSISKTINVPADISFDDFKSVY 536 Query: 890 RQAWLMGLKTTYYLR 904 A+ GLK R Sbjct: 537 MDAYEKGLKGCTTYR 551 >gi|169827409|ref|YP_001697567.1| ribonucleoside-diphosphate reductase subunit alpha [Lysinibacillus sphaericus C3-41] gi|168991897|gb|ACA39437.1| Ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus sphaericus C3-41] Length = 697 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 166/693 (23%), Positives = 300/693 (43%), Gaps = 71/693 (10%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQI- 300 + ++ Y I V ++ +D +++ ++ K D+ F + Sbjct: 35 LEYVNVRLRYFIDIEEKIRYLVDEGYYEKAFIDMYEMDFIKKLYKKAYDYNFRFPSFMSA 94 Query: 301 --LYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 YD Y + +E + + +A+ LA T +R+VE + +TP Sbjct: 95 SKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTVLAERSVE----AMMEAYQPATP 150 Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T NSG + +L SCF ++ D + I + L++ GG+G + T +R LG I Sbjct: 151 TALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIK 210 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 ++ GVIP K+ ++ NQ G+R G+ YL +H D+E F+ +K DD+ R Sbjct: 211 EILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIR 270 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533 ++T IP +F + + ++ LFSP D+ +YGK E Y D + Sbjct: 271 LATLSTGIIIPSIFFELMKRDKDIVLFSP---YDIFKVYGKRMSEISISEMYYELLDNPK 327 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE------ 587 I+ ++++A L+ ++ FE+G+P+ F D N P +++G V SNLCTE Sbjct: 328 IRKIKRLNARRLYTEVKKAQFESGYPFEIFDDNVNDVHPLKNIGRVKMSNLCTEILQVQE 387 Query: 588 ------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 + CNLGSI++ A D++ L T + + + I Sbjct: 388 TSVITDQDQPNEYGLDVSCNLGSIDIHAASKV--NDFEALIDTAMHLLTNVSQMTHIKN- 444 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + K+N ++GLG M L I Y S +++ D ME ++++++ +S+E+ Sbjct: 445 -VPSVAKANQLMHSVGLGCMNLHGHLVTEGIMYGSKDSIHFMDRFMEAMNYYSLKSSMEM 503 Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVK 754 A+E+ + F+ S + G++ + E + + W LK+ V Sbjct: 504 AKEKAETFYRFEDSDYASGIYFDQYVNKTEEELSPAVLKALGNIPIITSKMWGLLKQDVM 563 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+ +S +AIAPT +I+ I + SI P + + V+ L N Sbjct: 564 QYGLFHSYRLAIAPTGSISYIRSCTASISPCTERVEVRDYADSRTIYPMPHLTN------ 617 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + ++ A+++DP LI+ + QK +DQ S+ Sbjct: 618 -------------------------ENSHLYVEAYDVDPYDLIDLYAASQKHVDQGISMT 652 Query: 875 LYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY+ + + ++L +Y AW+ G+K+ YY+R R Sbjct: 653 LYVTDNWTTEQLAKVYIYAWVKGIKSVYYVRQR 685 >gi|19553728|ref|NP_601730.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|62391369|ref|YP_226771.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glutamicum ATCC 13032] gi|41326710|emb|CAF21192.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN [Corynebacterium glutamicum ATCC 13032] Length = 715 Score = 311 bits (797), Expect = 4e-82, Method: Composition-based stats. Identities = 161/679 (23%), Positives = 270/679 (39%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +E ++ + + L + +LG Y Y L +G Sbjct: 62 EKIDYLVENKYYDPIVLDKYDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGR 121 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M A + + S F +TPT NSG + S Sbjct: 122 RYLERFED---RVCMVALTLADGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVS 178 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 179 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKL 238 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 239 LEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 298 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + +N LFSP D+ +YGK F + ++ + I+A ++ + Sbjct: 299 ELAKRNDDMYLFSP---YDVERIYGKPFADVSITEHYDEMVDDDRIRKTKINARQFFQTL 355 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I ++D N G + SNLC+EI + E Sbjct: 356 AEIQFESGYPYIMYEDTVNA--SNPIEGRITHSNLCSEILQVSTPSEFNDDLTYAEVGED 413 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D TI TA+R L V + + ++ +K N AI Sbjct: 414 ISCNLGSLNVAMAM-----DSPNFEKTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAI 468 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M H+ Y S EA++ + + + + AS ++A ER + +F+ S Sbjct: 469 GLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSK 528 Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + D + E+ + ++ + W LK V G+ N N A+ Sbjct: 529 YATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVP 588 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G + N+ Sbjct: 589 PTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND----------------- 631 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + A+EI +I++ + K++DQ SL L+ + + + + Sbjct: 632 --------------NLEYFEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDI 677 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 678 NRAQIYAWRKGIKTLYYIR 696 >gi|332671992|ref|YP_004455000.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulomonas fimi ATCC 484] gi|332341030|gb|AEE47613.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulomonas fimi ATCC 484] Length = 715 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 175/716 (24%), Positives = 282/716 (39%), Gaps = 85/716 (11%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + AR + + + +K + +E + Sbjct: 38 DREAARQYFLQHVNQNTVFFHDLDEKLDY-------------LVENKYYDPAVLAQYDRA 84 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + RV M Sbjct: 85 FIKTLFEYAYSKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALSLAAG 141 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 + AV + + S F +TPT N G + SCFL + D++ I + L Sbjct: 142 DQDFAVNLVDEIVSGRFQPATPTFLNLGKAQRGEPVSCFLLRIEDNMESIARGINSALQL 201 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL Sbjct: 202 SKRGGGVALLLSNIREHGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLH 261 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ + Sbjct: 262 AHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEPMYLFSP---YDVERV 318 Query: 514 YGKEF------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 YG F E YE + A R KISA ++ + + FE+G+P++ F+D Sbjct: 319 YGVPFADVNVTEKYYEMVDNAAIR-----KTKISAREFFQTLAELQFESGYPYVMFEDTV 373 Query: 568 NIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDK 620 N +P G + SNLC+EI T N V S NL + D Sbjct: 374 NRANPI--KGKITHSNLCSEILQVSTPSTFNEDLSYAEVGRDISCNLGSMNIALSMDSPD 431 Query: 621 LASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++ TA+R L V D + ++ K +N AIGLG M L I Y S E Sbjct: 432 FGKSVETAIRALTAVSDQTDIESVPSVKLANRGGHAIGLGQMNLHGYLARERIFYGSDEG 491 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----- 733 ++ + +++HAI AS LAQER A+ F+ S + G + + R Sbjct: 492 LDFTNIYFYTVAYHAIRASNLLAQERKQAFYGFEDSKYATGEYFQKYVEKEWAPRTERVR 551 Query: 734 ---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 E ++ ++ W EL V+ G+ N N A+ PT +I+ I + SI P + Sbjct: 552 VLFAEAGVHIPTQDDWRELAALVQEHGLYNQNLQAVPPTGSISYINHSTSSIHPIASKIE 611 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G F+ N+ + + A+ Sbjct: 612 IRKEGKIGRVYYPAPFMTND-------------------------------NLEYYQDAY 640 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 EI +I++ + + +DQ SL L+ + + + L+ AW G+KT YY+R Sbjct: 641 EIGYEKVIDTYAEATQHVDQGLSLTLFFKDTATTRDLNKAQIYAWKKGIKTIYYIR 696 >gi|296104352|ref|YP_003614498.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058811|gb|ADF63549.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 180/723 (24%), Positives = 297/723 (41%), Gaps = 73/723 (10%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP---------EYFCRYIEEGV 264 P+Y + A L RE K + P E + EG Sbjct: 14 PDYHALNAMLNLYD--REGRIQFGKDHDAVDAFFAAHVRPNSVTFASQDERLDYLVNEGY 71 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFM 322 + +V L +LG Y Y L +G R E + + Sbjct: 72 YEERVLSRYDRAFVVRLFERAHASGFRFQTFLGAWKYYTSYTLKTFDGKRYLESFEDRVV 131 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381 VA+ LA + ++ +E + S F +TPT N G +L SCFL + D++ Sbjct: 132 MVALTLAQGDEALAEQLME---EILSGRFQPATPTFLNCGKAQRGELVSCFLLRIEDNME 188 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ Sbjct: 189 SIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQL 248 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+GA YL H D+ FLD ++ D++ R ++ IPD+ K +NA L Sbjct: 249 GARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFKLAKENADMAL 308 Query: 502 FSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 FSP D+ +YGK F ++A + + + I+A ++++ + FE+G+P+ Sbjct: 309 FSP---YDIERIYGKAFGDVAISELYDELVADDRIRKKYINARDFFQRLAEIQFESGYPY 365 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------LGSINLLAHFAN 613 I ++D N +P G ++ SNLC+EI +S+ S NL + Sbjct: 366 IMYEDTVNRANPI--AGRINMSNLCSEILQVNSASTYDENLDYADIGKDISCNLGSLNIA 423 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 + D T+ TAVR L V D+ + ++ + N AIGLG M L I Sbjct: 424 HTMDSPDFGRTVDTAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGI 483 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP-----IDSI 726 Y SPE ++ + I++HA+ S+ LA+E ++ F+ S + G + D Sbjct: 484 AYGSPEGLDFTNLYFYTITWHALHTSMMLARERNQRFAGFEQSRYASGEYFSQYLESDWQ 543 Query: 727 GLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 +VR A + +R W +L+ V G+ N N A+ PT +I+ I + SI Sbjct: 544 PKTEKVRALFARAGIVLPTREMWQQLRDDVMRHGIYNQNLQAVPPTGSISYINHATSSIH 603 Query: 784 PSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + ++ +G F+ N + Sbjct: 604 PIVSKIEIRKEGKTGRVYYPAPFMTN-------------------------------ENL 632 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTY 901 ++ A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT Y Sbjct: 633 ALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLY 692 Query: 902 YLR 904 Y+R Sbjct: 693 YIR 695 >gi|320186461|gb|EFW61189.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella flexneri CDC 796-83] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAYAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI + + E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|320180202|gb|EFW55138.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii ATCC 9905] gi|332088655|gb|EGI93768.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella dysenteriae 155-74] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|326536371|ref|YP_004300812.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133] gi|299483452|gb|ADJ19546.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage 133] Length = 803 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 166/851 (19%), Positives = 305/851 (35%), Gaps = 125/851 (14%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ G F+ ++ ++E +C G ++ + + D ++ ++++ A++ Sbjct: 1 MKVIKSSGIAQDFDPAKIIQVLEWSCEG-TQINPYELYERAQPFIKDQMTTAEIQRAIVK 59 Query: 205 SSRTLIE-KEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 + I +E +Y V + + LR+EV A + G Sbjct: 60 VAADSITVEESDYQFVASNLAMFGLRKEVYGQFDPPHLLA-----------QVKAKTDLG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHI--NGSRIEMPQAFF 321 V + + + L + ++RDF F Y G + D+Y + NG+ E PQ F Sbjct: 109 VYDPEIVQKYSAEEFEELNRYINHDRDFNFTYAGTMQMKDKYLVKDRSNGAIHETPQFTF 168 Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M + M L ++ + + + +FY+ +S TP + T Q SSC L D Sbjct: 169 MLIGMCLHQEDEKSKRLQYVKDFYDAVSLKQISLPTPIMAGVRTPTRQFSSCVLIESGDS 228 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G +R G+ I K GV PF K N + + Sbjct: 229 LDSINETSSAIISYVSKRAGIGVSGGAIRAEGSKIGPGEVKHTGVTPFWKHFNTGVHSCS 288 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG RKG+ Y WH++ E + L+ N G + R M+ + +L ++R N Sbjct: 289 QGGIRKGSATCYWPGWHLECENLIVLKNNKGIEENRIRHMDYGIQLNNLMIERYLNNDYI 348 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT-MLFETGH 558 TLFSP+ E + Q + ++I A ++ + T Sbjct: 349 TLFSPEINGGQLRDAFYADEELFRTMYEQLEATPAVRKKRIKATEYFQSLFMPERANTAR 408 Query: 559 PWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNSSS----------------------- 594 + D N + + V SNLC EI L++ Sbjct: 409 IYPQHVDNANNFGPWIRSIAPVKMSNLCAEIALHTMPLATYADRIIAVPEGSLIAFVEKY 468 Query: 595 -------------------EETAVCNLGSINL-----------LAHFANNQFDY---DKL 621 E S+N+ L+ + + FD+ D++ Sbjct: 469 GTKKAVLPTVENEFRRIGRVEDLKEGEISLNVQEDLGEIALCTLSAWVLDNFDWKNQDEV 528 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + VR LDN++D + + A K +R++G+G+ + L Y E Sbjct: 529 NRIGKVMVRALDNLLDYQDYPHQNALK-AKEYRSLGIGVTNYAGWLAANASSYEDD--HE 585 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 + E E + + ++AS++LA+E+G + + QG+ PID + + Sbjct: 586 TSHELFERLQYALVNASIDLAEEKGPSPMLYKTKYGQGLLPIDWYCKNVDD----LVAPN 641 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 + W++ + R+ GMRN A P T + + + ++ + + + K + G F Sbjct: 642 YVMDWEDTRARLIKFGMRNVTLSAQMPCETSSQVSNSTNGVERALKPVSYKQSKDGSFNQ 701 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE----IDPMWLI 857 + Y S+ + A+E + Sbjct: 702 IVP--------------------NYDINSV------------FYEFAWESAAKFGNKGYL 729 Query: 858 ESASRRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSRSATS 910 + QK+ DQ+ SLN Y S + + G K YY + + Sbjct: 730 TKMAIMQKFWDQSISLNTYYVPASYSNGKVPMSVMMDDMLFCFYYGNKNMYYHNTDDGSG 789 Query: 911 VEKSTLKGVDG 921 + S+ +G Sbjct: 790 ADDSSEAACEG 800 >gi|300941042|ref|ZP_07155561.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] gi|300454206|gb|EFK17699.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 21-1] Length = 701 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|294993445|ref|ZP_06799136.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis 210] Length = 693 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 280/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 655 VNKAQIYAWRKGIKTLYYIR 674 >gi|139472880|ref|YP_001129418.1| ORF61 [Human herpesvirus 8] gi|87196890|gb|ABD28916.1| ORF61 [Human herpesvirus 8] Length = 792 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 167/772 (21%), Positives = 293/772 (37%), Gaps = 92/772 (11%) Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYER------- 289 + H M+ P +Y+ G+ +L + F ++ L + L R Sbjct: 56 AGRLWHQIMEARCPATLKQYL--GIFRGVLGHRVESFIQKNIDALEDMLCAYRRSKAYED 113 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALK--ETEKEKRAVE---- 341 YL LYD Y L G+ E FMRV++ +A + E E Sbjct: 114 TLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARDLIE 173 Query: 342 -------------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGA 386 + L++ H C+TP L ++G QL+SCF+ ++ ++ + Sbjct: 174 DAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNEPGTLDAL 233 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + + L G+G D T + + LK+ + N R Sbjct: 234 YHDMSPLLASKSGVGLDVTSFS-----------HQKNIASCLKLVDAQVHYFNDNNIRPV 282 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504 AY+E WH + +FL+ + D R H + IP LF + ++ W LF P Sbjct: 283 GASAYMELWHSQICDFLNAKLPENPD--RCHSLFQGVCIPTLFFRMYEKDPSKLWYLFDP 340 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +L LYG F+ YE R K + ++ ++ + +TG P++ K Sbjct: 341 ATAPNLIKLYGAAFDNEYERLVRA-----GKYVSCMPLKSMMFTLIHTIIKTGSPYVLLK 395 Query: 565 DPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----------- 612 + N G+ ++ SNLC EI T+VCNL +I L Sbjct: 396 EALNEHHWTDTQGMAINCSNLCAEIVQLPGRN-TSVCNLANICLPKCLRTVESARVGTTD 454 Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 F ++ L +R AV V++ I H ++ R++G+G+ G L Sbjct: 455 ANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVERGQK-ERSMGIGVQGLADVFAEL 513 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGL 728 Y E+ E+ + + + A+ S L E + ++ S + +G F + Sbjct: 514 GYGYLDAESAELDKNIFQSMYYTAVETSHNLVLEGQGVPFHGWEVSNFAKGRFHWQTWEG 573 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 R WD L K + G+ NS +A+ PTA + + G ++S+ P + N Sbjct: 574 EDASFVP-------RHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESVYPFFAN 626 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K + N ++ DL ++ + G + + + ++ TA Sbjct: 627 ISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRERYRVFLTA 680 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLR 904 F+ P L++ A R ++DQ+QS++ +L E + L + + +GLKT YY R Sbjct: 681 FDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKTLMYYCR 740 Query: 905 S--RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +S+ + + + + SC +D EC VCQ Sbjct: 741 VQKQSSLTALQCLADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPECLVCQ 792 >gi|260856786|ref|YP_003230677.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|257755435|dbj|BAI26937.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O26:H11 str. 11368] gi|323154886|gb|EFZ41078.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli EPECa14] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYPNQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|86158906|ref|YP_465691.1| ribonucleotide reductase large subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85775417|gb|ABC82254.1| ribonucleotide reductase large subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 595 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 165/636 (25%), Positives = 267/636 (41%), Gaps = 78/636 (12%) Query: 293 FEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349 +L RY L G IE P+A F RVA +A E + A F +++ Sbjct: 4 LGENARHVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEAPAARALWAERFEARMAAL 63 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + ++PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R Sbjct: 64 ELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRP 123 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G + T+G + G + F++V + + QGG R+GA A L H DV EF+D ++ Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAA 183 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + + N + PD + + W L P Sbjct: 184 GLE-----NFNISVAAPDALFQAAARGEPWALRHPR------------------------ 214 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 V R++ A AL ++ + +G P + F D +P +G + N C E Sbjct: 215 ---GGAVVREVDAGALLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQP 271 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L C LGS+NL + D+++L + +R VR+LD+V+++N + + + Sbjct: 272 LLPF----EACTLGSVNLARFERGGRVDHERLGACVREGVRLLDDVLEVNVWPLPQIAEI 327 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 + +R IGLG+MG+ L L IPY +PEA+ +A E M F+ A +AS LA ERGA+ Sbjct: 328 SRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFP 387 Query: 710 SFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F S G P RN+ IAP Sbjct: 388 GFASSAPARAGGRP-----------------------------------RRNATVTTIAP 412 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 T T+A I G S I+P + YV+ + GD + + Sbjct: 413 TGTLAIIAGCSSGIEPLFALTYVRHAL-GDAALPEEH-PALGRALLAAGAEAALPAVRAA 470 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 G + +P+ + ++ ATA ++ P + + Q+ +D S + L + + + Sbjct: 471 GRARGVAGVPEAVARVFATAHDVAPEAHVRMQAAFQRHVDNGVSKTINLPRTATVEDVAG 530 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 YR A+ +G K R S + +G+L Sbjct: 531 AYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566 >gi|82545244|ref|YP_409191.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii Sb227] gi|81246655|gb|ABB67363.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Shigella boydii Sb227] gi|332092048|gb|EGI97126.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii 3594-74] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAYAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI + + E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|291455663|ref|ZP_06595053.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium breve DSM 20213] gi|291382591|gb|EFE90109.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium breve DSM 20213] Length = 731 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 159/704 (22%), Positives = 271/704 (38%), Gaps = 71/704 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + Y A + + E I + L + ++ Sbjct: 50 KAAEREYVTGHVAANIKRFDSTAERLEYLISNQYYNPAVFNQYSAEFLDRIYEHVESAGF 109 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 +LG Y Y L R+ + + F R A E++A+E+ + + + Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGRLYL-EDFPQRCAAVALELAAGNEQQAIEYADEMLAGR 168 Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N G + SCFL + D++ I + L+K GG+ + +R Sbjct: 169 FQPATPTFLNLGKAQRGEPVSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLRE 228 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R + IPD+ + Q A LFSP D+ +YGK F Sbjct: 289 ADEKIRIKSLALGVVIPDITFELAKQKAQMALFSP---YDVERVYGKPFADISVTEHYDE 345 Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGV 578 + ++ + I A + + + FE+G+P+I F+D N +P + Sbjct: 346 MVADDRIKKTYIDARKFFTTIAELQFESGYPYIVFEDTVNRANPIEGRVTMSNLCSEILQ 405 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 V + E + CNLGS+N+ LA T+ TA+R L +V + Sbjct: 406 VQEPSAYNEDLTYAHVGRDISCNLGSLNIAKAIDG------GLAYTVETAIRALTSVAEH 459 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + +++N AIGLG M L I Y S E ++ D +++HA A Sbjct: 460 TSIDAVPSIRRANEEGHAIGLGQMNLHGFLAREGIHYGSEEGLDFTDMYFMTVAYHAYRA 519 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT--------------S 742 S LA E G + SF S + + + + R L + Sbjct: 520 SHALAVEHGHPFKSFATSDYAKPAGQGNYFDKYTDGRRSLEPRTAKVRELFAKYGIEIPT 579 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTV 801 W+ L+ + G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 580 VSDWETLRDAILKDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYY 639 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +++ N+ + + A+EI ++++ + Sbjct: 640 PAAYMTND-------------------------------NLEYYEDAYEIGWKAIVDTYA 668 Query: 862 RRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + +DQ SL L+ + + + L+ AW G+KT YY+R Sbjct: 669 EATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712 >gi|311278370|ref|YP_003940601.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] gi|308747565|gb|ADO47317.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterobacter cloacae SCF1] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 181/707 (25%), Positives = 286/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 + R K R+ + + E + G + + Sbjct: 29 SGRIQFSK-DRDAVAAFMSAHVQPNSAIFASA-QERLDWLVAGGYYDEAVLTRYEQAFVT 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 DLFACASAYGFQFQTFLGAWKFYTSYTLKTFDGKRY--LEHFPDRVVMVALTLAQGDEAL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G +L SCFL + D++ I A+ L+K Sbjct: 145 ARQLTDEMLSGRFQPATPTFLNCGKMQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLNAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ + +NA LFSP D+ LYGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVTIPDITFRLARENARMALFSP---YDVERLYGKA 321 Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + + +V + ISA ++ + + FE+G+P+I F+D N SP Sbjct: 322 FGDIAVTEMYEQLVADARVRKTWISAREFFQTLAEIQFESGYPYIMFEDTVNRASPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVCN-------LGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC EI +S+ E S NL + + D T+ TAV Sbjct: 380 GRINMSNLCAEILQVNSASEFDENLDYARVGRDISCNLGSLNIAHTMDSPDFGRTVATAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + + + N AIGLG M L I Y SPEA+E + Sbjct: 440 RALTAVSDMSHIRAVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALEFTNLYFC 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA---MN 739 I++HA++ S+ LA+ER +++ F S + G + D VR + Sbjct: 500 AITWHALNTSMLLARERGQSFAGFAQSRYASGEYFAAYLEGDWQPKTQVVRTLFQRAGIT 559 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N AIAPT +I+ I + SI P + ++ +G Sbjct: 560 LPTRDMWRQLRDAVMRYGIYNQNLQAIAPTGSISYINHATSSIHPVASKIEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N+ ++ A++I P +I+ Sbjct: 620 VYYPAPFMTND-------------------------------NLHLYQDAYDIGPEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + K +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATKHVDQGLSLTLFFPDTATTRDINRAQIYAWKKGIKTLYYIR 695 >gi|307727744|ref|YP_003910957.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1003] gi|307588269|gb|ADN61666.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1003] Length = 859 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 146/611 (23%), Positives = 248/611 (40%), Gaps = 76/611 (12%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA G+A E E + +VE F + L L +CF+ Sbjct: 46 SADDVFRRVAHGVAAAEPEALRESVEALFVDNLRHGALGAGRIMSAAGSGIAATLINCFV 105 Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D + G I+ AL + A + GG+G +++ +R GA +H T+ + G Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVHTTSSSASGPC 165 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNVSVGV 221 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V +N W L E S G + + V+ + A + Sbjct: 222 TDQFMRAVEENELWQLVHRAEPSPALRAAGDM----------RQRDDGMWVYSERPAREI 271 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +++ ++ P I F N + + V + ++N C E L + CNLG + Sbjct: 272 WDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 327 Query: 606 NLLAHF---------ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL FD+D LA RT VR LDNV+D+ + + + R I Sbjct: 328 NLTRFVLEPFAQLKGRKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRI 387 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G L +L + Y S E + A + A ASVELA+ERGA+ F + Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAKRY 447 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 L + ++LK ++ G+RNS+ ++IAPT T++ Sbjct: 448 -------------------LEPGTFASRLPEDLKDAIRRDGIRNSHLLSIAPTGTVSLAF 488 Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 S I+P++ Y + ++ + + E L G G++ Sbjct: 489 ADNASNGIEPAFSWTYKRMK-----------VMADGSRETFDVEDYAYRLYRELG--GDV 535 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893 R+PD +A E+ ++ + Q ++D + S + + + + + +Y AW Sbjct: 536 SRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPFEAFESLYFDAW 591 Query: 894 LMGLKTTYYLR 904 GLK R Sbjct: 592 KSGLKGLATYR 602 >gi|160896563|ref|YP_001562145.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Delftia acidovorans SPH-1] gi|160362147|gb|ABX33760.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Delftia acidovorans SPH-1] Length = 840 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 147/696 (21%), Positives = 264/696 (37%), Gaps = 85/696 (12%) Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE 332 M +L + + + L +L ++Y E+ + RVA LA E Sbjct: 27 MHRENLGRAQDAAD------LQPISLDVLREKYLKDGETGVGEL----YARVARALASVE 76 Query: 333 -TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD--------LYG 382 + + + + + +GT L +CF+ V D G Sbjct: 77 PEARRAECEALFLANLQAGAIGAGRIMSAAGTDLQATLINCFVQPVGDCIQGVDDGGYPG 136 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 I+ AL+E A + GG+G D++ +R GA + T + G ++ V + + V G Sbjct: 137 IYEALREAAETMRRGGGVGYDFSRIRPRGAEVRATASLASGPCSYINVFDQSCATVESAG 196 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA L H DV EF+ ++ G R ++ N + + D FM+ V ++ W L Sbjct: 197 ARRGAQMGVLRIDHPDVLEFITAKRTPG----RWNNFNVSVGVSDAFMQAVAEDQPWHLV 252 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 G + V++ + A LW ++ ++ P I Sbjct: 253 HRAR-------PGTALLEQGAHQRADGQ----WVYQTLPARTLWDTIMRSAYDFAEPGIL 301 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ------- 615 F D N + ++ + ++N C E L S C+LG + L + Sbjct: 302 FLDHINDDNNLRYCEEIAATNPCGEQPLPSY----GCCDLGPVILTRFVRHPFGFAGEPV 357 Query: 616 FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 FD++ + VR LDNV+++ + + ++ + R IG+G G +AL +L + Y Sbjct: 358 FDFEAFERAVAVQVRALDNVLELTWWPLPQQREESEAKRRIGVGFTGMGNALAMLRLRYD 417 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 +PE +A E + A ASVELA+E+GA+ F + Sbjct: 418 APEGRAMAARIAERMRDAAYGASVELAREKGAFPKF-------------------DADGY 458 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793 LA + + L++R++T G+RNS+ ++IAPT T++ S I+P + Y + Sbjct: 459 LAEGTFASRLPEALRQRIRTHGIRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWTYKRK 518 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + D + V + + G + + +A ++ Sbjct: 519 KRTADGGS-AEYAVED---------HAWRLYRSLGGDVQQLP-------AYFVSALQMPA 561 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 I Q ++D A S + + + + +YRQAW GLK R + Sbjct: 562 AGHIAMMQAVQPFVDTAISKTVNVAADYPYEDFKDLYRQAWKAGLKGLATYRPNTILGAV 621 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 T + A P S++ + + S Sbjct: 622 LETHAPESAEKPASPAPAGASASAPDPLRTVIESRP 657 >gi|323188443|gb|EFZ73729.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli RN587/1] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYDELVADEHIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|331658786|ref|ZP_08359728.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] gi|331053368|gb|EGI25397.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli TA206] Length = 714 Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|307132177|ref|YP_003884193.1| ribonucleoside-diphosphate reductase 2, subunit alpha [Dickeya dadantii 3937] gi|306529706|gb|ADM99636.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Dickeya dadantii 3937] Length = 715 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 177/743 (23%), Positives = 294/743 (39%), Gaps = 85/743 (11%) Query: 204 FSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY 259 ++ + P +Y + A + + ++ + + +F Sbjct: 1 MATAEFLTDAPSSQLDYHALNAMLNIYDADGRIQFEQDRQAIQVYFRDHVLPRTRHFPSL 60 Query: 260 IEE-------GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING- 311 E+ G + +V L R +LG Y Y L Sbjct: 61 EEKLRWLQQEGYYEPQVLARYQLDFIVELFQRAAEHRYQFQSFLGAFKFYTSYALKTFDG 120 Query: 312 -SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 +E VA+ LA + + A + + + S F +TPT N G + +L Sbjct: 121 SQYLESYDDRACMVALTLAQGD---TQLARQLVDEMMSGRFQPATPTFLNCGKQQRGELV 177 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ T +R GA I +S GVIP +K Sbjct: 178 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIMK 237 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD R+ D++ R ++ IPD+ Sbjct: 238 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDIT 297 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547 ++ N LFSP D+ +YG E Y+ I+ + ++A ++ Sbjct: 298 LRLARANQDMHLFSP---YDVERVYGMPLSEISVSEKYDELVSHPGIRKW-TLNARQFFQ 353 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597 + + FE+G+P++ F+D N +P G + SNLC+EI S + E Sbjct: 354 TLAEIQFESGYPYLMFEDTVNRHNPV--AGRITMSNLCSEILQVSRASEYQEDLNYRQVG 411 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654 CNLGS+N+ D LA T+ AVR L V D+ + + N Sbjct: 412 KDISCNLGSLNIARV-----MDGGNLARTVEIAVRALTAVSDMSHIGAVPSIANGNTESH 466 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKG 713 AIGLG M L + Y S EA++ + +++HA+ S LAQE ++ F Sbjct: 467 AIGLGQMNLHGYLAREGLFYGSEEALDFTNLYFYAVTYHALRTSSRLAQERNQTFAGFAD 526 Query: 714 SLWDQGVFP-----IDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMA 765 S + G F + + VR+ A + W LK +V G+ N N A Sbjct: 527 SQYASGAFFDRYLSQEWQPVTERVRELFACAGIALPLPEDWLALKAQVMRHGLYNQNLQA 586 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT +I+ I + SI P + ++ G ++ N+ Sbjct: 587 VPPTGSISYINHATASIHPIVSRIEIRKEGKLGRVYYPAPYMTND--------------- 631 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 ++ + A+EI P +I++ + + +DQ SL L+ + + + Sbjct: 632 ----------------NQRFYQDAYEIGPEKIIDTYAVATRHVDQGLSLTLFFPDTATTR 675 Query: 884 KLDFIYRQAWLMGLKTTYYLRSR 906 ++ AW G+KT YY+R R Sbjct: 676 DINKAQIYAWKKGIKTLYYIRVR 698 >gi|1718317|gb|AAC57146.1| ORF 61 [Human herpesvirus 8 type M] gi|2246520|gb|AAB62645.1| ORF 61 [Human herpesvirus 8] gi|261853542|gb|ACY00464.1| ORF61 [Human herpesvirus 8] gi|312275209|gb|ADQ57946.1| core gene UL39 family protein [Human herpesvirus 8] Length = 792 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 167/772 (21%), Positives = 293/772 (37%), Gaps = 92/772 (11%) Query: 240 PQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF---DLVYLANDLKYER------- 289 + H M+ P +Y+ G+ +L + F ++ L + L R Sbjct: 56 AGRLWHQIMEARCPATLKQYL--GIFRGVLGHRVESFIQKNIDALEDMLCAYRRSKAYED 113 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALK--ETEKEKRAVE---- 341 YL LYD Y L G+ E FMRV++ +A + E E Sbjct: 114 TLNCGYLSAVRLYDTYVLRTMGTEPVYESVAQMFMRVSVFVACQCLEHECLYWLARDLIE 173 Query: 342 -------------FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLT--TVPDDLYGIFGA 386 + L++ H C+TP L ++G QL+SCF+ ++ ++ + Sbjct: 174 DAKSVSEMAIVEYVFGYLAAQHVCCATPILRSAGVEGGQLASCFILQPSMMNESGTLDAL 233 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 + + L G+G D T + + LK+ + N R Sbjct: 234 YHDMSPLLASKSGVGLDVTSFS-----------HQKNIASCLKLVDAQVHYFNDNNIRPV 282 Query: 447 AVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSP 504 AY+E WH + +FL+ + D R H + IP LF + ++ W LF P Sbjct: 283 GASAYMELWHSQICDFLNAKLPENPD--RCHSLFQGVCIPTLFFRMYEKDPSKLWYLFDP 340 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 +L LYG F+ YE R K + ++ ++ + +TG P++ K Sbjct: 341 ATAPNLIKLYGAAFDNEYERLVRA-----GKYVSCMPLKSMMFTLIHTIIKTGSPYVLLK 395 Query: 565 DPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA----------- 612 + N G+ ++ SNLC EI T+VCNL +I L Sbjct: 396 EALNEHHWTDTQGMAINCSNLCAEIVQLPGRN-TSVCNLANICLPKCLRTVESARVGTTD 454 Query: 613 --NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 F ++ L +R AV V++ I H ++ R++G+G+ G L Sbjct: 455 ANRPFFCFEALGDAVRVAVLVINACILGGSHPTPGVERGQK-ERSMGIGVQGLADVFAEL 513 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGL 728 Y E+ E+ + + + A+ S L E + ++ S + +G F + Sbjct: 514 GYGYLDAESAELDKNIFQSMYYTAVETSHNLVLEGQGVPFHGWEVSNFAKGRFHWQTWEG 573 Query: 729 LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 R WD L K + G+ NS +A+ PTA + + G ++S+ P + N Sbjct: 574 EDASFVP-------RHRWDALGKSIAEHGIFNSQFLAVMPTAGTSQVTGYAESVYPFFAN 626 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 + K + N ++ DL ++ + G + + + ++ TA Sbjct: 627 ISSKVTNKEEVLRPNVTFFKKVLPDDL------RVVRQYGGDVSTFPKHHRERYRVFLTA 680 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE---PSGKKLDFIYRQAWLMGLKT-TYYLR 904 F+ P L++ A R ++DQ+QS++ +L E + L + + +GLKT YY R Sbjct: 681 FDYCPFKLLDRARARAPFVDQSQSMSFFLKEDRVRNASYLRDLLLHGYRLGLKTLMYYCR 740 Query: 905 S--RSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954 +S+ + + + + SC +D EC VCQ Sbjct: 741 VQKQSSLTALQCLADPGSPPHSGMKQDGAWLPGPKNPEEESCAADPECLVCQ 792 >gi|312984311|ref|ZP_07791654.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] gi|312984330|ref|ZP_07791673.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] gi|310894276|gb|EFQ43355.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] gi|310894295|gb|EFQ43374.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus CTV-05] Length = 727 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 177/750 (23%), Positives = 313/750 (41%), Gaps = 79/750 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ + E NY +E + + + L E Sbjct: 13 DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 63 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ + + + + + + ++G Y Y L N ++ +E Sbjct: 64 YLVDNNYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 123 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + R M E+ A+ + S F +TPT N+G + + SC+L Sbjct: 124 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYVSCYLL 180 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 181 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 240 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 241 FSYANQLGQRQGAGAVYLSAHHPQILQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 300 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q + + ISA ++ + + Sbjct: 301 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPCIKKTFISARKFFQTIAEVQ 357 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 358 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNEDLSFNKTGYDVCCN 417 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL + +V+ L+ V + +K N +RAIGLG Sbjct: 418 LGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA++ GA+ FK S + G Sbjct: 474 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAEKYGAFKGFKDSSYASGD 533 Query: 721 FPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I + E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 534 YFKKFIDEEVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 593 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + V ++ Sbjct: 594 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 626 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 +I D + + A+E+ P +I+ + QK++DQ+ SL L++++ + + L+ Y Sbjct: 627 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVEDNATTRDLNKAYI 683 Query: 891 QAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 A+ + YY+R R E T Sbjct: 684 YAFKKRCNSIYYVRIREKVLAGSENLTADE 713 >gi|91212036|ref|YP_542022.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UTI89] gi|215487996|ref|YP_002330427.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O127:H6 str. E2348/69] gi|218559667|ref|YP_002392580.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli S88] gi|237706703|ref|ZP_04537184.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|312965590|ref|ZP_07779820.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|91073610|gb|ABE08491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli UTI89] gi|215266068|emb|CAS10488.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O127:H6 str. E2348/69] gi|218366436|emb|CAR04188.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli S88] gi|226899743|gb|EEH86002.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia sp. 3_2_53FAA] gi|294491935|gb|ADE90691.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli IHE3034] gi|307625753|gb|ADN70057.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli UM146] gi|312289739|gb|EFR17629.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 2362-75] gi|323951103|gb|EGB46979.1| ribonucleotide reductase [Escherichia coli H252] gi|323957112|gb|EGB52837.1| ribonucleotide reductase [Escherichia coli H263] Length = 714 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 178/732 (24%), Positives = 297/732 (40%), Gaps = 73/732 (9%) Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254 ++ L ++ +Y + A + L + K +A M + Sbjct: 5 TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 + EG + ++ L +LG Y Y L +G R Sbjct: 62 RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + F RV M E A + + + S F +TPT N G + +L SCF Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551 +NA LFSP D+ +YGK F A + + E + ++A ++++ Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADVAISEHYDELVADERIRKKYLNARDFFQRLAE 356 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + S Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + + D A T+ TAVR L V D+ + ++ + N AIGLG M Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534 Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 535 SQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594 Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ +G F+ N Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 684 WRKGIKTLYYIR 695 >gi|15610188|ref|NP_217567.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Rv] gi|31794229|ref|NP_856722.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium bovis AF2122/97] gi|121638935|ref|YP_979159.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662904|ref|YP_001284427.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|167969653|ref|ZP_02551930.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|215412906|ref|ZP_03421610.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis 94_M4241A] gi|218754816|ref|ZP_03533612.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis GM 1503] gi|224991427|ref|YP_002646116.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|254552126|ref|ZP_05142573.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188083|ref|ZP_05765557.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis CPHL_A] gi|289448729|ref|ZP_06438473.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis CPHL_A] gi|289763229|ref|ZP_06522607.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis GM 1503] gi|297635682|ref|ZP_06953462.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis KZN 4207] gi|297732680|ref|ZP_06961798.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis KZN R506] gi|298526521|ref|ZP_07013930.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis 94_M4241A] gi|306777357|ref|ZP_07415694.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu001] gi|306781261|ref|ZP_07419598.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu002] gi|306785902|ref|ZP_07424224.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu003] gi|306790256|ref|ZP_07428578.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu004] gi|306794751|ref|ZP_07433053.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu005] gi|306804836|ref|ZP_07441504.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu008] gi|306809029|ref|ZP_07445697.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu007] gi|306969129|ref|ZP_07481790.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu009] gi|307081184|ref|ZP_07490354.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu011] gi|313660012|ref|ZP_07816892.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis KZN V2475] gi|3261509|emb|CAA16136.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|31619824|emb|CAD96764.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (ALPHA CHAIN) NRDE (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R1F PROTEIN) [Mycobacterium bovis AF2122/97] gi|121494583|emb|CAL73064.1| Probable ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507056|gb|ABQ74865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis H37Ra] gi|224774542|dbj|BAH27348.1| ribonucleoside-diphosphate reductase subunit alpha [Mycobacterium bovis BCG str. Tokyo 172] gi|289421687|gb|EFD18888.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis CPHL_A] gi|289710735|gb|EFD74751.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis GM 1503] gi|298496315|gb|EFI31609.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis 94_M4241A] gi|308214249|gb|EFO73648.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu001] gi|308325904|gb|EFP14755.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu002] gi|308329426|gb|EFP18277.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu003] gi|308333271|gb|EFP22122.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu004] gi|308336926|gb|EFP25777.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu005] gi|308344609|gb|EFP33460.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu007] gi|308348557|gb|EFP37408.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu008] gi|308353283|gb|EFP42134.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu009] gi|308361068|gb|EFP49919.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis SUMu011] Length = 693 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 280/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 655 VNKAQIYAWRKGIKTLYYIR 674 >gi|222099545|ref|YP_002534113.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga neapolitana DSM 4359] gi|221571935|gb|ACM22747.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga neapolitana DSM 4359] Length = 836 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 163/700 (23%), Positives = 291/700 (41%), Gaps = 101/700 (14%) Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYFLHI-NGSRIEM-PQAFFMRVAMGLALKETEK 335 ++ L+ ++ D IL DRYF+ +G +E + RVA +A E Sbjct: 9 IMKLSTLIEKWIDVEPSRNAQTILKDRYFMRDLDGKYLETRWEDVARRVARVVATAELLN 68 Query: 336 ------------EKRAVEFYNLLSSFHFMCSTPTLFNS---------------------- 361 ++ F+ +L + F+ ++PTLFN+ Sbjct: 69 PSYKKGEKLDRIKEWEDTFFKILKARLFLPNSPTLFNAGLGVRYELLWKPIDQMTLEDYE 128 Query: 362 -----GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 LS+CF+ V D + IF A++E A++ K GG+G++++ +R G+ + G Sbjct: 129 EIYRTRNHLHMLSACFVVPVGDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAG 188 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRR 475 T+GK+ G + F+ V N V QG +R+GA+ L H D+EEF+D ++ + Sbjct: 189 THGKASGPVSFMHVFNSAISVVKQGYRRRGALMGILNIDHPDIEEFIDAKRENTGEAVLN 248 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY-ERQADRGEI 534 +++ + M + YE E + Sbjct: 249 FFNLSVG-----IPMDKKEIL-----------------------KLYEEDGELELSHPRS 280 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + +++ L+RK+ + +++G P + F N P ++S+N C EI Sbjct: 281 TIRKRVKIRELFRKIASNAWKSGDPGLAFLGEMNRYYPLYPHRKINSTNPCGEI----GL 336 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + CNLGSI++ + N D + L ++ AVR LD+VID+N I+K K+ R Sbjct: 337 SDYEACNLGSIDVAKFYNNGFVDLEALQELVQIAVRFLDDVIDVNVFPIDKITKAVKESR 396 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGF L+ L +PY S EA + A M FI+ HA AS EL +E+G + + S Sbjct: 397 RLGLGIMGFADLLYKLELPYDSQEARDFASNLMAFIALHAHRASYELGKEKGNFPLLEIS 456 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + E AM ++ ++ RN + IAPT +I+N Sbjct: 457 RY-----------RTEEGFVPFAMGTSNYDDEIREVMKMTREYRRNVALLTIAPTGSISN 505 Query: 775 ICGVSQSIDPSYQNLYVKSNMSGD-----FTVVNSFLVNELKQRDLWDEAMISDLKYH-- 827 I S ++P++ Y + D VN L +L D ++ ++ Sbjct: 506 IADTSSGLEPNFLLAYTRYMTKEDGTKEPLLYVNQVLREKL------DPEILRRIEKDLI 559 Query: 828 -DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885 GS+ +I +P+ +K++ A +IDP+ + Q+++D S + + + + Sbjct: 560 EKGSLKDIPDVPEKIKRVFVVALDIDPIDHLLMQDAFQRYVDNNISKTINMPQSATVDDV 619 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 +Y +A ++ R S + + Sbjct: 620 LNVYLEALRTNVRGITIYRDGSLQTQVLTKALKTPEAPKV 659 >gi|557567|gb|AAA64444.1| ribonucleotide reductase R1 subunit [Mycobacterium tuberculosis str. Erdman] Length = 723 Score = 311 bits (795), Expect = 5e-82, Method: Composition-based stats. Identities = 165/680 (24%), Positives = 277/680 (40%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 69 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 128 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 129 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 185 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R G I +S GVIP +K Sbjct: 186 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGGAIKNIENQSSGVIPIMK 245 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 246 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 305 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 306 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 362 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 363 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 420 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN-VIDINCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L + ++ ++ N+ A Sbjct: 421 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVRHQTHIKSVPSIEQGNNDSHA 475 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 476 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 535 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 536 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 595 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + V+ G ++ N+ Sbjct: 596 PPTGSISYINHSTSSIHPIVSKVEVRKEGKIGRVYYPAPYMTND---------------- 639 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 640 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 684 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 685 VNKAQIYAWRKGIKTLYYIR 704 >gi|300780545|ref|ZP_07090400.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium genitalium ATCC 33030] gi|300533531|gb|EFK54591.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium genitalium ATCC 33030] Length = 720 Score = 311 bits (795), Expect = 6e-82, Method: Composition-based stats. Identities = 170/720 (23%), Positives = 288/720 (40%), Gaps = 68/720 (9%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270 +Y + A L + ++ + YF E+ Sbjct: 20 DYHALNALLNLYDENGHIQFDKDREAANQFFLQHVNQNTVYFHDLEEKMNYLVENKYYEP 79 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVA 325 + + +D ++ + K F F + Y Y +G R E + RVA Sbjct: 80 DVIKAYDWDFVKSTFKRAYAFKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFED---RVA 136 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 M E+ A + + + F +TPT N+G +L SCFL + D++ I Sbjct: 137 MTALFLADGNEEIASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESIG 196 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ + L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R Sbjct: 197 RAINSSLQLSKRGGGVALLLSNIRESGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGAR 256 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +N LFSP Sbjct: 257 QGAGAVYLNAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP 316 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ +YG F + + ++ + I A ++ + + FE+G+P+I F Sbjct: 317 ---YDVERVYGVPFADISVTEKYDEMVEDPRIRKTKIKARQFFQTIAEIQFESGYPYILF 373 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQF 616 +D N R+ G ++ SNLC+EI N + + S NL + Sbjct: 374 EDHAN-RANPVKTGRINMSNLCSEILQVNSASVLNEDLTYDTIGHDISCNLGSLNIAMAM 432 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D D + T+ TA+R L V D + ++ ++ N AIGLG M L HI Y Sbjct: 433 DSDNFSRTVETAIRGLTAVADKTSIDSVPSVREGNDASHAIGLGQMNLHGYLGREHIEYG 492 Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLL 729 S E ++ + I + + AS ++A E+ ++ F+ S + G F P D Sbjct: 493 SEEGLDFTNAYFATIMYECLKASHKIAVEKGQRFAGFEDSEYASGEFFDRYNPADFQPKT 552 Query: 730 AEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 V++ S W++LK V G+ N A+ PT +I+ I + SI P Sbjct: 553 QRVKELFDGSSAQPPSAEEWEQLKADVARDGIYNRYLQAVPPTGSISYINNSTSSIHPIA 612 Query: 787 QNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + ++ G + NE + G Sbjct: 613 SKIEIRKEGKIGRVYYPAPHMDNE-----------------NAG--------------YF 641 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 A+EI +I++ + K++DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 642 KDAYEIGFEKIIDTYAEATKYVDQGLSLTLFFKDTVTTRDINRAQIYAWRKGIKTLYYIR 701 >gi|300930528|ref|ZP_07145924.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] gi|300461584|gb|EFK25077.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 187-1] Length = 701 Score = 311 bits (795), Expect = 6e-82, Method: Composition-based stats. Identities = 171/706 (24%), Positives = 286/706 (40%), Gaps = 60/706 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 AITWHALRISMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTRR 606 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + ++ ++ A+EI +I++ Sbjct: 607 VYY------------------------------PAPFMTNENLALYQDAYEIGAEKIIDT 636 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 637 YAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|262341078|ref|YP_003283933.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272415|gb|ACY40323.1| ribonucleoside-diphosphate reductase subunit alpha [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 570 Score = 311 bits (795), Expect = 6e-82, Method: Composition-based stats. Identities = 163/619 (26%), Positives = 252/619 (40%), Gaps = 94/619 (15%) Query: 302 YDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 + Y I G + E P + R+A A + + +F+N+ + STP + Sbjct: 24 NELYLTTIKGGYLLDGETPFEAYKRLAKNAAKILKKPKI-EEKFFNIFWKGWLIPSTPVM 82 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF + D +Y I+ E A+L+K+ GG D++ VR +G+ I Sbjct: 83 VNLGTEKGLPISCFSGRIGDSMYEIYRKNLEMAILSKHGGGTSYDFSLVRPIGSPIKNGT 142 Query: 419 -GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G S GVIPF+K + VA QG R+GAV YL H + EFL +R+ GD R+ H Sbjct: 143 LGSSDGVIPFIKSYDSAIVASKQGRTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCH 202 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 +++ I D FM+ V + Sbjct: 203 NVHQGVIISDSFMEEVLK------------------------------------------ 220 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSS 594 + + W L +TG P++ FKD N + +++ +H SNLC+EI L + Sbjct: 221 KNGKERSFWINTLKERVKTGEPYLFFKDNANKNLPENWEKNGLKIHHSNLCSEIMLPTDE 280 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 T VC L S+NL + + A AV N IE A + R Sbjct: 281 NHTLVCCLSSLNLYKYVEWKNTNTVFYAILFLDAVLQEFIDKGKNIQGIEDAVRFAEKSR 340 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 A+GLG +G+ S L IP+ S ++ + I + A+ LA+E G G+ Sbjct: 341 ALGLGALGWHSYLQSNMIPFISVQSEILTHNIFRKIQLESQKATKYLAKEYGESEWNIGT 400 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 G RN MA+AP + A Sbjct: 401 ------------------------------------------GRRNLTLMAMAPNRSSAK 418 Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + G +SQ ++P N+YV + G N +L L + + + GS Sbjct: 419 LAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKMLIEIGYNLPEVWEQIANEKGSCLG 478 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQA 892 + + ++ K + EI+ + LI AS RQK+IDQ QS+NL + K ++ ++ +A Sbjct: 479 LTALSEEQKNVFRCFKEINQLELIRQASIRQKYIDQGQSINLSFHQNTPAKYINKVHLEA 538 Query: 893 WLMGLKTTYYLRSRSATSV 911 W +GLK+ YY RS S Sbjct: 539 WKIGLKSLYYYRSESILRA 557 >gi|91778404|ref|YP_553612.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400] gi|91691064|gb|ABE34262.1| putative ribonucleotide reductase [Burkholderia xenovorans LB400] Length = 861 Score = 311 bits (795), Expect = 6e-82, Method: Composition-based stats. Identities = 148/632 (23%), Positives = 261/632 (41%), Gaps = 80/632 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 L +L ++Y + F RVA G+A E + +VE F + L Sbjct: 29 QFSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPPALRESVEALFVDNLRHGALG 84 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 85 AGRIMSAAGTGIAATLINCFVQPVGDAIQGVDEEGLPGIYVALLQAAETMRRGGGVGYNF 144 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA +H T+ + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 145 SAIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 204 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM+ V ++ W L E S + Sbjct: 205 AKHSKG----RWNNFNVSVGVTDEFMRAVEEDQPWQLVHRAEPSPA---------QRAAD 251 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 RQ + G + V+ + A +W +++ ++ P I F N + + V + ++N Sbjct: 252 DVRQREDG-LWVYSERPAREIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 310 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL FD+D LA RT VR LDNV Sbjct: 311 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQIKGRKPSFDWDGLAKRTRTQVRFLDNV 366 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + + R IG+G G L +L + Y S E + A + + A Sbjct: 367 LDVTLWPLPQQYEESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVGIAQLMRDEAY 426 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA+ F + + L + +++K+ ++ Sbjct: 427 RASVELARERGAFPLFDAARY-------------------LETGTFASRLPEDIKQAIRR 467 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y + ++ + + Sbjct: 468 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGSRE 516 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 E L G G++ R+PD +A E+ ++ + Q ++D + S Sbjct: 517 SFDVEDYAYRLYRELG--GDVNRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISK 570 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + + +Y AW GLK R Sbjct: 571 TVNVPADYPFEAFESLYLDAWKNGLKGLATYR 602 >gi|74313246|ref|YP_311665.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella sonnei Ss046] gi|187730558|ref|YP_001881573.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella boydii CDC 3083-94] gi|73856723|gb|AAZ89430.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Shigella sonnei Ss046] gi|187427550|gb|ACD06824.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella boydii CDC 3083-94] gi|320173469|gb|EFW48668.1| ribonucleotide-diphosphate reductase subunit alpha [Shigella dysenteriae CDC 74-1112] gi|323167151|gb|EFZ52869.1| ribonucleoside-diphosphate reductase, alpha subunit [Shigella sonnei 53G] Length = 714 Score = 311 bits (795), Expect = 6e-82, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI + + E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|5230835|gb|AAD41036.1|AF112535_3 ribonucleotide reductase alpha-chain [Corynebacterium glutamicum] gi|21325302|dbj|BAB99923.1| Ribonucleotide reductase alpha subunit [Corynebacterium glutamicum ATCC 13032] Length = 707 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 162/679 (23%), Positives = 272/679 (40%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +E ++ + + L + +LG Y Y L +G Sbjct: 54 EKIDYLVENKYYDPIVLDKYDFQFIKDLFKRAYGFKFRFQSFLGAYKYYTSYTLKTFDGR 113 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA A + + S F +TPT NSG + S Sbjct: 114 RYLERFEDRVCMVALTLA---DGDRALAENLVDEIMSGRFQPATPTFLNSGKAQRGEPVS 170 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 171 CFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKL 230 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 231 LEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 290 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + +N LFSP D+ +YGK F + ++ + I+A ++ + Sbjct: 291 ELAKRNDDMYLFSP---YDVERIYGKPFADVSITEHYDEMVDDDRIRKTKINARQFFQTL 347 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I ++D N G + SNLC+EI + E Sbjct: 348 AEIQFESGYPYIMYEDTVNA--SNPIEGRITHSNLCSEILQVSTPSEFNDDLTYAEVGED 405 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D TI TA+R L V + + ++ +K N AI Sbjct: 406 ISCNLGSLNVAMAM-----DSPNFEKTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAHAI 460 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M H+ Y S EA++ + + + + AS ++A ER + +F+ S Sbjct: 461 GLGQMNLHGYFGREHMHYGSEEALDFTNAYFAAVLYQCLRASNKIATERGERFKNFENSK 520 Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + D + E+ + ++ + W LK V G+ N N A+ Sbjct: 521 YATGEYFDDFDANDFAPKSDKVKELFAKSNIHTPTVEDWAALKADVMEHGLFNRNLQAVP 580 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G + N+ Sbjct: 581 PTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND----------------- 623 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + A+EI +I++ + K++DQ SL L+ + + + + Sbjct: 624 --------------NLEYFEDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDI 669 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 670 NRAQIYAWRKGIKTLYYIR 688 >gi|218690803|ref|YP_002399015.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli ED1a] gi|218428367|emb|CAR09296.2| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli ED1a] Length = 714 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 179/732 (24%), Positives = 297/732 (40%), Gaps = 73/732 (9%) Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254 ++ L ++ +Y + A + L + K +A M + Sbjct: 5 TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 + EG + ++ L +LG Y Y L +G R Sbjct: 62 RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + F RV M E A + + + S F +TPT N G + +L SCF Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551 +NA LFSP D+ +YGK F A + E + ++A ++++ Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLAE 356 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + S Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + + D A T+ TAVR L V D+ + H++ + N AIGLG M Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNL 474 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534 Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 535 SQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594 Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ +G F+ N Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 684 WRKGIKTLYYIR 695 >gi|120403036|ref|YP_952865.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium vanbaalenii PYR-1] gi|119955854|gb|ABM12859.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium vanbaalenii PYR-1] Length = 722 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 165/680 (24%), Positives = 286/680 (42%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +++ R + + + L + ++ ++G Y Y L +G Sbjct: 68 DEKLDYLVQKEYYEREVLDQYSRNFVKELLDRAYAKKFRFPTFVGAFKYYTSYTLKTFDG 127 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + + F +TPT NSG + + Sbjct: 128 KRYLERFEDRVVMVALTLASGD---TTLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEPV 184 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 185 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 244 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 245 LLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 304 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 305 FELAKKNEDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 361 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----------- 597 + + FE+G+P+I ++D N +P G + SNLC+EI S+ E Sbjct: 362 LAELQFESGYPYIMYEDTVNRANPI--DGKITHSNLCSEILQVSTPSEFNDDLSYKKIGK 419 Query: 598 -AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 420 DISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHA 474 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E V+ + + +HA+ AS +A ERG + F+ S Sbjct: 475 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYTVLYHALRASNRIAIERGTAFKGFEKS 534 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W +LK+ V+ G+ N N A+ Sbjct: 535 KYASGEFFDKYTEQVWEPKTDKVRQLFTDAGIRIPNQDDWKQLKESVQQHGIYNQNLQAV 594 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N Sbjct: 595 PPTGSISYINHSTSSIHPIASKVEIRKEGKIGRVYYPAPYMTN----------------- 637 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + + A+EI +I++ + + +DQ SL L+ + + ++ Sbjct: 638 --------------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRE 683 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 684 VNKAQIYAWRKGIKTLYYIR 703 >gi|148259205|ref|YP_001233332.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidiphilium cryptum JF-5] gi|146400886|gb|ABQ29413.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidiphilium cryptum JF-5] Length = 761 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 153/639 (23%), Positives = 255/639 (39%), Gaps = 85/639 (13%) Query: 295 YLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + QI +Y L G ++ + + RVA LA E E FY L F F+ Sbjct: 20 PISAQIWDAKYRLKDEAGEPVDRTVEDTWRRVARALAETEREPSSWEAPFYEALRDFRFV 79 Query: 353 CSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + + +GT L +CF+ + DDL IF L+E A+ + GG+G D++ +R Sbjct: 80 PAGRIISGAGTARRVTLFNCFVMGDIEDDLGRIFAHLREAALTMQQGGGIGYDFSSIRPK 139 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + G + G + F+ V + + G R+GA+ A + H D+E F+ ++ Sbjct: 140 GAAVRGVGADASGPLSFMDVWDSMCRTIMSAGARRGAMMATMRCDHPDIEAFIAAKR--- 196 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + R + N + + D FM+ V +A W L Sbjct: 197 -EPGRLRNFNLSVLVTDDFMRAVEADAAWDLVF--------------------------- 228 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 E KV+R + A ALW + ++ P + F D N R+ + +H++N C E L Sbjct: 229 --EGKVYRTLQARALWEAITRATYDYAEPGVIFIDRINKRNNLYYCETIHATNPCGEQPL 286 Query: 591 NSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 C LGSINL + D +LA + AVR+LD+ ID + +E Sbjct: 287 PPY----GACLLGSINLARLVRDPFGSGARIDEAELAELVTIAVRMLDDTIDASGFPLEA 342 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 ++ R +GLG+ G AL + + Y +PEA A + I A AS LA E+ Sbjct: 343 QREEAVAKRRVGLGMTGLADALMMCGLRYGTPEAAARAGDWARQIERAAYLASAALAAEK 402 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 GA+ + + + G + L D ++ + G+RN+ + Sbjct: 403 GAFPLYDAAQYLAGE-------------------TIAGLDED-VRAAIAAHGIRNALLTS 442 Query: 766 IAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 +APT TI+ + VS ++P + Y + L + +R+ +E L Sbjct: 443 VAPTGTISLLSDNVSSGVEPVFALAYTRKV-----------LQRDGSRRE--EEVTDYAL 489 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + G +P TA E+ P + + Q+ +D A S + + + + Sbjct: 490 RLFRAKFGEGAPLPAH----FVTAQELTPAEHVRMQAAVQRHVDSAISKTVNVPEDIGFE 545 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +Y A+ G K R + T D K Sbjct: 546 AFQEVYLDAYRSGCKGCTTYRPNAVTGSVLEVAPPADAK 584 >gi|299537050|ref|ZP_07050353.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus fusiformis ZC1] gi|298727291|gb|EFI67863.1| ribonucleoside-diphosphate reductase alpha subunit [Lysinibacillus fusiformis ZC1] Length = 697 Score = 310 bits (794), Expect = 6e-82, Method: Composition-based stats. Identities = 167/694 (24%), Positives = 303/694 (43%), Gaps = 73/694 (10%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQI- 300 + ++ Y I V ++ +D +++ ++ K D+ F + Sbjct: 35 LEYVNVRLRYFIDIEEKIRYLVDEGYYEKAFIDMYEMEFIKKLYKKAYDYNFRFPSFMSA 94 Query: 301 --LYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 YD Y + +E + + +A+ LA T +R+VE + +TP Sbjct: 95 SKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTALAERSVE----AMMEAYQPATP 150 Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T NSG + +L SCF ++ D + I + L++ GG+G + T +R LG I Sbjct: 151 TALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIK 210 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 ++ GVIP K+ ++ NQ G+R G+ YL +H D+E F+ +K DD+ R Sbjct: 211 EILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIR 270 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533 ++T IP +F + + ++ LFSP D+ YGK + Y D + Sbjct: 271 LATLSTGIIIPSIFFELMKRDKDIVLFSP---YDIFKEYGKRMSEISISDMYYELLDNPK 327 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE------ 587 I+ ++++A L+ ++ FE+G+P+ F D N P +++G V SNLCTE Sbjct: 328 IRKIKRLNARKLYTEVKKAQFESGYPFEIFDDNVNKVHPLKNIGRVKMSNLCTEILQVQE 387 Query: 588 ------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640 + CNLGSI++ A + + TA+ +L NV + + Sbjct: 388 TSIITDQDQPNDYGLDVSCNLGSIDIHAASKV-----KDFGTLVDTAMHLLTNVSQMTHI 442 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + K+N ++GLG M L I Y S E+++ D ME ++++++ +S+E Sbjct: 443 KNVPSVAKANQLMHSVGLGCMNLHGHLVTEGILYGSRESIDFMDHFMEAMNYYSLKSSME 502 Query: 701 LAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRV 753 +A+E+ + F+ S + G + I E + + + W+ LK+ V Sbjct: 503 MAKEKAATFYRFEDSDYASGSYFDQYINKAEEELSPVVLKALGNIPIITNKMWETLKQDV 562 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+ +S +AIAPT +I+ I + SI P + + V+ L N+ Sbjct: 563 MQYGLFHSYRLAIAPTGSISYIRSCTASIAPCTERVEVRDYADSRTIYPMPHLTNDNSH- 621 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 ++ A++++P LI+ + QK +DQ S+ Sbjct: 622 ------------------------------LYVEAYDVNPYDLIDLYAASQKHVDQGISM 651 Query: 874 NLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY+ + + ++L +Y AW+ G+K+ YY+R R Sbjct: 652 TLYVTDNWTTEQLAKVYIYAWIKGIKSVYYVRQR 685 >gi|188533085|ref|YP_001906882.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia tasmaniensis Et1/99] gi|188028127|emb|CAO95984.1| Ribonucleoside-diphosphate reductase 2, alpha subunit [Erwinia tasmaniensis Et1/99] Length = 693 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 166/668 (24%), Positives = 275/668 (41%), Gaps = 60/668 (8%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMP 317 + EG + + + L + R +LG Y Y L +G R Sbjct: 45 LVAEGYYEADVLNAYPFEFVCSLFAEATARRFRFQTFLGAWKFYTSYTLKTFDGKRY--L 102 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376 + F RV M + A+ + + S F +TPT N G + +L SCFL + Sbjct: 103 EGFTERVCMVALTLAKGDQPLALALTDEILSGRFQPATPTFLNCGKQQRGELVSCFLLRI 162 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 163 EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFS 222 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N Sbjct: 223 YANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDN 282 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFE 555 LFSP D+ +YG F + + + ++ R I+ ++ + + FE Sbjct: 283 QQMALFSP---YDVERIYGLPFADISISEKYHEMLNDARIRRTFINPREFFQTLAEIQFE 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608 +G+P+I F+D N +P G ++ SNLC+EI +S E S NL Sbjct: 340 SGYPYIMFEDTVNRANPVH--GRINMSNLCSEILQVNSPTEYHDDLSYRRIGKDISCNLG 397 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + + D A T+ AVR L V D + H++ ++ N AIGLG M L Sbjct: 398 SLNIAHAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYL 457 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI 726 I Y S ++ + +++HA+ S +LA+ER +S F S + G + + Sbjct: 458 AREGIQYGSEAGLDFTNIYFYTVTYHALRTSNQLARERSTTFSGFAQSRYASGEYFNPYL 517 Query: 727 GLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + R + +R W LK V G+ N N AI PT +I+ I Sbjct: 518 EQSWQPRTSQVAALFANAGIAIPTRQQWQTLKDAVMQYGLYNQNLQAIPPTGSISYINHA 577 Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ +G F+ N+ Sbjct: 578 TSSIHPIVSRIEIRKEGKTGRVYYPAPFMNND---------------------------- 609 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMG 896 + + A++I P +I++ + + +DQ SL L+ + + + ++ AW G Sbjct: 610 ---NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKG 666 Query: 897 LKTTYYLR 904 +KT YY+R Sbjct: 667 IKTLYYIR 674 >gi|300815922|ref|ZP_07096146.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] gi|300531851|gb|EFK52913.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 107-1] Length = 701 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|191171419|ref|ZP_03032968.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] gi|190908353|gb|EDV67943.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli F11] Length = 714 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 179/732 (24%), Positives = 297/732 (40%), Gaps = 73/732 (9%) Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254 ++ L ++ +Y + A + L + K +A M + Sbjct: 5 TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 + EG + ++ L +LG Y Y L +G R Sbjct: 62 RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + F RV M E A + + + S F +TPT N G + +L SCF Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551 +NA LFSP D+ +YGK F A + E + ++A ++++ Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLAE 356 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + S Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + + D A T+ TAVR L V D+ + H++ + N AIGLG M Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMNL 474 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534 Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 535 SQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594 Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ +G F+ N Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 684 WRKGIKTLYYIR 695 >gi|301300445|ref|ZP_07206645.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851942|gb|EFK79626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 723 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 286/712 (40%), Gaps = 76/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + K + + E I+ + L + LK E Sbjct: 34 KEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y +Y L + + + + F RVA EK A+E + L Sbjct: 92 DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150 Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + + + Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 RG GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL +K Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD + + V +N LF P V ++ +I E Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 A+ K + I A L ++ + E+G+P++ D N G + SNLC+E Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386 Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I + +E V S NL + N ++ R L V D + Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + N IGLG MG + L I Y SPEA+E +++ + AS Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506 Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750 ++A+ER + +F+ S + G + + + E+ D + + ++ W LK Sbjct: 507 KIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809 + V G+ + N +A+AP +I+ I + S+ P + + G +L N Sbjct: 565 ENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + +A++ D +I++ + Q+ +DQ Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653 Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + L + A G+K+ YY+R+ Sbjct: 654 GMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705 >gi|42522732|ref|NP_968112.1| ribonucleotide-diphosphate reductase alpha subunit [Bdellovibrio bacteriovorus HD100] gi|81617878|sp|Q6MNP6|NRDJ_BDEBA RecName: Full=Vitamin B12-dependent ribonucleotide reductase; AltName: Full=Ribonucleoside-diphosphate reductase nrdJ gi|39573928|emb|CAE79105.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio bacteriovorus HD100] Length = 764 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 133/604 (22%), Positives = 246/604 (40%), Gaps = 42/604 (6%) Query: 363 TRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 PQ S+CF+ +V D + IF + A L KY G G++++ +R G+ GKS Sbjct: 164 YERPQCSACFIQSVDDSIESIFDLAKTEAKLFKYGSGTGSNFSKIRSK-YEATGSGGKSS 222 Query: 423 GVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G+I FL+V + A A+ G R+ A ++ H +V +F+D + + ++ H + Sbjct: 223 GLISFLEVLDKGAGAIKSGGTTRRAAKMVVVDIDHPEVLDFIDWKMR---EEQKAHLLIA 279 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A D + + + + D + K E E + R KV R+I Sbjct: 280 AGLSADF---EGEAYRTVSGQNANNSVRVSDAFMKAVEQ--ERPWKLKARLTGKVLREIP 334 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A +W ++ + P I F D N ++HSSN C+E + + CN Sbjct: 335 AGEVWNRITRAAWMCADPGIQFHDTINKWHTCPETDIIHSSNPCSEYMF----LDDSACN 390 Query: 602 LGSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L SINL+ FD++ T RT + ++D + + ++ +++H +R +GLG Sbjct: 391 LASINLVKFLNDTGDFDFESFIHTARTLFVAQEILVDYSSYPTQRVAQNSHDYRPLGLGF 450 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG---SLWD 717 S L + Y S E A +S A S E+A+ +G ++ ++ S+ Sbjct: 451 ANLGSLLMRKGVAYDSDEGRAWAGALTSLMSGVAYLTSSEMARAKGPFAGYRKNSKSMLK 510 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 ++ +A +++ R W + + G RN+ IAPT TI + Sbjct: 511 VMKMHERALNQVAWKMLPAGIDKAVRNLWKGVLYNGEKYGYRNAQATVIAPTGTIGLLMD 570 Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833 + I+P + + + K G+ +VN + L +++ + LKY + S+ Sbjct: 571 CDTTGIEPDFSLIKFKKLVGGGEIQIVNQSVDAALASLQYFEDERQAILKYVEENNSVVG 630 Query: 834 IERIPDDLKKIHATAFEI------DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 ++ + + TA + P ++ + Q +I A S + + + + + Sbjct: 631 APQMHPEDLPVFDTATAMPGQRVLSPESHVKMMAAVQPFISGAISKTVNMPSTATEEDIS 690 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 IY AW +G+K R S S + + + +G+P+ Sbjct: 691 RIYFLAWKLGVKAVAVYRDGSKQS-------------QPLNLKEKPKVVEEVGVPNFTMK 737 Query: 947 DTEC 950 EC Sbjct: 738 CPEC 741 >gi|117624911|ref|YP_853851.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli APEC O1] gi|115514035|gb|ABJ02110.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli APEC O1] gi|315284935|gb|EFU44380.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 110-3] Length = 701 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 171/673 (25%), Positives = 281/673 (41%), Gaps = 60/673 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 + + EG + ++ L +LG Y Y L +G Sbjct: 48 QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 R + F RV M E A + + + S F +TPT N G + +L SC Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550 +NA LFSP D+ +YGK F A + + E + ++A ++++ Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISEHYDELVADERIRKKYLNARDFFQRLA 342 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + + D A T+ TAVR L V D+ + ++ + N AIGLG M Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 460 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520 Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 521 FSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580 Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ +G F+ N Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 670 AWRKGIKTLYYIR 682 >gi|193071023|ref|ZP_03051951.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|218696272|ref|YP_002403939.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 55989] gi|192955681|gb|EDV86156.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli E110019] gi|218353004|emb|CAU98820.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli 55989] Length = 714 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|281179682|dbj|BAI56012.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia coli SE15] Length = 714 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 287/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISERYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|324005771|gb|EGB74990.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 57-2] Length = 701 Score = 310 bits (794), Expect = 7e-82, Method: Composition-based stats. Identities = 171/673 (25%), Positives = 281/673 (41%), Gaps = 60/673 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 + + EG + ++ L +LG Y Y L +G Sbjct: 48 QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 R + F RV M E A + + + S F +TPT N G + +L SC Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550 +NA LFSP D+ +YGK F A + + E + ++A ++++ Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISEHYDELVADERIRKKYLNARDFFQRLA 342 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + + D A T+ TAVR L V D+ + ++ + N AIGLG M Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 460 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520 Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 521 FSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580 Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ +G F+ N Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 670 AWRKGIKTLYYIR 682 >gi|254000336|ref|YP_003052399.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. SIP3-4] gi|313202290|ref|YP_004040948.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. MP688] gi|253987015|gb|ACT51872.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. SIP3-4] gi|312441606|gb|ADQ85712.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylovorus sp. MP688] Length = 714 Score = 310 bits (794), Expect = 8e-82, Method: Composition-based stats. Identities = 142/705 (20%), Positives = 267/705 (37%), Gaps = 66/705 (9%) Query: 293 FEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKET---EKEKRAVEFYNLLS 347 + + L I +Y L + RVA LA E ++ F L Sbjct: 17 MQPVSLDIWDKKYRLKTKQGDHIDADMDDTYKRVARALADAEETDAKRSFWYERFLWALR 76 Query: 348 SFHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGN 402 + N+G + + +C ++ + D + GI + E + K G+G Sbjct: 77 RGAI-PAGRITSNAGAQEHKPATSTINCTVSGIIEDSMDGILEKVHEAGLTLKAGCGIGY 135 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 +++ +R GA + G + G + F+ + + V+ G R+GA A + H DV +F Sbjct: 136 EFSTLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPDVTDF 195 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP-------DEVSDLHDLYG 515 + ++ + R N + I FM+ V +A W L P + +L D Sbjct: 196 IKAKR----EAGRLRQFNLSTLITKEFMEAVKADAEWKLAFPVTEKEANQDSLNLEDPTQ 251 Query: 516 KEFEIAYENYERQADRGEIKV----FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 + + + KV ++ I A LW +++ ++ P D N + Sbjct: 252 VVWREWPVKNKYLTRESDGKVACRVYKTIKAQRLWDVIMSSTYDFAEPGFILIDRVNEMN 311 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIR 626 + ++N C E L C LGS+NL FD+++ + Sbjct: 312 NNWFCENIRATNPCGEQPLPPY----GACLLGSVNLTKFVREPFTDKAWFDWEEYREVVA 367 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 T R+LDNV+++N + + + R G+G +G S L +L + Y ++ +E Sbjct: 368 TFTRMLDNVVEVNGLPLPQQQAEIMRKRRHGMGYLGLGSTLTMLKMKYGDDASLTFTEEV 427 Query: 687 MEFISFHAISASVELAQERGAYSSFKGS-------LWDQGVFPIDSIGLLAEVRDELAMN 739 + ++ VELA+E+G L + D I L +V+ ++ M Sbjct: 428 TKIMAEVGWQVGVELAEEKGPAPIMDEEFVVTADLLAKRPEMVKDGIKLGDKVKGKVLMG 487 Query: 740 RTSRLP---WDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794 SR D+L+K++ G+R ++ +IAPT TI+ S I+PS+ + Y ++ Sbjct: 488 LYSRYMQQFPDKLRKQIAKNGVRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYARNV 547 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD-LKKIHATAFEIDP 853 + ++ D++ +++ + + S P++ L + + I Sbjct: 548 I--------REGKKSKEKVDVFSYELLAYRELINASAMPFSDKPEEQLPEYFMDSSTISA 599 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT--- 909 ++ + QKWID + S + + + IY A+ GLK R Sbjct: 600 KAHVDIQAAAQKWIDSSISKTINVPTDYDFGDFKDIYLYAYEKGLKGCTTFRFNPEAFQG 659 Query: 910 ------SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 +E +T K + V V + I S+ Sbjct: 660 VLVTEKDLENTTYKFTLDDGSVVEVKGNEEIEYDGEIHSAANLYD 704 >gi|144575329|gb|AAZ53595.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma hyopneumoniae 7448] Length = 720 Score = 310 bits (794), Expect = 8e-82, Method: Composition-based stats. Identities = 170/737 (23%), Positives = 297/737 (40%), Gaps = 99/737 (13%) Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + E ++ + +L L F ++G Y Y Sbjct: 54 FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 113 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L N + + + F RV + ++A + + F +TPT N+G + Sbjct: 114 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 172 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + SC+L V D++ I A+ + L+K GG+ + +R GA I ++ GV Sbjct: 173 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 232 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D+ NQ G+R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 233 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 292 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542 IP++ + N LFS V D+ +Y K F ENY + EIK ISA Sbjct: 293 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQMLANPEIKKTF-ISA 348 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597 L++ + + FE+G+P+I F+D N H V SNLC+EIT S+ Sbjct: 349 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSRFLPDLS 406 Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGS+N+ + D++++ A+ V+ D++ +K N Sbjct: 407 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 463 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 + + AIGLG M L I Y S EA++ + ++F A AS +LA++ G +S Sbjct: 464 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 523 Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759 F+ + + G + + E+ + + ++ W L +++K G+ Sbjct: 524 FEKTKFASGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIA 583 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS+ MAIAPT +I+ + + S+ P + ++ V S+ Sbjct: 584 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 629 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ K + A+E+ P+ +I S QK +DQA S+ L++ Sbjct: 630 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 673 Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + + + L+ Y A+ K+ YY+R R Sbjct: 674 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 702 Query: 938 LGIPSSCTSDTECEVCQ 954 + + C+ CQ Sbjct: 703 QDVLEDSENYETCQSCQ 719 >gi|90407599|ref|ZP_01215780.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas sp. CNPT3] gi|90311302|gb|EAS39406.1| ribonucleoside-diphosphate reductase, alpha subunit [Psychromonas sp. CNPT3] Length = 557 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 157/598 (26%), Positives = 257/598 (42%), Gaps = 118/598 (19%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E + +FY + + + S+P N G SCF +++ DD+ I E M++K Sbjct: 41 EGFSDKFYGYMEAGFYSLSSPVWSNFGKDSGLPVSCFGSSITDDIGNILFTEAEVGMMSK 100 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG + +R GA I NG S G F+++ V+QG R+G AYL Sbjct: 101 LGGGTSAYFGHLRHRGATIKN-NGVSSGAPHFMQLFETMVDVVSQGSVRRGRFAAYLPIE 159 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D EFLD+ + ++ + D +++++ Sbjct: 160 HKDANEFLDIG----SEGNVIQNLTHGITVTDAWLQKMI--------------------- 194 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS---P 572 E +++ LW K++ E G+P+I F D N ++ Sbjct: 195 -----------------EGDKEKRV----LWAKVIQRRNEMGYPYILFSDNANNQTVDTY 233 Query: 573 QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 ++H +++SNLCTEI L + + + VC L SINLL + D + T + L Sbjct: 234 KKHDLKINASNLCTEIMLPAHDKWSFVCVLSSINLLHYEKWKDTD------AVETLIYFL 287 Query: 633 DNVIDINCHTIEKAKKSN------------------HTHRAIGLGLMGFQSALHLLHIPY 674 D V+ +E+ + SN ++RA+G+G++G+ S L +P+ Sbjct: 288 DAVVTEFLDKLEEYRDSNERADQLVFLFMEKAYNFCKSNRALGMGVLGWHSLLQQEMLPW 347 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 +A ++ E + I + AS LA + G S +G Sbjct: 348 EGRDAAKLNLEIFKLIKQKSYQASASLADKFGEPSILEG--------------------- 386 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKS 793 G RN+ AIAPT + A I G VSQ I+P + N YVK Sbjct: 387 ---------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNCYVKD 425 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 T+ N FL L+++ + + D++ HDGS+ +++ + ++ KK+ T EID Sbjct: 426 ISKIKTTIKNPFLEKLLEEKGFNTKQVWLDIRDHDGSVQHLDFLTEEEKKVFKTFPEIDQ 485 Query: 854 MWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 M +I+ AS RQ +IDQ QSLNL + + K ++ +Y AW MG+K+ YY S +A Sbjct: 486 MSIIDQASTRQTYIDQGQSLNLMIHPDTPVKDINQLYLSAWKMGIKSLYYQHSMNAAQ 543 >gi|315502612|ref|YP_004081499.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora sp. L5] gi|315409231|gb|ADU07348.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora sp. L5] Length = 964 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 121/619 (19%), Positives = 223/619 (36%), Gaps = 28/619 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E A E +L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 116 GYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILD 175 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + + G G + + +R + G + G + F++ A+ +A + G R Sbjct: 176 WYKEEGRIFQGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF+ + D R D + + V Sbjct: 235 RAAKMVILDVDHPDIEEFVATKAREEDKIRALRDAGFDMDLGGADIVSVQYQNANNSVRV 294 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + G F++ R + + I A L+ + +E P + + Sbjct: 295 SDEFMTAVENGGGFDLR--------GRLDGQTIETIDAKKLFHTISQAAWECADPGLQYD 346 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 D N G + +SN C+E + + CNL S+NL+ + F+ +K Sbjct: 347 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVK 402 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I EK ++ +R +G+G + L +PY S + E++ Sbjct: 403 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGREVS 462 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 ++ A S ELA G Y + + ++ A+ Sbjct: 463 AAITSLMTGTAYRRSAELAGIVGPYDGYARNAEPHKRVMRKHAAANDAIKPTGTVATAVQ 522 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 R + W K G RNS +APT TI + + ++P + + K G Sbjct: 523 REATKQWTLGNKLGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 582 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L+ +E + + + G + + + + + A I Sbjct: 583 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 642 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q +I A S + + E + + ++ IY + W +GLK R Sbjct: 643 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 702 Query: 912 EKSTLKGVDGKLNAVPVTD 930 S K Sbjct: 703 PLSAAKPNKATAETQAPAA 721 >gi|72162548|ref|YP_290205.1| vitamin B12-dependent ribonucleotide reductase [Thermobifida fusca YX] gi|71916280|gb|AAZ56182.1| ribonucleotide reductase large subunit [Thermobifida fusca YX] Length = 934 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 126/623 (20%), Positives = 228/623 (36%), Gaps = 66/623 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFG 385 G + + E E L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 112 GYFASDEDAEIFDHELKYALVHQMFSFNSPVWFNVGTSSKAQVSACFILSVDDTMESILD 171 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 172 WYKEEGLIFKGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 230 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+EEF++ + R + + N + + Sbjct: 231 RAAKMVVLDVDHPDIEEFIECKAREERKIRVLRDAGFDVDLGGADIISVQYQNANNSVRV 290 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V + + R +V K+ A L Sbjct: 291 SDKFMRAVENDEDF---------------------------DLIARTTGEVISKVRARDL 323 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +RKM +E P I + D N G + +SN C+E + + CNL SI Sbjct: 324 FRKMAQAAWECADPGIQYDDTINDWHTTPESGRITASNPCSEYVH----LDNSSCNLASI 379 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL+ + F ++ + +D I EK ++ +R +G+G Sbjct: 380 NLMKFLDEDGSFRVEEFERLTELVITAMDISICFADFPTEKIAETTRAYRQLGIGYTNLG 439 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L Y S +A ++ A S ELA GAY + + Sbjct: 440 ALLMATGHAYDSDGGRSVAAAITSLMTAAAYRRSAELAGVVGAYEGYAKNAEAHKRVMRK 499 Query: 725 SIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 +R E ++ + W E + + G RN+ +APT TI+ + + Sbjct: 500 HAAANDALRPVGQLEKPIHDAATRAWKECLELGERHGWRNAQASLLAPTGTISFMLDCDT 559 Query: 780 QSIDPSYQNLYVKS-NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836 I+P + + +K G +VN + L+ ++ + + + Y G + + Sbjct: 560 TGIEPDFSLVKIKKLVGGGSMKIVNQGIPRALRTLGYNEDQIQAIVDYVAEHGHVVDAPE 619 Query: 837 IPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892 + + ++ A I PM +E + Q ++ A S + L E + + + +Y + Sbjct: 620 LRPEHYEVFDCATGKRYIRPMGHVEMMAAVQPFLSGAISKTVNLPEEATVEDFERLYFEG 679 Query: 893 WLMGLKTTYYLRSRSATSVEKST 915 W GLK R ST Sbjct: 680 WKKGLKALAVYRDNCKVGQPLST 702 >gi|225021559|ref|ZP_03710751.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii ATCC 33806] gi|224945550|gb|EEG26759.1| hypothetical protein CORMATOL_01580 [Corynebacterium matruchotii ATCC 33806] Length = 719 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 168/670 (25%), Positives = 279/670 (41%), Gaps = 64/670 (9%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EM 316 +E + + L + +LG Y Y L +G+R E Sbjct: 71 LVENKYYDPEVLARYDFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLER 130 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375 + RV M + A + + + F +TPT N G + SCFL Sbjct: 131 FED---RVCMVALGLADGDTELARHLVDEIMTGRFQPATPTFLNMGKAQRGEPVSCFLLR 187 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ D+ Sbjct: 188 IEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSF 247 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 248 SYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 307 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTML 553 N+ LFSP +V +YGK F E+Y+ + I+ +KI+A ++ + + Sbjct: 308 NSDMYLFSPYDVQ---RVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQ 363 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSIN 606 FE+G+P+I F+D N +P G V+ SNLC+EI +S S N Sbjct: 364 FESGYPYIMFEDVVNRANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCN 421 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 L + D A T+ TA+R L V + + H++ +K N AIGLG M Sbjct: 422 LGSLNIAMAMDSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHG 481 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF--- 721 L I Y S EA++ + + + + AS +LA+ER ++ F+ S + G + Sbjct: 482 YLGRERIHYGSEEALDFTNAYFAAVLYQCLRASNKLARERGQSFGGFEDSEYASGAYFDR 541 Query: 722 --PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 P D + A+V++ + + W+ LK V T G+ N N A+ PT +I+ I Sbjct: 542 FSPADFVPKTAKVQELFDASSITVPTAAEWEALKSDVMTHGLYNRNLQAVPPTGSISYIN 601 Query: 777 GVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + SI P + ++ G + N Sbjct: 602 NSTSSIHPIASRIEIRKEGKIGRVYYPAPHMDNT-------------------------- 635 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894 + A+EI +I++ + K++DQ SL L+ + + + ++ AW Sbjct: 636 -----NLEYFQDAYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWR 690 Query: 895 MGLKTTYYLR 904 G+KT YY+R Sbjct: 691 KGIKTLYYIR 700 >gi|218555223|ref|YP_002388136.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI1] gi|218361991|emb|CAQ99597.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli IAI1] Length = 714 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFHTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|121602719|ref|YP_988675.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella bacilliformis KC583] gi|120614896|gb|ABM45497.1| ribonucleoside-diphosphate reductase, alpha subunit [Bartonella bacilliformis KC583] Length = 716 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 173/685 (25%), Positives = 286/685 (41%), Gaps = 64/685 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E IEEG + L E + L + +LG Y Y L +G Sbjct: 62 KEKINYLIEEGYYEKALFELYDFSFIKRLFKRAYAFKFRFPTFLGAFKYYTSYTLKTFDG 121 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 +R E + RV + + A + + + F +TPT N+G + +L Sbjct: 122 TRYLERYED---RVCLVALYLAQGNKDFAESCVDEIMTGRFQPATPTFLNAGKKQRGELV 178 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GV+P +K Sbjct: 179 SCFLLRVEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIKQIENQSSGVLPVMK 238 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ Sbjct: 239 LLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVVIPDIT 298 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRK 548 + N LFSP D+ + GK F ++ K+ +KISA ++ Sbjct: 299 FELARNNEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNPKIRKKKISARVFFQT 355 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------ 602 + + FE+G+P+I F+D N +P G ++ SNLC+EI + + E Sbjct: 356 LAEIQFESGYPYILFEDTANRANPV--AGRINMSNLCSEILQINEASELETDLGYRTVGS 413 Query: 603 -GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + D T+ TAVR L V D+ N + K N AIGLG Sbjct: 414 DISCNLGSMNIAKAMDSSDFGRTVETAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQG 719 M L I Y SPEA++ + +++HA+ AS +A+E + ++ F+ S + G Sbjct: 474 MNLHGFLAREKIYYGSPEAIDFTNIYFYTVTYHALRASNLIARERQEKFAGFEKSAYADG 533 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I + + L +R W +LK+ + G+ N N A+ PT + Sbjct: 534 CFFEKYIKREWKPQFLLVQEIFARNNILIPTQGDWKKLKELIAKYGLYNRNLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G ++ N Sbjct: 594 ISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT--------------------- 632 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + A+EI P +I++ + + +DQ SL L+ + + + ++ Sbjct: 633 ----------NLNFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINRAQ 682 Query: 890 RQAWLMGLKTTYY--LRSRSATSVE 912 AW G+K+ YY LR ++ + E Sbjct: 683 IYAWKKGIKSIYYIRLRQKALSGTE 707 >gi|300990602|ref|ZP_07179252.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] gi|300305719|gb|EFJ60239.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 200-1] Length = 701 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 172/673 (25%), Positives = 281/673 (41%), Gaps = 60/673 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 + + EG + ++ L +LG Y Y L +G Sbjct: 48 QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 R + F RV M E A + + + S F +TPT N G + +L SC Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550 +NA LFSP D+ +YGK F A + E + ++A ++++ Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLA 342 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + + D A T+ TAVR L V D+ + H++ + N AIGLG M Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMN 460 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520 Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 521 FSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580 Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ +G F+ N Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 670 AWRKGIKTLYYIR 682 >gi|300214874|gb|ADJ79290.1| Ribonucleoside-diphosphate reductase [Lactobacillus salivarius CECT 5713] Length = 723 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 286/712 (40%), Gaps = 76/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + K + + E I+ + L + LK E Sbjct: 34 KEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y +Y L + + + + F RVA EK A+E + L Sbjct: 92 DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150 Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + + + Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 RG GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL +K Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD + + V +N LF P V ++ +I E Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 A+ K + I A L ++ + E+G+P++ D N G + SNLC+E Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386 Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I + +E V S NL + N ++ R L V D + Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + N IGLG MG + L I Y SPEA+E +++ + AS Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLARNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506 Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750 ++A+ER + +F+ S + G + + + E+ D + + ++ W LK Sbjct: 507 KIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809 + V G+ + N +A+AP +I+ I + S+ P + + G +L N Sbjct: 565 ENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + +A++ D +I++ + Q+ +DQ Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653 Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + L + A G+K+ YY+R+ Sbjct: 654 GMSLTLFMRSTIPTGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705 >gi|204929412|ref|ZP_03220486.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321131|gb|EDZ06331.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 714 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 176/680 (25%), Positives = 286/680 (42%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLIREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +RG GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLRGAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|328885529|emb|CCA58768.1| Ribonucleotide reductase of class II (coenzyme B12-dependent) [Streptomyces venezuelae ATCC 10712] Length = 941 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 128/668 (19%), Positives = 235/668 (35%), Gaps = 42/668 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L DR + E G + E E L F Sbjct: 70 RETGLKQLIDRIVKTYTKAGEE----------YGYFASPADAEIFEHELAYALLHQIFSF 119 Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 120 NSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKE 179 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H D+E+F+ + + Sbjct: 180 LLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVKEEE 238 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + V ++ G F R Sbjct: 239 KIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVESGGTF--------GLTSR 290 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V ++ A +L+RKM + P I + D N G ++ SN C+E Sbjct: 291 MTGEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCSEYMH- 349 Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + CNL S+NL+ N F+ ++ A + + +D I +K Sbjct: 350 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKVVELVITAMDISICFADFPTQKI 406 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ +R +G+G + L Y S +A ++ + S ELA G Sbjct: 407 GENTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVG 466 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762 AY + + + ++ + W ++ + G RN+ Sbjct: 467 AYDGYARNAAPHQRVMQQHADENTKAVRMDDLDSPIWAAATEAWQDVIRLGAKHGFRNAQ 526 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 IAPT TI + ++P + + K G +VN + L++ +E + Sbjct: 527 ASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 586 Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875 + + G++ + + + ++ A I M + + Q WI A S + Sbjct: 587 EAIVAHIAEHGNVIDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTV 646 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 L E + + ++ +Y +AW MG+K R S K D K ++ Sbjct: 647 NLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAKKKEDEKAEVTAKSEATIR 706 Query: 935 THSLGIPS 942 + Sbjct: 707 EAVEKVVE 714 >gi|302554609|ref|ZP_07306951.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces viridochromogenes DSM 40736] gi|302472227|gb|EFL35320.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces viridochromogenes DSM 40736] Length = 959 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 120/601 (19%), Positives = 227/601 (37%), Gaps = 38/601 (6%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT + Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQVFSFNSPVWFNVGTAQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E+F++ + + R D + + ++ Sbjct: 243 VDHPDIEDFIETKVKEEEKIRVLRDAGY----------DMDLGGDDITSVQYQNANNSVR 292 Query: 514 YGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 EF A E + RG +V ++ A +L+RK+ + P I + D N Sbjct: 293 VNDEFMKAVEQGGQFGLRGRMTGEVIEEVDAKSLFRKIAEAAWACADPGIQYDDTINGWH 352 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626 G + +SN C+E + CNL S+NL+ N F+ ++ + Sbjct: 353 TCPESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFEAERFQKVVE 408 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + +D I +K ++ R +G+G + L Y S +A Sbjct: 409 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 468 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TS 742 ++ A S ELA G Y + + + ++ + Sbjct: 469 TSLMTGTAYRRSSELAAVVGPYDGYARNADAHKRVMKQHFDANDKAVRMDDLDTPVWAAA 528 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800 W ++ + + G RNS +APT TI + ++P + + K G Sbjct: 529 SEAWQDVVRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQ 588 Query: 801 VVNSFLVNELKQRDL---WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF---EIDPM 854 +VN + L++ +EA+++ + H G++ + + + ++ A I PM Sbjct: 589 IVNGTVPQALRRLGYLEEQNEAIVAHIAEH-GNVIDAPGLKPEHYEVFDCAMGERAISPM 647 Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 + + Q WI A S + + E + ++++ IY +AW +G+K R Sbjct: 648 GHVRMMAAIQPWISGAISKTVNMPESATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQPL 707 Query: 914 S 914 S Sbjct: 708 S 708 >gi|72080560|ref|YP_287618.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae 7448] Length = 713 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 170/737 (23%), Positives = 297/737 (40%), Gaps = 99/737 (13%) Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + E ++ + +L L F ++G Y Y Sbjct: 47 FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 106 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L N + + + F RV + ++A + + F +TPT N+G + Sbjct: 107 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 165 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + SC+L V D++ I A+ + L+K GG+ + +R GA I ++ GV Sbjct: 166 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 225 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D+ NQ G+R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 226 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 285 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542 IP++ + N LFS V D+ +Y K F ENY + EIK ISA Sbjct: 286 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISENYYQMLANPEIKKTF-ISA 341 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597 L++ + + FE+G+P+I F+D N H V SNLC+EIT S+ Sbjct: 342 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSRFLPDLS 399 Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGS+N+ + D++++ A+ V+ D++ +K N Sbjct: 400 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 456 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 + + AIGLG M L I Y S EA++ + ++F A AS +LA++ G +S Sbjct: 457 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 516 Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759 F+ + + G + + E+ + + ++ W L +++K G+ Sbjct: 517 FEKTKFASGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIA 576 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS+ MAIAPT +I+ + + S+ P + ++ V S+ Sbjct: 577 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 622 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ K + A+E+ P+ +I S QK +DQA S+ L++ Sbjct: 623 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 666 Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + + + L+ Y A+ K+ YY+R R Sbjct: 667 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 695 Query: 938 LGIPSSCTSDTECEVCQ 954 + + C+ CQ Sbjct: 696 QDVLEDSENYETCQSCQ 712 >gi|322831490|ref|YP_004211517.1| ribonucleoside-diphosphate reductase, subunit alpha [Rahnella sp. Y9602] gi|321166691|gb|ADW72390.1| ribonucleoside-diphosphate reductase, alpha subunit [Rahnella sp. Y9602] Length = 720 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 169/740 (22%), Positives = 297/740 (40%), Gaps = 78/740 (10%) Query: 204 FSSRTLIEKEP-----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR 258 ++ L +P +Y + A L ++ + + + +F Sbjct: 1 MAATELAITDPGTRGPDYHALNAMLNLFDANGQIQFDKDRLAARQYFLQHVNQNTVFFHN 60 Query: 259 Y-------IEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-IN 310 +EEG + + D+ L ++ +LG Y Y L + Sbjct: 61 LAEKLRYLVEEGYYEAAVLDQYAFDDIKALFKQAYAKKFRFQTFLGAFKYYTSYTLKTFD 120 Query: 311 GSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 G R E + VA+ LA + + F + + S F +TPT N G + +L Sbjct: 121 GKRYLERYEDRVCMVALTLARGDIQLAGH---FVDEIISGRFQPATPTFLNCGKKQRGEL 177 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I ++ L+K GG+ T +R +GA I +S GVIP + Sbjct: 178 VSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFMLTNIREVGAPIKRIENQSSGVIPIM 237 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 238 KMLEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDI 297 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWR 547 + N LFSP + +YG + + + + ++ + KI+A ++ Sbjct: 298 TFELAKNNEDMYLFSP---YHVEKVYGVPMSEISISEKYREMVNDKRIHKSKINAREFFQ 354 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----- 602 + + FE+G+P++ F+D N +P G ++ SNLC+EI +S Sbjct: 355 VLAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNSPTIYGEDLSYQEIG 412 Query: 603 --GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659 S NL + + D +T+ AVR L V D+ + ++ + N AIGLG Sbjct: 413 KDISCNLGSLNIASAMDSPDFGNTVEMAVRALTAVSDMSHIRSVPSIDQGNQDSHAIGLG 472 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQ 718 M L I Y S E ++ + ++FHAI AS ++A E + ++ F S + Sbjct: 473 QMNLHGYLCRERIYYGSEEGLDFTNIYFCTVAFHAIRASNQIAIERQQSFKGFSDSTYAS 532 Query: 719 GVFPIDSIG------------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G + + + E+ + + + W LK V G+ N N A+ Sbjct: 533 GAYFDKYVDDALAAKWQPKTERVRELFADAGIAIPTTADWAALKASVMQHGLYNQNLQAV 592 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G +F+ N+ Sbjct: 593 PPTGSISYINNSTSSIHPIVSRVEIRKEGKIGRVYYPAAFMTND---------------- 636 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + A+EI P +I++ + + +DQ SL L+ + + + Sbjct: 637 ---------------NLDYYQDAYEIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRD 681 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 682 INKAQIYAWRKGIKTIYYIR 701 >gi|319788201|ref|YP_004147676.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudoxanthomonas suwonensis 11-1] gi|317466713|gb|ADV28445.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudoxanthomonas suwonensis 11-1] Length = 718 Score = 310 bits (793), Expect = 9e-82, Method: Composition-based stats. Identities = 127/628 (20%), Positives = 244/628 (38%), Gaps = 56/628 (8%) Query: 321 FMRVAMGL---ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFL 373 + RVA L E ++ F L + N+G + + +C + Sbjct: 50 YQRVARALADAEQTEEKRTYWYERFLWALRRGAI-PAGRITSNAGAQEHKPATSTINCTV 108 Query: 374 T-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + T+ D + GI + E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 109 SGTIGDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPRGAFVAGAGAYTSGPMSFMDIFD 168 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 V+ G R+GA + H DV++F+ ++ + R N + I D FM+ Sbjct: 169 KMCFTVSSAGGRRGAQMGTFDVSHPDVKDFIRAKR----EDGRLRQFNLSLLITDGFMEA 224 Query: 493 VTQNAGWTLFSPDEVS-----DLHDLYGKEFEIAYENYERQADRGEI----KVFRKISAV 543 V + W L P DL + + + + R + K++ I A Sbjct: 225 VDADGDWPLVFPVNRKEEADIDLSNADQVVWRDWPAHDDAYIVRDDGMVACKIYGHIKAR 284 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW ++ ++ P D N + + ++N C E L C LG Sbjct: 285 HLWEMIMVSTYDYAEPGFILIDRVNEMNNNWWCENIRATNPCGEQPLPPY----GACLLG 340 Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 S+NL + FD+++ +R R+LDNV+++N +E+ + R G+ Sbjct: 341 SVNLTKFVRDPFTDKASFDWEEYKEVVRVFTRMLDNVVEVNGLPLEQQRNEIMRKRRHGM 400 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS---- 714 G +G S L +L + Y S +++ ++ ++ + LA+E+G + Sbjct: 401 GFLGLGSTLTMLRMKYGSADSLGFTEQVARDMAVAGWEVGLSLAKEKGPAPIMDETFTVT 460 Query: 715 ---LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMA 765 L + D + E+ ++ R SR +L + G R ++ + Sbjct: 461 PQMLRQRPEMAKDGWRVGQEIEGKVLHARYSRYMQRIASVAPDLVDELAETGARFTHHSS 520 Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ S I+PS+ + Y ++ + ++ D++ +++ Sbjct: 521 IAPTGTISLSLANNASNGIEPSFAHHYSRNVI--------REGKKSKEKVDVYSFELLAY 572 Query: 824 LKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + + P+ L +A +I P ++ + QKW+D + S + + Sbjct: 573 RELVNPKAMPFSDDPEAQLPDYFISADDISPKEHVDVQAAAQKWVDSSISKTANVPTDYP 632 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + IYR A GLK R A Sbjct: 633 YEDFKDIYRYAHQQGLKGCTTFRFNPAA 660 >gi|194427894|ref|ZP_03060440.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] gi|194414127|gb|EDX30403.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli B171] Length = 714 Score = 310 bits (793), Expect = 1e-81, Method: Composition-based stats. Identities = 172/707 (24%), Positives = 287/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 VRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|260579707|ref|ZP_05847566.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium jeikeium ATCC 43734] gi|258602137|gb|EEW15455.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium jeikeium ATCC 43734] Length = 720 Score = 310 bits (793), Expect = 1e-81, Method: Composition-based stats. Identities = 172/714 (24%), Positives = 296/714 (41%), Gaps = 74/714 (10%) Query: 225 LEKLRREVLTTVYKKPQKATHH------EMQCLYPEYFCRYIEEGVKARLLHES-MMDFD 277 + L + + K ++A + +Y ++ V + ++ Sbjct: 28 MLNLYNDAGEIQFDKDREAANQYFLQHVNQNTVYFHDLEEKVKYLVDNEYYDPEVLDQYE 87 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVAMGLALKE 332 ++ + K F + Y Y +G R E + VA+GLA + Sbjct: 88 FSFVKSLFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGD 147 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391 + A + + F +TPT N G + + SCFL + D++ I ++ Sbjct: 148 ---TELASNLVDEIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSAL 204 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + VR GA I +S GVIP +K+ D NQ G R+GA Y Sbjct: 205 QLSKRGGGVALLLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVY 264 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 265 LHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVE 321 Query: 512 DLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YGK F E+YE + I+ + I+A A ++ + + FE+G+P+I F+D N Sbjct: 322 RVYGKPFADVSVTEHYEEMVEDPRIRKSK-INARAFFQTLAEIQFESGYPYIMFEDTVNK 380 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLA 622 +P G + SNLC+EI S+ E S NL + D + + Sbjct: 381 ANPI--EGRITHSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIAKAMDSEDFS 438 Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 TI TA+R L V D + ++ ++ N AIGLG M L HI Y S EA++ Sbjct: 439 KTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALD 498 Query: 682 IADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEV 732 + + + A+ AS ++AQER + +F+ S + G F + ++ Sbjct: 499 FTNAYFATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERVRQI 558 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 ++ + W +LK+ V+ G+ N N AI PT +I+ I + SI P + ++ Sbjct: 559 FGNSSIQVPTAQDWQQLKEAVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIR 618 Query: 793 SNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G ++ N + + + A+EI Sbjct: 619 KEGKIGRVYYPAPYMTN-------------------------------ENLEYYEDAYEI 647 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + K++DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 648 GYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIR 701 >gi|222102711|ref|YP_002539750.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium vitis S4] gi|221739312|gb|ACM40045.1| ribonucleoside-diphosphate reductase alpha subunit [Agrobacterium vitis S4] Length = 693 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 177/705 (25%), Positives = 290/705 (41%), Gaps = 69/705 (9%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESM-MDFDLVYLAND 284 +L ++ L Q + + E ++EG + + + +F + Sbjct: 12 QLDKDALAAKQYFLQHVNQNTVFFHNLREKLDYLVDEGYYEQAVLDQYAFNFVRDLFDHA 71 Query: 285 LKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVE 341 + F F +LG Y Y L +G R E + VA+ LA E A + Sbjct: 72 YV--KKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALTLAQG---NEALARD 126 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + + S F +TPT N+G + +L SCFL + D++ I + L+K GG+ Sbjct: 127 MVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRMEDNMESIARGINSALQLSKRGGGV 186 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ Sbjct: 187 ALSLTNIREAGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDIM 246 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLD ++ D++ R ++ IPD+ + N LFSP D+ +YG F Sbjct: 247 RFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSP---YDVERVYGVAFSE 303 Query: 521 --AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y I+ +KI A ++ + + FE+G+P+I F+D N +P G Sbjct: 304 ISVTEKYREMVADSRIRK-KKIKARDFFQVLAEIQFESGYPYIMFEDTVNRANPI--AGR 360 Query: 579 VHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + SNLC+EI N + S NL + D TI TA+R Sbjct: 361 ISMSNLCSEILQVSDVSTYNDDLSYKTMGKDISCNLGSLNIAAVMDSSDFGRTIETAIRA 420 Query: 632 LDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D+ + ++ +K N AIGLG M L I Y S E ++ + + Sbjct: 421 LTAVSDMSHISSVPSIEKGNDDSHAIGLGQMNLHGYLARERIFYGSEEGIDFTNMYFYTV 480 Query: 691 SFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDS--------IGLLAEVRDELAMNRT 741 ++HAI AS +A ERG + F+ S + G + +AE+ + ++ Sbjct: 481 TYHAIRASNRIAAERGTSFKGFENSKYASGEYFDKYTQTEWLPATRRVAELFETAGISIP 540 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFT 800 ++ W LK+ V G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 541 TQEDWLALKEVVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVY 600 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + +D + A+EI P +I++ Sbjct: 601 YP-------------------------------AAFMSNDNLDYYQDAYEIGPEKIIDTY 629 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 630 AAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTIYYIR 674 >gi|225869988|ref|YP_002745935.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. equi 4047] gi|225699392|emb|CAW92839.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. equi 4047] Length = 724 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 167/749 (22%), Positives = 305/749 (40%), Gaps = 80/749 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L ++ + + + ++ + ++ Sbjct: 29 KEAVQRYLEEHVYPQSLSFDSLEEKW-RYLVAHDYYDQEILKAYSAECITEAFTYAYQQK 87 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 +G Y Y L + + F R M + + + S Sbjct: 88 FSFLSLMGAMKFYQSYALKTLDGSQYL-EHFEDRAVMNALFLANGDPDLVRDLIDQILSG 146 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F +TPT N+G + + SC+L + D++ I A+ + L+K GG+ T +R Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLR 206 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G+ I G ++ G++P +K+ D+ NQ G+R+GA YL H ++ FLD ++ Sbjct: 207 EVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFLDTKRE 266 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R + IPD+ + +N LFSP D+ +YGK+ E Sbjct: 267 NADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAITEEYD 323 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + + ISA L++ + + FE+G+P++ F D N R+P G + SNLC+E Sbjct: 324 RLVANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVMSNLCSE 383 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I S++ E CNLGSIN+ + I T+VR LD+V Sbjct: 384 IAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAV----GFEQLIATSVRALDHV 439 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + +K N + A+GLG M L HI Y S EAV+ D ++++A Sbjct: 440 SRASDVSCAPSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSAEAVDFTDLFFHTMAYYA 499 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPW 746 AS +LA+E+GA++ F+ S + G + + A+ + + + S W Sbjct: 500 FKASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYGLRVPSVADW 559 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 EL ++ G+ N++ MA+APT +I+ + + S+ P + V+ V ++ Sbjct: 560 QELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHLGRIYVPAY- 618 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQK 865 +I DD + A+E+ P +I + QK Sbjct: 619 -----------------------------QISDDNYAYYERGAYEVGPEPIINIVAAAQK 649 Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 +DQA SL L++ + + + L+ Y A+ + + YY+R R + Sbjct: 650 HVDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR----------------QD 693 Query: 925 AVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + + + S C+ C Sbjct: 694 VLEGSEQYEEDTIVALTDTNASGEACQSC 722 >gi|239833483|ref|ZP_04681811.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum intermedium LMG 3301] gi|239821546|gb|EEQ93115.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum intermedium LMG 3301] Length = 722 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 179/745 (24%), Positives = 299/745 (40%), Gaps = 93/745 (12%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S L+ + + L + E + + AR + + + +K + + Sbjct: 18 STDGLDYHALNAMLNLYDDEGKIQLDRDRQAARQYFLQHVNQNTVFFHNLREKLDYLVSE 77 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH 308 Y + +L + +F Y + F F +LG Y Y L Sbjct: 78 GYY------------EQEVLDQYSFNFVRDLFDEA--YAKKFRFPTFLGAFKYYTSYTLK 123 Query: 309 -INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 +G R E + RV M E+ A + + S + +TPT N+G + Sbjct: 124 TFDGKRYLERYED---RVCMVALALARGNEQLARDLMEEIISGRYQPATPTFLNAGKKQR 180 Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +L SCFL V D++ I ++ L+K GG+ T +R GA I +S G+I Sbjct: 181 GELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIQNQSSGII 240 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ I Sbjct: 241 PVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVI 300 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 PD+ + N LFSP +V ++ L Y A + +KI+A Sbjct: 301 PDITFELAKNNEDMYLFSPYDVERVYGMPLTEISVSEKYREMVDDARIAK----KKINAR 356 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------N 591 ++ + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 357 EFFQVLAEIQFESGYPYIMFEDTVNRANPI--DGRITMSNLCSEILQVSEASVFREDLSY 414 Query: 592 SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSN 650 + CNLGS+N+ A D TI T++R L V D+ + ++ + N Sbjct: 415 DYLGKDISCNLGSLNIAAA-----MDSSDFGKTIETSIRSLTAVSDMSHIGSVPSVARGN 469 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYS 709 AIGLG M L I Y S E V+ + +++HAI AS +A E ++ Sbjct: 470 DESHAIGLGQMNLHGYLARERIYYGSEEGVDFTNIYFYTVTYHAIRASNLIAVEAGKSFK 529 Query: 710 SFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNS 761 F+ S + G + L E D+ + ++ W +LKK V G+ N Sbjct: 530 GFEKSKYASGEYFDKYTEQLWEPATERVREIFDKAGIAIPTQDDWRDLKKAVMEGGLYNQ 589 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820 N A+ PT +I+ I + SI P + ++ G +F+ N+ Sbjct: 590 NLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMTND----------- 638 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + A+EI P +I++ + + +DQ SL L+ + Sbjct: 639 --------------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDT 678 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + ++ AW G+KT YY+R Sbjct: 679 ATTRDINRAQIYAWKKGIKTIYYIR 703 >gi|302866053|ref|YP_003834690.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora aurantiaca ATCC 27029] gi|302568912|gb|ADL45114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora aurantiaca ATCC 27029] Length = 964 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 121/619 (19%), Positives = 223/619 (36%), Gaps = 28/619 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E A E +L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 116 GYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILD 175 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E + + G G + + +R + G + G + F++ A+ +A + G R Sbjct: 176 WYKEEGRIFQGGSGAGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 234 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF+ + D R D + + V Sbjct: 235 RAAKMVILDVDHPDIEEFVATKAREEDKIRALRDAGFDMDLGGADIVSVQYQNANNSVRV 294 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + G F++ R + + I A L+ + +E P + + Sbjct: 295 SDEFMTAVENGGGFDLR--------GRLDGQTIETIDAKKLFHTISQAAWECADPGLQYD 346 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 D N G + +SN C+E + + CNL S+NL+ + F+ +K Sbjct: 347 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVK 402 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I EK ++ +R +G+G + L +PY S + E++ Sbjct: 403 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGREVS 462 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 ++ A S ELA G Y + + ++ A+ Sbjct: 463 AAITSLMTGTAYRRSAELAGIVGPYDGYARNAEPHKRVMRKHAAANDAIKATGTVATAVQ 522 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 R + W K G RNS +APT TI + + ++P + + K G Sbjct: 523 REATKQWTLGNKLGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 582 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L+ +E + + + G + + + + + A I Sbjct: 583 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 642 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q +I A S + + E + + ++ IY + W +GLK R Sbjct: 643 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 702 Query: 912 EKSTLKGVDGKLNAVPVTD 930 S K Sbjct: 703 PLSAAKPNKATAETQAPAA 721 >gi|50313262|ref|YP_053066.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 1] gi|132607|sp|P28846|RIR1_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|42795148|gb|AAS45905.1| large subunit of ribonucleotide reductase [Equid herpesvirus 1] gi|49617005|gb|AAT67278.1| ribonucleotide reductase RR1 [Equid herpesvirus 1] Length = 790 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 166/653 (25%), Positives = 276/653 (42%), Gaps = 63/653 (9%) Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK--------------EKRAVEFYNLLS 347 + Y + G RIE FF+R+A E+ ++ L+ Sbjct: 141 EEMYLAKMRGGRIESMGQFFLRLATTATHYTMEEPAMARVLVSGEVGWTYIFKAYFTALA 200 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP + G L+SC+L V D + ++E + GG+G Sbjct: 201 GQVLIPATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCNRGGIGLSLQ 260 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 G S+GV+ LK+ + +A+N G+R VC Y E WH D+ L++ Sbjct: 261 RFNT-----PPKEGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYFEPWHADIRAILNM 315 Query: 466 R-KNTGDDRRRTHDMNTANWIPDLFMKRVT-----QNAGWTLFSPDEVSDLHDLYGKEFE 519 R D+ R ++ W PDLF R ++ D S L +YGKEFE Sbjct: 316 RGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLFDDTASHLCHMYGKEFE 375 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVG 577 YE E+ + I + ++ TG P++ FKD CN + G Sbjct: 376 EEYERLEQCGFGVD-----SIPIQDMAFIIVRSAVMTGSPFLMFKDACNKHYHFDLRRKG 430 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAV 629 + SNLCTEI ++ + VCNL SINL A FD+ L TA Sbjct: 431 AIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPYFDFAALGRAAATAT 490 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +++++ + K+++ +R++GLG+ G +A +L + ASPEA ++ + E Sbjct: 491 IFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEARQLNKQIAER 550 Query: 690 ISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDE 748 + +++ AS L + + F+ S + G P DS + +R W Sbjct: 551 LLLNSMKASATLCRLGMKPFKGFEDSKYSLGELPFDSYP---------GVTLANRNAWRR 601 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L+ +K G+ NS +A PT + + + S+ P Y NL+ K +G+ N L+ Sbjct: 602 LRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNLLLMR 661 Query: 809 ELKQ---RDLWDEAMISDLKYHDGSIGNIER-IP-DDLKKIHATAFEIDPMWLIESASRR 863 ++ R+ +S L+ S+ +P TAFE D LI+ + R Sbjct: 662 TIRSIFPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFKTAFEYDQRTLIDMCADR 721 Query: 864 QKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 ++DQ+QS++L++ EP K+ + A+ GLKT YY + + AT+ Sbjct: 722 APFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKKATN 774 >gi|315298702|gb|EFU57956.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 16-3] Length = 701 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMTTHVRPNCVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDKKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|300906828|ref|ZP_07124509.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|301306008|ref|ZP_07212088.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|300401429|gb|EFJ84967.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 84-1] gi|300838719|gb|EFK66479.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 124-1] gi|315254451|gb|EFU34419.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 85-1] Length = 701 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI + + E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A++I +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYKIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|205357273|ref|ZP_02346446.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322676|gb|EDZ10515.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 714 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 173/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E ++EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVQEGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENVQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|144227518|gb|AAZ44306.2| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma hyopneumoniae J] Length = 720 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 169/737 (22%), Positives = 296/737 (40%), Gaps = 99/737 (13%) Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + E ++ + +L L F ++G Y Y Sbjct: 54 FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 113 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L N + + + F RV + ++A + + F +TPT N+G + Sbjct: 114 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 172 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + SC+L V D++ I A+ + L+K GG+ + +R GA I ++ GV Sbjct: 173 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 232 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D+ NQ G+R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 233 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 292 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542 IP++ + N LFS V D+ +Y K F E Y + EIK ISA Sbjct: 293 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISA 348 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597 L++ + + FE+G+P+I F+D N H V SNLC+EIT S+ Sbjct: 349 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLS 406 Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGS+N+ + D++++ A+ V+ D++ +K N Sbjct: 407 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 463 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 + + AIGLG M L I Y S EA++ + ++F A AS +LA++ G +S Sbjct: 464 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 523 Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759 F+ + + G + + E+ + + ++ W L +++K G+ Sbjct: 524 FEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPTQKDWIHLVEKIKKTGIA 583 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS+ MAIAPT +I+ + + S+ P + ++ V S+ Sbjct: 584 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 629 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ K + A+E+ P+ +I S QK +DQA S+ L++ Sbjct: 630 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 673 Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + + + L+ Y A+ K+ YY+R R Sbjct: 674 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 702 Query: 938 LGIPSSCTSDTECEVCQ 954 + + C+ CQ Sbjct: 703 QDVLEDSENYETCQSCQ 719 >gi|307944766|ref|ZP_07660104.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp. TrichSKD4] gi|307771980|gb|EFO31203.1| ribonucleoside-diphosphate reductase, alpha subunit [Roseibium sp. TrichSKD4] Length = 715 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 175/743 (23%), Positives = 309/743 (41%), Gaps = 89/743 (11%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 + ++L+ + + L +++ + R + + + H +Q Sbjct: 11 ASAELDYHALNAMLNLYDEKGHIQFEADRQAARQYFLQ-----HVNQNTVFFHSLQ---- 61 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-I 309 E + EG + + +D ++ + Y R F F +LG Y Y L Sbjct: 62 EKLGYLVREGYYEAEV---LEQYDPAFVQSVFDAAYARKFRFPTFLGAFKYYTSYTLKTF 118 Query: 310 NGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-Q 367 +G R E + + VA+ LA + + R + + + S F +TPT N+G + + Sbjct: 119 DGKRYLERFEDRVVMVALTLAQGDEDLAMRMM---DEIISGRFQPATPTFLNAGKKQRGE 175 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 L SCFL + D++ I + L+K GG+ T +R GA I G +S GVIP Sbjct: 176 LISCFLLRLEDNMESIGRGINSALQLSKRGGGVALLLTNIREAGAPIKGIENQSSGVIPV 235 Query: 428 LKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPD 487 +K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R ++ IPD Sbjct: 236 MKLLEDSFSYANQLGARQGAGAVYLNAHHPDILQFLDTKRENADEKIRIKTLSLGVVIPD 295 Query: 488 LFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 + + +N LFSP +V ++ L Y + +KISA Sbjct: 296 ITFELAKRNEDMYLFSPHDVEKVYGTSLSQISITDKYREMVDDPRIRK----KKISARGF 351 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSS 593 ++ + + FE+G+P++ F+ N SP G ++ SNLC+EI Sbjct: 352 FQTIAEIQFESGYPYVLFEGTANRASPV--DGHINMSNLCSEILQVNEASVFNDDLSYEH 409 Query: 594 SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHT 652 CNLGS+N+ D L +T+ TAVR L V +++ ++ ++ N Sbjct: 410 LGTDISCNLGSLNIAKA-----MDGGDLGATVETAVRALTAVSNMSAIDSVPSVRRGNDE 464 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSF 711 AIGLG M L I Y S E ++ + +++H + AS +LA+E+ ++ F Sbjct: 465 SHAIGLGQMNLHGYLARERIHYGSEEGIDFTNIYFYAVAYHCLRASNKLAREQGSSFKGF 524 Query: 712 KGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 + S + G F I + ++ + W LK+ V+ G+ N N Sbjct: 525 EKSRYADGSFFDKYIENDWMPATERIANLFETAGISLPTCDDWQALKEAVQRDGLYNRNL 584 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMIS 822 A+ PT +I+ I + SI P + ++ G +++ N+ Sbjct: 585 QAVPPTGSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAAYMDND------------- 631 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PS 881 + A+EI P +I++ + + +DQ SL L+ + + Sbjct: 632 ------------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTAT 673 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + ++ AW G+KT YY+R Sbjct: 674 TRDINRAQIYAWKKGIKTIYYIR 696 >gi|289423476|ref|ZP_06425278.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus anaerobius 653-L] gi|289156110|gb|EFD04773.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus anaerobius 653-L] Length = 704 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 161/676 (23%), Positives = 275/676 (40%), Gaps = 59/676 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311 E +E + + E + L + Y+ Y+ Y L + Sbjct: 51 EKIDYLVENAYYEKEIIEKYSREFIDELYKYICSFGFEFMSYMSASKFYENYALKTDDGK 110 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSS 370 +E + + ++ +A + + A + L F +TPT N R QL S Sbjct: 111 KILENYEDKILICSLAIASGD---TRVAKDVAKRLIKQEFQPATPTFLNLGRKRAGQLVS 167 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL TV D GI A+ L+K GG+ + T +R G I G G S GV+ K+ Sbjct: 168 CFLLTVEDSCEGISYAVASANHLSKIGGGVALNLTRLRARGESIKGIEGASGGVVGVAKM 227 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + NQ G R+GA YL H D + +D +K D+R R ++ IPD+FM Sbjct: 228 LEQSFSYFNQMGARQGAGAVYLNVLHADFDALMDTKKINADERVRLATLSIGAIIPDVFM 287 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 K +N F P + + L+ + E Y++ +I+ ++I+ + ++ Sbjct: 288 KLAEKNEVGYAFYPHSIYKKYALHLDDLN-MNEWYDKLVADPDIRK-KEINPRVILTRIA 345 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------- 602 E+G+P+I + D N + +G+V SNLC EI S Sbjct: 346 ATQMESGYPYIVYIDTANKNHTLKGLGMVRMSNLCCEIFQYQSPSHIEGYGSKNSQWGQD 405 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLM 661 S NL + N + ++ I A+R L +V D N + K N ++GLG M Sbjct: 406 ISCNLGSLNIANIMEGKEMGHAIDVAIRFLTDVSDRTNIEEVPTVKNGNDKSHSVGLGAM 465 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720 L +I Y S EAV+ + + +HAI S+++A+E+ + F+ S + +G Sbjct: 466 NLHGYLMKNNIRYDSDEAVDFCNVFFAMMRYHAIKTSMKIAKEKGQTFDGFEKSEYSKGE 525 Query: 721 --------FPIDSIGLLAEVRDELAMNRTSR-LPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + ID + +VR R W +L +VK +G+ N+ MAIAPT + Sbjct: 526 SSDVLGKYYQIDYLPKTDKVRALFEGMMIPRKEDWKDLLDQVKEVGIYNAYLMAIAPTQS 585 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ + + S+ P + + V+ FL N Sbjct: 586 ISYVQNATSSVMPITEQIEVRIYGDSTTIYPMPFLTN----------------------- 622 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYR 890 + + +A+ D + +I+ + Q +DQ S L++ + + + + Y Sbjct: 623 --------ENLLFYKSAYNTDMLKVIDVVAAVQDHVDQGISTTLFVTDDKTTRDIARYYI 674 Query: 891 QAWLMGLKTTYYLRSR 906 A+ GLK+ YY R++ Sbjct: 675 YAYKKGLKSLYYTRTK 690 >gi|59859089|gb|AAX09329.1| NrdE [Corynebacterium stationis] Length = 720 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 164/690 (23%), Positives = 276/690 (40%), Gaps = 67/690 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301 H +Y IE V+ + +++ +D ++ + K F F + Sbjct: 51 LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKSFLGA 110 Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y +G R E + RV+M A + + S F +TP Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQPATP 167 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G +L SCFL + D++ I A+ + L+K GG+ + +R GA I Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIK 227 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S G+IP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 228 HIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIR 287 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGE 533 ++ IPD+ +N LFSP +V ++ Y + Sbjct: 288 IKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVSDHYAEMVEDPRITK 347 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 +KI+A ++ + + FE+G+P+I F+D N +P G ++ SNLC+EI +S Sbjct: 348 ----KKINARHFFQTVAELQFESGYPYIMFEDTVNNANP-VKTGRINMSNLCSEILQVNS 402 Query: 594 SEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 + + S NL + D T+ A+R L V D ++ Sbjct: 403 PSSFNDDLSYEEMGSDISCNLGSMNIALAMDSPDFGGTVEAAIRGLTAVADKTAIDSVPS 462 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + N AIGLG M L HI Y S E ++ + + + A+ AS ++A+ER Sbjct: 463 IRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYAALRASNKIAKER 522 Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 +S FK S + GVF + + E+ ++ S W +LK V Sbjct: 523 GETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAEDWADLKAEVMEH 582 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815 G+ N N A+ PT +I+ I + SI P + ++ G + N+ Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 A+E+ +I++ + K++DQ SL L Sbjct: 637 -------------------------NLDYFQDAYEVGHEKIIDTYAVATKYVDQGLSLTL 671 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + ++ AW G+KT YY+R Sbjct: 672 FFKDTATTRDINRAQIYAWRKGIKTLYYIR 701 >gi|54020061|ref|YP_115672.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae 232] gi|53987234|gb|AAV27435.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma hyopneumoniae 232] Length = 720 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 172/790 (21%), Positives = 310/790 (39%), Gaps = 115/790 (14%) Query: 196 SDLETALIFSSRTLIEKEPN---YAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + + ++ + P+ + + A + + E+ + + Sbjct: 14 QEKSYLSLNANSKIFTNHPDSHKFDLLAAE---KYINEEINPKF----------KFFNSF 60 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E ++ + +L L F ++G Y Y L N + Sbjct: 61 KERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTYGLKSNDN 120 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 + + F RV + ++A + + F +TPT N+G + + SC Sbjct: 121 LVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLNRGEFVSC 179 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +L V D++ I A+ + L+K GG+ + +R GA I ++ GVIP +K+ Sbjct: 180 YLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGVIPVMKIL 239 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G+R+GA YL H D+ FLD ++ D++ R ++ IP++ + Sbjct: 240 EDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGIIIPNITFE 299 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 N LFS V D+ +Y K F E Y + EIK ISA L++ + Sbjct: 300 LAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISARKLFKII 355 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597 + FE+G+P+I F+D N H V SNLC+EIT S+ Sbjct: 356 AELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLSFKEIGKD 413 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + D++++ A+ V+ D++ +K N+ + AIG Sbjct: 414 ICCNLGSLNIDKAMES-GPDFEQMVYYSVLALDVVSRNSDLSVA--PSIQKGNNLNHAIG 470 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L I Y S EA++ + ++F A AS +LA++ G +S F+ + + Sbjct: 471 LGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSGFEKTKFA 530 Query: 718 QGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G + + E+ + + ++ W L +++K G+ NS+ MAI Sbjct: 531 SGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLVEKIKKTGIANSHLMAI 590 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + ++ V S+ Sbjct: 591 APTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY--------------------- 629 Query: 827 HDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 ++ K + A+E+ P+ +I S QK +DQA S+ L++ + + + Sbjct: 630 ---------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMTDKATTRD 680 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 L+ Y A+ K+ YY+R R + Sbjct: 681 LNRAYIYAFKKNCKSIYYVRIR-------------------------------QDVLEDS 709 Query: 945 TSDTECEVCQ 954 + C+ CQ Sbjct: 710 ENYETCQSCQ 719 >gi|114766103|ref|ZP_01445112.1| ribonucleotide-diphosphate reductase alpha subunit [Pelagibaca bermudensis HTCC2601] gi|114541658|gb|EAU44699.1| ribonucleotide-diphosphate reductase alpha subunit [Roseovarius sp. HTCC2601] Length = 707 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 192/747 (25%), Positives = 316/747 (42%), Gaps = 90/747 (12%) Query: 189 MYDGLSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKAT 244 M D +SE+ L+ + + L + E + ++ AR + + + +K Sbjct: 1 MLDRMSET-LDYHALNAMLNLYDDEGHIRFDADRMAARQYFLQHVNQNTVFFHSLDEKLD 59 Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYD 303 + +EEG + E+ L + + +++ F F +LG Y Sbjct: 60 Y-------------LVEEGYYEAEVLEAYPRAFLQQIWDAA-FKKKFRFPTFLGAFKYYT 105 Query: 304 RYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS 361 Y L +G R E + + VA+ LA + + +E + S F +TPT N+ Sbjct: 106 SYTLKTRDGKRFLERYEDRVVMVALALARGDQDLAMSFME---EILSGRFQPATPTFLNA 162 Query: 362 GTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 G + +L SCFL + D++ I + L+K GG+ T +R GA I G + Sbjct: 163 GKKSRGELISCFLLRLEDNMESIGRGINSALQLSKRGGGVALMLTNIREHGAPIKGIENQ 222 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 223 SSGVIPIMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLS 282 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK- 539 IPD+ + +N LFSP +V +YG F + + ++ + Sbjct: 283 LGVVIPDVTFELAKRNEPMYLFSPHDV---EKIYGVPFSEISVTEKYDEMVEDKRIRKTK 339 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL--------- 590 I+A + ++ + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 340 INARSFFQTLAEIQFESGYPYIMFEDTVNRMNPI--DGRITMSNLCSEILQVNEASEYNE 397 Query: 591 ---NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKA 646 + CNLGS+N+ D L +T+ A+R L V +++ ++ Sbjct: 398 DLSYARMGTDISCNLGSLNIAKS-----MDGRDLGATVEAAIRALTAVSEMSAIDSVPSI 452 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705 +K N AIGLG M L HI Y SPE VE +++HAI AS LA+ER Sbjct: 453 RKGNDESHAIGLGQMNLHGFLAREHIHYGSPEGVEFTSVYFATVAYHAIRASCALAKERG 512 Query: 706 GAYSSFKGSLWDQGVFPI---DSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMR 759 ++ F S + GVF + L R + + R W LK V G+ Sbjct: 513 ESFKGFAASDYASGVFFDKYTERDWLPESDRVAELFDGIALPSRADWAALKADVMEHGLY 572 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDE 818 N N A+ PT +I+ I + SI P + ++ G +F+ N+ Sbjct: 573 NRNLQAVPPTGSISYINNSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMNND--------- 623 Query: 819 AMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 + + A+EI P LIE+ + + +DQ SL L+ Sbjct: 624 ----------------------NLEYYRDAYEIGPEALIETYAAATEHVDQGLSLTLFFP 661 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLR 904 E + + ++ AW G+KT YY+R Sbjct: 662 AEATTRDINRAQILAWKKGIKTIYYVR 688 >gi|306812444|ref|ZP_07446642.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] gi|305854482|gb|EFM54920.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli NC101] Length = 714 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 287/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +Y K Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYSKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|323946353|gb|EGB42382.1| ribonucleotide reductase [Escherichia coli H120] Length = 701 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|161502143|ref|YP_001569255.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863490|gb|ABX20113.1| hypothetical protein SARI_00166 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 705 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 173/675 (25%), Positives = 286/675 (42%), Gaps = 62/675 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 51 DERLDTLVREGYYDDAILARYDRAFVLSLFGHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIQNQSSGVIPVMK 227 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELLADSHVRKTYINARDFFQT 344 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCN 601 + + FE+G+P+I F+D N +P G ++ SNLC+EI +S+ + + Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYIHIGH 402 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + + D + T+ TA+R L V D+ + ++ N AIGLG Sbjct: 403 DISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQ 462 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G Sbjct: 463 MNLHGYLAREGIAYGSPEALDFTNFYFYTITWHALHTSMRLARERGKTFAGFAQSRYASG 522 Query: 720 VF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + D A+VR A + +R W +L+ V G+ N N A+ PT + Sbjct: 523 DYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGS 582 Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ +G F+ N Sbjct: 583 ISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN---------------------- 620 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + ++ A+EI P +I++ + + +DQ SL L+ + + + ++ Sbjct: 621 ---------ENLDMYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 671 Query: 890 RQAWLMGLKTTYYLR 904 AW G+K+ YY+R Sbjct: 672 IYAWRKGIKSLYYIR 686 >gi|220916577|ref|YP_002491881.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter dehalogenans 2CP-1] gi|219954431|gb|ACL64815.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter dehalogenans 2CP-1] Length = 595 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 169/640 (26%), Positives = 269/640 (42%), Gaps = 86/640 (13%) Query: 293 FEYLGLQILYDRYFLHING-SRIEMPQAFFMRVAMGLALKETEKEK--RAVEFYNLLSSF 349 +L RY L G IE P+A F RVA +A E + A F +++ Sbjct: 4 LGENARHVLERRYLLRDEGGQVIETPEAMFRRVAQAVAAAEHPAARALWAERFEARMAAL 63 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + ++PTL N+G H QL++CF+ V DDL IF AL+ A++ + GG G ++ +R Sbjct: 64 ELLPNSPTLMNAGRAHGQLAACFVLPVDDDLAAIFDALKWAALIHQSGGGTGFSFSRLRP 123 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G + T+G + G + F++V + + QGG R+GA A L H DV EF+D ++ Sbjct: 124 RGDVVKTTHGVASGPVSFMRVYDAATEIIKQGGVRRGANMAVLAADHPDVLEFVDAKRAA 183 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + + N + PD ++ GW L P Sbjct: 184 GLE-----NFNISVSAPDALFHAAARSGGWALRHPR------------------------ 214 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 V R++ A L ++ + +G P + F D +P +G + N C E Sbjct: 215 ---GGAVVREVDAAGLLERIAASAWASGEPGLVFLDRVEAANPTPDLGRFEAVNPCGEQP 271 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS 649 L C LGS+NL + D ++L + +R VR+LD+V+D+N + + + Sbjct: 272 LLPF----EACTLGSVNLARFERGGRVDLERLGACVRDGVRLLDDVLDVNVWPLPQIAEI 327 Query: 650 NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYS 709 + +R IGLG+MG+ L L IPY +PEA+ +A E M F+ A +AS LA ERGA+ Sbjct: 328 SRRNRKIGLGVMGWADLLVALGIPYDAPEALALAGEVMGFVQREAHAASEALAAERGAFP 387 Query: 710 SFKGS-LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 F S G P RN+ IAP Sbjct: 388 GFASSAPARSGGRP-----------------------------------RRNATVTTIAP 412 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL---- 824 T T+A I G S I+P + YV+ + ++ L E A ++ Sbjct: 413 TGTLAIIAGCSSGIEPLFALTYVRHALD------DAALPEEHPALGRALRAAGAEAALPA 466 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 G + +PD + ++ ATA ++ P + + Q+ +D S + L S + Sbjct: 467 VRAAGRARGVAGVPDAVARVFATAHDVTPEAHVRMQAAFQRHVDNGVSKTINLPRTASVE 526 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 + YR A+ +G K R S + +G+L Sbjct: 527 DVACAYRLAFELGCKGITVYRDGSREKQVLVSGATRNGEL 566 >gi|331648396|ref|ZP_08349484.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] gi|331042143|gb|EGI14285.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli M605] Length = 714 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 ERINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|322614369|gb|EFY11300.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621566|gb|EFY18419.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624427|gb|EFY21260.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626625|gb|EFY23430.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633515|gb|EFY30257.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638442|gb|EFY35140.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639745|gb|EFY36429.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643791|gb|EFY40341.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649477|gb|EFY45911.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655933|gb|EFY52233.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661328|gb|EFY57553.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662526|gb|EFY58734.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666900|gb|EFY63075.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671270|gb|EFY67393.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677723|gb|EFY73786.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681450|gb|EFY77480.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683849|gb|EFY79859.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193762|gb|EFZ78965.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197450|gb|EFZ82587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203265|gb|EFZ88294.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205211|gb|EFZ90186.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212776|gb|EFZ97587.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218082|gb|EGA02794.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221655|gb|EGA06068.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323230845|gb|EGA14963.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234804|gb|EGA18890.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238843|gb|EGA22893.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241543|gb|EGA25574.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248310|gb|EGA32246.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252924|gb|EGA36758.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256954|gb|EGA40663.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260571|gb|EGA44182.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264371|gb|EGA47877.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269505|gb|EGA52958.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 705 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 51 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 517 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686 >gi|68535548|ref|YP_250253.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium jeikeium K411] gi|68263147|emb|CAI36635.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium jeikeium K411] Length = 720 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 172/714 (24%), Positives = 293/714 (41%), Gaps = 74/714 (10%) Query: 225 LEKLRREVLTTVYKKPQKATHH------EMQCLYPEYFCRYIEEGVKARLLHES-MMDFD 277 + L + + K ++A + +Y ++ V + ++ Sbjct: 28 MLNLYNDAGEIQFDKDREAANQYFLQHVNQNTVYFHDLEEKVKYLVDNEYYDPEVLDQYE 87 Query: 278 LVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVAMGLALKE 332 ++ + K F + Y Y +G R E + VA+GLA + Sbjct: 88 FSFVKSLFKQAYAKKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALGLAAGD 147 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENA 391 + A + + F +TPT N G + + SCFL + D++ I ++ Sbjct: 148 ---TELASNLVDEIMDGRFQPATPTFLNIGKKQRGEPVSCFLLRIEDNMESIGRSINSAL 204 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ + VR GA I +S GVIP +K+ D NQ G R+GA Y Sbjct: 205 QLSKRGGGVALLLSNVREAGAPIKHIENQSSGVIPVMKLLEDAFSYANQLGARQGAGAVY 264 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ Sbjct: 265 LSAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVE 321 Query: 512 DLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YGK F E+YE + I+ + I+A A ++ + + FE+G+P+I F+D N Sbjct: 322 RVYGKPFADVSITEHYEEMVEDPRIRKSK-INARAFFQTLAEIQFESGYPYIMFEDTVNK 380 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLA 622 +P G + SNLC+EI S+ E S NL + D + + Sbjct: 381 ANPI--EGRITHSNLCSEILQVSTPSEFNADLSYKQIGDDISCNLGSMNIAKAMDSEDFS 438 Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 TI TA+R L V D + ++ ++ N AIGLG M L HI Y S EA++ Sbjct: 439 KTIETAIRGLTAVADQTSIDSVPSVRQGNDNSHAIGLGQMNLHGFLGREHIHYGSEEALD 498 Query: 682 IADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR------- 733 + + + A+ AS ++AQER + +F+ S + G F + Sbjct: 499 FTNAYFATVMYEALKASNKIAQERGEKFHNFENSQYATGEFFDRYDPAEFAPKTERIRQI 558 Query: 734 -DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 ++ + W +LK V+ G+ N N AI PT +I+ I + SI P + ++ Sbjct: 559 IGNSSIQVPTAQDWQQLKDDVQAHGLYNRNLQAIPPTGSISYINNSTSSIHPIASKIEIR 618 Query: 793 SNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G ++ N+ + + A+EI Sbjct: 619 KEGKIGRVYYPAPYMTND-------------------------------NLEYYEDAYEI 647 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + K++DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 648 GYEKIIDTYAVATKYVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYIR 701 >gi|240047143|ref|YP_002960531.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma conjunctivae HRC/581] gi|239984715|emb|CAT04687.1| Ribonucleoside-diphosphate reductase [Mycoplasma conjunctivae] Length = 720 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 175/771 (22%), Positives = 306/771 (39%), Gaps = 101/771 (13%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ------CLYPEYFCRYIEEGVKARL 268 Y + A+ L +E + + + ++ + + IE Sbjct: 17 EYIALNAKSKLFTKYKEAYKFDLQAAKSYIQNHIEPKFRKFENFHQRIQWLIENKFYDPQ 76 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL 328 + +L L + F ++G Y Y L N + + + F R M Sbjct: 77 VINEYTFDELEKLNEQAYSYKHFFPSFMGAFKFYLSYALKSNDGQQYL-EHFEDRALMNA 135 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGAL 387 ++A + + F +TPT N+G + + SC+L V D++ I A+ Sbjct: 136 LFLARGNYEKASKILRQIMLGRFQPATPTFLNAGKLNRGEFISCYLIRVEDNMESISRAV 195 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 + L+K GG+ + +R GA I ++ GVIP +K+ D+ NQ G+R+GA Sbjct: 196 TTSLQLSKRGGGVSVLLSNLREQGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQGA 255 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL H D+ FLD ++ D++ R ++ IPD+ + N LFS V Sbjct: 256 GAVYLNVHHPDILNFLDTKRENADEKIRIKSLSLGVVIPDITFELAKNNQDMALFS---V 312 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDP 566 D+ + YGK F E ++ + ISA L+ + + FE+G+P+I F+D Sbjct: 313 YDVQNEYGKAFSDISITEEYYNLLNNDRIKKTFISARKLFTLIAELHFESGYPYILFEDT 372 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANN 614 N R H + SNLC+EI S+ E CNLGS+N+ + Sbjct: 373 VNKR--NAHPNRIVMSNLCSEIAQPSTPSEYLPDLTFSKIGQDICCNLGSLNIDKAMKS- 429 Query: 615 QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 ++ ++ A+ + D++ +K N + A+GLG M L I Y Sbjct: 430 GKEFGEMVYYSILALDHVSRNSDLS--AAPSIEKGNKLNHAVGLGAMNLHGFLSQNQIFY 487 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG------- 727 SPEA++ + ++FHA +S LAQ+ G +S F+ + + G + Sbjct: 488 DSPEALDFTNIFFYTMAFHAFKSSSILAQKFGPFSGFENTKFANGSYFDKYTKAKSGEFE 547 Query: 728 ----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + E+ + ++ W +L + +K +G+ NS+ MAIAPT +I+ + + S+ Sbjct: 548 PKTQKIKEIFAHYKVEIPTKQDWIDLVENIKRVGLANSHLMAIAPTGSISYLNSCTPSLQ 607 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + V+ V ++ +N D+++ Sbjct: 608 PVVSPVEVRKEGKLGRVYVPAYKINF-----------------------------DNMRY 638 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY 902 A+E+ P+ +I A+ QK IDQ+ SL L+L + + + L+ Y A+ G + YY Sbjct: 639 YAKGAYELGPIPIINIAAEAQKHIDQSISLTLFLTDKATTRDLNKAYIHAFKKGCGSIYY 698 Query: 903 LRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 +R R + ECE C Sbjct: 699 VRIR-------------------------------QEVLEDSEKYDECEAC 718 >gi|320198427|gb|EFW73029.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli EC4100B] gi|323183201|gb|EFZ68598.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli 1357] Length = 714 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFIATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|240169544|ref|ZP_04748203.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium kansasii ATCC 12478] Length = 693 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 173/708 (24%), Positives = 294/708 (41%), Gaps = 75/708 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + ++VL Q + + E I E R + + + L + Sbjct: 12 QFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENYYEREVLDQYSRNFVKSLLDRA 71 Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ +LG Y Y L +G R E + + V++ LA + A + Sbjct: 72 YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVSLTLAGGD---TTLAEQLV 128 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 129 DEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAL 188 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I +S GVIP +K+ D+ NQ G R+GA YL H D+ F Sbjct: 189 LLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRF 248 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-- 520 LD ++ D++ R ++ IPD+ + +N LFSP D+ +YG F Sbjct: 249 LDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSP---YDVERVYGVPFADIS 305 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y D I+ + I A ++ + + FE+G+P+I F+D N +P G + Sbjct: 306 VTEKYYEMVDNPRIRKTK-IKAREFFQTLAELQFESGYPYIMFEDTVNRANPI--DGKIT 362 Query: 581 SSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI + + CNLGS+N+ D A TI A Sbjct: 363 HSNLCSEILQVSTPSYFNEDLSYAKVGKDISCNLGSLNIAKT-----MDSPNFAQTIEVA 417 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + ++ ++ N+ AIGLG M L I Y S E ++ + Sbjct: 418 IRALTAVSDQTHITSVPSIEQGNNESHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYF 477 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAM 738 + +HA+ AS ++ ERG + F+ S + G F + E + E + Sbjct: 478 YTVLYHALRASNRISIERGTHFKGFERSKYASGEFFDKYTEQIWEPKTEKVRRLFAAADI 537 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797 + ++ W LK+ V+ G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 538 HIPTQDDWRRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEGKIG 597 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 ++ N+ + + A+EI +I Sbjct: 598 RVYYPAPYMTND-------------------------------NLEYYQDAYEIGYEKII 626 Query: 858 ESASRRQKWIDQAQSLNL-YLDEPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ + + +DQ SL L ++D + ++++ AW G+KT YY+R Sbjct: 627 DTYAAATQHVDQGLSLTLFFMDTATTREVNKAQIYAWRKGIKTLYYIR 674 >gi|325171198|ref|YP_004251299.1| ribonucleoside triphosphate reductase alpha chain [Vibrio phage ICP1] Length = 748 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 160/797 (20%), Positives = 301/797 (37%), Gaps = 79/797 (9%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFS 205 ++ +G + F++ +L + E A + V ++ K + D S D++ ALI S Sbjct: 5 TVIKSNGQEVPFDASKLNRMAEWADNL--GVGWSSLVLNAIKKVSDKCSTLDIQNALIDS 62 Query: 206 SRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVK 265 + + + AR L + + ++P LY Y I K Sbjct: 63 CAEKA--DKAHLAMAARLFLGTMYKNAHGGFEERP---------HLYDFYNNMLILGLWK 111 Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA 325 S +L YL L +++D +EY L+ L +Y +N +E PQ FM VA Sbjct: 112 E----MSYDATELEYLNEHLDHDKDLNYEYSVLKQLDSKYCKKLNDISMETPQYLFMGVA 167 Query: 326 MGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 M + E + V++Y LS TP L ++ L+SC + D + Sbjct: 168 MDIMENQPEDTRLDDVVKYYTYLSDLKINLPTPFLSGLRSKTKGLASCAVLKGDDTADSL 227 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ + G+G R + + K G +P+ + + A Q + Sbjct: 228 EAAIHNAYKQTVSNAGIGISLNC-RSIKDPVRNGAIKHTGKLPYYRYIQGSVGATKQEVR 286 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 G+ ++E+ L L+ T ++ ++ + L ++ ++ W L S Sbjct: 287 G-GSATVQFTALDPEIEDLLRLKHVTTVSEKQIRGLDYSFGACRLLAEKSSKGEDWYLMS 345 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 +++ Y + ++ + G K ++ I AV + + L +TG + T+ Sbjct: 346 QLHAPEVYKAYHENYDSLKQTLNDYILSG--KPYKTIKAVEVLKLYLKQRQDTGRMYSTW 403 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG----------SINLLAHFAN 613 D N +P ++SSNLC EI L + + ++ L+ Sbjct: 404 LDEANYHTPF--KEPIYSSNLCVEIFLPTKGFKDTGEMYTNDVENVQGEIALCFLSCIVA 461 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 + ++ + +DNVI + + S R++G+G+ AL + Sbjct: 462 GRVSEEEYEDVAYYTLLGVDNVISLMDYAFPNLSYSAQNRRSVGIGITNLAHALASKGLS 521 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y + E E S++ AS+ LA+E+G + + +G PID+ + Sbjct: 522 YKTLEGKNYMHRLAEMHSYYLHKASLRLAKEKGVAGWIGKTKYPEGWLPIDTYNKNVDRV 581 Query: 734 DELAMNRTSRLPWDELKKR-VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + R W+ L+K + G+RNS A P + + + + S+ P Q+ +K Sbjct: 582 ----HTQKLRFDWESLRKDIISAGGIRNSVLEATPPAESSSLVSSTTNSLYPIRQDYVIK 637 Query: 793 SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 SG V + I ++LK + A+EI Sbjct: 638 --KSGTTKV-----------------------------VFAAPDI-ENLKGKYEYAYEIP 665 Query: 853 PMWLIESASRRQKWIDQAQSLNLY-------LDEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +I+ + QK+ Q S +L+ ++ +L + A MG+K+ YY S Sbjct: 666 TKDMIDCYAIFQKFHGQGISADLWKDYSKYENEKIPMSELLNDFYYATKMGMKSWYYQNS 725 Query: 906 RSATSVEKSTLKGVDGK 922 +S E ST++ + Sbjct: 726 KSGIKQEGSTIEPDESS 742 >gi|323978714|gb|EGB73796.1| ribonucleotide reductase [Escherichia coli TW10509] Length = 714 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 173/706 (24%), Positives = 288/706 (40%), Gaps = 60/706 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDENVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRA 339 L +LG Y Y L + + + F RV M + A Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKHYL-EDFADRVTMVALTLAQGDKTLA 145 Query: 340 VEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSG 398 + + + S F +TPT N G R +L SCFL + D++ I A+ L+K G Sbjct: 146 TQLTDEMLSGRFQPATPTFLNCGKRQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGG 205 Query: 399 GLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHID 458 G+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H D Sbjct: 206 GVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPD 265 Query: 459 VEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF 518 + FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK F Sbjct: 266 ILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPF 322 Query: 519 -EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +IA + + E + I+A ++++ + FE+G+P+I ++D N +P G Sbjct: 323 ADIAISEHYDELVADERIRKKYINARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AG 380 Query: 578 VVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAVR 630 ++ SNLC+EI +S+ E + S NL + + D A T+ AVR Sbjct: 381 RINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVEIAVR 440 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 441 GLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYT 500 Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR---- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 501 ITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGNWQPKTAKVGELFARSGITL 560 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 561 PTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRV 620 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 F+ N + ++ A+EI +I++ Sbjct: 621 YYPAPFMTN-------------------------------ENLALYQDAYEIGAAKIIDT 649 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 650 YAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|71893571|ref|YP_279017.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae J] Length = 713 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 169/737 (22%), Positives = 296/737 (40%), Gaps = 99/737 (13%) Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + E ++ + +L L F ++G Y Y Sbjct: 47 FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 106 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L N + + + F RV + ++A + + F +TPT N+G + Sbjct: 107 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 165 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + SC+L V D++ I A+ + L+K GG+ + +R GA I ++ GV Sbjct: 166 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 225 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D+ NQ G+R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 226 IPVMKILEDSFSYANQLGQRQGAGAVYLNVHHPDILAFLDTKRENADEKIRIKSLSLGII 285 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542 IP++ + N LFS V D+ +Y K F E Y + EIK ISA Sbjct: 286 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISA 341 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597 L++ + + FE+G+P+I F+D N H V SNLC+EIT S+ Sbjct: 342 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLS 399 Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGS+N+ + D++++ A+ V+ D++ +K N Sbjct: 400 FKEIGKDICCNLGSLNIDKAMES-GPDFEEMVYYSVLALDVVSRNSDLSVA--PSIQKGN 456 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 + + AIGLG M L I Y S EA++ + ++F A AS +LA++ G +S Sbjct: 457 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 516 Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759 F+ + + G + + E+ + + ++ W L +++K G+ Sbjct: 517 FEKTKFASGEYFDKYTKVSPNTFVPKTHKIKELFAKYQVEIPTQKDWIHLVEKIKKTGIA 576 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS+ MAIAPT +I+ + + S+ P + ++ V S+ Sbjct: 577 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 622 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ K + A+E+ P+ +I S QK +DQA S+ L++ Sbjct: 623 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 666 Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + + + L+ Y A+ K+ YY+R R Sbjct: 667 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 695 Query: 938 LGIPSSCTSDTECEVCQ 954 + + C+ CQ Sbjct: 696 QDVLEDSENYETCQSCQ 712 >gi|167992528|ref|ZP_02573626.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205329296|gb|EDZ16060.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|312913830|dbj|BAJ37804.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 705 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + EG Sbjct: 6 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDD 65 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + ++ L +LG Y Y L +G R E + VA Sbjct: 66 AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 125 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 126 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 182 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 183 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 242 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 243 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 302 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 303 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 359 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 360 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 416 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 417 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 472 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 473 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 532 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 533 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 592 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 593 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 621 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 622 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 681 Query: 900 TYYLR 904 YY+R Sbjct: 682 LYYIR 686 >gi|324020304|gb|EGB89523.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 117-3] Length = 701 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 16 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 73 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 74 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 131 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 132 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 191 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 192 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 251 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 252 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 308 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 309 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 366 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 367 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 426 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 427 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 486 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + + EL Sbjct: 487 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 546 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 547 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 606 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 607 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 635 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 636 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 682 >gi|302340448|ref|YP_003805654.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta smaragdinae DSM 11293] gi|301637633|gb|ADK83060.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Spirochaeta smaragdinae DSM 11293] Length = 826 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 152/634 (23%), Positives = 263/634 (41%), Gaps = 61/634 (9%) Query: 311 GSRIEM-PQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +E P RVA G+A++E ++E+ F LL + F+ L +GT Sbjct: 78 DKPLETTPAQMIKRVASGIAMEETKEKREEWTERFRWLLEDWRFVPGGRILTGAGTDQNL 137 Query: 367 QLSSCFLTTVP-DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +C++ P D GI L + GG+G + T +R A++ G NG+S G + Sbjct: 138 TYYNCYVIPSPEDSRGGIIKTLGHMTEIMSRGGGVGINLTSLRPHHAYVKGVNGRSSGSV 197 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 + + + + QGG R+GA+ L WH D+ EF+ ++ G + + N + I Sbjct: 198 SWGALYSFVTGLIEQGGSRRGALMLILNVWHPDILEFISSKRQMG----QITNANISVGI 253 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FMK V ++ W L PD +D + +A + V+RK+ A + Sbjct: 254 TDDFMKAVKEDLDWELVFPDTNYPGYDKEWDG-----DFVAWKAAGKPVNVYRKVKAREI 308 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ + + P I F D N S + + +N C E L S VCNLG++ Sbjct: 309 WNSIIESAWASAEPGIFFVDRYNAMSNSGYYARIQCTNPCGEQGLPS----WGVCNLGAV 364 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 NL N D+D L T+R AVR LD+VID + E K+ + R +GLG MG Sbjct: 365 NLSRFANGNDVDWDNLGRTVRYAVRFLDDVIDNTPYFFEANKEQQLSERRVGLGTMGLAE 424 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 + L I Y S E+ D+ FI+ A +S + A+E+G++ F+ Sbjct: 425 LMIKLKIRYGSKESEAFLDKLYRFIAVEAYRSSSDTAKEKGSFPKFEA------------ 472 Query: 726 IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + + + +E+++++ G+RN + APT T + G S I+P Sbjct: 473 --------EPFLESGFMKGMPEEIRRKIAENGIRNVTLLTQAPTGTTGTMVGTSTGIEPY 524 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 Y + + G +++ ++DE ++ + + L Sbjct: 525 YFWEWERRGRMGS----------NIERVGVYDEWRKANPEA------------EQLPDYF 562 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +A ++ P ++ + Q+W+D + S + S ++ +Y + +G K R Sbjct: 563 VSAMDLSPEEHVKVQASIQRWVDSSISKTCNVPNQYSVEQTKQLYELMYDLGCKGGTIYR 622 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 S + K + K N V V Sbjct: 623 DGSRDEQVLNLKKEEEKKENPVEVKQIKPRVRPT 656 >gi|330466451|ref|YP_004404194.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora maris AB-18-032] gi|328809422|gb|AEB43594.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora maris AB-18-032] Length = 954 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 125/611 (20%), Positives = 226/611 (36%), Gaps = 28/611 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E A E +L F ++P FN GT Q+S+CF+ V D + I Sbjct: 106 GYFASPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILAVDDSMDSILD 165 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 166 WYKEEGLIFKGGSGSGVNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 224 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF+ + D R D + + V Sbjct: 225 RAAKMVILDVDHPDIEEFVVTKAREEDKIRALRDAGFDMDLGGADIVSVQYQNANNSVRV 284 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + G F++ R + + I A L+R + +E P + + Sbjct: 285 SDEFMTAVENGGGFDLR--------GRLDGQTIETIDAKKLFRTISQAAWECADPGLQYD 336 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 D N G + +SN C+E + + CNL S+NL+ + F+ +K Sbjct: 337 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVK 392 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I EK ++ +R +G+G + L +PY S + +A Sbjct: 393 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSDQGRSLA 452 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 ++ A S ELA GAY + + E++ A+ Sbjct: 453 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGTVATAVV 512 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 R + W + K G RNS +APT TI + + ++P + + K G Sbjct: 513 REATRQWTQGNKIGDKFGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 572 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L+ +E + + + G + + + + + A I Sbjct: 573 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 632 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q +I A S + + E + + ++ IY + W +GLK R Sbjct: 633 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 692 Query: 912 EKSTLKGVDGK 922 S K Sbjct: 693 PLSVAKPNKAA 703 >gi|320087213|emb|CBY96979.1| ribonucleoside-diphosphate reductase alpha chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 705 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 51 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 517 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686 >gi|312947210|gb|ADR28037.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli O83:H1 str. NRG 857C] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 177/732 (24%), Positives = 296/732 (40%), Gaps = 73/732 (9%) Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254 ++ L ++ +Y + A + L + K +A M + Sbjct: 5 TAERLTQETMDYHALNA---MLNLYDSAGRIQFDKDSQAVDAFMTTHVRPNSVAFSSQQQ 61 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 + EG + ++ L +LG Y Y L +G R Sbjct: 62 RLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + F RV M E A + + + S F +TPT N G + +L SCF Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCF 179 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKMLT 551 +NA LFSP D+ +Y K F A + + E + ++A ++++ Sbjct: 300 AKENAQMALFSP---YDVERVYSKPFADVAISEHYDELVADERIRKKYLNARDFFQRLAE 356 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + S Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDIS 414 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + + D A T+ TAVR L V D+ + ++ + N AIGLG M Sbjct: 415 CNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534 Query: 723 IDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 535 SQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISY 594 Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ +G F+ N Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 684 WRKGIKTLYYIR 695 >gi|145224884|ref|YP_001135562.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium gilvum PYR-GCK] gi|145217370|gb|ABP46774.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Mycobacterium gilvum PYR-GCK] Length = 701 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 163/680 (23%), Positives = 283/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E IE+ R + + + L + ++ ++G Y Y L +G Sbjct: 47 DEKLDYLIEKNYYEREVLDQYSRNFVKGLLDRAYAKKFRFPTFVGAFKYYTSYTLKTFDG 106 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + V++ LA + A + + + F +TPT NSG + + Sbjct: 107 KRYLERFEDRVVMVSLTLASGD---TTLAEKLVDEIMDGRFQPATPTFLNSGKKQRGEPV 163 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 164 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 223 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 224 LLEDSFSYANQLGARQGAGAVYLHAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDIT 283 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 284 FELAKKNEDMYLFSP---YDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 340 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I ++D N +P G + SNLC+EI + + Sbjct: 341 LAELQFESGYPYIMYEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 398 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI ++R L V D + ++ ++ N++ A Sbjct: 399 DISCNLGSLNIAKA-----MDSPDFAQTIEVSIRALTAVSDQTHIWSVPSIEQGNNSSHA 453 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E V+ + + +HA+ AS +A ERG + F+ S Sbjct: 454 IGLGQMNLHGYLARERIFYGSDEGVDFTNIYFYCVLYHALRASNRIAIERGTAFGGFEKS 513 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + + W +LK V+ G+ N N A+ Sbjct: 514 KYKSGEFFDKYTDQVWEPKTEKVRGLFADAGIRIPDQEDWKQLKASVQEHGIYNQNLQAV 573 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N Sbjct: 574 PPTGSISYINHSTSSIHPIASKVEIRKEGKIGRVYYPAPYMTN----------------- 616 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 617 --------------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTATTRD 662 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 663 VNKAQIYAWRKGIKTLYYIR 682 >gi|16766118|ref|NP_461733.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|585859|sp|Q08698|RIR3_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit alpha; AltName: Full=R1E protein; AltName: Full=Ribonucleotide reductase 2 gi|49258467|pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|49258468|pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|49258469|pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|49258470|pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium gi|109157244|pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|109157245|pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|1184247|emb|CAA51699.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421356|gb|AAL21692.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|267994923|gb|ACY89808.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|321223604|gb|EFX48669.1| Ribonucleotide reductase of class Ib aerobic, alpha subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332989684|gb|AEF08667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + EG Sbjct: 15 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDD 74 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + ++ L +LG Y Y L +G R E + VA Sbjct: 75 AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 312 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 542 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690 Query: 900 TYYLR 904 YY+R Sbjct: 691 LYYIR 695 >gi|62181311|ref|YP_217728.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128944|gb|AAX66647.1| ribonucleoside diphosphate reductase 2, alpha subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715797|gb|EFZ07368.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 173/680 (25%), Positives = 284/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ YGK F + + V + I+A ++ Sbjct: 297 FRLAKENVQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|216905874|ref|YP_002333502.1| ribonucleotide reductase subunit 1 [Equid herpesvirus 9] gi|216410028|dbj|BAH02446.1| large subunit of ribonucleotide reductase [Equid herpesvirus 9] Length = 790 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 153/648 (23%), Positives = 265/648 (40%), Gaps = 53/648 (8%) Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK--------------EKRAVEFYNLLS 347 + Y + G RIE FF+R+A E+ ++ L+ Sbjct: 141 EEMYLAKMRGGRIESMGQFFLRLATTATHYTMEQPAMARVVVSGEVGWTYIFKAYFTALA 200 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP + G ++SC+L V D + ++E + GG+G Sbjct: 201 GQVIIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAMLALMEEAGPILCNRGGIGMSLQ 260 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 G S+GV+ LK+ + +A+N G+R VC Y E WH D+ L++ Sbjct: 261 RFNT-----PPKEGCSRGVMALLKLIDSMTMAINSDGERPTGVCVYFEPWHADIRAILNM 315 Query: 466 R-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 R D+ R ++ W PDLF R + + D + Sbjct: 316 RGMLARDETVRCDNIFACMWTPDLFFDRYKRYLDGESGVMWTLFDDTASHLCHMYGKEFE 375 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ--QHVGVVHSS 582 E + I + ++ TG P++ FKD CN + + S Sbjct: 376 EEYERLELCGFGVDSIPIQDMAFIIVRSAVMTGSPFLMFKDACNKHYHFDLRRKSAIMGS 435 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANN--------QFDYDKLASTIRTAVRVLDN 634 NLCTEI ++ + VCNL SINL A FD+ L TA +++ Sbjct: 436 NLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTAGVPYFDFAALGRAAATATIFVNS 495 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 ++ + + K+++ +R++GLG+ G +A +L + ASPEA ++ + E + ++ Sbjct: 496 MMRASTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEARQLNKQIAERLLLNS 555 Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRV 753 + AS L + + F+ S + +G P D + +R W L+ + Sbjct: 556 MKASATLCRLGMQPFKGFEDSKYSRGELPFD---------AYPGVTLANRNAWRRLRTEI 606 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ- 812 K G+ NS +A PT + + + S+ P Y NL+ K +G+ N L+ ++ Sbjct: 607 KQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNVLLMRTIRSI 666 Query: 813 --RDLWDEAMISDLKYHDGSIGNIER-IP-DDLKKIHATAFEIDPMWLIESASRRQKWID 868 R+ +S L+ S+ +P TAFE D LI+ + R ++D Sbjct: 667 FPRECARLQALSTLEMAQWSVVGAFGDLPVGHPLSKFKTAFEYDQKTLIDMCADRAPFVD 726 Query: 869 QAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 Q+QS++L++ EP K+ + A+ GLKT YY + + AT+ Sbjct: 727 QSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKIKKATN 774 >gi|46981430|gb|AAT07701.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|94482187|gb|ABF21884.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482261|gb|ABF21957.1| large subunit ribonucleotide reductase [Human herpesvirus 3] Length = 775 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 155/650 (23%), Positives = 273/650 (42%), Gaps = 62/650 (9%) Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLA---------------LKETEKEKRAVE-FYNL 345 D Y + ++E FF+R+A + + + F+ Sbjct: 131 EDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDGYTWTDVCRVFFTA 190 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF--GALQENAMLAKYSGGLGND 403 L+ + +TP + G +SC+L G + + + GG+G Sbjct: 191 LACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITGDVGTVLQSRGGVGIS 250 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + + T +++G++ LK+ + +A+N +R VC Y+E WH+D++ L Sbjct: 251 LQSLN-----LIPTENQTKGLLAVLKLLDCMVMAINSDCERPTGVCVYIEPWHVDLQTVL 305 Query: 464 DLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEVSDLHDLYGK 516 R D+ R ++ W PDLF +R N WTLF + L L+G+ Sbjct: 306 ATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLFD-NRADILRTLHGE 364 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F Y ER E + + ++ TG P++ FKD CN Sbjct: 365 AFTSTYLRLER-----EGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQ 419 Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLD 633 G + SNLCTEI + + + VCNL SINL + F+ + L T RT V L+ Sbjct: 420 GNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLNDLQLTARTTVIFLN 479 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V+ +K+ K +R++G+G+ G + L S A + + E + + Sbjct: 480 GVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQIAELMLYE 539 Query: 694 AISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + S+E+ + G + F S + +G D + LPW L+ Sbjct: 540 TMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQD----------GFSTISYLDLPWCTLRD 589 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 + G+ NS +A+ PT + A + S+ P Y N++ K SG+ N L++EL+ Sbjct: 590 DICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELR 649 Query: 812 QRDLWDE---AMISDLKYHDGSI-GNIERIPDDLKKI-HATAFEIDPMWLIESASRRQKW 866 +E +I+ L+ + S+ + + + + + TAFE + L++ + R + Sbjct: 650 DMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMCAERAPF 709 Query: 867 IDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 IDQ+QS+ L+++E K+ + +A+ GLKT YY + R AT+ Sbjct: 710 IDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATN 759 >gi|9625894|ref|NP_040142.1| ribonucleotide reductase subunit 1 [Human herpesvirus 3] gi|132612|sp|P09248|RIR1_VZVD RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=Ribonucleotide reductase large subunit gi|259645275|sp|Q4JQV6|RIR1_VZVO RecName: Full=Ribonucleoside-diphosphate reductase large subunit; Short=R1; AltName: Full=Ribonucleotide reductase large subunit gi|60008|emb|CAA27902.1| ribonucleotide reductase (large subunit) [Human herpesvirus 3 strain Dumas] gi|46981501|gb|AAT07777.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|66866037|gb|AAY57685.1| ORF19 [Human herpesvirus 3] gi|66866109|gb|AAY57756.1| ORF19 [Human herpesvirus 3] gi|83721827|emb|CAI44862.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|90992818|gb|ABE03037.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|91980320|gb|ABE67127.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481817|gb|ABF21519.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481891|gb|ABF21592.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481965|gb|ABF21665.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482039|gb|ABF21738.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482113|gb|ABF21811.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482335|gb|ABF22030.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482409|gb|ABF22103.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482483|gb|ABF22176.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482557|gb|ABF22249.1| large subunit ribonucleotide reductase [Human herpesvirus 3] gi|111184727|gb|ABH08435.1| ribonucleotide reductase large subunit [Human herpesvirus 3] gi|157965776|gb|ABW06922.1| ribonucleotide reductase large subunit [Human herpesvirus 3] Length = 775 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 155/650 (23%), Positives = 273/650 (42%), Gaps = 62/650 (9%) Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLA---------------LKETEKEKRAVE-FYNL 345 D Y + ++E FF+R+A + + + F+ Sbjct: 131 EDFYLTKLEEGKLESLCQFFLRLAATVTTEIVNLPKIATLIPGINDGYTWTDVCRVFFTA 190 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIF--GALQENAMLAKYSGGLGND 403 L+ + +TP + G +SC+L G + + + GG+G Sbjct: 191 LACQKIVPATPVMMFLGRETGATASCYLMDPESITVGRAVRAITGDVGTVLQSRGGVGIS 250 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + + T +++G++ LK+ + +A+N +R VC Y+E WH+D++ L Sbjct: 251 LQSLN-----LIPTENQTKGLLAVLKLLDCMVMAINSDCERPTGVCVYIEPWHVDLQTVL 305 Query: 464 DLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQ------NAGWTLFSPDEVSDLHDLYGK 516 R D+ R ++ W PDLF +R N WTLF + L L+G+ Sbjct: 306 ATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLFD-NRADILRTLHGE 364 Query: 517 EFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F Y ER E + + ++ TG P++ FKD CN Sbjct: 365 AFTSTYLRLER-----EGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQ 419 Query: 577 GV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ--FDYDKLASTIRTAVRVLD 633 G + SNLCTEI + + + VCNL SINL + F+ + L T RT V L+ Sbjct: 420 GNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLNDLQLTARTTVIFLN 479 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V+ +K+ K +R++G+G+ G + L S A + + E + + Sbjct: 480 GVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQIAELMLYE 539 Query: 694 AISASVELAQERG--AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + S+E+ + G + F S + +G D + LPW L+ Sbjct: 540 TMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQD----------GFSTISYLDLPWCTLRD 589 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 + G+ NS +A+ PT + A + S+ P Y N++ K SG+ N L++EL+ Sbjct: 590 DICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELR 649 Query: 812 QRDLWDE---AMISDLKYHDGSI-GNIERIPDDLKKI-HATAFEIDPMWLIESASRRQKW 866 +E +I+ L+ + S+ + + + + + TAFE + L++ + R + Sbjct: 650 DMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMCAERAPF 709 Query: 867 IDQAQSLNLYLDE-----PSGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 IDQ+QS+ L+++E K+ + +A+ GLKT YY + R AT+ Sbjct: 710 IDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATN 759 >gi|308177565|ref|YP_003916971.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter arilaitensis Re117] gi|307745028|emb|CBT76000.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter arilaitensis Re117] Length = 712 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 177/674 (26%), Positives = 285/674 (42%), Gaps = 62/674 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E ++ R + + L ++ +LG Y Y L +G Sbjct: 60 DEKLEYLVKHEYYERETLDQYSMNFIRDLFKHAFGKKFRFETFLGAFKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + RV M EK A+ + + F +TPT N+G +L Sbjct: 120 KRYLERYED---RVCMVALHLARGDEKLALHLVDEIIEGRFQPATPTFLNAGKAQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ + L+K GG+ T +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIARAVNSSLQLSKRGGGVALSLTNLREHGAPIKQIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 LLEDSFSYANQLGARQGAGAVYLNAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDVT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547 + +N LFSP D+ +YG F E Y D IK + ISA ++ Sbjct: 297 FELARKNEDMYLFSP---YDVERVYGVPFSEISVTEKYYDMVDDARIKKTK-ISAREFFQ 352 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL----- 602 + + FE+G+P+I F+D N +P G + SNLC+EI SS+ E + Sbjct: 353 TLAEIQFESGYPYIMFEDTVNKANPI--AGRITMSNLCSEILQVSSASEFSDDLSYKTVG 410 Query: 603 --GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLG 659 S NL + D LA+++ A+R L V D++ ++ N AIGLG Sbjct: 411 KDISCNLGSMNIAKAMDGKDLATSVDIAIRALSAVSDMSYIASVPSIADGNRKSHAIGLG 470 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQ 718 M L HI Y S E ++ + I FHA++AS ++A ER + +F+ S + Sbjct: 471 QMNLHGFLAREHIYYGSEEGIDFTNIYFYTILFHALTASNKIAMERGETFDNFENSKYAS 530 Query: 719 GVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 G F + + VR+ M+ ++ W LK V G+ N N A+ PT +I Sbjct: 531 GEFFDKYTDQEWVPATERVRELFDGMHIPTQEDWKTLKASVMEHGIYNQNLQAVPPTGSI 590 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G ++ NE Sbjct: 591 SYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYMNNE---------------------- 628 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 NI+ + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 629 -NIDF--------YEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKAQI 679 Query: 891 QAWLMGLKTTYYLR 904 AW G+K+ YY+R Sbjct: 680 YAWRKGIKSLYYIR 693 >gi|301159372|emb|CBW18890.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131163|gb|ADX18593.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + EG Sbjct: 15 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDD 74 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + ++ L +LG Y Y L +G R E + VA Sbjct: 75 AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 312 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLHDD 541 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 542 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690 Query: 900 TYYLR 904 YY+R Sbjct: 691 LYYIR 695 >gi|256784770|ref|ZP_05523201.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces lividans TK24] gi|289768657|ref|ZP_06528035.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces lividans TK24] gi|289698856|gb|EFD66285.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces lividans TK24] Length = 967 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 120/632 (18%), Positives = 225/632 (35%), Gaps = 32/632 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E+F+ + + R D + + V ++ Sbjct: 243 VDHPDIEDFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVQ 302 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G +F R +V ++ A AL+RKM + P I + D Sbjct: 303 DGGKF--------GLTSRMTGEVIEEVDAKALFRKMAEAAWACADPGIQYDDTIKAWHTC 354 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ N FD ++ + + Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFDAERFSKVVELV 410 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 470 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ + S ELA G Y + + A+ ++ + Sbjct: 471 LMTGTSYRRSAELAAIVGPYDGYARNAKPHLRVMKQHSDENAKAVRMDDLDTPIWAAATE 530 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RNS IAPT TI + ++P + + K G +V Sbjct: 531 AWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + +G++ + + + ++ A I M + Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKPEHYEVFDCAMGERSISAMGHV 650 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + L E + + ++ +Y +AW MG+K R S Sbjct: 651 RMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 710 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 +T+ + + Sbjct: 711 TKTVKDTEKAEITEKTEAAIRETVEKVVEYRP 742 >gi|194737455|ref|YP_002115763.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301107|ref|ZP_02663780.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194712957|gb|ACF92178.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288514|gb|EDY27891.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|312162815|ref|YP_003933800.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1] gi|308096448|gb|ADO13788.1| ribonucleotide reductase subunit 1 [Saimiriine herpesvirus 1] Length = 1048 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 171/658 (25%), Positives = 274/658 (41%), Gaps = 62/658 (9%) Query: 291 FAFEYLGLQILYDR---YFLHINGSRIEMPQAFFMRVAMGLALKETE----------KEK 337 +A + GLQ Y R+E + R+A LA E + Sbjct: 398 YALKNRGLQSALKYEEFYLRPWGNGRLESVSQMYTRIAGALATGAREIPEIGTVALGRTG 457 Query: 338 RAVE----FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYGIFGALQENA 391 ++ F++ L S + STP + G R SSC+L D I Sbjct: 458 EWIDLFAYFFDALVSHAIVPSTPAMLYLGGRQRYTSSCYLVNPQRTDSAGVIDAITHNVG 517 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 + GG+G G V+P LK+ + A N G R VC Y Sbjct: 518 DILARHGGIGLSIQSFNG-----------GSSVMPALKLLDSLVAAHNAGSHRPTGVCVY 566 Query: 452 LETWHIDVEEFLDLRKNTG-DDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSP 504 LE WH DV L +R ++ RR ++ +A W+PDLF KR+ + WTLF Sbjct: 567 LEPWHTDVMAVLRMRGLLAGEEARRCDNIFSAMWMPDLFFKRLIRYMEGERGVMWTLFDG 626 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 S L +G EFE YE E ++ L ++ TG P++ FK Sbjct: 627 AAGSALSAHHGAEFERLYEKMEEAG----GSALTRLPIQDLAFAIVRSAASTGSPFVMFK 682 Query: 565 DPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLAS 623 D CN G + SNLCTEI + + + VCNL S+NL + F +++L Sbjct: 683 DACNRHYLYDTQGSAISCSNLCTEIVHPADARSSGVCNLASVNLAECVEDGAFSFERLRR 742 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 +R V +++ +ID ++ ++ + R++G+G+ G +A L + +SPE E+ Sbjct: 743 AVRACVLMVNVMIDTTRTPNQRCQRGHDRLRSMGIGMQGLHTACLRLGLDMSSPEFRELN 802 Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 E E + A+ AS +L ++ FK S++ +G F + Sbjct: 803 AEIAEVMLLAAMQASNDLCVAGLPPFADFKRSVYSEGRFHWE---------GFAHARPKH 853 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L++RV G+RNS +A+ PT + + + S+ P + N++ K +G+ Sbjct: 854 SDEWARLRQRVVRHGLRNSQFIALMPTVSSSQVSESSEGFAPVFTNMFSKVGRAGETLRP 913 Query: 803 NSFLVNELKQR--DLWDEAMISDLKYHDGSI-GNIERI-PDDLKKIHATAFEIDPMWLIE 858 N L+ + + E + L+ + + PD + TAFE D LI+ Sbjct: 914 NLLLLEAVHEAFGGAALERALDRLEDAQWCVARAFPCLAPDHPLRRFKTAFEYDQTLLID 973 Query: 859 SASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 + R ++D +QS+ LY+ E S L + A+ GLKT YY + R AT+ Sbjct: 974 LCADRAPYVDHSQSMTLYVTEASDGTLPASALTRLLVHAYKRGLKTGMYYCKVRKATN 1031 >gi|207858076|ref|YP_002244727.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709879|emb|CAR34232.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + EG Sbjct: 15 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 74 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + ++ L +LG Y Y L +G R E + VA Sbjct: 75 AVLARYNRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 +V YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 312 YDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 542 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690 Query: 900 TYYLR 904 YY+R Sbjct: 691 LYYIR 695 >gi|56414766|ref|YP_151841.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363694|ref|YP_002143331.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205360153|ref|ZP_02834878.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|56129023|gb|AAV78529.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095171|emb|CAR60720.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205340774|gb|EDZ27538.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|209920119|ref|YP_002294203.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SE11] gi|293448993|ref|ZP_06663414.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|331678653|ref|ZP_08379327.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] gi|209913378|dbj|BAG78452.1| ribonucleoside-diphosphate reductase alpha subunit [Escherichia coli SE11] gi|291322083|gb|EFE61512.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|324120034|gb|EGC13911.1| ribonucleotide reductase [Escherichia coli E1167] gi|331073483|gb|EGI44804.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli H591] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDATL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPNFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASSEYFSQYLQGNWQPKTTKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|294505969|ref|YP_003570027.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter ruber M8] gi|294342297|emb|CBH23075.1| Ribonucleoside-diphosphate reductase large chain [Salinibacter ruber M8] Length = 560 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 158/630 (25%), Positives = 248/630 (39%), Gaps = 113/630 (17%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 L Y L G P+ +A A FY ++ ++ Sbjct: 18 LNDEARTFLRRGYLLEGTG-----PEDRVREIAEHAEGLLEMD-GFADRFYEYMARGYYS 71 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P N G SCF + + D + I E M+ K GG + VR GA Sbjct: 72 LASPVWANFGLDRGLPISCFGSYIDDSMEAILDTHAEVGMMTKVGGGTSGYFGDVRPRGA 131 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I NG S G PF ++ + V+QG R+G Y++ H DVEE+L+++ + Sbjct: 132 SI-TNNGTSNGTYPFAQLFDKIINVVSQGETRRGHFAGYIDIEHPDVEEWLNIQT----E 186 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 M + D +M+ + Sbjct: 187 GDAIQTMMYGVVVGDDWMEAMIDGDS---------------------------------- 212 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEIT 589 ALW K++ G P+I F+ PQ + VH+SNLC+E+ Sbjct: 213 --------DKRALWAKVVESRMNLGIPYILFRGNVQDGRPQVYKDKGYDVHASNLCSEVL 264 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TI 643 L S +E+ VC L S+N L +D K + T + LD V+ + Sbjct: 265 LPSGPDESFVCCLSSMNAL------HYDDWKDTDAVETLTQFLDAVMQEFIDGAKGMAHM 318 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 ++A + HRAIG+G++G+ S L IP+ S EA E + I + +AS ELA Sbjct: 319 DRAVRFAERHRAIGIGILGWHSYLQSNRIPFESAEASLTGAEIAKTIKERSYAASAELAD 378 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 G +G G RN+ Sbjct: 379 RFGEPPVLEG------------------------------------------YGRRNATT 396 Query: 764 MAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 MA+APT + + I G VS SI+P N +V+ T N L L+++ +A+ Sbjct: 397 MAVAPTKSSSFILGQVSPSIEPIKSNYFVQDRAKMKVTYKNPHLKALLQEKGRDTDAVWD 456 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD--EP 880 ++ DGS+ +++ + D+ K + T EI M +I+ A+ RQK IDQ+QSLNL +D Sbjct: 457 EIALRDGSVQHLDFLSDEEKDVFKTFSEISQMAIIDQAAGRQKHIDQSQSLNLAIDPGST 516 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 K ++ +Y +AW G+K+ YY +A Sbjct: 517 PVKDINRLYVEAWKKGVKSLYYQHGVNAAQ 546 >gi|218701170|ref|YP_002408799.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli IAI39] gi|218371156|emb|CAR18987.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli IAI39] Length = 714 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 288/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFHDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|257373021|ref|YP_003175795.1| ribonucleotide-diphosphate reductase subunit alpha [Halomicrobium mukohataei DSM 12286] gi|257167745|gb|ACV49437.1| ribonucleoside-diphosphate reductase, alpha chain [Halomicrobium mukohataei DSM 12286] Length = 564 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 157/636 (24%), Positives = 261/636 (41%), Gaps = 112/636 (17%) Query: 302 YDRYFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 D G IE + +A + + + A +FY+ +S + ++P Sbjct: 24 EDSRAFLDEGYLIEGVTAEERVREIAERAE-EILDDDGFADKFYDYMSRGFYSLASPVWS 82 Query: 360 NSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 N G SCF + + D++ I E + K GG + +R G+ I NG Sbjct: 83 NFGLDRGLPISCFGSYMEDNMESILYTQAEVGEMTKLGGGTSGYFGEIRPRGSPI-TNNG 141 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDM 479 KS G F ++ + V+QG R+G Y++ H D++E+L+++ + D+ Sbjct: 142 KSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDVEHDDLDEWLNIKT----EGDPVQDI 197 Query: 480 NTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 I D + + + E Sbjct: 198 YYGVIIGDDWFRAMVDGDE--------------------EKR------------------ 219 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV---VHSSNLCTEITLNSSSEE 596 W +++ G P+I F+D N PQ + ++ SNLCTEI L ++ +E Sbjct: 220 ----ETWAEIIETRINIGVPYIIFRDNMNDGKPQVYKDRGYEINGSNLCTEIALPATPDE 275 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH------TIEKAKKSN 650 + VC L S+N L +D K + T R LD VI+ +E+ + Sbjct: 276 SFVCCLSSMNAL------HYDEWKDTDAVETLTRFLDAVIEEFIQEAEGTQFMERPVRFA 329 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 HRA+G+G++G+ S L IP+ S EA+E + I + S LA E G Sbjct: 330 KRHRAVGIGVLGWHSYLQSEMIPFDSMEAMEKNEAIFRTIKERSYEESRRLADEFGEPEV 389 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 +G G RN+ M++APT Sbjct: 390 LEG------------------------------------------YGRRNATTMSVAPTK 407 Query: 771 TIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 + + I G VS SI+P N +V+ T N FL LK+R + + + +DG Sbjct: 408 SSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNRFLEAILKERGRDEREVWDSIAQNDG 467 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDF 887 S+ +++ + D+ K++ T EI M +I A++RQK IDQAQSLN+ + E S K+++ Sbjct: 468 SVQHLDCLTDEEKEVFKTFAEIPQMAIINQAAQRQKHIDQAQSLNVSIDPSEVSVKEINQ 527 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 +Y +AW G+K+ YY S +A +K + ++ K Sbjct: 528 LYIEAWKKGVKSLYYQHSVNA--AQKFSRDILECKA 561 >gi|9629835|ref|NP_045319.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 1] gi|1710388|sp|P50646|RIR1_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|995643|emb|CAA90929.1| UL39 [Bovine herpesvirus 1] gi|1149579|emb|CAA88900.1| UL39 [Bovine herpesvirus 1] gi|2653308|emb|CAA06094.1| ribonucleotide reductase large subunit [Bovine herpesvirus type 1.1] Length = 787 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 159/654 (24%), Positives = 265/654 (40%), Gaps = 59/654 (9%) Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALK-------------ETEKEKRAVEFY-NLLS 347 + Y + G IE FF+R+A A E Y L Sbjct: 142 EEMYLAKLEGGAIESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAVFNAYLTALY 201 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP + +G L+SC+L V + E A + GG+G + Sbjct: 202 RQLVVPATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLNRGGIGISFQ 261 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 + G++ LK+ + A+A+N +R +C YLE WH DV L++ Sbjct: 262 SFDRAVSRDCKR-----GIMGALKLLDSMAMAINSDSERPTGICVYLEPWHCDVRAVLNM 316 Query: 466 RKNT-GDDRRRTHDMNTANWIPDLFMKRVTQN-----AGWTLFSPDEVSDLHDLYGKEFE 519 R D+ R ++ + W+PDL R + D S L L+G F Sbjct: 317 RGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLFDDRASHLSRLHGPAFT 376 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578 YE ER E + L ++ + TG P++ FKD CN G Sbjct: 377 AEYERLER-----EGLGVETVPVQDLAFLIVRSIVMTGSPFVMFKDACNRHYHMDTAGDA 431 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLD 633 + SNLCTEI +S + VCNL S+NL + FD+ L++ TA ++ Sbjct: 432 LTGSNLCTEIVQRASPDAHGVCNLASVNLPRCVREGEGGALAFDFAALSTAAATAAIFVN 491 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 ++ + EKA + HR++G+G G + L L + SP A + E E + Sbjct: 492 AMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLNVEIAERLLLA 551 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 ++ S L + + F S + +G+ P D + + W L+++ Sbjct: 552 VMATSATLCEYGCAPFEDFARSKFARGLMPFD---------GYEGVVLSLPRAWARLREK 602 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V G+ N+ +A+ PT + + + S+ P + N++ K MSG+ N L+ L++ Sbjct: 603 VARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLPLMRALRK 662 Query: 813 RDLWDEAM---ISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + L S+ + P TAFE D LI+ + R ++ Sbjct: 663 HFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERLIDLCADRAPFV 722 Query: 868 DQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 DQ+QS++L++ EP ++ + A+ GLKT YY + R AT+ T Sbjct: 723 DQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNNGVFT 776 >gi|90962207|ref|YP_536123.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus salivarius UCC118] gi|90821401|gb|ABE00040.1| Ribonucleoside-diphosphate reductase alpha chain [Lactobacillus salivarius UCC118] Length = 723 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 285/712 (40%), Gaps = 76/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 E L + K + + E I+ + L + LK E Sbjct: 34 EEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y +Y L + + + + F RVA EK A+E + L Sbjct: 92 DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150 Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + + + Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 RG GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL +K Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD + + V +N LF P V ++ +I E Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 A+ K + I A L ++ + E+G+P++ D N G + SNLC+E Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386 Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I + +E V S NL + N ++ R L V D + Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + N IGLG MG + L I Y SPEA+E +++ + AS Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506 Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750 ++A+ER + +F+ S + G + + + E+ D + + ++ W LK Sbjct: 507 KIAKERKVTFDNFENSKYADGRYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809 + V G+ + N +A+AP +I+ I + S+ P + + G +L N Sbjct: 565 ENVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + +A++ D +I++ + Q+ +DQ Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653 Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + L + A G+K+ YY+R+ Sbjct: 654 GMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705 >gi|323529940|ref|YP_004232092.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1001] gi|323386942|gb|ADX59032.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1001] Length = 859 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 142/611 (23%), Positives = 249/611 (40%), Gaps = 76/611 (12%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 F RVA G+A E + +VE F + L L +CF+ Sbjct: 46 SADDVFRRVARGVAEAEPAALRESVEALFVDNLRHGALGAGRIMSAAGTGIAATLINCFV 105 Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D + G I+ AL + A + GG+G +++ +R GA + T+ + G Sbjct: 106 QPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNFSAIRPKGARVRTTSSSASGPC 165 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + + Sbjct: 166 SYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIEAKHSKG----RWNNFNVSVGV 221 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V ++ W L E S G + + V+ + A + Sbjct: 222 TDEFMRAVEEDEPWQLVHRAEPSPALRAAGDV----------RQREDGMWVYSERPAREI 271 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +++ ++ P I F N + + V + ++N C E L + CNLG + Sbjct: 272 WERIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 327 Query: 606 NLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL + FD+D LA RT VR LDNV+D+ + + + R I Sbjct: 328 NLTRFVLDPFAQMKGGKPSFDWDGLAQRTRTQVRFLDNVLDVTLWPLPQQYDESRAKRRI 387 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G L +L + Y S E + A + A ASVELA+ERGA+ F + + Sbjct: 388 GVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAYRASVELAKERGAFPLFDAARY 447 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 L + +++K+ ++ G+RNS+ ++IAPT T++ Sbjct: 448 -------------------LETGTFASRLPEDIKEAIRRDGIRNSHLLSIAPTGTVSLAF 488 Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 S I+P++ Y + ++ + + E L G G++ Sbjct: 489 ADNASNGIEPAFSWTYTRMK-----------VMADGGRESFDVEDYAYRLYRELG--GDV 535 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893 R+PD +A E+ ++ + Q ++D + S + + + + + +Y AW Sbjct: 536 NRLPD----YFVSALEMSARDHLDMMAAVQPYVDTSISKTVNVPADYPFEAFESLYLDAW 591 Query: 894 LMGLKTTYYLR 904 GLK R Sbjct: 592 KSGLKGLATYR 602 >gi|261247948|emb|CBG25781.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 714 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 177/725 (24%), Positives = 294/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + E Sbjct: 15 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREEYYDD 74 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + ++ L +LG Y Y L +G R E + VA Sbjct: 75 AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 312 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 542 WQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690 Query: 900 TYYLR 904 YY+R Sbjct: 691 LYYIR 695 >gi|197264971|ref|ZP_03165045.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243226|gb|EDY25846.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 705 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 294/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + EG Sbjct: 6 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 65 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + + L +LG Y Y L +G R E + VA Sbjct: 66 AVLARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 125 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 126 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 182 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 183 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 242 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 243 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 302 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 303 ---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 359 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 360 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 416 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 417 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 472 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 473 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 532 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 533 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 592 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 593 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 621 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 622 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 681 Query: 900 TYYLR 904 YY+R Sbjct: 682 LYYIR 686 >gi|152971533|ref|YP_001336642.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956382|gb|ABR78412.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 693 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 165/637 (25%), Positives = 273/637 (42%), Gaps = 68/637 (10%) Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L +E + VA+ LA + E++A + + S F Sbjct: 80 TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLARGD---EQQARQLTEEILSGRF 136 Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N+G + +L SCFL + D++ I A+ L+K GG+ + +R Sbjct: 137 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 196 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GV+P +K+ D NQ G R+GA +L H D+ FLD R+ Sbjct: 197 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 256 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529 D++ R ++ IPD+ + ++A LFSP D+ LYGK F A + Q Sbjct: 257 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 313 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579 E R I A L++++ + FE+G+P+I F+D N SP + V Sbjct: 314 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 373 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 + + E + E CNLGS+N+ D TI TAVR L V D+ Sbjct: 374 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 428 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ N AIGLG M L I Y SPE ++ + +++HA+ S Sbjct: 429 HIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 488 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749 ++LA+ER ++ F+ S + G + + + + E ++ R W +L Sbjct: 489 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQL 548 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 + V G+ N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 549 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 608 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ A+EI P +I++ + + +D Sbjct: 609 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 637 Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 Q SL L+ + + + ++ AW G+KT YY+R Sbjct: 638 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 674 >gi|281413956|ref|ZP_06245698.1| ribonucleotide-diphosphate reductase subunit alpha [Micrococcus luteus NCTC 2665] Length = 693 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 175/679 (25%), Positives = 281/679 (41%), Gaps = 79/679 (11%) Query: 258 RYIEEGVKARLLHESMMDFDLVY--LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313 Y+++ F+ V K + F F +LG Y Y L +G R Sbjct: 43 DYLQKNDYYETETFEQYPFEFVRGLFDRAYKAK--FRFPTFLGAFKFYTSYALKTFDGKR 100 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + VA+ LA + E V + + + F +TPT NSG + +L SC Sbjct: 101 YLERYEDRVAVVALHLARGDQELATHLV---DEMIAGRFQPATPTFLNSGKKQRGELVSC 157 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I + L+K GG+ T +R GA I +S GVIP +K+ Sbjct: 158 FLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLL 217 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 218 EDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 277 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 +N LFSP D+ +YG F E Y D IK + ISA ++ + Sbjct: 278 LAKKNEDMYLFSP---YDVERVYGVPFSEISVTEKYYEMVDDARIKKTK-ISAREFFQTI 333 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P++ F+D N +P G + SNLC+EI + + Sbjct: 334 AEIQFESGYPYVVFEDTVNAANPI--KGRITMSNLCSEILQVSEASEYNEDLSYAHVGQD 391 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D ++ TA+R L V + + ++ K N AI Sbjct: 392 ISCNLGSMNIAKT-----MDSPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAI 446 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L H+ Y S E ++ + + FHA+ AS +A E + F+ S Sbjct: 447 GLGQMNLHGYLAREHVHYGSEEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSK 506 Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G F +AE+ + + ++ W ELK V G+ N N A+ Sbjct: 507 YASGEFFDKYTDQEWAPATERVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVP 566 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +L N Sbjct: 567 PTGSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTN------------------ 608 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + + A+EI +I++ + + +DQ SL L+ + + + L Sbjct: 609 -------------ENLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDL 655 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 656 NRAQIYAWRKGIKTIYYIR 674 >gi|170683654|ref|YP_001744826.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli SMS-3-5] gi|170521372|gb|ACB19550.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli SMS-3-5] Length = 714 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 171/707 (24%), Positives = 290/707 (41%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADVAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ + + S NL + + D A T+ TAV Sbjct: 380 GRINMSNLCSEILQVNSASDYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMN 739 I++HA+ S+ LA+ER ++ FK S + G + + + + + Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGVT 559 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMCYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|222034375|emb|CAP77116.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Escherichia coli LF82] Length = 701 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 170/673 (25%), Positives = 280/673 (41%), Gaps = 60/673 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 + + EG + ++ L +LG Y Y L +G Sbjct: 48 QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 R + F RV M E A + + + S F +TPT N G + +L SC Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550 +NA LFSP D+ +Y K F A + + E + ++A ++++ Sbjct: 286 LAKENAQMALFSP---YDVERVYSKPFADVAISEHYDELVADERIRKKYLNARDFFQRLA 342 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + + D A T+ TAVR L V D+ + ++ + N AIGLG M Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMN 460 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520 Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 521 FSQYLQGNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580 Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ +G F+ N Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY 669 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 670 AWRKGIKTLYYIR 682 >gi|225869035|ref|YP_002744983.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. zooepidemicus] gi|225702311|emb|CAX00108.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus equi subsp. zooepidemicus] Length = 724 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 165/748 (22%), Positives = 305/748 (40%), Gaps = 78/748 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L ++ + + + ++ + ++ Sbjct: 29 KEAVQRYLEEHVYPQSLSFDSLEEKW-RYLVAHDYYDQEILKAYSAECITEAFTYAYQQK 87 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 +G Y Y L + + F R M + + + S Sbjct: 88 FSFLSLMGAMKFYQSYALKSLDGSQYL-EHFEDRAVMNALFLANGDPDLVRDLIDQILSR 146 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F +TPT N+G + + SC+L + D++ I A+ + L+K GG+ T +R Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLR 206 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G+ I G ++ G++P +K+ D+ NQ G+R+GA YL H ++ FLD ++ Sbjct: 207 EVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFLDTKRE 266 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R + IPD+ + +N LFSP D+ +YGK+ E Sbjct: 267 NADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAITEEYD 323 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + + ISA L++ + + FE+G+P++ F D N R+P G + SNLC+E Sbjct: 324 RLVANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVMSNLCSE 383 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I S++ E CNLGSIN+ + +++L +T A+ + Sbjct: 384 IAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAAG-FEQLIATSIRALDHVSRA 442 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D++C +K N + A+GLG M L HI Y S EAV+ D ++++A Sbjct: 443 SDVSCA--PSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSAEAVDFTDLFFHTMAYYAF 500 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747 AS +LA+E+GA++ F+ S + G + + A+ + R W Sbjct: 501 KASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYGFRVPSVADWQ 560 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 EL ++ G+ N++ MA+APT +I+ + + S+ P + V+ V ++ Sbjct: 561 ELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHLGRIYVPAY-- 618 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866 +I DD + A+E+ P +I + QK Sbjct: 619 ----------------------------QISDDNYAYYERGAYEVGPEPIINIVAAAQKH 650 Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 +DQA SL L++ + + + L+ Y A+ + + YY+R R + Sbjct: 651 VDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR----------------QDV 694 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + + S C+ C Sbjct: 695 LEGSEQYEEDTIVPFTDTNASGEACQSC 722 >gi|205360490|ref|ZP_02684058.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349046|gb|EDZ35677.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 714 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 284/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + + L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP D+ YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|168464073|ref|ZP_02697990.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|238909578|ref|ZP_04653415.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|195633333|gb|EDX51747.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 705 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 51 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 517 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686 >gi|257069612|ref|YP_003155867.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Brachybacterium faecium DSM 4810] gi|256560430|gb|ACU86277.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Brachybacterium faecium DSM 4810] Length = 710 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 169/680 (24%), Positives = 284/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +E + E + L+ ++ +LG Y Y L +G Sbjct: 56 REKMDYLVENKYYEADVLEQYDFSFIESLSEQAYAKKFRFPTFLGAFKYYTSYTLKTFDG 115 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+GLA + E+ A + + F +TPT N+G +L Sbjct: 116 ERYLERFEDRVVMVALGLAQGD---EQLARNLVDEILDGRFQPATPTFLNAGKAQRGELV 172 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K Sbjct: 173 SCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREYGAPIKHIENQSSGVIPVMK 232 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 233 LLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 292 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRK 548 + QN LFSP D+ YGK F + R+ +KI A ++ Sbjct: 293 FELAKQNEPMYLFSP---YDVEREYGKPFADVNVSEVYREMVDNPNISKKKIQARDFFQN 349 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G V SNLC+EI Sbjct: 350 LAEIQFESGYPYIMFEDTVNRANPI--AGKVTHSNLCSEILQVSTPSSMNVDLTYDEMGR 407 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A +I TA+R L V D + ++ + N A Sbjct: 408 DISCNLGSLNIAKA-----MDSPDFAQSIETAIRGLTAVSDTSDIESVPTIAEGNRKSHA 462 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L + Y S E ++ + +++HAI AS+++A+ER + F+ S Sbjct: 463 IGLGQMNLHGYLARERVFYGSEEGLDFTNMYFYSVTYHAIKASMKIAKERGEKFYDFENS 522 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + I + E + + + ++ W +L+ V GM N+ A+ Sbjct: 523 KYATGEYFDKYIDQVWEPKTEKVRGLFADSNAHLPTQEDWKQLRDEVAEHGMYNAYLQAV 582 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 583 PPTGSISYINHSTSSIHPIVSQIEIRKEGKIGRVYYPAPYMTND---------------- 626 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ ++ + +DQ SL L+ + + + Sbjct: 627 ---------------NLEYYEDAYEIGYEKIIDTYAQATQHVDQGLSLTLFFKDTATTRD 671 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 672 VNRAQIYAWRKGIKTLYYIR 691 >gi|25028979|ref|NP_739033.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium efficiens YS-314] gi|23494266|dbj|BAC19233.1| ribonucleotide reductase alpha chain [Corynebacterium efficiens YS-314] Length = 721 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 158/681 (23%), Positives = 272/681 (39%), Gaps = 74/681 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LH 308 E +E + + + +D Y+ + K + F + Y Y Sbjct: 67 HEKLDYLVENNYYEKEV---LDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKT 123 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + RV M + A + + + F +TPT NSG Sbjct: 124 FDGRRYLERFED---RVCMVALTLADGDRETANALVDEIMTGRFQPATPTFLNSGKAQRG 180 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 + SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP Sbjct: 181 EPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIP 240 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 241 VMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIP 300 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545 D+ + +N LFSP D+ +YGK F + ++ + I+A Sbjct: 301 DITFELAKRNDDMYLFSP---YDVERIYGKPFADISVTELYNEMVDDDRIRKTKINARQF 357 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSE 595 ++ + + FE+G+P+I F+D N +P + V + + E Sbjct: 358 FQTLAEIQFESGYPYIMFEDTVNEANPIEGRVTHSNLCSEILQVSTPSTYHEDLSYDEVG 417 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654 E CNLGS+N+ D + TI TA+R L V + + ++ +K N Sbjct: 418 EDISCNLGSLNIAMAM-----DSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAH 472 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 AIGLG M L HI Y S E ++ + + + + AS ++A+ER +++F+ Sbjct: 473 AIGLGQMNLHGYLGREHIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFEN 532 Query: 714 SLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 S + GV+ + E+ ++ + W +LK V G+ N A Sbjct: 533 SDYASGVYFDRFDPAEFAPKTDKVKELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQA 592 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT +I+ I + SI P + ++ G + N+ Sbjct: 593 VPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND--------------- 637 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 + A+EI +I++ + K++DQ SL L+ + + + Sbjct: 638 ----------------NLEYFQDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTR 681 Query: 884 KLDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 682 DINRAQIYAWRKGIKTLYYIR 702 >gi|15827932|ref|NP_302195.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium leprae TN] gi|221230409|ref|YP_002503825.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium leprae Br4923] gi|13093485|emb|CAC30687.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium leprae] gi|219933516|emb|CAR71829.1| ribonucleoside diphosphate reductase [alpha] chain [Mycobacterium leprae Br4923] Length = 693 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 170/708 (24%), Positives = 286/708 (40%), Gaps = 75/708 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 + ++VL Q + + E I E R + + + L + Sbjct: 12 QFDKDVLAARQFFLQHVNQNTVFFHNQDEKLDYLIRENYYEREVLDQYSRNFVKSLLDRA 71 Query: 286 KYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ +LG Y Y L +G R E + VA+ LA + A + Sbjct: 72 YAKKFRFSTFLGAFKYYTSYTLKTFDGKRYLERLEDRVCMVALTLAAGD---TGLAEKLV 128 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT NSG + + SCFL + D++ I ++ L+K GG+ Sbjct: 129 DEIIDGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVAL 188 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ F Sbjct: 189 LLSNIREHGAPIKNIEHQSSGVIPIMKLLEDAFSYANQLGARQGAGAVYLHAHHPDIYRF 248 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG--KEFEI 520 LD ++ D++ R ++ IPD+ + +N LFS +V ++++ Sbjct: 249 LDTKRENADEKIRIKTLSLGVIIPDITFELAKRNEDMYLFSSYDVERVYEVPFADISVTE 308 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 Y A + K I A ++K+ + FE+G+P++ F+D N +P G + Sbjct: 309 KYYEMLDDARIRKTK----IKAREFFQKLAELQFESGYPYVMFEDTVNRANPI--EGKIT 362 Query: 581 SSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI + + CNLGS+N+ D A T+ A Sbjct: 363 HSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIAKT-----MDSPDFAQTVEVA 417 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D + ++ ++ N+ AIGLG M L I Y S E V+ + Sbjct: 418 IRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGYLSREGIFYGSEEGVDFTNIYF 477 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAM 738 + FH + AS +A ERG + F+ S + G F I E + E A+ Sbjct: 478 YTVLFHVLLASNSIAIERGTFFKGFERSKYASGEFFDKYIEQTWEPKTDKVRQLFAEAAI 537 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797 ++ W LK+ V G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 538 RIPTQNDWKRLKELVVAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEGKIG 597 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 ++ N+ + + A+EI +I Sbjct: 598 RVYYPAPYMTND-------------------------------NLQYYQDAYEIGYQKII 626 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 627 DTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIR 674 >gi|168233768|ref|ZP_02658826.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470517|ref|ZP_03076501.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456881|gb|EDX45720.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332204|gb|EDZ18968.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 705 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 51 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNIYFYTITWHAVHTSMRLARERGKTFAGFAQS 517 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 667 INKAQIYAWRKGIKSLYYIR 686 >gi|259907589|ref|YP_002647945.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] gi|224963211|emb|CAX54695.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia pyrifoliae Ep1/96] gi|283477431|emb|CAY73347.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia pyrifoliae DSM 12163] Length = 716 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 163/638 (25%), Positives = 269/638 (42%), Gaps = 60/638 (9%) Query: 289 RDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 R +LG Y Y L +G R + F RV M + A+ + + Sbjct: 98 RFRFQTFLGAWKFYTSYTLKTFDGKRY--LEGFTERVCMVALTLAKGDQPLALALTDEIL 155 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 156 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 215 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 216 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDTK 275 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R ++ IPD+ + N LFSP +V ++ L F + + Sbjct: 276 RENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYAL---PFADISMSEK 332 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + ++ R I+ ++ + + FE+G+P+I F+D N +P G ++ SNLC Sbjct: 333 YPEMLADTRIRRTFINPREFFQTLAEIQFESGYPYIMFEDTVNRANPVP--GRINMSNLC 390 Query: 586 TEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +EI +S E S NL + + D A T+ AVR L V D Sbjct: 391 SEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNVAHAMDSADFARTVEIAVRGLTAVSDQ 450 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + H++ ++ N AIGLG M L I Y S ++ + +++HA+ Sbjct: 451 SHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVTYHALRT 510 Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDE 748 S +LA+ER +S F S + G + +G R + S+ W Sbjct: 511 SNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPSQQQWQA 570 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 LK+ V G+ N N AI PT +I+ I + SI P + ++ +G F+ Sbjct: 571 LKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMN 630 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ + ++ A++I P +I++ + + + Sbjct: 631 ND-------------------------------NQALYRDAYDIGPEAIIDTYAEATRHV 659 Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 660 DQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIR 697 >gi|312601196|gb|ADQ90451.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyopneumoniae 168] Length = 720 Score = 308 bits (789), Expect = 3e-81, Method: Composition-based stats. Identities = 169/737 (22%), Positives = 296/737 (40%), Gaps = 99/737 (13%) Query: 246 HEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY 305 + + E ++ + +L L F ++G Y Y Sbjct: 54 FKFFNSFKERIEFLVQNNYYDPKVLGQYSFQELEKLNTKAWSYNHFFSSFMGAFKFYSTY 113 Query: 306 FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 L N + + + F RV + ++A + + F +TPT N+G + Sbjct: 114 GLKSNDNLVY-FEHFPDRVLLNSLFLGKGDFQKAEKILEQIMLGRFQPATPTFLNAGKLN 172 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 + SC+L V D++ I A+ + L+K GG+ + +R GA I ++ GV Sbjct: 173 RGEFVSCYLIRVEDNMESISRAITTSLQLSKRGGGVSVLLSNLREQGAPIKNIENQATGV 232 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D+ NQ G+R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 233 IPVMKILEDSFSYANQLGQRQGAGAVYLNAHHPDILAFLDTKRENADEKIRIKSLSLGII 292 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISA 542 IP++ + N LFS V D+ +Y K F E Y + EIK ISA Sbjct: 293 IPNITFELAKNNEKMALFS---VYDVEKVYQKAFSDISISEKYYQMLANPEIKKTF-ISA 348 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET----- 597 L++ + + FE+G+P+I F+D N H V SNLC+EIT S+ Sbjct: 349 RKLFKIIAELHFESGYPYILFEDIVNK--ENAHPDRVVMSNLCSEITQPSTPSTFLPDLS 406 Query: 598 -------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLGS+N+ + D++++ A+ V+ D++ +K N Sbjct: 407 FKEIGKDICCNLGSLNIDKAMES-GPDFEQMVYYSVLALDVVSRNSDLSVA--PSIQKGN 463 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 + + AIGLG M L I Y S EA++ + ++F A AS +LA++ G +S Sbjct: 464 NLNHAIGLGAMNLHGFLAKNEIFYDSEEALDFTNIFFYTLAFSAFKASEKLAKKYGPFSG 523 Query: 711 FKGSLWDQGVFPIDSIGLLA-----------EVRDELAMNRTSRLPWDELKKRVKTIGMR 759 F+ + + G + + E+ + + ++ W L +++K G+ Sbjct: 524 FEKTKFASGEYFDKYTKVSPNTFLPKTHKIKELFAKYQVEIPTQEDWIHLIEKIKKTGIA 583 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS+ MAIAPT +I+ + + S+ P + ++ V S+ Sbjct: 584 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEIRKEGKLGRIYVPSY-------------- 629 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLD 878 ++ K + A+E+ P+ +I S QK +DQA S+ L++ Sbjct: 630 ----------------KLSPKTYKFYQNGAYELGPIPIINIVSEAQKHVDQAISMTLFMT 673 Query: 879 E-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + + + L+ Y A+ K+ YY+R R Sbjct: 674 DKATTRDLNRAYIYAFKKNCKSIYYVRIR------------------------------- 702 Query: 938 LGIPSSCTSDTECEVCQ 954 + + C+ CQ Sbjct: 703 QDVLEDSENYETCQSCQ 719 >gi|161615702|ref|YP_001589667.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365066|gb|ABX68834.1| hypothetical protein SPAB_03487 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 714 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|282862309|ref|ZP_06271371.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. ACTE] gi|282562648|gb|EFB68188.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. ACTE] Length = 971 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 125/628 (19%), Positives = 230/628 (36%), Gaps = 36/628 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ V D + I +E M+ Sbjct: 127 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 186 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 187 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 245 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E F++ + + R D + + ++ Sbjct: 246 VDHPDIENFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 295 Query: 514 YGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 EF A E+ + R + V ++ A +L+RKM + P I + D N Sbjct: 296 VNDEFMKAVESGGKFGLRARMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWH 355 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626 G ++ SN C+E + CNL S+NL+ + F+ ++ A + Sbjct: 356 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGEGHQSFEAERFAKVVE 411 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + +D I +K ++ R +G+G + L Y S +A Sbjct: 412 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRSLAGAI 471 Query: 687 MEFISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTS 742 ++ + S ELA G Y + + + + A D+L + + Sbjct: 472 TSLMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHSDANATAVRVDDLDSPVWAAA 531 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800 W ++ + G RNS IAPT TI + ++P + + K G Sbjct: 532 TEAWQDVLRLGAKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQ 591 Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855 +VN + L++ E + + + +G++ + + + ++ A I M Sbjct: 592 IVNGTVPQALRRLGYQAEQIEAIVAHIAENGNVIDAPSLKTEHYEVFDCAMGERSISAMG 651 Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + Q WI A S + L E + + ++ +Y +AW MG+K R S Sbjct: 652 HVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 711 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 T K + K T+ + Sbjct: 712 TKKWEEKKDEVTAKTEDTIRAAVEKVVE 739 >gi|227891213|ref|ZP_04009018.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus salivarius ATCC 11741] gi|227867087|gb|EEJ74508.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus salivarius ATCC 11741] Length = 723 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 285/712 (40%), Gaps = 76/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 E L + K + + E I+ + L + LK E Sbjct: 34 EEALEAFLNENVKPNTKQFSSI-KERINYLIQNNYYEEEFISKYSFEFIEKLYDYLKKE- 91 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y +Y L + + + + F RVA EK A+E + L Sbjct: 92 DFHFKTFMAAYKFYAQYALKTDDNAYYL-ENFIDRVATNALYFGDGDEKLALELADELIH 150 Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + + + Sbjct: 151 QRYQPATPSFLNAGRKRRGELVSCFLIQMTDDMNSIGRNINSALQLSRIGGGVGINLSNL 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 RG GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL +K Sbjct: 211 RGAGAPIKGIHGAASGVVPVMKLLEDSFTYSNQLGQRQGAGAVYLNVFHPDIEAFLSAKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD + + V +N LF P V ++ +I E Sbjct: 271 ENADEKIRVKTLSLGLVVPDKYYELVAKNEDMYLFDPWGVERVYHKPFSYVDITKEYDNM 330 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 A+ K + I A L ++ + E+G+P++ D N G + SNLC+E Sbjct: 331 VANPNIPK--KVIKARDLEEQISKLQQESGYPYVINIDTANR--VNPISGKIVMSNLCSE 386 Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I + +E V S NL + N ++ R L V D + Sbjct: 387 ILQVQRASVINNRQEYEVLGTDISCNLGSTNIVNLMASPNFGKSVEVMTRALTFVTDKSD 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + N IGLG MG + L I Y SPEA+E +++ + AS Sbjct: 447 IDVVPSIQHGNRLAHTIGLGAMGLHAYLAKNQIEYGSPEALEFTSVYFMLLNYWTLVASN 506 Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELK 750 ++A+ER + +F+ S + G + + + E+ D + + ++ W LK Sbjct: 507 KIAKERKVTFDNFENSKYADGSYFDTYLNQEFAPKNARVKELFDGIFIP--TKSDWTSLK 564 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809 + V G+ + N +A+AP +I+ I + S+ P + + G +L N Sbjct: 565 EHVMKYGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQERKIGKIYYPAPYLSN- 623 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + + +A++ D +I++ + Q+ +DQ Sbjct: 624 ------------------------------ETLPYYKSAYDTDMRKVIDTYAAAQQHVDQ 653 Query: 870 AQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + L + A G+K+ YY+R+ Sbjct: 654 GMSLTLFMRSTIPAGLYEWKNGRTDKMTTRDLSILRNYAHYKGVKSIYYVRT 705 >gi|297202847|ref|ZP_06920244.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sviceus ATCC 29083] gi|197717331|gb|EDY61365.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sviceus ATCC 29083] Length = 966 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 120/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 126 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 185 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 186 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 244 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E+F++ + + R D + + V ++ Sbjct: 245 VDHPDIEDFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDAFMKAVE 304 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G +F R +V ++ A AL+RKM + P I + D N Sbjct: 305 TGGKF--------GLTSRMTGEVIEEVEAKALFRKMAEAAWACADPGIQYDDTINHWHTC 356 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ N F+ ++ A + Sbjct: 357 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKVVELV 412 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 413 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGSITS 472 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ + S ELA G Y + + + ++ + Sbjct: 473 LMTGTSYRRSAELAAVVGPYDGYARNAQPHLRVMKQHSDENGKAVRVDDLDTPIWAAATE 532 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RNS IAPT TI + ++P + + K G +V Sbjct: 533 AWQDVLRLGEKNGFRNSQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 592 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + +G++ + + + ++ A I M + Sbjct: 593 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKHEHYEVFDCAMGERSISAMGHV 652 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + L E + + ++ +Y +AW MG+K R S Sbjct: 653 RMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 712 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 K + + Sbjct: 713 TKEKEKTEVTEKAEATIRETVEKVIE 738 >gi|261749411|ref|YP_003257096.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497503|gb|ACX83953.1| ribonucleotide-diphosphate reductase subunit alpha [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 571 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 164/632 (25%), Positives = 264/632 (41%), Gaps = 106/632 (16%) Query: 302 YDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL 358 + Y I G + E P + R++ A + + +F+N+L + STP + Sbjct: 24 NELYLTTIKGGYLLDGETPFEAYKRLSENAAKILKKPKI-EKKFFNILWKGWLIPSTPVM 82 Query: 359 FNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N GT SCF V D +Y I+ E A+L+K+ GG D++ +R +G+ I Sbjct: 83 VNLGTEKGLPISCFSGRVGDSMYEIYRKNLEMAILSKHGGGTSYDFSLIRSVGSPIKNGT 142 Query: 419 -GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTH 477 G S G+IPF+K + +A QG R+GAV YL H + EFL +R+ GD R+ H Sbjct: 143 LGTSDGIIPFVKSYDSAIIASKQGSTRRGAVAIYLNIEHQEYPEFLKIREPKGDINRQCH 202 Query: 478 DMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF 537 +++ + + FM++V + Sbjct: 203 NVHQGVILSNSFMEKVLK------------------------------------------ 220 Query: 538 RKISAVALWRKMLTMLFETGHPWITFKDPCNIR---SPQQHVGVVHSSNLCTEITLNSSS 594 + +LW L +TG P++ FKD N + +++ +H SNLC+EI L + Sbjct: 221 KNGKERSLWINTLKERVKTGEPYLFFKDNANRNLPENWKKNGLKIHHSNLCSEIMLPTDE 280 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------INCHTIEKAKK 648 T VC L S+NL + K T+ A+ LD V+ N IE A + Sbjct: 281 SHTLVCCLSSLNLYKYVE------WKDTQTVFYAILFLDAVLQEFINKGKNIKGIEDAVR 334 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 RA+GLG +G+ S L IP+ S ++ + + I + A+ LA+E G Sbjct: 335 FAEKSRALGLGALGWHSYLQSEMIPFISVKSEILTHDIFGKIRSESQKATQYLAKEYGES 394 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G+ G RN MA+AP Sbjct: 395 EWNIGT------------------------------------------GRRNLTLMAMAP 412 Query: 769 TATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 + A + G +SQ ++P N+YV + G N +L L + + + Sbjct: 413 NRSSAKLAGGLSQGVEPLAANIYVDDDAKGMHIRKNPYLEKILIKSGYNLPEVWEQIANE 472 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL-YLDEPSGKKLD 886 GS + + + K + EI+ + LI+ AS RQK+IDQ QS+NL + K ++ Sbjct: 473 KGSCLGLTGLSEKEKNVFLCFKEINQLELIKQASIRQKYIDQGQSINLAFHQNTPAKFIN 532 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 ++ +AW +GLK+ YY RS S E + + Sbjct: 533 KVHLEAWKIGLKSLYYYRSESILRAENTKSRD 564 >gi|186472165|ref|YP_001859507.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phymatum STM815] gi|184194497|gb|ACC72461.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phymatum STM815] Length = 851 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 143/661 (21%), Positives = 251/661 (37%), Gaps = 88/661 (13%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMG--LALKETEKEKRAVEFYNLLSSFHFM 352 L +L ++Y + RVA G LA E + F L + Sbjct: 24 QFSLDVLMEKYAKGDER----TADDVYRRVARGVALAEPEALRPAIEARFVENLQNGALG 79 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 80 AGRIMSAAGAGIQATLINCFVQPVGDSIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNF 139 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + T + G ++ V + + V G R+GA A L+ H D+ EF+D Sbjct: 140 SAIRPRGARVKTTGSSASGPCSYIDVFDASCRTVESAGSRRGAQMAVLDCTHPDLLEFID 199 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM+ V +A W L E + Sbjct: 200 AKHSKG----RWNNFNVSVAVTDEFMQAVENDAMWQLVHRAEPTP----------ALRAA 245 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + + V+ + A ++ +++ ++ P I F N + + V + ++N Sbjct: 246 NDVRQRDDGMWVYSERRAKEIFDRIMRSTYDIAEPGIVFISRMNDDNNLRAVESIRATNP 305 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L CNLG +NL + FD+D LA RT VR LD+V Sbjct: 306 CGEQPLPPY----GCCNLGPLNLTRFVLDPFAQRHGGKPSFDWDALAQRTRTQVRFLDDV 361 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ +E+ + R IG+G G L ++ + Y S E + A + + A Sbjct: 362 LDVTLWPLEQQYDESRAKRRIGVGFTGLGDTLVMMGLRYNSQEGRDFAVRIAKLMRDEAY 421 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA+ L + L + D++K+ ++T Sbjct: 422 RASVELARERGAFP-------------------LFNAKQYLQDGTFASRLPDDVKEAIRT 462 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS----NMSGDFTVVNSFLVNE 809 G+RNS+ ++IAPT T++ S I+P++ Y ++ N S + V Sbjct: 463 HGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRTKVMANGSREQFAVEDHAYRL 522 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 ++ G +G++ +A E+ ++ + Q +ID Sbjct: 523 YRELG--------------GDVGHLP-------DYFVSALEMSARDHLDMMAAVQPYIDT 561 Query: 870 AQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPV 928 + S + + + + +Y AW GLK R S + Sbjct: 562 SISKTVNVPADYPFDAFENLYFDAWKGGLKGLATYRPNETLGAVLSVTPQAAPTADDALA 621 Query: 929 T 929 Sbjct: 622 E 622 >gi|319942969|ref|ZP_08017252.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] gi|319743511|gb|EFV95915.1| ribonucleotide-diphosphate reductase subunit alpha [Lautropia mirabilis ATCC 51599] Length = 829 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 144/670 (21%), Positives = 246/670 (36%), Gaps = 73/670 (10%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356 +L ++Y + E+ F RVA LA E +++ +F L + Sbjct: 23 DVLAEKYLKDGEKTEAEL----FARVARALASVEKPEIRDEWEAKFLGNLHAGAIGAGRI 78 Query: 357 TLFNSGTRHPQLSSCFLTTVPDD--------LYGIFGALQENAMLAKYSGGLGNDWTPVR 408 L +CF+ V D GI+ AL+E A + GG+G D++ +R Sbjct: 79 MSAAGTDIQATLINCFVQPVGDCIQGYDDQGYPGIYEALREAAETMRRGGGVGYDFSRIR 138 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + GT+ + G ++ V + + V G R+GA L H DV +F+ ++ Sbjct: 139 PNGAEVKGTHSIASGPCSYINVFDQSCATVESAGSRRGAQMGVLRIDHPDVLDFITAKRT 198 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 G R ++ N + + D FMK + NA W L G Sbjct: 199 PG----RWNNFNVSVGVTDAFMKALQDNADWELVHRARPGRKVMAAGAY----------- 243 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 V+R++ A LW ++ ++ P I F D + + + ++N C E Sbjct: 244 QRDDGKWVYRRVPARQLWDTIMKSTYDFAEPGILFLDAIGRDNNLNYCETIEATNPCGEQ 303 Query: 589 TLNSSSEETAVCNLGSINLLAHFAN-------NQFDYDKLASTIRTAVRVLDNVIDINCH 641 L C+LG I L N FD+ + VR LDNV+D+ Sbjct: 304 PLPPY----GCCDLGPIILTRFVRNAFGHGGEPTFDFAAFEDVVAIQVRALDNVLDVTFW 359 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 ++K + R IG+G G + L +L + Y E +A E + A ASVEL Sbjct: 360 PLDKQRAEAAAKRRIGVGFTGLGNTLAMLKLRYDRAEGRAMAARIAETMRNAAYRASVEL 419 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+GA+ F + L + + + SRL D++K ++ G+RNS Sbjct: 420 AKEKGAFPQFDADRY------------LGKGSKKGEGSFASRL-PDDIKADIRKYGIRNS 466 Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 + ++IAPT T++ S I+P + Y + D + + ++V + Sbjct: 467 HLLSIAPTGTVSLAFADNASNGIEPPFSWTYTRRKREADGSR-SEYVVED---------H 516 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878 K G + D+L A + + Q ++D + S + + Sbjct: 517 AWRLFKSQGGDV-------DNLPDYFVNALAMTAQEHVAMMEAVQPYVDTSISKTVNVPA 569 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 + + +Y+QAW LK R + A Sbjct: 570 DYPYEDFKDLYQQAWKARLKGLATYRPNPILGAVLEAEPAKKEEKPADKAEAAAQQHEQD 629 Query: 939 GIPSSCTSDT 948 + Sbjct: 630 PMRKVIERRP 639 >gi|269121364|ref|YP_003309541.1| ribonucleoside-diphosphate reductase, subunit alpha [Sebaldella termitidis ATCC 33386] gi|268615242|gb|ACZ09610.1| ribonucleoside-diphosphate reductase, alpha subunit [Sebaldella termitidis ATCC 33386] Length = 696 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 164/692 (23%), Positives = 293/692 (42%), Gaps = 58/692 (8%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI-- 300 + ++ I+ ++ + + + D F + Sbjct: 35 LDYVNKNTVFFYTLKEKIDYLIENDYYIDFYKMYTFEEIQKVFTLVYDKKFRFPSFMSAF 94 Query: 301 -LYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPT 357 Y Y L + +E + R+A+ +++E+ +L + + +TPT Sbjct: 95 KFYQSYALRDDSGEKFLERYED---RIAVISLYLGQGNLTQSLEYAEMLINQEYQPATPT 151 Query: 358 LFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHG 416 NSG + +L SCFL + D+L GI A+ L+ GG+ + + +RG G I G Sbjct: 152 FLNSGKKRSGELVSCFLDEIGDNLNGIGYAVDSAMKLSSIGGGVALNLSKLRGRGESIKG 211 Query: 417 TNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRT 476 G++ GV+P +K+ D NQ G+R GA YL +H D+EEFLD +K D++ R Sbjct: 212 VEGRASGVLPIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDIEEFLDCKKINVDEKVRI 271 Query: 477 HDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKV 536 ++ IPD FM+ ++ + +F V + Y + + E YE D +K Sbjct: 272 KSLSIGVIIPDKFMELAEKDEPYYVFHAHTVFQEYGKYLDDMD-MNEMYEELVDNPNVKK 330 Query: 537 FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN----- 591 +K++A L K+ E+G+P++ FKD N + +G V SNLCTEI Sbjct: 331 -KKLNARHLLVKIAQTQKESGYPYLFFKDNANNEHALKDIGEVKFSNLCTEIMQLSEVSD 389 Query: 592 --SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKK 648 + EE + S NL + + ++ ++TA+ L V D+ + KK Sbjct: 390 IGTYYEEDTIRRGISCNLGSLNIVTVMENKRIKEAVKTAMESLTMVSDLTNIDMVPSIKK 449 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGA 707 +N ++GLG M I Y S EA++ + +++++I S+E+A+ Sbjct: 450 ANEELHSVGLGAMNLHGFFAKNFIMYESREALDFCNVFFMIVNYYSIEKSMEIARDRNKR 509 Query: 708 YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNS 761 + F+ S + +G + + + +V++ ++ ++ W+ LK +V GM ++ Sbjct: 510 FKDFEKSEYAKGTYFDKYTEHEYMPKTEKVKELFDGIHIPTKEDWEILKGQVMKNGMYHA 569 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 MAIAP + + I + S+ P + V+ +L N+ Sbjct: 570 YRMAIAPNQSTSYILSSTASVMPIVDTIEVREYGDSTTFYPMPYLTND------------ 617 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP- 880 + +A+++D LI+ S Q+ +DQ S LY + Sbjct: 618 -------------------NYFFYKSAYDMDQKSLIKLISVIQRHVDQGISTILYTNSSD 658 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + + L Y A MGLK+ YY R+R AT E Sbjct: 659 NTRDLAKYYVYAHKMGLKSLYYTRTRKATIDE 690 >gi|311898754|dbj|BAJ31162.1| putative vitamin B12-dependent ribonucleotide reductase [Kitasatospora setae KM-6054] Length = 964 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 122/603 (20%), Positives = 225/603 (37%), Gaps = 28/603 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFG 385 G + E E + L F ++P FN GT+ Q+S+CF+ V D + I Sbjct: 120 GYFASPDDAEIFEHELTHALLHQVFSFNSPVWFNVGTQQPQQVSACFILAVDDSMDSILD 179 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E M+ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 180 WYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 238 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H DVE F++ + + R D + + V Sbjct: 239 RAAKMVVLDVDHPDVEAFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRV 298 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 ++ G F + +V + A AL+RKM + P I + Sbjct: 299 NDEFMTAVENGGSFGLRARMT--------GEVIETVDAKALFRKMAEAAWACADPGIQYD 350 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 N G +++SN C+E + + CNL S+NL+ ++ FD ++ A Sbjct: 351 SVINHWHTCPESGRINASNPCSEYMH----LDNSSCNLASLNLMKFLRDDDSFDAERFAK 406 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I EK ++ +R +G+G + L Y S +A Sbjct: 407 VVELVITAMDISICFADFPTEKIAETTRAYRQLGIGYANLGALLMATGHAYDSAGGRALA 466 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 ++ A S ELA G Y + + A V + + Sbjct: 467 GAITSLMTGTAYRRSAELAAVVGPYDGYARNAAPHQRVMRQHADASAAVAPLDDLDAPVW 526 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 + W ++ + G RN+ +APT TI + + ++P + + K G Sbjct: 527 AVANDTWADVVRLGARNGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 586 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + LK+ DE + + + G++ + + ++ A I Sbjct: 587 SMQIVNGTVPRALKRLGYQDEQVEAVVAHIAEHGNVIDAPGLKSAHYEVFDCAMGERSIS 646 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q WI A S + + + + ++++ IY +AW +G+K R Sbjct: 647 PMGHVRMMAAIQPWISGAISKTVNMPEDATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQ 706 Query: 912 EKS 914 S Sbjct: 707 PLS 709 >gi|241206479|ref|YP_002977575.1| ribonucleotide-diphosphate reductase subunit alpha [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860369|gb|ACS58036.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 716 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 185/713 (25%), Positives = 298/713 (41%), Gaps = 76/713 (10%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R L+K R + + T L + E + +L + +F Sbjct: 32 GRIQLDKDRMAAKQYFLQHVNQNTVF-FHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDL 90 Query: 281 LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEK 337 Y + F F +LG Y Y L +G R E + VA+ LA + E Sbjct: 91 FDQA--YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRICMVALALARGD---ES 145 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKY 396 A + + + S F +TPT N+G + +L SCFL V D++ I ++ L+K Sbjct: 146 LARDMVDEIISGRFQPATPTFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKR 205 Query: 397 SGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWH 456 GG+ T +R GA I +S G+IP +K+ D+ NQ G R+GA YL H Sbjct: 206 GGGVALSLTNIREAGAPIKHIENQSSGIIPVMKLLEDSFSYANQLGARQGAGAVYLNAHH 265 Query: 457 IDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGK 516 D+ FLD ++ D++ R ++ +PD+ + N LFSP D+ +YG Sbjct: 266 PDIMRFLDTKRENADEKIRIKTLSLGVVVPDITFELARNNEDMYLFSP---YDVERVYGV 322 Query: 517 EFEIAYENYERQADRGEIKV-FRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 F + + + ++ +KI A ++ + + FE+G+P+I F+D N +P Sbjct: 323 PFTEISVTEKYREMADDARISKKKIKAREFFQVLAEIQFESGYPYIMFEDTVNRANPI-- 380 Query: 576 VGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLAS 623 G V SNLC+EI S + E CNLGS+N+ A D Sbjct: 381 AGRVSMSNLCSEILQVSEASEYNDDLSYKHLGKDISCNLGSLNIAAA-----MDSVDFGK 435 Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 TI T++R L V D+ + ++ +K N AIGLG M L I Y S E V+ Sbjct: 436 TIETSIRALSAVSDMSHISSVPSIEKGNDESHAIGLGQMNLHGYLARERIFYGSEEGVDF 495 Query: 683 ADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEV--------R 733 + ++++AI AS LA ERGA + F+ S + G + L E Sbjct: 496 TNIYFYTVTYYAIRASNLLAVERGASFKGFENSKYASGDYFDKYTDRLWEPATERVKALF 555 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + ++ ++ W LKK V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 556 ETSGIHIPTQEDWVALKKAVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRK 615 Query: 794 NMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 G F+ N+ + A+EI Sbjct: 616 EGKIGRVYYPAPFMTND-------------------------------NLDYYQDAYEIG 644 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 645 PEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIHAWKKGIKTIYYIR 697 >gi|238896130|ref|YP_002920866.1| ribonucleotide-diphosphate reductase subunit alpha [Klebsiella pneumoniae NTUH-K2044] gi|238548448|dbj|BAH64799.1| ribonucleotide-diphosphate reductase alpha subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 713 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 165/637 (25%), Positives = 272/637 (42%), Gaps = 68/637 (10%) Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L +E + VA+ LA E++A + + S F Sbjct: 100 TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLA---RGDEQQARQLTEEILSGRF 156 Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N+G + +L SCFL + D++ I A+ L+K GG+ + +R Sbjct: 157 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 216 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GV+P +K+ D NQ G R+GA +L H D+ FLD R+ Sbjct: 217 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 276 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529 D++ R ++ IPD+ + ++A LFSP D+ LYGK F A + Q Sbjct: 277 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 333 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579 E R I A L++++ + FE+G+P+I F+D N SP + V Sbjct: 334 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 393 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 + + E + E CNLGS+N+ D TI TAVR L V D+ Sbjct: 394 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 448 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ N AIGLG M L I Y SPE ++ + +++HA+ S Sbjct: 449 HIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 508 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749 ++LA+ER ++ F+ S + G + + + + E ++ R W +L Sbjct: 509 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQL 568 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 + V G+ N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 569 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 628 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ A+EI P +I++ + + +D Sbjct: 629 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 657 Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 Q SL L+ + + + ++ AW G+KT YY+R Sbjct: 658 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 694 >gi|194451930|ref|YP_002046770.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205359377|ref|ZP_02669536.2| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194410234|gb|ACF70453.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336552|gb|EDZ23316.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 714 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGETFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|198245896|ref|YP_002216783.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940412|gb|ACH77745.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624541|gb|EGE30886.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 714 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + EG Sbjct: 15 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 74 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + ++ L +LG Y Y L +G R E + VA Sbjct: 75 AVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 +V YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 312 YDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDD 541 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 542 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690 Query: 900 TYYLR 904 YY+R Sbjct: 691 LYYIR 695 >gi|172041161|ref|YP_001800875.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium urealyticum DSM 7109] gi|171852465|emb|CAQ05441.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium urealyticum DSM 7109] Length = 719 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 167/700 (23%), Positives = 283/700 (40%), Gaps = 66/700 (9%) Query: 229 RREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYE 288 + + + T E +E + + + + L + Sbjct: 43 HKAANQFFLQHVNQNTVFFHNL--AEKLEYLVENKYYDKEILDKYDFPFIKALFKQAYAK 100 Query: 289 RDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + +LG Y Y L +G R E + RV M E+ A + + Sbjct: 101 KFRFQSFLGAYKYYTSYTLKTFDGKRYLERFED---RVCMVALGLADGDEEMAKSLVDEI 157 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 F +TPT N G + SCFL + D++ I ++ L+K GG+ + Sbjct: 158 LDGRFQPATPTFLNIGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLS 217 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I +S G+IP +K+ D NQ G R+GA YL H D+ FLD Sbjct: 218 NIREAGAPIKHIENQSSGIIPVMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDT 277 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA--YE 523 ++ D++ R ++ IPD+ + +NA LFSP +V +YGK F E Sbjct: 278 KRENADEKIRIKTLSLGVVIPDVTFELARKNADMYLFSPYDV---ERVYGKPFADISVTE 334 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +Y+ + I+ +KI+A ++ + + FE+G+P+I ++D N +P G + SN Sbjct: 335 HYDEMVEDPRIRK-KKINARDFFQTLAEIQFESGYPYIMYEDTVNRANPI--AGRITHSN 391 Query: 584 LCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 LC+EI N + + S NL + D + TI A+R L V Sbjct: 392 LCSEILQVSTPSAFNEDLTYETIGDDISCNLGSMNIAMAMDSADFSKTIEIAIRALTAVS 451 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D + ++ ++ N AIGLG M L HI Y S EA++ + + + + Sbjct: 452 DQTDIDSVPSIRQGNDHSHAIGLGQMNLHGYLGREHIHYGSEEALDFTNAYFAAVMYECL 511 Query: 696 SASVELAQERGA-YSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPW 746 AS ++A ERG + F+ S + G F P + +V++ A + + W Sbjct: 512 KASNKIAIERGTAFHDFENSEYASGAFFDRYDPAEFAPKTEKVKEIFAASSIEVPTTEDW 571 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSF 805 ELK V G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 572 AELKASVAKHGIYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYAAPH 631 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + N + + A+E+ +I++ + K Sbjct: 632 MNN-------------------------------ENLEYFEDAYEVGFEKIIDTYAVATK 660 Query: 866 WIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 661 YVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYVR 700 >gi|197249723|ref|YP_002147707.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213426|gb|ACH50823.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 714 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 173/680 (25%), Positives = 284/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAKMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y S EA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSSEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|332292140|ref|YP_004430749.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter diaphorus 4H-3-7-5] gi|332170226|gb|AEE19481.1| ribonucleoside-diphosphate reductase, alpha chain [Krokinobacter diaphorus 4H-3-7-5] Length = 596 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 155/625 (24%), Positives = 250/625 (40%), Gaps = 119/625 (19%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 P+ VA + +FY +S F ++P N G SCF + Sbjct: 62 SPEERIREVADRAEQILGIP-GFSDKFYGYMSEGFFSLASPVWSNFGKERGLPISCFGSH 120 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + DD+ I E M++K GG + +R GA + NG++ G + +++ Sbjct: 121 ISDDMGNILYTQSEVGMMSKLGGGTSGYFGKIRPRGADVKN-NGQASGSVHIMQLFESMV 179 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QG R+G YL H D+EEFL + + ++ + + +M+ + Sbjct: 180 DVVSQGSVRRGRFSPYLPIEHADIEEFLKIGT----EGNSIQELTHGVTVTNEWMEEMIA 235 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LW K+L E Sbjct: 236 GDSAK------------------------------------------RSLWAKVLQSRGE 253 Query: 556 TGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 G+P+I F D N + + +++SNLCTEI L S+ + + VC L S+N+L Sbjct: 254 MGYPYIFFTDNANNGAADVYKDNDHKIYASNLCTEIMLPSNDDWSFVCVLSSVNVL---- 309 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS------------------NHTHR 654 +D K + T V LD VI +E+ + S +R Sbjct: 310 --HYDKWKNTDAVETMVYFLDAVITEFLEKLERYRDSDSREDRQTFLFMERAYNFAKANR 367 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 ++GLG++G+ S L +P+ S EA + E + I + AS ELA+ G KG Sbjct: 368 SLGLGVLGWHSLLQSRMLPFNSQEAYNLNSEIFKAIKDKSYEASEELAKTFGEPEVLKG- 426 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 G RN+ A+APT + A Sbjct: 427 -----------------------------------------YGRRNATLNAVAPTTSSAF 445 Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G VSQ I+P + N+YVK T+ N FL L+++ + + ++ DGS+ + Sbjct: 446 ILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLEELLEEKGMNTTEVWRSIRDMDGSVQH 505 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 +E + ++ K T EID M +I A+ RQ IDQ QS+N+ + E K+++ I+ A Sbjct: 506 LEFLSENEKDTFKTYSEIDQMDIIYQAANRQNHIDQGQSVNIIVHPEMPVKEINKIHVTA 565 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLK 917 W +GLK+ YY S +A K Sbjct: 566 WKLGLKSLYYQHSMNAAQKFKQKKD 590 >gi|311993500|ref|YP_004010365.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9] gi|295917457|gb|ADG60128.1| NrdA aerobic NDP reductase large subunit [Acinetobacter phage Acj9] Length = 803 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 176/879 (20%), Positives = 300/879 (34%), Gaps = 148/879 (16%) Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIF 204 +K++ G F ++ ++E +C ++ + D ++ ++++ A++ Sbjct: 1 MKVIKSSGIAQDFIPAKIIQVLEWSCEK-TTINPYELFELCQPFFKDEMTTTEIQRAIVK 59 Query: 205 SSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 S I+ + +Y V + LR+EV LY + + G Sbjct: 60 VSADSIQIDQTDYQYVASNLAQFGLRKEVYGQFDPPH----------LYDHVVAK-TDVG 108 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFF 321 + + E + L + ++RDF F Y G + D+Y + G E PQ + Sbjct: 109 IYDPEIIERYTREEFDALNAMIDHDRDFNFTYAGTMQMKDKYLVKDRSSGEIFETPQFLY 168 Query: 322 MRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 M + M L E + + +FY+ S F TP L T Q SSC L DD Sbjct: 169 MLIGMCLHQNENPAKRLQYIKDFYDAASQFKISLPTPILAGVRTPTRQFSSCVLIETGDD 228 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 L I G+G +R G+ I K GV PF K+ N + + Sbjct: 229 LESITETTSAIVKYVSKRAGIGISGGAIRAEGSKIGPGEVKHTGVTPFWKLKNAAVHSCS 288 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 QGG RKG+ Y WH++ E + L+ N G + R M+ + +L ++R N Sbjct: 289 QGGIRKGSATCYWPIWHLECENLMVLKNNKGIEENRIRHMDYGIQLNNLMIERYLTNDYV 348 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR-KMLTMLFETGH 558 TLFS + E + + +R ++I A L++ +T T Sbjct: 349 TLFSTEINGGKLLESYYADEELFRTMYEELERNPAIRKKRIKATELFQGLFMTERANTAR 408 Query: 559 PWITFKDPCNIR-SPQQHVGVVHSSNLCTEITLNS---------------SSEETAVCNL 602 + D N + + V SNLC EI L++ + + Sbjct: 409 LYPQHVDNTNNFGPWIRSIAPVKMSNLCAEIALHTVALGTYQTQRLTVASGDIVSFIEKY 468 Query: 603 GS------------------------------------INLLAHFAN--NQFDY---DKL 621 GS I L A + FD+ +++ Sbjct: 469 GSKRVVLPSVEDGFTRVKKGYRAKEGEIAFNVQEDLGEIALCTLSAWVLDNFDWRDQEEV 528 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 VR LDN++D + + A K +R++G+G+ + + L Y E Sbjct: 529 NRIGMVMVRALDNLLDYQDYPHQNALK-AKEYRSLGIGVTNYAAWLASNASSYEDD--HE 585 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 E E + + I+AS++LA+E+G + + +G PID + Sbjct: 586 TTHELFERLQYALINASIDLAEEKGPSPQLHKTKYGRGELPIDWYCKNVDE----LAPPV 641 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 L W+ + R+K IGMRN A P + + + + I+ + + K + G F Sbjct: 642 YVLDWEATRTRLKIIGMRNVTLSAQMPCESSSQVSNSTNGIERPLKPVSYKQSKDGSFNQ 701 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 V + ++ E + + Sbjct: 702 VVPNY----EVNQMFYEFAWESAAKFG------------------------NKGYLAKMA 733 Query: 862 RRQKWIDQAQSLNLYLDEPSGKK-------LDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 QKW DQA SLN Y S + + + G K YY + Sbjct: 734 VIQKWTDQAISLNTYYVPASYENGKVPMSAMMDDMLYCFYYGNKNMYYHNT--------- 784 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 G S ++D +CE C Sbjct: 785 ----------------------DDGSGSDDSNDADCESC 801 >gi|200387421|ref|ZP_03214033.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604519|gb|EDZ03064.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 714 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRALFARSGIMLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|55978392|ref|YP_145448.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus thermophilus HB8] gi|55773565|dbj|BAD72005.1| ribonucleoside-diphosphate reductase, alpha subunit [Thermus thermophilus HB8] Length = 559 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 164/587 (27%), Positives = 245/587 (41%), Gaps = 103/587 (17%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E +F ++ + +TP N G R SC+ T V DD I A+ E M++K Sbjct: 51 EGFGRKFLEYMARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGMMSK 110 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG +R GA I NG+S G F + + NQG R+G AYL+ Sbjct: 111 QGGGTSLYLGRLRPRGAPIRD-NGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYLDVE 169 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+L +++ + + + D +++ + Sbjct: 170 HPDLEEWLSIQR----EHSPVQSLFWGVSVGDRWLEEMIAG------------------- 206 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 GE + W K+L E G P++ F+D N ++P+ Sbjct: 207 ---------------DGEKRAR--------WAKILKSRAEVGIPYLFFRDNANQKAPEVF 243 Query: 576 ---VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +SNLCTEI L SS EE+ VC L S+NLL ++ K + T V L Sbjct: 244 RALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLVIFL 297 Query: 633 DNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D+V+D +E+A + +RAIGLG++G+ S L IP SPEA E Sbjct: 298 DSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRNAEI 357 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + I A AS L + R P Sbjct: 358 FKTIRERAEEASRWLRK---------------------------------------RHPE 378 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 DEL + RN+ +AIAPT + A I G VS SI+P N Y+K N F Sbjct: 379 DELAGVGELKERRNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFKNPF 438 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L L+++ +E + + H+GS+ +++ + D+ K + T EI M L+ A+ RQK Sbjct: 439 LEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAASRQK 498 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 IDQ QSLNL + E + ++ + AW GLK YY S+S Sbjct: 499 HIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQSVAQA 545 >gi|295699386|ref|YP_003607279.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1002] gi|295438599|gb|ADG17768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. CCGE1002] Length = 861 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 146/659 (22%), Positives = 256/659 (38%), Gaps = 80/659 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352 L +L ++Y + + RVA G+A E + +F + + Sbjct: 32 QFSLDVLLEKYAKGDE----QSADDVYRRVARGVAEAEPPELRASVEEQFVDNMRHGALG 87 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 88 AGRIMSAAGSGIAATLINCFVQPVGDSIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNF 147 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA +H T+ + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 148 SAIRPKGARVHTTSSAASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 207 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM+ V W L E S G Sbjct: 208 AKHSKG----RWNNFNVSVGVTDEFMRAVENEEPWQLVHRAEPSPALRAAGDV------- 256 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W +++ ++ P I F N + + V + ++N Sbjct: 257 ---RQREDGLWVYSEHPARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 313 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL FD+D LA RT VR LD+V Sbjct: 314 CGEQPLPAY----GCCNLGPLNLTRFVVDPFAQLQGRQPSFDWDGLARRTRTQVRFLDDV 369 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L ++ + Y S E + A + A Sbjct: 370 LDVTLWPLPEQYAESRAKRRIGVGFTGLGDTLVMMGLRYNSQEGRDFAVRIARLMRDEAY 429 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA+ F + + L + D+LK+ ++ Sbjct: 430 RASVELAKERGAFELFDAARY-------------------LEAGTFASRLPDDLKQAIRR 470 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y + ++ + + Sbjct: 471 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGGRE 519 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 E L G G++ R+PD +A ++ ++ + Q ++D + S Sbjct: 520 SFDVEDYAYRLYRELG--GDVTRLPD----YFVSALQMSARDHLDMMAAVQPYVDTSISK 573 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 + + + + +Y AW GLK R S A DP Sbjct: 574 TVNVPADYPFDAFESLYFDAWKSGLKGLATYRPNDTLGAVLSVSSAQSDDTLAEMDQDP 632 >gi|94311068|ref|YP_584278.1| ribonucleotide reductase large subunit [Cupriavidus metallidurans CH34] gi|93354920|gb|ABF09009.1| ribonucleotide reductase, coenzyme B12-dependent [Cupriavidus metallidurans CH34] Length = 832 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 154/663 (23%), Positives = 258/663 (38%), Gaps = 80/663 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFM 352 + +++L ++Y + RVA LA E ++E A F F+ Sbjct: 16 DISIEVLQEKYAKGEE----QTIDDVRRRVARALAEVEPADKREAWASRFL-WALEGGFV 70 Query: 353 CSTPTLFNSGTRHP-QLSSCFLTTVPDD-------LYGIFGALQENAMLAKYSGGLGNDW 404 + +GT L +CF+ V D I+ A+ + A + GG+G D+ Sbjct: 71 PAGRINSAAGTGIQATLINCFVQPVGDSVSQVRGGKPSIYTAVAQAAETMRRGGGVGYDF 130 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + T+ ++ G + F+KV + + V G R+GA L H D+E F+ Sbjct: 131 SSIRPGGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIH 190 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + DR + N + + D FM+ V + L E G AY Sbjct: 191 AK-----DRGDLTNFNISIGVTDEFMQAVAADGEIELIHEAEPGADGIAAG-----AYRR 240 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + Q V+R++ A LW +++ ++ P I F N + + + ++N Sbjct: 241 DDGQ------WVYRRVPARRLWDQVMQATYDHAEPGILFLSRINADNNLYYCETIEATNP 294 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDIN 639 C E L S C LGSINL FD++ A +R + R+LDNV+DI Sbjct: 295 CAEQPLPSY----GCCCLGSINLTRFVRRPFTDQASFDFEAFAEVVRVSTRMLDNVLDIT 350 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + R IGLG +G SAL +L Y + A +A E + HA ASV Sbjct: 351 YWPLPEQQAEAQAKRRIGLGFLGLGSALVMLGHRYDTDAARALAGRISETMRDHAYLASV 410 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 ELA+E+G + F + G F + ++ ++ G+R Sbjct: 411 ELAEEKGRFPLFDADAYLSGGFV--------------------SRLPEPIRDAIREHGLR 450 Query: 760 NSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWD 817 NS+ ++IAPT TI A S I+P++ Y + + + R Sbjct: 451 NSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRRKR-----------MPDDSYRTFEV 499 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 L H G G++E++P+ TA ++ + + Q +ID + S + + Sbjct: 500 ADHAWRLYRHMG--GDVEQLPES----FVTALQMSAIDHMRMLEAVQPYIDTSISKTVNV 553 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 + + +Y +AW GLK R S P T Sbjct: 554 PEDYPYEAFRNLYLEAWKAGLKGLATYRPNQVLGAVLSVTPAATATTAPAPATPSEDDPL 613 Query: 937 SLG 939 + Sbjct: 614 TRP 616 >gi|294338964|emb|CAZ87308.1| Putative Ribonucleoside-diphosphate reductase large chain [Thiomonas sp. 3As] Length = 811 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 144/633 (22%), Positives = 251/633 (39%), Gaps = 78/633 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 + L +L ++Y + RVA LA+ E R+ + + F+ + Sbjct: 5 DISLDVLAEKYAKGDEHTIA----DIHARVARALAV-EEADPARSEALFRQALADGFVPA 59 Query: 355 TPTLFNSGTRHP-QLSSCFLTTVPDD-------LYGIFGALQENAMLAKYSGGLGNDWTP 406 + +GT L +CF+ V D I+ AL + A + GG+G D++ Sbjct: 60 GRIMSAAGTDIQATLINCFVQPVGDSVSDDKEGKPSIYKALAQAAETMRRGGGVGYDFSR 119 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GAH+ GT+ ++ G + F++V + + V G R+GA L H D+E F+ + Sbjct: 120 IRPVGAHVGGTHSRASGPLSFMRVFDASCETVESAGSRRGAQMGVLRIDHPDIEAFIHAK 179 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 D+ + N + + FM+ + +A L D G E Sbjct: 180 -----DQGAFKNFNLSVGVSAAFMQAIENDAQIDLVHKARPGDDQLAEGAHQRADGEW-- 232 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 V+R + A ALW +++ ++ P I F D N + + ++N C Sbjct: 233 ---------VYRSVRARALWDQIMQSTYDHAEPGILFLDTANADNNLYYCETFEATNPCA 283 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCH 641 E L + C LGSINL + FD + + R AVR+LDNV+D+ Sbjct: 284 EEFLP----DYGCCCLGSINLTRFVRDPFTPKARFDAEGFQAVTRVAVRMLDNVLDVTYW 339 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + + R IGLG +G A +L + Y S +A A + + A +ASV+L Sbjct: 340 PLVEQHNEAQNKRRIGLGFLGLGDACVMLGLRYDSDDARRFAADLARTLRDAAYAASVDL 399 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+GA+ F + + F ++ + L+ + G+RNS Sbjct: 400 AKEKGAFPLFDATKYLDSGF--------------------AKRLPEALRADIAAHGIRNS 439 Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 + +A+APT TI+ S I+P++ +Y + + + R+ Sbjct: 440 HLLAVAPTGTISLAFADNASNGIEPAFSWVYTRKKR-----------MADNTTREYEVAD 488 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878 L G ++ +P TA E+ ++ Q +ID + S + + Sbjct: 489 HAWRLYRSMG--RDMSALPPA----FVTALEMSATDHMKMLQVVQPFIDTSISKTVNVPA 542 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 + +Y QAW GLK R + Sbjct: 543 DYPYDDFKDLYLQAWKAGLKGLATYRPNAVLGA 575 >gi|330908706|gb|EGH37220.1| ribonucleotide reductase of class 1b (aerobic), alpha subunit [Escherichia coli AA86] Length = 714 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 289/707 (40%), Gaps = 62/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMTTHVRPNSVAFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHASGFRFKTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 204 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 205 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 264 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 265 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 321 Query: 518 F-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F +IA + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 322 FADIAISEHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--A 379 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 380 ERINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 439 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 440 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 499 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + EL Sbjct: 500 TITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGIT 559 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 560 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 619 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 620 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 648 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 695 >gi|221632943|ref|YP_002522166.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermomicrobium roseum DSM 5159] gi|221155926|gb|ACM05053.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermomicrobium roseum DSM 5159] Length = 589 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 158/609 (25%), Positives = 260/609 (42%), Gaps = 81/609 (13%) Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEK------RAVEFYNLLSSFHFMCSTPTLFNSGT 363 G IE + F RVA +A E + A +FY L+++ F+ +TP L N+GT Sbjct: 23 EGRIIETEEELFWRVARAVAAAEDAFPRGPRSAEIAEKFYELMTTLRFLPNTPALINAGT 82 Query: 364 RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQG 423 + QL +CF+ VPD L GIFGA+++ A + + GG G ++ +R G + T S G Sbjct: 83 QLGQLFACFVIPVPDSLDGIFGAVRDAAKIQQTGGGTGFSFSHLRPRGDLVRSTRRPSSG 142 Query: 424 VIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTAN 483 + F+++ + + + R GA A L H DV EF+D ++N R N + Sbjct: 143 AVSFIRIFDVASDVIATESVRGGANMAVLRCDHPDVREFIDAKRNPALFSR----FNFSV 198 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 + D F++ + L +P G F A +A Sbjct: 199 LVTDDFLRAAIERREIALINPRT--------GLPFAQA-------------------NAG 231 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 L+ M+ +E G P + F D + +G + ++N C E+ L+ C LG Sbjct: 232 ELFDAMVDAAWEVGDPGLLFYDRIQRDNAVPALGPLEATNPCGEVPLHP----WEACVLG 287 Query: 604 SINLLAHF----ANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 S+NL A D L + R A+R LDN+++++ + + + +R +GLG Sbjct: 288 SLNLRAFIVERGDRAFLDEAGLQESARLALRFLDNMVEVSRYPKVEIETICRANRKVGLG 347 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +MGF L L IPY S E+V +AD M + A+ AS LA+ERG + +F S + Sbjct: 348 IMGFADLLLALRIPYGSDESVAVADRVMGLVQAAAVEASRRLAEERGPFPNFPISRYAAR 407 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 P RN+ +APT +I+ I G S Sbjct: 408 GEPP----------------------------------RRNATVTTVAPTGSISIIAGCS 433 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 I+P Y Y + L+ EL + +D A++ ++ G IG+ +P+ Sbjct: 434 SGIEPLYALAYRHVGEFVGIVEPHPLLLRELSRIGKYDPALLHEI-EVTGRIGHRTDLPE 492 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898 +L+++ A EI P I + Q+ ++ A S + L E + + + A +G K Sbjct: 493 ELRRLFRVATEISPEEHIRVQAAVQRHVENAVSKTINLPYEATRDDVRRAFLLAHELGCK 552 Query: 899 TTYYLRSRS 907 R + Sbjct: 553 GVTVYREGA 561 >gi|195977667|ref|YP_002122911.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974372|gb|ACG61898.1| ribonucleotide reductase of class Ib (aerobic) alpha subunit NrdE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 724 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 165/748 (22%), Positives = 306/748 (40%), Gaps = 78/748 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L ++ + + + ++ + ++ Sbjct: 29 KEAVQRYLEEHVYPQSLSFDSLEEKW-RYLVAHDYYDQEILKAYSAECITEAFTYAYQQK 87 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 +G Y Y L + + F R M + + + S Sbjct: 88 FSFLSLMGAMKFYQSYALKTLDGSQYL-EHFEDRAVMNALFLANGDPDLVRDLIDQILSR 146 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F +TPT N+G + + SC+L + D++ I A+ + L+K GG+ T +R Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLR 206 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 +G+ I G ++ G++P +K+ D+ NQ G+R+GA YL H ++ FLD ++ Sbjct: 207 EVGSPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLNVHHPEILTFLDTKRE 266 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R + IPD+ + +N LFSP D+ +YGK+ E Sbjct: 267 NADEKIRIKSLALGVVIPDITFQLARENKDMALFSP---YDIKRVYGKDMSDIAITEEYD 323 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + + ISA L++ + + FE+G+P++ F D N R+P G + SNLC+E Sbjct: 324 RLVANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHPQKGRIVMSNLCSE 383 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I S++ E CNLGSIN+ + +++L +T A+ + Sbjct: 384 IAQVSTASTFEEDLTFKQIGEDICCNLGSINIAEAMKHAAG-FEQLIATSIRALDHVSRA 442 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D++C +K N + A+GLG M L HI Y S EAV+ D ++++A Sbjct: 443 SDVSCA--PSVEKGNAANHAVGLGAMNLHGFLATNHIFYDSAEAVDFTDLFFHTMAYYAF 500 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWD 747 AS +LA+E+GA++ F+ S + G + + A+ + R W Sbjct: 501 KASSQLAKEKGAFAGFEQSTYADGSYFARYLTKEAKPKTAKVAALLERYGFRVPSVADWQ 560 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 EL ++ G+ N++ MA+APT +I+ + + S+ P + V+ V ++ Sbjct: 561 ELVATIQETGLANAHLMAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGHLGRIYVPAY-- 618 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866 +I DD + A+E+ P +I + QK Sbjct: 619 ----------------------------QISDDNYAYYERGAYEVGPEPIINIVAAAQKH 650 Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 +DQA SL L++ + + + L+ Y A+ + + YY+R R + Sbjct: 651 VDQAISLTLFMTDQATTRDLNRAYIHAFKLKCASIYYVRVR----------------QDI 694 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + ++ + + + S C+ C Sbjct: 695 LEGSEQYEEDTIVALTDTNASGEACQSC 722 >gi|29829003|ref|NP_823637.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces avermitilis MA-4680] gi|81720079|sp|Q82KE2|NRDJ_STRAW RecName: Full=Vitamin B12-dependent ribonucleotide reductase; AltName: Full=Ribonucleoside-diphosphate reductase nrdJ gi|29606109|dbj|BAC70172.1| putative vitamin B12-dependent ribonucleotide reductase [Streptomyces avermitilis MA-4680] Length = 964 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 122/626 (19%), Positives = 228/626 (36%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ V D + I +E M+ Sbjct: 123 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 182 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 183 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 241 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E+F++ + + R D + + V ++ Sbjct: 242 VDHPDIEDFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVE 301 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G +F R +V ++ A +L+RKM + P I + D N Sbjct: 302 EGGKF--------GLTSRMTGEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTC 353 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ F+ ++ A + Sbjct: 354 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGRQSFEVERFAKVVELV 409 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 410 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 469 Query: 689 FISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744 ++ + S ELA G Y + + + + +A D+L + + Sbjct: 470 LMTGTSYKRSAELAAVVGPYDGYARNAQPHQRVMKQHSDANGVAVRVDDLDTPIWAAATE 529 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + G RN+ IAPT TI + ++P + + K G +V Sbjct: 530 AWQDVLHLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 589 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + +G++ + + + ++ A I M + Sbjct: 590 NGTVPQALRRLGYQEEQIEAIVAHIAENGNVIDAPGLKHEHYEVFDCAMGERSISAMGHV 649 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + L E + + ++ +Y +AW MG+K R S Sbjct: 650 RMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAK 709 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 K K T+ + Sbjct: 710 KKETEKAEVTAKTEATIREAVEKVVE 735 >gi|253990648|ref|YP_003042004.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782098|emb|CAQ85262.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotid reductase r1 subunit) [Photorhabdus asymbiotica] Length = 709 Score = 308 bits (788), Expect = 4e-81, Method: Composition-based stats. Identities = 172/728 (23%), Positives = 294/728 (40%), Gaps = 71/728 (9%) Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE----G 263 + I K+ +Y + A L + K H+ +F E+ Sbjct: 3 SKINKQRDYHALNAMLNLYDSEGNIQFDKDKLAIYHYFHQHVNQNTIFFHDLKEKLDFLQ 62 Query: 264 VKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH--INGSRIEMPQ 318 + + + +D ++ + Y + F F +LG Y Y L N +E + Sbjct: 63 QEGYYETKVLEQYDFAFIKKLFQQAYSKKFRFQTFLGAFKYYTSYSLKTFDNKRYLERYE 122 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTL-FNSGTRHPQLSSCFLTTVP 377 VA+ LA + A + + S F +TPT + +L SCFL + Sbjct: 123 DRVCMVALTLAQG---NQTLACRLVDEIISGRFQPATPTFLNCGRKQRGELVSCFLLRIE 179 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ I ++ L+K GG+ + +R GA I +S GV+P +K+ D Sbjct: 180 DNMESIGRSINSALQLSKRGGGVACLLSNLREAGAPIKMIENQSSGVVPVMKMLEDAFSY 239 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N Sbjct: 240 ANQLGARQGAGAVYLNAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNE 299 Query: 498 GWTLFSPDEVSDLHDLYGKEFE--IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LFSP ++ ++ + E Y + K I+A + + + FE Sbjct: 300 DMYLFSPYDIQRVYGVPMSEISITEKYAEMVNNQHIRKSK----INAREFFLTLAEIQFE 355 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608 +G+P+I ++D N G ++ SNLC+EI +S+ E A S NL Sbjct: 356 SGYPYIMYEDTVNR--VNPIKGRINMSNLCSEILQVNSASEYADDLSYRYIGKDISCNLG 413 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + + D A +I TA+R L V D+ + ++ +K N AIGLG M L Sbjct: 414 SMNIAHTMDSPNFALSIETAIRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYL 473 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSI 726 I Y S E ++ + +++HA+ S ++A ER Y FK S + G F Sbjct: 474 ARERIYYGSEEGIDFTNIYFYIVAYHALRTSNQIAIERNCYFKGFKDSRYASGEFFNKYT 533 Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + ++ + ++ W ELK V T G+ N N A+ PT +I+ I Sbjct: 534 ERSWQPQTQKVCQLFEQAGIVIPNQQDWLELKASVITHGIYNQNLQAVPPTGSISYINNS 593 Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ + G F+ N+ Sbjct: 594 TSSIHPIVSRIEIRKDGKLGRVYYPAPFMTND---------------------------- 625 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 + + A+EI P +I++ + + +DQ SL L+ D+ + + ++ AW G Sbjct: 626 ---NLEYYKDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKG 682 Query: 897 LKTTYYLR 904 +KT YY+R Sbjct: 683 IKTLYYIR 690 >gi|238755710|ref|ZP_04617044.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] gi|238706077|gb|EEP98460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia ruckeri ATCC 29473] Length = 705 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 174/740 (23%), Positives = 300/740 (40%), Gaps = 85/740 (11%) Query: 195 ESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQC 250 S+L+ + + L + + + ++ AR + + + +K + + Sbjct: 2 TSELDYHSLNAMLNLYDADGQIQFDKDRLAARQYFLQHVNQNTVFFHSLQEKIDYLTEEG 61 Query: 251 LYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFL 307 Y E + +D ++ + + Y + F F +LG Y Y L Sbjct: 62 YYE----------------TEVLAQYDFSFIKSLFQQAYAKKFRFPTFLGAFKYYTSYTL 105 Query: 308 H-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRH 365 +G R E + VA+ LA + VE + S F +TPT N G + Sbjct: 106 KTFDGQRYLERYEDRICMVALTLAAGDQTLAHHLVE---EMISGRFQPATPTFLNCGKKQ 162 Query: 366 P-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGV 424 +L SCFL + D++ I A+ L+K GG+ + +R +GA I +S GV Sbjct: 163 RGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGV 222 Query: 425 IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANW 484 IP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ Sbjct: 223 IPIMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVV 282 Query: 485 IPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAV 543 IPD+ + N LFSP D+ +YG + + + G ++ + KI A Sbjct: 283 IPDITFELAKNNEEMYLFSP---YDIELVYGVPMSEISVSEKYREMVGNKRIRKSKIRAR 339 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL- 602 ++ + + FE+G+P++ F+D N +P G ++ SNLC+EI + E Sbjct: 340 EFFQLLAEIQFESGYPYLMFEDTVNKANPI--KGRINMSNLCSEILQVNQPTEYHEDLSY 397 Query: 603 ------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 S NL + D A TI TA+R L V D+ + ++ K N A Sbjct: 398 KHIGKDISCNLGSLNIARTMDSPNFAQTIETAIRGLTAVSDMSHIRSVPSIDKGNQESHA 457 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y S EA++ + +++HA+ AS +LA ER + F S Sbjct: 458 IGLGQMNLHGYLARERIYYGSEEALDFTNIYFYTVAYHAMRASNQLAIERASRFKGFDES 517 Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + I + + + ++ W L+ V G+ N N A+ Sbjct: 518 HYASGSYFSKYIEQVWLPKTPRVQTLFTDACIPIPTQQDWAALRHSVMEHGLYNQNLQAV 577 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N Sbjct: 578 PPTGSISYINHATSSIHPIVSQIEIRKEGKIGRVYYPAPYMTN----------------- 620 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A++I P +I++ + + +DQ SL L+ + + + Sbjct: 621 --------------ENLDYYQDAYQIGPEKMIDTYAAATQHVDQGLSLTLFFRDTATTRD 666 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 667 INKAQIYAWKKGIKTLYYIR 686 >gi|197284314|ref|YP_002150186.1| ribonucleotide-diphosphate reductase subunit alpha [Proteus mirabilis HI4320] gi|194681801|emb|CAR41038.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis HI4320] Length = 708 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 170/735 (23%), Positives = 300/735 (40%), Gaps = 73/735 (9%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 S L+ + + L +++ N + R+ + H+++ Sbjct: 4 SIEQLDYHALNAMLNLYDEQGNIQFDKDKLATHHFFRQ-----HVNQNTVFFHDLK---- 54 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +++ + E + L ++ +LG Y Y L +G Sbjct: 55 EKLDFLVQQHYYEAQVLEQYDFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGE 114 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA K A + + S F +TPT N G + +L S Sbjct: 115 RYLERYEDRVCMVALTLAQG---NTKLATHLVDEIISGRFQPATPTFLNCGKKQRGELVS 171 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ T +R GA I +S GV+P +K+ Sbjct: 172 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKM 231 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 232 LEDAFSYANQLGARQGAGAVYLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITF 291 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + +N LFSP +V ++ + Y A+ + +KI A A ++ Sbjct: 292 ELAKRNEDMYLFSPYDVERVYGVPMSEISISEKYTEMVNNAEIRK----KKIKARAFFQT 347 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------ 602 + + FE+G+P+I F+D N +P G ++ SNLC+EI +S+ E Sbjct: 348 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGH 405 Query: 603 -GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + D A T+ A+R L +V + ++ +K N AIGLG Sbjct: 406 DISCNLGSMNIAMAMDSPDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQ 465 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQG 719 M L I Y S E ++ + ++++A+ AS +LA E + + F+ S + G Sbjct: 466 MNLHGYLAREGIYYGSEEGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATG 525 Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + + + ++ + ++ ++ W +LK + T G+ N N AI PT + Sbjct: 526 EYFDKYLSKQWLPKTQKVHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGS 585 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G F+ N Sbjct: 586 ISYINHSTSSIHPIVAPIEIRKEGKIGRVYYPAPFMTN---------------------- 623 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + + A+EI +I++ ++ + IDQ SL L+ + + + ++ Sbjct: 624 ---------ENRHFYQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQ 674 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 675 IYAWRKGIKTLYYIR 689 >gi|320450284|ref|YP_004202380.1| ribonucleoside-diphosphate reductase subunit alpha [Thermus scotoductus SA-01] gi|320150453|gb|ADW21831.1| ribonucleoside-diphosphate reductase, subunit alpha [Thermus scotoductus SA-01] Length = 556 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 157/587 (26%), Positives = 238/587 (40%), Gaps = 106/587 (18%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E + +F ++ + +TP N G + SC+ T V DD I A+ E M++K Sbjct: 51 EGFSRKFQEYMAKGWYSLATPIWANYGLKRGLPISCYGTYVEDDTASILRAVAEIGMMSK 110 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG +R GA I NG+S G F + + NQG R+G AYL Sbjct: 111 QGGGTSVYLGALRPRGAPIRD-NGESNGSYAFASLFDRVIEVFNQGSTRRGQCAAYLPIE 169 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+ +++ + + + D +++ Sbjct: 170 HPDLEEWFKIQR----EGGEIQSLFWGVSVGDAWLEEAIAGDR----------------- 208 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 E W K+L E G P+I F+D N ++P+ Sbjct: 209 ---EKR----------------------ERWAKVLKSRTEVGIPYIFFRDNANRQAPEVF 243 Query: 576 VG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 +H+SNLCTEI L S EE+ VC L S+NLL FD K + T L Sbjct: 244 KKLGKTIHASNLCTEIMLPSGPEESFVCCLSSLNLL------HFDEWKDTDAVETLTIFL 297 Query: 633 DNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D+V+D +E+A + +RAIG+G++G+ S L IP + EA+ + + Sbjct: 298 DSVLDDFIEKAEGIPYMERAVRFAKRYRAIGIGVLGWHSYLQSKGIPLENAEALFLNNLI 357 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + I A A S W + P D + L E R Sbjct: 358 FKTIREKAEEA----------------SRWLRKRHPEDELADLMERR------------- 388 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 N+ +AIAPT + + I G VS SI+P N Y+K + F Sbjct: 389 -------------NATLLAIAPTKSSSFILGQVSPSIEPYTSNYYLKDLQKARIAFRSPF 435 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L L+ + +E + + +GS+ +++ + D+ K + T EI L+ A RQK Sbjct: 436 LEELLQAKGKNEEKVWRSILERNGSVQHLDFLSDEEKDVFKTFSEISQKTLVNLAIARQK 495 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 +IDQ QSLNL + E K ++ +Y AW GLK YY S SA Sbjct: 496 YIDQGQSLNLVIHPEAPPKDVNELYLHAWRGGLKALYYQFSASAAQA 542 >gi|205353757|ref|YP_002227558.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273538|emb|CAR38524.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628865|gb|EGE35208.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 714 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 178/725 (24%), Positives = 295/725 (40%), Gaps = 79/725 (10%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCR-------YIEEGVKAR 267 +Y + A L + ++ A + F + EG Sbjct: 15 DYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLETLVREGYYDD 74 Query: 268 LLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + ++ L +LG Y Y L +G R E + VA Sbjct: 75 AVLARYNRSFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVA 134 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + + S F +TPT N G + +L SCFL + D++ I Sbjct: 135 LTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 191 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 192 RAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 251 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ FLD ++ D++ R ++ IPD+ + +NA LFSP Sbjct: 252 QGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP 311 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 +V YGK F + + V + I+A ++ + + FE+G+P+I F Sbjct: 312 YDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMF 368 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHF 611 +D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 369 EDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV- 425 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 D + T+ TA+R L V D+ + ++ N AIGLG M L Sbjct: 426 ----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLARE 481 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PID 724 I Y SPEA++ + I++HA+ S+ LA+ER ++ F S + G + D Sbjct: 482 GIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSHYASGDYFTQYLQDD 541 Query: 725 SIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 A+VR A + +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 542 WQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 601 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 602 IHPIVAKIEIRKEGKTGRVYYPAPFMTN-------------------------------E 630 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K+ Sbjct: 631 NLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS 690 Query: 900 TYYLR 904 YY+R Sbjct: 691 LYYIR 695 >gi|330013347|ref|ZP_08307618.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] gi|328533535|gb|EGF60258.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. MS 92-3] Length = 701 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 165/637 (25%), Positives = 272/637 (42%), Gaps = 68/637 (10%) Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L +E + VA+ LA E++A + + S F Sbjct: 88 TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLA---RGDEQQARQLTEEILSGRF 144 Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N+G + +L SCFL + D++ I A+ L+K GG+ + +R Sbjct: 145 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 204 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GV+P +K+ D NQ G R+GA +L H D+ FLD R+ Sbjct: 205 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 264 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529 D++ R ++ IPD+ + ++A LFSP D+ LYGK F A + Q Sbjct: 265 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 321 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579 E R I A L++++ + FE+G+P+I F+D N SP + V Sbjct: 322 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 381 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 + + E + E CNLGS+N+ D TI TAVR L V D+ Sbjct: 382 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 436 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ N AIGLG M L I Y SPE ++ + +++HA+ S Sbjct: 437 DIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 496 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749 ++LA+ER ++ F+ S + G + + + + E ++ R W +L Sbjct: 497 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRESWRQL 556 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 + V G+ N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 557 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 616 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ A+EI P +I++ + + +D Sbjct: 617 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 645 Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 Q SL L+ + + + ++ AW G+KT YY+R Sbjct: 646 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 682 >gi|315654324|ref|ZP_07907232.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 51333] gi|315491359|gb|EFU80976.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 51333] Length = 733 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 168/722 (23%), Positives = 283/722 (39%), Gaps = 83/722 (11%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + + AR + + + +K + +EEG E Sbjct: 54 DADREAARQYFLQHVNKNTVFFHDLREKLDY-------------LVEEGYYEAETLEQYN 100 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332 + L + +LG Y Y L +G R E + RV M Sbjct: 101 FEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLA 157 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 E+ AV+ + + + +TPT N+G + ++ SCFL + D++ I + Sbjct: 158 RGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSAL 217 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GV+P +K+ D+ NQ G R+GA Y Sbjct: 218 QLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 277 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 + +H D+ FLD ++ D++ R ++ +PD+ + LFSP D+ Sbjct: 278 ISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVE 334 Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F E Y D I+ +KI A ++ + + FE+G+P+I F+D N Sbjct: 335 RVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNR 393 Query: 570 RSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 +P + V ++ E + + CNLGS+N+ + Sbjct: 394 ANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKTLESP----- 448 Query: 620 KLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 A +I A+R L V D+ + ++ N AIGLG M L I Y S E Sbjct: 449 DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDE 508 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV 732 ++ + +F+A+ AS LA ERG + F+ S + G + D A+V Sbjct: 509 GLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKV 568 Query: 733 RDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ + + W L +K G+ N N AI PT +I+ I + SI P + Sbjct: 569 RELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKI 628 Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 ++ G +L N+ + A Sbjct: 629 EIRKEGKIGRVYYPAPYLTND-------------------------------NLDYYQDA 657 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + K +DQ SL L+ + + + ++ AW G+K+ YY+R R Sbjct: 658 YEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQ 717 Query: 908 AT 909 A Sbjct: 718 AA 719 >gi|194445580|ref|YP_002042052.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404243|gb|ACF64465.1| ribonucleoside-diphosphate reductase, alpha subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 714 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 174/680 (25%), Positives = 285/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 60 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 119 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 120 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 176 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 177 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 236 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 237 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 296 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP D+ YGK F + + V + I+A ++ Sbjct: 297 FRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 354 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 412 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 467 IGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQS 526 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 527 RYASGDYFTQYLQDDWQPKTAKVRTLFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 586 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 587 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 630 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 675 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+K+ YY+R Sbjct: 676 INKAQIYAWRKGIKSLYYIR 695 >gi|46255233|ref|YP_006145.1| ribonucleotide-diphosphate reductase subunit alpha [Thermus thermophilus HB27] gi|46198082|gb|AAS82492.1| ribonucleoside-diphosphate reductase alpha chain [Thermus thermophilus HB27] Length = 559 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 165/587 (28%), Positives = 245/587 (41%), Gaps = 103/587 (17%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 E +F ++ + +TP N G R SC+ T V DD I A+ E M++K Sbjct: 51 EGFGRKFLEYVARGWYSLATPIWANYGLRRGLPISCYGTYVEDDTASILRAVAEVGMMSK 110 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG +R GA I NG+S G F + + NQG R+G AYL+ Sbjct: 111 QGGGTSLYLGRLRPRGAPIRD-NGESNGSFAFASLFDRVIEVFNQGSTRRGQCAAYLDVE 169 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+EE+L +++ + + + D +++ + Sbjct: 170 HPDLEEWLSIQR----EHSPVQSLFWGVSVGDRWLEEMIAG------------------- 206 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 GE + W KML E G P++ F+D N ++P+ Sbjct: 207 ---------------DGEKRAR--------WAKMLKSRAEVGIPYLFFRDNANQKAPEVF 243 Query: 576 ---VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 + +SNLCTEI L SS EE+ VC L S+NLL ++ K + T V L Sbjct: 244 RALGKTIWASNLCTEIMLPSSEEESFVCCLSSLNLL------HYEEWKDTDAVETLVIFL 297 Query: 633 DNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 D+V+D +E+A + +RAIGLG++G+ S L IP SPEA E Sbjct: 298 DSVLDDFIEKAEGIPYMERAVRFAKRYRAIGLGVLGWHSYLQSQRIPLESPEAFRRNAEI 357 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 + I A AS L + R P Sbjct: 358 FKTIRERAEEASRWLRK---------------------------------------RHPE 378 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 DEL + RN+ +AIAPT + A I G VS SI+P N Y+K N F Sbjct: 379 DELAGVGELKERRNATLLAIAPTKSSAFILGQVSPSIEPYTSNYYLKDLQKARVPFKNPF 438 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L L+++ +E + + H+GS+ +++ + D+ K + T EI M L+ A+ RQK Sbjct: 439 LEEVLREKGKDEEKVWRSILEHNGSVQHLDFLTDEEKAVFKTFAEISQMTLVNLAASRQK 498 Query: 866 WIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 IDQ QSLNL + E + ++ + AW GLK YY S+S Sbjct: 499 HIDQGQSLNLVIHPEAPPRDVNALVLHAWRSGLKALYYQFSQSVAQA 545 >gi|239917557|ref|YP_002957115.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Micrococcus luteus NCTC 2665] gi|239838764|gb|ACS30561.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Micrococcus luteus NCTC 2665] Length = 725 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 175/679 (25%), Positives = 281/679 (41%), Gaps = 79/679 (11%) Query: 258 RYIEEGVKARLLHESMMDFDLVY--LANDLKYERDFAF-EYLGLQILYDRYFLH-INGSR 313 Y+++ F+ V K + F F +LG Y Y L +G R Sbjct: 75 DYLQKNDYYETETFEQYPFEFVRGLFDRAYKAK--FRFPTFLGAFKFYTSYALKTFDGKR 132 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + VA+ LA + E V + + + F +TPT NSG + +L SC Sbjct: 133 YLERYEDRVAVVALHLARGDQELATHLV---DEMIAGRFQPATPTFLNSGKKQRGELVSC 189 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I + L+K GG+ T +R GA I +S GVIP +K+ Sbjct: 190 FLLRIEDNMESIARGINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLL 249 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 250 EDSFSYANQLGARQGAGAVYLNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 309 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKM 549 +N LFSP D+ +YG F E Y D IK + ISA ++ + Sbjct: 310 LAKKNEDMYLFSP---YDVERVYGVPFSEISVTEKYYEMVDDARIKKTK-ISAREFFQTI 365 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P++ F+D N +P G + SNLC+EI + + Sbjct: 366 AEIQFESGYPYVVFEDTVNAANPI--KGRITMSNLCSEILQVSEASEYNEDLSYAHVGQD 423 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D ++ TA+R L V + + ++ K N AI Sbjct: 424 ISCNLGSMNIAKT-----MDSPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAI 478 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L H+ Y S E ++ + + FHA+ AS +A E + F+ S Sbjct: 479 GLGQMNLHGYLAREHVHYGSEEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSK 538 Query: 716 WDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G F +AE+ + + ++ W ELK V G+ N N A+ Sbjct: 539 YASGEFFDKYTDQEWAPATERVAELFADAGIALPTQDDWRELKASVMEHGIFNRNLQAVP 598 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G +L N Sbjct: 599 PTGSISYINNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTN------------------ 640 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + + A+EI +I++ + + +DQ SL L+ + + + L Sbjct: 641 -------------ENLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDL 687 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 688 NRAQIYAWRKGIKTIYYIR 706 >gi|13508063|ref|NP_110012.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma pneumoniae M129] gi|2500208|sp|P78027|RIR1_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|1674206|gb|AAB96160.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma pneumoniae M129] Length = 721 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 172/742 (23%), Positives = 307/742 (41%), Gaps = 83/742 (11%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 ++ DLE+ + ++ Y KV F ++ E + KP+ H + Sbjct: 12 TQEDLESYISLNA---------YTKVYGDFKMDLHAVEAYIQEHVKPKTKVFHSTKER-- 60 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 ++ + + R ++G Y+ Y L +G Sbjct: 61 --LDFLVKNDYYDENIINMYSFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGK 118 Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370 +E + RV M + +A++ + + F +TPT N+ + + S Sbjct: 119 WYLENYED---RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVS 175 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C+L + D++ I A+ L+K GG+ T +R GA I +S G+IP +K+ Sbjct: 176 CYLLRIEDNMESIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSGIIPIMKL 235 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G+R+GA YL H DV +FLD ++ D++ R ++ IPD+ Sbjct: 236 LEDSFSYANQLGQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITF 295 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP +V + + + + YE A++ K F I+A ++ + Sbjct: 296 TLAKNNEEMALFSPYDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVA 353 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------- 599 + FE+G+P+I F D N R H + SNLC+EI S+ E Sbjct: 354 ELHFESGYPYILFDDTVNRR--NAHPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDI 411 Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIG 657 CNLGS+N+ + + + ++ A+ LD V ++ +K N + A+G Sbjct: 412 SCNLGSLNIAKAMESGP----EFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALG 467 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L I Y SPEA++ + +++HA AS ELA E+G + +F+ + + Sbjct: 468 LGAMNLHGFLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFA 527 Query: 718 QGVFPIDSIGLLAEV-----------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G + I + + + + +R W EL ++ G+ NS+ +AI Sbjct: 528 DGSYFDKYIKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAI 587 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + V+ V ++ Sbjct: 588 APTGSISYLSSCTPSLQPVVSPVEVRKEGRLGRIYVPAY--------------------- 626 Query: 827 HDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 ++ D + A+E+ P +I A+ Q+ +DQA SL L++ + + + Sbjct: 627 ---------QLNKDSYPFYKDGAYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRD 677 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 L+ Y A+ G + YY+R R Sbjct: 678 LNKAYIYAFKKGCSSIYYVRVR 699 >gi|126700616|ref|YP_001089513.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium difficile 630] gi|115252053|emb|CAJ69889.1| Ribonucleoside-diphosphate reductase subunit alpha (Ribonucleotide reductase large subunit) [Clostridium difficile] Length = 699 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 158/699 (22%), Positives = 293/699 (41%), Gaps = 59/699 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L++ ++ + + L E I+EG ++ + + + + + + Sbjct: 25 KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHK 83 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 Y+ + Y Y L N +E + VA+ L + A+ + + Sbjct: 84 FEFQSYMSVNKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGNKDLALNLADKIV 140 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+ R ++ SCFL +V D GI A+ + L+K GG+ + + Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G + GV+ K+ + NQ G R+G+ YL +H D E +D + Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD FM+ +N F P V + + E E E Y+ Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378 Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638 EI + E S NL + N D + ST+ TA+R L V D Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + SN +IGLG M L +I Y S +A++ ++ + +++I AS Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498 Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748 +++A E + F S + +G + + +VR + ++ W + Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L VK G+ N+ MA+APT +I+ + + SI P + + V++ FL Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 ++ M+ + +A+ +D +I+ + Q +D Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647 Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q S L++ + + + + Y A+ GLK+ YY R++ Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|251781890|ref|YP_002996192.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390519|dbj|BAH80978.1| ribonucleoside-diphosphate reductase alphachain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 728 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 181/780 (23%), Positives = 315/780 (40%), Gaps = 95/780 (12%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE-----------MQCLYPEYFCRYIE 261 PN + ++ L ++ + + M E I+ Sbjct: 3 HPNESYLSFNALTR--FKKTDGSYHFDSDAIAVERYLDEQISPNLVMFPSLEEKLAYLIK 60 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQ 318 EG + + + D + A Y++D+ F +G Y Y L +G E + Sbjct: 61 EGYYEQAIFDLYPDDVIKE-AFQYAYQQDYRFLNLMGAMKFYQSYALKTLDGKYYLETVE 119 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377 RV M + + F +TPT N+G + + SC+L + Sbjct: 120 D---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIE 176 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ I A+ + L+K GG+ T +R +GA I ++ G++P +K+ D+ Sbjct: 177 DNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKEIENQATGIVPVMKLLEDSFSY 236 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL H +V FLD ++ D++ R + IPD+ + +N Sbjct: 237 ANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENK 296 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFET 556 LFSP D+ +YGK+ E + + ISA L++ + + FE+ Sbjct: 297 EMALFSP---YDIKRVYGKDMSDISITEEYNKLLANPAIKKTYISARKLFQLIAELHFES 353 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETAVCNLGS 604 G+P++ F D N R+P G + SNLC+EI S E CNLGS Sbjct: 354 GYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGS 413 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 IN+ D + I T++R LD V + +K N + A+GLG M Sbjct: 414 INIAEAMT----DAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANHAVGLGAMNL 469 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L H+ Y S EAV+ D +++HA AS +LA+E+GA++ F+ S + G + Sbjct: 470 HGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFK 529 Query: 724 DSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + A+ + + W L + ++T G+ N++ +A+APT +I+ + Sbjct: 530 QYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYL 589 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + S+ P + V+ + V ++ Sbjct: 590 SSCTPSLQPVVAPVEVRKEGNLGRIYVPAY------------------------------ 619 Query: 836 RIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893 +I + + A+E+ P +I+ + QK +DQA SL L++ + + + L+ Y QA+ Sbjct: 620 QINQENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + YY+R R L D +S S+ + EC+ C Sbjct: 680 KLKCASIYYVRVR-------------QEVLAGSEQYDEDSQLDSVDKNGLTDTINECQSC 726 >gi|307329251|ref|ZP_07608416.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces violaceusniger Tu 4113] gi|306885150|gb|EFN16171.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces violaceusniger Tu 4113] Length = 953 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 120/622 (19%), Positives = 230/622 (36%), Gaps = 32/622 (5%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFG 385 G + E E L F ++P FN GT + Q+S+CF+ +V D + I Sbjct: 115 GYFASPADAEIFDHELTYALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESILD 174 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E M+ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 175 WYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 233 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H DVE F++ + + R D + + V Sbjct: 234 RAAKMVVLDVDHPDVEAFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRV 293 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 ++ G F + R + ++ A +L+RKM + P I + Sbjct: 294 NDTFMKAVESGSSFGLR--------SRLTGEPIEEVDAKSLFRKMAEAAWACADPGIQYD 345 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYD 619 D N G + +SN C+E + + CNL S+NL+ N +FD + Sbjct: 346 DTINHWHTSPESGRITASNPCSEYMH----LDNSSCNLASLNLMKFLQDDDAGNQRFDAE 401 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + A + + +D I EK ++ R +G+G + L Y S Sbjct: 402 RFAKVVELVITAMDISICFADFPTEKIGETTRAFRQLGIGYANLGALLMATGHAYDSDGG 461 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----E 735 +A ++ + S ELA G Y + + A + + Sbjct: 462 RALAGAITSLMTGTSYKRSAELAAVVGPYDGYARNADAHKRVMKQHSDANAIAKRMDDLD 521 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKS 793 + + W ++ + + G RN+ +APT TI + + ++P + + K Sbjct: 522 APVWAAATEAWQDVLRLGEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKL 581 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF-- 849 G +VN+ + LK+ +E + + + G++ + + + ++ A Sbjct: 582 VGGGSMQIVNNTVPKALKRLGYQEEQVEAIVAHIADHGNVIDAPGLKPEHYEVFDCAMGE 641 Query: 850 -EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 I PM + + Q ++ A S + + E + ++++ IY + W +G+K R Sbjct: 642 RSISPMGHVRMMAAAQPFLSGAISKTVNMPESATVEEIEEIYFEGWKLGIKALAIYRDNC 701 Query: 908 ATSVEKSTLKGVDGKLNAVPVT 929 S K + V Sbjct: 702 KVGQPLSAKKKEEKAQAEPEVE 723 >gi|170765802|ref|ZP_02900613.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] gi|170124948|gb|EDS93879.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia albertii TW07627] Length = 714 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 179/732 (24%), Positives = 304/732 (41%), Gaps = 73/732 (9%) Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCL----------YPE 254 ++ L ++ +Y + A + L + K ++A M + Sbjct: 5 TAERLTQETMDYHALNA---MLNLYDNAGRIQFDKDRQAVDAFMATHVRPNTVTFSSQQQ 61 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 + EG + ++ L +LG Y Y L +G R Sbjct: 62 RLNWLVNEGYYDEGVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGKR 121 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + F RV M E A + + + S F +TPT N G + +L SCF Sbjct: 122 Y--LEDFADRVTMVALTLAQGDETLATQLADEMLSGRFQPATPTFLNCGKQQRGELVSCF 179 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 180 LLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLE 239 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 240 DAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHL 299 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 +NA LFSP D+ +YGK F +IA Y + + + I+A ++++ Sbjct: 300 AKENAQMALFSP---YDVERVYGKPFADIAISEYYDELVANKHIRKKYINARDFFQRLAE 356 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGS 604 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ + S Sbjct: 357 IQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASAYDENLDYARTGHDIS 414 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + + D A T+ TA+R L V D+ + ++ + N AIGLG M Sbjct: 415 CNLGSLNIAHTMDSPNFARTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNL 474 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF- 721 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 475 HGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEYF 534 Query: 722 ----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + A+V + A + +R W +L+ V G+ N N A+ PT +I+ Sbjct: 535 SQYLQGNWQPKTAKVGELFAHSSITLPTREMWAQLRDDVMRYGIYNQNIQAVPPTGSISY 594 Query: 775 ICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ +G F+ N Sbjct: 595 INHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------- 629 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + ++ A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 630 ------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYA 683 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 684 WRKGIKTLYYIR 695 >gi|323126701|gb|ADX23998.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 728 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 182/780 (23%), Positives = 316/780 (40%), Gaps = 95/780 (12%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHE-----------MQCLYPEYFCRYIE 261 PN + ++ L ++ + + M E I+ Sbjct: 3 HPNESYLSFNALTR--FKKTDGSYHFDSDAIAVERYLDEQISPNLMMFPSLEEKLAYLIK 60 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSRI-EMPQ 318 EG + + + D + A Y++D+ F +G Y Y L +G E + Sbjct: 61 EGYYEQAIFDLYPDDVIKE-AFQYAYQQDYRFLNLMGAMKFYQSYALKTLDGKYYLETVE 119 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377 RV M + + F +TPT N+G + + SC+L + Sbjct: 120 D---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISCYLLRIE 176 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ I A+ + L+K GG+ T +R +GA I G ++ G++P +K+ D+ Sbjct: 177 DNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSY 236 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G+R+GA YL H +V FLD ++ D++ R + IPD+ + +N Sbjct: 237 ANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQLAKENK 296 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFET 556 LFSP D+ +YGK+ E + + ISA L++ + + FE+ Sbjct: 297 EMALFSP---YDIKRVYGKDMSDISITEEYNKLLANPAIKKTYISARKLFQLIAELHFES 353 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETAVCNLGS 604 G+P++ F D N R+P G + SNLC+EI S E CNLGS Sbjct: 354 GYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDICCNLGS 413 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 IN+ D + I T++R LD V + +K N + A+GLG M Sbjct: 414 INIAEAMT----DAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANHAVGLGAMNL 469 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPI 723 L H+ Y S EAV+ D +++HA AS +LA+E+GA++ F+ S + G + Sbjct: 470 HGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYADGSYFK 529 Query: 724 DSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + A+ + + W L + ++T G+ N++ +A+APT +I+ + Sbjct: 530 QYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPTGSISYL 589 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + S+ P + V+ + V ++ Sbjct: 590 SSCTPSLQPVVAPVEVRKEGNLGRIYVPAY------------------------------ 619 Query: 836 RIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893 +I + + A+E+ P +I+ + QK +DQA SL L++ + + + L+ Y QA+ Sbjct: 620 QINQENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAF 679 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + YY+R R L D +S S+ + EC+ C Sbjct: 680 KLKCASIYYVRVR-------------QEVLAGSEQYDEDSQLDSVDKNGLTDTINECQSC 726 >gi|257215692|emb|CAX82998.1| ribonucleotide reductase M1 [Schistosoma japonicum] Length = 384 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 131/374 (35%), Positives = 197/374 (52%), Gaps = 15/374 (4%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQD--VSSKIVLSETYKNMYDGLSESDLET 200 K+ ++ DG + + +++ + C GL + + V +Y G++ +L+ Sbjct: 15 DKIYVVKRDGRSEAIHCEKITKRIRALCYGLNESYIDVDAVTKRVVSGLYPGVTTVELDN 74 Query: 201 ALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYI 260 + ++I K YA + AR + L +E + + LY R Sbjct: 75 LAAETCASMITKHHEYAILAARLAVSNLHKETKSRFSDVVE--------DLYGYINPRTK 126 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + + + + L N + Y+RD+ + Y G + L Y L ING E PQ Sbjct: 127 KHSPLVSEDLRNFVRENAERLDNAIDYQRDYTYNYFGFKTLERSYLLKINGKVHERPQHM 186 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD- 379 MRV++G+ T + A+E YNL+S F ++PTLFNSGT PQLSSCFL T+ DD Sbjct: 187 LMRVSVGIH---TSDIESAIETYNLMSEKWFTHASPTLFNSGTPKPQLSSCFLITMKDDS 243 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + GI+ L+E A+++K +GG+G + +R LG +I GTNG+S G++P L+V N TA V+ Sbjct: 244 IEGIYDTLKECAIISKNAGGIGVNVHNIRSLGTYIAGTNGESNGLVPMLRVFNSTARYVD 303 Query: 440 Q-GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G KR GA YLE WH DV +F+++RKNTG + R D+ A WIPDLFM+RV N Sbjct: 304 QGGNKRPGAFAIYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVESNDK 363 Query: 499 WTLFSPDEVSDLHD 512 WTL P E + Sbjct: 364 WTLMDPHECPSISR 377 >gi|262043917|ref|ZP_06017005.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038771|gb|EEW39954.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 701 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 165/637 (25%), Positives = 272/637 (42%), Gaps = 68/637 (10%) Query: 294 EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 +LG Y Y L +E + VA+ LA E++A + + S F Sbjct: 88 TFLGAWKFYTSYALKTFDGKHYLEDFAERSVMVALTLA---RGDEQQARQLTEEILSGRF 144 Query: 352 MCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N+G + +L SCFL + D++ I A+ L+K GG+ + +R Sbjct: 145 QPATPTFLNAGKQQRGELISCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREA 204 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I +S GV+P +K+ D NQ G R+GA +L H D+ FLD R+ Sbjct: 205 GAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFLDTRRENA 264 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQA 529 D++ R ++ IPD+ + ++A LFSP D+ LYGK F A + Q Sbjct: 265 DEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQL 321 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVV 579 E R I A L++++ + FE+G+P+I F+D N SP + V Sbjct: 322 VADERVRKRWIRARDLFQRLAEIQFESGYPYIMFEDTVNRASPVAGRVTMSNLCSEILQV 381 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 + + E + E CNLGS+N+ D TI TAVR L V D+ Sbjct: 382 STPSAYNEDLSYAHIGEDISCNLGSLNIAHT-----MDSPDFGRTIATAVRALTAVSDMS 436 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ N AIGLG M L I Y SPE ++ + +++HA+ S Sbjct: 437 DIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTS 496 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDEL 749 ++LA+ER ++ F+ S + G + + + + E ++ R W +L Sbjct: 497 MQLARERGQRFAGFEQSRYASGAYFDKYLQEEWQPKTERVRTLFARAGISLPDRERWRQL 556 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 + V G+ N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 557 RDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNN 616 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ A+EI P +I++ + + +D Sbjct: 617 D-------------------------------NLALYQDAYEIGPEKIIDTYAEATRHVD 645 Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 Q SL L+ + + + ++ AW G+KT YY+R Sbjct: 646 QGLSLTLFFPDTATTRDINKAQIYAWKKGIKTLYYIR 682 >gi|91791299|ref|YP_552249.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] gi|91701180|gb|ABE47351.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] Length = 858 Score = 307 bits (787), Expect = 5e-81, Method: Composition-based stats. Identities = 146/669 (21%), Positives = 250/669 (37%), Gaps = 76/669 (11%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFM 352 + + +L ++Y E F RVA G+A E +EK F++ + Sbjct: 19 QVSIDVLLEKYAK--GDEFTET--EIFARVAKGIAQAEQPELREKYERVFFDNMMRGAIG 74 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPD--------DLYGIFGALQENAMLAKYSGGLGNDW 404 L++CF+ V D GI+ AL+E A + GG+G D+ Sbjct: 75 AGRIMSAAGTGIKATLANCFVQPVGDAIQGVDTEGYPGIYEALREAAETMRRGGGVGYDF 134 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G+ + GT + G ++ V + + V G R+GA ++ H D+ EF+ Sbjct: 135 SRIRPRGSVVKGTASSASGPCSYIDVFDASCKTVESAGARRGAQMGVMKISHPDILEFIT 194 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ + R ++ N + I D FM V N W L E S G Sbjct: 195 AKR----EVGRWNNFNVSVGIVDGFMAAVEANEMWPLVHKAEPSVEQQRAGAYLRE---- 246 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + V+R++ A +W ++ ++ P I F D N+ + +V + ++N Sbjct: 247 ------SDGLWVYREVPAAEIWDTVMKSCYDFAEPGIVFLDLMNLDNNLSYVETIEATNP 300 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDIN 639 C E L C+LG I L + FD + + ++ R LDNV+ + Sbjct: 301 CAEQPLPPY----GCCDLGPIILPKFVSRAFTERAAFDDEGFKAAVKIQTRFLDNVLSVT 356 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +E+ +K R IG G G L +L I Y S E VE + + A AS+ Sbjct: 357 HWPLEQQRKEAEAKRRIGAGFTGLGDMLAMLGIRYNSIEGVEFSRHVALMMRDAAYEASI 416 Query: 700 ELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 +LA E+G + F + L + LK R++ G+R Sbjct: 417 DLAIEKGPFPLFDADKY-------------------LKKGTFASRLPKSLKDRIRRHGIR 457 Query: 760 NSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGD----FTVVN---SFLVNEL 810 NS+ ++IAPT T++ S I+P + Y + GD + VV+ + + Sbjct: 458 NSHLLSIAPTGTVSLAFADNASNGIEPPFALAYTRKKRVGDGHVNYNVVDHAFRVFLETV 517 Query: 811 KQRDLWDEAMISDLKY------HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 ++L + + +Y + + IP + TA E+ + + Q Sbjct: 518 CAQELRAPLLEAVSRYQPAFEVAGKTYQVKDCIPPSI----VTAQEMSAAEHLAVMAAVQ 573 Query: 865 KWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 ID A S + + + +Y QAW LK R S Sbjct: 574 PLIDTAISKTVNVPEDYPYDDFKNLYMQAWKANLKGLATYRPNKTLGAVLSVGTAATEAK 633 Query: 924 NAVPVTDPN 932 + Sbjct: 634 SVEVKDIDP 642 >gi|255102107|ref|ZP_05331084.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-63q42] Length = 699 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 158/699 (22%), Positives = 291/699 (41%), Gaps = 59/699 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L++ + + + L E I+EG ++ + + + + + + Sbjct: 25 KEALSSYIEAFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHK 83 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 Y+ Y Y L N +E + VA+ L + A+ + + Sbjct: 84 FEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGDKDLALNLADKIV 140 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+ R ++ SCFL +V D GI A+ + L+K GG+ + + Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G + GV+ K+ + NQ G R+G+ YL +H D E +D + Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD FM+ +N F P V + + E E E Y+ Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378 Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638 EI + E S NL + N D + ST+ TA+R L V D Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + SN +IGLG M L +I Y S +A++ ++ + +++I AS Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498 Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748 +++A E + F S + +G + + +VR + ++ W + Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L VK G+ N+ MA+APT +I+ + + SI P + + V++ FL Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 ++ M+ + +A+ +D +I+ + Q +D Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647 Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q S L++ + + + + Y A+ GLK+ YY R++ Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|254976541|ref|ZP_05273013.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-66c26] gi|255093926|ref|ZP_05323404.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile CIP 107932] gi|255315678|ref|ZP_05357261.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-76w55] gi|255518339|ref|ZP_05386015.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-97b34] gi|255651456|ref|ZP_05398358.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-37x79] gi|260684516|ref|YP_003215801.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium difficile CD196] gi|260688174|ref|YP_003219308.1| ribonucleoside-diphosphate reductase subunit alpha [Clostridium difficile R20291] gi|306521279|ref|ZP_07407626.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-32g58] gi|260210679|emb|CBA65437.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile CD196] gi|260214191|emb|CBE06440.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile R20291] Length = 699 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 158/699 (22%), Positives = 291/699 (41%), Gaps = 59/699 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L++ ++ + + L E I+EG + + + + + + + Sbjct: 25 KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYLKEVINQYSIDVIKNIYDMIDKHK 83 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 Y+ Y Y L N +E + VA+ L + A+ + + Sbjct: 84 FEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGDKDLALNLADKIV 140 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+ R ++ SCFL +V D GI A+ + L+K GG+ + + Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G + GV+ K+ + NQ G R+G+ YL +H D E +D + Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD FM+ +N F P V + + E E E Y+ Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378 Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638 EI + E S NL + N D + ST+ TA+R L V D Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + SN +IGLG M L +I Y S +A++ ++ + +++I AS Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498 Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748 +++A E + F S + +G + + +VR + ++ W + Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L VK G+ N+ MA+APT +I+ + + SI P + + V++ FL Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 ++ M+ + +A+ +D +I+ + Q +D Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647 Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q S L++ + + + + Y A+ GLK+ YY R++ Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|321309598|ref|YP_004191927.1| ribonucleotide reductase of class Ib (aerobic) subunit alpha [Mycoplasma haemofelis str. Langford 1] gi|319801442|emb|CBY92088.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit [Mycoplasma haemofelis str. Langford 1] Length = 700 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 180/700 (25%), Positives = 301/700 (43%), Gaps = 66/700 (9%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E + K + +++ + E IE L S D +++ + + +K Sbjct: 31 EAIAEYEKYVDENFATDLEGI--ERIRWLIENNFYVADLINSFTDAEVIEIIDLVKSYNF 88 Query: 291 FAFEYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 Y+ ++ YD Y L + + +E + A+ L ++ A + + Sbjct: 89 RFKSYMSIKKFYDSYALRTDDKKRFLERYDDRIIACALFLGRRD---FNFAKKLAKSMIE 145 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TPT N+G + +L SCFL V D L I + L+K GG+ + + + Sbjct: 146 QKYQPATPTFSNAGKKRSGELVSCFLLEVDDSLNSINYIISTAMQLSKIGGGVAINLSKL 205 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I + GVIP +K+ + +Q G+R GA AYL +H D+ EFLD +K Sbjct: 206 RARGAQIKHIEAAASGVIPVIKILENVFDYADQLGQRPGAGAAYLSIFHWDLIEFLDCKK 265 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +P+ F+ + A + LF P V + ++ + + + YE Sbjct: 266 INADEKSRIQTLSLGLLVPNKFIDLCIEGADYYLFEPYTVFKKYGVHMSDMD-MSKWYEV 324 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 A +I + + ISA + + FE+G+P+I + D N ++P + +G + SNLCTE Sbjct: 325 LAHDPDI-LKKSISARDVLNNIAKTQFESGYPYIIYIDTANKKNPLKKLGQIKMSNLCTE 383 Query: 588 ITLNS------------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I CNLGS+N+ + F L TI A+R L V Sbjct: 384 IFQIQETSTIKDYGDLDDIRYDVSCNLGSLNINSLFEG----EKNLEETIEVAMRALSMV 439 Query: 636 IDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 DI+ +K+N ++GLG M L + Y SPEAVE A I+F + Sbjct: 440 SDISSIANAPGVRKANSELHSVGLGAMNLAGFLAKNKLHYDSPEAVEFASVLFAAINFFS 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWD 747 I AS +AQER + F+ S + GV+ + + + ++ M +R W Sbjct: 500 IKASCLIAQERKKTFEGFEKSDYYSGVYFLKYLENDYLPKSDVVKELFKDMKLPTREDWQ 559 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 EL K+VK G+ N+ +AIAPT TI+ + + SI P L + + FL Sbjct: 560 ELAKKVKECGLYNAYRLAIAPTQTISYLNNSTPSIAPVVDVLETRLYGNSLTYYPMPFL- 618 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 ++ + +A+ +D +I+ S Q+ + Sbjct: 619 ---------NKDTWY---------------------YYKSAYLLDQKAIIDMVSAIQEHV 648 Query: 868 DQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 DQ S LY+ + S + L Y AW GLK+ YY R++ Sbjct: 649 DQGISTVLYVTNNTSTRDLVRFYIYAWHKGLKSLYYTRTK 688 >gi|269986513|gb|EEZ92798.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 756 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 160/641 (24%), Positives = 277/641 (43%), Gaps = 95/641 (14%) Query: 299 QILYDRYF-LHINGSRIE-MPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFMCS 354 +I Y++Y + G+R E P + R++ LA E + +K+ +E FY LL F F+ Sbjct: 20 RIFYEKYSLSDLEGNRTEKTPIEMWKRISRELASVEKDDKKKDIENNFYRLLEDFKFVPG 79 Query: 355 TPTLFNSGTRHP-QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 LF +G H L +C + D L I +E A Y GG+G D + VR + Sbjct: 80 GRILFGAGANHKATLLNCHHLPITKDSLEAIHDTAKEMARTYSYGGGVGIDISIVRPERS 139 Query: 413 HIHGTNGKSQGV-IPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + + F+K+ + T + R+GA L+ H D+E F+ ++K Sbjct: 140 SSGIMQQDFRLASVSFMKLYSITTG-IIGQTGRRGAWMITLDVTHPDIESFVTIKK---- 194 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 D++ N + + D FM V + +TL +E Sbjct: 195 DKKSVRYANISVKVYDDFMDAVENDKIFTLHFKNE------------------------- 229 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV--VHSSNLCTEIT 589 +++ ++I A+ LW+K + TG P I F D SP ++ + +N C+E Sbjct: 230 -KVEFKKEIKALDLWKKRIDTAVNTGDPGIMFWDRMKSESPTEYDEKMAIKGTNPCSEQP 288 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINC--HT 642 L + C+LG+INL N D ++ L T+R VR LDNV+D + H Sbjct: 289 LENY----GACDLGAINLDYFVKNQCTDKAEVDWENLDKTVRYGVRFLDNVLDYSYNRHA 344 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +++ R IGLG+MG + L +++ Y S +A+E D M+ I A S LA Sbjct: 345 LKEQADETVYARRIGLGIMGLANMLISMNLRYDSDKAIEFVDSLMKKIKETAYDESSNLA 404 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 E+G++ +F ++ + +L ++ G+RN+ Sbjct: 405 VEKGSFPAFVA--------------------EKHLQRNFVKRLDKKLLDKISKNGLRNAC 444 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS---GDFTVVNSFLVNELKQRDLWDEA 819 + +APT +I+++ GVS I+P Y + + S G F V++ F+ + + + D++ Sbjct: 445 ILTVAPTGSISSMAGVSGGIEPICALSYTRRSESLSEGKFEVLDPFVKRYMDKFKIRDKS 504 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-D 878 L ++ TA +IDP + ++ + QK ID + S + L Sbjct: 505 T--------------------LPELFVTAHKIDPFFRVKMQATIQKHIDSSISSTVNLSA 544 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + + +D IYR AW +G K+ R S + K+T + Sbjct: 545 DTDAETVDKIYRYAWKLGCKSITVYREGSKDDILKATDEKP 585 >gi|296134979|ref|YP_003642221.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thiomonas intermedia K12] gi|295795101|gb|ADG29891.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thiomonas intermedia K12] Length = 811 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 143/633 (22%), Positives = 249/633 (39%), Gaps = 78/633 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 + L +L ++Y + RVA LA+ E R+ + + F+ + Sbjct: 5 DISLDVLAEKYAKGDEHTIA----DIHTRVARALAV-EEADPARSEALFRQALADGFVPA 59 Query: 355 TPTLFNSGTRHP-QLSSCFLTTV-------PDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +GT L +CF+ V D I+ AL + A + GG+G D++ Sbjct: 60 GRIMSAAGTDIQATLINCFVQPVGDSVSDDKDGKPSIYKALAQAAETMRRGGGVGYDFSR 119 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GAH+ GT+ ++ G + F++V + + V G R+GA L H D+E F+ + Sbjct: 120 IRPAGAHVGGTHSRASGPLSFMRVFDASCETVESAGSRRGAQMGVLRADHPDIEAFIHAK 179 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 D+ + N + + FM+ V +A L D G Sbjct: 180 -----DQGAFKNFNLSVGVSAAFMQAVENDAQIDLVHKARPGDDQLAAG----------- 223 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + V+R + A LW +++ ++ P I F D N + + ++N C Sbjct: 224 ARQRADGLWVYRSVRARDLWDQIMQSTYDHAEPGILFLDTANADNNLYYCETFEATNPCA 283 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCH 641 E L + C LGSINL + FD + + R AVR+LDNV+D+ Sbjct: 284 EEFLP----DYGCCCLGSINLTRFVRDPFTPQARFDAEGFQAVTRVAVRMLDNVLDVTYW 339 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + + R IGLG +G A +L + Y S +A A + + A +ASV+L Sbjct: 340 PLVEQHNEAQNKRRIGLGFLGLGDACVMLGLRYDSDDARRFAADMARTLRDAAYAASVDL 399 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E+GA+ F + F ++ + L+ + G+RNS Sbjct: 400 AKEKGAFPLFDAKKYLDSGF--------------------AKRLPEALRADIAAHGIRNS 439 Query: 762 NCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 + +A+APT TI+ S I+P++ +Y + + + R+ Sbjct: 440 HLLAVAPTGTISLAFADNASNGIEPAFSWVYTRKKR-----------MADNTTREYEVAD 488 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD- 878 L G ++ +P TA E+ ++ Q +ID + S + + Sbjct: 489 HAWRLYRSMG--RDMSALPPA----FVTALEMSAADHMKMLQVVQPFIDTSISKTVNVPA 542 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 + +Y QAW GLK R + Sbjct: 543 DYPYDDFKDLYLQAWKAGLKGLATYRPNAVLGA 575 >gi|89900981|ref|YP_523452.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] gi|89345718|gb|ABD69921.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] Length = 969 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 154/628 (24%), Positives = 252/628 (40%), Gaps = 80/628 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEF-YNLLSSFHFMCSTPT 357 ++L ++Y + +++ Q RVA LA E ++++ E + F+ + Sbjct: 23 EVLIEKYSKGSEKTIVDVNQ----RVAHALAQVEAPEQQKQWETKFLQALQNGFLPAGRI 78 Query: 358 LFNSGTR-HPQLSSCFLTTVPDDL-------YGIFGALQENAMLAKYSGGLGNDWTPVRG 409 +GT L +CF+ V D + GI+ AL E A + GG+G D++ +R Sbjct: 79 QSAAGTDLAATLINCFVQPVGDSIAHVEDGHPGIYTALTEAAETMRRGGGVGYDFSRIRP 138 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA + T + G + +++V + + V G R+GA L H D+EEF+ + Sbjct: 139 RGAWVGSTQSSASGPVSYMRVFDRSCETVESAGARRGAQMGVLRCDHPDIEEFIHAK--- 195 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D + N + I D FM+ V ++A + L E G Sbjct: 196 --DTGDLKNFNISVGITDTFMQAVQKDAAFALVHRAEPGPAQKEAGAH----------HV 243 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 I V+R + A LW +++ ++ P + F D N + + + S+N C E Sbjct: 244 TDSGIWVYRTLQARELWDQIMRSTYDHAEPGVLFLDHINRDNNLSYCETIASTNPCAEQP 303 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIE 644 L C LGSI+L FD R A R+LDNV+D+ + Sbjct: 304 LPPY----GCCCLGSIDLTRFIKQPFEKAASFDKAAFVEVARVATRMLDNVLDVTVWPLP 359 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + ++ + R IGLG G AL +L++ Y + A ++A + E + A ASV+LAQE Sbjct: 360 QQQEEARSKRRIGLGYTGLGDALVMLNLRYDTQAARDMARDISELMRDTAYDASVDLAQE 419 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 RGA+ F L+ G R + LK+RV+T G+RNS+ + Sbjct: 420 RGAFPLFNADLYLTGQ-------------------RFASRLPPALKERVRTHGLRNSHLL 460 Query: 765 AIAPTATIANIC--GVSQSIDPSYQNLYVKSNM--SGDFTVVNSFLVNELKQRDLWDEAM 820 +IAPT TI+ S I+P++ Y + G F + V + R Sbjct: 461 SIAPTGTISLAFADNASNGIEPAFSWSYTRKKRMADGSFK---EYAVEDHAWRLY----- 512 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 ++ L TA E+ + +ID A S + + Sbjct: 513 -----------RHLYGKDTALTPAFVTALEMSAQAHEAMVAAVAPFIDTAISKTVNVPVN 561 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +Y +AW GLK R S Sbjct: 562 YPYADFQNLYMEAWQSGLKGLATYRPNS 589 >gi|305680926|ref|ZP_07403733.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium matruchotii ATCC 14266] gi|305659131|gb|EFM48631.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium matruchotii ATCC 14266] Length = 719 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 169/670 (25%), Positives = 278/670 (41%), Gaps = 64/670 (9%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EM 316 +E + + L + +LG Y Y L +G+R E Sbjct: 71 LVENKYYDPEVLARYDFDFIKDLFKQAYAHKFRFRTFLGAYKYYTSYTLKTFDGTRYLER 130 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375 + RV M + A + + + F +TPT N G + SCFL Sbjct: 131 FED---RVCMVALGLADGDTELARHLVDEIMTGRFQPATPTFLNMGKAQRGEPVSCFLLR 187 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ D+ Sbjct: 188 IEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKHIENQSSGVIPVMKLLEDSF 247 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 248 SYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKVRIKTLSLGVVIPDITFELARN 307 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTML 553 N+ LFSP +V +YGK F E+Y+ + I+ +KI+A ++ + + Sbjct: 308 NSDMYLFSPYDVQ---RVYGKAFADISITEHYQEMVEDPRIRK-KKINARVFFQTLAEIQ 363 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSIN 606 FE+G+P+I ++D N +P G V+ SNLC+EI +S S N Sbjct: 364 FESGYPYIMYEDVVNRANPI--AGRVNMSNLCSEILQVNSPSTYHDDLTYDEVGEDISCN 421 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 L + D A T+ TA+R L V + + H++ +K N AIGLG M Sbjct: 422 LGSLNIAMAMDSPDFAQTVETAIRGLTAVSEQTSIHSVPSIRKGNEHAHAIGLGQMNLHG 481 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF--- 721 L I Y S EA++ + + + + AS +LAQER ++ F+ S + G + Sbjct: 482 YLGRERIHYGSEEALDFTNAYFAAVLYQCLRASNKLAQERGQSFGGFEDSEYASGAYFDR 541 Query: 722 --PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 P D A+V++ + + WD LK V T G+ N N A+ PT +I+ I Sbjct: 542 FSPADFAPKTAKVQELFDASSITVPTAAEWDALKSDVMTHGLYNRNLQAVPPTGSISYIN 601 Query: 777 GVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + SI P + ++ G + N Sbjct: 602 NSTSSIHPIASRIEIRKEGKIGRVYYPAPHMDNT-------------------------- 635 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894 + A+EI +I++ + K++DQ SL L+ + + + ++ AW Sbjct: 636 -----NLEYFQDAYEIGYEKVIDTYAAATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWR 690 Query: 895 MGLKTTYYLR 904 G+KT YY+R Sbjct: 691 KGIKTLYYIR 700 >gi|300769756|ref|ZP_07079638.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300492664|gb|EFK27850.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 721 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 150/683 (21%), Positives = 270/683 (39%), Gaps = 84/683 (12%) Query: 265 KARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321 L ++ +D ++ Y R DF F ++ Y +Y L + + + F Sbjct: 63 HDYLETPAIDKYDFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFI 121 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 RVAM E A++ + + + +TP+ N+G +L SCFL DD+ Sbjct: 122 DRVAMNALYFADGNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDM 181 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + L++ GG+G + + +RG G I +G + GV+P +K+ D+ NQ Sbjct: 182 NSIGRTINSALQLSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQ 241 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+R+GA YL +H D+ FL +K D++ R ++ +PD F + + +A Sbjct: 242 LGQRQGAGVVYLSVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMY 301 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHP 559 LFSP + YG F E + + I A L ++ + E+G+P Sbjct: 302 LFSP---YGVEREYGVPFSYVDVTKEYDNMVKNPNIRKTKIKARDLENEISKLQQESGYP 358 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEIT------------LNSSSEETAVCNLGSINL 607 ++ D N G + SNLC+E+ CNLGS N+ Sbjct: 359 YVVNIDTANR--ENPIDGKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNI 416 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666 + + ++ VR L V D + + +K N IGLG MG + Sbjct: 417 VNLMTSP-----DFGHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAF 471 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--- 722 + Y S EAV+ + +++ + AS E+A+E + +F+ S + G + Sbjct: 472 FAKNQMEYGSKEAVDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKY 531 Query: 723 --IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D + + ++ W+ LK+ V G+ + N MA+AP +I+ I + Sbjct: 532 TTQDWQPKYDKTAALFDSIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTT 591 Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S+ P + + G +L N+ Sbjct: 592 ASLHPIINRVEERQEKKIGKIYYPAPYLSNDTI--------------------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----------------SG 882 + +A++ D +I+ + Q+ +DQ SL L++ + Sbjct: 625 ----NYYKSAYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTT 680 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 681 RDLNILRNYAYRKGIKSIYYIRT 703 >gi|255307976|ref|ZP_05352147.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile ATCC 43255] Length = 699 Score = 307 bits (786), Expect = 6e-81, Method: Composition-based stats. Identities = 158/699 (22%), Positives = 292/699 (41%), Gaps = 59/699 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L++ ++ + + L E I+EG ++ + + + + + + Sbjct: 25 KEALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSIDVIKNIYDMIDKHK 83 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 Y+ Y Y L N +E + VA+ L + A+ + + Sbjct: 84 FEFQSYMSANKFYQNYALKSNDGKEILETYNDKVLIVALTLG---NGDKDLALNLADKIV 140 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+ R ++ SCFL +V D GI A+ + L+K GG+ + + Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G + GV+ K+ + NQ G R+G+ YL +H D E +D + Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD FM+ +N F P V + + E E E Y+ Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MDEWYD 319 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + +I+ ++I+ + K+ M E+G+P++ + D N + VG++ SNLC Sbjct: 320 KLVNDSDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDVGIIKMSNLCC 378 Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638 EI + E S NL + N D + ST+ TA+R L V D Sbjct: 379 EIFQYQTPSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + SN +IGLG M L +I Y S +A++ ++ + +++I AS Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498 Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748 +++A E + F S + +G + + +VR + ++ W + Sbjct: 499 MKIAIERNQTFEGFDKSEYVKGRNSKVLSKYYEQSYLPKSEKVRALFEGIYIPTKEDWTK 558 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L VK G+ N+ MA+APT +I+ + + SI P + + V++ FL Sbjct: 559 LLDEVKEKGIYNAYLMAVAPTQSISYVQNATSSIMPITEPVEVRTYGDSTTIYPMPFLT- 617 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 ++ M+ + +A+ +D +I+ + Q +D Sbjct: 618 --------NDNML----------------------YYQSAYRMDMRKVIDLVATVQNHVD 647 Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q S L++ + + + + Y A+ GLK+ YY R++ Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|332162771|ref|YP_004299348.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606877|emb|CBY28375.1| ribonucleotide reductase of class Ib (aerobic),alpha subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667001|gb|ADZ43645.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 716 Score = 307 bits (786), Expect = 7e-81, Method: Composition-based stats. Identities = 171/738 (23%), Positives = 304/738 (41%), Gaps = 79/738 (10%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S S+L+ + + L + + + ++ AR + + + +K + Sbjct: 12 SSSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKLDY---- 67 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 +EEG + + E + L ++ +LG Y Y L Sbjct: 68 ---------LVEEGYYEKEVLEKYDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKT 118 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + VA+ LA ++ A + + + F +TPT N G + Sbjct: 119 FDGKRYLERYEDRVCMVALTLAAG---NQQVARDLVEEIITGRFQPATPTFLNCGKKQRG 175 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I ++ L+K GG+ T +R +GA I +S GVIP Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLTNIREVGAPIKRIENQSSGVIP 235 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIP 295 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545 D+ + N LFSP D+ +YG + + + + ++ + KI A Sbjct: 296 DITFELAKNNEEMYLFSP---YDVEQVYGVPLSEISVSEKYREMVDDKRIHKSKIKAREF 352 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------A 598 ++ + + FE+G+P++ F+D N +P G ++ SNLC+EI +S E Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNSPTEYNDDLSYRH 410 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 + S NL + + D +I TA+R L V D+ N ++ +K N AIG Sbjct: 411 IGKDISCNLGSLNIAHIMDSPDFGKSIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIG 470 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L I Y S EA++ + +++HAI AS +LA ER + F S + Sbjct: 471 LGQMNLHGYLARERIFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERGNHFKGFDESAY 530 Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G + + + + ++ + W L++ V G+ N N A+ P Sbjct: 531 ASGEYFTKYTEQSWQPKTAKVSALFAQAGISVPDQQDWAALRQSVMEHGIYNQNLQAVPP 590 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + ++ G ++ N+ Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + A++I P +I++ + + +DQ SL L+ + + + ++ Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDIN 679 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 680 KAQIYAWKKGIKTIYYIR 697 >gi|293364079|ref|ZP_06610815.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma alligatoris A21JP2] gi|292552569|gb|EFF41343.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma alligatoris A21JP2] Length = 726 Score = 307 bits (786), Expect = 7e-81, Method: Composition-based stats. Identities = 172/742 (23%), Positives = 300/742 (40%), Gaps = 88/742 (11%) Query: 197 DLETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 D + + ++++ + + + AR + K + Sbjct: 12 DFDEYIALNAKSKLFTFGKNDFFQDIEAARLYM-------------KHNALPNTREFESV 58 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310 E F I+ L D+ L ++G Y+ Y L + Sbjct: 59 KERFQYLIKHNYYEAELVNKYSFEDIEALREYALSFHFKFTSFMGALKFYNAYCLKSFDD 118 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 +E + + A+ + + A + + + +TPT N+G + + Sbjct: 119 TEYLERYEDRALMNALFIG---NGNVEVAKNTLEEIMTGRYQPATPTFLNAGKKQRGEYI 175 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SC+L V D++ I A+ + L+K GG+ T +R LGA I ++ GVIP +K Sbjct: 176 SCYLLRVEDNMESIARAISTSLQLSKRGGGVALCLTNLRELGAPIKNIENQATGVIPVMK 235 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G+R+GA YL H DV FLD ++ D++ R ++ +PD+ Sbjct: 236 ILEDSFSYANQLGQRQGAGVVYLSAHHPDVMTFLDSKRENADEKIRIKSLSLGLVVPDIT 295 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N +LFSP D+ +Y K F E + + +SA + Sbjct: 296 FELAKKNEDMSLFSP---YDVEKVYKKPFSDISITKEYYNMLNNKAIKKTYVSARKFFTS 352 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS------------SEE 596 + + FE+G+P++ F D N RS G + SNLC+EI SS E Sbjct: 353 IAELHFESGYPYLLFDDTVNDRSALP--GRIIMSNLCSEIAQPSSPSTYNADLSYKTMGE 410 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNLGS+N+ + + + +I + N + + +K N +RAI Sbjct: 411 DIACNLGSMNIDKLMHAGEKFSESIYRSIYALNHISTNS---DLSSAPTIEKGNKKNRAI 467 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715 GLG M L + HI Y S EAVE D ++HA AS L ++ G + F+ + Sbjct: 468 GLGAMNLHGFLAVNHIFYNSQEAVEFTDLFFYTFAYHAFKASNRLVKDGFGKFEGFENTK 527 Query: 716 WDQGVFPIDSIGLLAEVRDE-----------LAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 + G + + E ++ ++ W EL K ++ G+ NS+ M Sbjct: 528 FATGEYFDKYTKVSDEEYKPKHASVAELFRKHNVHIPTKQEWKELSKEIQKTGLANSHLM 587 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 AIAPT +I+ + G + S+ P ++ V+ V ++ Sbjct: 588 AIAPTGSISYLSGCTPSLQPVVSDVEVRKEGKLGRVYVPAY------------------- 628 Query: 825 KYHDGSIGNIERIPDDLKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 +I D+ K+ + A+E+ PM +I+ + QK IDQA SL L++ + + Sbjct: 629 -----------KISDENKEFYKLGAYEVGPMPIIDIVAAAQKHIDQAISLTLFVKDTVTT 677 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + L+ Y A+ + YY+R Sbjct: 678 RDLNKAYIYAFSKKCASIYYVR 699 >gi|262039139|ref|ZP_06012465.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia goodfellowii F0264] gi|261746836|gb|EEY34349.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia goodfellowii F0264] Length = 712 Score = 307 bits (786), Expect = 7e-81, Method: Composition-based stats. Identities = 166/705 (23%), Positives = 296/705 (41%), Gaps = 59/705 (8%) Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 +L ++ + + + Y+ E ++ ++ + + Sbjct: 37 FQLNKDKEAVYSYFVDYVNKNTVFFHNLKEKMDYLIENDYYINFYDMYKFEEIKQVFELV 96 Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ ++ Y Y L + +E + R+A+ +A+E+ Sbjct: 97 YNKKFRFASFMSASKFYQSYALRDDSGEKFLERYED---RIAIVSLYLAQGDLSKAMEYA 153 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 +L + + +TPT NSG + +L SCFL + D+L GI A L+ GG+ Sbjct: 154 EMLINQEYQPATPTFLNSGKKRSGELVSCFLDEMGDNLSGIGYAFDSAMKLSSIGGGVSI 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + VR G I G G++ GV+P +K+ D NQ G+R GA YL +H D+ EF Sbjct: 214 NLSKVRARGESIKGVEGRASGVLPIMKIMEDIFSYANQLGQRAGAGAVYLNVFHSDINEF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K D++ R ++ +PD FM+ ++ F+P V + Y E + Sbjct: 274 LDCKKINVDEKIRIKSLSIGVIVPDKFMELAKEDEICYTFNPHTVFLEYGQYLDEMD-MN 332 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E YE+ D +K +KI+A L K+ E+G+P++ FKD N + +G V S Sbjct: 333 EMYEKLVDNPNVKK-KKINARELLIKISQTQKESGYPYLFFKDNANKEHALKEIGNVKFS 391 Query: 583 NLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 NLCTEI N EE + S NL + + +++ R A+ L V Sbjct: 392 NLCTEIMQLSEVSDINPYFEEDTIRRGISCNLGSLNIVTVMENNRIREATRAAIDSLTTV 451 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D+ N + KK+N ++GLG M L I Y S EA++ + +++++ Sbjct: 452 SDLTNIDIVPSIKKANEELHSVGLGAMNLHGFLAKNFIMYESKEALDFCNVFFMMMNYYS 511 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL--------LAEVRDELAMNRTSRLP 745 + S+E+A+ER + F S + G + I + E+ D + + ++ Sbjct: 512 LERSMEIARERGEVFKDFDKSEYANGNYFNKYIEKSYFPQTEKIKELFDGIYVP--TKED 569 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W +LK+ V G+ N+ MAIAP + + I + S+ P + V+ + Sbjct: 570 WAKLKEDVMKYGVYNAYRMAIAPNQSTSYIMNSTASVMPIVDTIEVREYGDSTTFYPMPY 629 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L N+ + +A+++D +++ S Q+ Sbjct: 630 LTND-------------------------------NYFFYKSAYDMDQKNILKLVSVIQR 658 Query: 866 WIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 +DQ S L+ + + L +Y +GLK+ YY R+R AT Sbjct: 659 HVDQGISTILFNKSTDTTRDLAKLYIYGHRLGLKSLYYTRTRKAT 703 >gi|224283651|ref|ZP_03646973.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium bifidum NCIMB 41171] Length = 698 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + Y AT+ + E I+ A + E L + Sbjct: 17 KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDGFYAHAESSGF 76 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 +LG Y Y L ++ + + F R A E+RAVE+ + + S Sbjct: 77 EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEMLSGA 135 Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N G + SCFL + D + I + L+K GG+ + +R Sbjct: 136 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 195 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 196 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 255 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R + IPD+ + + A LFSP D +YGK F Sbjct: 256 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 312 Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + ++ + I A + + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 313 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 370 Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 S CNLGS+N+ LA T+ TA+R L +V Sbjct: 371 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 424 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + +++N AIGLG M L I Y S EA++ D +++HA Sbjct: 425 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 484 Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740 AS LA E G + F S + + + + R + + Sbjct: 485 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 544 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799 + W EL+ + G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 545 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 604 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +++ N + + + A+EI ++++ Sbjct: 605 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 633 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + L+ AW G+KT YY+R Sbjct: 634 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 679 >gi|292489179|ref|YP_003532066.1| ribonucleoside-diphosphate reductase subunit alpha [Erwinia amylovora CFBP1430] gi|292900296|ref|YP_003539665.1| ribonucleoside-diphosphate reductase 2 subunit alpha [Erwinia amylovora ATCC 49946] gi|291200144|emb|CBJ47270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Erwinia amylovora ATCC 49946] gi|291554613|emb|CBA22272.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora CFBP1430] Length = 716 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 169/726 (23%), Positives = 293/726 (40%), Gaps = 78/726 (10%) Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE-EGVKARLLHESMM--- 274 A + + +Y + Q +YF +++ V+ + E + Sbjct: 10 EAAEATADYHALNAMLNLYDDNGHIQFEKDQDATRQYFIQHVIPNSVQFNSIAERLQFLV 69 Query: 275 ---DFDLVYLANDL-----------KYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 ++ L R +LG Y Y L +G R ++ Sbjct: 70 AEGYYEAEVLNAYPFEFVCSLFARATARRFRFQTFLGAWKFYTSYTLKTFDGKRY--LES 127 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPD 378 F RV M + A+ + + S F +TPT N G + +L SCFL + D Sbjct: 128 FTERVCMVALTLAKGDQPLALALADEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIED 187 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ I A+ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 188 NMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYA 247 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N Sbjct: 248 NQLGARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQQ 307 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETG 557 LFSP +V ++ L F + + + ++ R I+ ++ + + FE+G Sbjct: 308 MALFSPYDVERIYAL---PFADISISEKYHEMLADTRIRRTFINPREFFQTLAEIQFESG 364 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAH 610 +P+I F+D N +P G ++ SNLC+EI ++ E + S NL + Sbjct: 365 YPYIMFEDTVNRANPVH--GRINMSNLCSEILQVNTPTEYNDDLSYRHIGKDISCNLGSL 422 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D A T+ AVR L V D + H++ ++ N AIGLG M L Sbjct: 423 NIAHAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAR 482 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728 I Y S ++ + +++HA+ S +LA+ER +S F S + G + +G Sbjct: 483 EGIEYGSEAGLDFTNIYFYTVTYHALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQ 542 Query: 729 LAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + R + + ++ W LK+ V G+ N N AI PT +I+ I + Sbjct: 543 RWQPRTAQVAALFAKAGIEIPTQQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATS 602 Query: 781 SIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + ++ +G F+ N+ Sbjct: 603 SIHPIVSRIEIRKEGKTGRVYYPAPFMNND------------------------------ 632 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898 + + A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K Sbjct: 633 -NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIK 691 Query: 899 TTYYLR 904 T YY+R Sbjct: 692 TLYYIR 697 >gi|146329736|ref|YP_001209517.1| ribonucleotide-diphosphate reductase subunit alpha [Dichelobacter nodosus VCS1703A] gi|146233206|gb|ABQ14184.1| ribonucleotide reductase, alpha subunit [Dichelobacter nodosus VCS1703A] Length = 573 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 162/638 (25%), Positives = 264/638 (41%), Gaps = 100/638 (15%) Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEKEK 337 L + +R F L+ + ++G+ E + R A L + Sbjct: 16 NKLLPMISSDRPDFFWLNDDSRLFLQRGYLLDGTSAEKRMKEIVARAAEILPFAD----- 70 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 F++ L+ ++ S+P N G SCF + + D +Y I E M++K Sbjct: 71 FEQRFFHYLARGYYSFSSPIWSNFGLARGLPISCFGSYIGDSIYDIMRTTAEVGMMSKIG 130 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG + +R G+ I NGKS G F K+ + ++QG RKG Y++ H Sbjct: 131 GGTSAYFGAIRPRGSDIRD-NGKSDGSFNFSKLFDTVIDVISQGTSRKGQFAGYIDIEHG 189 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+EE+LD+ + M I ++ + Sbjct: 190 DIEEWLDIHT----EGNPIQLMYYGVCISHQWLAEMKAGDS------------------- 226 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 E +W K+L ETG P++ FKD N P + Sbjct: 227 -EKR----------------------RIWAKVLQRKSETGIPYLFFKDNANAGRPDVYKD 263 Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++SNLCTEI L +S EE+ VC L S+NLL + D +L AV Sbjct: 264 LNLPIYASNLCTEIMLPASEEESFVCCLSSMNLLYYEEWKNTDAVELLVYFLDAVMTEFI 323 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + +E+A++ HRA+GLG++G+ S L H+P+ S A++ +E + + Sbjct: 324 EKSADLPFLERARRFAMRHRALGLGVLGWHSYLQSQHLPFDSLAAMQKNNEIFQLLQRKT 383 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 +SAS LA+ G +G Sbjct: 384 LSASRTLAEHLGEPEILRG----------------------------------------- 402 Query: 755 TIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G RN+ M++APT + + I G VS S++P N +VK T N FLV L ++ Sbjct: 403 -YGRRNTTLMSVAPTKSSSFILGSVSPSVEPLKSNYHVKDLAKIKTTYKNPFLVALLAEK 461 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 L E + +DGS+ ++ + D+ K I T EI+ + +I+ A++RQK+IDQ QS+ Sbjct: 462 GLDTETTWESILLNDGSVQHLPDLSDEEKAIFKTFSEINQLSIIQQAAQRQKYIDQGQSI 521 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 NL + + + ++ +Y A +G+K+ YY S SA Sbjct: 522 NLMIHPDTPTRDINQLYLTAAELGVKSIYYQHSMSAAQ 559 >gi|85860286|ref|YP_462488.1| ribonucleoside-diphosphate reductase subunit alpha [Syntrophus aciditrophicus SB] gi|85723377|gb|ABC78320.1| ribonucleoside-diphosphate reductase alpha chain [Syntrophus aciditrophicus SB] Length = 551 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 156/624 (25%), Positives = 252/624 (40%), Gaps = 98/624 (15%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNL 345 + L +L +RY + G+ +E P+ F RVA ++ E + FY + Sbjct: 6 QLDDNALLVLRERYLIRDEAGTLLETPEELFRRVACSVSQGENNDPEGRSAEMEEAFYEM 65 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 ++S F+ ++PTL N+G QL++CF+ V D L IF +++ A + + GG G ++ Sbjct: 66 MTSLEFLPNSPTLMNAGRPLGQLAACFVLPVEDSLDSIFDSVKLTAKIHQTGGGTGFSFS 125 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R + T G + G + F++V N A+ QGG R+GA L H D+ EF+ + Sbjct: 126 RLRPKNDVVKSTMGVASGPVSFIRVFNCATEAIKQGGTRRGANMGILRIDHPDIMEFVAI 185 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 ++ D + N + I D FM+ +N L +P Sbjct: 186 KR----DPAELTNFNLSVAITDEFMRSYEENRDVALINPRT------------------- 222 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K K++A L R + + +G P + F D N +P HVG + ++N C Sbjct: 223 --------KKAAGKVNARELLRFIAEAAWASGEPGVIFLDAINRANPTPHVGEIEATNPC 274 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 E L C LGSINL N D+ +L VR LD+V++++ + E+ Sbjct: 275 GEQPLLPY----ESCCLGSINLSRIVRNGGIDWQRLQKLTHLGVRFLDDVVEVSTYPSEE 330 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + +R IGLG+MGF L L IPY SP+A E + I + AS LA++R Sbjct: 331 IRAMTSGNRKIGLGVMGFAHLLIRLGIPYDSPDAERTGGEIIRLIERESKIASNRLAEKR 390 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G + +FKGS+W R L + Sbjct: 391 GPFPNFKGSVW---------------DRKNLLQRNATTTTIAPTGTL------------- 422 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 + + G S ++P Y Y + G V L + K R Sbjct: 423 -------SILAGTSSGVEPIYDIRYKRILPGGIEVEVEDPLWRKAKDR------------ 463 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + +++ A+E+ P + Q +D A S + L E + Sbjct: 464 ---------PDADELRRRLFRKAYEVSPFAHLNIQRTFQSSVDNAVSKTVNLPETATADD 514 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSA 908 + IY A+ MGLK T R++S Sbjct: 515 ILDIYVAAYRMGLKGTTVFRNKSR 538 >gi|22125125|ref|NP_668548.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis KIM 10] gi|45442236|ref|NP_993775.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis biovar Microtus str. 91001] gi|108808371|ref|YP_652287.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Antiqua] gi|108811298|ref|YP_647065.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Nepal516] gi|145598905|ref|YP_001162981.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Pestoides F] gi|165925303|ref|ZP_02221135.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939924|ref|ZP_02228462.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008354|ref|ZP_02229252.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212442|ref|ZP_02238477.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167398490|ref|ZP_02304014.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421233|ref|ZP_02312986.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423147|ref|ZP_02314900.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468721|ref|ZP_02333425.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis FV-1] gi|170023363|ref|YP_001719868.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis YPIII] gi|229838203|ref|ZP_04458362.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895451|ref|ZP_04510623.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Pestoides A] gi|229898685|ref|ZP_04513830.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229901544|ref|ZP_04516666.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Nepal516] gi|270489730|ref|ZP_06206804.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294504448|ref|YP_003568510.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|21957984|gb|AAM84799.1|AE013726_2 ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis KIM 10] gi|45437100|gb|AAS62652.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis biovar Microtus str. 91001] gi|108774946|gb|ABG17465.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Yersinia pestis Nepal516] gi|108780284|gb|ABG14342.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Yersinia pestis Antiqua] gi|145210601|gb|ABP40008.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Yersinia pestis Pestoides F] gi|165912143|gb|EDR30782.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922910|gb|EDR40061.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992736|gb|EDR45037.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206373|gb|EDR50853.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166960722|gb|EDR56743.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050994|gb|EDR62402.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057317|gb|EDR67063.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749897|gb|ACA67415.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis YPIII] gi|229681473|gb|EEO77567.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Nepal516] gi|229688233|gb|EEO80304.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229694569|gb|EEO84616.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701606|gb|EEO89633.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis Pestoides A] gi|262366434|gb|ACY62991.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D182038] gi|270338234|gb|EFA49011.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis KIM D27] gi|294354907|gb|ADE65248.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis Z176003] gi|320016141|gb|ADV99712.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 716 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 170/738 (23%), Positives = 300/738 (40%), Gaps = 79/738 (10%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S+S+L+ + + L + + + ++ AR + + + +K + Sbjct: 12 SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKIDY---- 67 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 IEEG + + + + L ++ +LG Y Y L Sbjct: 68 ---------LIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKT 118 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + RV M T + A E + S F +TPT N G + Sbjct: 119 FDGKRYLERYED---RVCMVALTLATGNQTLARELVEEIISGRFQPATPTFLNCGKKQRG 175 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I ++ L+K GG+ + +R +GA I +S GVIP Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 235 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 295 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545 D+ + N LFSP D+ +YG + + + ++ + KI A Sbjct: 296 DITFELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREF 352 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--- 602 ++ + + FE+G+P++ F+D N +P G ++ SNLC+EI ++ E Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRR 410 Query: 603 ----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 S NL + D +I A+R L V ++ N ++ +K N AIG Sbjct: 411 IGKDISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIG 470 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L + Y S EA++ + +++HAI AS +LA ER + F S + Sbjct: 471 LGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDY 530 Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G F I + + + + ++ W L++ V G+ N N A+ P Sbjct: 531 ASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPP 590 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + ++ G ++ N+ Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + A++I P +I++ + + +DQ SL L+ + + + ++ Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 679 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 680 KAQIYAWKKGIKTIYYIR 697 >gi|331695964|ref|YP_004332203.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudonocardia dioxanivorans CB1190] gi|326950653|gb|AEA24350.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudonocardia dioxanivorans CB1190] Length = 954 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 129/630 (20%), Positives = 226/630 (35%), Gaps = 27/630 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + + E A E +L F ++P FN GT Q+S+CF+ V D + I Sbjct: 127 GYFATDEDAEIFAHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDTMESILN 186 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 187 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 245 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF++ + R D + + V + Sbjct: 246 RAAKMVVLDVDHPDIEEFVETKAKEEAKVRVLRDAGFDMDLGGADITSVQ------YQNA 299 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + D + + E R GE V + A L+R + +E P I + Sbjct: 300 NNSVRVTDEFMRAVEEGTSFGLRGRMTGE--VIDSVDARTLFRGIAQAAWECADPGIQYD 357 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623 N G + +SN C+E + + CNL S+NLL + FD ++ Sbjct: 358 GTINDWHTTPESGRITASNPCSEYMH----LDNSSCNLASLNLLTFLGDDGMFDAERFRR 413 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I E + R +G+G + L Y S +A Sbjct: 414 AVEFIITAMDISICFADFPTEPIGDTTRKFRQLGIGYANLGALLMATGHAYDSEGGRALA 473 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 ++ A S ELA G Y + + +VR A R Sbjct: 474 ASITSLMTGAAYKRSAELAGVVGPYEGYARNAEGHQRVMRKHAAANDDVRTLAASTHIHR 533 Query: 744 L---PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798 L W E + G RN+ +APT TI + + I+P + + K G Sbjct: 534 LATITWKECLAIGERNGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLVGGGS 593 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EIDP 853 +VN + L++ E + ++Y G + + + + ++ A I P Sbjct: 594 MQIVNQTVPRALQKLGYQAEQAEAIVEYVAEHGHVIDAPGLRTEHYEVFDCAMGERSIAP 653 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 M + + Q ++ A S + + E S + ++ IY + W +GLK R Sbjct: 654 MGHVRMMAAVQPFLSGAISKTVNMPEAASVEDVERIYMEGWKLGLKALAIYRDNCKVGQP 713 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 S K +A +P Sbjct: 714 LSAGKEARKDASADAEAPVEYRPVRRRLPK 743 >gi|259508043|ref|ZP_05750943.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium efficiens YS-314] gi|259164384|gb|EEW48938.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium efficiens YS-314] Length = 701 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 159/681 (23%), Positives = 274/681 (40%), Gaps = 74/681 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LH 308 E +E + + + +D Y+ + K + F + Y Y Sbjct: 47 HEKLDYLVENNYYEKEV---LDKYDFEYIKDLFKRAYSYKFRFKSFLGAYKYYTSYTLKT 103 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + VA+ LA + A + + + F +TPT NSG Sbjct: 104 FDGRRYLERFEDRVCMVALTLA---DGDRETANALVDEIMTGRFQPATPTFLNSGKAQRG 160 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 + SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP Sbjct: 161 EPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIP 220 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 221 VMKLLEDAFSYANQLGARQGAGAVYLNAHHPDILSFLDTKRENADEKIRIKTLSLGVVIP 280 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVAL 545 D+ + +N LFSP D+ +YGK F + ++ + I+A Sbjct: 281 DITFELAKRNDDMYLFSP---YDVERIYGKPFADISVTELYNEMVDDDRIRKTKINARQF 337 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSE 595 ++ + + FE+G+P+I F+D N +P + V + + E Sbjct: 338 FQTLAEIQFESGYPYIMFEDTVNEANPIEGRVTHSNLCSEILQVSTPSTYHEDLSYDEVG 397 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654 E CNLGS+N+ D + TI TA+R L V + + ++ +K N Sbjct: 398 EDISCNLGSLNIAMAM-----DSPDFSRTIETAIRGLTAVSEQTSIDSVPSIRKGNEAAH 452 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 AIGLG M L HI Y S E ++ + + + + AS ++A+ER +++F+ Sbjct: 453 AIGLGQMNLHGYLGREHIFYGSEEGLDFTNAYFAAVLYECLRASNKIARERGQRFANFEN 512 Query: 714 SLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 S + GV+ + E+ ++ + W +LK V G+ N A Sbjct: 513 SDYASGVYFDRFDPAEFAPKTDKVKELFANSTIHTPTAEEWAQLKADVMEHGLFNRYLQA 572 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT +I+ I + SI P + ++ G + N+ Sbjct: 573 VPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND--------------- 617 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 + A+EI +I++ + K++DQ SL L+ + + + Sbjct: 618 ----------------NLEYFQDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTATTR 661 Query: 884 KLDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 662 DINRAQIYAWRKGIKTLYYIR 682 >gi|237651588|ref|YP_002899058.1| putative ribonucleoside-diphosphate redutase [Roseophage DSS3P2] gi|220898058|gb|ACL81316.1| putative ribonucleoside-diphosphate redutase [Silicibacter phage DSS3phi2] Length = 776 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 153/674 (22%), Positives = 261/674 (38%), Gaps = 84/674 (12%) Query: 299 QILYDRYFLHINGSRIEMPQ---AFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349 QI +Y Q + R+A E+E FYN L F Sbjct: 13 QIWNQKYRFKTERDGFISDQNVVDTWGRIAQACSNLPHFHNNHAEREALEARFYNALYDF 72 Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F+ + +GT R+ L +C++ T+PD L GIF L+E A+ + GG+G D++ + Sbjct: 73 KFLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G S G + F+ V + + G R+GA+ A + H D+ EF+ ++ Sbjct: 133 RPKGALVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMEFVTAKQ 192 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D R + N + D FM+ V ++ W L Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVAADSDWDLMF------------------------ 224 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + KV++ I A LW +L + P + F D N + + + ++N C E Sbjct: 225 -----DGKVYQTIKAKELWETILWNTYNYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279 Query: 588 ITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCH 641 L C LGS+NL H + D L ++RT VR+LD+V++ + Sbjct: 280 QPLPPY----GACLLGSVNLAKHVVFPFVKGQAEIDMKALEESVRTGVRILDSVVETSLF 335 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +E + R GLG+ G AL + Y + +AV D M I+ A S+++ Sbjct: 336 PLEAQRDEARFKRRQGLGVTGLADALFMTGHRYGNQQAVNFTDTIMMNIAIWAYEESIQM 395 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E G + E R++ + + + +K + G+RNS Sbjct: 396 AKEMGPAPCL----------------VPLEAREKFIQSGFMQRMPEYIKDDILEWGIRNS 439 Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 + +++APT TI+ G S +P + Y + + D T + ++D A+ Sbjct: 440 HLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT---------KRTETVYDYAV 490 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + ++ + + ATA ++ P I + QKW+D + S + L + Sbjct: 491 LKFEEHFG--ENDNPEAIWWWENYMATAQDLTPSDHIVMQAVLQKWVDSSISKTVNLPED 548 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 S +Y A+ G K R T S ++ + K V +P Sbjct: 549 ISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLS-VETKEEKPVETKVAEPAYDGDMRV 607 Query: 940 IPSSCTSDTECEVC 953 + D C Sbjct: 608 MSRPSVIDGTTYKC 621 >gi|311064960|ref|YP_003971686.1| ribonucleoside-diphosphate reductase subunit alpha NrdE [Bifidobacterium bifidum PRL2010] gi|310867280|gb|ADP36649.1| NrdE Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium bifidum PRL2010] Length = 731 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + Y AT+ + E I+ A + E L + Sbjct: 50 KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDDFYAHAESSGF 109 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 +LG Y Y L ++ + + F R A E+RAVE+ + + S Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEMLSGA 168 Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N G + SCFL + D + I + L+K GG+ + +R Sbjct: 169 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 228 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R + IPD+ + + A LFSP D +YGK F Sbjct: 289 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 345 Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + ++ + I A + + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 346 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403 Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 S CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + +++N AIGLG M L I Y S EA++ D +++HA Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740 AS LA E G + F S + + + + R + + Sbjct: 518 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799 + W EL+ + G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +++ N + + + A+EI ++++ Sbjct: 638 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + L+ AW G+KT YY+R Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712 >gi|227358545|ref|ZP_03842870.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis ATCC 29906] gi|227161256|gb|EEI46330.1| ribonucleoside-diphosphate reductase alpha chain [Proteus mirabilis ATCC 29906] Length = 714 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 173/733 (23%), Positives = 303/733 (41%), Gaps = 69/733 (9%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 S L+ + + L +++ N + R+ + H+++ Sbjct: 10 SIEQLDYHALNAMLNLYDEQGNIQFDKDKLATHHFFRQ-----HVNQNTVFFHDLK---- 60 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +++ + E + L ++ +LG Y Y L +G Sbjct: 61 EKLDFLVQQHYYEAQVLEQYDFPFIKQLFKHAYSKKFRFQSFLGAFKYYTSYTLKTFDGE 120 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA K A + + S F +TPT N G + +L S Sbjct: 121 RYLERYEDRVCMVALTLAQG---NTKLATHLVDEIISGRFQPATPTFLNCGKKQRGELVS 177 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ T +R GA I +S GV+P +K+ Sbjct: 178 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLTNLREAGAPIKRIENQSSGVVPVMKM 237 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 238 LEDAFSYANQLGARQGAGAVYLHAHHPDIYHFLDTKRENADEKIRIKTLSLGVVIPDITF 297 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + +N LFSP +V ++ + E E Y + EI+ +KI A A ++ + Sbjct: 298 ELAKRNEDMYLFSPYDVERVYGVPMSEIS-ISEKYTEMVNNAEIRK-KKIKARAFFQTLA 355 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------G 603 + FE+G+P+I F+D N +P G ++ SNLC+EI +S+ E Sbjct: 356 EIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASEYNPDLSYRQIGHDI 413 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + D A T+ A+R L +V + ++ +K N AIGLG M Sbjct: 414 SCNLGSMNIAMAMDSPDFAHTVNVAIRALTSVAQMTKIESVPSIEKGNQASHAIGLGQMN 473 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVF 721 L I Y S E ++ + ++++A+ AS +LA E + + F+ S + G + Sbjct: 474 LHGYLAREGIYYGSEEGLDFTNIYFYTVTYYALLASNQLAIETKQRFKGFEQSKYATGEY 533 Query: 722 PIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + ++ + ++ ++ W +LK + T G+ N N AI PT +I+ Sbjct: 534 FDKYLSKQWLPKTQKVHQLFSQSNIHIPTQEDWQKLKLSIMTHGIYNQNLQAIPPTGSIS 593 Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ G F+ N Sbjct: 594 YINHSTSSIHPIVAPIEIRKEGKIGRVYYPAPFMTN------------------------ 629 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + + A+EI +I++ ++ + IDQ SL L+ + + + ++ Sbjct: 630 -------ENRHFYQDAYEIGAEKIIDTYAQASQHIDQGLSLTLFFSDEATTRDVNKAQIY 682 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 683 AWRKGIKTLYYIR 695 >gi|113868364|ref|YP_726853.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia eutropha H16] gi|113527140|emb|CAJ93485.1| ribonucleotide reductase, coenzyme B12-dependent [Ralstonia eutropha H16] Length = 827 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 151/634 (23%), Positives = 256/634 (40%), Gaps = 80/634 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTP 356 ++L ++Y S ++ Q RVA LA E ++E + F F+ + Sbjct: 20 EVLIEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWSARFL-WAQENGFVPAGR 74 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDD-------LYGIFGALQENAMLAKYSGGLGNDWTPVR 408 +GT L +CF+ V D I+ A+ + A + GG+G D++ +R Sbjct: 75 INSAAGTGIQATLINCFVQPVGDSVSEPREGRPSIYTAVAQAAETMRRGGGVGYDFSAIR 134 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + T+ ++ G + F+KV + + V G R+GA L H D+E F+ + Sbjct: 135 PAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-- 192 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D+ + N + + D FM+ V + L E G AY + Q Sbjct: 193 ---DKGDLSNFNISIGVTDAFMQAVQADGEVELVHEAEPGADMIAAG-----AYRRDDGQ 244 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 V+R++ A LW +++ ++ P I F N + + + ++N C E Sbjct: 245 ------WVYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNNLYYCERIEATNPCAEQ 298 Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTI 643 L S C LGSINL FD+D A +R A R+LDNV+D+ + Sbjct: 299 PLPSY----GCCCLGSINLTRFVRQPFSPQAEFDFDAFAEVVRVATRMLDNVLDVTFWPL 354 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + + H R +GLG +G SAL +L + Y + A ++A E + A AS ELA Sbjct: 355 PEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARISERMRDDAYLASTELAV 414 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+GA+ F + + + + + L+ + G+RNS+ Sbjct: 415 EKGAFPLFDANAY--------------------LQSGFAGRLPERLRDAIARNGLRNSHL 454 Query: 764 MAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 ++IAPT TI A S I+P++ Y + + + R Sbjct: 455 LSIAPTGTITLAFADNASNGIEPAFSWTYNRKKR-----------MPDNSYRSFEVADHA 503 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 L H G ++ ++PD TA ++ + + Q +ID + S + + + Sbjct: 504 WRLYRHMG--ADMAQLPDA----FVTALQMSALDHMRMLEAVQPYIDTSISKTVNVPEDY 557 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + +Y +AW GLK R S S Sbjct: 558 PYEAFRNLYLEAWKAGLKGLATYRPNSVLGAVLS 591 >gi|12084868|ref|NP_073333.1| ribonucleotide reductase subunit 1 [Meleagrid herpesvirus 1] gi|11095872|gb|AAG30079.1|AF282130_42 UL39 ribonucleotide reductase large subunit [Meleagrid herpesvirus 1] gi|12025151|gb|AAG45777.1|AF291866_44 UL39 ribonucleotide reductase, large subunit [Meleagrid herpesvirus 1] Length = 820 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 170/684 (24%), Positives = 276/684 (40%), Gaps = 76/684 (11%) Query: 285 LKYERDF-----AFEYLGLQIL--YDRYFLHINGSRIEMPQAFFMR-------------- 323 + R + + LGLQ Y+ Y + + G + E FF+R Sbjct: 156 MDMLRFYGNIYPQLKRLGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKP 215 Query: 324 -VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-- 380 +A + F+ L+ F+ STP + G +SC+L Sbjct: 216 LIASLTNGSANWRTAFT-SFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQ 274 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + GG+G V + G++ LK+ + VA N Sbjct: 275 DTIKVITNDVVPHLLARGGIGISLQHV-----------NQKSGLMHVLKLIDSLIVATNV 323 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV------ 493 R VC YLE WH D+ L +R ++ RR ++ A W DL KR Sbjct: 324 NESRPTGVCVYLEPWHSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNG 383 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N WTLF S L LYG +FE+ YE E+ E +I + ++ Sbjct: 384 EKNVMWTLFD-SRASILSKLYGDKFEVEYERLEK-----EGIGVAQIPIRDMMFAIIKSA 437 Query: 554 FETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 TG P+I FKD CN G + SNLCTEI ++ VC L SINL Sbjct: 438 ASTGSPFILFKDACNRHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVR 497 Query: 613 N----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 +FD+D L +R A + ++D + K++ +R+IG+G+ GF +A+ Sbjct: 498 RVNGECKFDFDALRHAVRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAML 557 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727 L + + + E + A++ S E + + F S + QG D Sbjct: 558 SLGLDLEDGAVRALNKQIFELMLLEAMTVSCEFCERGLPPFPDFSDSYYAQGRLHFDGWD 617 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 ++ T+ W L+ R+ + G+ N+ +A+ PTA A + VS+ P + Sbjct: 618 ---------SVELTAPEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFS 668 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI-----GNIERIPDDLK 842 N++ K +G+ NS L+ EL+Q +E S + P+ + Sbjct: 669 NMFSKVTSAGELLRPNSQLMRELRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTR 728 Query: 843 KI-HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMG 896 + + TAFE D LI+ + R ++DQ+QS+ L++ E + ++ + A+ G Sbjct: 729 LLKYKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAG 788 Query: 897 LKT-TYYLRSRSATSVEKSTLKGV 919 LKT YY + R AT+ + G Sbjct: 789 LKTGMYYCKIRKATNTGIFSGDGE 812 >gi|86148041|ref|ZP_01066343.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] gi|85834174|gb|EAQ52330.1| ribonucleotide-diphosphate reductase alpha subunit [Vibrio sp. MED222] Length = 693 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 178/714 (24%), Positives = 296/714 (41%), Gaps = 83/714 (11%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDL 278 AR + + + +K + + Y + +Y + + F Sbjct: 19 AARQFFLQHVNQNTVFFHNLDEKIDYLLREGYYEAQVIEQYDRSFLHQIWANAYQAKFRF 78 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 K+ F L+ +E + RV M L + Sbjct: 79 RTFLGAYKF-----FTSYALKT-------RDGKRYLERFED---RVVMTALLLARGDCEF 123 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A+ + F +TPT NSG + +L SCFL + D++ I A+ + L++ Sbjct: 124 ALALMEEIIHQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRG 183 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ T +R GA I G +S GV+P +K+ D+ NQ G R+GA YL H Sbjct: 184 GGVALLLTNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHP 243 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ +FLD ++ D++ R ++ IPD+ ++ QN LFSP +V +YG Sbjct: 244 DIMQFLDTKRENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDV---ERVYGVP 300 Query: 518 FEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + + ++ + K+SA L++ + + FE+G+P+I F+D N +P Q Sbjct: 301 FSEISVTEKYHEMVDDPRIRKGKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ-- 358 Query: 577 GVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 G V+ SNLC+EI S CNLGSIN+ D +L+ T Sbjct: 359 GRVNMSNLCSEILQVNEASNYDDDLNYSHIGRDISCNLGSINIAKA-----LDGGRLSQT 413 Query: 625 IRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + TA+R L+ V +++ +++ +K N AIGLG M L I Y SPEA++ Sbjct: 414 VDTAIRALNAVSEMSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFT 473 Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + +H ++AS +LAQE+ + F+ S + G F + + ++ + S Sbjct: 474 SSYFACVLYHCLAASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFS 533 Query: 743 RLP--------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 RL W ELK+ V + G+ N AI PT +I+ I + SI P + ++ Sbjct: 534 RLDIRIPTVSEWSELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKE 593 Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G +L N + AF I P Sbjct: 594 GKIGRVYFPAPYLNN-------------------------------SNLEYFRDAFSIGP 622 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I+ + + +DQ SL L+ D+ + + ++ AW +KT YY+R R Sbjct: 623 KAIIDVYAAATEHVDQGLSLTLFFDDEVTTRDINKAQIYAWTKKIKTLYYIRMR 676 >gi|51597272|ref|YP_071463.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 32953] gi|153949726|ref|YP_001400044.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis IP 31758] gi|186896376|ref|YP_001873488.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pseudotuberculosis PB1/+] gi|51590554|emb|CAH22195.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pseudotuberculosis IP 32953] gi|152961221|gb|ABS48682.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis IP 31758] gi|186699402|gb|ACC90031.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pseudotuberculosis PB1/+] Length = 716 Score = 307 bits (785), Expect = 7e-81, Method: Composition-based stats. Identities = 171/738 (23%), Positives = 302/738 (40%), Gaps = 79/738 (10%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S+S+L+ + + L + + + ++ AR + + + +K + Sbjct: 12 SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKIDY---- 67 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 IEEG + + + + L ++ +LG Y Y L Sbjct: 68 ---------LIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKT 118 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + VA+ LA T + A E + S F +TPT N G + Sbjct: 119 FDGKRYLERYEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRG 175 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I ++ L+K GG+ + +R +GA I +S GVIP Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 235 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 295 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545 D+ + N LFSP D+ +YG + + + ++ + KI A Sbjct: 296 DITFELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREF 352 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--- 602 ++ + + FE+G+P++ F+D N +P G ++ SNLC+EI ++ E Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRH 410 Query: 603 ----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 S NL + D +I A+R L V ++ N ++ +K N AIG Sbjct: 411 IGKDISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIG 470 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L + Y S EA++ + +++HAI AS +LA ER + F S + Sbjct: 471 LGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDY 530 Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G F I + + + + ++ W L++ V G+ N N A+ P Sbjct: 531 ASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPP 590 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + ++ G ++ N+ Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + A++I P +I++ + + +DQ SL L+ + + + ++ Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 679 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 680 KAQIYAWKKGIKTIYYIR 697 >gi|254555735|ref|YP_003062152.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum JDM1] gi|308179715|ref|YP_003923843.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044662|gb|ACT61455.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum JDM1] gi|308045206|gb|ADN97749.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum subsp. plantarum ST-III] Length = 721 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 150/683 (21%), Positives = 270/683 (39%), Gaps = 84/683 (12%) Query: 265 KARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321 L ++ +D ++ Y R DF F ++ Y +Y L + + + F Sbjct: 63 HDYLETPAIDKYDFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFI 121 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 RVAM E A++ + + + +TP+ N+G +L SCFL DD+ Sbjct: 122 DRVAMNALYFADGNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDM 181 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + L++ GG+G + + +RG G I +G + GV+P +K+ D+ NQ Sbjct: 182 NSIGRTINSALQLSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQ 241 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+R+GA YL +H D+ FL +K D++ R ++ +PD F + + +A Sbjct: 242 LGQRQGAGVVYLSVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMY 301 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHP 559 LFSP + YG F E + + I A L ++ + E+G+P Sbjct: 302 LFSP---YGVEREYGVPFSYVDITKEYDNMVKNPNIRKTKIKARDLENEISKLQQESGYP 358 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEIT------------LNSSSEETAVCNLGSINL 607 ++ D N G + SNLC+E+ CNLGS N+ Sbjct: 359 YVVNIDTANR--ENPIDGKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNI 416 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666 + + ++ VR L V D + + +K N IGLG MG + Sbjct: 417 VNLMTSP-----DFGHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAF 471 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--- 722 + Y S EAV+ + +++ + AS E+A+E + +F+ S + G + Sbjct: 472 FAKNQMEYGSKEAVDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKY 531 Query: 723 --IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D + + ++ W+ LK+ V G+ + N MA+AP +I+ I + Sbjct: 532 TTQDWQPKYDKTTALFDGIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTT 591 Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S+ P + + G +L N+ Sbjct: 592 ASLHPIINRVEERQEKKIGKIYYPAPYLSNDTI--------------------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----------------SG 882 + +A++ D +I+ + Q+ +DQ SL L++ + Sbjct: 625 ----NYYKSAYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTT 680 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 681 RDLNILRNYAYRKGIKSIYYIRT 703 >gi|289705576|ref|ZP_06501968.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus luteus SK58] gi|289557805|gb|EFD51104.1| ribonucleoside-diphosphate reductase, alpha subunit [Micrococcus luteus SK58] Length = 725 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 168/671 (25%), Positives = 271/671 (40%), Gaps = 77/671 (11%) Query: 266 ARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH-INGSRI-EMPQAF 320 E+ + ++ F +LG Y Y L +G R E + Sbjct: 81 DYYETETFEQYPFEFIRGLFDRAYKAKFRFPTFLGAFKFYTSYALKTFDGKRYLERYEDR 140 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379 VA+ LA + E V + + + F +TPT NSG + +L SCFL + D+ Sbjct: 141 VAVVALHLARGDQELATHLV---DEMIAGRFQPATPTFLNSGKKQRGELVSCFLLRIEDN 197 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I + L+K GG+ T +R GA I +S GVIP +K+ D+ N Sbjct: 198 MESIARGINSALQLSKRGGGVALSLTNIREHGAPIKQIENQSSGVIPVMKLLEDSFSYAN 257 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + +N Sbjct: 258 QLGARQGAGAVYLNAHHPDIHRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKKNEDM 317 Query: 500 TLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 LFSP D+ +YG F E Y D IK + I+A ++ + + FE+G Sbjct: 318 YLFSP---YDVERVYGVPFSEISVTEKYYEMVDDARIKKTK-INAREFFQTIAEIQFESG 373 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSI 605 +P++ F+D N +P G + SNLC+EI + + CNLGS+ Sbjct: 374 YPYVVFEDTVNAANPI--KGRITMSNLCSEILQVSEASEYNEDLSYAHVGQDISCNLGSM 431 Query: 606 NLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQ 664 N+ D ++ TA+R L V + + ++ K N AIGLG M Sbjct: 432 NIAKT-----MDSPDFGRSVETAIRALTAVSVMSDIQSVPSIAKGNAASHAIGLGQMNLH 486 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI 723 L + Y S E ++ + + FHA+ AS +A E + F+ S + G F Sbjct: 487 GYLARERVHYGSEEGIDFTNMYFYAVLFHALRASNRIAIETGQRFGGFEDSKYASGEFFD 546 Query: 724 DSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 E + ++ W ELK V G+ N N A+ PT +I+ I Sbjct: 547 KYTDQEWAPATERVAGLFAEAGIALPTQDDWRELKASVMEHGIFNRNLQAVPPTGSISYI 606 Query: 776 CGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 + SI P + ++ G +L N Sbjct: 607 NNSTSSIHPVASKIEIRKEGKLGRVYYPAPYLTN-------------------------- 640 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAW 893 + + + A+EI +I++ + + +DQ SL L+ + + + L+ AW Sbjct: 641 -----ENLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDLNRAQIYAW 695 Query: 894 LMGLKTTYYLR 904 G+KT YY+R Sbjct: 696 TKGIKTIYYIR 706 >gi|215432003|ref|ZP_03429922.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis EAS054] gi|289755167|ref|ZP_06514545.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis EAS054] gi|289695754|gb|EFD63183.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis EAS054] Length = 693 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 279/680 (41%), Gaps = 72/680 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTAPTRD 654 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 655 VNQAQDYAWRKGIKTLYYIR 674 >gi|28377562|ref|NP_784454.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus plantarum WCFS1] gi|28270394|emb|CAD63297.1| ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus plantarum WCFS1] Length = 721 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 150/683 (21%), Positives = 270/683 (39%), Gaps = 84/683 (12%) Query: 265 KARLLHESMMDFDLVYLANDLKYER--DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFF 321 L ++ +D ++ Y R DF F ++ Y +Y L + + + F Sbjct: 63 HDYLETPAIDKYDFSFIEKLYDYLRSQDFHFKTFMAAYKFYAQYALKTDDGDYYL-ENFI 121 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 RVAM E A++ + + + +TP+ N+G +L SCFL DD+ Sbjct: 122 DRVAMNALYFADGNEDLAMDLADEIVHQRYQPATPSFLNAGRARRGELISCFLIQSTDDM 181 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + L++ GG+G + + +RG G I +G + GV+P +K+ D+ NQ Sbjct: 182 NSIGRTINSALQLSRIGGGVGINLSNLRGAGDPIKHIDGAASGVVPVMKLLEDSFSYSNQ 241 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+R+GA YL +H D+ FL +K D++ R ++ +PD F + + +A Sbjct: 242 LGQRQGAGVVYLSVFHPDIIAFLSAKKENADEKIRLKTLSLGVTVPDKFYELIKADADMY 301 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHP 559 LFSP + YG F E + + I A L ++ + E+G+P Sbjct: 302 LFSP---YGVEREYGVPFSYVDITKEYDNMVKNPNIRKTKIKARDLENEISKLQQESGYP 358 Query: 560 WITFKDPCNIRSPQQHVGVVHSSNLCTEIT------------LNSSSEETAVCNLGSINL 607 ++ D N G + SNLC+E+ CNLGS N+ Sbjct: 359 YVVNIDTANR--ENPIDGKIVMSNLCSEVMQVQTPSLIDDQQQYEKLGTDISCNLGSTNI 416 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHT-IEKAKKSNHTHRAIGLGLMGFQSA 666 + + ++ VR L V D + + +K N IGLG MG + Sbjct: 417 VNLMTSP-----DFGHSVEAMVRALTFVTDHSNVDVVPSIQKGNRQAHTIGLGAMGLHAF 471 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP--- 722 + Y S EAV+ + +++ + AS E+A+E + +F+ S + G + Sbjct: 472 FAKNQMEYGSKEAVDFTNIYFLLLNYWTLKASNEIARERHETFVNFEKSKYADGSYFDKY 531 Query: 723 --IDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 D + + ++ W+ LK+ V G+ + N MA+AP +I+ I + Sbjct: 532 TTQDWQPKYDKTAALFDGIFIPTKADWEALKEAVMRDGLYHQNRMAVAPNGSISYINDTT 591 Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 S+ P + + G +L N+ Sbjct: 592 ASLHPIINRVEERQEKKIGKIYYPAPYLSNDTI--------------------------- 624 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP----------------SG 882 + +A++ D +I+ + Q+ +DQ SL L++ + Sbjct: 625 ----NYYKSAYDTDMRKVIDVYAAAQQHVDQGMSLTLFMRSTIPAGLYEWKDGRTDKMTT 680 Query: 883 KKLDFIYRQAWLMGLKTTYYLRS 905 + L+ + A+ G+K+ YY+R+ Sbjct: 681 RDLNILRNYAYRKGIKSIYYIRT 703 >gi|126650013|ref|ZP_01722246.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. B14905] gi|126593185|gb|EAZ87147.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus sp. B14905] Length = 697 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 167/693 (24%), Positives = 299/693 (43%), Gaps = 71/693 (10%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQI- 300 + ++ Y I V + +D +++ ++ K D+ F + Sbjct: 35 LEYVNVRLRYFIDIEEKIRYLVDEGYYEKDFIDMYEMDFIKMLYKKAYDYNFRFPSFMSA 94 Query: 301 --LYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 YD Y + +E + + +A+ LA T KR+VE + +TP Sbjct: 95 SKFYDSYAMKSRDGEEILEKYEDRIVIIALYLAQGNTVLAKRSVE----AMMEAYQPATP 150 Query: 357 TLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T NSG + +L SCF ++ D + I + L++ GG+G + T +R LG I Sbjct: 151 TALNSGKKARGELVSCFKLSMDDSMNSIAENIGYCLELSRLGGGVGVNLTDLRPLGDPIK 210 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 ++ GVIP K+ ++ NQ G+R G+ YL +H D+E F+ +K DD+ R Sbjct: 211 EILNRASGVIPVAKLLENSFSYSNQLGQRNGSGVVYLNIFHADIENFISSKKPNADDKIR 270 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGE 533 ++T IP +F + ++ LFSP D+ +YGK E Y D + Sbjct: 271 LATLSTGIIIPSIFFDLMKRDKDIVLFSP---YDIFKVYGKRMSEISISEMYYELLDNPK 327 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE------ 587 I+ ++++A L+ ++ FE+G+P+ F D N P +++G V SNLCTE Sbjct: 328 IRKIKRLNARRLYTEVKKAQFESGYPFEIFDDNVNEVHPLKNIGRVKMSNLCTEILQVQE 387 Query: 588 ------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 + CNLGSI++ A D++ L T + + + I Sbjct: 388 TSVITDQDQPNEYGLDVSCNLGSIDIHAASKV--NDFETLIDTAMHLLTNVSQMTYIKN- 444 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + K+N ++GLG M L I Y S ++++ D ME ++++++ +S+E+ Sbjct: 445 -VPSVAKANRLMHSVGLGCMNLHGHLVTEGIMYGSKDSIDFMDRFMEAMNYYSLKSSMEM 503 Query: 702 AQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVK 754 A+E+ + F+ S + G + + E + + W+ LK+ V Sbjct: 504 AKEKAETFYRFEDSDYASGSYFDQYVNKNEEELSSAVLKALGNIPIITNKMWELLKEDVM 563 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRD 814 G+ +S +AIAPT +I+ I + SI P + + V+ L N Sbjct: 564 EYGLFHSYRLAIAPTGSISYIRSCTASISPCTERVEVRDYADSRTIYPMPHLTN------ 617 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + ++ A+++DP LI+ + QK +DQ S+ Sbjct: 618 -------------------------ENSHLYVEAYDVDPYDLIDLYAASQKHVDQGISMT 652 Query: 875 LYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY+ + + ++L +Y AW+ G+K+ YY+R R Sbjct: 653 LYVTDNWTTEQLAKVYIYAWVKGIKSVYYVRQR 685 >gi|310288087|ref|YP_003939346.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium bifidum S17] gi|309252024|gb|ADO53772.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium bifidum S17] Length = 731 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + Y AT+ + E I+ A + E L + Sbjct: 50 KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDDFYAHAESSGF 109 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 +LG Y Y L ++ + + F R A E+RAVE+ + + S Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGSEQRAVEYLDEMLSGA 168 Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N G + SCFL + D + I + L+K GG+ + +R Sbjct: 169 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 228 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R + IPD+ + + A LFSP D +YGK F Sbjct: 289 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 345 Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + ++ + I A + + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 346 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403 Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 S CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + +++N AIGLG M L I Y S EA++ D +++HA Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740 AS LA E G + F S + + + + R + + Sbjct: 518 RASHALAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799 + W EL+ + G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +++ N + + + A+EI ++++ Sbjct: 638 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + L+ AW G+KT YY+R Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712 >gi|115379423|ref|ZP_01466524.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella aurantiaca DW4/3-1] gi|310822416|ref|YP_003954774.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Stigmatella aurantiaca DW4/3-1] gi|115363562|gb|EAU62696.1| B12-dependent ribonucleoside diphosphate reductase [Stigmatella aurantiaca DW4/3-1] gi|309395488|gb|ADO72947.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Stigmatella aurantiaca DW4/3-1] Length = 926 Score = 307 bits (785), Expect = 8e-81, Method: Composition-based stats. Identities = 133/660 (20%), Positives = 232/660 (35%), Gaps = 69/660 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G +E ++E E +LL ++P FN PQ S+CF+ +V D + I Sbjct: 118 GYFAREQDRETFQAELTHLLLRQKAAFNSPVWFNVGVEEQPQCSACFINSVEDSMESILT 177 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444 + AML KY G G++ +P+R H+ G G + G + F+K + A V GGK R Sbjct: 178 LAKTEAMLFKYGSGTGSNLSPLRSSREHLTG-GGTASGPVSFMKGFDAFAGVVKSGGKTR 236 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L H D+ +F+ + N + N + + Sbjct: 237 RAAKMVILNASHPDILDFIRCKTNEEKKAWALIEAGYDASFNGDAYGSVFFQNSNNSVRV 296 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V + WT + + + A L Sbjct: 297 TDEFMRAVVNDGTWTTRAVRDGQAME---------------------------THMAREL 329 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +R++ G P + F N + +++SN C+E + + CNL S+ Sbjct: 330 FREISEAAHLCGDPGLQFDTTVNAWHTCANTARINASNPCSEYMF----LDDSACNLASL 385 Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL+ + FD + + ++ ++ + + EK +++H +R +GLG Sbjct: 386 NLMHFRTIDGCFDPVAFKHAVDVVLLAMEIIVGFSRYPTEKITRNSHDYRPLGLGYANLG 445 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L +PY SPE A + A +AS LA+ G ++ + + Sbjct: 446 ALLMACGLPYDSPEGRNYAGAITSLMCGQAYAASARLAERMGPFAGYAQNAEPMLGVIRK 505 Query: 725 SI---GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780 LA ++ + WDE G RNS +APT TI + + Sbjct: 506 HRKAGHQLAPEGVNPDLHAAQKAAWDEALALGTEHGFRNSQVTVLAPTGTIGFMMDCDTT 565 Query: 781 SIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERI 837 I+P + Y K G +VN + L++ + Y + +I + Sbjct: 566 GIEPDIALIKYKKLVGGGMLKIVNQTVPQALERLGYRQSQAQEIISYLDKNETIEGAPHL 625 Query: 838 PDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 + + AF I M I+ Q ++ A S + + + + ++ Y Sbjct: 626 KPEHLPVFDCAFKPARGKRSIQWMGHIQMMEACQPFLSGAISKTVNMPSNATVEDIEKAY 685 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 +AW GLK R + +T K A E Sbjct: 686 LEAWKRGLKAIAVYRDGCKRTQPLNTSKEQVKDTKAPAAVALEPQAKPEPKAMRKRLPDE 745 >gi|312173338|emb|CBX81593.1| ribonucleoside-diphosphate reductase alpha chain [Erwinia amylovora ATCC BAA-2158] Length = 716 Score = 306 bits (784), Expect = 9e-81, Method: Composition-based stats. Identities = 170/726 (23%), Positives = 293/726 (40%), Gaps = 78/726 (10%) Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY-IEEGVKARLLHESMM--- 274 A + + +Y + Q +YF ++ I V+ + E + Sbjct: 10 EAAEATADYHALNAMLNLYDDNGHIQFEKDQDATRQYFIQHVIPNSVQFNSIAERLQFLV 69 Query: 275 ---DFDLVYLANDL-----------KYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQA 319 ++ L R +LG Y Y L +G R ++ Sbjct: 70 AEGYYEAEVLNAYPFEFVCSLFARATARRFRFQTFLGAWKFYTSYTLKTFDGKRY--LES 127 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPD 378 F RV M + A+ + + S F +TPT N G + +L SCFL + D Sbjct: 128 FTERVCMVALTLAKGDQPLALALADEILSGRFQPATPTFLNCGKQQRGELVSCFLLRIED 187 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 ++ I A+ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 188 NMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYA 247 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N Sbjct: 248 NQLGARQGAGAVYLHAHHPDILHFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKDNQQ 307 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETG 557 LFSP +V ++ L F + + + ++ R I+ ++ + + FE+G Sbjct: 308 MALFSPYDVELIYAL---PFADISISEKYHEMLADTRIRRTFINPREFFQTLAEIQFESG 364 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAH 610 +P+I F+D N +P G ++ SNLC+EI ++ E + S NL + Sbjct: 365 YPYIMFEDTVNRANPVH--GRINMSNLCSEILQVNTPTEYNDDLSYRHIGKDISCNLGSL 422 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + D A T+ AVR L V D + H++ ++ N AIGLG M L Sbjct: 423 NIAHAMDSADFARTVEIAVRGLTAVSDQSHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAR 482 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728 I Y S ++ + +++HA+ S +LA+ER +S F S + G + +G Sbjct: 483 EGIEYGSEAGLDFTNIYFYTVTYHALRTSNQLARERATTFSGFADSRYASGEYFTQYVGQ 542 Query: 729 LAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 + R + + ++ W LK+ V G+ N N AI PT +I+ I + Sbjct: 543 RWQPRTAQVAALFAKAGIEIPTQQQWQALKEAVMQHGLYNQNLQAIPPTGSISYINHATS 602 Query: 781 SIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + ++ +G F+ N+ Sbjct: 603 SIHPIVSRIEIRKEGKTGRVYYPAPFMNND------------------------------ 632 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898 + + A++I P +I++ + + +DQ SL L+ + + + ++ AW G+K Sbjct: 633 -NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINRAQIYAWKKGIK 691 Query: 899 TTYYLR 904 T YY+R Sbjct: 692 TLYYIR 697 >gi|323359289|ref|YP_004225685.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum StLB037] gi|323275660|dbj|BAJ75805.1| ribonucleotide reductase, alpha subunit [Microbacterium testaceum StLB037] Length = 718 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 164/673 (24%), Positives = 278/673 (41%), Gaps = 60/673 (8%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +E+ + E + L + + +LG Y Y L +G Sbjct: 66 KERLDYLVEKEYYEPTVLEKYSMEFIQELNDRAYGAKFRFETFLGAFKYYTSYTLKTFDG 125 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + RV M ++ AV+ + + S F +TPT N+G +L Sbjct: 126 KRYLERFED---RVVMTALALADGDQRLAVQLVDEIISGRFQPATPTFLNAGKAQRGELV 182 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I + L+K GG+ + +R GA I +S G+IP +K Sbjct: 183 SCFLLRIEDNMESIARGINSALQLSKRGGGVALLLSNIREAGAPIKQIENQSSGIIPVMK 242 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 243 LLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVT 302 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + LFSP D+ +YGK F + + + ++ + I+A ++ Sbjct: 303 FELAKNGEDMYLFSP---YDVEKVYGKPFGDISVTEKYREMVDDPRIKKTKINAREFFQT 359 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL---NSSSEETAVCNL--- 602 + + FE+G+P+I F+D N +P G ++ SNLC+EI ++ E + Sbjct: 360 LAEIQFESGYPYIMFEDTVNKANPI--AGRINMSNLCSEILQVNTPTTYNEDLSYDTIGK 417 Query: 603 -GSINLLAHFANNQFDYDKLASTIRTAVRVLDN-VIDINCHTIEKAKKSNHTHRAIGLGL 660 S NL + D L T+ TA+R L + + ++ + N AIGLG Sbjct: 418 DISCNLGSMNIALAMDGGDLGLTVETAIRALTAVSVQSHIASVRSIEDGNDRSHAIGLGQ 477 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L H+ Y S E ++ + + FHA+ AS LA ERG + F+ S + G Sbjct: 478 MNLHGYLAREHVYYGSEEGIDFTNIYFYTVLFHALRASNRLAIERGTAFDGFENSTYASG 537 Query: 720 VFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 F + E + + ++ W ELK V+ G+ N N A+ PT +I+ Sbjct: 538 EFFDKYTDQVWEPQTAKAKELFAGVQIPTQDDWRELKASVQAHGIYNQNLQAVPPTGSIS 597 Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ G F+ N Sbjct: 598 YINNSTSSIHPIASKIEIRKEGKLGRVYYPAPFMTN------------------------ 633 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 634 -------ENLEYYQDAYEIGYEKVIDTYAAATQHVDQGLSLTLFFKDTVTTRDINKAQIY 686 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 687 AWRKGIKTIYYIR 699 >gi|310764902|gb|ADP09852.1| Ribonucleoside-diphosphate reductase subunit alpha [Erwinia sp. Ejp617] Length = 716 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 163/638 (25%), Positives = 269/638 (42%), Gaps = 60/638 (9%) Query: 289 RDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 R +LG Y Y L +G R + F RV M + A+ + + Sbjct: 98 RFRFQTFLGAWKFYTSYTLKTFDGKRY--LEGFTERVCMVALTLAKGDQPLALALMDEIL 155 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 S F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + Sbjct: 156 SGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSN 215 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD + Sbjct: 216 LREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILHFLDTK 275 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R ++ IPD+ + N LFSP +V ++ L F + + Sbjct: 276 RENADEKIRIKTLSLGVVIPDITFQLAKDNQPMALFSPYDVERIYAL---PFADVSISEK 332 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + ++ R I+ ++ + + FE+G+P+I F+D N +P G ++ SNLC Sbjct: 333 YPEMLDDTRIRRTFINPREFFQTLAEIQFESGYPYIMFEDTVNRANPVH--GRINMSNLC 390 Query: 586 TEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +EI +S E S NL + + D A T+ AVR L V D Sbjct: 391 SEILQVNSPTEYNDDLSYRRIGKDISCNLGSLNIAHAMDSADFARTVEIAVRGLTAVSDQ 450 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + H++ ++ N AIGLG M L I Y S ++ + +++HA+ Sbjct: 451 SHIHSVPSIEQGNAQSHAIGLGQMNLHGYLAREGIQYGSEAGLDFTNMYFYTVTYHALRT 510 Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDE 748 S +LA+ER +S F S + G + +G R + S+ W Sbjct: 511 SNQLARERATTFSGFADSRYASGEYFNQYVGQRWHPRTAQVAALFANAGIAIPSQQQWQA 570 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 LK+ V G+ N N AI PT +I+ I + SI P + ++ +G F+ Sbjct: 571 LKEAVMQHGLYNQNLQAIPPTGSISYINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMN 630 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ + ++ A++I P +I++ + + + Sbjct: 631 ND-------------------------------NQALYRDAYDIGPEAIIDTYAEATRHV 659 Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 660 DQGLSLTLFFRDTATTRDINRAQIYAWKKGIKTLYYIR 697 >gi|187919646|ref|YP_001888677.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phytofirmans PsJN] gi|187718084|gb|ACD19307.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia phytofirmans PsJN] Length = 861 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 146/632 (23%), Positives = 257/632 (40%), Gaps = 80/632 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 L +L ++Y + F RVA G+A E + + +VE F + L Sbjct: 29 QFSLDVLLEKYAKGDE----QSADDVFKRVARGVAEAEPQALRESVEALFVDNLRHGALG 84 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 85 AGRIMSAAGTGIAATLINCFVQPVGDAIQGVDEQGLPGIYVALLQAAETMRRGGGVGYNF 144 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA +H T+ + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 145 SAIRPKGARVHTTSSSASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 204 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM+ V ++ W L E S + Sbjct: 205 AKHSKG----RWNNFNVSVGVTDEFMRAVEEDQPWQLVHRAEPSPA---------QRAAD 251 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 RQ + G + V+ + A A+W +++ ++ P I F N + + V + ++N Sbjct: 252 DVRQREDG-LWVYSERPARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 310 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL FD+D LA RT VR LDNV Sbjct: 311 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQMKGRKPSFDWDGLAKRTRTQVRFLDNV 366 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ +++ + R IG+G G L +L + Y S E + A + + A Sbjct: 367 LDVTLWPLQQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIAQLMRDEAY 426 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA+ F + L + +++K+ ++ Sbjct: 427 RASVELARERGAFPLFDAGRY-------------------LEAGTFASRLPEDIKEAIRR 467 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y + ++ + + Sbjct: 468 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRMK-----------VMADGGRE 516 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 E L G + L +A E+ ++ + Q ++D + S Sbjct: 517 SFDVEDYAYRLYRELG------GDTNKLPDYFVSALEMSARDHLDMMAAVQPYVDTSISK 570 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + + +Y AW GLK R Sbjct: 571 TVNVPADYPFEAFESLYFDAWKNGLKGLATYR 602 >gi|86140896|ref|ZP_01059455.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Leeuwenhoekiella blandensis MED217] gi|85832838|gb|EAQ51287.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Leeuwenhoekiella blandensis MED217] Length = 600 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 151/603 (25%), Positives = 245/603 (40%), Gaps = 118/603 (19%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 + +FY + +F ++P N G + SCF + + DD+ I E M++K Sbjct: 87 FSDKFYKYMGEGYFSLASPVWSNFGKKRGLPISCFGSHIDDDMGNILYTQSEVGMMSKLG 146 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG + +R GA + NG + G + +++ + V+QG R+G YL H Sbjct: 147 GGTSGYFGKIRHRGAAVKN-NGYASGAVHIMQLFDKMVDVVSQGSVRRGRFSPYLPISHP 205 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D++EFL++ + + + +M+ + Sbjct: 206 DIKEFLEIGT----EGNSIQQLTHGVTVDSTWMQEMIDGDT------------------- 242 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV- 576 +W K+L E G+P+I + D N P + Sbjct: 243 -----------------------DKREVWAKVLQRRGEMGYPYIFYTDNANNGKPDVYKD 279 Query: 577 --GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++SNLCTEI L SS E + VC L SIN+L +D K + T V LD Sbjct: 280 KGHDIYASNLCTEIMLPSSDEWSFVCVLSSINVL------HYDKWKNTDAVETMVCFLDA 333 Query: 635 V------------------IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 V +E+A ++RA+GLG++G+ S L + S Sbjct: 334 VLTEFIDKLEEYRDSDNRDHRQTFMFMERAYNFAKSNRALGLGVLGWHSLLQSKRHAFDS 393 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL 736 EA ++ E I + AS ELA++ G + KG Sbjct: 394 QEAYDLNSEIFREIKQRSYKASEELAEKFGEPETLKG----------------------- 430 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNM 795 G RN+ AIAPT + A I G VSQ I+P + N+YVK Sbjct: 431 -------------------YGRRNATLNAIAPTTSSAFILGQVSQGIEPIWSNVYVKDIA 471 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMW 855 T+ N FL +++ + + ++ +DGS+ ++E + + K + T EID M Sbjct: 472 KIKTTIKNPFLEELFEEKGMNTPEVWRSVRDNDGSVQHLEFLTEQEKDVFKTYAEIDQMA 531 Query: 856 LIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 +I A+ RQ IDQ QS+NL + + K+++ I+ AW +GLK+ YY S +A K Sbjct: 532 IIYQAANRQNHIDQGQSINLLVHPDMPIKEINKIHITAWKLGLKSLYYQHSMNAAQKFKQ 591 Query: 915 TLK 917 + Sbjct: 592 KKE 594 >gi|326800311|ref|YP_004318130.1| ribonucleoside-diphosphate reductase, subunit alpha [Sphingobacterium sp. 21] gi|326551075|gb|ADZ79460.1| ribonucleoside-diphosphate reductase, alpha subunit [Sphingobacterium sp. 21] Length = 705 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 171/709 (24%), Positives = 300/709 (42%), Gaps = 61/709 (8%) Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 +L ++ + + ++ I+ ++ + + + Sbjct: 30 FRLYKD---KEAVRSYFLDYVNKNTVFFYTLKEKIDYLIENKYYINFYAHYSFEQMKEVY 86 Query: 286 KYERDFAFEYLGLQI---LYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 + F + + Y L + +E + + V++ LA + + A+ Sbjct: 87 DFVYAKKFRFPSFMSAFKFFQSYALRDDSGEKFLERYEDRVVCVSLYLASGDLNR---AL 143 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 E+ +L + + +TPT N+G +L SCFL + D L GI A+ E L+ GG Sbjct: 144 EYAEILINQEYQPATPTFLNAGKLRSGELVSCFLDEIGDSLSGISYAIDEAMKLSSIGGG 203 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 + + + VR G I G G+S GV+P +K+ DT NQ G+R GA YL +H D+ Sbjct: 204 VSFNISKVRARGEAIKGVEGRSSGVLPVMKIMEDTFSYANQLGQRPGAGAVYLNVFHSDI 263 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EEFLD +K D++ R ++ IPD FM+ + LF P V + Y E + Sbjct: 264 EEFLDCKKINVDEKSRIKSLSIGVIIPDKFMQIAEHDEVCYLFYPHTVYQEYGQYLDEMD 323 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + Y+ ++K RKI+A L K+ E+G+P++ FKD N +G V Sbjct: 324 -MTKMYDELVSNPKVKK-RKINARHLLIKVAQTQKESGYPYLFFKDNANRGHALNGIGSV 381 Query: 580 HSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 SNLCTEI N EE + S NL + + ++ ++TA+R L Sbjct: 382 KFSNLCTEIMQLSEVSDINPYHEEDTIRYGISCNLGSLNIATTMENRRIKEVVKTAMRSL 441 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + + +K+N ++GLG M L I Y S EA++ + ++ Sbjct: 442 TVVSDMTDIKMVPTIQKANRELHSVGLGAMNLHGFLAKNFITYESKEALDFCNVFFMMVN 501 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744 F+++ S+E+A+ERG + F+ S + G + D + V++ + R Sbjct: 502 FYSLECSMEIAKERGVTFKGFENSDYANGAYFDKYINNDYFPVSDRVKELFEGITIPDRA 561 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W++LK+ V G+ ++ MAIAP + + I + S+ P + V+ Sbjct: 562 AWEKLKQDVMQHGVYHAYRMAIAPNQSTSYIMNATASVMPVVDTIEVREYGDSTTYYPMP 621 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L N+ + +A+++D ++ S Q Sbjct: 622 YLNND-------------------------------NYFYYKSAYDMDQNNVLRLISVIQ 650 Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 + +DQ S L+ + + + L Y A MGLK+ YY R+R A+ E Sbjct: 651 RHVDQGISTILHTNSKDTTRDLAKYYIYAHKMGLKSLYYTRTRKASIDE 699 >gi|146312796|ref|YP_001177870.1| ribonucleotide-diphosphate reductase subunit alpha [Enterobacter sp. 638] gi|145319672|gb|ABP61819.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Enterobacter sp. 638] Length = 705 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 174/697 (24%), Positives = 288/697 (41%), Gaps = 63/697 (9%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E + + + E + R+L F L Sbjct: 30 EAVDAFFAAHVRPNSVPFASQDARLDYLVSEGYYEERVLTRYDRPFVLNLFERA-HASGF 88 Query: 291 FAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +LG Y Y L +G R E + VA+ LA + E A + + + S Sbjct: 89 RFQTFLGAWKYYTSYTLKTFDGKRYLESFEDRVCMVALTLAQGD---ENLAEQLMDEMLS 145 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N G +L SCFL + D++ I A+ L+K GG+ + + Sbjct: 146 ARFQPATPTFLNCGKAQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 205 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ Sbjct: 206 RESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 265 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD+ + +NA LFSP D+ +YGK F + Sbjct: 266 ENADEKIRIKTLSLGVVIPDITFQLAKENAEMALFSP---YDIERIYGKPFGDVTISELY 322 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + +V +K I+A ++ + + FE+G+P+I ++D N +P G ++ SNLC+ Sbjct: 323 DELVADDRVRKKFINARDFFQTLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCS 380 Query: 587 EITLNSSSEETAVCN-------LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +S+ S NL + + D T+ TA+R L V D+ Sbjct: 381 EILQVNSASTYDENLDYAHTGKDISCNLGSLNIAHTMDSPDFGRTVETAIRGLTAVSDMS 440 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ + N AIGLG M L I Y SPE ++ + I++HA++ S Sbjct: 441 HIRSVPSIETGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNLYFYTITWHALNTS 500 Query: 699 VELAQE-RGAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA---MNRTSRLPWDEL 749 + LA+E ++ F+ S + G + +VR A + +R W +L Sbjct: 501 MMLARERNQRFAGFEKSRYASGEYFNQYLENSWQPKTEKVRALFARAGVTLPTREMWQQL 560 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 + V T G+ N N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 561 RDDVMTFGIYNQNLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTN 620 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ A+EI P +I++ + K +D Sbjct: 621 -------------------------------ENLALYQDAYEIGPEKIIDTYAEATKHVD 649 Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 Q SL L+ + + + ++ AW G+KT YY+R Sbjct: 650 QGLSLTLFFPDTATTRDINKAQIHAWKKGIKTLYYIR 686 >gi|288933943|ref|YP_003438002.1| ribonucleoside-diphosphate reductase, subunit alpha [Klebsiella variicola At-22] gi|288888672|gb|ADC56990.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella variicola At-22] Length = 713 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 183/740 (24%), Positives = 305/740 (41%), Gaps = 83/740 (11%) Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + ++ I ++ + A L E K Q + P + Sbjct: 1 MATTTAERITAAADFHALNAMLNLYD--SEGRIPFEKDRQAVEVFMTAQIQPNTLSFVSQ 58 Query: 262 EGVKARLLHESMMD------FDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH--IN 310 E L+ E D +D ++ + R AF +LG Y Y L Sbjct: 59 EDKLTWLVREGYYDPQVLAGYDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALKTFDG 118 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 +E + VA+ LA + ++ ++ +E + S F +TPT N+G + +L Sbjct: 119 KHYLEDFADRCVMVALTLAQGDDQQARQLME---EMLSGRFQPATPTFLNAGKQQRGELI 175 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GV+P +K Sbjct: 176 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMK 235 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA +L H D+ FLD R+ D++ R ++ IPD+ Sbjct: 236 MLEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDIT 295 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRK 548 + ++A LFSP D+ LYGK F A + Q E R I A L+++ Sbjct: 296 FQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQR 352 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + E Sbjct: 353 LAEIQFESGYPYIMFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGE 410 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI TAVR L V D+ + ++ N A Sbjct: 411 DISCNLGSLNIAHT-----MDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHA 465 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPE ++ + +++HA+ S+ LA+ER ++ F+ S Sbjct: 466 IGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQS 525 Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + + + + E + R W +L+ + G+ N A+ Sbjct: 526 RYASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDIMRYGIYNRYLQAV 585 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N+ Sbjct: 586 PPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNND---------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 ++ A+EI P +I++ + + +DQ SL L+ + + + Sbjct: 630 ---------------NLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 674 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 675 INKAQIYAWKKGIKTLYYIR 694 >gi|261225972|ref|ZP_05940253.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261256770|ref|ZP_05949303.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Escherichia coli O157:H7 str. FRIK966] Length = 713 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 173/707 (24%), Positives = 291/707 (41%), Gaps = 63/707 (8%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLV 279 R +K R+ + + + + EG + ++ Sbjct: 29 AGRIQFDK-DRQAVDAFMATHVRPNSVTFSSQ-QQRLNWLVNEGYYDESVLNRYSRDFVI 86 Query: 280 YLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L +LG Y Y L +G R + F RV M E Sbjct: 87 TLFAHAHTSGFRFQTFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETL 144 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A++ + + S +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 145 ALQLTDEMLSVA-TPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 203 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 204 GGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHP 263 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ +NA LFSP D+ +YGK Sbjct: 264 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKP 320 Query: 518 FEI-AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F A + + E + ++A ++++ + FE+G+P+I ++D N +P Sbjct: 321 FADVAISQHYDELVADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPV--A 378 Query: 577 GVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E + S NL + + D A T+ TAV Sbjct: 379 GRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAV 438 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ + ++ + N AIGLG M L I Y SPEA++ + Sbjct: 439 RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFY 498 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMNR--- 740 I++HA+ S+ LA+ER ++ FK S + G + + + + EL Sbjct: 499 AITWHALRTSMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTGKVGELFARSGIT 558 Query: 741 -TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 +R W +L+ V G+ N N A+ PT +I+ I + SI P + ++ +G Sbjct: 559 LPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGR 618 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N + ++ A+EI +I+ Sbjct: 619 VYYPAPFMTN-------------------------------ENLALYQDAYEIGAEKIID 647 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 648 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 694 >gi|123441278|ref|YP_001005265.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088239|emb|CAL11028.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 693 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 170/708 (24%), Positives = 288/708 (40%), Gaps = 66/708 (9%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R +K R+ + + T E +EEG + + E + Sbjct: 9 GRIQFDKDRQAARQYFLQHVNQNTVFFHNL--QEKLNYLVEEGYYEKDVLEKYDFSFIKS 66 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338 L ++ +LG Y Y L +G R E + VA+ LA ++ Sbjct: 67 LFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG---NQQV 123 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 124 ARDLVEEIITGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRAINSALQLSKRG 183 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA YL H Sbjct: 184 GGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLHAHHP 243 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYG 515 D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ L Sbjct: 244 DILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEDMYLFSPYDVEQVYGVPLSE 303 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 Y + K I A ++ + + FE+G+P++ F+D N +P Sbjct: 304 ISVSEKYREMVDNKRIRKSK----IKAREFFQILAEIQFESGYPYMMFEDTVNRANPI-- 357 Query: 576 VGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 G ++ SNLC+EI +S E + S NL + + D +I TA Sbjct: 358 KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAHIMDSPDFGKSIETA 417 Query: 629 VRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +R L V D+ N ++ +K N AIGLG M L I Y S EA++ + Sbjct: 418 IRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTNIYF 477 Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAM 738 +++HAI AS +LA ER + F S + G + I + + + + Sbjct: 478 YTVAYHAIRASNQLAIERGSHFKGFDQSTYASGHYFTKYIEQSWQPKTAKVSALFAQAGI 537 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-G 797 + + W L++ V G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 538 SVPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEGKIG 597 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 ++ N+ + + A++I P +I Sbjct: 598 RVYYPAPYMTND-------------------------------NLEYYQDAYQIGPEKII 626 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 627 DTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674 >gi|301633424|gb|ADK86978.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma pneumoniae FH] Length = 721 Score = 306 bits (784), Expect = 1e-80, Method: Composition-based stats. Identities = 171/742 (23%), Positives = 306/742 (41%), Gaps = 83/742 (11%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 ++ DLE+ + ++ Y KV F ++ E + KP+ H + Sbjct: 12 TQEDLESYISLNA---------YTKVYGDFKMDLHAVEAYIQEHVKPKTKVFHSTKER-- 60 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 ++ + + R ++G Y+ Y L +G Sbjct: 61 --LDFLVKNDYYDENIINMYSFEQFEEITRKAYAYRFRYANFMGAFKFYNAYALKTFDGK 118 Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370 +E + RV M + +A++ + + F +TPT N+ + + S Sbjct: 119 WYLENYED---RVVMNVLFLANGNYNKALKLLKQIITNRFQPATPTFLNAGRKKRGEFVS 175 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 C+L + D++ I A+ L+K GG+ T +R GA I +S +IP +K+ Sbjct: 176 CYLLRIEDNMESIGRAITTTLQLSKRDGGVALLLTNIRESGAPIKKIENQSSDIIPIMKL 235 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G+R+GA YL H DV +FLD ++ D++ R ++ IPD+ Sbjct: 236 LEDSFSYANQLGQRQGAGAVYLHAHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITF 295 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP +V + + + + YE A++ K F I+A ++ + Sbjct: 296 TLAKNNEEMALFSPYDVYEEYGKPLSDISVTEMYYELLANQRIKKTF--INARKFFQTVA 353 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV----------- 599 + FE+G+P+I F D N R H + SNLC+EI S+ E Sbjct: 354 ELHFESGYPYILFDDTVNRR--NAHPNRIVMSNLCSEIVQPSTPSEFHHDLAFKKVGNDI 411 Query: 600 -CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIG 657 CNLGS+N+ + + + ++ A+ LD V ++ +K N + A+G Sbjct: 412 SCNLGSLNIAKAMESGP----EFSELVKLAIESLDLVSRVSNLETAPSIQKGNSENHALG 467 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L I Y SPEA++ + +++HA AS ELA E+G + +F+ + + Sbjct: 468 LGAMNLHGFLATNQIYYNSPEAIDFTNIFFYTVAYHAFKASSELALEKGKFKNFENTKFA 527 Query: 718 QGVFPIDSIGLLAEV-----------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G + I + + + + +R W EL ++ G+ NS+ +AI Sbjct: 528 DGSYFDKYIKVEPDFWTPKTERVKALFQKYQVEIPTRENWKELALNIQKNGLANSHLLAI 587 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + V+ V ++ Sbjct: 588 APTGSISYLSSCTPSLQPVVSPVEVRKEGRLGRIYVPAY--------------------- 626 Query: 827 HDGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 ++ D + A+E+ P +I A+ Q+ +DQA SL L++ + + + Sbjct: 627 ---------QLNKDSYPFYKDGAYELGPEPIINIAAAAQQHVDQAISLTLFMTDKATTRD 677 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 L+ Y A+ G + YY+R R Sbjct: 678 LNKAYIYAFKKGCSSIYYVRVR 699 >gi|324014405|gb|EGB83624.1| ribonucleoside-diphosphate reductase, alpha subunit [Escherichia coli MS 60-1] Length = 626 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 169/633 (26%), Positives = 273/633 (43%), Gaps = 60/633 (9%) Query: 294 EYLGLQILYDRYFLH-INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 +LG Y Y L +G R + F RV M E A + + + S F Sbjct: 13 TFLGAWKFYTSYTLKTFDGKRY--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQ 70 Query: 353 CSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLG 411 +TPT N G + +L SCFL + D++ I A+ L+K GG+ + +R G Sbjct: 71 PATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG 130 Query: 412 AHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 A I +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ D Sbjct: 131 APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENAD 190 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQAD 530 ++ R ++ IPD+ +NA LFSP D+ +YGK F A + Sbjct: 191 EKIRIKTLSLGVVIPDITFHLAKENAQMALFSP---YDVERVYGKPFADVAISERYDELV 247 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 E + ++A ++++ + FE+G+P+I ++D N +P G ++ SNLC+EI Sbjct: 248 ADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQ 305 Query: 591 NSSSEETAVC-------NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHT 642 +S+ E + S NL + + D A T+ TAVR L V D+ + H+ Sbjct: 306 VNSASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHS 365 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + N AIGLG M L I Y SPEA++ + I++HA+ S+ LA Sbjct: 366 VPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLA 425 Query: 703 QER-GAYSSFKGSLWDQGVFPIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRV 753 +ER ++ FK S + G + EL +R W +L+ V Sbjct: 426 RERGETFAGFKQSRYASGEYFSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDV 485 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812 G+ N N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 486 MRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN---- 541 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + ++ A+EI +I++ + + +DQ S Sbjct: 542 ---------------------------ENLALYQDAYEIGAEKIIDTYAEATRHVDQGLS 574 Query: 873 LNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 L L+ + + + ++ AW G+KT YY+R Sbjct: 575 LTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR 607 >gi|313140806|ref|ZP_07802999.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171] gi|313133316|gb|EFR50933.1| ribonucleotide reductase [Bifidobacterium bifidum NCIMB 41171] Length = 731 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 169/706 (23%), Positives = 276/706 (39%), Gaps = 75/706 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + Y AT+ + E I+ A + E L + Sbjct: 50 KAAEREYVTGHVATNTKRFESTGERLRYLIDHQYYAPAVFERYSPEFLDGFYAHAESSGF 109 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 +LG Y Y L ++ + + F R A E+RAVE+ + + S Sbjct: 110 EFGTFLGAFKFYTSYALKTFDGKLYL-EDFPQRCAAVALELAAGNEQRAVEYLDEMLSGA 168 Query: 351 FMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F +TPT N G + SCFL + D + I + L+K GG+ + +R Sbjct: 169 FQPATPTFLNLGKAQRGEAVSCFLVRIEDSMESISRGINAALQLSKRGGGVALLLSNLRE 228 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 LGA I +S GVIP +K+ D+ NQ G R+GA YL H D+ FLD ++ Sbjct: 229 LGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILRFLDTKREN 288 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R + IPD+ + + A LFSP D +YGK F Sbjct: 289 ADEKIRIKSLALGVVIPDVTFELAKKKAKMALFSP---YDAERVYGKPFADISVTEHYDE 345 Query: 530 DRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + ++ + I A + + + FE+G+P+I F+D N +P G + SNLC+EI Sbjct: 346 MVADDRIRKTYIDAREFFTTLAEIQFESGYPYIVFEDTVNRANPI--AGRITMSNLCSEI 403 Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 S CNLGS+N+ LA T+ TA+R L +V Sbjct: 404 LQVQEASSYNEDLTYSHVGRDVSCNLGSLNIAKAMD------AGLAGTVETAIRALTSVS 457 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + +++N AIGLG M L I Y S EA++ D +++HA Sbjct: 458 EHTRIDAVPSIRRANDEGHAIGLGQMNLHGFLAREGIQYGSEEALDFTDMYFMTVAYHAY 517 Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR--------------DELAMNR 740 AS LA E G + F S + + + + R + + Sbjct: 518 RASHTLAVEHGTAFRGFADSAYAKPAGEGNYFDKYTDGRRSLAPRTELVRALFERFGVAI 577 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDF 799 + W EL+ + G+ N N A+ PT +I+ I + SI P + ++ G Sbjct: 578 PTEADWAELRDDILRDGIYNQNLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKLGRV 637 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 +++ N + + + A+EI ++++ Sbjct: 638 YYPAAYMTN-------------------------------ENLEYYKDAYEIGWKAIVDT 666 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + +DQ SL L+ + + + L+ AW G+KT YY+R Sbjct: 667 YAEATQHVDQGLSLTLFFPDTATTRDLNKAQIYAWRKGIKTLYYIR 712 >gi|332285600|ref|YP_004417511.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7] gi|330429553|gb|AEC20887.1| ribonucleotide reductase large subunit [Pusillimonas sp. T7-7] Length = 949 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 147/641 (22%), Positives = 263/641 (41%), Gaps = 76/641 (11%) Query: 322 MRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPD 378 RVA LA E +++ A EF F+ + +GT L +CF+ V D Sbjct: 39 ARVAEALARVEPAKLRKQYAQEFL-WAMENGFIPAGRVNSAAGTDLQSTLINCFVQPVGD 97 Query: 379 DLY-------GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + GI+ AL + A + GG+G +++ +R GA + GT + G I +++V Sbjct: 98 SITEEVDGKPGIYTALAQAAETMRRGGGVGYNFSGIRPRGARVKGTGSSASGPISYMRVF 157 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + + V G R+GA A L H D+ EF+ ++ +R + ++ N + + D FM+ Sbjct: 158 DRSCETVESAGSRRGAQMAVLNVTHPDIMEFITAKQ----ERGQLNNFNVSVGVSDAFMQ 213 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 V + E +L G + V++ + A +W ++ Sbjct: 214 AVETDG--LFELSHEAEPTEELKGSG---------AYLRDDGLWVYKAVQAREIWDLIMQ 262 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 + P + + D N + + + S+N C E L + C LGS+NL A+ Sbjct: 263 STYAAAEPGVLYMDRINQENNLAYCEKIESTNPCGEQPLP----DYGCCCLGSLNLTAYV 318 Query: 612 ANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + FD++K+ + AVR+LDNV+ +++ + R +GLG G Sbjct: 319 TSPFSATAAFDFEKMKQATKLAVRMLDNVLIATKWPLDEQRLEAENKRRLGLGFTGLGDT 378 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L +L + Y S + ++A + + A ASV LAQERGA+ + Sbjct: 379 LIMLGLRYDSEQGRQLAADFARHMRDAAYEASVALAQERGAFPLLQA------------- 425 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDP 784 DE + ++ DELK+ ++ G+RNS+ +IAPT TI+ S I+P Sbjct: 426 -------DEYLNSEFAQRLPDELKQAIRQHGIRNSHLTSIAPTGTISLAFADNASNGIEP 478 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 ++ Y ++ + + ++D E + G G+I +PD Sbjct: 479 AFSWFYKRTKR-----------MADGSKKDYTVEDHAYRVYRAMG--GDIGALPDA---- 521 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 +A EI + + + ++D A S + + + +Y QAW GLK Sbjct: 522 FVSALEISAIDHMLMVASVAPYVDAAISKTVNVPADYPYDDFKDLYMQAWHKGLKGITTY 581 Query: 904 RSRSATSVEKST-LKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 R + S + DG + +++ + + S Sbjct: 582 RPNNILGAVLSVPGESQDGAPQPITLSEQDKRLVLTEVAKS 622 >gi|238063474|ref|ZP_04608183.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp. ATCC 39149] gi|237885285|gb|EEP74113.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp. ATCC 39149] Length = 972 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 124/637 (19%), Positives = 230/637 (36%), Gaps = 28/637 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E A E +L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 111 GYFATPADAEVFAHELTWMLLHQVFSFNSPVWFNVGTPSPQQVSACFILSVDDSMDSILD 170 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 171 WYKEEGLIFKGGSGSGVNLSRIRSSRELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF+ + D R D + + V Sbjct: 230 RAAKMVILDVDHPDIEEFVITKAREEDKIRALRDAGFDMDLGGNDIVSVQYQNANNSVRV 289 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + G F++ R + + I A L+R + +E P + + Sbjct: 290 SDEFMSAVENGGGFDLR--------GRLDGQTIETIEAKKLFRTIAQAAWECADPGLQYD 341 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 D N G + +SN C+E + + CNL S+NL+ + F+ +K Sbjct: 342 DIINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMKFLRADGGFEVEKFVR 397 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I EK ++ +R +G+G + L +PY S + +A Sbjct: 398 SVEFVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYDSEQGRSVA 457 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAM----N 739 ++ A S ELA GAY + + ++ + Sbjct: 458 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDAIKPAGTVATAIQ 517 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 R + W + K G RNS +APT TI + + ++P + + K G Sbjct: 518 REATKQWTQGNKIGDRYGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 577 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L+ +E + + + G + + + + + A I Sbjct: 578 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIADHGHVVDAPGLKPEHYPVFDCAMGERSIA 637 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q +I A S + + E + + ++ IY + W +GLK R Sbjct: 638 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWKLGLKALAIYRDNCKVGQ 697 Query: 912 EKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 S K + A ++ + Sbjct: 698 PLSVAKPNKAVVEAAVEAAVEAAAVEKVVEKVIEYRP 734 >gi|290510979|ref|ZP_06550348.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. 1_1_55] gi|289775972|gb|EFD83971.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella sp. 1_1_55] Length = 713 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 184/740 (24%), Positives = 305/740 (41%), Gaps = 83/740 (11%) Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 + ++ I ++ + A L E K Q + P + Sbjct: 1 MATTTAERITAAADFHALNAMLNLYD--SEGRIPFEKDRQAVEVFMTAQIQPNTLSFVSQ 58 Query: 262 EGVKARLLHESMMD------FDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH--IN 310 E L+ E D +D ++ + R AF +LG Y Y L Sbjct: 59 EDKLTWLVREGYYDPQVLAGYDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALKTFDG 118 Query: 311 GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 +E + VA+ LA + ++ ++ +E + S F +TPT N+G + +L Sbjct: 119 KHYLEDFADRCVMVALTLAQGDDQQARQLME---EMLSGRFQPATPTFLNAGKQQRGELI 175 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GV+P +K Sbjct: 176 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMK 235 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA +L H D+ FLD R+ D++ R ++ IPD+ Sbjct: 236 MLEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDIT 295 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRK 548 + ++A LFSP D+ LYGK F A + Q E R I A L+++ Sbjct: 296 FQLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQR 352 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + E Sbjct: 353 LAEIQFESGYPYIMFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGE 410 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI TAVR L V D+ + ++ N A Sbjct: 411 DISCNLGSLNIAHT-----MDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHA 465 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPE ++ + +++HA+ S+ LA+ER ++ F+ S Sbjct: 466 IGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQS 525 Query: 715 LWDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + + + + E + R W +L+ V G+ N A+ Sbjct: 526 RYASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAV 585 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N+ Sbjct: 586 PPTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNND---------------- 629 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 ++ A+EI P +I++ + + +DQ SL L+ + + + Sbjct: 630 ---------------NLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 674 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 675 INKAQIYAWKKGIKTLYYIR 694 >gi|29469209|gb|AAO65322.1| putative vitamin B12-dependent ribonucleotide reductase [Streptomyces murayamaensis] Length = 826 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 115/613 (18%), Positives = 219/613 (35%), Gaps = 36/613 (5%) Query: 351 FMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 F ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 1 FSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRS 60 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKN 468 + G + G + F++ A+ +A + G R+ A L+ H D+E F++ + Sbjct: 61 SKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVK 119 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 + R D + + ++ EF A E + Sbjct: 120 EEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVRVNDEFMKAVETGGKF 169 Query: 529 ADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 R + V ++ A +L+RKM + P I + D N G ++ SN C+ Sbjct: 170 GLRARMTGDVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWHTCPESGRINGSNPCS 229 Query: 587 EITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCH 641 E + CNL S+NL+ + F+ ++ A + + +D I Sbjct: 230 EYMH----LDNTSCNLASLNLMKFLKDDGEGHQAFEVERFAKVVELVITAMDISICFADF 285 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +K ++ R +G+G + L Y S +A ++ + S EL Sbjct: 286 PTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAEL 345 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIG 757 A G Y + + + ++ + W ++ + + G Sbjct: 346 AAVVGPYDGYARNAAPHQRVMKQHADENTKAVRMDDLDSPIWAAATEAWQDVVRLGEKNG 405 Query: 758 MRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDL 815 RN+ IAPT TI + ++P + + K G +VN + L++ Sbjct: 406 FRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGY 465 Query: 816 WDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQA 870 E + + + G++ + + + ++ A I M + + Q WI A Sbjct: 466 QPEQIEAIVAHIAEHGNVIDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGA 525 Query: 871 QSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 S + L E + + ++ +Y +AW MG+K R S K Sbjct: 526 LSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLSAKTKEKEKAEVTEKA 585 Query: 930 DPNSSTHSLGIPS 942 + + Sbjct: 586 EAEIRKAVEKVVE 598 >gi|206576590|ref|YP_002236985.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] gi|206565648|gb|ACI07424.1| ribonucleoside-diphosphate reductase, alpha subunit [Klebsiella pneumoniae 342] Length = 713 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 172/679 (25%), Positives = 286/679 (42%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--ING 311 + + EG + ++ L + +LG Y Y L Sbjct: 60 DKLTWLVREGYYDPQVLAGYDRAFVLALFAHARRAAFRFQTFLGAWKFYTSYALKTFDGK 119 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 +E + VA+ LA + ++ ++ +E + S F +TPT N+G + +L S Sbjct: 120 HYLEDFADRCVMVALTLAQGDDQQARQLME---EMLSGRFQPATPTFLNAGKQQRGELIS 176 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S GV+P +K+ Sbjct: 177 CFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKM 236 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA +L H D+ FLD R+ D++ R ++ IPD+ Sbjct: 237 LEDAFSYANQLGARQGAGAVWLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITF 296 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKM 549 + ++A LFSP D+ LYGK F A + Q E R I A L++++ Sbjct: 297 QLAKEDAQMALFSP---YDVERLYGKPFADCAIGDLYPQLVADERVRKRWIRARDLFQRL 353 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I F+D N +P G + SNLC+EI + E Sbjct: 354 AEIQFESGYPYIMFEDTVNRANPV--AGRITMSNLCSEILQVSTPSTYDENLSYAHIGED 411 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D A TI TAVR L V D+ + ++ N AI Sbjct: 412 ISCNLGSLNIAHT-----MDSPDFARTIATAVRALTAVSDMSDIQSVPSVAAGNAASHAI 466 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L I Y SPE ++ + +++HA+ S+ LA+ER ++ F+ S Sbjct: 467 GLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMLLARERGQRFAGFEQSR 526 Query: 716 WDQGVFPIDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + + + + E + R W +L+ V G+ N A+ Sbjct: 527 YASGAYFDKYLQEEWQPKTERVRALFARAGIPLPDRESWRQLRDDVMRYGIYNRYLQAVP 586 Query: 768 PTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ +G F+ N+ Sbjct: 587 PTGSISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMNND----------------- 629 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 ++ A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 630 --------------NLALYQDAYEIGPQKIIDTYAEATRHVDQGLSLTLFFPDTATTRDI 675 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 676 NKAQIYAWKKGIKTLYYIR 694 >gi|10957414|ref|NP_051640.1| ribonucleoside-diphosphate reductase, alpha chain [Deinococcus radiodurans R1] gi|6460843|gb|AAF12547.1|AE001826_16 ribonucleoside-diphosphate reductase, alpha chain [Deinococcus radiodurans R1] Length = 702 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 170/716 (23%), Positives = 292/716 (40%), Gaps = 64/716 (8%) Query: 213 EPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES 272 E N + + + + L +++ L E E G+ L E Sbjct: 13 ELNNKVLAGNVVDTQHDTDALQAYFQEKVNPNTVFFHDL-REKIRYLTEHGLWDARLFER 71 Query: 273 MMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLAL 330 D+ + + ++G Y Y +E + A+ + Sbjct: 72 YSSEDVRQVFEKAYGYKFRFKAFMGAYKFYSEYAGMTPDRSRWLERYEDRLSITALARS- 130 Query: 331 KETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQ 388 E+ A+E + L + F +TPTL NSG + +L SCFL D+L I L Sbjct: 131 ---ERVDEALELVHHLVNQTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLDSITKTLS 187 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 A L+K GG+G + + +R G + G ++GV+ K+ ++ +Q G+R GA Sbjct: 188 FVAELSKGGGGIGVEASNLRARGESLRGIQNVTKGVLGVAKMLDNMLRYADQAGQRPGAG 247 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV- 507 YL H D + L+ +K D+ R ++ IPD+FM++V F P Sbjct: 248 AVYLSVMHADFSDLLNAKKIATDEDARLKTLSIGATIPDIFMEKVRCGEDIYQFYPHSFF 307 Query: 508 -SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDP 566 + ++ Y + AD I+ +++SA L + E+G+P++ F+ Sbjct: 308 QETGREFTSIDWTKEY---QALADNPNIRK-KRVSARRLLEDIAVTQGESGYPYLLFEGN 363 Query: 567 CNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL---------GSINLLAHFANNQFD 617 N +P +VG + SNLC+EI ++ S NL + Sbjct: 364 ANRANPIPNVGTIKMSNLCSEILQPTTPSYFHPYGQEHRDRIGLDVSCNLASLVIEQTMH 423 Query: 618 YDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 L + A+R+LDNV + H + K++N R+IGLG MG S L + Y S Sbjct: 424 GGDLGRVVGAAIRMLDNVARSTSVHEVPAVKRANDEMRSIGLGAMGLHSFLAGKELIYGS 483 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 PEA+E D + +HA AS+E+A++ G +S F+GS + G + R Sbjct: 484 PEALEFVDVFFAAVHYHARKASMEIARDTGFVFSGFEGSRYQSGEHFAQYLERDFAPRRP 543 Query: 736 LA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +R W++L + +KT G+ +S MAIAPT +I+ + S SI P + + Sbjct: 544 EVAALFEGHTLPTRADWEQLVEDIKTHGLAHSFVMAIAPTGSISYVSHASASIMPITEKV 603 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 +++ L +D + + A+ Sbjct: 604 ETRTSNKARTIYPMPHL-------------------------------SEDTEWYYEEAY 632 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++D ++++ + QK +DQ S L+L + + L Y A+ +G+KT YY R Sbjct: 633 DMDQRRVLDTVAAAQKHVDQGISCTLFLPASATTRTLQSYYLYAYRLGIKTLYYTR 688 >gi|331701738|ref|YP_004398697.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus buchneri NRRL B-30929] gi|329129081|gb|AEB73634.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus buchneri NRRL B-30929] Length = 721 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 164/715 (22%), Positives = 297/715 (41%), Gaps = 82/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L K+ + + L + F I+ + L L ++ Sbjct: 32 KEALEAFLKENVQPNLMKFDSL-SDRFDYLIKNNYYEADFIHKYQLSFVEKLYQYLN-DQ 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y +Y L N + + + ++F RVA E+ A++ + + Sbjct: 90 DFHFKSFMAAYKFYAQYALKTNDNDLYL-ESFLDRVAANALFFADGDEQLAMDLADEIVH 148 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G + + SCFL DD+ I + L++ GG+G + + + Sbjct: 149 QRYQPATPSFLNAGRENRGEFVSCFLIQTTDDMNTIGRTINSALQLSRIGGGVGINLSNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K Sbjct: 209 REAGAPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD F + + +A LFSP +V + + +I E Sbjct: 269 ENADEKIRLKTLSLGVTVPDKFYQLIKADADMYLFSPYDVEREYGVPFSYVDITKEYDNL 328 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 A+ K +KI A L ++ + E+G+P+I D N G + SNLC+E Sbjct: 329 VANDKISK--KKIKARDLETEISKLQQESGYPYIINIDTANR--SNPIAGRIVMSNLCSE 384 Query: 588 ------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 + CNLGS N+ A D ++ + VR L V Sbjct: 385 ILQVQTPSTVDNQQHYIKMGKDISCNLGSTNINNMIAG-----DDFGHSVESMVRALTFV 439 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D N + +K N +IGLG MG S L H+ Y SPE++E +++ + Sbjct: 440 TDHSNIDVVPSIQKGNKESHSIGLGGMGLHSFLAKHHMYYGSPESIEFTSVYFMLLNYWS 499 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG-----LLAEVRDELAMNRT-SRLPWD 747 + AS ++A+ER + +F+ S + G + + AEV+ + ++ W+ Sbjct: 500 LVASNKIAKERKETFVNFENSKYADGSYFDKYLDGSFAPKSAEVKALFKDDWIPTKEDWE 559 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806 LK+ V G+ + N +A+AP +I+ I + S+ P + + + G +L Sbjct: 560 NLKESVMKDGLYHQNRLAVAPNGSISYINDTTASLHPIINRIEERQESKIGKIYYPAPYL 619 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 N+ + +A+++D +I+ + Q+ Sbjct: 620 SND-------------------------------TMPYYTSAYDMDMRKVIDIYAAAQQH 648 Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 IDQ +L L++ + + L+ + A+ G+K+ YY+R+ Sbjct: 649 IDQGMALTLFMRSTIPEGLYEWKNGRTDKMTTRDLNILRNYAYKKGVKSIYYIRT 703 >gi|157363198|ref|YP_001469965.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga lettingae TMO] gi|157313802|gb|ABV32901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Thermotoga lettingae TMO] Length = 839 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 174/696 (25%), Positives = 293/696 (42%), Gaps = 108/696 (15%) Query: 285 LKYERDFAFEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR---- 338 ++ + ++IL +RYF+ G IE RVA +A E Sbjct: 6 IEKYKKIQPSQNAVRILTERYFIKTPAGEFIEKSWHDVAHRVARVVASAELINNPALENL 65 Query: 339 ------------AVEFYNLLSSFHFMCSTPTLFNSGT----------------------- 363 EF++LL+S F+ ++PTLFNSG Sbjct: 66 SKSEKLDYIKLLEKEFFDLLASRIFIPNSPTLFNSGMGVDYELLYKPLEQMELDDYSKII 125 Query: 364 ----RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG 419 LS+CF+ V D + GIF A++E A++ K GG+G++++ +R G+ + GT+G Sbjct: 126 QMRNHLHMLSACFVVPVEDSIDGIFTAVKEYALITKAGGGIGSNFSSLRPNGSFVAGTHG 185 Query: 420 KSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD-RRRTHD 478 K+ G I F+ V N V QG +R+GA+ L H D+ +F+ +K + R + Sbjct: 186 KASGPISFMHVFNSAVSVVEQGYRRRGALMGILNIDHPDIMDFISAKKGNDGEKVLRFFN 245 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA----DRGEI 534 ++ + M+R E YER + + Sbjct: 246 ISVG-----IPMRR--------------------------EELLRIYERDGTIRLNHSKW 274 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 ++I + +KM +ETG P + F N + S+N C EI L + Sbjct: 275 HGEKEIKVREIIQKMAQSAWETGDPGMVFLGEMNRYYALYPHKEIISTNPCGEIGLGAY- 333 Query: 595 EETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 CNLGSI+L + N D+D L R AVR LDNVID+N I+K K+ R Sbjct: 334 ---EACNLGSIDLAKLYTQNGVDWDALEKATRIAVRFLDNVIDVNVFPIDKISKAVKESR 390 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG+MGF L+ + IPY S EA +A M F++ H+ S +L +E+G + F+ S Sbjct: 391 RLGLGIMGFADLLYKMDIPYDSEEARRLAKNIMAFMALHSHEESSKLGEEKGNFPLFEQS 450 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW-DELKKRVKTIGMRNSNCMAIAPTATIA 773 + + +M+ + E + V RN +AIAPT +I+ Sbjct: 451 RYH-----------TEDDFVPFSMDESDYDEEIFEHFRNVAPKFKRNVAVLAIAPTGSIS 499 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGD------FTVVNSFLVNELKQRDLWDEAMISDLKYH 827 NI S ++P++ YV+ + VN L +L + + I D Sbjct: 500 NIADTSSGLEPNFLLAYVRYVNKQNSDEREPLFYVNEVLKQKLPEDLINS---IKDKLVE 556 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 DG++ ++ I +++K++ + +I P+ + Q ++D S + L + + Sbjct: 557 DGTLKHL-EIDEEIKRVFVVSHDIKPIDHLLMQEAFQCYVDNNISKTINLPNSATVDDVV 615 Query: 887 FIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 +Y +A ++ R S + ++ K + K Sbjct: 616 EVYIEALKHKIRGLTIYRDGSLQTQVLTSTKSLKTK 651 >gi|3183696|emb|CAA07028.1| ribonucleotide reductase large subunit [Felid herpesvirus 1] Length = 785 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 167/715 (23%), Positives = 290/715 (40%), Gaps = 87/715 (12%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQIL----------------- 301 +I VK L + + +L L + RD + G++ + Sbjct: 79 HIRIRVKTTTLDKWLNSMELALLPQVI---RDISINMPGVKRVLEQFEIHDYEPLCELGL 135 Query: 302 ------YDRYFLHINGSRIEMPQAFFMRVA----------MGLALKETEKEKR--AVEFY 343 + Y ++ +E FF+R+A M AL F+ Sbjct: 136 QSALKYEEMYLANLENGALESMGQFFLRLAATAATASTPEMRQALNAKLPTWFRVFKSFF 195 Query: 344 NLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLG 401 LS + +TP + G L+SC+L + + D I +++ A + GG+G Sbjct: 196 FYLSRQLMIPATPIMLFGGRTKGSLASCYLLSPIMTDTETAINALIRDVAPILLRRGGIG 255 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + ++GV+P LK+ + +A++ + G VC Y+E WH D+ Sbjct: 256 ICLQNFNKKLSK-----ECTKGVLPLLKLLDSMTIAISDSERPTG-VCIYVEPWHADIRS 309 Query: 462 FLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQN------AGWTLFSPDEVSDLHDLY 514 L++R D+ R ++ + W PDLF R ++ WTLF E L LY Sbjct: 310 ILNMRGMLASDEDSRCDNIFSCLWTPDLFFDRYQRHLGGEVNVIWTLFDDAESH-LSKLY 368 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 GKEF YE E + + + ++ TG P++ FKD CN Sbjct: 369 GKEFNEEYERLEAAGMGVD-----SLPIQEMAYLIVRSAIMTGSPFLMFKDACNRHYHFD 423 Query: 575 HVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD------YDKLASTIRT 627 G + +SNLCTEI ++ VCNL SI+L D L T Sbjct: 424 TRGDALTTSNLCTEIIQKATDTRRGVCNLISIDLPRCLRRIAHDQSLYFSIPLLIRAAYT 483 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A ++ ++ E + +R++GLG+ G + L + S EA + + + Sbjct: 484 ATIFVNPMMRAGNFPTEATMRGVEENRSLGLGIQGLHTTFLALEMDMVSYEARRLNPQIL 543 Query: 688 EFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E + +I AS L + + +F+ S++ +G+ P D+ W Sbjct: 544 ESLLLGSIHASTSLCKLGMTPFKNFRESIYGRGLLPFDAYPNTP---------LIHFKKW 594 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +L+ + G+ NS +A+ PT + + + S+ P + NL+ K +G+ N L Sbjct: 595 QQLRVVMMKYGLYNSQFVALMPTVSSSQVTESSEGFSPIFTNLFSKVTSTGEILRPNLQL 654 Query: 807 VNELKQ---RDLWDEAMISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESAS 861 + +++ R+ A+IS L+ SI + TAFE D LI+ + Sbjct: 655 MRTIRRLFPRECARLAVISTLEAAQWSIRGAFGDLGDYHPLAKFKTAFEYDQRQLIDMCA 714 Query: 862 RRQKWIDQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++DQ+QS++L++ EP ++ + A+ GLKT YY + + AT+ Sbjct: 715 DRAPFVDQSQSMSLFISEPADGKLPASRIMNLLVHAYKCGLKTGMYYCKLKKATN 769 >gi|209516306|ref|ZP_03265163.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. H160] gi|209503242|gb|EEA03241.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia sp. H160] Length = 861 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 146/632 (23%), Positives = 256/632 (40%), Gaps = 80/632 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 L +L ++Y + F RVA G+A E + + +VE F + L Sbjct: 32 QFSLDVLLEKYAKGDE----QSADDVFRRVARGVAEAEPPELRASVEALFVDNLRHGALG 87 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 88 AGRIMSAAGSGIAATLINCFVQPVGDSIQGVDDQGLPGIYVALLQAAETMRRGGGVGYNF 147 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA +H TN + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 148 SAIRPKGARVHTTNSAASGPCSYMDVFDASCRTVESAGSRRGAQMAVLDCNHPDLLEFIE 207 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM+ V + W L E S G Sbjct: 208 AKHSKG----RWNNFNVSVGVTDEFMRAVENDEPWQLVHRAEPSPALRSAGDV------- 256 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W +++ ++ P I F N + + V + ++N Sbjct: 257 ---RQREDGLWVYSEHEARAIWDRIMRSTYDVAEPGIVFISRMNEDNNLRAVETIRATNP 313 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHF---------ANNQFDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL FD+D LA RT VR LD+V Sbjct: 314 CGEQPLPAY----GCCNLGPLNLTRFVVDPFAQLQGRQPSFDWDGLAWRTRTQVRFLDDV 369 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S E + A + A Sbjct: 370 LDVTLWPLPQQYDESRAKRRIGVGFTGLGDTLVMLGLRYNSQEGRDFAVRIARLMRDEAY 429 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASV+LA+ERGA+ F + + L + D++++ ++ Sbjct: 430 RASVDLAKERGAFELFDAARY-------------------LETGTFASRLPDDIQQAIRR 470 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ ++ + + Sbjct: 471 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYTRTK-----------MMADGGRE 519 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 E L G G++ R+PD A E+ ++ + Q ++D + S Sbjct: 520 SFDVEDYAYRLYRELG--GDVTRLPD----YFVNALEMSARDHLDMMAAVQPYVDTSISK 573 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + +Y AW GLK R Sbjct: 574 TVNVPADYPFDAFESLYFDAWKSGLKGLATYR 605 >gi|319408169|emb|CBI81822.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella schoenbuchensis R1] Length = 711 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 178/704 (25%), Positives = 298/704 (42%), Gaps = 78/704 (11%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ ++ +++ + +D ++ K+ F F +LG Sbjct: 43 LQHVNQNTVFFHDLKEKIDYLIEEGYYEKALFELYDFSFVKKLFKHAYAFKFRFPTFLGA 102 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + RV + + A + + + F +TP Sbjct: 103 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGNKTLAECLVDEIITGRFQPATP 159 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL V D++ I ++ L+K GG+ T +R GA I Sbjct: 160 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 219 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GV+P +K+ D NQ G R+GA YL H+D+ FLD ++ D++ R Sbjct: 220 QIENQSSGVLPVMKLLEDAFSYANQLGARQGAGAVYLHAHHLDIMTFLDTKRENADEKVR 279 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFSP D+ + GK F ++ K Sbjct: 280 IKTLSLGVVIPDITFELARNNEDMYLFSP---YDIERVVGKPFSDISLTEHYRSFVDNSK 336 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + +KISA ++ + + FE+G+P++ F+D N +P G ++ SNLC+EI + + Sbjct: 337 IRKKKISARVFFQTLAEIQFESGYPYLLFEDTANRTNPI--AGRINMSNLCSEILQVNEA 394 Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 E CNLGS+N+ ++ F + T+ TAVR L V D+ N Sbjct: 395 SELETDLTYRTIGNDISCNLGSMNIAKAMESSDFGW-----TVETAVRALTAVSDMSNIA 449 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + K N AIGLG M L I Y SPEA++ + +++H + AS + Sbjct: 450 CVPSIAKGNSESHAIGLGQMNLHGFLARERIYYGSPEAIDFTNIYFYTVAYHVLRASNLI 509 Query: 702 AQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752 A+ER + F+ S + G F I + + L R W ELKK Sbjct: 510 ARERQKVFVGFEKSAYADGSFFTKYIETEWKPQFPLVQELFERNNIVIPNQEDWKELKKL 569 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811 V G+ N N AI PT +I+ I + SI P + ++ G ++ N Sbjct: 570 VIEHGLYNRNLQAIPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 627 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 N++ + A+EI P +I++ + + +DQ Sbjct: 628 ---------------------NLDF--------YQDAYEIGPEKIIDTYAAATQHVDQGL 658 Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYY--LRSRSATSVE 912 SL L+ + + + ++ AW G+K+ YY LR ++ + E Sbjct: 659 SLTLFFPDTATTRDVNCAQIYAWKKGIKSVYYIRLRQKALSGTE 702 >gi|194290033|ref|YP_002005940.1| ribonucleotide reductase subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193223868|emb|CAQ69877.1| Putative ribonucleotide reductase alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 828 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 150/634 (23%), Positives = 257/634 (40%), Gaps = 80/634 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTP 356 ++L ++Y S ++ Q RVA LA E ++E + F F+ + Sbjct: 20 EVLLEKYAKGEERSIADVRQ----RVARALAQAEPEDQREAWSARFL-WAQENGFVPAGR 74 Query: 357 TLFNSGTRHP-QLSSCFLTTV-------PDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 +GT L +CF+ V D I+ A+ + A + GG+G D++ +R Sbjct: 75 INSAAGTGIQATLINCFVQPVGDSVSEPRDGRPSIYTAVAQAAETMRRGGGVGYDFSAIR 134 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + T+ ++ G + F+KV + + V G R+GA L H D+E F+ + Sbjct: 135 PAGALVRATHSRASGPVSFMKVFDASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-- 192 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D+ + N + + D FM+ V +A L E G AY + Q Sbjct: 193 ---DKGELSNFNISIGVTDDFMQAVQADAEVELVHEAEPGADMIAAG-----AYRRDDGQ 244 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 V+R++ A LW +++ ++ P I F N + + + ++N C E Sbjct: 245 ------WVYRRVPARNLWDQVMQATYDHAEPGILFLSQINADNNLYYCERIEATNPCAEQ 298 Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTI 643 L S C LGSINL FD+D A +R A R+LDNV+D+ + Sbjct: 299 PLPSY----GCCCLGSINLTRFVRQPFTPQAAFDFDAFAEVVRVATRMLDNVLDVTFWPL 354 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + + H R +GLG +G SAL +L + Y + A ++A E + A AS ELA Sbjct: 355 PEQQAEAHAKRRVGLGFLGLGSALVMLGLRYDTEPARQLAARISERMRDEAYLASTELAT 414 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 ++GA+ F + + F + +++ + G+RNS+ Sbjct: 415 QKGAFPLFDAEAYLRSGF--------------------ASRLPQTVREAIGRHGLRNSHL 454 Query: 764 MAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 ++IAPT TI A S I+P++ Y + + + R Sbjct: 455 LSIAPTGTITLAFADNASNGIEPAFSWTYNRRKR-----------MPDNSYRSFEVADHA 503 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 L H G ++ ++P+ TA ++ + + Q +ID + S + + + Sbjct: 504 WRLYRHMG--ADMAQLPEA----FVTALQMSALDHMRMLEAVQPYIDTSISKTVNVPEDY 557 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + +Y +AW GLK R S S Sbjct: 558 PYEAFRNLYLEAWKAGLKGLATYRPNSVLGAVLS 591 >gi|304390567|ref|ZP_07372520.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326323|gb|EFL93568.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 733 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 164/684 (23%), Positives = 274/684 (40%), Gaps = 70/684 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E +EEG + + L + +LG Y Y L +G Sbjct: 79 REKLDYLVEEGYYEEDTLKQYSFEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDG 138 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLS 369 R E + RV M E+ AV+ + + + +TPT N+G + ++ Sbjct: 139 KRYLERFED---RVCMVALYLARGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMV 195 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I + L+K GG+ T +R GA I +S GV+P +K Sbjct: 196 SCFLVRLEDNMESIARGINSALQLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMK 255 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G R+GA Y+ +H D+ FLD ++ D++ R ++ +PD+ Sbjct: 256 LLEDSFSYANQLGARQGAGAVYISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDIT 315 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWR 547 + LFSP D+ +YG F E Y D I+ +KI A ++ Sbjct: 316 FELARNKEPMYLFSP---YDVERVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQ 371 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEET 597 + + FE+G+P+I F+D N +P + V ++ E + + Sbjct: 372 TLAEIQFESGYPYIVFEDTVNRANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKD 431 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAI 656 CNLGS+N+ + A +I A+R L V D+ + ++ N AI Sbjct: 432 ISCNLGSMNIAKTLESP-----DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAI 486 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715 GLG M L I Y S E ++ + +F+A+ AS LA ERG + F+ S Sbjct: 487 GLGAMNLHGCLAKNQIFYGSDEGLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQ 546 Query: 716 WDQGVF-----PIDSIGLLAEVRDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + D A+VR+ + + W L +K G+ N N AI Sbjct: 547 YASGEYFEKYLQGDWTPRTAKVRELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIP 606 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 607 PTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPYMTND----------------- 649 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + A+EI +I++ + K +DQ SL L+ + + + + Sbjct: 650 --------------NLDYYQDAYEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDV 695 Query: 886 DFIYRQAWLMGLKTTYYLRSRSAT 909 + AW G+K+ YY+R R A Sbjct: 696 NKAQIYAWRKGIKSLYYIRLRQAA 719 >gi|71894416|ref|YP_278524.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma synoviae 53] gi|71851204|gb|AAZ43813.1| ribonucleoside-diphosphate reductase alpha chain [Mycoplasma synoviae 53] Length = 724 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 162/676 (23%), Positives = 288/676 (42%), Gaps = 71/676 (10%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEM 316 +E + ++ L L ++ ++G+ ++ Y L +E Sbjct: 62 LVENQYYEEEVVNNVTKAQLEELYQLIEKYNHRFPSFMGVVKFFNSYCLKSFDGSKFLES 121 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375 + A+ L K+ E + S F +TPT N+G + + SC+L Sbjct: 122 YSERALMNALFLGGKDFESV---KNILVEILSGRFQPATPTFLNAGKKQRGEYVSCYLLR 178 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D++ I A+ + L+K GG+ T +R GA I G++ GVIP +K+ D+ Sbjct: 179 VEDNMESIARAVTTSLQLSKRGGGVALSLTNLREFGAPIKQIQGQATGVIPVMKILEDSF 238 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 NQ G+R+GA YL H D+ FLD ++ D++ R ++ +P++ + Sbjct: 239 SYANQLGQRQGAGAVYLHAHHPDIMTFLDSKRENADEKIRIKSLSLGIVVPNITFELAKN 298 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554 N LFSP D+ +YG F E K+ + + A ++ + + F Sbjct: 299 NEDMALFSP---YDVEKVYGVPFSDIKVTEEYYNMLNNPKIRKTFVKARKFFQTVAELHF 355 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV------------CNL 602 E+G+P++ F D N R + G + SNLC+EI +SS E CNL Sbjct: 356 ESGYPYLLFDDTVNDR--NPNAGRIVMSNLCSEIVQSSSLTEYDTDLTVKKLGEDISCNL 413 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 GS+N+ N D+ K ++ + D++C N +RA+GLG M Sbjct: 414 GSMNVDKLM-NAGSDFGKSVFYAIKSLDHVSRGCDLSCA--PSINHGNRNNRALGLGAMN 470 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVF 721 + + Y SPEA+E + +++HA AS LA+E Y +FK S + G + Sbjct: 471 LHGFFAVNEVYYDSPEALEFTNLFFYALAYHAYKASNLLAKERNETYKNFKSSKYATGEY 530 Query: 722 PIDSIG-----------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 + E+ + + +++ W EL + +K G+ NS+ +A+APT Sbjct: 531 FDKYTKCKSDLYTAKLPKVIELFKKHNVTLPTQIDWSELVESIKKYGLANSHVLAVAPTG 590 Query: 771 TIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 +I+ + + S+ P + V+ G V L Y Sbjct: 591 SISYLSSCTPSLQPVVSPVEVR--KEGKLGRV-------------------YSLAYK--- 626 Query: 831 IGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 + ++ K + A+E+ P +I+ ++ QK +DQA SL L++++ + + L+ Sbjct: 627 ------LDENNYKYYKDGAYELGPNPIIDIVAQAQKHVDQAISLTLFMNDKATTRDLNKA 680 Query: 889 YRQAWLMGLKTTYYLR 904 Y +A+ + YY+R Sbjct: 681 YIRAFKAKCSSIYYVR 696 >gi|284009250|emb|CBA76358.1| ribonucleoside-diphosphate reductase alpha chain [Arsenophonus nasoniae] Length = 709 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 170/691 (24%), Positives = 285/691 (41%), Gaps = 66/691 (9%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E + E + + L + +LG Y Y L +G Sbjct: 56 EKLDFLVAENYYESAILAQYEFTFIKKLFQQAYNHKFRFQTFLGAFKYYTSYTLKTFDGR 115 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA ++ A + N + S F +TPT N G + +L S Sbjct: 116 RYLERYEDRVCMVALTLAQG---NQELASQLVNEIISGRFQPATPTFLNCGKKQRGELVS 172 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ T +R GA I +S GVIP +K+ Sbjct: 173 CFLLRIEDNMESIGRSVNSALQLSKRGGGVAFLLTNLREAGAPIKLIENQSSGVIPVMKM 232 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 233 LEDAFSYANQLGARQGAGAVYLHAHHPDILSFLDTKRENADEKIRIKTLSLGVVIPDITF 292 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP ++ + + EIA + + +KI+A + + Sbjct: 293 HLAKNNQDMYLFSPYDIERCYGVPMS--EIAITEKYSEMVNNKNIRKQKINAREFFLTLA 350 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN-------LG 603 + FE+G+P+I F+D N +P G ++ SNLC+EI + + Sbjct: 351 EIQFESGYPYILFEDNANRLNPIY--GRINMSNLCSEILQVNDASIYDENLDYRHVGKDI 408 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + D A +I A+R L V D+ ++ ++ N AIGLG M Sbjct: 409 SCNLGSMNIAKTMDSPNFAHSIEIAIRALTAVSDMSQIQSVPSIQEGNKKSHAIGLGQMN 468 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF 721 L HI Y S E ++ + ++++A+ AS +LA ER A+S F S + G + Sbjct: 469 LHGYLAREHIYYGSEEGIDFTNIYFYTVTYYALQASNKLAIERQHAFSGFAHSKYASGEY 528 Query: 722 PIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 I + + E A++ + W +LK+ + G+ N N AI PT +I+ Sbjct: 529 FEKYINQQWQPKTEKIKQLFQRSAIHIPTCEDWQQLKQSIMEHGIYNQNLQAIPPTGSIS 588 Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ G +L N Sbjct: 589 YINHSTSSIHPIVARIEIRKEGKIGRVYYPAPYLTN------------------------ 624 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQ 891 + + + A++I +I++ + + +DQ SL L+ + + + ++ Sbjct: 625 -------ENLEYYQDAYQIGAEKIIDTYAAATQHVDQGLSLTLFFTDDATTRDINRAQIY 677 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 AW G+KT YY+R + +STL+G + K Sbjct: 678 AWKKGIKTLYYIR------IRQSTLEGTEVK 702 >gi|238759172|ref|ZP_04620340.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] gi|238702588|gb|EEP95137.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia aldovae ATCC 35236] Length = 709 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 184/737 (24%), Positives = 306/737 (41%), Gaps = 77/737 (10%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S S+L+ + + L + + + ++ AR + + + +K + Sbjct: 5 SSSELDYHSLNAMLNLYDADGHIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKLDY---- 60 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 +EEG + + E + L ++ +LG Y Y L Sbjct: 61 ---------LVEEGYYEKEVLERYDFSFIKSLFQQAYGKKFRFPTFLGAFKYYTSYTLKT 111 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + VA+ LA+ A E + S F +TPT N G + Sbjct: 112 FDGKRYLERYEDRVCMVALTLAVG---NPTLARELVEEIISGRFQPATPTFLNCGKKQRG 168 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I A+ L+K GG+ + +R +GA I +S GVIP Sbjct: 169 ELVSCFLLRIEDNMESIGRAINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 228 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 229 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 288 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 D+ + N LFSP +V ++ + E E Y D I+ + I A + Sbjct: 289 DITFELAKNNEEMYLFSPYDVEQVYGVPMSEIS-ISEKYREMVDNKRIRKSK-IKAREFF 346 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET-------AV 599 + + + FE+G+P++ F+D N +P G ++ SNLC+EI +S+ E + Sbjct: 347 QVLAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNSATEYNDDLSYRHI 404 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658 S NL + + D TI TA+R L V D+ N ++ +K N AIGL Sbjct: 405 GKDISCNLGSLNIAHTMDSPDFGKTIETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGL 464 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWD 717 G M L I Y S EA++ + + +HAI AS +LA ERG+Y F S + Sbjct: 465 GQMNLHGYLARERIFYGSEEALDFTNIYFYNVVYHAIRASNQLAMERGSYFKGFDQSTYA 524 Query: 718 QGVFPID-----SIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPT 769 G + A+VR+ A S + W L++ V G+ N N A+ PT Sbjct: 525 SGHYFTKYIEQGWQPKTAKVRELFATAGISIPNQQDWTALRQSVMEHGIYNQNLQAVPPT 584 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + ++ G ++ N+ Sbjct: 585 GSISYINHSTSSIHPIISPIEIRKEGKIGRVYYPAPYMTND------------------- 625 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + + A++I P +I++ + + +DQ SL L+ + S + ++ Sbjct: 626 ------------NLEYYHDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFRDTASTRDINK 673 Query: 888 IYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 674 AQIYAWKKGIKTIYYIR 690 >gi|315657773|ref|ZP_07910653.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491570|gb|EFU81181.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 733 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 167/722 (23%), Positives = 285/722 (39%), Gaps = 83/722 (11%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + + AR + + + +K + +EEG E Sbjct: 54 DADREAARQYFLQHVNKNTVFFHDLREKLDY-------------LVEEGYYEAETLEQYN 100 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332 + L + +LG Y Y L +G R E + RV M Sbjct: 101 FEFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLA 157 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 E+ AV+ + + + +TPT N+G + ++ SCFL + D++ I + Sbjct: 158 RGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSAL 217 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GV+P +K+ D+ NQ G R+GA Y Sbjct: 218 QLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 277 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 + +H D+ FLD ++ D++ R ++ +PD+ + LFSP D+ Sbjct: 278 ISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVE 334 Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F E Y D I+ +KI A ++ + + FE+G+P+I F+D N Sbjct: 335 RVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNR 393 Query: 570 RSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 +P + V ++ E + + CNLGS+N+ + Sbjct: 394 ANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKTLESP----- 448 Query: 620 KLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 A +I A+R L V D+ + ++ N AIGLG M L I Y S E Sbjct: 449 DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDE 508 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV 732 ++ + +F+A+ AS LA ERG + F+ S + G + D A+V Sbjct: 509 GLDFTNMYFYATAFYALKASHALAIERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKV 568 Query: 733 RDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ + + W L +K G+ N N AI PT +I+ I + SI P + Sbjct: 569 RELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKI 628 Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 ++ G ++ +G++ + A Sbjct: 629 EIRKEGKIGRVYYPAPYM--------------------TNGNL-----------DYYQDA 657 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + K +DQ SL L+ + + + ++ AW G+K+ YY+R R Sbjct: 658 YEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQ 717 Query: 908 AT 909 A Sbjct: 718 AA 719 >gi|322411233|gb|EFY02141.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 728 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 176/726 (24%), Positives = 304/726 (41%), Gaps = 82/726 (11%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHI-NGSR 313 I+EG + + + D + A Y++D+ F +G Y Y L +G Sbjct: 55 LAYLIKEGYYEQAIFDPYPDDVIKE-AFQYAYQQDYRFLNLMGAMKFYQSYALKTLDGKY 113 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + RV M + + F +TPT N+G + + SC Sbjct: 114 YLETVED---RVVMNALFLANGDQTLLFNLIKDMLHRRFQPATPTFLNAGKKRRGEYISC 170 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +L + D++ I A+ + L+K GG+ T +R +GA I G ++ G++P +K+ Sbjct: 171 YLLRIEDNMESISRAIGTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIVPVMKLL 230 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G+R+GA YL H +V FLD ++ D++ R + IPD+ + Sbjct: 231 EDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLALGLVIPDITFQ 290 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550 +N LFSP D+ +YGK+ E + + ISA L++ + Sbjct: 291 LAKENKEMALFSP---YDIKRVYGKDMSDISITEEYNKLLANPAIKKTYISARKLFQLIA 347 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETA 598 + FE+G+P++ F D N R+P G + SNLC+EI S E Sbjct: 348 ELHFESGYPYLLFDDTVNQRNPHAQKGRIVMSNLCSEIAQVSTESTYNDDLSFKDIGEDI 407 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 CNLGSIN+ D + I T++R LD V + +K N + A+G Sbjct: 408 CCNLGSINIAEA----MADAKHFSQLITTSIRALDQVSRASDLSCAPSIEKGNAANHAVG 463 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L H+ Y S EAV+ D +++HA AS +LA+E+GA++ F+ S + Sbjct: 464 LGAMNLHGFLATNHLYYDSEEAVDFTDLFFHTMAYHAFKASCQLAKEKGAFADFERSTYA 523 Query: 718 QGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIGMRNSNCMAIAPT 769 G + + A+ + + W L + ++T G+ N++ +A+APT Sbjct: 524 DGSYFKQYVIEDAKPKTKRIAALLKSYGFQLPTVADWKALVRDIQTYGLANAHLLAVAPT 583 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ + + S+ P + V+ + V ++ Sbjct: 584 GSISYLSSCTPSLQPVVAPVEVRKEGNLGRIYVPAY------------------------ 619 Query: 830 SIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 +I + + A+E+ P +I+ + QK +DQA SL L++ + + + L+ Sbjct: 620 ------QINQENYAYYERGAYEMGPEPIIKIVAAAQKHVDQAISLTLFMTDQATTRDLNR 673 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSD 947 Y QA+ + + YY+R R L D +S + ++ Sbjct: 674 SYIQAFKLKCASIYYVRVR-------------QEVLAGSEQYDEDSQLDMVDKNGLTDTN 720 Query: 948 TECEVC 953 EC+ C Sbjct: 721 NECQSC 726 >gi|255656921|ref|ZP_05402330.1| ribonucleoside-diphosphate reductase alpha chain [Clostridium difficile QCD-23m63] gi|296452238|ref|ZP_06893945.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP08] gi|296877590|ref|ZP_06901621.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP07] gi|296258925|gb|EFH05813.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP08] gi|296431441|gb|EFH17257.1| ribonucleotide-diphosphate reductase subunit alpha [Clostridium difficile NAP07] Length = 699 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 156/699 (22%), Positives = 291/699 (41%), Gaps = 59/699 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 RE L++ ++ + + L E I+EG ++ + + + + ++ Sbjct: 25 REALSSYIEEFIQPKLRKFNNL-EERLKYLIDEGYYSKEVINQYSMDFIKNIYEIIDKQK 83 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 Y+ Y Y L N +E + VA+ L + + + + Sbjct: 84 FEFQSYMSANKFYQNYALKSNDGKKILETYNDKVLIVALTLG---NGNKDLVLNLADKIV 140 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+ R ++ SCFL +V D GI A+ + L+K GG+ + + Sbjct: 141 KQEFQPATPTFLNAGRKRAGEMVSCFLLSVEDSTEGISYAISSSNHLSKIGGGVALNLSK 200 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I G + GV+ K+ + NQ G R+G+ YL +H D E +D + Sbjct: 201 LRASGESIKDIEGAAGGVVGVAKMLEQSFSYFNQMGARQGSGAVYLTVFHPDFELLMDTK 260 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD FM+ +N F P V + + E E + Y+ Sbjct: 261 KINADEKIRLATLSLGAIIPDKFMELAEKNEVAYAFYPHTVYKKYGVSLDEIE-MNKWYD 319 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + +I+ ++I+ + K+ M E+G+P++ + D N + +G++ SNLC Sbjct: 320 KLVNDNDIRK-KEINPRQMLTKIAQMQQESGYPYVVYIDTANREHTLKDIGIIKMSNLCC 378 Query: 587 EITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-I 638 EI + E S NL + N D + ST+ TA+R L V D Sbjct: 379 EIFQYQTHSEIEGYGGKNEWGQDISCNLGSLNIANVMDNKTIESTVETAIRALSFVADST 438 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + SN +IGLG M L +I Y S +A++ ++ + +++I AS Sbjct: 439 DIKPVPTVSNSNSKSHSIGLGAMNLHGYLVRENILYTSDDAIDFSNVFFAMVRYYSIKAS 498 Query: 699 VELAQE-RGAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MNRTSRLPWDE 748 +++A E + F S + +G + + +V+ + ++ W + Sbjct: 499 MKIAIEKNQTFEGFDKSEYAKGRNSKVLSKYYEQSYLPKSEKVKALFEGIYIPTKEDWTK 558 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L VK G+ N+ MAIAPT +I+ + + SI P + + V++ FL N Sbjct: 559 LLDEVKEKGIYNAYLMAIAPTQSISYVQNSTSSIMPITEPVEVRTYGDSTTIYPMPFLTN 618 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ + +A+ +D +I+ + Q +D Sbjct: 619 D-------------NIL------------------YYQSAYRMDMRKVIDLVATVQNHVD 647 Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q S L++ + + + + Y A+ GLK+ YY R++ Sbjct: 648 QGISTTLFVTDEKTTRDIARHYIYAYKKGLKSLYYTRTK 686 >gi|320103134|ref|YP_004178725.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Isosphaera pallida ATCC 43644] gi|319750416|gb|ADV62176.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Isosphaera pallida ATCC 43644] Length = 1048 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 131/666 (19%), Positives = 228/666 (34%), Gaps = 40/666 (6%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL--------SSFHFMCS 354 D YF E + + V Y+ + Sbjct: 116 DGYFATKEDG--ERFYDELTALCLFQYGSFNSPVWFNVGLYHQYGIAGSSTNWRWDEETR 173 Query: 355 TPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 T N+ PQ S+CF+ +V DD+ I AML KY G G D + +R + Sbjct: 174 TVVQTNTAYEFPQGSACFIQSVQDDMADIMRLATSEAMLFKYGSGTGTDLSTLRSSKEKL 233 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 G G+ G + F+KV + A V GGK R+ A L+ WH D+ EF++ + Sbjct: 234 AG-GGRPSGPVSFMKVYDAIASVVKSGGKTRRAAKMQTLKVWHPDIVEFIECKVKEERKA 292 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 V + + D + + E E G Sbjct: 293 HALIRQGYDANFNGEAYSSV------MFQNANLSVRATDAFLRAVEEDGEWVTYAVTTG- 345 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 K A L ++ ++ G P + ++D + ++SSN C+E Sbjct: 346 -KPMGVYRARDLMERIAQSAWQCGDPGMQYEDTIQRWHTCPNTAPINSSNPCSEYMF--- 401 Query: 594 SEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHT 652 + + CNL SINL+ + FD ++ + R + + ++D + ++ ++H Sbjct: 402 -IDDSACNLASINLMKFRREDGTFDVERFRAACRIYLTAQEILVDHVSYPTDRIALNSHR 460 Query: 653 HRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFK 712 R +GLG S + Y S +A + A S +A G + F Sbjct: 461 FRPLGLGYANLGSLIMASGRAYDSEAGRALAAGITAVMHGEANLTSARIAAHLGPFEGFA 520 Query: 713 GSLWDQ---GVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 + D++ + + +R W E + + G RNS IAPT Sbjct: 521 VNREPMLKVMEMHRDAVERIDPTLCPANVLEAARAVWKECLEMGREHGFRNSQVTVIAPT 580 Query: 770 ATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 TI+ + + I+P + Y G +VN + LK DE + L + Sbjct: 581 GTISFMMDCDTTGIEPDIALVKYKNLAGGGMLKIVNRTVPLALKTLGYDDEEIKRVLAHV 640 Query: 828 D--GSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD 878 D ++ + + + AF I + I+ + Q ++ A S + + Sbjct: 641 DAHDTVEGAPDLKPEHLDVFDCAFKPSGGQRSIPYLGHIKMMAAVQPFLSGAISKTVNMP 700 Query: 879 -EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 E + + + Y +W +GLK R S S +T + + T S Sbjct: 701 RESTVEDVMGAYLTSWKLGLKAIAIYRDGSKESQPLTTSRETSHNHKEEKGKEQGLDTVS 760 Query: 938 LGIPSS 943 + Sbjct: 761 PKDHET 766 >gi|257140761|ref|ZP_05589023.1| ribonucleotide reductase system [Burkholderia thailandensis E264] Length = 843 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 142/655 (21%), Positives = 253/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 + L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+D LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y + E + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA ERGA+ F S + L + D++++ ++ Sbjct: 412 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G + + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609 >gi|83717926|ref|YP_440130.1| ribonucleotide reductase system [Burkholderia thailandensis E264] gi|83651751|gb|ABC35815.1| ribonucleotide reductase system [Burkholderia thailandensis E264] Length = 881 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 142/655 (21%), Positives = 253/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 52 QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 107 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 + L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 108 AGRIMSAAGSSIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 167 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 168 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 227 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 228 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 276 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 277 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 333 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+D LA RT VR LD+V Sbjct: 334 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 389 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y + E + A + A Sbjct: 390 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAY 449 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA ERGA+ F S + L + D++++ ++ Sbjct: 450 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIREAIRR 490 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 491 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 539 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G + + +A ++ + + Q +ID + S Sbjct: 540 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 592 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 593 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 647 >gi|238794432|ref|ZP_04638042.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] gi|238726227|gb|EEQ17771.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia intermedia ATCC 29909] Length = 693 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 171/711 (24%), Positives = 292/711 (41%), Gaps = 75/711 (10%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + +EEG + + E Sbjct: 16 DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLERYDFS 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + VA+ LA Sbjct: 63 FIKGLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 A E + S F +TPT N G + +L SCFL + D++ I ++ L Sbjct: 120 NPTLAQELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ + Sbjct: 240 AHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVEQV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG + + +A + ++ + KI A ++ + + FE+G+P++ F+D N +P Sbjct: 297 YGVPMSEISISEKYRAMVDDKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTVNRANP 356 Query: 573 QQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTI 625 G ++ SNLC+EI +S E + S NL + + D +I Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAHTMDSPDFGKSI 414 Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V D+ N ++ +K N AIGLG M L I Y S EA++ + Sbjct: 415 ETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735 + +HA+ AS +LA ER + F S + G + I + + + Sbjct: 475 IYFYTVVYHALRASNQLAIERGKHFKGFDESDYASGTYFTKYIEQRWQPKTAKVQALFAQ 534 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 A+ + W L++ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 535 AAIVLPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEG 594 Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ N+ + + A++I P Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGPE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + S + ++ AW G+KT YY+R Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTASTRDINKAQIYAWKKGIKTIYYIR 674 >gi|304373443|ref|YP_003856652.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyorhinis HUB-1] gi|304309634|gb|ADM22114.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyorhinis HUB-1] gi|330723640|gb|AEC46010.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma hyorhinis MCLD] Length = 721 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 177/775 (22%), Positives = 311/775 (40%), Gaps = 109/775 (14%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY------FCRYIEEGVKARL 268 Y + A+ L +E + H ++ Y ++ IE Sbjct: 18 EYITLNAKSKLFLKYKESYKFDQQAADSYIKHHIEPRYRKFNSVRERITWLIENDYYDEK 77 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAM 326 + +L L + + ++G Y Y L N +E Q + A+ Sbjct: 78 VINEYTFEELEKLTQEAYKYKHHFPSFMGALKFYSSYALKSNDSQEYLEHFQERALLNAL 137 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFG 385 LA +E+ + + F +TPT N+G ++ + SC+L + D++ I Sbjct: 138 FLAKGNSERASSILR---QIMLGRFQPATPTFLNAGKKNRGEYVSCYLIRIEDNMESISR 194 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+ + L+K GG+ + +R +GA I ++ GVIP +K+ D+ NQ G+R+ Sbjct: 195 AVTTSLQLSKRGGGVSILLSNLREMGAPIKKIENQATGVIPVMKILEDSFSYANQLGQRQ 254 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 GA YL H D+ FLD ++ D++ R ++ IPD+ + N LFS Sbjct: 255 GAGAVYLNVHHPDILSFLDTKRENADEKIRIKSLSLGVVIPDITFELAKDNKDMALFS-- 312 Query: 506 EVSDLHDLYGKEFEIAYENYE--RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITF 563 V D+ Y K F E + + IK I+A L+ + + FE+G+P+I F Sbjct: 313 -VYDVEREYKKAFSDISITQEYYKMLENPNIKKNF-INARKLFTTIAELHFESGYPYILF 370 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCNLGSINLLAHF 611 D N R H + SNLC+EI S+ E CNLGS+N+ Sbjct: 371 DDTVNRR--NAHKNRIVMSNLCSEIVQPSTPSEYLPDLTFTKKGEDICCNLGSLNIDKAM 428 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + + + A+ LD+V + + + N+ + A+GLG M L Sbjct: 429 ESG----KEFGELVYQAIVSLDHVSRTSDLSSAPSIENGNNKNHAVGLGAMNLHGFLATN 484 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 HI Y S EA++ + +++HA +S LAQ+ GA+ FK S + G + + Sbjct: 485 HIYYDSKEALDFTNIFFYTMAYHAFKSSSILAQKFGAFEHFKESKFADGSYFDKYTKVSE 544 Query: 731 EV-----------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + ++ + ++ W EL + +K +G+ NS+ MA+APT +I+ + + Sbjct: 545 KEYQPKTQKIKEVFEKYQVTIPTKQDWIELVENIKRVGIANSHLMAVAPTGSISYLSSCT 604 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 S+ P + + V ++ +N+ + Sbjct: 605 PSLQPVVAPVETRKEGKIGRVYVPAYKMNQ-----------------------------E 635 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898 ++K A+E+ P +I+ A+ QK IDQ+ SL L+L + + + L+ Y +A+ G Sbjct: 636 NMKFYSLGAYELGPDPIIDIAAEAQKHIDQSISLTLFLKDTATTRDLNKAYIRAFKKGCG 695 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + YY+R R + + ECE C Sbjct: 696 SIYYVRIR-------------------------------QEVLEDSENYDECEAC 719 >gi|167647819|ref|YP_001685482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caulobacter sp. K31] gi|167350249|gb|ABZ72984.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caulobacter sp. K31] Length = 744 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 144/658 (21%), Positives = 242/658 (36%), Gaps = 86/658 (13%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 F +G + RVA +A E ++ E + L+ F F+ + L Sbjct: 15 KYRFAPPDGGGDASVAETWARVAHAIAEAETPKLRKGFQAEVMDALADFKFLPAGRILAG 74 Query: 361 SGTRHP-QLSSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ V PDDL GIF ++E A+ + GG+G D++ +R GA + G Sbjct: 75 AGTARSVTLFNCFVMGVTPDDLGGIFEHVREAAVTLQQGGGVGMDFSSIRPAGARVEGVG 134 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G+R+GA+ L H D+E F+D ++ R + Sbjct: 135 ADASGPLSFMDVWDSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKRTA----NRFRN 190 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM + + W L +V R Sbjct: 191 FNLSVLVTDPFMAALDADGDWPLSFG-----------------------------GQVQR 221 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 + A LW +++ ++ P + F D N + + + +SN C E L Sbjct: 222 TVRAADLWAQLMRATYDAAEPGVIFIDRVNAANNLAYCEQILASNPCGEQMLPPY----G 277 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL N D D+L + RTAVR+LDNVIDI+ +E Sbjct: 278 ACLLGSLNLARLVDNPFEADAALDEDRLGALARTAVRMLDNVIDISRFPLEAQAVEARAK 337 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R +G+G+ G AL Y +AV + + I A AS LA E+ + + Sbjct: 338 RRLGIGVTGLADALVFCGARYGDDQAVALTQRWLGVIKREAYRASARLAAEKAPFPLYD- 396 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 ++ +E + + G+RN +IAPT T + Sbjct: 397 --------------------PQILDRPNLTSLDEETRALIAAHGLRNGCLTSIAPTGTTS 436 Query: 774 NICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + G S I+P + Y + + E + D Sbjct: 437 LLAGNVSSGIEPVFAYAYTRKVR---------------QPDGSSREEQVEDYALAVWKRL 481 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + P + +A ++ P + + Q +D + S + E + IYRQ Sbjct: 482 HGDAPPPA--AVFVSAQDLTPADHLRMQAAAQALVDSSISKTVNCPETIAFDDFADIYRQ 539 Query: 892 AWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 + +G K R + T S + P S +LG + + Sbjct: 540 GYRLGCKGLTTYRPNAITGSVLSVAPTPEPPAPTPPEPSLPSRPDTLGGATYKIKWPD 597 >gi|56964872|ref|YP_176603.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus clausii KSM-K16] gi|56911115|dbj|BAD65642.1| ribonucleoside-diphosphate reductase alpha chain [Bacillus clausii KSM-K16] Length = 698 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 157/718 (21%), Positives = 291/718 (40%), Gaps = 66/718 (9%) Query: 209 LIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARL 268 +I K+ Y +E + + + L E IE Sbjct: 15 MITKDGGYQFEK--------DKEAVHSYFVDYINQNTVFFHDL-EEKIDYLIENDYYEEE 65 Query: 269 LHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAM 326 L ++ + + ++ ++ Y+ Y L N +E + RVA+ Sbjct: 66 LLRLYTIDEIKAVMDIAYNKKFRFPSFMSAFKFYNDYALKTNDKSKILERYED---RVAI 122 Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFG 385 ++A N + S F +TPT N+ R +L SCFL + D L I Sbjct: 123 VSLFFGNGDVEKAKALVNAMISQEFQPATPTFLNAGRKRRGELVSCFLLEINDSLNDISR 182 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 A+ + L+K GG+ + + +R G I ++GV+ +K+ ++ +Q G+R+ Sbjct: 183 AVDISMQLSKLGGGVALNLSKLRAKGEAIKDVANATKGVVGVMKLLDNAFRYADQMGQRQ 242 Query: 446 GAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD 505 G+ AYL +H D+ +FLD RK + D+ R ++ IPD F++ + ++ LF P Sbjct: 243 GSGAAYLNIFHADINDFLDTRKISADEDVRVKTLSIGVVIPDKFIELMREDKDAYLFYPH 302 Query: 506 EVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFK 564 V YG+ F+ + + +V + KI+ L++K+ + E+G+P+I F Sbjct: 303 TVY---KAYGQHFDEMDMEEMYETLVDDPRVRKEKINPRRLFQKLAILRSESGYPYIMFA 359 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITL------NSSSEETAVCNLG-SINLLAHFANNQFD 617 D N H+ V SNLC+EI + E L S NL + N + Sbjct: 360 DNVNKAHANGHISNVKFSNLCSEILQASEVSTYTDYGEEDEIGLDISCNLGSINIMNVME 419 Query: 618 YDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 L +T+ A L V + N ++ N ++IGLG M L HI Y S Sbjct: 420 NKSLENTVSLATDALTRVSESTNITNAPAVRRGNKLMKSIGLGAMNLHGYLAKQHIAYES 479 Query: 677 PEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE 735 EA + A+ +++ +I S E+A+++ Y ++GS + G + I + + Sbjct: 480 EEARDFANTFFMAMNYFSIKRSAEIARDQGETYHGYEGSTYADGSYFKKYIENDFTPKFD 539 Query: 736 LAMNR------TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 ++ W L+ V G+ +S +AIAPT +I+ + + S+ P + + Sbjct: 540 KVKALFDGMFVPTKEDWQALQAFVAEHGLYHSYRLAIAPTGSISYVQSATASVMPIMERI 599 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ + + + + + A+ Sbjct: 600 EERTYGNSKTYYP-------------------------------MPGLNANNWFFYKEAY 628 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++D +++ + Q+ +DQ S L+L + + + L+ I A G+KT YY R++ Sbjct: 629 DMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 686 >gi|182435508|ref|YP_001823227.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776145|ref|ZP_08235410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces cf. griseus XylebKG-1] gi|178464024|dbj|BAG18544.1| putative vitamin B12-dependent ribonucleotide reductase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656478|gb|EGE41324.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces cf. griseus XylebKG-1] Length = 965 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 121/628 (19%), Positives = 223/628 (35%), Gaps = 36/628 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQVFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E F++ + + R D + + ++ Sbjct: 243 VDHPDIENFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 292 Query: 514 YGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 EF A E + R + V ++ A +L+RKM + P I + D N Sbjct: 293 VNDEFMKAVETGGKFGLRARMTGDVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINAWH 352 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626 G ++ SN C+E + CNL S+NL+ N F+ ++ A + Sbjct: 353 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGLGNQSFESERFAKVVE 408 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + +D I +K ++ R +G+G + L Y S +A Sbjct: 409 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 468 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMNRTS 742 ++ + S ELA G Y + + A+ + + + Sbjct: 469 TSLMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHADANAKAVHVDDLDSPVWAAA 528 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800 W ++ + G RN+ IAPT TI + ++P + + K G Sbjct: 529 TEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQ 588 Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855 +VN + L++ E + + + +G++ + + + ++ A I M Sbjct: 589 IVNGTVPQALRRLGYQPEQIEAIVAHIAENGNVVDAPALKTEHYEVFDCAMGERSISAMG 648 Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + Q WI A S + L E + + ++ +Y +AW MG+K R S Sbjct: 649 HVRMMAAIQPWISGALSKTVNLPESATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 708 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 K + T + Sbjct: 709 AKSKDKEKEEVTAKAEETIRTAVEKVVE 736 >gi|145594000|ref|YP_001158297.1| vitamin B12-dependent ribonucleotide reductase [Salinispora tropica CNB-440] gi|145303337|gb|ABP53919.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Salinispora tropica CNB-440] Length = 963 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 126/603 (20%), Positives = 227/603 (37%), Gaps = 28/603 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E A E +L F ++P FN GT Q+S+CF+ V D + I Sbjct: 111 GYFATPNDAEIFAHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILD 170 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 171 WYKEEGLIFKGGSGSGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF+ + D R D + + V Sbjct: 230 RAAKMVILDVDHPDIEEFVVTKAREEDKVRALRDAGFDMDLGGADIVSVQYQNANNSVRV 289 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + G F++ R + V I A +L+R + +E P + + Sbjct: 290 SDEFMTAVQDGGTFDLR--------GRLDGTVIDTIDAKSLFRTISQAAWECADPGLQYD 341 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 D N G + +SN C+E + + CNL S+NL+ + F+ +K Sbjct: 342 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMRFLRADGGFEVEKFVR 397 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I EK ++ +R +G+G + L +PY S + +A Sbjct: 398 SVELVITAMDISICFADFPTEKIGETTRAYRQLGIGYANLGALLMASGLPYGSDQGRSLA 457 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 ++ A S ELA GAY + + E++ A+ Sbjct: 458 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPTGAVATAVQ 517 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 R + W K G RNS +APT TI + + ++P + + K G Sbjct: 518 REATRQWTLGNKVGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 577 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L+ +E + + ++Y G + + + + + A I Sbjct: 578 SMQIVNQTVPRALRSLGYPEEQVEAIVEYIAEHGHVVDAPGLRPEHYPVFDCAMGERSIA 637 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q +I A S + + E + + ++ IY + W +GLK R Sbjct: 638 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYRDNCKVGQ 697 Query: 912 EKS 914 S Sbjct: 698 PLS 700 >gi|300718017|ref|YP_003742820.1| ribonucleoside-diphosphate reductase, alpha subunit [Erwinia billingiae Eb661] gi|299063853|emb|CAX60973.1| Ribonucleoside-diphosphate reductase, alpha subunit [Erwinia billingiae Eb661] Length = 702 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 165/673 (24%), Positives = 276/673 (41%), Gaps = 60/673 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E + EG + + + L R +LG Y Y L +G Sbjct: 49 ERLQYLVSEGYYEADVLNAYPFEFVSSLFEQAYQRRFRFQTFLGAWKFYTSYTLKTFDGK 108 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 R + F RV M A+ + S F +TPT N G + +L SC Sbjct: 109 RY--LEGFTERVCMVALTLAKGDRSLALSLMEEMLSGRFQPATPTFLNCGKQQRGELVSC 166 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 167 FLLRIEDNMESIGRSVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKML 226 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 227 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 286 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550 N LFSP D+ +YG F + + + + ++ R I+ ++ + Sbjct: 287 LAKTNQQMALFSP---YDVERIYGLPFADISISEKYEEMLADDRITRTFINPREFFQTLA 343 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------G 603 + FE+G+P+I F+D N +P G ++ SNLC+EI ++ E Sbjct: 344 EIQFESGYPYIMFEDTVNRANPI--KGRINMSNLCSEILQVNTPTEYNDDLSYRRIGKDI 401 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + + D + T+ AVR L V D + H++ ++ N AIGLG M Sbjct: 402 SCNLGSLNIAHTMDSPDFSRTVEIAVRGLTAVSDQSHIHSVPSIERGNAQSHAIGLGQMN 461 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y S A++ + I++HA+ S +AQER ++ F+ S + G + Sbjct: 462 LHGYLAREGIQYGSEVALDFTNLYFYTITYHALRTSNLMAQERGERFAGFEESRYASGEY 521 Query: 722 PIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + + R +R W EL++ V G+ N N AI PT +I+ Sbjct: 522 FAQYVEQRWQPRTPEVAALFARAGITLPGQKEWRELREAVMKHGIYNQNLQAIPPTGSIS 581 Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ +G F+ N+ Sbjct: 582 YINHATSSIHPIVSRIEIRKEGKTGRVYYPAPFMNND----------------------- 618 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + + A++I P +I++ + + +DQ SL L+ + + + ++ Sbjct: 619 --------NQAFYRDAYDIGPEAIIDTYAEATRHVDQGLSLTLFFRDTATTRDINKAQIY 670 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 671 AWKKGIKTLYYIR 683 >gi|167616835|ref|ZP_02385466.1| ribonucleotide reductase system [Burkholderia thailandensis Bt4] Length = 843 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 142/655 (21%), Positives = 252/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+D LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y + E + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDAQEGRDFAARVAREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA ERGA+ F S + L + D++++ ++ Sbjct: 412 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G + + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609 >gi|213052491|ref|ZP_03345369.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424575|ref|ZP_03357364.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650064|ref|ZP_03380117.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864814|ref|ZP_03386933.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289824436|ref|ZP_06544025.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 705 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 171/697 (24%), Positives = 290/697 (41%), Gaps = 63/697 (9%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + + + + + + E + EG + + L Sbjct: 30 QAIDAFFAAHVRPHSVKFASQH-ERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGF 88 Query: 291 FAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +LG Y Y L +G R E + VA+ LA + E A + + + S Sbjct: 89 RFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLS 145 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + + Sbjct: 146 GRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 205 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ Sbjct: 206 REAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 265 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD+ + +NA LFSP D+ YGK F + Sbjct: 266 ENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERY 322 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + V + I+A ++ + + FE+G+ +I F+D N +P G ++ SNLC+ Sbjct: 323 DELIADPHVRKTYINARDFFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCS 380 Query: 587 EITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +S+ + + S NL + + D + T+ TA+R L V D+ Sbjct: 381 EILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMS 440 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ N AIGLG M L I Y SPEA++ + I++HA+ S Sbjct: 441 HIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTS 500 Query: 699 VELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDEL 749 + LA+ER ++ F S + G + D A+VR A + +R W +L Sbjct: 501 MRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKL 560 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 + V G+ N N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 561 RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN 620 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ A++I P +I++ + + +D Sbjct: 621 -------------------------------ENLDMYQDAYDIGPEKIIDTYAEATRHVD 649 Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 Q SL L+ + + + ++ AW G+K+ YY+R Sbjct: 650 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 686 >gi|149365456|ref|ZP_01887491.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis CA88-4125] gi|218929726|ref|YP_002347601.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis CO92] gi|115348337|emb|CAL21270.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis CO92] gi|149291869|gb|EDM41943.1| ribonucleoside-diphosphate reductase 2 alpha chain [Yersinia pestis CA88-4125] Length = 693 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 164/674 (24%), Positives = 279/674 (41%), Gaps = 62/674 (9%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E IEEG + + + + L ++ +LG Y Y L +G Sbjct: 40 EKIDYLIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGK 99 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + RV M T + A E + S F +TPT N G + +L S Sbjct: 100 RYLERYED---RVCMVALTLATGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVS 156 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I ++ L+K GG+ + +R +GA I +S GVIP +K+ Sbjct: 157 CFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKM 216 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 217 LEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITF 276 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKM 549 + N LFSP D+ +YG + + + ++ + KI A ++ + Sbjct: 277 ELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQIL 333 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL------- 602 + FE+G+P++ F+D N +P G ++ SNLC+EI ++ E Sbjct: 334 AEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRRIGKD 391 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 S NL + D +I A+R L V ++ N ++ +K N AIGLG M Sbjct: 392 ISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQM 451 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGV 720 L + Y S EA++ + +++HAI AS +LA ER + F S + G Sbjct: 452 NLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGA 511 Query: 721 FPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 F I + + + + ++ W L++ V G+ N N A+ PT +I Sbjct: 512 FFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSI 571 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G ++ N+ Sbjct: 572 SYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND---------------------- 609 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYR 890 + + A++I P +I++ + + +DQ SL L+ + + + ++ Sbjct: 610 ---------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQI 660 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 661 YAWKKGIKTIYYIR 674 >gi|256963239|ref|ZP_05567410.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|307272282|ref|ZP_07553542.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0855] gi|312952107|ref|ZP_07770988.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0102] gi|256953735|gb|EEU70367.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|306511171|gb|EFM80181.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0855] gi|310629889|gb|EFQ13172.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0102] gi|315153941|gb|EFT97957.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0031] Length = 719 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N + ++R R L V D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKNGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|297191628|ref|ZP_06909026.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces pristinaespiralis ATCC 25486] gi|197719369|gb|EDY63277.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces pristinaespiralis ATCC 25486] Length = 964 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 124/628 (19%), Positives = 230/628 (36%), Gaps = 36/628 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E F++ + + R D + + ++ Sbjct: 243 VDHPDIENFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 292 Query: 514 YGKEFEIAYENYERQADRGEIK--VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 EF A E+ + R + V ++ A +L+RKM + P I + D N Sbjct: 293 VNDEFMKAVESGGKFGLRARMTGDVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINHWH 352 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626 G ++ SN C+E + CNL S+NL+ N FD ++ + Sbjct: 353 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFDVERFTKVVE 408 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + +D I +K ++ +R +G+G + L Y S +A Sbjct: 409 LVITAMDISICFADFPTQKIGENTRAYRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 468 Query: 687 MEFISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTS 742 ++ + S ELA G Y + + + + +A D+L + + Sbjct: 469 TSLMTGTSYKRSAELAAVVGPYDGYARNAEPHKRVMKQHADANTVAVRMDDLDSPIWAAA 528 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800 W ++ + + G RN+ IAPT TI + ++P + + K G Sbjct: 529 TEAWQDVIRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQ 588 Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855 +VN + L++ E + + + G++ + + + ++ A I M Sbjct: 589 IVNGTVPQALRRLGYQPEQIEAIVAHIADHGNVIDAPGLKTEHYEVFDCAMGERSISAMG 648 Query: 856 LIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + Q WI A S + L E + + ++ +Y +AW MG+K R S Sbjct: 649 HVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGVKALAIYRDNCKVGQPLS 708 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 K K T+ + Sbjct: 709 AKKKEKEKAEVTQKTEETIRAAVEKVVE 736 >gi|16761589|ref|NP_457206.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143069|ref|NP_806411.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25328484|pir||AG0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503890|emb|CAD05918.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29138702|gb|AAO70271.1| ribonucleoside-diphosphate reductase 2 alpha chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 714 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 171/697 (24%), Positives = 290/697 (41%), Gaps = 63/697 (9%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 + + + + + + E + EG + + L Sbjct: 39 QAIDAFFAAHVRPHSVKFASQH-ERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGF 97 Query: 291 FAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 +LG Y Y L +G R E + VA+ LA + E A + + + S Sbjct: 98 RFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLS 154 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N G + +L SCFL + D++ I A+ L+K GG+ + + Sbjct: 155 GRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNL 214 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I +S GVIP +K+ D NQ G R+GA YL H D+ FLD ++ Sbjct: 215 REAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKR 274 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD+ + +NA LFSP D+ YGK F + Sbjct: 275 ENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSP---YDIQRRYGKPFGDIAISERY 331 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + V + I+A ++ + + FE+G+ +I F+D N +P G ++ SNLC+ Sbjct: 332 DELIADPHVRKTYINARDFFQTLAEIQFESGYLYIMFEDTVNRANPI--AGRINMSNLCS 389 Query: 587 EITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +S+ + + S NL + + D + T+ TA+R L V D+ Sbjct: 390 EILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMS 449 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ N AIGLG M L I Y SPEA++ + I++HA+ S Sbjct: 450 HIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTS 509 Query: 699 VELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDEL 749 + LA+ER ++ F S + G + D A+VR A + +R W +L Sbjct: 510 MRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKL 569 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 + V G+ N N A+ PT +I+ I + SI P + ++ +G F+ N Sbjct: 570 RDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN 629 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + ++ A++I P +I++ + + +D Sbjct: 630 -------------------------------ENLDMYQDAYDIGPEKIIDTYAEATRHVD 658 Query: 869 QAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 Q SL L+ + + + ++ AW G+K+ YY+R Sbjct: 659 QGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIR 695 >gi|124262925|ref|YP_001023395.1| putative ribonucleotide reductase protein [Methylibium petroleiphilum PM1] gi|124262171|gb|ABM97160.1| putative ribonucleotide reductase protein [Methylibium petroleiphilum PM1] Length = 862 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 144/666 (21%), Positives = 254/666 (38%), Gaps = 70/666 (10%) Query: 298 LQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCST 355 + L ++Y + +E+ F RV+ G+A E +E F++ + + Sbjct: 18 VDTLLEKYAKGDEQTAVEI----FARVSKGIAQAEKPELREHFEKVFFDNMQAGAIGAGR 73 Query: 356 PTLFNSGTRHPQLSSCFLTTV--------PDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 L++CF+ V D GI+ AL + A + GG+G D++ + Sbjct: 74 IMSAGGSEIRATLANCFVQPVGDAVMGQDDDGYPGIYVALLQAAETMRRGGGVGYDFSRI 133 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + GT+ + G ++ V + + V G R+GA L H DV EF+ ++ Sbjct: 134 RPKGAFVKGTHSSASGPCSYMDVFDKSCKTVESAGSRRGAQMGVLRIDHPDVMEFITAKR 193 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 + R ++ N + I + FM+ V W L E G AY Sbjct: 194 ----EEGRWNNFNVSVGIVEGFMEAVVAGGDWELVHKAEPGKEQKDAG-----AYR---- 240 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + V+ K+ A ++ ++ ++ P I F D N + ++ + ++N C E Sbjct: 241 --RADGLWVYSKVPAKQIFDTIMRSTYDFAEPGILFIDNMNKDNNLRYCERIEATNPCAE 298 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHT 642 L C+LG + L + FD++ + + VR LDNV+D+ Sbjct: 299 EPLPPY----GCCDLGPVILPRFVRDPFTPAARFDFEAYRAAVAVQVRFLDNVLDVTHWP 354 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 +E+ ++ + R IG+G G L +L + Y S E A E + A ASV+LA Sbjct: 355 LEQQEQESRNKRRIGVGYTGLGDTLIMLGLRYNSDEGRAKAVEITREMRDAAYLASVDLA 414 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +E+G + F + L + + +K ++ G+RNS+ Sbjct: 415 KEKGRFPLFNAEKY-------------------LEEGTFASRLPEHIKAAIREHGIRNSH 455 Query: 763 CMAIAPTATIANIC--GVSQSIDPSYQNLY--VKSNMSG--DFTVVNSFLVNELKQ---R 813 +AIAPT T++ S I+P++ Y K G F V + Sbjct: 456 LLAIAPTGTVSLAFADNASGGIEPAFSLAYNRKKRTKDGGHTFYAVKDHAFRVFSETVCE 515 Query: 814 DLWDEAMISDLKYHDGSI---GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +I + + S G ++ D L TA ++ ++ Q +ID + Sbjct: 516 PALRDGLIDAVCNYKDSFVVGGQTYQVKDVLPASFVTALDMTAAEHLQMMKDVQPYIDTS 575 Query: 871 QSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT 929 S + + + +Y AW GLK R + S A P Sbjct: 576 ISKTVNVPADYPYDDFKGLYLAAWQAGLKGLSTYRPNATLGSVLSVGAPAPAPAAAAPAV 635 Query: 930 DPNSST 935 P+ Sbjct: 636 TPDDDP 641 >gi|162420596|ref|YP_001607866.1| ribonucleotide-diphosphate reductase subunit alpha [Yersinia pestis Angola] gi|162353411|gb|ABX87359.1| ribonucleoside-diphosphate reductase, alpha subunit [Yersinia pestis Angola] Length = 716 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 171/738 (23%), Positives = 302/738 (40%), Gaps = 79/738 (10%) Query: 194 SESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQ 249 S+S+L+ + + L + + + ++ AR + + + +K + Sbjct: 12 SDSELDYHSLNAMLNLYDADGRIQFDKDRLAARQYFLQHVNQNTVFFHNLQEKIDY---- 67 Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH- 308 IEEG + + + + L ++ +LG Y Y L Sbjct: 68 ---------LIEEGYYEKEVLDQYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKT 118 Query: 309 INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP- 366 +G R E + VA+ LA T + A E + S F +TPT N G + Sbjct: 119 FDGKRYLERYEDRVCMVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRG 175 Query: 367 QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIP 426 +L SCFL + D++ I ++ L+K GG+ + +R +GA I +S GVIP Sbjct: 176 ELVSCFLLRIEDNMESIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIP 235 Query: 427 FLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 +K+ D NQ G R+GA YL H D+ FLD ++ D++ R ++ IP Sbjct: 236 IMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIP 295 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVAL 545 D+ + N LFSP D+ +YG + + + ++ + KI A Sbjct: 296 DITFELAKNNEEMYLFSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREF 352 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL--- 602 ++ + + FE+G+P++ F+D N +P G ++ SNLC+EI ++ E Sbjct: 353 FQILAEIQFESGYPYMMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRR 410 Query: 603 ----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 S NL + D +I A+R L V ++ N ++ +K N AIG Sbjct: 411 IGKDISCNLGSLNIAQVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVTSIEKGNQESHAIG 470 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L + Y S EA++ + +++HAI AS +LA ER + F S + Sbjct: 471 LGQMNLHGYLARERLFYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDY 530 Query: 717 DQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G F I + + + + ++ W L++ V G+ N N A+ P Sbjct: 531 ASGAFFSKYIEQSWQPKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPP 590 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ I + SI P + ++ G ++ N+ Sbjct: 591 TGSISYINHSTSSIHPIVSPIEIRKEGKIGRVYYPAPYMTND------------------ 632 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 + + A++I P +I++ + + +DQ SL L+ + + + ++ Sbjct: 633 -------------NLEYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDIN 679 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 680 KAQIYAWKKGIKTIYYIR 697 >gi|153010277|ref|YP_001371491.1| ribonucleotide-diphosphate reductase subunit alpha [Ochrobactrum anthropi ATCC 49188] gi|151562165|gb|ABS15662.1| ribonucleoside-diphosphate reductase, alpha subunit [Ochrobactrum anthropi ATCC 49188] Length = 739 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 175/737 (23%), Positives = 295/737 (40%), Gaps = 85/737 (11%) Query: 198 LETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 L+ + + L + E + L++ R+ + + T L + Sbjct: 39 LDYHALNAMLNLYDDE-------GKIQLDRDRQAARQYFLQHVNQNTVF-FHNLREKIDY 90 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH-INGSRI- 314 E + +L + +F Y + F F +LG Y Y L +G R Sbjct: 91 LVTEGYYEQEVLDQYSFNFVRDLFDEA--YAKKFRFPTFLGAFKYYTSYTLKTFDGKRYL 148 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E + RV M E+ A + + + +TPT N+G + +L SCFL Sbjct: 149 ERYED---RVCMVALTLARGNEQLARNLMEEIIAGRYQPATPTFLNAGKKQRGELVSCFL 205 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D++ I ++ L+K GG+ T +R GA I +S G+IP +K+ D Sbjct: 206 LRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREAGAPIKQIQNQSSGIIPVMKLLED 265 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 266 SFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELA 325 Query: 494 TQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 N LFSP +V ++ L Y A + +KI+A ++ + Sbjct: 326 KNNEDMYLFSPYDVERVYGVPLTEISITEKYRELVDDARITK----KKINAREFFQVLAE 381 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAV 599 + FE+G+P+I F+D N +P G + SNLC+EI + Sbjct: 382 IQFESGYPYIMFEDTVNRANPI--DGRITMSNLCSEILQVSEASIFGEDLSYDHLGKDIS 439 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGL 658 CNLGS+N+ + D TI T++R L V D+ ++ + N AIGL Sbjct: 440 CNLGSLNIASA-----MDSSDFGKTIETSIRALTAVSDMSQIGSVPSVARGNDESHAIGL 494 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWD 717 G M L I Y S E V+ + +++HAI AS +A E ++ F+ S + Sbjct: 495 GQMNLHGYLARERIYYGSEEGVDFTNIYFYTVTYHAIRASNLIAVETGKSFKGFEKSKYA 554 Query: 718 QGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 G + L E ++ + ++ W +LK V G+ N N A+ PT Sbjct: 555 TGEYFAKYTEQLWEPATQKVREIFEKAGIAIPTQDDWRDLKNAVMEGGLYNQNLQAVPPT 614 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ I + SI P + ++ G +F+ N+ Sbjct: 615 GSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAAFMTND------------------- 655 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + A+EI P +I++ + + +DQ SL L+ + + + ++ Sbjct: 656 ------------NLDYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINR 703 Query: 888 IYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 704 AQIYAWKKGIKTIYYIR 720 >gi|333024021|ref|ZP_08452085.1| putative ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. Tu6071] gi|332743873|gb|EGJ74314.1| putative ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. Tu6071] Length = 921 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 130/668 (19%), Positives = 241/668 (36%), Gaps = 42/668 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L D + E Q F + E E L F Sbjct: 53 RETGLKQLID-RIVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSF 102 Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 103 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 162 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H DVE F++ + + Sbjct: 163 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEE 221 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + + ++D + E A + R Sbjct: 222 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 275 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V ++ A +L+RKM + P I + D N G ++ SN C+E Sbjct: 276 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 332 Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + CNL S+NL+ N F+ ++ A + + +D I EK Sbjct: 333 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKI 389 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ R +G+G + L Y S +A ++ A S ELA G Sbjct: 390 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVG 449 Query: 707 AYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 Y + + + + + + W ++ + + G RN+ Sbjct: 450 PYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQ 509 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 +APT TI + ++P + + K G +VN + L++ +E + Sbjct: 510 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 569 Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875 + + +G++ + + + ++ A I PM + + Q WI A S + Sbjct: 570 EAIVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 629 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + E + ++++ IY +AW +G+K R S K + K ++ Sbjct: 630 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKAEITEKSEETIR 689 Query: 935 THSLGIPS 942 + Sbjct: 690 AAVEKVVE 697 >gi|318059580|ref|ZP_07978303.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp. SA3_actG] gi|318075430|ref|ZP_07982762.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces sp. SA3_actF] Length = 959 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 130/668 (19%), Positives = 242/668 (36%), Gaps = 42/668 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L D + E Q F + E E L F Sbjct: 91 RETGLKQLID-RIVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSF 140 Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 141 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 200 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H DVE F++ + + Sbjct: 201 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEE 259 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + + ++D + E A + R Sbjct: 260 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 313 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V ++ A +L+RKM + P I + D N G ++ SN C+E Sbjct: 314 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 370 Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + CNL S+NL+ N F+ ++ A + + +D I EK Sbjct: 371 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKI 427 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ R +G+G + L Y S +A ++ A S ELA G Sbjct: 428 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVG 487 Query: 707 AYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 Y + + + + + + W ++ + + G RN+ Sbjct: 488 PYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQ 547 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 +APT TI + ++P + + K G +VN + L++ +E + Sbjct: 548 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 607 Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875 + + +G++ + + + ++ A I PM + + Q WI A S + Sbjct: 608 EAIVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 667 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + E + ++++ IY +AW +G+K R S K + K+ ++ Sbjct: 668 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKVEITEKSEETIR 727 Query: 935 THSLGIPS 942 + Sbjct: 728 AAVEKVVE 735 >gi|302522306|ref|ZP_07274648.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB78] gi|302431201|gb|EFL03017.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB78] Length = 965 Score = 305 bits (780), Expect = 3e-80, Method: Composition-based stats. Identities = 130/668 (19%), Positives = 241/668 (36%), Gaps = 42/668 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L D + E Q F + E E L F Sbjct: 97 RETGLKQLID-RIVKTYRKSGEENQYF---------ASPADAEIFEHELAYALLHQIFSF 146 Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 147 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 206 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H DVE F++ + + Sbjct: 207 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVENFIETKVKEEE 265 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + + ++D + E A + R Sbjct: 266 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 319 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V ++ A +L+RKM + P I + D N G ++ SN C+E Sbjct: 320 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 376 Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + CNL S+NL+ N F+ ++ A + + +D I EK Sbjct: 377 ---LDNTSCNLASLNLMKFLKDDGKGNQSFEVERFAKLVELVITAMDISICFADFPTEKI 433 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ R +G+G + L Y S +A ++ A S ELA G Sbjct: 434 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRSLAGAITSLMTGTAYRRSAELAAVVG 493 Query: 707 AYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 Y + + + + + + W ++ + + G RN+ Sbjct: 494 PYEGYARNATAHKRVMKQHADANGVAVRIDDLDTPVWAAATEAWQDVLRVGEKNGFRNAQ 553 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 +APT TI + ++P + + K G +VN + L++ +E + Sbjct: 554 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 613 Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875 + + +G++ + + + ++ A I PM + + Q WI A S + Sbjct: 614 EAIVAHIAENGNVVDAPALKPEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 673 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + E + ++++ IY +AW +G+K R S K + K ++ Sbjct: 674 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKAEITEKSEETIR 733 Query: 935 THSLGIPS 942 + Sbjct: 734 AAVEKVVE 741 >gi|240849860|ref|YP_002971248.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella grahamii as4aup] gi|240266983|gb|ACS50571.1| ribonucleoside-diphosphate reductase subunit alpha [Bartonella grahamii as4aup] Length = 716 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 175/694 (25%), Positives = 288/694 (41%), Gaps = 76/694 (10%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ ++ + + + +D ++ K F F +LG Sbjct: 48 LQHVNQNTVFFHNLKEKIDYLIEEGYYEKVLFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + RV + + A F + + + F +TP Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGNKALAESFVDEIITGRFQPATP 164 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL V D++ I ++ L+K GG+ T +R GA I Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIK 224 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GV+P +K+ D+ NQ G R+GA YL H+D+ +FLD ++ D++ R Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFS D+ + GK F ++ K Sbjct: 285 IKTLSLGVVIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAK 341 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + +KISA ++ + + FE+G+P+I F+D N G + SNLC+EI S + Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTANR--SNPIAGRISMSNLCSEILQVSEA 399 Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 E CNLGS+N+ + T+ +AVR L V D+ N Sbjct: 400 SELETDLTYRTIGSDISCNLGSMNIAKAMESP-----DFGQTVESAVRALTAVSDMSNIA 454 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + K N AIGLG M L I Y SPEA++ + +++HAI AS + Sbjct: 455 CVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRASNLI 514 Query: 702 AQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752 A+E + +S F+ S + G F I + + L +R W ELKK Sbjct: 515 ARERQEMFSGFEKSAYADGRFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKL 574 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811 V G+ N N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 575 VIEYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 632 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + A+EI P +I++ + + +DQ Sbjct: 633 -----------------------------NLNFYQDAYEIGPEKIIDTYAAATQHVDQGL 663 Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 SL L+ + + + ++ AW G+K+ YY+R Sbjct: 664 SLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVR 697 >gi|218709885|ref|YP_002417506.1| ribonucleotide reductase r1 chain [Vibrio splendidus LGP32] gi|218322904|emb|CAV19081.1| ribonucleotide reductase R1 chain [Vibrio splendidus LGP32] Length = 710 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 177/714 (24%), Positives = 295/714 (41%), Gaps = 83/714 (11%) Query: 220 TARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDL 278 AR + + + +K + + Y + +Y + + F Sbjct: 36 AARQFFLQHVNQNTVFFHNLDEKIDYLLREGYYEAQVIEQYDRSFLHQIWANAYQAKFRF 95 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 K+ F L+ +E + RV M L + Sbjct: 96 RTFLGAYKF-----FTSYALKT-------RDGKRYLERFED---RVVMTALLLARGDCEF 140 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A+ + F +TPT NSG + +L SCFL + D++ I A+ + L++ Sbjct: 141 ALALMEEIIHQRFQPATPTFINSGKKSRGELISCFLLRIEDNMESIGRAINSSLQLSRRG 200 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ T +R GA I G +S GV+P +K+ D+ NQ G R+GA YL H Sbjct: 201 GGVALLLTNLREQGAPIKGILNQSSGVVPVMKLLEDSFSYANQLGSRQGAGAVYLNVHHP 260 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ +FLD ++ D++ R ++ IPD+ ++ QN LFSP +V +YG Sbjct: 261 DIMQFLDTKRENADEKIRIKTLSLGVVIPDITLELAKQNKDMYLFSPHDV---ERVYGVP 317 Query: 518 FEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + + ++ + K+SA L++ + + FE+G+P+I F+D N +P Q Sbjct: 318 FSEISVTEKYHEMVDDPRIRKGKMSARGLFQTLAEIQFESGYPYIMFEDTVNQANPIQ-- 375 Query: 577 GVVHSSNLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLAST 624 G V+ SNLC+EI S CNLGS+N+ D +L+ T Sbjct: 376 GRVNMSNLCSEILQVNEASNYDDDLNYSHVGRDISCNLGSVNIAKA-----LDGGQLSQT 430 Query: 625 IRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + TA+R L+ V +++ +++ +K N AIGLG M L I Y SPEA++ Sbjct: 431 VDTAIRALNAVSEMSAINSVPSIRKGNDESHAIGLGQMNLHGFLARERIHYDSPEAIDFT 490 Query: 684 DESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTS 742 + +H + AS +LAQE+ + F+ S + G F + + ++ + S Sbjct: 491 SSYFACVLYHCLVASNKLAQEKKSTFKGFEDSSYSDGSFFDKYLQQDFSPKLDVVQDLFS 550 Query: 743 RLP--------WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 RL W ELK+ V + G+ N AI PT +I+ I + SI P + ++ Sbjct: 551 RLDIRIPTVSEWSELKQLVMSSGLYNRYLQAIPPTGSISYINDSTASIHPVTAKVEIRKE 610 Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G +L N + AF I P Sbjct: 611 GKIGRVYFPAPYLNN-------------------------------SNLEYFRDAFSIGP 639 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +I+ + + +DQ SL L+ D+ + + ++ AW +KT YY+R R Sbjct: 640 KAIIDVYAAATEHVDQGLSLTLFFDDEVTTRGINKAQIYAWKKKIKTLYYIRMR 693 >gi|251788643|ref|YP_003003364.1| ribonucleoside-diphosphate reductase subunit alpha [Dickeya zeae Ech1591] gi|247537264|gb|ACT05885.1| ribonucleoside-diphosphate reductase, alpha subunit [Dickeya zeae Ech1591] Length = 715 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 176/681 (25%), Positives = 281/681 (41%), Gaps = 72/681 (10%) Query: 254 EYFCRYIEEGVKARLLHESMM-DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E +EG + E DF + +++ R +LG Y Y L Sbjct: 62 EKLRWLQQEGYYEPEVLERYQSDFIIDVFQRAVEH-RSPFQSFLGAFKFYTSYALKSFDG 120 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 + RV M + A + + + S F +TPT N G R +L SC Sbjct: 121 SQYLENYG-ERVCMVALTLARGDAQLAQQLVDEMMSGRFQPATPTFLNCGKRQRGELVSC 179 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ T +R GA I +S GVIP +K+ Sbjct: 180 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFMLTNIRETGAPIKRIENQSSGVIPIMKML 239 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD R+ D++ R ++ IPD+ + Sbjct: 240 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTRRENADEKIRIKTLSLGVVIPDITLH 299 Query: 492 RVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 N LFSP +V ++ L Y + + EI+ I+A ++ + Sbjct: 300 LARNNQDMHLFSPYDVERIYGMPLSEISVSEKY---DELVNHPEIRKC-AINARQFFQTL 355 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------ 597 + FE+G+P++ F+D N +P G + SNLC+EI S + E Sbjct: 356 AELQFESGYPYLMFEDTVNGNNPV--AGRITMSNLCSEILQVSRASEYQEDLSYRLVGKD 413 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D LA ++ AVR L V D+ + + + N AI Sbjct: 414 ISCNLGSLNIAKV-----MDGGNLAHSVAIAVRALTAVSDMSHINAVPSIAAGNAESHAI 468 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715 GLG M L I Y S EA++ + +++HA+ S LAQE ++ F S Sbjct: 469 GLGQMNLHGYLAREGILYGSEEALDFTNLYFYTVTYHALLTSSLLAQERNQTFAGFADSQ 528 Query: 716 WDQGVFP-----IDSIGLLAEVRDELAMNRTS---RLPWDELKKRVKTIGMRNSNCMAIA 767 + GVF + VR+ + + R W LK+RV G+ N N A+ Sbjct: 529 YASGVFFDRYLSQEWQPATERVRELFMVAGIALPLREDWLALKRRVMRYGLYNQNLQAVP 588 Query: 768 PTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 589 PTGSISYINHATASIHPIVSRIEIRKEGRLGRVYYPAPYMTND----------------- 631 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 ++ + A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 632 --------------NQRFYQDAYEIGPEKIIDTYAIATRHVDQGLSLTLFFPDTATTRDI 677 Query: 886 DFIYRQAWLMGLKTTYYLRSR 906 + AW G+KT YY+R R Sbjct: 678 NKAQIYAWKKGIKTLYYIRVR 698 >gi|149369594|ref|ZP_01889446.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified eubacterium SCB49] gi|149357021|gb|EDM45576.1| ribonucleotide-diphosphate reductase alpha subunit [unidentified eubacterium SCB49] Length = 596 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 158/625 (25%), Positives = 249/625 (39%), Gaps = 119/625 (19%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 P+ VA A +FY +S + ++P N G + SCF + Sbjct: 62 SPEQRIREVAERAEEILGMP-GYADKFYGYMSEGFYSLASPVWSNFGKKRGLPISCFGSH 120 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + DD+ I E M++K GG + +R GA I NG++ G + +++ Sbjct: 121 IDDDIGNILYTQSEVGMMSKLGGGTSGFFGKIRPRGAAI-TNNGEASGAVHIMRLFESMV 179 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+QG R+G YL H D++EFL++ + ++ + + +M+ + Sbjct: 180 DVVSQGSVRRGRFSPYLPIDHADIKEFLEIG----SEGNPIQELTHGVTVTNEWMEEMIA 235 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 R I W K+L E Sbjct: 236 GDE-------------------------------------EKRTI-----WAKVLQSRGE 253 Query: 556 TGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 G+P++ F D N Q +H+SNLCTEI L S + VC L SIN+L Sbjct: 254 MGYPYVFFTDNANNGAADVYQDKNHKIHASNLCTEIMLPSDHNWSFVCVLSSINVL---- 309 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKS------------------NHTHR 654 +D K + T V LD VI +E K S +R Sbjct: 310 --HYDKWKDTDAVETMVYFLDAVITEFLEKLESYKNSEDREDRQTFLFMERAYNFAKENR 367 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 A+GLG++G+ S L + S EA + E + I + AS ELA+ G KG Sbjct: 368 ALGLGVLGWHSLLQSKKHAFNSQEAFNLNSEIFKIIKDKSYKASEELAKAFGEPEVLKG- 426 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 G RN+ A+APT + A Sbjct: 427 -----------------------------------------YGRRNATLNAVAPTTSSAF 445 Query: 775 ICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I G VSQ I+P + N+YVK T+ N FLV L+++ + + D++ DGS+ + Sbjct: 446 ILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLVELLQEKGMDTREVWLDIRDKDGSVQH 505 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQA 892 ++ + ++ K + T EID M +I A+ RQ IDQ QS+N+ + + K+++ ++ A Sbjct: 506 LDFLTENEKDVFKTYSEIDQMDIIYQAANRQNHIDQGQSVNIIVHPDMPTKEVNKLHITA 565 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLK 917 W +GLK+ YY S +A K Sbjct: 566 WKLGLKSLYYQHSMNAAQKFKQKKD 590 >gi|227548645|ref|ZP_03978694.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] gi|227079259|gb|EEI17222.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] Length = 721 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 167/726 (23%), Positives = 295/726 (40%), Gaps = 89/726 (12%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG---------VKARLLHESMMD 275 L+ L +Y + + + + +YF +++ + L+ + + Sbjct: 20 LDYHALNALLNLYDENGEIQFEKDREAANQYFIQHVNQNTVFFHDLEEKIDYLVKNNYYE 79 Query: 276 ------FDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRV 324 +D ++ + K + F + Y Y +G R E + RV Sbjct: 80 PEVIDAYDWQFVKDTFKRAYSYKFRFQSFLGAYKYYTSYTLKTFDGRRYLERFED---RV 136 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGI 383 +M + E+ A + + + F +TPT N+G +L SCFL + D++ I Sbjct: 137 SMTALFLASGNEETASALVDEIMTGRFQPATPTFLNAGKAQRGELVSCFLLRIEDNMESI 196 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ + L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G Sbjct: 197 GRAINSSLQLSKRGGGVALLLSNIREAGAPIKHIENQSSGVIPVMKLLEDSFSYANQLGA 256 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ IPD+ + +N LFS Sbjct: 257 RQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKRNDDMYLFS 316 Query: 504 PDEVSDLHDLYGKEFEIA--YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 P D+ +YG F E YE + I+ + I+A ++ + + FE+G+P+I Sbjct: 317 P---YDVERVYGLPFADISVTEKYEEMVEDPRIRKTK-INARHFFQTIAEIQFESGYPYI 372 Query: 562 TFKD-----------PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 F+D N+ + + V+S ++ E + CNLGS+N+ Sbjct: 373 MFEDTANRANPVKTGRINMSNLCSEILQVNSPSVLNEDLSYAEVGHDISCNLGSLNIAKT 432 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 D D + T+ TA+R L V D + ++ + N+ AIGLG M L Sbjct: 433 M-----DSDNFSRTVETAIRGLTAVADKTSIESVPPVRDGNNASHAIGLGQMNLHGYLGR 487 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PI 723 HI Y S E ++ + + + AI AS +A E+ ++ F S + G F P Sbjct: 488 EHIEYGSEEGLDFTNAYFAAVMYEAIKASHAIAVEKGERFADFDKSEYATGEFFDRYDPA 547 Query: 724 DSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D +V++ A + + W +LK V G+ N A+ PT +I+ I + Sbjct: 548 DFQPKTDKVKELFARSSVAVPTAQQWAQLKADVARDGIYNRYLQAVPPTGSISYINNSTS 607 Query: 781 SIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 SI P + ++ G + N Sbjct: 608 SIHPIASKIEIRKEGKIGRVYYPAPHMDN------------------------------- 636 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898 + A+EI +I++ + K++DQ SL L+ + + + ++ AW G+K Sbjct: 637 ENLSYFKDAYEIGYEKIIDTYAVATKYVDQGLSLTLFFKDTITTRDINRAQIYAWRKGIK 696 Query: 899 TTYYLR 904 + YY+R Sbjct: 697 SLYYIR 702 >gi|49473849|ref|YP_031891.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella quintana str. Toulouse] gi|49239352|emb|CAF25685.1| Ribonucleotide reductase alpha-chain [Bartonella quintana str. Toulouse] Length = 716 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 176/694 (25%), Positives = 292/694 (42%), Gaps = 76/694 (10%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ ++ +++ + +D ++ K F F +LG Sbjct: 48 LQHVNQNTVFFHNLKEKIDYLIEEGYYEKTLFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + VA+ LA + A F + + + F +TP Sbjct: 108 FKYYTSYTLKTFDGKRYLERYEDRICLVALYLAQG---NKSLAESFVDEIITGRFQPATP 164 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL + D++ I ++ L+K GG+ T +R GA I Sbjct: 165 TFLNAGKKQRGELVSCFLLRIEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIK 224 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GV+P +K+ D+ NQ G R+GA YL H+D+ +FLD ++ D++ R Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFSP D+ + GK F ++ K Sbjct: 285 IKTLSLGVVIPDITFELAQNNEDMYLFSP---YDIERVTGKPFSDISLTEHYRSFVDNAK 341 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + +KI+A ++ + + FE+G+P+I F+D N +P G + SNLC+EI S + Sbjct: 342 IRKKKINARVFFQTLAEIQFESGYPYILFEDTANRANPI--AGRISMSNLCSEILQVSEA 399 Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 E CNLGS+N+ + T+ AVR L V D+ N Sbjct: 400 SELETDLTYRTIGSDISCNLGSMNIAKAMESTN-----FGRTVEIAVRALTAVSDMSNIA 454 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + K N AIGLG M L I Y S EA++ + +++HAI AS + Sbjct: 455 CVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSLEAIDFTNIYFYTVAYHAIRASNLI 514 Query: 702 AQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752 A+ER ++ F+ S + G F I + + L +R W ELKK Sbjct: 515 ARERQKVFAGFEKSAYADGSFFTKYIEKEWKPQCVLVQELFARNNIVIPDQKDWQELKKL 574 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811 V G+ N N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 575 VIEYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 632 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + A+EI P +I++ + + +DQ Sbjct: 633 -----------------------------NLNFYQDAYEIGPEKIIDTYAVATQHVDQGL 663 Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 SL L+ + + + ++ AW G+K+ YY+R Sbjct: 664 SLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVR 697 >gi|241764581|ref|ZP_04762598.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax delafieldii 2AN] gi|241365984|gb|EER60605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidovorax delafieldii 2AN] Length = 829 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 139/645 (21%), Positives = 243/645 (37%), Gaps = 87/645 (13%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK-EKRAVEFYNLLSSFHFMC 353 + L +L ++Y + + + RVA LA E K ++ E + + Sbjct: 33 PISLDVLREKYLKPGETNV----EDLYRRVAHALASVEAPKLRQKYEELFLANLHAGAIG 88 Query: 354 STPTLFNSGTRHP-QLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 + + +GT L +CF+ V D + G I+ AL+E A + GG+G D+ Sbjct: 89 AGRIMSAAGTDIQATLINCFVQPVGDCIQGVDDEGFPGIYEALREAAETMRRGGGVGYDF 148 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + T + G ++ V + + V G R+GA L H DV+EF+ Sbjct: 149 SRIRPKGAQVKATASVASGPCSYMNVFDQSCSTVESAGARRGAQMGVLRIDHPDVQEFIT 208 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 ++ G R ++ N + + D F++ V + W L G Sbjct: 209 AKRTPG----RWNNFNVSVGVSDAFIEAVQHDRPWELVHRARPGTAAMAQG--------- 255 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 V+ + A ALW ++ ++ P I F D N + + + ++N Sbjct: 256 --AHQRADGQWVYATVQARALWDIIMKSAYDFAEPGILFLDHINEDNNLNYCEAIAATNP 313 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVLDNVID 637 C E L S C+LG + L + FD++ + VR LDNV+D Sbjct: 314 CGEQPLPSY----GCCDLGPVILTRFVRHPFGFDGLPSFDFEAFEKVVALQVRALDNVLD 369 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + + + R IG+G G + L +L + Y E +A E + A A Sbjct: 370 VTFWPLPQQRDEAMAKRRIGVGFTGMGNTLAMLCLRYDMQEGRAMAARIAEAMRDAAYRA 429 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 SVELA+E+GA+ F+ + LA + + +K+ ++ G Sbjct: 430 SVELAREKGAFPKFEAEPY-------------------LAAGTFASRLPESIKEAIRANG 470 Query: 758 MRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM----SGDFTVVNSFLVNELK 811 +RNS+ ++IAPT T++ S I+P + +Y + S V + Sbjct: 471 IRNSHLLSIAPTGTVSLAFADNASNGIEPPFSWMYKRKKREADGSTSEYSVEDHAWRLYR 530 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + G + + +A E+ I Q ++D A Sbjct: 531 ELG--------------GDVNALP-------DYFISALEMPAEGHIAMMEAVQPFVDTAI 569 Query: 872 SLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 S + + + + +Y QAW LK R S T Sbjct: 570 SKTVNIPADYPYEDFKDLYLQAWRARLKGLATYRPNSILGSVLET 614 >gi|302542052|ref|ZP_07294394.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces hygroscopicus ATCC 53653] gi|302459670|gb|EFL22763.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces himastatinicus ATCC 53653] Length = 954 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 122/630 (19%), Positives = 232/630 (36%), Gaps = 32/630 (5%) Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383 A G + E E L F ++P FN GT + Q+S+CF+ +V D + I Sbjct: 112 ANGYFASPADAEIFDHELTYALLHQVFSFNSPVWFNVGTKQPQQVSACFILSVDDSMESI 171 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-G 442 +E M+ K G G + + +R + G + G + F++ A+ +A + G Sbjct: 172 LDWYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGA 230 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+ A L+ H DVE F++ + + R D + + V Sbjct: 231 TRRAAKMVVLDVDHPDVEAFIETKVKEEEKVRALRDAGFDMDLGGDDITSVQYQNANNSV 290 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 ++ G +F + + +I A +L+RKM + P I Sbjct: 291 RVNDTFMKAVESGSQFGLRSRMT--------GEPIEEIDAKSLFRKMAEAAWACADPGIQ 342 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFD 617 + D N G + +SN C+E + + CNL S+NL+ N +FD Sbjct: 343 YDDTINHWHTSPETGRITASNPCSEYMH----LDNSSCNLASLNLMKFLEDDDAGNQRFD 398 Query: 618 YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASP 677 ++ A + + +D I +K ++ R +G+G + L Y S Sbjct: 399 AERFAKVVELVITAMDISICFADFPTQKIGETTRAFRQLGIGYANLGALLMATGHAYDSD 458 Query: 678 EAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS--IGLLAEVRDE 735 +A ++ + S ELA G Y + + +A+ D+ Sbjct: 459 GGRALAGAITSLMTGTSYKRSAELAGVVGPYDGYARNADAHNRVMKQHSDANAIAKRVDD 518 Query: 736 LA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YV 791 L + + W ++ + + G RN+ +APT TI + + ++P + + Sbjct: 519 LDSPVWAAATEAWQDVLRLGEKSGFRNAQASVLAPTGTIGLMMDCDTTGVEPDLALVKFK 578 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF 849 K G +VN+ + LK+ E + + + G++ + + + ++ A Sbjct: 579 KLVGGGSMQIVNNTVPKALKRLGYQPEQVEAIVAHIAEHGNVIDAPGLKLEHYEVFDCAM 638 Query: 850 ---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRS 905 I PM + + Q ++ A S + + E + ++++ IY + W +GLK R Sbjct: 639 GERSISPMGHVRMMAAAQPFLSGAISKTVNMSESATVEEIEEIYFEGWKLGLKALAIYRD 698 Query: 906 RSATSVEKSTLKGVDGKLNAVPVTDPNSST 935 S K + Sbjct: 699 NCKVGQPLSAKKKEEKAAEQAEPEVEKVVE 728 >gi|83594588|ref|YP_428340.1| ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC 11170] gi|83577502|gb|ABC24053.1| Ribonucleotide reductase large subunit [Rhodospirillum rubrum ATCC 11170] Length = 786 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 155/659 (23%), Positives = 264/659 (40%), Gaps = 76/659 (11%) Query: 302 YDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360 + +GS +E P+ F RV G+ ++ + + + + Sbjct: 13 EKYRLVDPDGSSLEQGPEDSFARVCRGIYARDPRRAVHEPLALEAMKALEWCPGGRIHAG 72 Query: 361 SGTRHP-QLSSCF-LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF VPD + GI AL A+ + GG+G D++ +R GA + T Sbjct: 73 AGTDRRVTLINCFVNMIVPDRMDGIMEALTRAALTMQQGGGIGTDFSTLRPRGAKVRRTG 132 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 S G + F+++ + + GG R+GA+ + H D+ F+ + G R + Sbjct: 133 SVSSGPLSFMEIWHAMCGTIMSGGARRGAMMGTMICDHPDLPAFITAKAQAG----RLTN 188 Query: 479 MNTANWIPDLFMKRVTQNAGW---TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 N + + D FM+ V ++A W P + + L + + E Y Sbjct: 189 FNVSVLVTDAFMRAVDEDATWDLGFSVPPADPARLVAVTERNGEPWY------------- 235 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 V+ ++SA ALW K++ ++ P + F D N R+ + + +N C E L + + Sbjct: 236 VYERLSARALWEKIIRTTYDHAEPGVIFIDRVNERNNLAYCETISCTNPCGEQPLPPNGD 295 Query: 596 ETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 CNLG +NL + FD +LA VR LDNV+D++ +E K Sbjct: 296 ----CNLGCVNLAVLVRDPFTPQARFDDARLAEVAAIGVRFLDNVLDVSNFPVEDQAKEA 351 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 R +GLG+MG +AL +L + Y SP A+ M + A AS ELA ERG + Sbjct: 352 QAKRRLGLGIMGLGNALQMLGLRYGSPAAIAETRRIMALLRDAAYRASAELAGERGPFPL 411 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 + RD+L + D+L+ ++ G+RN + IAPT Sbjct: 412 Y--------------------DRDQLLARPFIQELPDDLRAKIAEQGLRNGVMLTIAPTG 451 Query: 771 TIAN-ICGVSQSIDPSYQNLYVKSNM---SG--DFTVVNSFLVNELKQRDLWDEAMISDL 824 T A VS ++P++ Y + + G +F V+++ + + R L Sbjct: 452 TTAIYYNNVSSGLEPTFGWRYFRKVLRPDGGHDEFAVIDAGFESWCRTRGLDPAT----- 506 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + +PD + TA E+ + + Q++ID + S + + S Sbjct: 507 -------APLTGLPDSM----VTALELSVEDHLRMQAACQEFIDASISKTINCPADMSYD 555 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 +Y+ A+ MG K R S T +L V + P Sbjct: 556 SFAAVYKLAYEMGCKGCTTYRP-SGTRGSVLSLDATTPAAAPVQKAPAPRTPAPPMRPE 613 >gi|295836140|ref|ZP_06823073.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB74] gi|197695235|gb|EDY42168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. SPB74] Length = 964 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 131/668 (19%), Positives = 241/668 (36%), Gaps = 42/668 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L D + E Q F + E E + L F Sbjct: 97 RETGLKQLID-RIVKTYRKAGEDNQYF---------ASPADAEIFEHELAHALLHQIFSF 146 Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 147 NSPVWFNVGTPQPQQVSACFILSVDDSMESILNWYKEEGMIFKGGSGAGLNLSRIRSSKE 206 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H DVE F++ + + Sbjct: 207 LLTS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDVEGFIETKVKEEE 265 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + + ++D + E A + R Sbjct: 266 KIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDEFMTAVETAGKFGLRSRLT 319 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 GE V ++ A +L+RKM + P I + D N G ++ SN C+E Sbjct: 320 GE--VIEEVEAKSLFRKMAEAAWACADPGIQYDDTINNWHTCPESGRINGSNPCSEYMH- 376 Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + CNL S+NL+ N F+ ++ A + + +D I EK Sbjct: 377 ---LDNTSCNLASLNLMKFLKDDGNGNQSFEAERFAKLVELVITAMDISICFADFPTEKI 433 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ R +G+G + L Y S +A ++ A S ELA G Sbjct: 434 GENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAISSLMTGTAYRRSAELAAVVG 493 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762 Y F + ++ + W ++ + + G RN+ Sbjct: 494 PYEGFARNATAHKRVMKQHADANGAAVRMDDLDTPVWAAATEAWQDVLRLGEKNGFRNAQ 553 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 +APT TI + ++P + + K G +VN + L++ +E + Sbjct: 554 ASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQI 613 Query: 821 ISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNL 875 + + +G++ + + + ++ A I PM + + Q WI A S + Sbjct: 614 EAIVAHIAENGNVVDAPALKTEHYEVFDCAMGDRAISPMGHVRMMAAIQPWISGAISKTV 673 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 + E + ++++ IY +AW +G+K R S K + K ++ Sbjct: 674 NMPESATVEEVEEIYFEAWKLGIKALAIYRDNCKVGQPLSAKKKEEKKTEIAEKSEETIC 733 Query: 935 THSLGIPS 942 + Sbjct: 734 AAVEKVVE 741 >gi|296316021|ref|YP_003662485.1| ribonucleotide reductase subunit 1 [Bovine herpesvirus 5] gi|40456144|gb|AAR86122.1| UL39 ribonucleotide reductase large subunit [Bovine herpesvirus 5] Length = 800 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 156/654 (23%), Positives = 264/654 (40%), Gaps = 59/654 (9%) Query: 302 YDRYFLHINGSRIEMPQAFFMRVAMGLALK-------------ETEKEKRAVEFY-NLLS 347 + Y + G +E FF+R+A A E Y L Sbjct: 155 EEMYLAKLEGGALESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAVFNAYLTALY 214 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP + +G L+SC+L V + E A + GG+G + Sbjct: 215 RQLVVPATPIMLFAGRARGSLASCYLLNPQVTSSTEAVEAITTEVARILLNRGGIGISFQ 274 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 L + G++ LK+ + A+A+N +R +C Y+E WH DV L++ Sbjct: 275 SFNRLASRDCKR-----GIMGALKLLDSMAMAINSDSERPTGICVYIEPWHCDVRAVLNM 329 Query: 466 R-KNTGDDRRRTHDMNTANWIPDLFMKRVTQ-----NAGWTLFSPDEVSDLHDLYGKEFE 519 R D+ R ++ + W+PDL R D S L L+G F Sbjct: 330 RGMLARDESTRCDNLFSCLWVPDLLFDRYLAYLEGCEGVVWTLFDDRASHLSRLHGPAFA 389 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV- 578 YE ER E + L ++ + TG P++ FKD CN G Sbjct: 390 AEYERLER-----EGLGVEAVPVQDLAFLVVRSIVMTGSPFVMFKDACNRHYHMDTAGDA 444 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLD 633 + SNLCTEI + + VCNL S+NL + FD+ L++ TA ++ Sbjct: 445 LTGSNLCTEIVQRADPDAHGVCNLASVNLPRCVREGEGGALAFDFAALSTAAATAAIFVN 504 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 ++ + E+A + HR++G+G G + L L + SP A + E E + Sbjct: 505 AMMLGGQYPTERAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAARRLNVEIAERLLLA 564 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 ++ S L + + F S + +G+ P D + + W L+++ Sbjct: 565 VMATSATLCEYGCAPFEDFARSKFARGLMPFD---------GYEGVVLSLPRAWARLREK 615 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V G+ N+ +A+ PT + + + S+ P + N++ K MSG+ N L+ L++ Sbjct: 616 VARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLPLMRALRK 675 Query: 813 RDLWDEAM---ISDLKYHDGSIGNI--ERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + L S+ + P TAFE D LI+ + R ++ Sbjct: 676 HFTREASRLGAVRALDREQWSVAAALGDLAPGHPLAKFKTAFEYDQERLIDLCADRAPFV 735 Query: 868 DQAQSLNLYLDEP-----SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKST 915 DQ+QS++L++ EP ++ + A+ GLKT YY + R AT+ T Sbjct: 736 DQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNNGVFT 789 >gi|163786627|ref|ZP_02181075.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Flavobacteriales bacterium ALC-1] gi|159878487|gb|EDP72543.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Flavobacteriales bacterium ALC-1] Length = 599 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 158/648 (24%), Positives = 259/648 (39%), Gaps = 124/648 (19%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + L Y P+ +A A +FY ++ ++ Sbjct: 47 LTDHSRKFLSSGYLTEDT-----TPEERIREIANNAEKILNIP-GFADKFYGYMAEGYYS 100 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P N G + SCF + + DD+ I E M++K GG + +R GA Sbjct: 101 LASPVWSNFGKKRGLPISCFGSHISDDMGDILYTQSEVGMMSKLGGGTSGYFGKLRHRGA 160 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + NG+S G + +++ V+QG R+G YL H D+ EFL++ + Sbjct: 161 PVKN-NGESSGAVHIMQLFEKMVDVVSQGSVRRGRFSPYLPIEHNDINEFLEIGT----E 215 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ + + +M+ + E Sbjct: 216 GNPIQELTHGVTVGNEWMQEMIDGDT--------------------EKR----------- 244 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS---PQQHVGVVHSSNLCTEIT 589 A+W K+L E G+P+I FKD N + Q++ +++SNLC+EI Sbjct: 245 -----------AIWAKVLQRRGEIGYPYIFFKDNANNTAPEVYQENKHEIYASNLCSEIM 293 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------------ 637 L ++ + VC L SINLL +D K + T V LD V++ Sbjct: 294 LPTNDRWSFVCVLSSINLL------HYDKWKDTDAVETMVYFLDAVLEEFVTKLEVYRDS 347 Query: 638 ------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 +EKA +RA+G+G +G+ S L +P+ S EA + E + I Sbjct: 348 PDRDDRQTFMFMEKAYNFAKENRALGMGALGWHSLLQSKMLPFDSAEAFNLNSEIFKTIK 407 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 ++ AS ELA++ G KG Sbjct: 408 EKSVKASEELAEKFGEPEVMKG-------------------------------------- 429 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G RN+ A+APT + A I G VSQ I+P + N YVK T+ N FL L Sbjct: 430 ----YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNSYVKDIAKIKTTIKNPFLKALL 485 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 K++ + + ++ +DGS+ ++E + + K + T EID M +I A+ RQ IDQ Sbjct: 486 KEKGMDTVEIWKSIRDYDGSVQHLEGLTELEKDVFKTYSEIDQMTIIYQAANRQNHIDQG 545 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 QSLN+ + + K ++ +Y AW +G+K+ YY S +A K + Sbjct: 546 QSLNIMVHPDMPVKDINKLYVTAWQLGVKSLYYQHSMNAAQKFKQKKE 593 >gi|54026278|ref|YP_120520.1| ribonucleotide-diphosphate reductase subunit alpha [Nocardia farcinica IFM 10152] gi|54017786|dbj|BAD59156.1| putative ribonucleoside-diphosphate reductase alpha subunit [Nocardia farcinica IFM 10152] Length = 1102 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 146/561 (26%), Positives = 239/561 (42%), Gaps = 66/561 (11%) Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 +CFL + D++ I ++ L+K GG+ + +R GA I +S GVIP + Sbjct: 564 HNCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREHGAPIKKIENQSSGVIPIM 623 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 624 KLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDI 683 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWR 547 + +N LFSP D+ +YGK F + + ++ + KI A ++ Sbjct: 684 TFELAKKNEDMYLFSP---YDVERIYGKPFADIDVTEKYYEMVDDKRIRKSKIKAREFFQ 740 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET---------- 597 + + FE+G+P+I F+D N +P G + SNLC+EI S+ E Sbjct: 741 TIAELQFESGYPYIMFEDTVNRANPI--AGKITHSNLCSEILQVSTPSEFNDDLSYAKVG 798 Query: 598 --AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHR 654 CNLGS+N+ D A TI A+R L V D + ++ ++ N Sbjct: 799 KDISCNLGSLNIAKA-----MDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNQQSH 853 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKG 713 AIGLG M L I Y S E ++ + + +HA+ AS LA ERG Y F Sbjct: 854 AIGLGQMNLHGYLARERIHYGSDEGIDFTNMYFYTVVYHALRASNRLAIERGTYFGGFPE 913 Query: 714 SLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 S + G + + E + + + ++ W ELK V G+ N N A Sbjct: 914 SKYASGEYFDKYTEQVWEPKTERVRQLFADAGVRIPTQDDWRELKASVMEHGIYNQNLQA 973 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDL 824 + PT +I+ I + SI P + ++ G ++ N+ Sbjct: 974 VPPTGSISYINHSTSSIHPVASKIEIRKEGKIGRVYYPAPYMTND--------------- 1018 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGK 883 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 1019 ----------------NLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTR 1062 Query: 884 KLDFIYRQAWLMGLKTTYYLR 904 L+ AW G+KT YY+R Sbjct: 1063 DLNKAQIYAWRKGIKTLYYIR 1083 >gi|37525252|ref|NP_928596.1| ribonucleotide-diphosphate reductase subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784679|emb|CAE13579.1| ribonucleoside-diphosphate reductase alpha-chain (ribonucleotide reductase R1 subunit) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 709 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 165/668 (24%), Positives = 277/668 (41%), Gaps = 64/668 (9%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQ 318 +EG + E + L ++ +LG Y Y L N +E + Sbjct: 63 QEGYYEINVLEQYDFTVIKKLFQQAYSKKFRFQTFLGAFKYYTSYTLKTFDNKRYLERYE 122 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377 VA+ LA + A + + S F +TPT N G + +L SCFL + Sbjct: 123 DRVCMVALTLAQGDQ---MLACRLVDEMISGRFQPATPTFLNCGKKQRGELVSCFLLRIE 179 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 180 DNMESIGRSVNSALQLSKRGGGVAFLLSNLRETGAPIKMIQNQSSGVIPVMKMLEDAFSY 239 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ K N Sbjct: 240 ANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSIGVVIPDITFKLAKHNE 299 Query: 498 GWTLFSPDEVSDLHDLYG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 LFSP ++ ++ + Y + K I+A + + + FE Sbjct: 300 DMYLFSPYDIQRVYGVPMSEISMTEKYAEMVNNQQIRKSK----INAREFFMALAELQFE 355 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608 +G+P+I ++D N +P G ++ SNLC+EI +S+ E S NL Sbjct: 356 SGYPYIMYEDTVNNANPI--KGRINMSNLCSEILQVNSASEYEEDLSYHHIGKDISCNLG 413 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + + D +I TAVR L V D+ + ++ +K N AIGLG M L Sbjct: 414 SMNIAHTMDSPDFTLSIETAVRALTAVSDMSHIRSVPSIEKGNQDSHAIGLGQMNLHGYL 473 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSI 726 I Y S E ++ + +++HA+ S ++A ER +Y FK S + G F Sbjct: 474 AREKIHYGSEEGIDFTNIYFYIVTYHALRTSNQIAIERNSYFKGFKDSRYANGEFFNKYT 533 Query: 727 GLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + + ++ + ++ W ELK + G+ N N AIAPT +I+ I Sbjct: 534 EITWQPQTKKVSQLFEQAGIKIPNQQDWLELKASIMAHGIYNQNLQAIAPTGSISYINNS 593 Query: 779 SQSIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ + +G F+ N Sbjct: 594 TSSIHPIVSRIEIRKDGKTGRVYYPAPFMTN----------------------------- 624 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMG 896 + + + A+EI P +I++ + + +DQ SL L+ D+ + + ++ AW Sbjct: 625 --NNLEYYQDAYEIGPEKIIDTYAIATQHVDQGLSLTLFFKDDATTRDINKAQIYAWRKR 682 Query: 897 LKTTYYLR 904 +KT YY+R Sbjct: 683 IKTLYYIR 690 >gi|308516939|emb|CBW47044.1| hypothetical host-like ribonucleoside diphosphate reductase [Roseovarius sp. 217 phage 1] Length = 776 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 151/664 (22%), Positives = 261/664 (39%), Gaps = 87/664 (13%) Query: 299 QILYDRYFLHINGSRIEM---PQAFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349 QI +Y + E + R+A L E+E F+ L F Sbjct: 13 QIWNQKYRFKTDRDDFESDLSVVDTWGRIASACSNLPHLHNNHAEREALEQRFFQALYDF 72 Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + + +GT R+ L +C++ T+PD L GIF L+E A+ + GG+G D++ + Sbjct: 73 KLLPAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G S G + F+ V + + G R+GA+ A + H D+ EF+ ++ Sbjct: 133 RPKGAPVKGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMEFVHAKQ 192 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D R + N + D FM+ V + W L Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVANDEEWDLVF------------------------ 224 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 V+ I AV LW +L ++ P + F D N + + + ++N C E Sbjct: 225 -----NGVVYETIRAVELWNTILQNTYDYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279 Query: 588 ITLNSSSEETAVCNLGSINLLAH-----FANNQFDYDKLASTIRTAVRVLDNVIDINCHT 642 L C LGS+NL H D +L ++RT VR+LD+V+D + Sbjct: 280 QPLPPY----GACLLGSVNLAKHVFAPFTEQADVDMAELEKSVRTGVRLLDSVVDTSKFP 335 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + + +K R GLG+ G L + Y S +AV+ + M I+ A S+E+A Sbjct: 336 LPEQEKEAKEKRRAGLGVTGLADLLFMTGYRYGSVQAVDCTETIMMNIAIWAYEESIEMA 395 Query: 703 QERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 +E G + + E R + + + + ++ + G+RN++ Sbjct: 396 KEMGPAPCLQTT----------------EARMKFIQSGFMQRMPEYIRDDIIQWGIRNTH 439 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +++APT TI+ G S +P + + + + D T + ++D A++ Sbjct: 440 LLSVAPTGTISMYAGNVSSGGEPIFAPSFQRKVTNDDGT---------KRTETVYDYAIL 490 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 K+ + + + ATA +++P I + QKW+D + S + L E Sbjct: 491 LFEKHFG---EDTGAAQEWMDNYLATAQDLEPQDHIVMQAVLQKWVDSSISKTVNLPENI 547 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR----SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTH 936 S + +Y A+ G K R + S SVE K +N D Sbjct: 548 SFEDFKAVYDMAYETGCKGCTTYRPNDVTGSVLSVETKEEKPEPEIVNEEYDGDMRVVAR 607 Query: 937 SLGI 940 + Sbjct: 608 PHEV 611 >gi|257415188|ref|ZP_05592182.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis AR01/DG] gi|257157016|gb|EEU86976.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ARO1/DG] Length = 719 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDKQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N + ++R R L V D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|110642800|ref|YP_670530.1| ribonucleotide-diphosphate reductase subunit alpha [Escherichia coli 536] gi|110344392|gb|ABG70629.1| ribonucleoside-diphosphate reductase 2 alpha chain [Escherichia coli 536] Length = 701 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 175/673 (26%), Positives = 282/673 (41%), Gaps = 60/673 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 + + EG + ++ L +LG Y Y L +G Sbjct: 48 QRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHASGFRFQTFLGAWKFYTSYTLKTFDGK 107 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 R + F RV M E A + + + S F +TPT N G + +L SC Sbjct: 108 RY--LEDFADRVTMVALTLAQGDETLAAQLTDEMLSGRFQPATPTFLNCGKQQRGELVSC 165 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 166 FLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKML 225 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 226 EDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFH 285 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEI-AYENYERQADRGEIKVFRKISAVALWRKML 550 +NA LFSP D+ +YGK F A + E + ++A ++++ Sbjct: 286 LAKENAQMALFSP---YDVERVYGKPFADVAISERYDELVADERIRKKYLNARDFFQRLA 342 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLG 603 + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ E + Sbjct: 343 EIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDI 400 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + + D A T+ TAVR L V D+ + H++ + N AIGLG M Sbjct: 401 SCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSHIHSVPSIEAGNAASHAIGLGQMN 460 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 461 LHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFAGFKQSRYASGEY 520 Query: 722 PIDS----IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 EL +R W +L+ V G+ N N A+ PT +I+ Sbjct: 521 FSQYLQSNWQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSIS 580 Query: 774 NICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ +G F+ N Sbjct: 581 YINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTN------------------------ 616 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN-LYLDEPSGKKLDFIYRQ 891 + ++ A+EI +I++ + + +DQ SL L+LD + + +D Sbjct: 617 -------ENLALYQDAYEIGAEKIIDTYAETTRHVDQGLSLTLLFLDTATTRDIDKAQIY 669 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 670 AWRKGIKTLYYIR 682 >gi|315173868|gb|EFU17885.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1346] Length = 719 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N + ++R R L V D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMKYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|283778372|ref|YP_003369127.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pirellula staleyi DSM 6068] gi|283436825|gb|ADB15267.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pirellula staleyi DSM 6068] Length = 1041 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 124/578 (21%), Positives = 223/578 (38%), Gaps = 33/578 (5%) Query: 362 GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 +PQ S+CF+ +V D++ I AML K+ G G D + +R + G GK Sbjct: 186 PYEYPQGSACFIQSVDDNMEAIMRLATSEAMLFKFGSGTGTDLSTLRSHREKLSG-GGKP 244 Query: 422 QGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 G + F++V + A V GGK R+ A L+ WH D+ EF++ + + R+ H Sbjct: 245 SGPLSFMRVYDQIAAVVKSGGKTRRAAKMQSLKVWHPDILEFVECK---WKEERKAH--- 298 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK- 539 I + ++ +L EF A+E E+ A ++ Sbjct: 299 --VLIEKGGYEANFNGEAYSSILFQNA-NLSVRLTDEFMQAHEKNEKWATHWITDASKEG 355 Query: 540 --ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET 597 A L +M ++ G P + + N + G +++SN C+E + Sbjct: 356 PVYEARWLLNRMAECAWQCGDPGVQYDTTINKWHTCPNSGRINASNPCSEYMF----LDD 411 Query: 598 AVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 CNL SINL+ + F+ D+ + R + ++D + E+ +++H R + Sbjct: 412 TACNLSSINLMKFREADGSFNVDRFKTACRLFFIAQEILVDHASYPTEQIARNSHAFRPL 471 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 GLG S + +PY S A + + A AS E+A G + ++ + Sbjct: 472 GLGYSNLGSLIMSNGLPYDSEAAYGLCGSVTALLHGAANLASAEMAAVVGPFEGYEANRE 531 Query: 717 DQGVFPIDSIGLLAE--VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 + + + +R WD++ + G RN+ +APT TI+ Sbjct: 532 PFLRVMQMHRDAVEDINPAGPADLQEAARATWDQVLALGRRTGFRNAQATVLAPTGTISF 591 Query: 775 ICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGS 830 + + I+P + Y + G +VN + L + D + LKY + + Sbjct: 592 MMDCDTTGIEPDIALVKYKQLAGGGMLKIVNGTVPMALGKLGYDDPQIKGILKYVNENDT 651 Query: 831 IGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 I + D+ + AF I+ I + Q ++ A S + + + + Sbjct: 652 IEGAPELADEHLAVFDCAFKPANGVRSINWRAHIRMMAAAQPFLSGAISKTVNMPTDVTP 711 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 + Y W +GLK R S S +T Sbjct: 712 ADIGDAYTWGWQLGLKALAIYRDGSKQSQPLNTKNDAS 749 >gi|238784827|ref|ZP_04628828.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] gi|238714243|gb|EEQ06254.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia bercovieri ATCC 43970] Length = 693 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 167/711 (23%), Positives = 289/711 (40%), Gaps = 75/711 (10%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + IEE + + + Sbjct: 16 DRLAARQYFLQHVNQNTVFFHNLQEKLNY-------------LIEEEYYEKEVLDQYDFS 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + VA+ LA Sbjct: 63 FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 + A E + S F +TPT N G + +L SCFL + D++ I ++ L Sbjct: 120 NPQLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + + LFSP D+ + Sbjct: 240 AHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNSEDMYLFSP---YDVEQV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG + + + ++ + KI A ++ + + FE+G+P++ F+D N +P Sbjct: 297 YGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTVNRANP 356 Query: 573 QQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTI 625 G ++ SNLC+EI +S E + S NL + + D +I Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAHTMDSPDFGKSI 414 Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V D+ N ++ +K N AIGLG M L I Y S EA++ + Sbjct: 415 ETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735 + +HAI AS LA ER + F S + G + I + + + Sbjct: 475 IYFYTVVYHAIRASNLLAIERGCHFKGFDESAYASGSYFTKYIAQRWQPKTAKVEALFAD 534 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + + + W L++ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 535 VGITIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEG 594 Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ N+ + + A++I P Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGPE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTATTRDINRAQIYAWKRGIKTIYYIR 674 >gi|49475006|ref|YP_033047.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella henselae str. Houston-1] gi|49237811|emb|CAF27006.1| Ribonucleotide reductase alpha-chain [Bartonella henselae str. Houston-1] Length = 716 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 175/689 (25%), Positives = 291/689 (42%), Gaps = 66/689 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ ++ +++ + +D ++ K F F +LG Sbjct: 48 LQHVNQNTVFFHNLKEKIDYLIEEGYYEKALFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + VA+ LA + A F + + + F +TP Sbjct: 108 FKYYTSYTLKTFDGKRYLERYEDRICLVALYLAQG---NKALAESFVDEIITGRFQPATP 164 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL V D++ I ++ L+K GG+ T +R GA I Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSVNSALQLSKRGGGVALCLTNLREAGAPIK 224 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GV+P +K+ D+ NQ G R+GA YL H+D+ +FLD ++ D++ R Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFS D+ + GK F ++ K Sbjct: 285 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAK 341 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + +KISA ++ + + FE+G+P+I F+D N +P G ++ SNLC+EI + + Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNEA 399 Query: 595 EETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646 E S NL + D D T+ AVR L V D+ N + Sbjct: 400 SELEADLTYRTVGSDISCNLGSMNIAKAMDSDDFGRTVEAAVRALTAVSDMSNIACVPSI 459 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-R 705 K N AIGLG M L I Y SPEA++ + +++HAI S +A+E + Sbjct: 460 AKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTNIYFYIVAYHAIRVSNLIARERQ 519 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIG 757 + F+ S + G F I + + L +R W ELKK V G Sbjct: 520 KMFVGFEKSAYADGSFFAKYIEQEWKPQFSLVQELFARNNIVIPDQKDWQELKKLVIEYG 579 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816 + N N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 580 LYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 632 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 N++ + A+EI P +I++ + + +DQ SL L+ Sbjct: 633 ----------------NLDF--------YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLF 668 Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + ++ AW G+K+ YY+R Sbjct: 669 FPDTATTRDINRAQIYAWKKGIKSIYYVR 697 >gi|320008140|gb|ADW02990.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces flavogriseus ATCC 33331] Length = 967 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 124/645 (19%), Positives = 228/645 (35%), Gaps = 70/645 (10%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ V D + I +E M+ Sbjct: 127 EVFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 186 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 187 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 245 Query: 454 TWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWIPDLFMKRVT 494 H D+E F++ + + R + + N + + D FMK V Sbjct: 246 VDHPDIENFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMKAVE 305 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + L + V ++ A +L+RKM + Sbjct: 306 AGGKFGLRARMT---------------------------GDVIEEVEAKSLFRKMAEAAW 338 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612 P I + D N G ++ SN C+E + CNL S+NL+ Sbjct: 339 ACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDD 394 Query: 613 ---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N F+ ++ A + + +D I +K ++ +R +G+G + L Sbjct: 395 GLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGENTRAYRQLGIGYANLGALLMA 454 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIG 727 Y S +A ++ + S ELA G Y + + + + Sbjct: 455 TGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVGPYDGYARNAEPHQRVMKQHSDAN 514 Query: 728 LLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784 +A D+L + + W ++ + G RN+ IAPT TI + ++P Sbjct: 515 AVAVRMDDLDAPVWAAATEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLAMSCDTTGLEP 574 Query: 785 SYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDL 841 + + K G +VN + L++ E + + + G++ + + + Sbjct: 575 DLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQPEQIEAIVAHIADHGNVVDAPGLKTEH 634 Query: 842 KKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGL 897 ++ A I M + + Q WI A S + L E + + ++ +Y +AW MG+ Sbjct: 635 YEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVNLPETATVEDVEEVYFEAWKMGV 694 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 K R S K + T + Sbjct: 695 KALAIYRDNCKVGQPLSAKTKEKEKEAVTAKAEDTIRTAVEKVVE 739 >gi|29375102|ref|NP_814255.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis V583] gi|227519133|ref|ZP_03949182.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX0104] gi|227553837|ref|ZP_03983886.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis HH22] gi|229548396|ref|ZP_04437121.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis ATCC 29200] gi|255971024|ref|ZP_05421610.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|256617389|ref|ZP_05474235.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256957627|ref|ZP_05561798.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256959664|ref|ZP_05563835.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|257080135|ref|ZP_05574496.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|257083551|ref|ZP_05577912.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|257085824|ref|ZP_05580185.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|257088967|ref|ZP_05583328.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257418243|ref|ZP_05595237.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257420750|ref|ZP_05597740.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis X98] gi|293384856|ref|ZP_06630699.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis R712] gi|293389146|ref|ZP_06633613.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis S613] gi|294780705|ref|ZP_06746066.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis PC1.1] gi|307268567|ref|ZP_07549939.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4248] gi|307275555|ref|ZP_07556696.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2134] gi|307288832|ref|ZP_07568810.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0109] gi|307290615|ref|ZP_07570523.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0411] gi|312904831|ref|ZP_07763971.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0635] gi|312908154|ref|ZP_07767132.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312979090|ref|ZP_07790805.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 516] gi|29342561|gb|AAO80326.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Enterococcus faecalis V583] gi|227073410|gb|EEI11373.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX0104] gi|227177090|gb|EEI58062.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis HH22] gi|229306612|gb|EEN72608.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis ATCC 29200] gi|255962042|gb|EET94518.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|256596916|gb|EEU16092.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256948123|gb|EEU64755.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256950160|gb|EEU66792.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256988165|gb|EEU75467.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|256991581|gb|EEU78883.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|256993854|gb|EEU81156.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|256997779|gb|EEU84299.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257160071|gb|EEU90031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257162574|gb|EEU92534.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis X98] gi|291077860|gb|EFE15224.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis R712] gi|291081517|gb|EFE18480.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis S613] gi|294452315|gb|EFG20756.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis PC1.1] gi|306498329|gb|EFM67838.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0411] gi|306500301|gb|EFM69640.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0109] gi|306507660|gb|EFM76789.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2134] gi|306515056|gb|EFM83599.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4248] gi|310625862|gb|EFQ09145.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 512] gi|310631837|gb|EFQ15120.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0635] gi|311288124|gb|EFQ66680.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis DAPTO 516] gi|315026266|gb|EFT38198.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2137] gi|315032245|gb|EFT44177.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0017] gi|315035531|gb|EFT47463.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0027] gi|315143981|gb|EFT87997.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX2141] gi|315146929|gb|EFT90945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4244] gi|315155003|gb|EFT99019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0043] gi|315158780|gb|EFU02797.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0312] gi|315161037|gb|EFU05054.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0645] gi|315166221|gb|EFU10238.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1302] gi|315170810|gb|EFU14827.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1342] gi|315574920|gb|EFU87111.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0309B] gi|315576499|gb|EFU88690.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0630] gi|315582367|gb|EFU94558.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0309A] gi|327534209|gb|AEA93043.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis OG1RF] Length = 719 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N + ++R R L V D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|257080867|ref|ZP_05575228.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|256988897|gb|EEU76199.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] Length = 719 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 158/709 (22%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEY-- 325 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 326 DNLVANPSIRKRKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N + ++R R L V D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIARERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|229547641|ref|ZP_04436366.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX1322] gi|255973537|ref|ZP_05424123.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256761392|ref|ZP_05501972.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256852444|ref|ZP_05557820.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis T8] gi|307282793|ref|ZP_07562993.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0860] gi|312900213|ref|ZP_07759525.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0470] gi|229307133|gb|EEN73120.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis TX1322] gi|255966409|gb|EET97031.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256682643|gb|EEU22338.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256712298|gb|EEU27330.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecalis T8] gi|306503649|gb|EFM72880.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0860] gi|311292574|gb|EFQ71130.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0470] gi|315028519|gb|EFT40451.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX4000] gi|315167730|gb|EFU11747.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1341] Length = 719 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIKKYSMDF-IEKLYAFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N + ++R R L V D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|309805907|ref|ZP_07699939.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 03V1-b] gi|312873293|ref|ZP_07733348.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2052A-d] gi|308167683|gb|EFO69830.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 03V1-b] gi|311091173|gb|EFQ49562.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2052A-d] Length = 725 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 184/754 (24%), Positives = 313/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + K + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKIKPNTKKFKS-FQERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I ++ K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|237651505|ref|YP_002898976.1| putative ribonucleoside-diphosphate redutase [Roseophage EE36P1] gi|220898137|gb|ACL81394.1| putative ribonucleoside-diphosphate redutase [Sulfitobacter phage EE36phi1] Length = 776 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 150/652 (23%), Positives = 256/652 (39%), Gaps = 83/652 (12%) Query: 299 QILYDRYFLHINGSRI---EMPQAFFMRVAM------GLALKETEKEKRAVEFYNLLSSF 349 QI +Y E + R+A L TE++ FYN L F Sbjct: 13 QIWNQKYRFKTERDGFVSDENVVDTWGRIASACSNLPHLHNNHTERDALEARFYNALYDF 72 Query: 350 HFMCSTPTLFNSGT-RHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F+ + +GT R+ L +C++ T+PD L GIF L+E A+ + GG+G D++ + Sbjct: 73 KFLRAGRINSGAGTGRNVTLFNCYVMGTIPDSLDGIFDMLKEAALTMQQGGGIGYDFSTL 132 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G S G + F+ V + + G R+GA+ A + H D+ +F+ ++ Sbjct: 133 RPKGALVRGVESFSSGPLTFMDVWDSMCKTIMSAGSRRGAMMATMRCDHPDIMDFVTAKQ 192 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D R + N + D FM+ V+ ++ W L Sbjct: 193 ----DPLRLRNFNVSVLCTDEFMEAVSADSDWDLVF------------------------ 224 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + KV++ I A LW +L + P + F D N + + + ++N C E Sbjct: 225 -----DGKVYQTIKAKELWDAILWNTYNYAEPGVIFIDRINKENNLWFLETIAATNPCGE 279 Query: 588 ITLNSSSEETAVCNLGSINLLAHFA------NNQFDYDKLASTIRTAVRVLDNVIDINCH 641 L C LGS+NL H + D L T+RT VR+LD+V++ + Sbjct: 280 QPLPPY----GACLLGSVNLAKHVVFPFVKGQAEIDMGMLEQTVRTGVRILDSVVETSLF 335 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +E + R GLG+ G AL + Y S +AV+ D M I+ A S+++ Sbjct: 336 PLEAQRDEARFKRRQGLGVTGLADALFMTGHKYGSEQAVDFTDTIMMNIAIWAYEESIKM 395 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 A+E G + E R++ + + +K + G+RNS Sbjct: 396 AKEMGPAPCL----------------VSKEAREKFIQSGFMQRMPQYIKVGILEWGIRNS 439 Query: 762 NCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 + +++APT TI+ G S +P + Y + + D T + ++D A+ Sbjct: 440 HLLSVAPTGTISMYAGNVSSGGEPIFAPKYQRKVTNDDGT---------KRTETVYDYAV 490 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + ++ + + ATA ++ P I + QKW+D + S + L + Sbjct: 491 LKFEEHFG--ENDNPEAIWWWENYMATAQDLTPADHIVMQAVIQKWVDSSISKTVNLPED 548 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDP 931 S +Y A+ G K R T S + + Sbjct: 549 ISFDDFKAVYDHAYTTGCKGCTTYRPNDVTGSVLSVETKEEKPIEIETSVPQ 600 >gi|38234437|ref|NP_940204.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium diphtheriae NCTC 13129] gi|38200700|emb|CAE50396.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium diphtheriae] Length = 719 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 170/711 (23%), Positives = 285/711 (40%), Gaps = 72/711 (10%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R +K R + + T E +E + + + Sbjct: 35 GRIQFDKDREAANQFFLQHVNQNTVFFHDL--EEKIEYLVENNYYEPEVLDKYSFAGIKD 92 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338 L + +LG Y Y L +G R E + VA+ LA + Sbjct: 93 LFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLA---DGSIEL 149 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + + + F +TPT NSG + SCFL + D++ I ++ L+K Sbjct: 150 ARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRG 209 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D+ NQ G R+GA YL H Sbjct: 210 GGVALLLSNLRESGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHP 269 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK Sbjct: 270 DILNFLDTKRENADEKIRIKTLSLGIVIPDITFELAKRNEDMYLFSP---YDVERVYGKP 326 Query: 518 F-----EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 F Y + + K I+A + ++ + + FE+G+P+I F+D N +P Sbjct: 327 FADISVTELYADMVEDPRIRKTK----INARSFFQTIAEIQFESGYPYIMFEDTVNRANP 382 Query: 573 QQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 G ++ SNLC+EI N+ V S NL + D A T+ Sbjct: 383 I--EGRINMSNLCSEILQVNSPSVLNADLTYEHVGEDISCNLGSMNIAMAMDSTDFAKTV 440 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V + + ++ KK N AIGLG M L HI Y S E ++ + Sbjct: 441 ETAIRGLTAVSEQTSIDSVPSIKKGNDAAHAIGLGQMNLHGYLGREHIFYGSEEGLDFTN 500 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELAM 738 + + + AS ++A ER + F+ S + G + P D A+V++ Sbjct: 501 AYFAAVLYQCLRASHKIAAERGQRFEGFETSDYADGSYFDRFDPADFAPKTAKVQELFEN 560 Query: 739 NRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + + W+ELK+ V G+ N A+ PT +I+ I + SI P + ++ Sbjct: 561 STIVVPTAEDWEELKQLVMKDGLFNRYLQAVPPTGSISYINNSTSSIHPIASRIEIRKEG 620 Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G + N+ + + A+EI Sbjct: 621 KIGRVYYPAPHMDND-------------------------------NLEYYQDAYEIGFE 649 Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + K++DQ SL L+ + + + ++ AW G+K+ YY+R Sbjct: 650 KVIDTYAVATKYVDQGLSLTLFFKDNVTTRDINRAQIYAWRKGIKSLYYIR 700 >gi|91776891|ref|YP_546647.1| ribonucleoside-diphosphate reductase [Methylobacillus flagellatus KT] gi|91710878|gb|ABE50806.1| Ribonucleoside-diphosphate reductase [Methylobacillus flagellatus KT] Length = 719 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 142/657 (21%), Positives = 256/657 (38%), Gaps = 61/657 (9%) Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAF---FMRVAMGLALKETEKEKR--AVEFYN 344 D + + L I +Y L Q + RVA LA E +EKR E + Sbjct: 19 DVPMQSVSLDIWDKKYRLKTKQGSFID-QDMDDTYKRVARALADVEETEEKRSLWFEKFL 77 Query: 345 LLSSFHFMCSTPTLFNSGTRHPQL----SSCFLTT-VPDDLYGIFGALQENAMLAKYSGG 399 + + N+G + + +C ++ V D + GI + E + K G Sbjct: 78 WALRRGAIPAGRITSNAGAQEHKPATSTINCTVSGIVEDSMDGILEKVHEAGLTLKAGCG 137 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G +++ +R GA + G + G + F+ + + V+ G R+GA A + H DV Sbjct: 138 IGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDISHPDV 197 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 +F+ ++ + R N + I FM+ V +A W L P + + Sbjct: 198 TDFIKAKR----EAGRLRQFNLSTLITREFMEAVKTDAEWKLAFPVTAREAEQDKLDLDD 253 Query: 520 IAYENYERQADRGE-----------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCN 568 + + + +V++ I A LW +++ ++ P D N Sbjct: 254 EHAVVWREWPVKDKYLTRESDGKVACRVYKTIKAQRLWDVIMSSTYDFAEPGFILIDRVN 313 Query: 569 IRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLAS 623 + + + ++N C E L C LGSINL FD+D+ Sbjct: 314 EMNNNWYCENIRATNPCGEQPLPPY----GACLLGSINLTKFVREPFTDKAYFDWDEYRE 369 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + R+LDNV++IN +++ + R G+G +G S L +L + Y ++++ Sbjct: 370 VVAIFTRMLDNVVEINGLPLQQQRDEIARKRRHGMGYLGLGSTLTMLRMKYGEADSLQFT 429 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLLAEVRDEL 736 +E + ++ V+LA+E+G + + D I L +V+ ++ Sbjct: 430 EEVTKVMAEVGWEVGVQLAEEKGPAPIMEEEFEITPDLLSKRPEMAKDGIKLGDKVKGKV 489 Query: 737 AMNRTSRLPWD---ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYV 791 M R SR L+KR+ G R S+ +IAPT TI+ S I+PS+ + Y Sbjct: 490 LMGRYSRYLQQFPAALRKRIAETGARFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYS 549 Query: 792 KSNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 ++ + V+ F L R L + + S ++P+ + Sbjct: 550 RNVIREGKKSKEKVDVFSYELLAYRALVNPDAMPF------SDQAETQLPE----YFMDS 599 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 I ++ + QKWID + S + + + IY A+ GLK R Sbjct: 600 STIPAKAHVDIQAAAQKWIDSSISKTINVPTDYDFNDFKDIYLYAYEKGLKGCTTFR 656 >gi|157148213|ref|YP_001455532.1| ribonucleotide-diphosphate reductase subunit alpha [Citrobacter koseri ATCC BAA-895] gi|157085418|gb|ABV15096.1| hypothetical protein CKO_04024 [Citrobacter koseri ATCC BAA-895] Length = 706 Score = 304 bits (777), Expect = 7e-80, Method: Composition-based stats. Identities = 178/735 (24%), Positives = 303/735 (41%), Gaps = 71/735 (9%) Query: 193 LSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY 252 + + ++ + + L +K +K R+ V + + Sbjct: 1 MKQETMDYHALNAMLNLYDK-------AGHIQFDKDRQAVEVFFATHVRPNSVSFASQ-- 51 Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + +V L +LG Y Y L +G Sbjct: 52 DERLEYLLREGYYDESVLTRYDRAFVVKLFAHAHASGFRFQTFLGAWKYYTSYTLKTFDG 111 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA E A++ + + S F +TPT N G + +L Sbjct: 112 KRYLEDFEDRVTMVALTLAQG---NEALAMQLTDEILSGRFQPATPTFLNCGKQQRGELV 168 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 169 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 228 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 229 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVT 288 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP D+ +YGK F + + +V ++ I+A +++ Sbjct: 289 FRLAKENAQMALFSP---YDVERIYGKPFGDIAISERYDELLADERVRKQYINAREFFQR 345 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------N 601 + + FE+G+P+I ++D N +P G ++ SNLC+EI +S+ + Sbjct: 346 LAEIQFESGYPYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASTYDENLDYAQTGH 403 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + + D T+ TA+R L V D+ + ++ + N AIGLG Sbjct: 404 DISCNLGSLNIAHTMDSPNFGRTVETAIRGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQ 463 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L I Y SPEA++ + +++HA++ S+ +A+ER ++ FK S + G Sbjct: 464 MNLHGYLAREGIAYGSPEALDFTNLYFYTVTWHALNTSMMMARERGKTFAGFKQSRYASG 523 Query: 720 VF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + D VR A M R W L+ V G+ N N A+ PT + Sbjct: 524 EYFEQYLQGDWQPKTDTVRALFARSGMTLPGREMWARLRDEVMRYGIYNQNLQAVPPTGS 583 Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ +G F+ N Sbjct: 584 ISYINHATSSIHPIVSKIEIRKEGKTGRVYYPAPFMTN---------------------- 621 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + ++ A+EI P +I++ + + +DQ SL L+ + + + ++ Sbjct: 622 ---------ENLDMYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQ 672 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 673 IYAWRKGIKTLYYIR 687 >gi|3077613|emb|CAA70765.1| ribonucleotide reductase subunit R1E [Corynebacterium ammoniagenes] Length = 720 Score = 304 bits (777), Expect = 7e-80, Method: Composition-based stats. Identities = 164/690 (23%), Positives = 276/690 (40%), Gaps = 67/690 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301 H +Y IE V+ + +++ +D ++ + K F F + Sbjct: 51 LQHVNQNTVYFHDLEEKIEYLVENKYYEPEVIEAYDWEFIKSLFKRAYSFKFRFKSFLGA 110 Query: 302 YDRYF----LHINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y +G R E + RV+M A + + S F +TP Sbjct: 111 YKYYTSYTLKTFDGRRYLERFED---RVSMTALFLADGDTAVAESMVDEIMSGRFQPATP 167 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G +L SCFL + D++ I A+ + L+K GG+ + +R GA I Sbjct: 168 TFLNAGKAQRGELVSCFLLRIEDNMESIGRAINSSLQLSKRGGGVALLLSNIRESGAPIK 227 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S G+IP +K+ D NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 228 HIENQSSGIIPIMKMLEDAFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIR 287 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGE 533 ++ IPD+ +N LFSP +V ++ Y + Sbjct: 288 IKTLSLGIVIPDITFDLAKRNEDMYLFSPYDVERVYGKPFGDISVSDHYAEMVEDPRITK 347 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 +KI+A ++ + + FE+G+P+I F+D N +P G ++ SNLC+EI +S Sbjct: 348 ----KKINARHFFQTVAELQFESGYPYIMFEDTVNNANP-VKTGRINMSNLCSEILQVNS 402 Query: 594 SEET-------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 + + S NL + D T+ A+R L V D ++ Sbjct: 403 PSSFNDDLSYEEMGSDISCNLGSMNIALAMDSPDFGGTVEAAIRGLTAVADKTAIDSVPS 462 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 + N AIGLG M L HI Y S E ++ + + + A+ AS ++A+ER Sbjct: 463 IRHGNDQSHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYAALRASNKIAKER 522 Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 +S FK S + GVF + + E+ ++ S W +LK V Sbjct: 523 GETFSEFKDSDYASGVFFDNYDPAEFAPQTDKVKELFANSTIHTPSAEDWADLKAEVMEH 582 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDL 815 G+ N N A+ PT +I+ I + SI P + ++ G + N+ Sbjct: 583 GLYNRNLQAVPPTGSISYINNSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDND------ 636 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 A+E+ +I++ + K++DQ SL L Sbjct: 637 -------------------------NLDYFQDAYEVGHEKIIDTYAVATKYVDQGLSLTL 671 Query: 876 YLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + ++ AW G+KT YY+R Sbjct: 672 FFRDTAATRDINRAQIFAWRKGIKTLYYIR 701 >gi|300861975|ref|ZP_07108055.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|300848500|gb|EFK76257.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TUSoD Ef11] gi|323479609|gb|ADX79048.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis 62] Length = 719 Score = 304 bits (777), Expect = 7e-80, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N + ++R R L V D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIAKERNQVFHNFEKSNYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|309804853|ref|ZP_07698915.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 09V1-c] gi|308165792|gb|EFO68013.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 09V1-c] Length = 725 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKTMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I ++ K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|315149361|gb|EFT93377.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX0012] Length = 719 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 287/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E+ ++ + + MDF + L L + Sbjct: 32 KEALAAFFKENVEPNTRKFSSAEEKINFLMKEDFIETEFIEKYSMDF-IEKLYAFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FQFKSFMAAYKFYSQYALKNNAGTEYLETYED---RVAFNALYFADGDEELALTLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIEMFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSVEREYGVPYSYVDITKEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ K RKI A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 328 LVANPNIRK--RKIKARDLENEISKLQQESGYPYIINIDTANKNNPI--DGKIIMSNLCS 383 Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI N E + S NL + N + ++R R L V D Sbjct: 384 EILQIQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + N IGLG MG + H+ Y S E+++ D +++ + S Sbjct: 444 EIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEESLDFTDIYFMLLNYWTLMES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + +F+ S + G + I + + + + W L+ Sbjct: 504 NQIAKERNQVFHNFEKSDYASGAYFDKYIEGNFTPKFDKVKEIFKDIQIPTAEDWAALRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLANDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + Q+ +DQ Sbjct: 624 I-------------------------------PYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGIKSIYYIRT 701 >gi|258544276|ref|ZP_05704510.1| ribonucleoside-diphosphate reductase, alpha subunit [Cardiobacterium hominis ATCC 15826] gi|258520514|gb|EEV89373.1| ribonucleoside-diphosphate reductase, alpha subunit [Cardiobacterium hominis ATCC 15826] Length = 555 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 155/600 (25%), Positives = 255/600 (42%), Gaps = 95/600 (15%) Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT 375 P+A +A A + + A F++ ++ ++ S+P N G SCF + Sbjct: 32 TPEARIRAIAEH-AGNILQDDTFAERFHHYMARGYYSLSSPIWSNFGLSRGLPISCFGSY 90 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D +Y I E M++K GG + +R G+ I NGKS G F K+ + Sbjct: 91 IGDSIYDIMRTTAEVGMMSKIGGGTSAYFGAIRPRGSDISN-NGKSDGSFNFSKLFDTII 149 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 ++QG RKG Y++ H D++E+LD+ + M I + +++ + Sbjct: 150 DVISQGTSRKGQFAGYIDIDHGDIDEWLDIHT----EGNPIQLMYYGVCISNAWLESMKA 205 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 E +W K+L E Sbjct: 206 GDP--------------------EKR----------------------RVWAKVLQRKAE 223 Query: 556 TGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 TG P++ FKD N P + V++SNLCTEI L +S EE+ VC L S+NLL Sbjct: 224 TGIPYLFFKDNANAGRPDVYKDRNMTVYASNLCTEIMLPASDEESFVCCLSSMNLLYFDE 283 Query: 613 NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +L + AV +++A + HRA+GLG++G+ S L I Sbjct: 284 WKHTDAPELLTQFLDAVMSEFIEKSAEIPFLDRAHRFAKRHRALGLGVLGWHSYLQANRI 343 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEV 732 + S A++ +E + + ++AS LA + G KG Sbjct: 344 AFDSFAAMQKNNEIFQLLQEKTLAASKALAAKFGEPELLKG------------------- 384 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYV 791 G RN+ ++IAPT + + I G VS S++P N +V Sbjct: 385 -----------------------YGRRNTTLLSIAPTKSSSFILGSVSPSVEPFKSNYHV 421 Query: 792 KSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 K T N FLV LK++ + +E + +DGS+ ++ + D+ K+I T EI Sbjct: 422 KDLAKIKTTYKNPFLVELLKEKGIDNEKTWESILLNDGSVQHLAALNDEEKEIFKTFAEI 481 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 + +I+ A++RQK+IDQ QS+N+ + + + ++ +Y A +GLK+ YY S SA Sbjct: 482 SQLAVIQQAAQRQKYIDQGQSINVMIHPDTPTRDINQLYLTAAELGLKSIYYQHSMSAAQ 541 >gi|319407581|emb|CBI81231.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp. 1-1C] Length = 716 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 176/675 (26%), Positives = 279/675 (41%), Gaps = 62/675 (9%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E IEE R L E + L R +LG Y Y L +G Sbjct: 62 KEKIDYLIEEKYYERELFELYDFSFVKKLFKRAYAFRFRFPTFLGAFKYYTSYTLKTFDG 121 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + RV + + A + + + F +TPT N+G + +L Sbjct: 122 KRYLERYED---RVCLVALYLAQGNKSLAEGLVDEIITGRFQPATPTFLNAGKKQRGELV 178 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GV+P +K Sbjct: 179 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIKKIENQSSGVLPVMK 238 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H+D+ +FLD ++ D++ R ++ IPD+ Sbjct: 239 MLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVRIKTLSLGVIIPDIT 298 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVF-RKISAVALWRK 548 + N LFS D+ + GK F ++ K+ +KISA ++ Sbjct: 299 FELARNNEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSKIRKKKISARVFFQT 355 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEETAVCN 601 + + FE+G+P+I F+D N +P G + SNLCTEI + AV N Sbjct: 356 LAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEASELETDLTYRAVGN 413 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + + D T+ AVR L V D+ N + K N AIGLG Sbjct: 414 DISCNLGSMNIAKAMESDNFGRTVEIAVRALTAVSDMSNIACVPSIAKGNAESHAIGLGQ 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQG 719 M L I Y +PEA++ + +++HA+ AS +A+ER + F+ S + G Sbjct: 474 MNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERKEVFVGFEKSAYANG 533 Query: 720 VFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F I I + + EL +R W ELK+ V G+ N A+ PT + Sbjct: 534 HFFIKYIEKEWKPQFELVQELFTRNNIVIPNQKDWQELKQLVAQYGLYNRYLQAVPPTGS 593 Query: 772 IANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G ++ N Sbjct: 594 ISYINYATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT--------------------- 632 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + A+EI P +I++ + + +DQ SL L+ + + + ++ Sbjct: 633 ----------NLEFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLFFPDTATTRDINRAQ 682 Query: 890 RQAWLMGLKTTYYLR 904 AW G+K+ YY+R Sbjct: 683 IYAWKKGIKSLYYVR 697 >gi|149277656|ref|ZP_01883796.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp. BAL39] gi|149231344|gb|EDM36723.1| ribonucleotide-diphosphate reductase alpha subunit [Pedobacter sp. BAL39] Length = 696 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 163/706 (23%), Positives = 289/706 (40%), Gaps = 55/706 (7%) Query: 226 EKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L ++ + + + Y+ E ++ + + N + Sbjct: 21 FSLHKDKEAVRSYFLDYVNKNTVFFYTLKEKIDYLIEQEYYIDFYQWYTFEQMEEVYNMV 80 Query: 286 KYERDFAFEYLGLQILYDRYFLHIN--GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 ++ ++ + Y L + +E + + VA+ L A + Sbjct: 81 YAKKFRFQSFMSAFKFFQSYALRDDSGEKFLERYEDRVVAVALFLGQG---NVDHAKAYA 137 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 LL + + +TPT NSG + +L SCFL + D+L GI A+ L+ GG+ Sbjct: 138 ELLINQEYQPATPTFLNSGKKRSGELVSCFLDEIGDNLNGIGYAIDSAMKLSSIGGGVSF 197 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +RG G I ++ GV+P +K+ DT NQ G+R GA YL +H D+EEF Sbjct: 198 NISKIRGRGESIKDVENRAGGVLPIMKILEDTFSYANQLGQRPGAGAVYLNVFHTDIEEF 257 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD +K D++ R ++ +PD FM+ ++ LF P V + Y E + Sbjct: 258 LDCKKINVDEKVRIKSLSIGVIVPDKFMELAEKDEACYLFQPHTVYKAYGKYLDEMD-MD 316 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E YE +K +KI+A L K+ E+G+P++ FK N + +G V S Sbjct: 317 EMYEELLTNSAVKK-KKINARHLMVKIAQTQKESGYPYLFFKGNANKGHALKDIGNVKFS 375 Query: 583 NLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 NLCTEI S + + S NL + + ++ + TA+R L V Sbjct: 376 NLCTEIMQVSEVSDIEIYGREDQIKYGISCNLGSLNIATVMENKRIKEAVTTAMRSLTVV 435 Query: 636 IDINCHT-IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D+ + +K+N ++GLG M L I Y S EA++ + ++F++ Sbjct: 436 SDLTNIAMVPSVQKANKELHSVGLGAMNLHGFLTKNFIMYESKEALDFCNVFFMMVNFYS 495 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLL------AEVRDELAMNRTSRLPWD 747 I +S+E+A+E+ + F+ S + G + I + M + W Sbjct: 496 IQSSMEIAKEKKETFVGFEKSEYANGNYFSQYIAKDILPVNDKIAKLFEGMAIPTAEDWK 555 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L VK G+ ++ +AIAP + + I + S+ P + V+ +L Sbjct: 556 QLMANVKEFGLYHAYRLAIAPNQSTSYIMNATASVMPVVDVIEVREYGDSTTYYPMPYLD 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ + +A+++D ++ S QK + Sbjct: 616 ND-------------------------------NYFFYKSAYDMDQKNVLRLISVIQKHV 644 Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 DQ S L+ + + + + + Y A MGLK+ YY R+R A+ E Sbjct: 645 DQGISTILHTNTKDNTRDIAKYYIYAHKMGLKSLYYTRTRKASIDE 690 >gi|167578702|ref|ZP_02371576.1| ribonucleotide reductase system [Burkholderia thailandensis TXDOH] Length = 843 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 143/655 (21%), Positives = 253/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGDER----TADDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---HRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+D LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFARLDGGESVFDWDALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G AL +L + Y + E + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDALVMLGLRYDAQEGRDFAARVARVMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA ERGA+ F S + L + D++++ ++ Sbjct: 412 RASVELACERGAFPLFDASRY-------------------LEEGTFASRLPDDIQEAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G + + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVDALPG-------YFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609 >gi|297618137|ref|YP_003703296.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Syntrophothermus lipocalidus DSM 12680] gi|297145974|gb|ADI02731.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Syntrophothermus lipocalidus DSM 12680] Length = 571 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 154/659 (23%), Positives = 257/659 (38%), Gaps = 98/659 (14%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 G ++ RY + G+ E R+A +A E E + F ++ F Sbjct: 2 LSADGQKLFEARYAIRDEKGTVAETFDQAVGRLARTVATAEKEPSQWEERFARIIGELFF 61 Query: 352 MCSTPTLFNSGTRHP--QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + STP N G Q ++CF+ + D L +F L++ A++ K GG+G +++ +R Sbjct: 62 VPSTPIWANVGKPDRPWQPAACFVLPLEDSLESVFETLKDTALVFKSGGGVGYNFSAIRP 121 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 G + + G++ GV+ L++ + A + QGG R+GA L H ++ EF+ + Sbjct: 122 RGFPVRSSQGQAFGVVELLRLYDHAAGIIVQGGVRRGACMGILNADHPEILEFIRAKLAG 181 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 G + N + + D FM+ V +N W L + Sbjct: 182 G-----LANFNLSVGVGDAFMEAVRENGTWRLVFNGQAIA-------------------- 216 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 ++ A +W ++ G P + F D RS V+ ++N C E+ Sbjct: 217 ---------ELPAAEVWEAIVEASHACGEPGLVFLDAL-QRSNPIRGTVIAATNPCGEVP 266 Query: 590 LNSSSEETAVCNLGSINLL-AHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKK 648 L + C LGSINL A +LA T+ AVR LDN+ID+ + + + Sbjct: 267 LLAG----ESCILGSINLAPMVDAAGNLKEVQLAETVGIAVRFLDNLIDVGQYPLTFIAQ 322 Query: 649 SNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAY 708 + R IG+G G AL + Y S E AD + I A AS ELA+E+GA+ Sbjct: 323 TTRATRRIGVGFTGLADALIKSGLAYDSEEGRAWADRAAAIIKAAAEEASRELAREKGAF 382 Query: 709 SSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 + S++ +P D RN+ +++AP Sbjct: 383 PWWGRSVY----YPDDP--------------------------------RRNAALLSVAP 406 Query: 769 TATIANICGVSQ-SIDPSYQNLYVKSN-MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 T ++ I I+P + Y KS +G V + + E ++ + + Sbjct: 407 TGSVTLIAACEGYGIEPIFAVAYTKSTSAAGKIEVFSPLFLQECERHGI--PETVRSEVA 464 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885 GS ++ IP D+ ++ A EI P + + QK +D A S + L E + + Sbjct: 465 RRGSCQGVDGIPADMARVFKGAREIAPEDHLLMQAAVQKHVDNAVSKTVNLPREATPADV 524 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 D +R AW +GLK R + K V V + C Sbjct: 525 DHTFRLAWELGLKGVTVFREGA--------------KPAPVTVGAGEPEEPPEAHRNCC 569 >gi|159037049|ref|YP_001536302.1| vitamin B12-dependent ribonucleotide reductase [Salinispora arenicola CNS-205] gi|157915884|gb|ABV97311.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Salinispora arenicola CNS-205] Length = 962 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 127/621 (20%), Positives = 227/621 (36%), Gaps = 28/621 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E A E +L F ++P FN GT Q+S+CF+ V D + I Sbjct: 111 GYFATPADAEIFAHELTWMLLHQVFSFNSPVWFNVGTSSPQQVSACFILAVDDSMDSILD 170 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 171 WYKEEGLIFKGGSGSGVNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF+ + D R D + + V Sbjct: 230 RAAKMVILDVDHPDIEEFVVTKAREEDKVRALRDAGFDMDLGGTDIVSVQYQNANNSVRV 289 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + G F++ R + V I A L+R + +E P + + Sbjct: 290 TDEFMAAVQSGGTFDLR--------GRLDGTVIDTIDAKPLFRTISQAAWECADPGLQYD 341 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLAS 623 D N G + +SN C+E + + CNL S+NL+ ++ F+ K Sbjct: 342 DTINDWHTCPETGRITASNPCSEYLH----LDNSSCNLASLNLMRFLRSDGGFEVAKFVR 397 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I EK + +R +G+G + L +PY+S + +A Sbjct: 398 SVELVITAMDISICFADFPTEKIGATTRAYRQLGIGYANLGALLMASGLPYSSDQGRSLA 457 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD----ELAMN 739 ++ A S ELA GAY + + E++ A+ Sbjct: 458 AAITSLMTGTAYRRSAELAGIVGAYDGYARNAEPHKRVMRKHAAANDEIKPSGTVATAVQ 517 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSG 797 R + W K G RNS +APT TI + + ++P + + K G Sbjct: 518 REATRQWSLGNKIGDRNGWRNSQASVLAPTGTIGLMMDCDTTGVEPDLALVKFKKLVGGG 577 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EID 852 +VN + L+ +E + + + G + + + + + A I Sbjct: 578 SMQIVNQTVPRALRSLGYPEEQVEAIVEHIAEHGHVVDAPGLKPEHYPVFDCAMGERSIA 637 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q +I A S + + E + + ++ IY + W +GLK R Sbjct: 638 PMGHVRMMAAVQPFISGAISKTVNMPEQATVEDVEKIYFEGWRLGLKALAIYRDNCKVGQ 697 Query: 912 EKSTLKGVDGKLNAVPVTDPN 932 S K +V Sbjct: 698 PLSVAKKDRNAAVSVESVPAA 718 >gi|259500783|ref|ZP_05743685.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] gi|302190766|ref|ZP_07267020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus iners AB-1] gi|259167477|gb|EEW51972.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] Length = 725 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I ++ K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|238762670|ref|ZP_04623639.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] gi|238698975|gb|EEP91723.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia kristensenii ATCC 33638] Length = 693 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 172/712 (24%), Positives = 288/712 (40%), Gaps = 77/712 (10%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + +EEG + + E Sbjct: 16 DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLERYDFS 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + VA+ LA Sbjct: 63 FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCLVALTLAAG--- 119 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 ++ A + + S F +TPT N G + +L SCFL + D++ I ++ L Sbjct: 120 NQQVARDLVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ T +R +GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 180 SKRGGGVAFLLTNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP +V ++ + Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSPYDVERVYGV 299 Query: 514 YG--KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 Y + K I A ++ + + FE+G+P++ F+D N + Sbjct: 300 PMSEISVSEKYREMVDDKRIRKSK----IKAREFFQILAEIQFESGYPYMMFEDTVNRAN 355 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLAST 624 P G ++ SNLC+EI +S E + S NL + D + Sbjct: 356 PI--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSLNIAQTMDSPDFGKS 413 Query: 625 IRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 I TA+R L V D+ N ++ +K N AIGLG M L I Y S EA++ Sbjct: 414 IETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFT 473 Query: 684 DESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA 737 + +++HAI AS +LA ER + F S + G + A+VR A Sbjct: 474 NIYFYTVAYHAIRASNQLAIERGSHFKGFDQSTYASGHYFNKYTEQSWQPKTAKVRSLFA 533 Query: 738 MNRTS---RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 S + W L++ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 534 EAGISVPNQQDWVALRQSVMAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKE 593 Query: 795 MS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 G ++ N+ + + A++I P Sbjct: 594 GKIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGP 622 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 623 EKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674 >gi|227112967|ref|ZP_03826623.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 693 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 166/679 (24%), Positives = 278/679 (40%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +EEG + + + L + +LG Y Y L +G Sbjct: 40 EKLRYLVEEGYYEADVLDQYSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 99 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA A + + S F +TPT N G + +L S Sbjct: 100 RYLERYEDRVCLVALTLA---KGDTALASALVDEIISGRFQPATPTFLNCGKKQRGELVS 156 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 157 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 216 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 217 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 276 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + N LFSP D+ +YG + + ++ + I A ++ + Sbjct: 277 QLAKNNQVMYLFSP---YDVEQVYGVPLSEISVTEKYHEMVNDKRIRKSQIKAREFFQIL 333 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P++ F+D N +P G ++ SNLC+EI S + Sbjct: 334 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKD 391 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ + T+ A+R L V D+ + ++ +K N AI Sbjct: 392 ISCNLGSMNIANAMTSP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAI 446 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715 GLG M L I Y + EAV+ + ++FHAI AS LA E +S F+ S Sbjct: 447 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 506 Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + I E ++ ++ ++ W L++ V G+ N N A+ Sbjct: 507 YATGEYFDKYIEQTWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVP 566 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 567 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMSND----------------- 609 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 610 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 655 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 656 NKAQIYAWTKGIKTIYYIR 674 >gi|319899231|ref|YP_004159324.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella clarridgeiae 73] gi|319403195|emb|CBI76754.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella clarridgeiae 73] Length = 708 Score = 303 bits (776), Expect = 9e-80, Method: Composition-based stats. Identities = 170/689 (24%), Positives = 283/689 (41%), Gaps = 66/689 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ V+ + + +D ++ K F F +LG Sbjct: 40 LQHVNQNTVFFHNLKEKIDYLVEENYYERELFELYDFSFIKKLFKRAYAFKFRFPTFLGA 99 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + RV + + A + + F +TP Sbjct: 100 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGNKVLAEGLVDEIIIGRFQPATP 156 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL V D++ I ++ L+K GG+ T +R GA I Sbjct: 157 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 216 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GV+P +K+ D NQ G R+GA YL H+D+ +FLD ++ D++ R Sbjct: 217 KIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 276 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFS D+ + GK F ++ K Sbjct: 277 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNSK 333 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 + +KISA ++ + + FE+G+P+I F+D N + G + SNLCTEI Sbjct: 334 IRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRANSI--AGRISMSNLCTEILQVSEA 391 Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646 + AV N S NL + + + T+ AVR L V D+ N + Sbjct: 392 SELETDLTYRAVGNDISCNLGSMNIAKAMESNDFGKTVEIAVRALTAVSDMSNIACVPSI 451 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-R 705 K N AIGLG M L I Y +PEA++ + +++HA+ AS +A+E + Sbjct: 452 AKGNAESHAIGLGQMNLHGFLARERIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERQ 511 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL--------AMNRTSRLPWDELKKRVKTIG 757 + F+ S + G F I + + EL + S+ W ELK+ V G Sbjct: 512 KMFVGFERSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPSQKDWQELKQLVTQYG 571 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816 + N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 572 LYNRYLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 624 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + A+EI P +I++ + + +DQ SL L+ Sbjct: 625 ------------------------NLEFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLF 660 Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + ++ AW G+K+ YY+R Sbjct: 661 FPDTATTRDINRAQIYAWKKGIKSIYYVR 689 >gi|284046866|ref|YP_003397206.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Conexibacter woesei DSM 14684] gi|283951087|gb|ADB53831.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Conexibacter woesei DSM 14684] Length = 963 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 126/658 (19%), Positives = 235/658 (35%), Gaps = 76/658 (11%) Query: 302 YDRYFLHINGSRIE-MPQAFFMRVAMGLALKETEK---------EKRAVEFYNLLSSFHF 351 + +N + E + RVA +A ++ + E ++L Sbjct: 76 QKYFRGQLNTAARERSVRQMIGRVAGTIATWGRQRGYFATREDGDVFEAELTHILLHQLA 135 Query: 352 MCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 ++P FN G PQ S+CF+ +V D + I G + + + G G + + +RG Sbjct: 136 AFNSPVWFNVGFEEQPQCSACFILSVEDTMESILGWNTKEGNIFRGGSGSGINLSNIRGS 195 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNT 469 + G + G + F++ A+ A + GGK R+ A L+ H DV+EF+ + Sbjct: 196 MEPLRK-GGTASGPVSFMRGADSWAGTIKSGGKTRRAAKMVVLDVDHPDVQEFIWCKAKE 254 Query: 470 GDD-------------------RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 D + + N + + D FM+ V + W Sbjct: 255 EDKAEALRNAGFDMSIDGDGFTSIQYQNANNSVRVSDAFMQAVEKGEDW----------- 303 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 R + + + A L R++ + P + + N Sbjct: 304 ----------------DLIARTDGSAVKTVDARELMREIAEAAWRCADPGVQYDTTINQW 347 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAV 629 + G +++SN C+E + + CNL S+NL+ + FD + Sbjct: 348 HTSPNSGRINASNPCSEYMHV----DDSACNLASLNLMKFRRPDGTFDVANFEHAVDVVF 403 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 + V+ + + E K+ + R +GLG + L +PY S A Sbjct: 404 LAQEIVVGASSYPTEGIAKNANAFRQLGLGYANLGAYLMSNGMPYDSDAGRGTAAAITAL 463 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRLP 745 ++ A S E+A G + + + + D+ + SR Sbjct: 464 MTGRAYQRSAEIAGAVGTFERYAENREPHNAVMRMHRDASYAIPNASCDDDGLLTASRRV 523 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVN 803 WD+ + + G RN+ +APT TI+ + + ++P + + + + G T+VN Sbjct: 524 WDDAVELGEKNGYRNAQATVLAPTGTISFLMDCDTTGVEPDFSLVKFKELVGGGQMTIVN 583 Query: 804 SFLVNELKQRDLWDEAM--ISDLKYHDGSIGNIERIPDDLKKIHATA---FEIDPMWLIE 858 + L+ DE + I +I + + + A I M I+ Sbjct: 584 RTVPLALQTLGYSDEQVEQIESHINDASTIVGAPGLAAEHLPVFDVAVGERAISHMGHIK 643 Query: 859 SASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 Q +I A S + L + + + + Y QAW +G+K R S T+ T Sbjct: 644 MMGAVQPFISGAISKTVNLPQTATVEDIADAYLQAWRLGVKALAIYRDGSKTAQALRT 701 >gi|325912229|ref|ZP_08174626.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 143-D] gi|325475888|gb|EGC79057.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 143-D] Length = 725 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 184/754 (24%), Positives = 311/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + K + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKIKPNTKKFKS-FQERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I + K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNTNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|196040726|ref|ZP_03108025.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus NVH0597-99] gi|196028516|gb|EDX67124.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus NVH0597-99] Length = 682 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A+E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|317049231|ref|YP_004116879.1| ribonucleoside-diphosphate reductase subunit alpha [Pantoea sp. At-9b] gi|316950848|gb|ADU70323.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. At-9b] Length = 712 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 174/707 (24%), Positives = 286/707 (40%), Gaps = 64/707 (9%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 R EK + T E + EG + L Sbjct: 28 GRIQFEKDHEATHQFFLQHVAPNTVPFASA--AERLRYLVAEGYYEAEVLNQYDFNFLCQ 85 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKR 338 L ++ +LG Y Y L +G R E + VA+ LA E Sbjct: 86 LHDEADAWGFRFHTFLGAWKFYTSYTLKTFDGKRYLESFEQRACMVALTLA---RGNEAL 142 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A E + S F +TPT N G + +L SCFL + D++ I A+ L+K Sbjct: 143 ARELLAEMLSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRG 202 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + +R GA I +S GVIP +K+ D NQ G R+GA +L H Sbjct: 203 GGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVWLNAHHP 262 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D+ FLD ++ D++ R ++ IPD+ + +N LFSP D+ +YGK Sbjct: 263 DILRFLDTKRENADEKIRIKTLSLGVVIPDVTFRLAKENREMALFSP---YDVERIYGKA 319 Query: 518 FEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV 576 F + + ++ + I ++ + + FE+G+P+I ++D N Sbjct: 320 FGDISISEHYDEMLADDRIRKTFIQPRDFFQTLAEIQFESGYPYIMYEDSVNR--SNPIA 377 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAV 629 G ++ SNLC+EI +S+ E S NL + + D LA T+ AV Sbjct: 378 GRINMSNLCSEILQVNSASEFHDDLSYRRVGKDISCNLGSLNIAHAMDSRNLAQTVEVAV 437 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L V D+ +++ + N AIGLG M L + Y S EA++ + Sbjct: 438 RALTAVSDMSEINSVPSVAEGNRRSHAIGLGQMNLHGYLAREGMAYGSAEALDFTNLYFY 497 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMN 739 +++HA+ S LAQER ++ F+ S + G + + R + + Sbjct: 498 CVTYHAVRTSNLLAQERKQSFDGFEKSTYASGAYFDKYSERAWQPRTARVAQLFADAGIA 557 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 S+ W L+ V T G+ N N AI PT +I+ I + SI P + ++ +G Sbjct: 558 LPSQADWQALRDAVMTHGLYNQNLQAIPPTGSISYINHATSSIHPIVSRIEIRKEGKTGR 617 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 F+ N+ N++ + A++I P +I+ Sbjct: 618 VYYPAPFMTND-----------------------NLDF--------YQDAYQIGPEAIID 646 Query: 859 SASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + +DQ SL L+ D+ + + ++ AW G+KT YY+R Sbjct: 647 TYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYIR 693 >gi|294815514|ref|ZP_06774157.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces clavuligerus ATCC 27064] gi|326443865|ref|ZP_08218599.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces clavuligerus ATCC 27064] gi|294328113|gb|EFG09756.1| Vitamin B12-dependent ribonucleotide reductase [Streptomyces clavuligerus ATCC 27064] Length = 961 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 122/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E F++ + + R D + + + ++D Sbjct: 243 VDHPDIEGFIETKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + + E R GEI ++ A AL+RKM + P I + D N Sbjct: 297 FMRAVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTC 354 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ N FD ++ A + Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLTDDGEGNQSFDVERFAKVVELV 410 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S IA Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISS 470 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ + S ELA G Y + + ++ + Sbjct: 471 LMTGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE 530 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RN+ IAPT TI + ++P + + K G +V Sbjct: 531 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ E + + + G++ + + + ++ A I M + Sbjct: 591 NGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAPGLKTEHYEVFDCAMGERSISAMGHV 650 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + E + ++++ IY +AW MG+K R S Sbjct: 651 RMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 710 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 + T+ + Sbjct: 711 TKEKEQDGIAEKTEDTIRAAVEKVIE 736 >gi|254391044|ref|ZP_05006252.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces clavuligerus ATCC 27064] gi|197704739|gb|EDY50551.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces clavuligerus ATCC 27064] Length = 965 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 122/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 128 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 187 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 188 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 246 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E F++ + + R D + + + ++D Sbjct: 247 VDHPDIEGFIETKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 300 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + + E R GEI ++ A AL+RKM + P I + D N Sbjct: 301 FMRAVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTC 358 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ N FD ++ A + Sbjct: 359 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLTDDGEGNQSFDVERFAKVVELV 414 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S IA Sbjct: 415 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISS 474 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ + S ELA G Y + + ++ + Sbjct: 475 LMTGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE 534 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RN+ IAPT TI + ++P + + K G +V Sbjct: 535 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 594 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ E + + + G++ + + + ++ A I M + Sbjct: 595 NGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAPGLKTEHYEVFDCAMGERSISAMGHV 654 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + E + ++++ IY +AW MG+K R S Sbjct: 655 RMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 714 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 + T+ + Sbjct: 715 TKEKEQDGIAEKTEDTIRAAVEKVIE 740 >gi|194014861|ref|ZP_03053478.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus pumilus ATCC 7061] gi|194013887|gb|EDW23452.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus pumilus ATCC 7061] Length = 700 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 155/674 (22%), Positives = 280/674 (41%), Gaps = 59/674 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312 E IE D+ + ++ ++ Y+ Y L N Sbjct: 53 EKIDYLIENDYYEEEFLRQYSMADIKEVFEAAYAKKFRFPSFMSAFKFYNDYALKTNDKK 112 Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370 +E + VA+ A + EK A+EF L+ + + STPT N+ R +L S Sbjct: 113 KILERYEDRISVVALFFAGGDKEK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVS 169 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL V D L I A+ + L+K GG+ + + +R G I ++GV+ +K+ Sbjct: 170 CFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKL 229 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 ++ +Q G+R+G+ AYL +H D+ +FLD +K + D+ R ++ IPD F+ Sbjct: 230 LDNAFRYADQMGQRQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFI 289 Query: 491 KRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + ++ F P V + L + E Y + + +IK + ++ L K Sbjct: 290 ELAREDKTAYTFYPHTVYKEYGQHLDEMDMEEMY---DELVENPKIKKEK-VNPRKLLEK 345 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCN 601 + + E+G+P+I F+D N H+ V SNLC+E+ S +E + Sbjct: 346 LAVLRSESGYPYIMFQDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGL 405 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + N + T++ A L V + + +K+N ++IGLG Sbjct: 406 DISCNLGSLNIMNVMKNKSIEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGA 465 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L + Y S EA + A+ +++++I S ELA+E+ + ++GS + G Sbjct: 466 MNLHGYLAQNQMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATG 525 Query: 720 VFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + D + M+ ++ W LK V GM +S + IAPT +I+ Sbjct: 526 EYFNKYVENDFTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSIS 585 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + + S+ P + + ++ + L S N Sbjct: 586 YVQSATASVMPIMERIEERTYGNSKTYYPMPGL-----------------------SAQN 622 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892 + A+++D +++ + Q+ +DQ S L+L + + + L+ I A Sbjct: 623 --------WFFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYA 674 Query: 893 WLMGLKTTYYLRSR 906 G+KT YY R++ Sbjct: 675 HHKGIKTLYYARTK 688 >gi|76803442|ref|YP_327711.1| ribonucleotide-diphosphate reductase subunit alpha [Natronomonas pharaonis DSM 2160] gi|76559257|emb|CAI50864.1| ribonucleoside-diphosphate reductase, alpha subunit 1 [Natronomonas pharaonis DSM 2160] Length = 564 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 154/601 (25%), Positives = 251/601 (41%), Gaps = 109/601 (18%) Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLA 394 + A FY+ +S + ++P N G SCF + + D + I E + Sbjct: 58 DDGFADRFYDYMSRGFYSLASPVWSNFGLDRGLPISCFGSYMEDSMESILYTQAEVGEMT 117 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 K GG + +R G+ I NGKS G F ++ + V+QG R+G Y++ Sbjct: 118 KLGGGTSGYFGEIRPRGSPI-TNNGKSNGSYSFTELFDTIINVVSQGETRRGQFAGYIDV 176 Query: 455 WHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLY 514 H D+EE+L+++ + D+ I D + + + Sbjct: 177 EHDDLEEWLNIKT----EGDPVQDIYYGVIIGDDWFQAMVDGDE---------------- 216 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 E W +++ G P+I F+D N PQ Sbjct: 217 ----EKR----------------------ETWAEIIEARINIGVPYIIFRDNMNEGKPQV 250 Query: 575 HVG---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 + +++SNLCTEI L ++ +E+ VC L S+N L + D + T R Sbjct: 251 YKDKGYEINASNLCTEIALPATPDESFVCCLSSMNALHYGEWKDTD------AVETLTRF 304 Query: 632 LDNVIDINC------HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 LD V++ +E+ + HRAIG+G++G+ S L IP+ S EA++ +E Sbjct: 305 LDAVMEEFIEEAEGTQFMERPVRFAKRHRAIGIGVLGWHSYLQSEMIPFDSMEAMKKNEE 364 Query: 686 SMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 I + S LA E G +G Sbjct: 365 IFRTIRERSYEESRRLADEFGEPEVLEG-------------------------------- 392 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNS 804 G RN+ M++APT + + I G VS SI+P N +V+ T N Sbjct: 393 ----------YGRRNTTTMSVAPTKSSSVILGQVSPSIEPLKSNYFVRDGAKLKSTQKNR 442 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 FL LKQR + + + DGS+ +++ + D+ K+I T EI M +I A++RQ Sbjct: 443 FLEAILKQRGRDEREVWDSIAQQDGSVQHLDCLTDEEKEIFKTFAEIPQMAIINQAAQRQ 502 Query: 865 KWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 K+IDQAQSLN+ + E S K+++ +Y +AW G+K+ YY S +A +K + ++ K Sbjct: 503 KYIDQAQSLNISIDPSEVSVKEINQLYIEAWRKGVKSLYYQNSVNA--AQKFSRDILECK 560 Query: 923 L 923 Sbjct: 561 A 561 >gi|228945049|ref|ZP_04107410.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814718|gb|EEM60978.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 682 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A+E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|239991245|ref|ZP_04711909.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces roseosporus NRRL 11379] Length = 965 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 128/715 (17%), Positives = 240/715 (33%), Gaps = 60/715 (8%) Query: 273 MMDFDLVYLANDLKYERD--FAFEYLGLQ-------ILYDRYFLHINGSRIEMPQ----- 318 + + + RD FE G++ + + PQ Sbjct: 37 YDEVEWERRDVVMTNWRDGSINFEQRGVEFPDFWSVNAVNIVTSKYFRGAVGTPQRETGL 96 Query: 319 -AFFMRVAMGLALKETEK---------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQ 367 R+ + E E L F ++P FN GT Q Sbjct: 97 KQLIDRIVKTYRKAGEDNNYFASPADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQ 156 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 +S+CF+ V D + I +E M+ K G G + + +R + G + G + F Sbjct: 157 VSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSF 215 Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++ A+ +A + G R+ A L+ H D+E F++ + + R D Sbjct: 216 MRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIRALRDAGF----- 270 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVA 544 + + ++ EF A E+ + R + V ++ A + Sbjct: 271 -----DMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRARMTGDVIEEVEAKS 325 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 L+RKM + P I + D N G ++ SN C+E + CNL S Sbjct: 326 LFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH----LDNTSCNLAS 381 Query: 605 INLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+ N F+ ++ A + + +D I +K ++ R +G+G Sbjct: 382 LNLMKFLKDDGLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGENTRAFRQLGIG 441 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + L Y S +A ++ + S ELA G Y + + Sbjct: 442 YANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPYDGYARNAEPHQ 501 Query: 720 VFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 A+ + + + W ++ + G RN+ IAPT TI Sbjct: 502 RVMKQHADANAKAVHIDDLDSPVWAAATEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLA 561 Query: 776 CGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSI 831 + ++P + + K G +VN + L++ E + + + +G++ Sbjct: 562 MSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQPEQIEAIVAHIAENGNV 621 Query: 832 GNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + + + ++ A I M + + Q WI A S + L E + + ++ Sbjct: 622 VDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVNLPESATVEDVEE 681 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 +Y +AW MG+K R S K + + Sbjct: 682 VYFEAWKMGVKALAIYRDNCKVGQPLSAKTKEKEKEEVTAKAEETIREAVEKVVE 736 >gi|227876444|ref|ZP_03994556.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] gi|269976012|ref|ZP_06183016.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris 28-1] gi|306817403|ref|ZP_07451148.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus mulieris ATCC 35239] gi|307700430|ref|ZP_07637469.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris FB024-16] gi|227842985|gb|EEJ53182.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] gi|269935840|gb|EEZ92370.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris 28-1] gi|304649844|gb|EFM47124.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus mulieris ATCC 35239] gi|307614415|gb|EFN93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Mobiluncus mulieris FB024-16] Length = 733 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 164/703 (23%), Positives = 275/703 (39%), Gaps = 65/703 (9%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E + L + E + + + +F + + Sbjct: 58 EAARQFFVNHVNPNTVSFNTLQEKIDYLVTEGYYEKETIDQYRFEFIKSLFQKAYAH--N 115 Query: 291 FAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 F F +LG Y Y L +G R E + RV M E A + + Sbjct: 116 FRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLGRGDETLATDIMEEII 172 Query: 348 SFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TPT N+G + ++ SCFL + D++ I L L+K GG+ T Sbjct: 173 TGRYQPATPTFLNAGKKARGEMVSCFLVRIEDNMESIARGLNSALQLSKRGGGVALLLTN 232 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I +S GV+P +K+ D NQ G R+GA YL +H D+ FLD + Sbjct: 233 LREAGAPIKRIQNQSSGVVPVMKMLEDAFSYANQLGARQGAGAVYLNAFHPDIMSFLDTK 292 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY-ENY 525 + D++ R ++ IPD+ + LFSP D+ +YG F Sbjct: 293 RENADEKIRIKTLSLGVVIPDIAFELAKNKEPMYLFSP---YDIERVYGVPFSEISVTEK 349 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 R+ ++I A ++ + + FE+G+P+I ++D N +P G + SNLC Sbjct: 350 YRELVDNPQIHKKQIDARKFFQTLAEIQFESGYPYILYEDTVNRANPI--DGRIVMSNLC 407 Query: 586 TEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +EI N V S NL + D +IR A+R L V D+ Sbjct: 408 SEILQVSEASELNPDLSYQKVGKDISCNLGSMNIAKTLDSPDFEQSIRVAIRALTAVSDL 467 Query: 639 NC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + ++ N A+GLG M L I Y SPE ++ + +F+A+ A Sbjct: 468 TNVECVPTIQRGNAMSHAVGLGAMNLHGCLARHEIFYGSPEGLDFTNMYFYATAFYALKA 527 Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDE 748 S ELA ER + F+ S + G + I E + + ++ + W Sbjct: 528 SHELAVERGQRFEGFERSQYATGEYFEKYINETWEPKTAKVREIFAQSSVKLPTTEDWRR 587 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLV 807 L + ++ GM N N AI PT +I+ I + SI P + ++ G ++ Sbjct: 588 LAEAIQRDGMYNQNLQAIPPTGSISYINNSTASIHPVASKIEIRKEGKIGRVYYPAPYMT 647 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ + + A+EI +I++ + + + Sbjct: 648 ND-------------------------------NLEYYQDAYEIGYEKIIDTYAEATQHV 676 Query: 868 DQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 DQ SL L+ + + + ++ AW G+K+ YY+R R A Sbjct: 677 DQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQAA 719 >gi|312871261|ref|ZP_07731359.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 3008A-a] gi|312874780|ref|ZP_07734799.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2053A-b] gi|311089525|gb|EFQ47950.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2053A-b] gi|311093275|gb|EFQ51621.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 3008A-a] Length = 725 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 183/754 (24%), Positives = 311/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I ++ K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|262198687|ref|YP_003269896.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Haliangium ochraceum DSM 14365] gi|262082034|gb|ACY18003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Haliangium ochraceum DSM 14365] Length = 963 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 141/785 (17%), Positives = 269/785 (34%), Gaps = 95/785 (12%) Query: 228 LRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK- 286 L + V + E + + + + + + + Sbjct: 2 LHKVVGNERETNMSETKQAESKRARAQDRPGFEVSRYFTSEGVDPYSEVEWELRDATITG 61 Query: 287 -------YERDFAFEYLGLQILYDRYFLHINGSRIEMPQ------AFFMRVAMGLALK-- 331 ++ F Q + + P+ RVA + Sbjct: 62 ANGKVYFEQKQVEFPKAWSQTATNVVVQKYFRGTVGTPERERSVKQMIGRVADTIFGWGR 121 Query: 332 -------ETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGI 383 + + + E +LL + ++P FN PQ S+CF+ +V D + I Sbjct: 122 KDGYFRSDKDAWRFRDELVHLLVNQKMAFNSPVWFNVGVETEPQCSACFINSVDDSMSSI 181 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + ML KY G G++ + +R ++HG G + G + F++ + A A+ GGK Sbjct: 182 LTLARTEGMLFKYGSGTGSNLSSLRSSAENLHG-GGTASGPVSFMRGFDAFAGAIKSGGK 240 Query: 444 -RKGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNT 481 R+ A L+ H D+ +F++ + D + N Sbjct: 241 TRRAAKMVILDAEHPDIVDFVECKAKEEQKAWALIDAGYDGGFNEPGGAYDSVNYQNANH 300 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 + + D FM+ V ++ WT + + D+H + Sbjct: 301 SVRVSDSFMQAVVDDSSWTTHAVLDGRDIH---------------------------TMP 333 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCN 601 A L RK+ G P + F N +P +++SN C+E + + CN Sbjct: 334 ARELMRKIADAAHLCGDPGMQFDSTINDWNPCIGTARINASNPCSEYMF----LDDSACN 389 Query: 602 LGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 L S+NL + + FD + I ++ ++D + K +++H R +GLG Sbjct: 390 LASLNLRRFQSEDGNFDVEAYKHAIEITTLAMEIIVDNASYPTPKIGENSHRFRPLGLGY 449 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQG 719 + L +PY S A + A S +A + G ++ + + Sbjct: 450 ANLGALLMSRGLPYDSEPGRAYAAALTAILCGQAYRTSARIAADATGPFAGYDENREPFL 509 Query: 720 VFPIDSIGLLAE---VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 +A+ + +R W+++ + + G RN+ +APT TIA + Sbjct: 510 RVMNKHRKAVADIDAALVPYDLMEAARGAWNDVVELGEKHGFRNAQTTVLAPTGTIAFLM 569 Query: 777 GV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIG 832 + ++P + Y + G +VN + L++ ++ + + + D SI Sbjct: 570 DCDTTGVEPDIALVKYKRLVGGGMLKMVNQTVPEALRRLGYSEQQLEGIINHIDTQESIE 629 Query: 833 NIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884 + ++ + AF I M I S Q ++ A S + L + + Sbjct: 630 GTSVLKEEHLPVFDCAFRSPSGTRSIHYMGHIRMMSAVQPFLSGAISKTVNLPSDCTVGD 689 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 ++ Y QAW +GLK R + ST K A+ T S L P Sbjct: 690 IEDAYLQAWKLGLKAIAVYRDGCKRTQPLSTSKQQATSNGAIAKTLSESDVLELLAPDER 749 Query: 945 TSDTE 949 + Sbjct: 750 AMIED 754 >gi|154686151|ref|YP_001421312.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus amyloliquefaciens FZB42] gi|154352002|gb|ABS74081.1| NrdE [Bacillus amyloliquefaciens FZB42] Length = 700 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 156/696 (22%), Positives = 289/696 (41%), Gaps = 56/696 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E IE D+ + ++ Sbjct: 30 KEAVHSYFVDYINQNTVYFHDL-KEKLDYLIENQYYEEEFLSLYSFEDIKEVFKTAYAKK 88 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y+ Y L N +E + R+++ ++A E+ NL+ Sbjct: 89 FRFPSFMSAFKFYNDYALKTNDKKRILERYED---RISIVALFFANGDTEKAKEYVNLMI 145 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + STPT N+ R +L SCFL V D L I A+ + L+K GG+ + + Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +FLD + Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K + D+ R ++ IPD F++ ++ +F P + + + E + YE Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMD-MTAMYE 324 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 D +K + ++A L K+ + E+G+P+I F+D N HV V SNLC+ Sbjct: 325 ELVDNPRVKKEK-VNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFSNLCS 383 Query: 587 EITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 E+ + +E L S NL + N + + T++ A L +V + Sbjct: 384 EVLQASQVSAYTDYDEEDEIGLDISCNLGSLNILNVMKHKSIERTVKLATDSLTHVSETT 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +++N ++IGLG M L I Y SPEA + A+ ++F++I S Sbjct: 444 DIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRS 503 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKK 751 ELA+E+ + ++GS + G + I E M+ + W ELK Sbjct: 504 AELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFEGMHIPTIEDWKELKA 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 V GM +S + IAPT +I+ + + S+ P + + ++ + Sbjct: 564 FVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP--------- 614 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + + + + A+++D +++ + Q+ IDQ Sbjct: 615 ----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQGI 652 Query: 872 SLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 S L+L + + + L+ I A G+KT YY R++ Sbjct: 653 SFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|319954719|ref|YP_004165986.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga algicola DSM 14237] gi|319423379|gb|ADV50488.1| ribonucleoside-diphosphate reductase, alpha chain [Cellulophaga algicola DSM 14237] Length = 595 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 156/650 (24%), Positives = 260/650 (40%), Gaps = 122/650 (18%) Query: 294 EYLGLQILYDRYFLHINGSRI---EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 G L + +N + E P+ +A + +FY +S + Sbjct: 36 SEPGFDWLTEHSRNFLNSGYLTDNETPEQRIREIADRAEKLLDMP-GFSDKFYGYMSDGY 94 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 + ++P N G SCF + + DD+ I E M++K GG + +R Sbjct: 95 YSLASPVWSNFGKERGLPISCFGSHIDDDMGNILYTQSEVGMMSKMGGGTSGYFGKIRHR 154 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA + NG++ G + +++ V+QG R+G YL H D+ EFL++ Sbjct: 155 GAEVKN-NGQASGAVHIMQLFESMVDVVSQGSVRRGRFSPYLPVEHPDISEFLEIGT--- 210 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 + ++ + + +M+ + Sbjct: 211 -EGNPIQELTHGVTVTNEWMQEMIDGDS-------------------------------- 237 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI---RSPQQHVGVVHSSNLCTE 587 A+W K+L E G+P+I FKD N + + +++SNLCTE Sbjct: 238 ----------DKRAIWAKVLQRRGEMGYPYIFFKDNANNGAADVYKDNNHTIYASNLCTE 287 Query: 588 ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 I L S+ + VC L SIN+ +D K + T V LD VI +E + Sbjct: 288 IMLPSNDNWSFVCVLSSINV------MHYDKWKDTDAVETMVYFLDAVITEFLDKLEVYR 341 Query: 648 KS------------------NHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 S +RA+GLG++G+ S L +P+ S +A ++ +E Sbjct: 342 DSDRREDRQTFLFMERAYNFAKDNRALGLGVLGWHSLLQSEMLPFNSQKAYDLNNEIFRT 401 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDEL 749 I + AS ELA + G + KG Sbjct: 402 IKSKSYKASEELASKFGEPAVLKG------------------------------------ 425 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 G RN+ A+APT + A I G VSQ I+P + N+YVK T+ N FLV+ Sbjct: 426 ------YGRRNATLNAVAPTTSSAFILGQVSQGIEPIWSNIYVKDIAKIKTTIKNPFLVD 479 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 L+++ + ++ DGS+ +++ + D K++ T EID + +I A+ RQ ID Sbjct: 480 LLEEKGQNITEVWHSIRERDGSVQHLDFLSDLEKEVFKTYSEIDQLDIIYQAANRQNHID 539 Query: 869 QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 Q QS+N+ + + K+++ I+ AW +GLK+ YY S +A K Sbjct: 540 QGQSVNIIVHPDMPVKEINKIHVTAWKLGLKSLYYQHSMNAAQKFKQKKD 589 >gi|309807847|ref|ZP_07701779.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 01V1-a] gi|309809738|ref|ZP_07703592.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 2503V10-D] gi|325913648|ref|ZP_08176010.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 60-B] gi|329919792|ref|ZP_08276743.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 1401G] gi|308168949|gb|EFO71035.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 01V1-a] gi|308169917|gb|EFO71956.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 2503V10-D] gi|325477007|gb|EGC80157.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners UPII 60-B] gi|328937139|gb|EGG33567.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners SPIN 1401G] Length = 725 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I ++ K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|228938566|ref|ZP_04101174.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971445|ref|ZP_04132071.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978058|ref|ZP_04138437.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis Bt407] gi|228781719|gb|EEM29918.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis Bt407] gi|228788312|gb|EEM36265.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821164|gb|EEM67181.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939075|gb|AEA14971.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 682 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 164/712 (23%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++I+ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|309804069|ref|ZP_07698150.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 11V1-d] gi|308163837|gb|EFO66103.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LactinV 11V1-d] Length = 725 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 183/754 (24%), Positives = 312/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYINEKINPNTKKFKS-FQERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDNLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD+V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDHVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I ++ K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|227488206|ref|ZP_03918522.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] gi|227091776|gb|EEI27088.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51867] Length = 718 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 172/739 (23%), Positives = 297/739 (40%), Gaps = 79/739 (10%) Query: 193 LSESDLETALIFSSRTLIEKEP----NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM 248 +S L+ + + L + + + + AR + + + +K + Sbjct: 13 MSGEQLDYHALNALLNLYDADGKIQFDKDRAAARQFFLQHVNQNTVFFHNLQEKLDY--- 69 Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH 308 ++ + + E + L + + +LG Y Y L Sbjct: 70 ----------LVDNDYYEKEVLEKYNFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLK 119 Query: 309 -INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP 366 +G R E + VA+ LA + E A + + F +TPT NSG + Sbjct: 120 TFDGQRYLERFEDRVCMVALTLAAGD---ENLARNLVDEIILGRFQPATPTFLNSGKKQR 176 Query: 367 -QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 + SCFL + D++ I A+ L+K GG+ + +R GA I +S GVI Sbjct: 177 GEPVSCFLLRIEDNMESIGRAINSALQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVI 236 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 P +K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R ++ I Sbjct: 237 PVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVI 296 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVA 544 PD+ + +N LFSP D+ +YGK F + + ++ + I+A Sbjct: 297 PDITFELAKKNDDMYLFSP---YDVERVYGKAFADVSISEHYYEMVEDPRIHKTKINARH 353 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-- 602 ++ + + FE+G+P+I ++D N +P G V SNLC+EI ++ E Sbjct: 354 FFQTLAEIQFESGYPYIMYEDTVNRANPI--EGRVTQSNLCSEILQVATPSEYNADLSYA 411 Query: 603 -----GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656 S NL + D A+TI TA+R L V + + ++ KK N AI Sbjct: 412 TVGEDISCNLGSLNIAMAMDSTDFATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAI 471 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG M L HI Y S EA++ + + + + AS ++A+ER ++ F S Sbjct: 472 GLGQMNLHGYLGREHIHYGSEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSD 531 Query: 716 WDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G F + + D ++ + W ELK+ V G+ N A+ Sbjct: 532 YASGAFFDRYDPAEFAPKTDKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVP 591 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G + N+ Sbjct: 592 PTGSISYINNSTSSIHPIASRIEIRKEGKIGRVYYPAPHMDND----------------- 634 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + A+EI +I++ + K++DQ SL L+ + S + + Sbjct: 635 --------------NLEYFQDAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDI 680 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 681 NRAQIYAWTHGIKTLYYIR 699 >gi|125624346|ref|YP_001032829.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. cremoris MG1363] gi|124493154|emb|CAL98118.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071130|gb|ADJ60530.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. cremoris NZ9000] Length = 722 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 173/717 (24%), Positives = 297/717 (41%), Gaps = 85/717 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E +T +K+ + +E Y + ++E E + L +L Sbjct: 32 KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149 Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+ R + SCFL + DD+ I + L+K GG+G + T +R Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V + LF P V YGK F E Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 ++ + I+A L +++ + E+G+P+I D N +P GV+ SNLC+E Sbjct: 327 KMVANPEIRKTPINARELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGS N+L ++ D+ +++ + VR L + Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRALTFI 440 Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + + T+ +K N AIGLG MG S L I Y S EAVE ++++ Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSI---------GLLAEVRDELAMNRTSRL 744 + AS +LA E+ ++ +F+ S + G + + + E+ +A+ + Sbjct: 501 LVASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTIA-- 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W EL+ VKT G+ NS MA+AP +I+ I S SI P + + G Sbjct: 559 DWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP- 617 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L E + + +A++ D +I+ + Sbjct: 618 --------AAGLATETI----------------------PYYKSAYDTDMRAVIDVYAAA 647 Query: 864 QKWIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+KT YY+R+ Sbjct: 648 TEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|291295356|ref|YP_003506754.1| ribonucleoside-diphosphate reductase subunit alpha [Meiothermus ruber DSM 1279] gi|290470315|gb|ADD27734.1| ribonucleoside-diphosphate reductase, alpha subunit [Meiothermus ruber DSM 1279] Length = 691 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 163/685 (23%), Positives = 287/685 (41%), Gaps = 65/685 (9%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312 E F I+EG DL+ L + ++ + Y Y L + Sbjct: 46 ERFQALIQEGYYEDFF-ARYEAADLLRLYRLAESYPFRFQSFMAVSKFYKDYALKSDDKK 104 Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 +E + VA+ L + +K + V + + +TPT N+G +L S Sbjct: 105 LYLERYFERVLAVALHLGQGDVQKAEAYVR---AMMEQRYQPATPTFLNAGRARRGELVS 161 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D L I L L+K GG+ + + +R G I G ++GV+P K+ Sbjct: 162 CFLLELDDSLNSIGYNLNAAMQLSKIGGGVALNLSKLRARGEPIKGVAHAAKGVVPVAKL 221 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D +Q G+RKGA YL +H DVEEFLD +K D++ R ++ +P F Sbjct: 222 LEDAFNYADQMGQRKGAGAVYLNIFHWDVEEFLDTKKINADEKSRLQTLSLGLLVPQKFF 281 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + +F+P V + + + YE E+K R +SA + ++ Sbjct: 282 DLAEAGEDFYVFAPYSVYRAFGEHLDDMD-LDRMYEALVAHPEVKK-RPLSARQMLTRIA 339 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETA 598 FE+G+P+I ++ N + P + +G + SNLCTEI + Sbjct: 340 QTQFESGYPYIVYRSNANRQHPLKALGQIKMSNLCTEIFQLQTPTLVGDAGEVVEAGFDI 399 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIG 657 CNLGS+N++ LA ++ TA+ L V D + + ++N ++G Sbjct: 400 SCNLGSLNIVNVMEQ-----QNLAESVHTAMDALTAVSDASAVRQVPGVWRANQAFHSVG 454 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG+M L I Y S EA + ++++++ S+E+A+ER + F+ S + Sbjct: 455 LGVMNLHGFLAKNQIRYESEEARDFVRSFFAAMNYYSLERSMEIARERGQTFHGFEQSEY 514 Query: 717 DQG----VFPIDSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 G + D VR + S W LK+ V+ G+ ++ +A+APTA+ Sbjct: 515 ASGRYFEKYQEDFRPRTETVRKLFEGIPLPSPADWARLKEAVEQHGLYHAYRLAVAPTAS 574 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ I + SI P +++ ++ + FL Sbjct: 575 ISYIQNATPSIQPIVEHVETRTYGNATTYYPMPFL------------------------- 609 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890 ++ + +A+ ++ +I+ + Q+ +DQ S L++ E S ++L +Y Sbjct: 610 ------SEETYWFYKSAYHMNMYRVIDLVAEAQQHVDQGISTVLFVTSETSTRELARLYV 663 Query: 891 QAWLMGLKTTYYLRSRSATSVEKST 915 A GLK+ YY R+++ + E T Sbjct: 664 YAAKKGLKSLYYTRTKNLSVEECLT 688 >gi|156312488|ref|XP_001617836.1| hypothetical protein NEMVEDRAFT_v1g8281 [Nematostella vectensis] gi|156196039|gb|EDO25736.1| predicted protein [Nematostella vectensis] Length = 294 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 187/294 (63%), Positives = 240/294 (81%), Gaps = 2/294 (0%) Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH 641 SNLCTEITLN++ E AVCNLGS+NL+ H NN+ + KL TI+TA+R+LDNV+DIN + Sbjct: 1 SNLCTEITLNTNEREIAVCNLGSVNLVNHIENNEINVAKLEKTIKTAMRMLDNVVDINFY 60 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 +EKAK SN HR +GLG+MGFQ LH+L IPYAS EAVE AD+SME IS++A SAS +L Sbjct: 61 PVEKAKNSNLAHRPVGLGMMGFQDCLHMLRIPYASKEAVEFADKSMELISYYAFSASSKL 120 Query: 702 AQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMR 759 A+E+G YSS+K SLWDQG+ P+DS+ LLA+ R L ++ + +L WDEL+ +K GMR Sbjct: 121 AKEKGTYSSYKDSLWDQGILPLDSLKLLAKSRGAQYLDVDESKKLDWDELRSHIKEHGMR 180 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NSNC+AIAPTATIANI G+S SI+P+YQN++VKSN+SG+FTV+N FL+N+LK LWDE Sbjct: 181 NSNCLAIAPTATIANIVGISASIEPTYQNIFVKSNLSGEFTVINDFLINDLKNEGLWDEV 240 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 M+SD+KY DGS+ I+RIPD LK+++ATAFE+DP WL+E+ASRRQKWIDQAQSL Sbjct: 241 MLSDIKYFDGSLQQIDRIPDSLKQLYATAFEMDPKWLVEAASRRQKWIDQAQSL 294 >gi|75538786|sp|O54196|NRDJ_STRCL RecName: Full=Vitamin B12-dependent ribonucleotide reductase; AltName: Full=Ribonucleoside-diphosphate reductase nrdJ gi|3402271|emb|CAA12167.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces clavuligerus] Length = 961 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 123/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E F++ + + R D + + + ++D Sbjct: 243 VDHPDIEGFIETKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + + E R GEI ++ A AL+RKM + P I + D N Sbjct: 297 FMRAVESGSAFGLRARMTGEI--IEQVDAKALFRKMAQAAWACADPGIQYDDTINRWHTC 354 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ N FD ++ A + Sbjct: 355 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLTDDGEGNQSFDVERFAKVVELV 410 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S IA Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRAIAGAISS 470 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ + S ELA G Y + + ++ + Sbjct: 471 LMTGTSYRRSAELAAVVGPYDGYARNAAPHNQVMRQHADANDTAVRMDDLDTPIWAAATE 530 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RN+ IAPT TI + ++P + + K G +V Sbjct: 531 TWQDVLRLGEKNGFRNAQASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIV 590 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ E + + + G++ + + + K+ A I M + Sbjct: 591 NGTVPQALRRLGYQAEQIEAIVEHIAEHGNVLDAPGLKTEHYKVFDCAMGERSISAMGHV 650 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + E + ++++ IY +AW MG+K R S Sbjct: 651 RMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 710 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 + T+ + Sbjct: 711 TKEKEQDGIAEKTEDTIRAAVEKVIE 736 >gi|157692409|ref|YP_001486871.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus pumilus SAFR-032] gi|157681167|gb|ABV62311.1| ribonucleotide-diphosphate reductase alpha subunit [Bacillus pumilus SAFR-032] Length = 700 Score = 302 bits (774), Expect = 2e-79, Method: Composition-based stats. Identities = 153/674 (22%), Positives = 279/674 (41%), Gaps = 59/674 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS- 312 E IE D+ + ++ ++ Y+ Y L N Sbjct: 53 EKIDYLIENDYYEEEFLRQYSMADIKEVFEAAYAKKFRFPSFMSAFKFYNDYALKTNDKK 112 Query: 313 -RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370 +E + VA+ A + K A+EF L+ + + STPT N+ R +L S Sbjct: 113 KILERYEDRISVVALFFAGGDKAK---ALEFVELMINQEYQPSTPTFLNAGRKRRGELVS 169 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL V D L I A+ + L+K GG+ + + +R G I ++GV+ +K+ Sbjct: 170 CFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKL 229 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 ++ +Q G+R+G+ AYL +H D+ +FLD +K + D+ R ++ IPD F+ Sbjct: 230 LDNAFRYADQMGQRQGSGSAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKFI 289 Query: 491 KRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + ++ F P V + L + E Y + + ++K + ++ L K Sbjct: 290 ELAREDKTAYTFYPHTVYKEYGQHLDEMDMEEMY---DELVENPKVKKEK-VNPRKLLEK 345 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCN 601 + + E+G+P+I F+D N H+ V SNLC+E+ S +E + Sbjct: 346 LAVLRSESGYPYIMFQDNVNREHALNHISRVKFSNLCSEVLQASEVSSYADYDQEDEIGL 405 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + N + T++ A L V + + +K+N ++IGLG Sbjct: 406 DISCNLGSLNIMNVMKNKSIEKTVKLATDSLTLVSETTDIRNAPAVRKANKAMKSIGLGA 465 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L + Y S EA + A+ +++++I S ELA+E+ + ++GS + G Sbjct: 466 MNLHGYLAQNQMAYESEEARDFANTFFMMVNYYSIKRSSELAKEKGETFHRYEGSGYATG 525 Query: 720 VFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + D + M+ ++ W LK V GM +S + IAPT +I+ Sbjct: 526 EYFNKYVENDFTPKTEKAAALFEGMHIPTKEDWAALKDFVAENGMYHSYRLCIAPTGSIS 585 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + + S+ P + + ++ + L S N Sbjct: 586 YVQSATASVMPIMERIEERTYGNSKTYYPMPGL-----------------------SAQN 622 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892 + A+++D +++ + Q+ +DQ S L+L + + + L+ I A Sbjct: 623 --------WFFYKEAYDMDMFKVVDMIATIQQHVDQGISFTLFLKDTMTTRDLNRIDLYA 674 Query: 893 WLMGLKTTYYLRSR 906 G+KT YY R++ Sbjct: 675 HHKGIKTLYYARTK 688 >gi|307244662|ref|ZP_07526766.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus stomatis DSM 17678] gi|306492043|gb|EFM64092.1| ribonucleoside-diphosphate reductase, alpha subunit [Peptostreptococcus stomatis DSM 17678] Length = 702 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 162/708 (22%), Positives = 280/708 (39%), Gaps = 66/708 (9%) Query: 226 EKLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 +L + E L + + + + + ++ + + + + L Sbjct: 20 YQLHKDKEALDLYLRDSIDGRSMKFESISDK-IKYLVDNNYYEKEIIDKYSMDFIGDLHE 78 Query: 284 DLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVE 341 +K Y+ Y+ Y L + +E + ++ +A + A + Sbjct: 79 YIKSFGFSFQSYMSASKFYENYALKSDDGEYILEDYNDKILICSLAIA---NGDTEVAKK 135 Query: 342 FYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 L F +TPT N R +L SCFL TV D GI A+ L+K GG+ Sbjct: 136 VAKRLIRQEFQPATPTFLNLGRKRAGELVSCFLLTVEDSCEGISYAVASANHLSKIGGGV 195 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + T +R I G G S GV+ K+ + NQ G R+GA YL H D + Sbjct: 196 ALNLTRLRARAESIKGIEGASGGVVGVAKMLEQSFSYFNQMGARQGAGAVYLNVLHADFD 255 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DLYGKEF 518 +D +K D+R R ++ IPD+FM+ +N F P + + L Sbjct: 256 ALMDTKKINADERVRLATLSIGAIIPDVFMRLAEKNETGYAFYPHSIYKKYGLHLDDLNM 315 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 E Y+ D + ++I+ ++ E+G+P+I + D N + +G+ Sbjct: 316 EEWYDKLVADPDIRK----KEINPRQYLTRIAATQMESGYPYIVYIDTANRDHTLKDLGM 371 Query: 579 VHSSNLCTEITLNSSSEETAVCNLG--------SINLLAHFANNQFDYDKLASTIRTAVR 630 + SNLC EI + S NL + N + ++ I TAVR Sbjct: 372 IRMSNLCCEIFQYQEPSQIESYGSSASQWGQDVSCNLGSLNIVNLMESKEVDKAIDTAVR 431 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L +V D + H + K N +IGLG M L +I Y + EAVE AD Sbjct: 432 FLTDVSDRTDIHQVPTIKMGNDKSHSIGLGAMNLHGYLMKNNIMYVTDEAVEFADVFFAM 491 Query: 690 ISFHAISASVELAQER-GAYSSFKGSLWDQGV--------FPIDSIGLLAEVRDELA-MN 739 + ++AI S+E+A+ER + F+ S + +G + +D +V+ + Sbjct: 492 MRYYAIKTSMEIARERKETFEGFEKSEYAKGRASDVLGKYYEVDFRPKSDKVKKLFEGIY 551 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W +L VK +G+ N+ MAIAPT +I+ + + SI P + + V+ Sbjct: 552 VPDKNDWAKLLDEVKEVGIYNAYLMAIAPTQSISYVQNSTSSIMPITEQIEVRIYGDSTT 611 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 FL +E M+ + +A+ D +I+ Sbjct: 612 IYPMPFLT---------NENML----------------------FYRSAYNTDMFKVIDV 640 Query: 860 ASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S L++ + + + + Y A+ GLK+ YY R++ Sbjct: 641 VAAAQGHVDQGISTTLFVTDDKTTRDIARYYIYAYKKGLKSLYYTRTK 688 >gi|227542804|ref|ZP_03972853.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] gi|227181430|gb|EEI62402.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium glucuronolyticum ATCC 51866] Length = 718 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 167/720 (23%), Positives = 287/720 (39%), Gaps = 69/720 (9%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES-- 272 +Y + A L ++ + + + +F E+ Sbjct: 19 DYHALNALLNLYDADGKIQFDKDRAAARQFFLQHVNQNTVFFHNLQEKLDYLVDNDYYEK 78 Query: 273 --MMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVA 325 + ++ ++ + F + Y Y +G R E + VA Sbjct: 79 EVLEKYNFEFIKSLYDQAYGHKFRFKTFLGAYKYYTSYTLKTFDGQRYLERFEDRVCMVA 138 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + E A + + F +TPT NSG + + SCFL + D++ I Sbjct: 139 LTLAAGD---EDLARNLVDEIILGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIG 195 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G R Sbjct: 196 RAINSALQLSKRGGGVALLLSNLREEGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGAR 255 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA YL H D+ +FLD ++ D++ R ++ IPD+ + +N LFSP Sbjct: 256 QGAGAVYLHAHHPDIMKFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNDDMYLFSP 315 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ +YGK F + + ++ + I+A ++ + + FE+G+P+I + Sbjct: 316 ---YDVERVYGKAFADVSISEHYYEMVEDPRIHKTKINARHFFQTLAEIQFESGYPYIMY 372 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQF 616 +D N +P G V SNLC+EI ++ E S NL + Sbjct: 373 EDTVNRANPI--EGRVTQSNLCSEILQVATPSEYNADLSYATVGEDISCNLGSLNIAMAM 430 Query: 617 DYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D A+TI TA+R L V + + ++ KK N AIGLG M L HI Y Sbjct: 431 DSTDFATTIETAIRGLTAVSEQTSIDSVPSIKKGNDNAHAIGLGQMNLHGYLGREHIHYG 490 Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-------- 726 S EA++ + + + + AS ++A+ER ++ F S + G F Sbjct: 491 SEEALDFTNAYFAAVMYQCLRASNKIAKERGETFTKFDTSDYASGAFFDRYDPAEFAPKT 550 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + + D ++ + W ELK+ V G+ N A+ PT +I+ I + SI P Sbjct: 551 DKIKAIFDASTVHVPTAEDWAELKRDVMENGLYNRYLQAVPPTGSISYINNSTSSIHPIA 610 Query: 787 QNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + ++ G + N+ + Sbjct: 611 SRIEIRKEGKIGRVYYPAPHMDND-------------------------------NLEYF 639 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 A+EI +I++ + K++DQ SL L+ + S + ++ AW G+KT YY+R Sbjct: 640 QDAYEIGYKAIIDTYAVATKYVDQGLSLTLFFKDTASTRDINRAQIYAWTHGIKTLYYIR 699 >gi|239944781|ref|ZP_04696718.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces roseosporus NRRL 15998] gi|291448244|ref|ZP_06587634.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces roseosporus NRRL 15998] gi|291351191|gb|EFE78095.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces roseosporus NRRL 15998] Length = 965 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 128/715 (17%), Positives = 240/715 (33%), Gaps = 60/715 (8%) Query: 273 MMDFDLVYLANDLKYERD--FAFEYLGLQ-------ILYDRYFLHINGSRIEMPQ----- 318 + + + RD FE G++ + + PQ Sbjct: 37 YDEVEWERRDVVMTNWRDGSINFEQRGVEFPDFWSVNAVNIVTSKYFRGAVGTPQRETGL 96 Query: 319 -AFFMRVAMGLALKETEK---------EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQ 367 R+ + E E L F ++P FN GT Q Sbjct: 97 KQLIDRIVKTYRKAGEDNNYFASPADAEIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQ 156 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 +S+CF+ V D + I +E M+ K G G + + +R + G + G + F Sbjct: 157 VSACFILAVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSF 215 Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++ A+ +A + G R+ A L+ H D+E F++ + + R D Sbjct: 216 MRGADASAGTIKSGGATRRAAKMVILDVDHPDIENFIETKVKEEEKIRALRDAGF----- 270 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK--VFRKISAVA 544 + + ++ EF A E+ + R + V ++ A + Sbjct: 271 -----DMDLGGDDITSVQYQNANNSVRVNDEFMKAVESGGKFGLRARMTGDVIEEVEAKS 325 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 L+RKM + P I + D N G ++ SN C+E + CNL S Sbjct: 326 LFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH----LDNTSCNLAS 381 Query: 605 INLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL+ N F+ ++ A + + +D I +K ++ R +G+G Sbjct: 382 LNLMKFLKDDGLGNQSFESERFAKVVELVITAMDISICFADFPTQKIGENTRAFRQLGIG 441 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 + L Y S +A ++ + S ELA G Y + + Sbjct: 442 YANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYKRSAELAAVVGPYDGYARNAEPHQ 501 Query: 720 VFPIDSIGLLAEVRD----ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 A+ + + + W ++ + G RN+ IAPT TI Sbjct: 502 RVMKQHADANAKAVHIDDLDSPVWAAATEAWQDVIRLGAKNGFRNAQASVIAPTGTIGLA 561 Query: 776 CGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSI 831 + ++P + + K G +VN + L++ E + + + +G++ Sbjct: 562 MSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQVLRRLGYQPEQIEAIVAHIAENGNV 621 Query: 832 GNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDF 887 + + + ++ A I M + + Q WI A S + L E + + ++ Sbjct: 622 VDAPGLKTEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKTVNLPESATVEDVEE 681 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 +Y +AW MG+K R S K + + Sbjct: 682 VYFEAWKMGVKALAIYRDNCKVGQPLSAKTKEKEKEEVTAKAEETIREAVEKVVE 736 >gi|157955313|gb|ABW06028.1| NrdE [Bacillus thuringiensis serovar finitimus] Length = 694 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A+E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|42780544|ref|NP_977791.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus ATCC 10987] gi|42736464|gb|AAS40399.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus ATCC 10987] gi|157955323|gb|ABW06036.1| NrdE [Bacillus thuringiensis serovar tochigiensis] Length = 694 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A+E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYASGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|270291188|ref|ZP_06197411.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus acidilactici 7_4] gi|270280584|gb|EFA26419.1| ribonucleoside-diphosphate reductase, alpha subunit [Pediococcus acidilactici 7_4] Length = 721 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 161/718 (22%), Positives = 299/718 (41%), Gaps = 82/718 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L K+ +A + L + E+ ++A L+ + DF + L + L Sbjct: 28 LHKDQEALAAFLKENVQANTKQFTSLRERFDYLLEEDYIEAELVEKYSFDF-IEKLYDYL 86 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 + + ++ Y +Y L N + + + F RVAM E+ A++ + Sbjct: 87 RAQNFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADE 145 Query: 346 LSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+ +L SCFL DD+ I + L+K GG+G + Sbjct: 146 IIHQRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 206 TNLREAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + + + LFSP V ++ + + Sbjct: 266 AKKENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVEKVYGK-PYAYVDITKE 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ + EIK ++ + A + ++ + E+G+P++ D N +P G + SNL Sbjct: 325 YDNLVNNPEIKKYK-VKARNIENEISKLQQESGYPYVVNVDTANRENPIY--GKIVMSNL 381 Query: 585 CTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI + CNLGS N++ A ++ T VR L Sbjct: 382 CSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPH-----FGKSVETMVRAL 436 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + + N IGLG MG L H+ Y P++VE ++ Sbjct: 437 TFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLLN 496 Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRL 744 + + AS ++A+ERG + +F+ S + G + + + ++ + Sbjct: 497 YWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTTA 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W +LK+ V G+ + N MA+APT +I+ I + S+ P + + G Sbjct: 557 DWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQPIVNRVEERQEKKIGKIYYPA 616 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L N+ K + +A++ID +++ + Sbjct: 617 PYLSND-------------------------------TLKYYQSAYDIDMRKVVDIYAAA 645 Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ S+ ++ ++ + + L+ + A G+K+ YY+R+ Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703 >gi|298345733|ref|YP_003718420.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 43063] gi|298235794|gb|ADI66926.1| ribonucleotide-diphosphate reductase subunit alpha [Mobiluncus curtisii ATCC 43063] Length = 714 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 166/722 (22%), Positives = 283/722 (39%), Gaps = 83/722 (11%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 + + AR + + + +K + +EEG + Sbjct: 35 DADREAARQYFLQHVNKNTVFFHDLREKLDY-------------LVEEGYYEEDTLKQYS 81 Query: 275 DFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKE 332 + L + +LG Y Y L +G R E + RV M Sbjct: 82 FKFIKSLYEKAYSHKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFED---RVCMVALYLA 138 Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFGALQENA 391 E+ AV+ + + + +TPT N+G + ++ SCFL + D++ I + Sbjct: 139 RGDEQLAVDIMEEIIAGRYQPATPTFLNAGKKARGEMVSCFLVRLEDNMESIARGINSAL 198 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 L+K GG+ T +R GA I +S GV+P +K+ D+ NQ G R+GA Y Sbjct: 199 QLSKRGGGVALLLTNLREAGAPIKKIQNQSSGVVPVMKLLEDSFSYANQLGARQGAGAVY 258 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 + +H D+ FLD ++ D++ R ++ +PD+ + LFSP D+ Sbjct: 259 ISAFHPDIMSFLDTKRENADEKIRIKTLSLGVMVPDITFELARNKEPMYLFSP---YDVE 315 Query: 512 DLYGKEFEI--AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +YG F E Y D I+ +KI A ++ + + FE+G+P+I F+D N Sbjct: 316 RVYGVPFSDISVTEKYREMVDNPNIRK-KKIDARKFFQTLAEIQFESGYPYIVFEDTVNR 374 Query: 570 RSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYD 619 +P + V ++ E + + CNLGS+N+ + Sbjct: 375 ANPIDGRIIMSNLCSEILQVSEPSVLNEDLSYAKVGKDISCNLGSMNIAKALESP----- 429 Query: 620 KLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPE 678 A +I A+R L V D+ + ++ N AIGLG M L I Y S E Sbjct: 430 DFAKSINVAIRALTAVSDLTNVGCVPTIQRGNSMSHAIGLGAMNLHGCLAKNQIFYGSDE 489 Query: 679 AVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF-----PIDSIGLLAEV 732 ++ + +F+A+ AS LA ERG + F+ S + G + D A+V Sbjct: 490 GLDFTNMYFYATAFYALKASHALAVERGVTFEGFERSQYASGEYFEKYLQGDWTPRTAKV 549 Query: 733 RDELAMNRT---SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 R+ + + W L +K G+ N N AI PT +I+ I + SI P + Sbjct: 550 RELFEKSSIHLPTPEDWRALAADIKRDGLYNQNLQAIPPTGSISYINNSTSSIHPIASKI 609 Query: 790 YVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 ++ G ++ N+ + A Sbjct: 610 EIRKEGKIGRVYYPAPYMTND-------------------------------NLDYYQDA 638 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRS 907 +EI +I++ + K +DQ SL L+ + + + ++ AW G+K+ YY+R R Sbjct: 639 YEIGYEKIIDTYAEATKHVDQGLSLTLFFPDTITTRDVNKAQIYAWRKGIKSLYYIRLRQ 698 Query: 908 AT 909 A Sbjct: 699 AA 700 >gi|304385473|ref|ZP_07367818.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus acidilactici DSM 20284] gi|304328680|gb|EFL95901.1| ribonucleoside-diphosphate reductase subunit alpha [Pediococcus acidilactici DSM 20284] Length = 721 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 161/718 (22%), Positives = 299/718 (41%), Gaps = 82/718 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L K+ +A + L + E+ ++A L+ + DF + L + L Sbjct: 28 LHKDQEALAAFLKENVQANTKQFASLRERFDYLLEEDYIEAELMEKYSFDF-IEKLYDYL 86 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 + + ++ Y +Y L N + + + F RVAM E+ A++ + Sbjct: 87 RAQNFHFRSFMAAYKFYAQYALKTNDNEYYL-ENFVDRVAMNALYFGDGDEELAMQIADE 145 Query: 346 LSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+ +L SCFL DD+ I + L+K GG+G + Sbjct: 146 IIHQRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 T +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 206 TNLREAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + + + LFSP V ++ + + Sbjct: 266 AKKENADEKIRVKTLSLGVVVPDKFYELIKHDEDMYLFSPYSVEKVYGK-PYAYVDITKE 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ + EIK ++ + A + ++ + E+G+P++ D N +P G + SNL Sbjct: 325 YDNLVNNPEIKKYK-VKARNIENEISKLQQESGYPYVVNVDTANRENPIY--GKIVMSNL 381 Query: 585 CTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI + CNLGS N++ A ++ T VR L Sbjct: 382 CSEIMQVQTPSVIDNKQNYTELGTDISCNLGSTNIVNMMATPH-----FGKSVETMVRAL 436 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + + N IGLG MG L H+ Y P++VE ++ Sbjct: 437 TFVTDHSDIDVVPSIQHGNALAHTIGLGAMGLHGYLAKNHLYYGEPDSVEFTSVYFMLLN 496 Query: 692 FHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRL 744 + + AS ++A+ERG + +F+ S + G + + + ++ + Sbjct: 497 YWTLRASNKIAKERGQVFHNFEKSKYADGSYFDKYLAQDFGPKSARVKELFQGIDIPTTA 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W +LK+ V G+ + N MA+APT +I+ I + S+ P + + G Sbjct: 557 DWADLKQAVMQDGLYHQNRMAVAPTGSISYINDATASLQPIVNRVEERQEKKIGKIYYPA 616 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 +L N+ K + +A++ID +++ + Sbjct: 617 PYLSND-------------------------------TLKYYQSAYDIDMRKVVDIYAAA 645 Query: 864 QKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ +DQ S+ ++ ++ + + L+ + A G+K+ YY+R+ Sbjct: 646 QQHVDQGMSMTFFMRSTIPDGIYDWKNGRTNKMTTRDLNILRNYAHHEGIKSIYYIRT 703 >gi|30261451|ref|NP_843828.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus anthracis str. Ames] gi|50196926|ref|YP_052620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus anthracis str. 'Ames Ancestor'] gi|50082988|gb|AAT70128.1| ribonucleoside-diphosphate reductase, alpha subunit, group I intron-containing [Bacillus anthracis str. 'Ames Ancestor'] Length = 694 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A+E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|238750474|ref|ZP_04611975.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] gi|238711405|gb|EEQ03622.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia rohdei ATCC 43380] Length = 693 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 167/711 (23%), Positives = 293/711 (41%), Gaps = 75/711 (10%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + +EEG + + + Sbjct: 16 DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLDKYDFS 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + VA+ LA Sbjct: 63 FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 + A + + S F +TPT N G + +L SCFL + D++ I ++ L Sbjct: 120 NPQIARDLVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSINSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ + Sbjct: 240 AHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEDMYLFSP---YDVAQV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG + + + + ++ + KI A ++ + + FE+G+P++ F+D N +P Sbjct: 297 YGLPLSEISISEKYRELVDDKRIRKSKIKAREFFQVLAEIQFESGYPYMMFEDTVNRANP 356 Query: 573 QQHVGVVHSSNLCTEITLNSSSEET-------AVCNLGSINLLAHFANNQFDYDKLASTI 625 G ++ SNLC+EI +S E + S NL + + D +I Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYRHIGKDISCNLGSMNIAHTMDSPDFGKSI 414 Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V D+ + ++ +K N AIGLG M L I Y S EA++ + Sbjct: 415 ETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474 Query: 685 ESMEFISFHAISASVELAQERGAY-SSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735 + +HAI AS +LA ERG+Y F S + G + + + Sbjct: 475 IYFYTLVYHAIRASNQLAIERGSYFKGFDESDYASGRYFTKYTEQSWLPKTAKVQALFAK 534 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 ++ ++ W L++ V G+ N N A+ PT +I+ I + SI P + ++ Sbjct: 535 SGIHIPNQQDWATLRQSVMAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIEIRKEG 594 Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ N+ + + A++I P Sbjct: 595 KIGRVYYPAPYMTND-------------------------------NLEYYQDAYQIGPE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIYYIR 674 >gi|254386108|ref|ZP_05001422.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces sp. Mg1] gi|194344967|gb|EDX25933.1| ribonucleotide-diphosphate reductase alpha subunit [Streptomyces sp. Mg1] Length = 961 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 124/626 (19%), Positives = 224/626 (35%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 125 EIFEHELTYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 184 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 243 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DVE F++ + + R D + + V ++ Sbjct: 244 VDHPDVEAFIETKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDEFMTAVE 303 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G EF + +V K+ A AL+RK+ + P I + N Sbjct: 304 NGTEFGLRSRMT--------GEVIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTC 355 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G + +SN C+E + CNL S+NL+ N FD ++ A + Sbjct: 356 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLNDDGKGNQSFDAERFAKVVELV 411 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITS 471 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ A S ELA G Y + + A ++ + Sbjct: 472 LMTGTAYKRSAELAAIVGPYDGYARNADAHKRVMKQHADANATAPRTQDLDNTIWAAATE 531 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RNS +APT TI + ++P + + K G +V Sbjct: 532 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 591 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + G + + + + ++ A I M + Sbjct: 592 NGTVPQALRRLGYQEEQIEAIVTHIAEHGVVVDAPGLKTEHYEVFDCAMGERSISAMGHV 651 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + E + ++++ IY +AW MG+K R S Sbjct: 652 RMMAAIQPWISGAISKTVNMPETATVEEIEEIYFEAWKMGVKALAIYRDNCKVGQPLSAK 711 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 K + K T+ + Sbjct: 712 KKEEEKEEVTAKTEETIRAAVEKVIE 737 >gi|157955339|gb|ABW06048.1| NrdE [Bacillus thuringiensis serovar thuringiensis] Length = 694 Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I + S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAHESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++I+ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|227329867|ref|ZP_03833891.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 693 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 167/679 (24%), Positives = 279/679 (41%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +EEG + + + L + +LG Y Y L +G Sbjct: 40 EKLRYLVEEGYYEADVLDQYHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 99 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ L+ A + + S F +TPT N G + +L S Sbjct: 100 RYLERYEDRVCLVALTLS---KGDTALASALVDEIISGRFQPATPTFLNCGKKQRGELVS 156 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 157 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 216 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 217 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 276 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + N LFSP D+ +YG + + ++ + I A ++ + Sbjct: 277 QLAKNNQVMYLFSP---YDVEQVYGVPLSEISVTEKYHEMVNDKRIRKSQIKAREFFQIL 333 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P++ F+D N +P G ++ SNLC+EI S + Sbjct: 334 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNEASLYDDDLGYSHIGKD 391 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ A+ T+ A+R L V D+ + ++ +K N AI Sbjct: 392 ISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDQSHAI 446 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715 GLG M L I Y + EAV+ + ++FHAI AS LA E +S F+ S Sbjct: 447 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 506 Query: 716 WDQGVFPIDSIGLLAEV-----RDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + I E R+ ++ ++ W L++ V G+ N N A+ Sbjct: 507 YATGEYFDKYIEQRWEPTTARARELFEQSGIHIPTQQDWAALRESVIAHGIYNQNLQAVP 566 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 567 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND----------------- 609 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 610 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 655 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 656 NKAQIYAWTKGIKTIYYIR 674 >gi|94989857|ref|YP_597957.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10270] gi|94543365|gb|ABF33413.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10270] Length = 726 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 171/751 (22%), Positives = 304/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKHYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ +YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRVYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA ++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 +A AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC+ C Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724 >gi|304398690|ref|ZP_07380562.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] gi|304353901|gb|EFM18276.1| ribonucleoside-diphosphate reductase, alpha subunit [Pantoea sp. aB] Length = 712 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 165/720 (22%), Positives = 290/720 (40%), Gaps = 69/720 (9%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270 +Y + A L + ++ + + + F E Sbjct: 13 DYHALNAMLNLYDADGRIQFDKDREATRQFYLQHVQPNTVPFSSNAERLRYLVAESYYEA 72 Query: 271 ESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF----LHINGSRI-EMPQAFFMRVA 325 + + +D +L + + FE+ + Y +G R E + VA Sbjct: 73 DVLNQYDFDFLLELHEVAEKWGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVA 132 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + + +E + S F +TPT N G + +L SCFL + D++ I Sbjct: 133 LTLAQGDETLARALLE---EILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 189 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 190 RAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 249 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA +L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP Sbjct: 250 QGAGAVWLNAHHPDIFRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENRPMALFSP 309 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ +YG+ F + + + ++ + I ++ + + FE+G+P+I + Sbjct: 310 ---YDVERIYGQAFGDISISEKYDEMLADDRIRKTYIQPRDFFQTLAEIQFESGYPYIMY 366 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQF 616 +D N G ++ SNLC+EI +S+ E S NL + + Sbjct: 367 EDSVNR--SNPIAGRINMSNLCSEILQVNSASEYHDDLSYRRIGKDISCNLGSLNIAHAM 424 Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D LA T+ AVR L +V + ++ + N AIGLG M L I Y Sbjct: 425 DSRDLARTVDVAVRALTSVSMMSEIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGIAYG 484 Query: 676 SPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVR- 733 SPEA++ + I+++A+ S +LAQE + F S + GV+ + R Sbjct: 485 SPEALDFTNLYFYCITYYALRTSNQLAQEHQKTFEGFADSQYASGVYFDKYLQREWLPRT 544 Query: 734 -------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + + ++ W L+ V G+ N N AI PT +I+ I + SI P Sbjct: 545 ERVTTLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPIV 604 Query: 787 QNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + ++ +G F+ N + ++ Sbjct: 605 SPIEIRKEGKTGRVYYPAPFMTN-------------------------------ENLHLY 633 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+R Sbjct: 634 QDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYIR 693 >gi|157955383|gb|ABW06081.1| NrdE [Bacillus thuringiensis serovar sotto] Length = 694 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 164/712 (23%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++I+ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|116511804|ref|YP_809020.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. cremoris SK11] gi|116107458|gb|ABJ72598.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactococcus lactis subsp. cremoris SK11] Length = 722 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 175/717 (24%), Positives = 298/717 (41%), Gaps = 85/717 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E +T +K+ + +E Y + ++E E + L +L Sbjct: 32 KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149 Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+ R + SCFL + DD+ I + L+K GG+G + T +R Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V + LF P V YGK F E Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 ++ + I+A L +++ + E+G+P+I D N +P GV+ SNLC+E Sbjct: 327 KMVANPEIRKTPINARELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGS N+L ++ D+ +++ + VR L + Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSS----DEFGTSVESMVRALTFI 440 Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + + T+ +K N AIGLG MG S L I Y S EAVE ++++ Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500 Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSI---------GLLAEVRDELAMNRTSRL 744 + AS +LA E+GA + +F+ S + G + + + E+ +A+ + Sbjct: 501 LVASNKLAVEKGASFKNFEKSAYADGSYFDKYLTHDYFAAVSPKVQELFKGIAVPTIA-- 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W EL+ VKT G+ NS MA+AP +I+ I S SI P + + G Sbjct: 559 DWTELRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP- 617 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L E + + +A++ D +I+ + Sbjct: 618 --------AAGLATETI----------------------PYYKSAYDTDMRSVIDVYAAA 647 Query: 864 QKWIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+KT YY+R+ Sbjct: 648 TEHVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|15674554|ref|NP_268728.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes M1 GAS] gi|71910162|ref|YP_281712.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS5005] gi|13621660|gb|AAK33449.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus pyogenes M1 GAS] gi|71852944|gb|AAZ50967.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS5005] Length = 726 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 171/751 (22%), Positives = 303/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA ++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 +A AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYSDGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC+ C Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724 >gi|238790128|ref|ZP_04633905.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] gi|238721797|gb|EEQ13460.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia frederiksenii ATCC 33641] Length = 693 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 168/711 (23%), Positives = 292/711 (41%), Gaps = 75/711 (10%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 ++ AR + + + +K + +EEG + + E Sbjct: 16 DRLAARQYFLQHVNQNTVFFHNLQEKLDY-------------LVEEGYYEKEVLERYNFS 62 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETE 334 + L ++ +LG Y Y L +G R E + VA+ LA Sbjct: 63 FIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLAAG--- 119 Query: 335 KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAML 393 + A + ++S F +TPT N G +L SCFL + D++ I ++ L Sbjct: 120 NPQVARDLVEEMTSGRFQPATPTFLNCGKNQRGELVSCFLLRMEDNMESIGRSINSALQL 179 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 +K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA YL Sbjct: 180 SKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAGAVYLH 239 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+ FLD ++ D++ R ++ IPD+ + N LFSP D+ + Sbjct: 240 AHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---YDVELV 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSP 572 YG + + + + ++ + KI A ++ + + FE+G+P++ F+D N +P Sbjct: 297 YGVPMSEISISEKYREMVDDKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTVNRANP 356 Query: 573 QQHVGVVHSSNLCTEITLNSSSEE-------TAVCNLGSINLLAHFANNQFDYDKLASTI 625 G ++ SNLC+EI +S E + S NL + + D +I Sbjct: 357 I--KGRINMSNLCSEILQVNSPTEYNDDLSYHHIGKDISCNLGSLNIAHTMDSPDFGKSI 414 Query: 626 RTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 TA+R L V D+ N ++ +K N AIGLG M L I Y S EA++ + Sbjct: 415 ETAIRGLTAVSDMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEALDFTN 474 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DE 735 + +HAI AS LA ER + F S + G + + + + + Sbjct: 475 IYFYTVVYHAIRASNLLAIERGSHFKGFDESDYASGRYFTKYVEQSWQPKTAKVQALFAK 534 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNM 795 + ++ W++L+ V G+ N N AI PT +I+ I + SI P + ++ Sbjct: 535 SGIAIPNQQDWEKLRNSVMEHGIYNQNLQAIPPTGSISYINHSTSSIHPIVSPIEIRKEG 594 Query: 796 S-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G ++ N + + + A++I P Sbjct: 595 KIGRVYYPAPYMTN-------------------------------ENLEYYQDAYQIGPE 623 Query: 855 WLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 624 KIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWQKGIKTIYYIR 674 >gi|238796651|ref|ZP_04640157.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] gi|238719382|gb|EEQ11192.1| Ribonucleoside-diphosphate reductase subunit alpha [Yersinia mollaretii ATCC 43969] Length = 693 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 163/656 (24%), Positives = 279/656 (42%), Gaps = 65/656 (9%) Query: 275 DFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVAMGLA 329 +D ++ + + Y + F F +LG Y Y L +G R E + VA+ LA Sbjct: 58 QYDFSFIKSLFQQAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALTLA 117 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQ 388 + A E + S F +TPT N G + +L SCFL + D++ I ++ Sbjct: 118 AG---NPQLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNMESIGRSIN 174 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L+K GG+ + +R +GA I +S GVIP +K+ D NQ G R+GA Sbjct: 175 SALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQLGARQGAG 234 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL H D+ FLD ++ D++ R ++ IPD+ + N LFSP Sbjct: 235 AVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKNNEEMYLFSP---Y 291 Query: 509 DLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPC 567 D+ +YG + + + ++ + KI A ++ + + FE+G+P++ F+D Sbjct: 292 DVEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQILAEIQFESGYPYMMFEDTV 351 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDK 620 N +P G ++ SNLC+EI +S E S NL + + D Sbjct: 352 NRANPI--KGRINMSNLCSEILQVNSPTEYNDDLSYRQIGKDISCNLGSLNIAHTMDSPD 409 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +I TA+R L V D+ + ++ +K N AIGLG M L I Y S EA Sbjct: 410 FGKSIETAIRGLTAVSDMSHIRSVPSIEKGNQESHAIGLGQMNLHGYLARERIFYGSEEA 469 Query: 680 VEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR----- 733 ++ + +++HAI AS LA ER + F S + G + + + + Sbjct: 470 LDFTNIYFYTVAYHAIRASNLLAIERGCHFKGFDESTYASGSYFTKYVEQRWQPKTAKVQ 529 Query: 734 ---DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLY 790 + ++ + W L++ V G+ N N A+ PT +I+ I + SI P + Sbjct: 530 ALFADAGIHIPDQQDWAALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSPIE 589 Query: 791 VKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 ++ G ++ N+ + + A+ Sbjct: 590 IRKEGKIGRVYYPAPYMTND-------------------------------NLEYYQDAY 618 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 +I P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+R Sbjct: 619 QIGPEKIIDTYAEATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKRGIKTIYYIR 674 >gi|319406096|emb|CBI79726.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella sp. AR 15-3] Length = 716 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 171/689 (24%), Positives = 283/689 (41%), Gaps = 66/689 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ V+ + + +D ++ K F F +LG Sbjct: 48 LQHVNQNTVFFHNLKEKIDYLVEENYYERELFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + RV + + A + + + F +TP Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGIKGLAEGLVDEIITGRFQPATP 164 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL V D++ I ++ L+K GG+ T +R GA I Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 224 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 ++ GV+P +K+ D NQ G R+GA YL H+D+ +FLD ++ D++ R Sbjct: 225 KIENQASGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKIR 284 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFS D+ + GK F ++ K Sbjct: 285 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNSK 341 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 + +KISA ++ + + FE+G+P+I F+D N +P G + SNLCTEI Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEA 399 Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646 + AV N S NL + + D T+ AVR L V D+ N + Sbjct: 400 SELDTDLTYRAVGNDISCNLGSMNIAKAMESDNFGRTVEIAVRALTAVSDMSNIACVPSI 459 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER- 705 K N AIGLG M L I Y + EA++ + +++HA+ AS +A+ER Sbjct: 460 AKGNAESHAIGLGQMNLHGFLAREKIYYGTLEAIDFTNIYFYTVTYHALRASNLIARERK 519 Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRL--------PWDELKKRVKTIG 757 + F+ S + G F I + + EL +R W ELK+ V G Sbjct: 520 KMFVGFEKSAYADGHFFTKYIEKEWKPQFELVQELFTRNNIVIPNQRDWQELKQLVAQYG 579 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816 + N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 580 LYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 632 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + A+EI P +I++ + + +DQ SL L+ Sbjct: 633 ------------------------NLEFYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLF 668 Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + ++ AW G+K+ YY+R Sbjct: 669 FPDTATTRDINRAQIYAWKKGIKSIYYVR 697 >gi|229189533|ref|ZP_04316549.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus ATCC 10876] gi|228593978|gb|EEK51781.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus ATCC 10876] Length = 682 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|300362787|ref|ZP_07058961.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus gasseri JV-V03] gi|300353077|gb|EFJ68951.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus gasseri JV-V03] Length = 626 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 171/652 (26%), Positives = 288/652 (44%), Gaps = 69/652 (10%) Query: 296 LGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 +G Y Y L N ++ +E + R M E+ A+ + S F Sbjct: 1 MGAAKFYKAYALKTNDNKQFLERFED---RAVMNALFLADGNEELALNLVKDIISNRFQP 57 Query: 354 STPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T +R LGA Sbjct: 58 ATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGA 117 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I S G+IP +K+ D+ NQ G+R+GA YL H + +FLD ++ D+ Sbjct: 118 PIKKMKNLSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADE 177 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 + R ++ IPD+ + +N LFSP D+ YGK E Q Sbjct: 178 KVRIKSLSLGVVIPDITFELAKENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLN 234 Query: 533 EIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 + + ISA ++ + + FE+G+P+I ++D N R+PQ+ +G + SNLC+EI Sbjct: 235 NPCIKKTFISARKFFQTIAEVQFESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQV 294 Query: 592 SSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DI 638 ++ CNLGS+N+ A + DKL + +V+ L+ V Sbjct: 295 NTPSTYNEDLSFNKTGYDVCCNLGSLNIAAAMNSA----DKLGGLVSDSVQALNRVARSS 350 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +K N +RAIGLG M L HI Y SPEAVE I++HA S Sbjct: 351 DLDCAPSIEKGNKANRAIGLGAMNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKES 410 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELK 750 +LA++ GA+ FK S + G + I + E+ + + ++ W+EL Sbjct: 411 NKLAEKYGAFKGFKDSSYASGDYFKKFIDEEVSPKTDKIKEIVAKYKLVLPTKEDWEELI 470 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 ++K G+ N+N +A+APT +I+ + + S+ P + + V ++ Sbjct: 471 TKIKKTGIANANLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY----- 525 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQ 869 +I D + + A+E+ P +I+ + QK++DQ Sbjct: 526 -------------------------KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQ 560 Query: 870 AQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA--TSVEKSTLKG 918 + SL L++++ + + L+ Y A+ + YY+R R E T Sbjct: 561 SISLTLFVEDNATTRDLNKAYIYAFKKRCNSIYYVRIREKVLAGSENLTADE 612 >gi|157955367|gb|ABW06069.1| NrdE [Bacillus thuringiensis serovar galechiae] Length = 694 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 164/712 (23%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++I+ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDINQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|50913720|ref|YP_059692.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10394] gi|50902794|gb|AAT86509.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10394] Length = 726 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 172/751 (22%), Positives = 305/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKDAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP ++ YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSPYDIKC---AYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA L++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG+M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVEAGNAANHAVGLGVMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 HA AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 HAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC+ C Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724 >gi|94987983|ref|YP_596084.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS9429] gi|94991865|ref|YP_599964.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS2096] gi|94541491|gb|ABF31540.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS9429] gi|94545373|gb|ABF35420.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS2096] Length = 726 Score = 302 bits (772), Expect = 3e-79, Method: Composition-based stats. Identities = 173/751 (23%), Positives = 304/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ +YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRVYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA L++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 HA AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 HAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC C Sbjct: 707 LVTAPGASDETTT-------------ECHSC 724 >gi|319404591|emb|CBI78197.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella rochalimae ATCC BAA-1498] Length = 716 Score = 302 bits (772), Expect = 3e-79, Method: Composition-based stats. Identities = 172/689 (24%), Positives = 285/689 (41%), Gaps = 66/689 (9%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ ++ + + + +D ++ K F F +LG Sbjct: 48 LQHVNQNTVFFHNLKEKIDYLIEEKYYERELFELYDFSFVKKLFKRAYAFKFRFPTFLGA 107 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + RV + + A + + + F +TP Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RVCLVALYLAQGSKSLAEGLVDEIITGRFQPATP 164 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL V D++ I ++ L+K GG+ T +R GA I Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALCLTNLREAGAPIK 224 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GV+P +K+ D NQ G R+GA YL H+D+ +FLD ++ D++ R Sbjct: 225 KIENQSSGVLPVMKMLEDVFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFS D+ + GK F ++ K Sbjct: 285 IKTLSLGVIIPDITFELARNNEDMYLFSS---YDIEQVTGKPFSDISLTEHYRSFVDNSK 341 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--- 591 + +KISA ++ + + FE+G+P+I F+D N +P G + SNLCTEI Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTVNRANPI--AGRISMSNLCTEILQVSEA 399 Query: 592 ----SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKA 646 + AV N S NL + + D T+ AVR L V D+ N + Sbjct: 400 SELETDLTYRAVGNDISCNLGSMNIAKAMESDNFGRTVEIAVRALTAVSDMSNIACVPSI 459 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 K N AIGLG M L I Y +PEA++ + +++HA+ AS +A+ER Sbjct: 460 AKGNAESHAIGLGQMNLHGFLAREKIYYGTPEAIDFTNIYFYTVTYHALRASNLIARERK 519 Query: 707 A-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKRVKTIG 757 + F+ S + G F I + + EL +R W ELK+ V G Sbjct: 520 EVFVGFEKSAYADGHFFTKYIEKEWKPQFELVQKLFTRNNIVIPNQKDWQELKQLVAQYG 579 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLW 816 + N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 580 LYNRYLQAVPPTGSISYINYATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT------- 632 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + A+EI P +I++ + + +DQ SL L+ Sbjct: 633 ------------------------NLEFYQDAYEIGPEKIIDTYAVATQHVDQGLSLTLF 668 Query: 877 LDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + ++ AW G+K+ YY+R Sbjct: 669 FPDTATTRDINRAQIYAWKKGIKSLYYVR 697 >gi|291618544|ref|YP_003521286.1| NrdE [Pantoea ananatis LMG 20103] gi|291153574|gb|ADD78158.1| NrdE [Pantoea ananatis LMG 20103] Length = 712 Score = 302 bits (772), Expect = 3e-79, Method: Composition-based stats. Identities = 172/721 (23%), Positives = 301/721 (41%), Gaps = 71/721 (9%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270 +Y + A L + ++ + + ++F E Sbjct: 13 DYHALNAMLNLYDADGRIQFDKDQQAARQFVIQHVQPNTQHFASIAERLRYLVAEGYYEA 72 Query: 271 ESMMDFDLVYLANDLKYERD---FAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRV 324 + +D ++ L E D FAF +LG Y Y L +G R E + V Sbjct: 73 SVLNQYDFNFVCG-LHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFEQRACMV 131 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGI 383 A+ LA + + +E + S F +TPT NSG + +L SCFL + D++ I Sbjct: 132 ALTLAQGDETLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIEDNMESI 188 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G Sbjct: 189 GRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGA 248 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA +L H D+ FLD ++ D++ R ++ IPD+ + +N LFS Sbjct: 249 RQGAGAVWLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQPMALFS 308 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWIT 562 P D+ +YG+ F + + + ++ + I ++ + + FE+G+P+I Sbjct: 309 P---YDVERIYGQAFGDISISEKYAEMLADDRIRKTYIQPRDFFQTLAEIQFESGYPYIM 365 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQ 615 ++D N G ++ SNLC+EI +S+ E S NL + + Sbjct: 366 YEDSVNR--DNPIAGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGSLNIAHA 423 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D LA T+ TA+R L V D+ + ++ + N AIGLG M L I Y Sbjct: 424 MDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLAREGITY 483 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 SPEA++ + ++++A+ AS +LA+E + + F S + G + + + R Sbjct: 484 GSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQSDWQPR 543 Query: 734 --------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 + ++ W L++ V G+ N N AI PT +I+ I + SI P Sbjct: 544 TARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHATSSIHPI 603 Query: 786 YQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + ++ +G F+ N+ ++ Sbjct: 604 VSRIEIRKEGKTGRVYYPAPFMTND-------------------------------NLEL 632 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 + A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+ Sbjct: 633 YQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYI 692 Query: 904 R 904 R Sbjct: 693 R 693 >gi|163867488|ref|YP_001608687.1| ribonucleotide-diphosphate reductase subunit alpha [Bartonella tribocorum CIP 105476] gi|161017134|emb|CAK00692.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bartonella tribocorum CIP 105476] Length = 716 Score = 302 bits (772), Expect = 3e-79, Method: Composition-based stats. Identities = 174/694 (25%), Positives = 289/694 (41%), Gaps = 76/694 (10%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAF---EYLGL 298 H ++ I+ ++ +++ + +D ++ K F F +LG Sbjct: 48 LQHVNQNTVFFHNLKEKIDYLIEEGYYEKALFELYDFSFIKKLFKRAYAFKFRFPTFLGA 107 Query: 299 QILYDRYFLH-INGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y L +G R E + R+ + + A F + + + F +TP Sbjct: 108 FKYYTSYTLKTFDGKRYLERYED---RICLVSLYLAQGNKALAESFVDEIITGRFQPATP 164 Query: 357 TLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+G + +L SCFL V D++ I A+ L+K GG+ T +R GA I Sbjct: 165 TFLNAGKKQRGELVSCFLLRVEDNMESIGRAVNSALQLSKRGGGVALCLTNLREAGAPIK 224 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 +S GV+P +K+ D+ NQ G R+GA YL H+D+ +FLD ++ D++ R Sbjct: 225 QIENQSSGVLPVMKLLEDSFSYANQLGARQGAGAVYLHAHHLDIMKFLDTKRENADEKVR 284 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ IPD+ + N LFS D+ + GK F ++ K Sbjct: 285 IKTLSLGVVIPDITFELARNNEDMYLFSS---YDIERVTGKPFSDISLTEHYRSFVDNAK 341 Query: 536 VF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + +KISA ++ + + FE+G+P+I F+D N G + SNLC+EI S + Sbjct: 342 IRKKKISARVFFQTLAEIQFESGYPYILFEDTANR--SNPIAGRISMSNLCSEILQVSEA 399 Query: 595 EE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCH 641 E CNLGS+N+ + T+ +AVR L V D+ N Sbjct: 400 SELETDLTYRTIGSDISCNLGSMNIAKAMESP-----DFGQTVESAVRALTAVSDMSNIA 454 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + K N AIGLG M L I Y SPEA++ + +++HAI S + Sbjct: 455 CVPSIAKGNAESHAIGLGQMNLHGFLAREQIYYGSPEAIDFTNIYFYIVTYHAIRVSNLI 514 Query: 702 AQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR--------LPWDELKKR 752 A+E + ++ F+ S + G F I + + L +R W ELKKR Sbjct: 515 ARERQEMFAGFEKSAYADGRFFEKYIEKEWKPQFALVQELFARNNIVIPDQKDWQELKKR 574 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELK 811 V G+ N N A+ PT +I+ I + SI P + ++ G ++ N Sbjct: 575 VIKYGLYNRNLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRVYYPAPYMDNT-- 632 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + A+EI P +I++ + + +DQ Sbjct: 633 -----------------------------NLNFYQDAYEIGPEKIIDTYAAATQHVDQGL 663 Query: 872 SLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 SL L+ + + + ++ AW G+K+ YY+R Sbjct: 664 SLTLFFPDTATTRDINRAQIYAWKKGIKSIYYVR 697 >gi|269850295|gb|AAP25314.2| ribonucleoside-diphosphate reductase, alpha subunit, group I intron-containing [Bacillus anthracis str. Ames] Length = 694 Score = 302 bits (772), Expect = 3e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVHFNSVAERMEYMKEHDYYYNVLDEYNLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVAKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDSKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A+E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|209558900|ref|YP_002285372.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes NZ131] gi|209540101|gb|ACI60677.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Streptococcus pyogenes NZ131] Length = 726 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 173/751 (23%), Positives = 304/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT NSG + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA L++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 +A AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYTYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC+ C Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724 >gi|312114419|ref|YP_004012015.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodomicrobium vannielii ATCC 17100] gi|311219548|gb|ADP70916.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Rhodomicrobium vannielii ATCC 17100] Length = 762 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 150/658 (22%), Positives = 251/658 (38%), Gaps = 97/658 (14%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFN 360 + +G + + F RVA AL E E ++ F + ++ F F+ + L Sbjct: 13 KYRYTPAHGEPEQSVEETFARVARAAALAEQEASQKDWEKRFLDAMADFAFIPAGRILAG 72 Query: 361 SGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 +GT L +CF+ + DD+ IF ++E A+ + GG+G+D++ +R GA + G Sbjct: 73 AGTGRDVTLFNCFVMGEIGDDMGSIFAHVREAALTLQQGGGIGHDFSTLRPKGAPVKGVG 132 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 + G + F+ V + + G R+GA+ L H D+E F++ + D R + Sbjct: 133 ADASGPVSFMDVWDAMCRTIMSAGSRRGAMMGTLRCDHPDIEAFIEAKA----DPARLRN 188 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 N + + D FM+ V +A W L E VFR Sbjct: 189 FNLSVLVTDAFMEAVKADARWPLTF-----------------------------EGTVFR 219 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 ++SA LW K++ ++ P + F D N + + ++N C E L Sbjct: 220 EVSARGLWLKIMRSAYDYAEPGVIFIDRVNAANNLAWCETISATNPCGEQPLPPY----G 275 Query: 599 VCNLGSINLLAHFANNQF-----DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGSINL A D +L + AVR+LDN+ID++ + + ++ Sbjct: 276 ACLLGSINLAALIEKPFEPEARLDEARLERLVPVAVRLLDNIIDVSRYPLPSQEREAKAK 335 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R IGLG+ G AL Y +A M IS A AS LA+E+GA+ F Sbjct: 336 RRIGLGVTGLADALIFCGAHYGEESGRALAASWMARISELAYEASAALAKEKGAFPLFDA 395 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + L+K ++ G+RN +IAPT TI+ Sbjct: 396 --------------------EAFLARPFPASLPPPLQKAIRQHGIRNGVLTSIAPTGTIS 435 Query: 774 NICGV-SQSIDPSYQNLYVKSNM----SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 + G S ++P + + + + S V + V ++R Sbjct: 436 LLAGNVSSGVEPVFDFEFSRRVLQPDGSARHETVEDYAVRIFRER--------------Q 481 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 GS + L A E+ P +E + Q+ +D + S + + + Sbjct: 482 GS--------EPLPPAFVAARELTPAQHLEMQAALQRHVDASISKTVNCPASIPFEDFEM 533 Query: 888 IYRQAWLMGLKTTYYLRSRSATS---VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 +Y A+ +GLK R + T ST + + IP Sbjct: 534 LYADAYRLGLKGCTAYRPNAVTGEVLTPASTEEPPAQPALPLAAAVAREGHSIEPIPR 591 >gi|302537351|ref|ZP_07289693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. C] gi|302446246|gb|EFL18062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. C] Length = 960 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 125/626 (19%), Positives = 227/626 (36%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ V D + I +E M+ Sbjct: 125 EIFEHELTYALLHQIFSFNSPVWFNVGTPQPQQVSACFILAVDDSMESILDWYKEEGMIF 184 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 243 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DVE+F+ + + R D + + + ++D Sbjct: 244 VDHPDVEDFIATKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 297 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E E R GE V K+ A AL+RK+ + P I + N Sbjct: 298 FMTAVENGTEFGLRARMTGE--VIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTC 355 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G + +SN C+E + CNL S+NL+ N FD ++ A + Sbjct: 356 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLNDDGKGNQSFDAERFAKVVELV 411 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRTLAASITS 471 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRL 744 ++ A S ELA G Y + + A ++ + Sbjct: 472 LMTGTAYKRSAELAAIVGPYDGYARNADSHKRVMKQHADANAVAPRTEDLDNAIWAAATE 531 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RN+ +APT TI + ++P + + K G +V Sbjct: 532 AWQDVLRLGEKNGFRNAQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 591 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + G++ + + + ++ A I PM + Sbjct: 592 NGTVPQALRRMGYLEEQIEAIVSHIAEHGNVVDAPGLKTEHYEVFDCAMGERSISPMGHV 651 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + E + ++++ IY +AW +G+K R S Sbjct: 652 RMMAAIQPWISGAISKTVNMPESATVEEIEEIYFEAWKLGVKALAIYRDNCKVGQPLSAK 711 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 K + K + T + Sbjct: 712 KKEEEKAEITEKAEETIRTAVEKVIE 737 >gi|327478741|gb|AEA82051.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri DSM 4166] Length = 716 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 142/650 (21%), Positives = 257/650 (39%), Gaps = 63/650 (9%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTL 358 +G+ I + + RVA LA E ++E F L + + + Sbjct: 30 QKYRLSSKDGTPIDQTVDDTWQRVARALADVEPAKQREHWYERFLWALRNGAI-PAGRII 88 Query: 359 FNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 N+G + + +C ++ ++ D + I G + E + K G+G +++ +R G+ Sbjct: 89 SNAGAQDYKPATSTINCTVSGSITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSF 148 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + G + G + F+ + + V+ G R+GA + H DV EF+ ++ + Sbjct: 149 VSGAGAHTSGPLSFMDIFDKMCFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKR----ED 204 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENY 525 R N + I D FM+ V + W L P D + +E+ + Sbjct: 205 GRLRQFNLSLLITDEFMQTVEADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYI 264 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 R K++ ++ A LW ++ ++ P D N + + ++N C Sbjct: 265 VRDDGLVACKIYGRVKARHLWDMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPC 324 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINC 640 E L C LGSINL + FD+DK +R R+LDNV++IN Sbjct: 325 GEQPLPPY----GSCLLGSINLTHFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEING 380 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+ + + R G+G +G S L LL + Y SPEA +E ++ ++E Sbjct: 381 LPLEQQRHEIESKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALE 440 Query: 701 LAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------D 747 L++E+G + L + D + ++ + + SR Sbjct: 441 LSKEKGPAPLLSQNFEVTAEMLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAP 500 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN-----MSGDFT 800 +L + + G R ++ +IAPT TI+ S I+PS+ + Y ++ + + Sbjct: 501 DLIEALAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIRPGRKAKEKI 560 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 V S+ L R L + + GS + + L TA ++ P ++ Sbjct: 561 EVFSY--ELLAYRTLINA------RAKPGS----DEPGEKLPDYFITADDVSPTQHVDIQ 608 Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + QKW+D + S + + + IYR AW GLK R A Sbjct: 609 AAAQKWVDSSISKTANVPTDYPFEAFKDIYRYAWRQGLKGCTTFRFNPAA 658 >gi|315654124|ref|ZP_07907040.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus iners ATCC 55195] gi|315488820|gb|EFU78466.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus iners ATCC 55195] Length = 725 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 183/754 (24%), Positives = 310/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ D + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMD----DSEHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTANIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I + K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNTNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|21909839|ref|NP_664107.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS315] gi|28896466|ref|NP_802816.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes SSI-1] gi|71903002|ref|YP_279805.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS6180] gi|139474320|ref|YP_001129036.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes str. Manfredo] gi|21904025|gb|AAM78910.1| putative ribonucleoside-diphosphate reductase large chain [Streptococcus pyogenes MGAS315] gi|28811717|dbj|BAC64649.1| putative ribonucleoside diphosphate reductase, large chain [Streptococcus pyogenes SSI-1] gi|71802097|gb|AAX71450.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS6180] gi|134272567|emb|CAM30833.1| ribonucleoside-diphosphate reductase alpha subunit [Streptococcus pyogenes str. Manfredo] Length = 726 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 171/751 (22%), Positives = 303/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA ++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 +A AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC+ C Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724 >gi|260662381|ref|ZP_05863276.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] gi|260553072|gb|EEX26015.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] Length = 721 Score = 301 bits (771), Expect = 4e-79, Method: Composition-based stats. Identities = 169/732 (23%), Positives = 290/732 (39%), Gaps = 105/732 (14%) Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314 + + + + + + L ++ ++G Y +Y + N + + Sbjct: 58 AKLVADDYLDGAVLDQYPAEFIDQLEARVRAHHFRFKSFMGAYKFYTQYAMKTNDGKRFL 117 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E RV ++ A + + L + + +TPT N+G + Q+ SCFL Sbjct: 118 EDYND---RVVANALYLARGDQQLAKDLTDELINQRYQPATPTFLNAGKKRRGQMVSCFL 174 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + I AL L++ GG+G + + +R G I S GV+P +K+ D Sbjct: 175 IDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVLPVMKLLED 234 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 NQ G+R GA YL +H D+ FL+ +K D++ R ++ +PD + + + Sbjct: 235 AFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKENADEKIRVKTLSLGLVVPDKYYQLL 294 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 NA LFSP +V + + Y+R IK ISA L +K+ + Sbjct: 295 KSNAPMYLFSPYDVE-RELKTPFSYVDLTKEYDRLVANPRIKKT-AISARELEQKISRLQ 352 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606 E+G+P+I D N +P G + SNLC+EI V S N Sbjct: 353 QESGYPYILNIDHANRDNPV--AGKIIMSNLCSEILQPQEPSTLTSDLSYETVGTDISCN 410 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 L + +N + AVR L NV D N + K N + IGLG MG + Sbjct: 411 LGSTNIDNMLQAPDFGRAVEVAVRALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHT 470 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724 AL I Y SPEA+E + ++++++ AS ++A+ER ++ FK S + G + D Sbjct: 471 ALARRQIEYGSPEALEFTEAYFLALNYYSLLASHQIAKERDETFAGFKDSRYADGSYFDD 530 Query: 725 SIG-----LLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + + R + ++ + W LK+ V+T G+ + N +A+AP +I+ + Sbjct: 531 YVTKPFTLKFEKNRAAFSGVHLPTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNET 590 Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S S+ P Q + + N G +L N Sbjct: 591 SASLTPITQLVEQRQENKVGALFYPAPYLSN----------------------------- 621 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPS 881 + + A+++D +I++ + QK +DQ SL L++ + + Sbjct: 622 --ETLPYYTPAYDLDQRKIIDTYAVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMT 679 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 + L+ + AW G+K+ YY+R+ T N Sbjct: 680 TRDLNRLRNYAWTKGIKSLYYIRT--------FTTDDEIHTAN----------------- 714 Query: 942 SSCTSDTECEVC 953 ECE C Sbjct: 715 -------ECESC 719 >gi|227515315|ref|ZP_03945364.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227086329|gb|EEI21641.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|299783627|gb|ADJ41625.1| Ribonucleoside-diphosphate reductase [Lactobacillus fermentum CECT 5716] Length = 721 Score = 301 bits (771), Expect = 4e-79, Method: Composition-based stats. Identities = 169/732 (23%), Positives = 290/732 (39%), Gaps = 105/732 (14%) Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314 + + + + + + L ++ ++G Y +Y + N + + Sbjct: 58 AKLVADDYLDGAVLDQYPAEFIDQLEARVRAHHFRFKSFMGAYKFYAQYAMKTNDGKRFL 117 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E RV ++ A + + L + + +TPT N+G + Q+ SCFL Sbjct: 118 EDYND---RVVANALYLARGDQQLAKDLTDELINQRYQPATPTFLNAGKKRRGQMVSCFL 174 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + I AL L++ GG+G + + +R G I S GV+P +K+ D Sbjct: 175 IDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVLPVMKLLED 234 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 NQ G+R GA YL +H D+ FL+ +K D++ R ++ +PD + + + Sbjct: 235 AFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKENADEKIRVKTLSLGLVVPDKYYQLL 294 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 NA LFSP +V + + Y+R IK ISA L +K+ + Sbjct: 295 KSNAPMYLFSPYDVE-RELKTPFSYVDLTKEYDRLVANPRIKKT-AISARELEQKISRLQ 352 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606 E+G+P+I D N +P G + SNLC+EI V S N Sbjct: 353 QESGYPYILNIDHANRDNPV--AGKIIMSNLCSEILQPQEPSTLTSDLSYETVGTDISCN 410 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 L + +N + AVR L NV D N + K N + IGLG MG + Sbjct: 411 LGSTNIDNMLQAPDFGRAVEVAVRALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHT 470 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID 724 AL I Y SPEA+E + ++++++ AS ++A+ER ++ FK S + G + D Sbjct: 471 ALARRQIEYGSPEALEFTEAYFLALNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDD 530 Query: 725 SIG-----LLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + + R + ++ + W LK+ V+T G+ + N +A+AP +I+ + Sbjct: 531 YVTKPFTLKFEKNRAAFSGVHLPTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNET 590 Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S S+ P Q + + N G +L N Sbjct: 591 SASLTPITQLVEQRQENKVGALFYPAPYLSN----------------------------- 621 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPS 881 + + A+++D +I++ + QK +DQ SL L++ + + Sbjct: 622 --ETLPYYTPAYDLDQRKIIDTYAVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMT 679 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 + L+ + AW G+K+ YY+R+ T N Sbjct: 680 TRDLNRLRNYAWTKGIKSLYYIRT--------FTTDDEIHTAN----------------- 714 Query: 942 SSCTSDTECEVC 953 ECE C Sbjct: 715 -------ECESC 719 >gi|332800125|ref|YP_004461624.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Tepidanaerobacter sp. Re1] gi|332697860|gb|AEE92317.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Tepidanaerobacter sp. Re1] Length = 1225 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 124/505 (24%), Positives = 206/505 (40%), Gaps = 79/505 (15%) Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 R+GA L H D+ +F+ +K D +++ A I D FM+ + ++ Sbjct: 615 FISHNTRRGANMGILRVDHPDILDFIQCKK--NDKEITNFNISVA--ITDKFMEALKEDG 670 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 + L P K K+ A ++ ++ M + G Sbjct: 671 NYDLIDPHT---------------------------KKPTGKLRAREVFDLIVDMAWNNG 703 Query: 558 HPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN---- 613 P I F D N +P +G + S+N C E L CNLGSINL Sbjct: 704 EPGIVFIDRMNEDNPTPEIGDIESTNPCGEQPLLPY----ESCNLGSINLAKFIKKSGNK 759 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIP 673 N DY+ L T+ AVR LD+VID+N + +++ ++ +R IGLG+MGF L L IP Sbjct: 760 NTIDYESLKETVHLAVRFLDDVIDVNLYPLKEIEEMTKANRKIGLGVMGFADMLIELGIP 819 Query: 674 YASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR 733 Y S EAV+ A+ M FI + +AS ELA+ERG + +++ S++ + I + Sbjct: 820 YNSDEAVKTAEAIMSFIDSESKNASCELAKERGVFPNWEKSIYKEKGMRIRNATTTTIAP 879 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + I GVS I+P + + + Sbjct: 880 TGTI-----------------------------------SIIAGVSSGIEPIFALAFERH 904 Query: 794 NMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 M V+ LK++ L+ E ++ + G++ I+ +P ++K++ TA +I Sbjct: 905 VMDNQRLVEVHPIFKQVLKEQGLYSEELMQKVVT-QGTLQGIDELPKEIKRVFVTAHDIK 963 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 P W I+ + QK+ D A S + + + + +Y A+ +G K R S Sbjct: 964 PEWHIKMQAAFQKYTDNAVSKTVNFPNSATREDVKTVYMMAYNLGCKGVTIYRDGSRQEQ 1023 Query: 912 E--KSTLKGVDGKLNAVPVTDPNSS 934 K T K + P P+ + Sbjct: 1024 VLNKGTKKERPARYKIKPRPRPSVT 1048 Score = 97.6 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 292 AFEYLGLQILYDRYFLHIN-GSRIEMPQAFFMRVAMGLALKETEKEK-----RAVEFYNL 345 +L RY + G IE P+ RV+ +A E + + A +FY++ Sbjct: 7 NLTENARVVLEKRYLAKDSSGKVIETPETLIERVSNAIAKAELKYVQDKSDDWAKKFYDM 66 Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 +S F+ ++PTL N+G QLS+CF+ V D + GIF +++ +A++ K GG G ++ Sbjct: 67 ISELKFLPNSPTLMNAGRELGQLSACFVLPVEDSMEGIFDSIKSSALIHKSGGGTGFSFS 126 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 +R GA + T G + G I F+KV N AV QG Sbjct: 127 RLRPKGAMVKSTGGVASGPISFMKVFNAATEAVKQG 162 >gi|332686051|ref|YP_004455825.1| ribonucleotide reductase of class Ib (aerobic), subunit alpha [Melissococcus plutonius ATCC 35311] gi|332370060|dbj|BAK21016.1| ribonucleotide reductase of class Ib (aerobic), alpha subunit [Melissococcus plutonius ATCC 35311] Length = 720 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 161/715 (22%), Positives = 289/715 (40%), Gaps = 84/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + ++ +H+ M F + L L ++ Sbjct: 32 KEALEAFFKENVLPNTKIFPSIEAKINFLIENDYLEVDFIHKYSMSF-IESLYTFLMEQK 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N + E + RVA E+ A+ + + Sbjct: 91 FQFQSFMAAYKFYSQYALKTNDGTMYLESYED---RVAFNALYFADGNEELAITLADEMI 147 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G + +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGKKRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R A I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+E FL + Sbjct: 208 LREASAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIERFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + N LFSP V YG F E Sbjct: 268 KENADEKIRVKTLSLGILIPDKFYELTCNNEEMYLFSPYSVEKE---YGIPFSYVDITKE 324 Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + KI+A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 325 YDQLVENPKIHKYKINARELENEISKLQQESGYPYVINIDTANKNNPV--DGKIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + E CNLGS N++ + ++ R L Sbjct: 383 SEILQVQTPSILNDKQEYEVLGEDISCNLGSTNIVNLMESP-----DFGKSVCAMTRALT 437 Query: 634 NVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 + D + + + N + IGLG MG + L I Y S E++E +++ Sbjct: 438 YITDSSFIEVVPSIQNGNQHNHTIGLGAMGLHTFLAKNQITYGSKESIEFTTIYFMLLNY 497 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLP 745 + S ++A+ER + F+ S + G + D + A+++ + + Sbjct: 498 WTLVESNKIAKERQQVFHRFEYSDYADGSYFSKYLTGDFLPKSAKIKGLFKDIFIPAVED 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W +L+ V+ G+ + N +A+AP +I+ I S S+ P Q + + +G Sbjct: 558 WQQLRDAVQKDGLYHQNRLAVAPNGSISYINDTSASLHPITQLIEERQEKKTGKIYYPAP 617 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L N IP + +A+++D +I+ + Q Sbjct: 618 SLSN--------------------------TTIP-----YYTSAYDMDMRKVIDVYAAAQ 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + IDQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 647 QHIDQGMSLTLFMRSEIPEGLYEWKKTTKQTTRDLTILRHYAFNKGIKSIYYVRT 701 >gi|32491359|ref|NP_871613.1| ribonucleotide-diphosphate reductase subunit alpha [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166566|dbj|BAC24756.1| nrdE [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 704 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 179/714 (25%), Positives = 294/714 (41%), Gaps = 73/714 (10%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAN 283 L ++ ++V Q ++ + + ++E + E+ + + Sbjct: 21 LLQIEKDVFAINSYYEQHVLPNKKKFSSLEDRITYLLKEEYYESNVFENYKKDFIKNIFF 80 Query: 284 DLKYERDFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 K + ++G Y Y L N +E + VA+ L EK A+ Sbjct: 81 QSKKQGFKFKTFMGAIKFYSSYALKTFDNKYYLEDFEDRACMVALTLGGG---NEKFAIN 137 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + S F +TPT N G + + SCFL + D++ I AL L+K GG+ Sbjct: 138 IMQEILSGRFQPATPTFLNCGKKQRGEYVSCFLLRIEDNMESIGRALNSALQLSKRGGGV 197 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 T +R GA I +S G++P +K+ D NQ G R+GA YL H D+ Sbjct: 198 SFLLTNLRESGAPIKCIKNQSSGIVPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDIL 257 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FLD ++ D++ R ++ IPD+ K +N LFSP D+ +Y K F Sbjct: 258 NFLDTKRENADEKIRIKTLSLGVIIPDITFKLAKENQNMCLFSP---YDIKKVYNKPFSE 314 Query: 521 AYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + +I++ + I+A + ++K+ + FE+G+P+I F+D N +P G + Sbjct: 315 LIISKIYYKLINDIRIKKISINARSFFQKLAEVQFESGYPYIMFEDTVNKENPIY--GKI 372 Query: 580 HSSNLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRT 627 + SNLC+EI +++ E CNLGS+N+ D L T+ Sbjct: 373 NMSNLCSEILQVNTASEYNEDLSYKKIGRDISCNLGSLNIAKT-----MDSSNLGKTVEV 427 Query: 628 AVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 A+R L V DI +++ K N +IGLG M L +I Y SPEA+E + Sbjct: 428 AIRCLTAVSDITKINSVSSVVKGNKKSHSIGLGQMNLHGYLARENIFYGSPEAIEFTNFY 487 Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE--------LA 737 I++HAI S LA ER +S F S + G F + + Sbjct: 488 FYVITYHAIRTSNLLAIERKKTFSGFSRSKYANGKFFKKYTKKTWIPKSDRILNLFNNNN 547 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS- 796 ++ + W L+ V G+ N N AI PT +I+ I + SI P + ++ Sbjct: 548 IHLPTLKEWKILENSVMKYGLYNQNLQAIPPTGSISYINYSTSSIHPVVSRIEIRKEGKI 607 Query: 797 GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWL 856 G ++ N + A+EI P + Sbjct: 608 GRVYYPAPYMTN-------------------------------KNLCYYQDAYEIGPKKI 636 Query: 857 IESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 I++ + K +DQ SL L+ D+ + + ++ AW G+KT YY+R R T Sbjct: 637 IDTYAAATKHVDQGLSLTLFFRDDATTRDINKAQIYAWKKGIKTLYYVRIRQLT 690 >gi|146280505|ref|YP_001170658.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri A1501] gi|145568710|gb|ABP77816.1| ribonucleotide reductase, alpha subunit [Pseudomonas stutzeri A1501] Length = 745 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 142/650 (21%), Positives = 257/650 (39%), Gaps = 63/650 (9%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTL 358 +G+ I + + RVA LA E ++E F L + + + Sbjct: 59 QKYRLSSKDGTPIDQTVDDTWQRVARALADVEPAKQREHWYERFLWALRNGAI-PAGRII 117 Query: 359 FNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 N+G + + +C ++ ++ D + I G + E + K G+G +++ +R G+ Sbjct: 118 SNAGAQDYKPATSTINCTVSGSITDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPRGSF 177 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + G + G + F+ + + V+ G R+GA + H DV EF+ ++ + Sbjct: 178 VSGAGAHTSGPLSFMDIFDKMCFTVSSAGGRRGAQMGTFDVGHPDVREFIRAKR----ED 233 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENY 525 R N + I D FM+ V + W L P D + +E+ + Sbjct: 234 GRLRQFNLSLLITDEFMQTVEADGEWPLIFPVHAKEAAELDLADDAQVIWREWPVHDGYI 293 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 R K++ ++ A LW ++ ++ P D N + + ++N C Sbjct: 294 VRDDGLVACKIYGRVKARHLWDMIMVSTYDYAEPGFILIDRVNQLNNNWWCEAIRATNPC 353 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINC 640 E L C LGSINL + FD+DK +R R+LDNV++IN Sbjct: 354 GEQPLPPY----GSCLLGSINLTHFVIDPFGVEARFDWDKYREVVRVFTRMLDNVVEING 409 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 +E+ + + R G+G +G S L LL + Y SPEA +E ++ ++E Sbjct: 410 LPLEQQRHEIESKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVSREMALVGWEQALE 469 Query: 701 LAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------D 747 L++E+G + L + D + ++ + + SR Sbjct: 470 LSKEKGPAPLLSQNFEVTAEMLRKRPEMAKDGYKVGDQIAGRVLHAKYSRYMQKIAEYAP 529 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN-----MSGDFT 800 +L + + G R ++ +IAPT TI+ S I+PS+ + Y ++ + + Sbjct: 530 DLIEALAEQGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIRPGRKAKEKI 589 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 V S+ L R L + + GS + + L TA ++ P ++ Sbjct: 590 EVFSY--ELLAYRTLINA------RAKPGS----DEPGEKLPDYFITADDVSPTQHVDIQ 637 Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 + QKW+D + S + + + IYR AW GLK R A Sbjct: 638 AAAQKWVDSSISKTANVPTDYPFEAFKDIYRYAWRQGLKGCTTFRFNPAA 687 >gi|184156150|ref|YP_001844490.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus fermentum IFO 3956] gi|183227494|dbj|BAG28010.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus fermentum IFO 3956] Length = 721 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 170/732 (23%), Positives = 290/732 (39%), Gaps = 105/732 (14%) Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--I 314 + + + + E + L ++ ++G Y +Y + N + + Sbjct: 58 AKLVADDYLDGAVLEQYPAEFIDQLEARVRAHHFRFKSFMGAYKFYAQYAMKTNDGKRFL 117 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E RV ++ A + + L + + +TPT N+G + Q+ SCFL Sbjct: 118 EDYND---RVVANALYLARGDQQLAKDLTDELINQRYQPATPTFLNAGKKRRGQMVSCFL 174 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + I AL L++ GG+G + + +R G I S GV+P +K+ D Sbjct: 175 IDVQDSMLSIGRALNSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVLPVMKLLED 234 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 NQ G+R GA YL +H D+ FL+ +K D++ R ++ +PD + + + Sbjct: 235 AFSYSNQLGQRNGAGVVYLNVFHPDIMAFLETKKENADEKIRVKTLSLGLVVPDKYYQLL 294 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 NA LFSP +V + + Y+R IK ISA L +K+ + Sbjct: 295 KSNAPMYLFSPYDVE-RELKTPFSYVDLTKEYDRLVANPRIKKT-AISARELEQKISRLQ 352 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLGSIN 606 E+G+P+I D N +P G + SNLC+EI V S N Sbjct: 353 QESGYPYILNIDHANRDNPV--AGKIIMSNLCSEILQPQEPSTLTSDLSYETVGTDISCN 410 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 L + +N + AVR L NV D N + K N + IGLG MG + Sbjct: 411 LGSTNIDNMLQAPDFGRAVEVAVRALTNVTDTTNIEEVPSIAKGNRLYHTIGLGAMGLHT 470 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPID 724 AL I Y SPEA+E + ++++++ AS ++A+ER ++ FK S + G + D Sbjct: 471 ALARRQIEYGSPEALEFTEAYFLALNYYSLLASHQIAKERGETFAGFKDSRYADGSYFDD 530 Query: 725 SIG-----LLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 + + R + ++ + W LK+ V+T G+ + N +A+AP +I+ + Sbjct: 531 YVTKPFTLKFEKNRAAFSGVHLPTTADWQALKEAVQTDGLYHRNRLAVAPNGSISYVNET 590 Query: 779 SQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S S+ P Q + + N G +L N Sbjct: 591 SASLTPITQLVEQRQENKVGALFYPAPYLSN----------------------------- 621 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPS 881 + + A+++D +I++ + QK +DQ SL L++ + + Sbjct: 622 --ETLPYYTPAYDLDQRKIIDTYAVAQKHVDQGMSLTLFMRSTLPTGLYEWKKPDQPKMT 679 Query: 882 GKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 + L+ + AW G+K+ YY+R+ T N Sbjct: 680 TRDLNRLRNYAWTKGIKSLYYIRT--------FTTDDEIHTAN----------------- 714 Query: 942 SSCTSDTECEVC 953 ECE C Sbjct: 715 -------ECESC 719 >gi|321315507|ref|YP_004207794.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis BSn5] gi|291484286|dbj|BAI85361.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. natto BEST195] gi|320021781|gb|ADV96767.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis BSn5] Length = 700 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 151/697 (21%), Positives = 290/697 (41%), Gaps = 58/697 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E +E D+ + ++ Sbjct: 30 KEAVHSYFVDYINQNTVFFHDL-KEKLDYLVENQYYEEEFLSLYSFEDIKEVFKTAYAKK 88 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y+ Y L N +E + R+++ ++A E+ NL+ Sbjct: 89 FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDTEKAKEYVNLMI 145 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + STPT N+ R +L SCFL V D L I A+ + L+K GG+ + + Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +FLD + Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K + D+ R ++ IPD F++ ++ +F P + YG+ + N Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEM 322 Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V + KI+ L K+ + E+G+P+I F+D N H+ V SNLC Sbjct: 323 YDKFVDNPRVKKEKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLC 382 Query: 586 TEITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +E+ + +E L S NL + N ++ + T++ A L +V + Sbjct: 383 SEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNILNVMEHKSIEKTVKLATDSLTHVSET 442 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +++N ++IGLG M L I Y SPEA + A+ ++F++I Sbjct: 443 TDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQR 502 Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELK 750 S E+A+E+ + ++GS + G + D ++ + M+ + W +LK Sbjct: 503 SAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFEGMHIPTTEDWKKLK 562 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 V GM +S + IAPT +I+ + + S+ P + + ++ + Sbjct: 563 AFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP-------- 614 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + A+++D +++ + Q+ IDQ Sbjct: 615 -----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQG 651 Query: 871 QSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 S L+L + + + L+ I A G+KT YY R++ Sbjct: 652 ISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|253689502|ref|YP_003018692.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756080|gb|ACT14156.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 721 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 166/680 (24%), Positives = 278/680 (40%), Gaps = 74/680 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +EEG + + + L + +LG Y Y L +G Sbjct: 68 EKLRYLVEEGYYEAEVLDQYQFDFIKRLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 127 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA A + + S F +TPT N G + +L S Sbjct: 128 RYLERYEDRVCLVALTLA---KGDTALAGALVDEIISGRFQPATPTFLNCGKKQRGELVS 184 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 185 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 244 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 245 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 304 Query: 491 KRVTQNAGWTLFSPDEVSDLH--DLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 + N LFSP +V ++ L Y + +I A ++ Sbjct: 305 QLAKNNQVMYLFSPYDVEQVYSVPLSEISVTEKYHEMVNDKRIRKS----QIKAREFFQI 360 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE------------E 596 + + FE+G+P++ F+D N +P G ++ SNLC+EI + + + Sbjct: 361 LAEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGK 418 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ A+ T+ A+R L V D+ + ++ +K N A Sbjct: 419 DISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHIRSVPSIEKGNDESHA 473 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGS 714 IGLG M L I Y + EAV+ + ++FHAI AS LA E +S F+ S Sbjct: 474 IGLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFEHS 533 Query: 715 LWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + I E ++ ++ ++ W L++ V G+ N N A+ Sbjct: 534 KYATGEYFDKYIEQCWEPTTARARELFEQADIHIPTQQDWAALRESVIAHGIYNQNLQAV 593 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 594 PPTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND---------------- 637 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI P +I++ + + +DQ SL L+ + + + Sbjct: 638 ---------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRD 682 Query: 885 LDFIYRQAWLMGLKTTYYLR 904 ++ AW G+KT YY+R Sbjct: 683 INKAQIYAWTKGIKTIYYIR 702 >gi|325000219|ref|ZP_08121331.1| vitamin B12-dependent ribonucleotide reductase [Pseudonocardia sp. P1] Length = 964 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 128/643 (19%), Positives = 233/643 (36%), Gaps = 29/643 (4%) Query: 311 GSRIEMPQAFFMR--VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQ 367 +E + R V G + + E E +L F ++P FN GT Q Sbjct: 119 KQLVERVVGTYRRAGVENGYFATDADAEVFDHELTWMLIHQVFSFNSPVWFNVGTPSPQQ 178 Query: 368 LSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPF 427 +S+CF+ +V D + I +E ++ K G G + + +R + G + G + F Sbjct: 179 VSACFILSVDDTMESILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSF 237 Query: 428 LKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIP 486 ++ A+ +A + G R+ A L+ H DVEEF++ + R D + Sbjct: 238 MRGADASAGTIKSGGATRRAAKMVVLDVDHPDVEEFVETKAKEEAKVRVLRDAGFDMDLG 297 Query: 487 DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + V + + + D + + E E R GE V + A L+ Sbjct: 298 GSDITSVQ------YQNANNSIRVSDEFMRAVEEDTEFGLRARMTGE--VIDTVDARKLF 349 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 + + P I + N G + +SN C+E + + CNL S+N Sbjct: 350 HGIAEAAWNCADPGIQYDGTINDWHTCPESGRITASNPCSEYMH----LDNSSCNLASLN 405 Query: 607 LLAHFA-NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 LL +++FD + A + + +D I + + R +G+G + Sbjct: 406 LLKFLDADDRFDAETFAKAVELIITAMDISICFADFPTDPIADTTRKFRQLGIGYANLGA 465 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDS 725 L Y S +A ++ A S ELA G Y + + Sbjct: 466 LLMATGHAYDSEGGRALAGAITSLMTGAAYKRSAELAGVVGPYEGYARNAEAHQRVIRKH 525 Query: 726 IGLLAEVRDEL---AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQS 781 +R A+ + + L W + ++ + G RN+ +APT TI + + Sbjct: 526 AAANDGIRTFAASTAIQKLATLTWKQCQEIGEANGWRNAQASVLAPTGTIGLMMDCDTTG 585 Query: 782 IDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIP 838 I+P + + K G +VN + L E + ++Y G + + + Sbjct: 586 IEPDLALVKFKKLVGGGSMQIVNQSVRRALDNLGYQAEQAEAIVEYVAEHGHVVDAPGMR 645 Query: 839 DDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWL 894 + ++ A I PM + + Q ++ A S + + E + + ++ IY + W Sbjct: 646 PEHYEVFDCAMGERSIAPMGHVRMMAAAQPFLSGAISKTVNMPERATVEDVERIYLEGWR 705 Query: 895 MGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 +GLK R S KG G+ A Sbjct: 706 LGLKALAIYRDNCKVGQPLSAGKGGSGEKTAEAEPKVVVEQRP 748 >gi|206967719|ref|ZP_03228675.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus AH1134] gi|228907083|ref|ZP_04070947.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 200] gi|228951832|ref|ZP_04113930.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043193|ref|ZP_04190916.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH676] gi|229069002|ref|ZP_04202295.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus F65185] gi|229078636|ref|ZP_04211193.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock4-2] gi|229126768|ref|ZP_04255780.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-Cer4] gi|229144055|ref|ZP_04272471.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-ST24] gi|229149652|ref|ZP_04277883.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus m1550] gi|229177858|ref|ZP_04305231.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus 172560W] gi|296502032|ref|YP_003663732.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus thuringiensis BMB171] gi|206736639|gb|EDZ53786.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus AH1134] gi|228605649|gb|EEK63097.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus 172560W] gi|228633862|gb|EEK90460.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus m1550] gi|228639452|gb|EEK95866.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-ST24] gi|228656708|gb|EEL12534.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus BDRD-Cer4] gi|228704706|gb|EEL57135.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus Rock4-2] gi|228714114|gb|EEL65996.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus F65185] gi|228726155|gb|EEL77389.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus cereus AH676] gi|228807755|gb|EEM54276.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228852587|gb|EEM97377.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 200] gi|296323084|gb|ADH06012.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus thuringiensis BMB171] Length = 682 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|157955309|gb|ABW06025.1| NrdE [Bacillus thuringiensis serovar canadensis] Length = 694 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 164/712 (23%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + E Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVEERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|16078801|ref|NP_389620.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. 168] gi|221309617|ref|ZP_03591464.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. 168] gi|221313940|ref|ZP_03595745.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318863|ref|ZP_03600157.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. JH642] gi|221323135|ref|ZP_03604429.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. SMY] gi|1710384|sp|P50620|RIR1_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase large subunit gi|1154632|emb|CAA92810.1| NrdE [Bacillus subtilis subsp. subtilis str. 168] gi|2634122|emb|CAB13622.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 700 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 149/674 (22%), Positives = 284/674 (42%), Gaps = 57/674 (8%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E +E D+ + ++ ++ Y+ Y L N Sbjct: 52 KEKLDYLVENQYYEEEFLSLYSFEDIKEVFKTAYAKKFRFPSFMSAFKFYNDYALKTNDK 111 Query: 313 --RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLS 369 +E + R+++ ++A E+ NL+ + + STPT N+ R +L Sbjct: 112 KKILERYED---RISIVALFFANGDTEKAKEYVNLMINQEYQPSTPTFLNAGRKRRGELV 168 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D L I A+ + L+K GG+ + + +R G I ++GV+ +K Sbjct: 169 SCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMK 228 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + ++ +Q G+R+G+ AYL +H D+ +FLD +K + D+ R ++ IPD F Sbjct: 229 LLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTKKISADEDVRVKTLSIGVVIPDKF 288 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRK 548 ++ ++ +F P + YG+ + N +V + KI+ L K Sbjct: 289 VELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEMYDKFVDNPRVKKEKINPRKLLEK 345 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------NSSSEETAVCNL 602 + + E+G+P+I F+D N H+ V SNLC+E+ + +E L Sbjct: 346 LAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLCSEVLQASQVSSYTDYDEEDEIGL 405 Query: 603 G-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + N ++ + T++ A L +V + + +++N ++IGLG Sbjct: 406 DISCNLGSLNILNVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVRRANKAMKSIGLGA 465 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L I Y SPEA + A+ ++F++I S E+A+E+ + ++GS + G Sbjct: 466 MNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRSAEIAKEKGETFDQYEGSTYATG 525 Query: 720 VFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 + D ++ + M+ + W +LK V GM +S + IAPT +I+ Sbjct: 526 EYFDKYVSTDFSPKYEKIANLFEGMHIPTTEDWKKLKAFVAEHGMYHSYRLCIAPTGSIS 585 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + + S+ P + + ++ + Sbjct: 586 YVQSSTASVMPIMERIEERTYGNSKTYYP------------------------------- 614 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLDFIYRQA 892 + + + + A+++D +++ + Q+ IDQ S L+L + + + L+ I A Sbjct: 615 MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFLKDTMTTRDLNRIDLYA 674 Query: 893 WLMGLKTTYYLRSR 906 G+KT YY R++ Sbjct: 675 HHRGIKTIYYARTK 688 >gi|228920163|ref|ZP_04083512.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839619|gb|EEM84911.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 682 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L +I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNNIAYESAEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|329738367|gb|AEB97331.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1] Length = 786 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 177/737 (24%), Positives = 280/737 (37%), Gaps = 99/737 (13%) Query: 269 LHESMMDFDLVYLANDLKYERDF------AFEYLGLQILYDR---YFLHINGSRIEMPQA 319 L F L + +DF +GLQ Y + ++E Sbjct: 98 LSADCKQFILENAEHISAVVKDFYNGTYHQLARVGLQSAQKYESLYLGKLGNGKLESMGQ 157 Query: 320 FFMRVAMGLALKETE---------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 FF R++ A F+ LSS + TP + GT Sbjct: 158 FFTRLSAEAARGAFNIPQFAQALEVDGQVTPADVFTRFFTCLSSQLIVPPTPVMLFGGTS 217 Query: 365 HPQLSSCFLTTV--PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 +SCFL + +E + GG+G + Sbjct: 218 LAAYASCFLIDSSGRNTREAFNVVAEEVIPIMNNRGGIGISLPCLGAPQN--------ES 269 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNT 481 G + FLK + A N KR +C Y E WH D + L +R ++ ++ R ++ T Sbjct: 270 GCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFT 329 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A W+PDLFMKR+ Q L +L+G+EFE YE ER+ I Sbjct: 330 AIWMPDLFMKRLQQPGSKWTLFDHRGEHLSNLFGEEFEKEYERLERENV-----GVATIP 384 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVC 600 + +++ TG P++ FKD N + SNLCTEI + S+ VC Sbjct: 385 ITEIMFQIIKSAVSTGTPFVVFKDAFNRHYFYNMQHRALKCSNLCTEIAHMADSDTVGVC 444 Query: 601 NLGSINLLAHFAN----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 NL SINL A N + FDY+ L T RTA + +I + ++A+ N Sbjct: 445 NLISINLAAMVKNARAGLAGKPGSFFDYELLRETARTATIFANVMISLGNMPSQRAQSGN 504 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709 H R++G+G+ G +A + S E E D E ++ S L + + Sbjct: 505 HRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFNDTVFELLALETTGISCRLCELGLPPFD 564 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 ++ S + G ID + WD L+ R+ G+ N +A+ PT Sbjct: 565 KYRESYYALGWLHIDGWPNTKLR---------YKNEWDSLRHRIDQSGLYNCQTVALMPT 615 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKY 826 A+ + I VS+ P + N++ K + +G+ + L++ + + +++LK Sbjct: 616 ASSSQITEVSEGFQPVFGNMFSKISTTGEEVRPHLALMDAIDELYSDQGEKQAFLANLKK 675 Query: 827 HDGSIG---NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--- 880 H S+ + TAFE+D L+ ++RR +ID +QS LY+ E Sbjct: 676 HQWSVRAALGSAWSESHVLAKFQTAFELDQEKLLYLSARRAPFIDHSQSNTLYITEDVDG 735 Query: 881 --SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 S ++ + + A+ GLKT YY + R T+ N V V Sbjct: 736 TLSASRVSRLLQVAFKYGLKTAMYYCKVRKITN-------------NGVFVG-------- 774 Query: 938 LGIPSSCTSDTECEVCQ 954 SC C CQ Sbjct: 775 -----SCGDSLICSACQ 786 >gi|312872655|ref|ZP_07732720.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091697|gb|EFQ50076.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus iners LEAF 2062A-h1] Length = 725 Score = 301 bits (770), Expect = 4e-79, Method: Composition-based stats. Identities = 182/754 (24%), Positives = 311/754 (41%), Gaps = 89/754 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + + + + + E I+ + L + +++ ++ K Sbjct: 29 KKAVKAYIDEKINPNTKKFKS-FRERLNFLIDNDYYDKDL---LAKYNIEFIEKLTKKAY 84 Query: 290 DFAFEY---LGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D F + +G Y+ Y L N +E + RV M E A Sbjct: 85 DQHFTFPNFMGAVKFYNAYALKTNDHKEYLENYED---RVVMNALFLADGDEDFATSLLM 141 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + F +TPT N+G + + SC+L V D++ I ++ + L+K GG+ Sbjct: 142 DIIHNRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRSITTSLQLSKRGGGVALC 201 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 T +R GA I +S G+IP +K+ D+ NQ G+R+GA YL H ++ +FL Sbjct: 202 LTNLREFGAPIKKIENQSSGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEILKFL 261 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 D ++ D++ R ++ IPD+ + +N LFSP D+ YGK Sbjct: 262 DTKRENADEKIRIKSLSLGVVIPDITFQLAKENKDMALFSP---YDIMREYGKPMSDISI 318 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E K+ + ISA L++ + + FE+G+P+I F+D N R+P + G + S Sbjct: 319 TKEYDKLVANPKIKKTYISARKLFQTIAELQFESGYPYIMFEDTVNDRNPNKKEGRIVMS 378 Query: 583 NLCTEITLNSSSEET------------AVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI ++ E CNLGS+N+ + + + ++R Sbjct: 379 NLCSEIAQVNTPSEYNEDLSFSKTGHDICCNLGSLNIAKAMDYS----EHFEHLVANSIR 434 Query: 631 VLDNVI-DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD V + N +K N + A+GLG M L HI Y SPEAV+ D Sbjct: 435 ALDRVSRESNLKCAPSIRKGNLANHAVGLGAMNLHGFLATNHIFYNSPEAVDFTDMFFYA 494 Query: 690 ISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR--------T 741 +++A AS +LAQ+ GAYS FK S + G + + + Sbjct: 495 TAYYAFKASNKLAQKFGAYSGFKESEYADGSYFKKYTEHDNLPKTATIKDLLNKYHFYIP 554 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 SR W+ L +K G+ NS+ +A+APT +I+ + + S+ P + + Sbjct: 555 SREDWNNLVNNIKKYGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVETRKEGMVGRIY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESA 860 V ++ +I ++ K + A+E+ P +I+ Sbjct: 615 VPAY------------------------------KIDNNNYKYYQKGAYEVGPAAIIDIV 644 Query: 861 SRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 + QK +DQA SL L++ + + + L+ Y A+ T YY+R V + L+G Sbjct: 645 AAAQKHVDQAISLTLFMTDKATTRDLNKAYIYAFKKKCATIYYVR------VRQEVLEGS 698 Query: 920 DGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + CT EC+VC Sbjct: 699 ENLAADEVIKTDK---------FKCTGSKECQVC 723 >gi|209694807|ref|YP_002262735.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238] gi|208008758|emb|CAQ78955.1| ribonucleotide reductase [Aliivibrio salmonicida LFI1238] Length = 717 Score = 301 bits (770), Expect = 5e-79, Method: Composition-based stats. Identities = 139/654 (21%), Positives = 263/654 (40%), Gaps = 60/654 (9%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIE-MPQAFFMRVAMGLALKETEKEKR-AVEFYNLLSSF 349 ++ + I +Y L G+R++ F RVA L+ E E++ E + Sbjct: 19 YQSTSMDIWESKYCLKNKQGNRVDLSMDDTFKRVAKALSDLEQPAEQKQWNEQFLWALRN 78 Query: 350 HFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + N+G + +C ++ T+ D + I G + E + K G+G D+ Sbjct: 79 GAIPAGRITSNAGAFEHKPATSTINCTVSGTIVDSMDDILGKVHEAGLTLKAGCGIGYDF 138 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA + G + G + F+ + + V+ G R+GA ++ H DV +F+ Sbjct: 139 STLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVIDFIR 198 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP----------DEVSDLHDLY 514 ++ + R N + I + F++ V W L P ++ + + Sbjct: 199 AKR----EDGRLRQFNLSLLITEDFVEAVKNQNDWQLIFPITLKEAKLDHMDLYSDNSVV 254 Query: 515 GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 ++ + E + KV+R + A LW ++T ++ P D N + Sbjct: 255 WADWPVKEGFAENEEGLVACKVYRTMPAQNLWNIIMTSTYDYAEPGFILIDKVNQMNNNW 314 Query: 575 HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAV 629 + ++N C E L C LGSINL N FD+D + + Sbjct: 315 FCEEIRATNPCGEQPLPPY----GACLLGSINLTKFVRNPFTDTAFFDWDAYRNVVSIFT 370 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 R+LDNV++IN +E+ + R G+G +G S L +L Y S E++ ++ + Sbjct: 371 RMLDNVVEINQLPLEQQRHEIMHKRRHGMGFLGLGSTLTMLQHKYGSIESIGFTEQVAQE 430 Query: 690 ISFHAISASVELAQERGAYSSFKGSLW-------DQGVFPIDSIGLLAEVRDELAMNRTS 742 ++ + ++LA E+G+ + S + D I L +V+ ++ + S Sbjct: 431 MAVTGWKSGLDLAAEKGSAPIMEESFIVTAKMLRQRPEMAEDGIKLGDKVKGKVLHAKYS 490 Query: 743 RLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSN 794 R +L ++ G+R ++ +IAPT TI+ S I+PS+ + Y ++ Sbjct: 491 RYMQQLAIIEPKLVAKIIEQGVRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRNV 550 Query: 795 MSG---DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 + V+ + L R L ++ + + + L TA +I Sbjct: 551 IKTGKKSKESVDVYSYELLAYRALINDKAMPYSTNEE----------NKLPDYFITADDI 600 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 P + + QKWID + S + + ++ IY A+ GLK R Sbjct: 601 TPQQHVAVQAAAQKWIDSSISKTANIPTDFPFEEFKDIYMDAYDKGLKGCTTFR 654 >gi|308187850|ref|YP_003931981.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] gi|308058360|gb|ADO10532.1| ribonucleoside-diphosphate reductase alpha chain [Pantoea vagans C9-1] Length = 712 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 170/720 (23%), Positives = 293/720 (40%), Gaps = 69/720 (9%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKA----RLLH 270 +Y + A L + ++ + + + F E Sbjct: 13 DYHALNAMLNLYDADGRIQFDKDREATRQFYLQHVQPNTVSFASNAERLRYLVAESYYEA 72 Query: 271 ESMMDFDLVYLAND--LKYERDFAF-EYLGLQILYDRYFLH-INGSRI-EMPQAFFMRVA 325 + + +D +L + R F F +LG Y Y L +G R E + VA Sbjct: 73 DVLNQYDFEFLLALHEVAENRGFEFKTFLGAWKYYTSYTLKTFDGKRYLETFEQRACMVA 132 Query: 326 MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIF 384 + LA + + +E + S F +TPT N G + +L SCFL + D++ I Sbjct: 133 LTLAQGDETLARALLE---EILSGRFQPATPTFLNCGKQQRGELVSCFLLRIEDNMESIG 189 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 A+ L+K GG+ + +R GA I +S GVIP +K+ D NQ G R Sbjct: 190 RAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGAR 249 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA +L H D+ FLD ++ D++ R ++ IPD+ + +N LFSP Sbjct: 250 QGAGAVWLNAHHPDIFRFLDTKRENADEKIRIKSLSLGVVIPDITFQLAKENKPMALFSP 309 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITF 563 D+ +YG+ F + + + ++ + I ++ + + FE+G+P+I + Sbjct: 310 ---YDVERIYGQAFGDISISEKYDEMLADDRIRKTYIQPRDFFQTLAEIQFESGYPYIMY 366 Query: 564 KDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQF 616 +D N G ++ SNLC+EI +S+ E S NL + + Sbjct: 367 EDSVNR--SNPIAGRINMSNLCSEILQVNSASEYNDDLSYRRVGKDISCNLGSLNIAHAM 424 Query: 617 DYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYA 675 D LA T+ AVR L +V + ++ + N AIGLG M L I Y Sbjct: 425 DSRDLARTVDVAVRALTSVSMMSEIGSVPSIAEGNRRSHAIGLGQMNLHGYLAREGIAYG 484 Query: 676 SPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVR- 733 SPEA++ + I+++A+ S +LAQE + F S + GV+ + R Sbjct: 485 SPEALDFTNLYFYCITYYALRTSNQLAQEHQQTFDGFADSDYASGVYFDKYLQRAWLPRT 544 Query: 734 -------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 + + ++ W L+ V G+ N N AI PT +I+ I + SI P Sbjct: 545 ERVAQLFADAGLTLPTQADWQALRDAVMQHGLFNQNLQAIPPTGSISYINHATSSIHPIV 604 Query: 787 QNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + ++ +G F+ N + ++ Sbjct: 605 SPIEIRKEGKTGRVYYPAPFMTN-------------------------------ENLHLY 633 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+KT YY+R Sbjct: 634 QDAYQIGPEAIIDTYAEATQHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGIKTLYYIR 693 >gi|221067377|ref|ZP_03543482.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni KF-1] gi|220712400|gb|EED67768.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni KF-1] Length = 797 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 147/674 (21%), Positives = 249/674 (36%), Gaps = 87/674 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSSFHFMCSTP 356 +L ++Y +G + E Q F RVA LA E + +F L Sbjct: 12 DVLAEKYLA--DGEQSE--QDLFARVAHALAAVEKPELQAHWEQKFLLNLQLGAIGAGRI 67 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408 L +CF+ V D G + AL + A + GG+G D++ +R Sbjct: 68 MAAAGLDTKATLINCFVQPVADATNGFDTQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + GTN + G F+ V + + V G R+GA L H DV EF+ ++ Sbjct: 128 PRGALVRGTNSNASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 G R ++ N + + + FM+ V +A W L SD G Sbjct: 188 KG----RWNNFNVSVGVSNAFMQAVRDDAEWELLHVASPSDAQIQAG-----------AH 232 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + V++ A LW ++ ++ P I F D N + + + ++N C E Sbjct: 233 RREDGLWVYQSQPARTLWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQ 292 Query: 589 TLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTI 643 L C+LG + L FD + + + VR+LDNV+D + Sbjct: 293 PLPPY----GCCDLGPVILTRFVREPFTPQAFFDLEAFRAAVAVQVRMLDNVLDATVWPL 348 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + ++ R IG+G G AL LL + YAS ++ A+ + A +ASVELA+ Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAEAIARNMRDAAYAASVELAR 408 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G++ F + + ++ EL+ ++ G+RNS+ Sbjct: 409 EKGSFPLFNAKQY--------------------LKSGFAKRLPKELRADIRKHGLRNSHL 448 Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM---SGD-FTVVNSFLVNELKQRDLWD 817 ++IAPT T++ S I+P++ Y + G+ F V K Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRRKRTADGGEQFYTVQDHAYRLYKAM---- 504 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + P L + +A E+ + Q +ID + S + + Sbjct: 505 ---------------HGDEAP--LPECFVSALELSASEHVAMMRCVQPFIDTSISKTVNI 547 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA-VPVTDPNSST 935 + + +Y + W GLK R ST +S+ Sbjct: 548 PADYPFEDFKHLYMECWEAGLKGCATYRPNDTLGAVLSTESASKPSQTPTDKAQAAINSS 607 Query: 936 HSLGIPSSCTSDTE 949 S G+ + E Sbjct: 608 GSNGMTAVIERRPE 621 >gi|167572268|ref|ZP_02365142.1| ribonucleotide reductase system [Burkholderia oklahomensis C6786] Length = 825 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 143/633 (22%), Positives = 249/633 (39%), Gaps = 76/633 (12%) Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 + RVA G+A E +++ F L + L +CF+ Sbjct: 13 TVDDIYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAATLINCFV 72 Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D + G I+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 73 QPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGPC 132 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + I Sbjct: 133 SYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVAI 188 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q+ W L E S G + V+ + A A+ Sbjct: 189 TDAFMDAVEQDLPWQLVHRAEPSPARRAAGDL----------HRRDDGMWVYAEKRARAI 238 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P + F N + + V + ++N C E L + CNLG + Sbjct: 239 WDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 294 Query: 606 NLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL + FD+D LA RT VR LD+V+D+ + + + R I Sbjct: 295 NLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRRI 354 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G L +L + Y S E + A + A ASVELA+ERGA+ F + Sbjct: 355 GIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADRY 414 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 L + D+++ ++ G+RNS+ ++IAPT T++ Sbjct: 415 -------------------LEAGTFASRLPDDIQDAIRRDGIRNSHLLSIAPTGTVSLAF 455 Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 S I+P++ Y ++ + + + +R E L G G++ Sbjct: 456 ADNASNGIEPAFSWTYQRTKI-----------MADGGRRTFAVEDYAYRLYRELG--GDV 502 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893 + +PD +A ++ + + Q ++D + S + + + + +Y AW Sbjct: 503 DALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPFDDFESLYFDAW 558 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 GLK R T + D A Sbjct: 559 KSGLKGLATYRPNETLGAVLHTSEPEDTLTEAD 591 >gi|167565165|ref|ZP_02358081.1| ribonucleotide reductase system [Burkholderia oklahomensis EO147] Length = 843 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 143/633 (22%), Positives = 249/633 (39%), Gaps = 76/633 (12%) Query: 316 MPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFL 373 + RVA G+A E +++ F L + L +CF+ Sbjct: 31 TVDDIYRRVAHGVAQAEPAALRDEIEARFVEHLQRGALGAGRIMSAAGSSIAATLINCFV 90 Query: 374 TTVPDDLYG--------IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 V D + G I+ AL + A + GG+G +++ +R GA++H T + G Sbjct: 91 QPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNFSAIRPRGAYVHSTGSSASGPC 150 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWI 485 ++ V + + V G R+GA A L+ H D+ EF++ + + G R ++ N + I Sbjct: 151 SYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIEAKHSKG----RWNNFNISVAI 206 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM V Q+ W L E S G + V+ + A A+ Sbjct: 207 TDAFMDAVEQDLPWQLVHRAEPSPARRAAGDL----------HRRDDGMWVYAEKRARAI 256 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P + F N + + V + ++N C E L + CNLG + Sbjct: 257 WDTIMRSTYDVAEPGVVFISKMNDDNNLRAVETIRATNPCGEQPLPAY----GCCNLGPL 312 Query: 606 NLLAHFANNQ---------FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAI 656 NL + FD+D LA RT VR LD+V+D+ + + + R I Sbjct: 313 NLTRFVIDPFAQLQGGDSVFDWDALAERTRTQVRFLDDVLDVTLWPLPEQRHEAEQKRRI 372 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW 716 G+G G L +L + Y S E + A + A ASVELA+ERGA+ F + Sbjct: 373 GIGFTGLGDTLVMLGLRYDSQEGRDFAARVGREMRDAAYGASVELARERGAFPLFDADRY 432 Query: 717 DQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 L + D+++ ++ G+RNS+ ++IAPT T++ Sbjct: 433 -------------------LEAGTFASRLPDDIQDAIRRDGIRNSHLLSIAPTGTVSLAF 473 Query: 777 --GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 S I+P++ Y ++ + + + +R E L G G++ Sbjct: 474 ADNASNGIEPAFSWTYQRTKI-----------MADGGRRTFAVEDYAYRLYRELG--GDV 520 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAW 893 + +PD +A ++ + + Q ++D + S + + + + +Y AW Sbjct: 521 DALPD----YFVSALQMSAHDHLAMMAAVQPYVDTSISKTVNVPADYPFDDFESLYFDAW 576 Query: 894 LMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 GLK R T + D A Sbjct: 577 KSGLKGLATYRPNETLGAVLHTSEPEDTLTEAD 609 >gi|94993747|ref|YP_601845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10750] gi|94547255|gb|ABF37301.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10750] Length = 726 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 171/751 (22%), Positives = 302/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKHYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA ++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG M L HI Y + EAV+ D +++ Sbjct: 439 RVSRLSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 +A AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC C Sbjct: 707 LVTAPGASDETTT-------------ECHSC 724 >gi|291454575|ref|ZP_06593965.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus J1074] gi|291357524|gb|EFE84426.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus J1074] Length = 965 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 125/669 (18%), Positives = 234/669 (34%), Gaps = 44/669 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L DR + E + E E L F Sbjct: 100 RETGLKQLIDRIVKTYRKAGEEN----------NYFASPADAEIFEHELAYALLHQIFSF 149 Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 150 NSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKE 209 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H D+E+F+ + + + Sbjct: 210 LLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVSEEE 268 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + V ++ G F + Sbjct: 269 KIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDAFMKAVESGSTFGLRARMT------ 322 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V ++ A +L+RKM + P I + D N G ++ SN C+E Sbjct: 323 --GEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH- 379 Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + CNL S+NL+ N F+ ++ + + + +D I +K Sbjct: 380 ---LDNTSCNLASLNLMKFLKDDGKGNQSFESERFSKVVELVITAMDISICFADFPTQKI 436 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ R +G+G + L Y S +A ++ + S ELA G Sbjct: 437 GENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVG 496 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762 Y + + A+ ++ + W ++ + G RN+ Sbjct: 497 PYDGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAWQDVVRLGAKNGFRNAQ 556 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 IAPT TI + ++P + + K G +VN + L++ + + E Sbjct: 557 ASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRMN-YSEEQ 615 Query: 821 ISDLKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLN 874 I + H G++ + + + ++ A I M + + Q WI A S Sbjct: 616 IEAIVAHIAEHGNVIDAPALKPEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKT 675 Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 + L E + + ++ +Y +AW +G+K R S K + K + Sbjct: 676 VNLPETATVEDVEEVYFEAWKLGVKALAIYRDNCKVGQPLSAKKKEEEKAEITEQAEETI 735 Query: 934 STHSLGIPS 942 + Sbjct: 736 RAAVEKVVE 744 >gi|306827910|ref|ZP_07461177.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes ATCC 10782] gi|304429829|gb|EFM32871.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes ATCC 10782] Length = 726 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 174/751 (23%), Positives = 304/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPNQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA ++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 +A AS +LA+E+GA++ F S + G + + A+ + + + Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWKALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R V + L G + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVR------VRQDVLAGSEQY 702 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 VT P +S S EC+ C Sbjct: 703 DEDSLVTAPEASDESTT---------ECQSC 724 >gi|239982726|ref|ZP_04705250.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces albus J1074] Length = 924 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 125/669 (18%), Positives = 234/669 (34%), Gaps = 44/669 (6%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMC 353 GL+ L DR + E + E E L F Sbjct: 59 RETGLKQLIDRIVKTYRKAGEEN----------NYFASPADAEIFEHELAYALLHQIFSF 108 Query: 354 STPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 ++P FN GT Q+S+CF+ +V D + I +E M+ K G G + + +R Sbjct: 109 NSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIFKGGSGAGLNLSRIRSSKE 168 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLETWHIDVEEFLDLRKNTGD 471 + G + G + F++ A+ +A + G R+ A L+ H D+E+F+ + + + Sbjct: 169 LLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILDVDHPDIEDFIQTKVSEEE 227 Query: 472 DRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADR 531 R D + + V ++ G F + Sbjct: 228 KIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDAFMKAVESGSTFGLRARMT------ 281 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 +V ++ A +L+RKM + P I + D N G ++ SN C+E Sbjct: 282 --GEVIEEVDAKSLFRKMAEAAWACADPGIQYDDTINAWHTCPESGRINGSNPCSEYMH- 338 Query: 592 SSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 + CNL S+NL+ N F+ ++ + + + +D I +K Sbjct: 339 ---LDNTSCNLASLNLMKFLKDDGKGNQSFESERFSKVVELVITAMDISICFADFPTQKI 395 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 ++ R +G+G + L Y S +A ++ + S ELA G Sbjct: 396 GENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITSLMTGTSYRRSAELAAVVG 455 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSN 762 Y + + A+ ++ + W ++ + G RN+ Sbjct: 456 PYDGYARNAEPHQRVMKQHADANAKAVRTDDLDNPIWAAATEAWQDVVRLGAKNGFRNAQ 515 Query: 763 CMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAM 820 IAPT TI + ++P + + K G +VN + L++ + + E Sbjct: 516 ASVIAPTGTIGLAMSCDTTGLEPDLALVKFKKLVGGGSMQIVNGTVPQALRRMN-YSEEQ 574 Query: 821 ISDLKYH---DGSIGNIERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLN 874 I + H G++ + + + ++ A I M + + Q WI A S Sbjct: 575 IEAIVAHIAEHGNVIDAPALKPEHYEVFDCAMGERSISAMGHVRMMAAIQPWISGALSKT 634 Query: 875 LYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNS 933 + L E + + ++ +Y +AW +G+K R S K + K + Sbjct: 635 VNLPETATVEDVEEVYFEAWKLGVKALAIYRDNCKVGQPLSAKKKEEEKAEITEQAEETI 694 Query: 934 STHSLGIPS 942 + Sbjct: 695 RAAVEKVVE 703 >gi|227545164|ref|ZP_03975213.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri CF48-3A] gi|300909161|ref|ZP_07126622.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus reuteri SD2112] gi|227184847|gb|EEI64918.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri CF48-3A] gi|300893026|gb|EFK86385.1| ribonucleoside-diphosphate reductase subunit alpha [Lactobacillus reuteri SD2112] Length = 723 Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats. Identities = 158/710 (22%), Positives = 282/710 (39%), Gaps = 72/710 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 + L K + L E F E + + L + LK + Sbjct: 34 KLALEDFIKNNVEPNTKSFSSL-KERFQWLEENDYIEEEFMNKYSEAFIEKLYDYLKTQN 92 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y +Y L N + RVAM E+ A++ + + Sbjct: 93 FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMQLADEIIHQ 151 Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N R + SCF DD+ I + L+K GG+G + + +R Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K Sbjct: 212 EAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V QNA LFSP +V +YG F E Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDV---ERVYGMPFSYVDITKEYD 328 Query: 529 A-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + +K++A L ++ + E+G+P+I D N +P G + SNLC+E Sbjct: 329 NLVANDDIRKKKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCSE 386 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N+ + + S NL + N + +I+ +R L + D+ + Sbjct: 387 IAQVQVPAQVNNDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVED 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + N ++GLG MG S L HI Y SP A+E +++ ++ AS Sbjct: 447 LDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASN 506 Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKR 752 E+A+E + + F+ S + G + + + ++ W +LK+ Sbjct: 507 EIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKKLKEN 566 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811 V G+ N +A+AP + + I + S+ P + + M G +L N+ Sbjct: 567 VMQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSND-- 624 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + +A+++D +I++ + Q+ IDQ+ Sbjct: 625 -----------------------------TMPYYRSAYDMDMRKVIDTYAAAQQHIDQSL 655 Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 S+ L++ + + L+ + A+ G+K+ YY+R+ Sbjct: 656 SMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705 >gi|218232459|ref|YP_002366134.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus B4264] gi|218160416|gb|ACK60408.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus B4264] Length = 682 Score = 300 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKAIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESSEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|327394923|dbj|BAK12345.1| ribonucleoside-diphosphate reductase 2 alpha subunit NrdE [Pantoea ananatis AJ13355] Length = 693 Score = 300 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 167/667 (25%), Positives = 288/667 (43%), Gaps = 67/667 (10%) Query: 265 KARLLHESMMDFDLVYLANDLKYERD---FAF-EYLGLQILYDRYFLH-INGSRI-EMPQ 318 + + +D ++ L E D FAF +LG Y Y L +G R E + Sbjct: 48 EGYYEASVLNQYDFNFVCG-LHDEADAWGFAFKTFLGAWKYYTSYTLKSFDGKRYLETFE 106 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377 VA+ LA + + +E + S F +TPT NSG + +L SCFL + Sbjct: 107 QRACMVALTLAQGDEPLARSVLE---AILSGRFQPATPTFLNSGKQQRGELVSCFLLRIE 163 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D++ I A+ L+K GG+ + +R GA I +S GVIP +K+ D Sbjct: 164 DNMESIGRAVNSALQLSKRGGGVAFLLSNLRESGAPIKRIENQSSGVIPVMKMLEDAFSY 223 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G R+GA +L H D+ FLD ++ D++ R ++ IPD+ + +N Sbjct: 224 ANQLGARQGAGAVWLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKENQ 283 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFET 556 LFSP D+ +YG+ F + + + ++ + I ++ + + FE+ Sbjct: 284 PMALFSP---YDVERIYGQAFGDISISEKYAEMLADDRIRKTYIQPRDFFQTLAEIQFES 340 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLA 609 G+P+I ++D N G ++ SNLC+EI +S+ E S NL + Sbjct: 341 GYPYIMYEDSVNR--DNPIAGRINMSNLCSEILQVNSASEFNEDLSYRRMGKDISCNLGS 398 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + D LA T+ TA+R L V D+ + ++ + N AIGLG M L Sbjct: 399 LNIAHAMDSGDLAHTVETAIRALTAVSDMSDIGSVPSVAEGNRRSHAIGLGQMNLHGYLA 458 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIG 727 I Y SPEA++ + ++++A+ AS +LA+E + + F S + G + + Sbjct: 459 REGIAYGSPEALDFTNLYFYCVTYYALRASNQLAKERQQTFDGFSASTYATGAYFDKYLQ 518 Query: 728 LLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + R + ++ W L++ V G+ N N AI PT +I+ I + Sbjct: 519 SDWQPRTARIAALFADAGISLPCHNDWLALRESVMASGLYNQNLQAIPPTGSISYINHAT 578 Query: 780 QSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 SI P + ++ +G F+ N+ Sbjct: 579 SSIHPIVSRIEIRKEGKTGRVYYPAPFMTND----------------------------- 609 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGL 897 +++ A++I P +I++ + + +DQ SL L+ D+ + + ++ AW G+ Sbjct: 610 --NLELYQDAYQIGPEAIIDTYAEATRHVDQGLSLTLFFRDDVTTRDINKAQIYAWKKGI 667 Query: 898 KTTYYLR 904 KT YY+R Sbjct: 668 KTLYYIR 674 >gi|218896384|ref|YP_002444795.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus G9842] gi|228900032|ref|ZP_04064268.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] gi|228964414|ref|ZP_04125528.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] gi|218545317|gb|ACK97711.1| ribonucleoside-diphosphate reductase, alpha subunit [Bacillus cereus G9842] gi|228795271|gb|EEM42763.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis serovar sotto str. T04001] gi|228859646|gb|EEN04070.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] Length = 682 Score = 300 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 5 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 63 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 64 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 120 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 121 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 180 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 181 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 240 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 241 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 300 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 301 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 360 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 361 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 415 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 416 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 475 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 476 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 535 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 536 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 595 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 596 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 624 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 625 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 676 >gi|157955408|gb|ABW06100.1| NrdE [Bacillus cereus] Length = 694 Score = 300 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 300/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+ GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|157955391|gb|ABW06087.1| NrdE [Bacillus thuringiensis serovar thompsoni] Length = 694 Score = 300 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFKKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|157955387|gb|ABW06084.1| NrdE [Bacillus thuringiensis serovar subtoxicus] Length = 694 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 300/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+ GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|295690403|ref|YP_003594096.1| ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] gi|295432306|gb|ADG11478.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Caulobacter segnis ATCC 21756] Length = 747 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 147/641 (22%), Positives = 242/641 (37%), Gaps = 87/641 (13%) Query: 316 MPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + + RVA +A E +E +F + L F FM + +GT L +CF Sbjct: 28 TVEDSWRRVAEAIAQAEPAEAREAWREKFLDALGDFQFMPAGRIFAGAGTGRAVTLFNCF 87 Query: 373 LT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 + T+PDDL GIF L+E A+ + GG+G D++ +R GA + G + G + F+ V Sbjct: 88 VMGTLPDDLPGIFEHLREAAVTLQQGGGVGMDFSTIRPSGAPVRGVGADASGPLSFMDVW 147 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 + + G+R+GA+ L H D+E F+D ++ + R + N + + D F++ Sbjct: 148 DSMCRTILSAGQRRGAMMGCLRIDHPDIEAFIDAKR----EPTRLRNFNLSVLVTDAFLE 203 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 + +A W L E VF+ + A LWR+++T Sbjct: 204 ALAADADWPLVFGGE-----------------------------VFKTVRASDLWRRLMT 234 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA-- 609 + P + F D N R+ + +SN C E L C LGSINL Sbjct: 235 ATYAYAEPGVIFVDRVNARNNLADCETICASNPCGEQMLPPY----GACLLGSINLARLV 290 Query: 610 ---HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 D +KLA A+R LD+VID++ +E + R +GLG+ G A Sbjct: 291 AAPFTEGAVLDEEKLAELTHVAIRFLDDVIDVSRFPLEAQAEEARAKRRLGLGVTGLADA 350 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L Y S EA + + I A AS LA E+G Y + +D Sbjct: 351 LIFCGQRYGSQEAAQTIKRWLGIIKREAYRASAALAAEKGPYPLWD-------PRVLDRP 403 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPS 785 LL D+ + + G+RN +IAPT T + + G S ++P Sbjct: 404 NLLE--------------LDDDTRALIAKHGLRNGCLTSIAPTGTTSLVAGNVSSGVEPV 449 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + + + + D + E P + Sbjct: 450 FAYAYSRKVR---------------QPDGSTRQEAVEDYALTVWKRLHGETEPPA--DVF 492 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 +A + P + + Q ID + S + + + +Y + W MG K R Sbjct: 493 VSAQTLTPREHLVMQAAAQSMIDSSISKTVNCPADIAFDAFCDVYLEGWRMGCKGLTTYR 552 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCT 945 + T S + + A T + + + Sbjct: 553 PNAVTGSVLS-VDTPPAEPPASTPEATLGETPLIARDEALS 592 >gi|212712929|ref|ZP_03321057.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM 30120] gi|212684407|gb|EEB43935.1| hypothetical protein PROVALCAL_04027 [Providencia alcalifaciens DSM 30120] Length = 710 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 175/728 (24%), Positives = 290/728 (39%), Gaps = 77/728 (10%) Query: 211 EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRY-------IEEG 263 + +Y + A L + K+ + +F + E Sbjct: 7 SRNADYHALNAMLNLYDNEGRLQLDKDKQAAYLYFRQHVNQNTVFFHDLKEKLDFLVNEK 66 Query: 264 VKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRI-EMPQAFF 321 + + L + +LG Y Y L +G R E + Sbjct: 67 YYEEEVLAQYDFPFIKQLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKRYLERYEDRV 126 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL 380 VA+ LA A F + + + F +TPT N G + +L SCFL + D++ Sbjct: 127 CMVALTLAQGSKS---LASLFVDEIITGRFQPATPTFLNCGKKQRGELISCFLLRIEDNM 183 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I ++ L+K GG+ + +R GA I +S GV+P +K+ D NQ Sbjct: 184 ESIGRSVNSALQLSKRGGGVAFLMSNLREQGAPIKQIKNQSSGVVPVMKMLEDAFSYANQ 243 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N Sbjct: 244 LGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFQLAKNNEDMY 303 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 LFSP ++ ++ + E E Y + IK F+ I+A ++ + + FE+G+P+ Sbjct: 304 LFSPYDIQKIYGVPMSEIS-VTEKYHEMVNNKAIKKFK-INAREFFQTIAEIQFESGYPY 361 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSINLL 608 I F+D N +P G ++ SNLC+EI + CNLGS+N+ Sbjct: 362 ILFEDTANRANPI--AGRINMSNLCSEILQVNQASQYEDDLSYQEIGKDISCNLGSMNIA 419 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 D A +I TA+R L V D+ N ++ K N AIGLG M L Sbjct: 420 NT-----MDSPDFALSIETAIRALTAVSDMSNIGSVPSIAKGNRQSHAIGLGQMNLHGFL 474 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI 726 HI Y S E ++ + +++HA+ S +LA E + + F+ S + G + I Sbjct: 475 AREHIHYGSEEGLDFTNIYFYTVAYHALKTSNQLAIERQQTFDGFESSSYASGEYFDKYI 534 Query: 727 GLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV 778 E+ + ++ W LK+ V T GM N N AI PT +I+ I Sbjct: 535 NNTWLPKTQTVQELFRRSGIEIPTQANWQALKQSVMTNGMYNQNLQAIPPTGSISYINNS 594 Query: 779 SQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 + SI P + ++ G F+ N Sbjct: 595 TSSIHPVVAPIEIRKEGKIGRVYYPAPFMTN----------------------------- 625 Query: 838 PDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMG 896 + + + A++I P +I++ + + +DQ SL L+ D + + ++ AW G Sbjct: 626 --ENLQFYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGNATTRDINKAQIYAWRKG 683 Query: 897 LKTTYYLR 904 +KT YY+R Sbjct: 684 IKTLYYIR 691 >gi|183601892|ref|ZP_02963261.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|241190382|ref|YP_002967776.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195788|ref|YP_002969343.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218777|gb|EDT89419.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis HN019] gi|240248774|gb|ACS45714.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250342|gb|ACS47281.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793369|gb|ADG32904.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis V9] Length = 698 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 150/685 (21%), Positives = 256/685 (37%), Gaps = 77/685 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310 E ++ + L +LG Y Y L Sbjct: 39 RERLRYLVDHHYYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYALKTFDG 98 Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 +E PQ R A E A+ + + F +TPT N G + Sbjct: 99 EHYLEDFPQ----RAAAVSLALADGDEPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 154 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I + L+K GG+ + +R GA I +S GV+P + Sbjct: 155 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 214 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R + IPD+ Sbjct: 215 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 274 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547 + + LFSP D+ +YG F + + + ++ + I A + Sbjct: 275 TFELAKRREKMALFSP---YDVERVYGVPFADVNVTAKYEEMLADDRIRKTFIDAREFFT 331 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEET 597 + + FE+G+P++ F+D N +P + V + E + Sbjct: 332 TLAEIQFESGYPYLLFEDTANAANPIDGRITMSNLCSEILQVQEPSTYYEDLSYAHVGRD 391 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656 CNLGS+N+ LA + TA+R L V + + ++N AI Sbjct: 392 VSCNLGSLNIARAMD------AGLAGPVETAIRALTAVSQHTHIGAVPSIARANEEGHAI 445 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715 GLG M L I Y SPEA++ + E ++FHA AS LA E G A++ F S Sbjct: 446 GLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFADSA 505 Query: 716 WDQGVFPIDSIGLLAE--------------VRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 + + + + + + + + W EL+ + G+ N Sbjct: 506 YARQPSDGNYFDKYLDGSLDTEPRTGTVRALFERFGVRIPTARDWRELQGEILRDGIYNQ 565 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820 A+ PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 YLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND----------- 614 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 ++ A+EI ++++ + +DQ SL L+ + Sbjct: 615 --------------------NLDLYDDAYEIGWKAIVDTYAEATPHVDQGLSLTLFFPDT 654 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + L+ AW G+KT YY+R Sbjct: 655 VTTRDLNKAQIYAWRKGIKTLYYIR 679 >gi|30019504|ref|NP_831135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus cereus ATCC 14579] gi|29895048|gb|AAP08336.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus cereus ATCC 14579] gi|157955304|gb|ABW06021.1| NrdE [Bacillus thuringiensis serovar aizawai] gi|157955327|gb|ABW06039.1| NrdE [Bacillus thuringiensis serovar entomocidus] gi|157955331|gb|ABW06042.1| NrdE [Bacillus thuringiensis serovar galleriae] gi|157955335|gb|ABW06045.1| NrdE [Bacillus thuringiensis serovar kurstaki] gi|157955343|gb|ABW06051.1| NrdE [Bacillus thuringiensis serovar tolworthi] gi|157955351|gb|ABW06057.1| NrdE [Bacillus thuringiensis serovar colmeri] gi|157955379|gb|ABW06078.1| NrdE [Bacillus thuringiensis serovar ostriniae] gi|157955395|gb|ABW06090.1| NrdE [Bacillus thuringiensis serovar tohokuensis] gi|157955404|gb|ABW06097.1| NrdE [Bacillus thuringiensis serovar wuhanensis] Length = 694 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|194468107|ref|ZP_03074093.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus reuteri 100-23] gi|194452960|gb|EDX41858.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus reuteri 100-23] Length = 723 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 158/710 (22%), Positives = 280/710 (39%), Gaps = 72/710 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 + L K + L E F E + + L LK + Sbjct: 34 KLALEDFIKNNVEPNTKNFSSL-KERFQWLEENDYIEEGFMNKYSEAFIEKLYEYLKAQN 92 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y +Y L N + RVAM E+ A++ + + Sbjct: 93 FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMQLADEIIHQ 151 Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N R + SCF DD+ I + L+K GG+G + + +R Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFALQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K Sbjct: 212 EAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V QNA LFSP +V +YG F E Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDV---ERVYGMPFSYVDITKEYD 328 Query: 529 A-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + +K++A L ++ + E+G+P+I D N +P G + SNLC+E Sbjct: 329 NLVANDDIRKKKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCSE 386 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N + + S NL + N + +I+ +R L + D+ + Sbjct: 387 IAQVQVPARVNDDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVED 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + N ++GLG MG S L HI Y SP A+E +++ ++ AS Sbjct: 447 LDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASN 506 Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKR 752 E+A+E + + F+ S + G + + + ++ W LK++ Sbjct: 507 EIAKERQETFHDFENSKYADGSYFEKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKNLKEK 566 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811 V G+ N +A+AP + + I + S+ P + + M G +L N+ Sbjct: 567 VMKDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSND-- 624 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + +A+++D +I++ + Q+ IDQ+ Sbjct: 625 -----------------------------TMPYYRSAYDMDMRKVIDTYAAAQQHIDQSL 655 Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 S+ L++ + + L+ + A+ G+K+ YY+R+ Sbjct: 656 SMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705 >gi|19745565|ref|NP_606701.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS8232] gi|19747688|gb|AAL97200.1| ribonucleoside-diphosphate reductase, large chain [Streptococcus pyogenes MGAS8232] Length = 726 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 170/751 (22%), Positives = 303/751 (40%), Gaps = 83/751 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + ++ L + I EG + + ++ + + + + Sbjct: 30 KEAVRRYLEEHVSPDQMAFNSLEDK-LAYLINEGYYEQAIFDAYPNDLIKEAFHYAYQQG 88 Query: 290 DFAFEYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 +G Y Y L +E + R M + + + + Sbjct: 89 YRFLNLMGAMKFYQSYALKTLDGKQYLETFED---RAVMNALFLADGDQTFVFDVIDAIL 145 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPT N+G + + SC+L V D++ I A+ + L+K GG+ T Sbjct: 146 HRRFQPATPTFLNAGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVALCLTN 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD + Sbjct: 206 LREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + D++ R + IPD+ + +N LFSP D+ YGK+ E Sbjct: 266 RENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDISITEE 322 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + ISA ++ + + FE+G+P++ F D N R+P G + SNLC Sbjct: 323 YDKLLANPAIKKTYISARKFFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLC 382 Query: 586 TEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI S+ E CNLGSIN+ D I T++R LD Sbjct: 383 SEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSIRALD 438 Query: 634 NVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V + + + + N + A+GLG+M L HI Y + EAV+ D +++ Sbjct: 439 RVSRVSDLNCAPSVEAGNAANHAVGLGVMNLHGFLATNHIYYDTKEAVDFTDLFFHAMAY 498 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNRTSRL 744 +A AS +LA+E+GA++ F S + G + + + + + + Sbjct: 499 YAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDVKPQTAKVATLLQDYGFTLPTVA 558 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNS 804 W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S V + Sbjct: 559 DWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRIYVPA 618 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRR 863 + +I + A+E+ P +I+ + Sbjct: 619 Y------------------------------QIDQANYAYYERGAYEVGPKAIIDVVAAA 648 Query: 864 QKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGK 922 QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + + Sbjct: 649 QKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQYDEDS 706 Query: 923 LNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 L P ++T EC+ C Sbjct: 707 LVTAPGASDETTT-------------ECQSC 724 >gi|15672957|ref|NP_267131.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis subsp. lactis Il1403] gi|12723918|gb|AAK05073.1|AE006332_2 ribonucleoside-diphosphate reductase alpha chain [Lactococcus lactis subsp. lactis Il1403] gi|326406519|gb|ADZ63590.1| ribonucleoside-diphosphate reductase alpha chain [Lactococcus lactis subsp. lactis CV56] Length = 722 Score = 300 bits (768), Expect = 8e-79, Method: Composition-based stats. Identities = 170/715 (23%), Positives = 289/715 (40%), Gaps = 81/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E +T +K+ + +E Y + ++E E + L +L Sbjct: 32 KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149 Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+ R + SCFL + DD+ I + L+K GG+G + T +R Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V + LF P V YGK F E Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 ++ + I+A L +++ + E+G+P+I D N +P GV+ SNLC+E Sbjct: 327 KMVANPEIRKTSINARELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGS N+L ++ + ++I VR L + Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSSN----EFGTSIEAMVRALTFI 440 Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + + T+ +K N AIGLG MG S L I Y S EAVE ++++ Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LPW 746 + AS +LA E+ ++ +F+ S + G + + + + W Sbjct: 501 LVASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSSKVQELFKGIAVPTIEDW 560 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 L+ VKT G+ NS MA+AP +I+ I S SI P + + G Sbjct: 561 TALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP--- 617 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L E + + +A++ D +I+ + + Sbjct: 618 ------AAGLATETI----------------------PYYKSAYDTDMRAVIDVYAAATE 649 Query: 866 WIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ ++ + + L + A+ G+KT YY+R+ Sbjct: 650 HVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|300859088|ref|YP_003784071.1| ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium pseudotuberculosis FRC41] gi|300686542|gb|ADK29464.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium pseudotuberculosis FRC41] gi|302206795|gb|ADL11137.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium pseudotuberculosis C231] gi|302331349|gb|ADL21543.1| Ribonucleoside-diphosphate reductase alpha chain [Corynebacterium pseudotuberculosis 1002] gi|308277041|gb|ADO26940.1| Ribonucleoside-diphosphate reductase subunit alpha [Corynebacterium pseudotuberculosis I19] Length = 719 Score = 300 bits (768), Expect = 8e-79, Method: Composition-based stats. Identities = 172/733 (23%), Positives = 286/733 (39%), Gaps = 71/733 (9%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 L+ + + L + R + + + H+++ E Sbjct: 16 TEQLDYHALNALLNLYNADGKIQFDKDREAANQFFLQ-----HVNQNTVFFHDLE----E 66 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 +E + E + L + +LG Y Y L +G R Sbjct: 67 KIEYLVENNYYEPGIIEKYEFAFIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRR 126 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + RV M + A + + + F +TPT NSG + SC Sbjct: 127 YLERFED---RVCMVALTLADGDQNLARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSC 183 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I ++ L+K GG+ + +R GA I +S GVIP +K+ Sbjct: 184 FLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLL 243 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 244 EDSFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDITFE 303 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKML 550 +N LFSP D+ +YGK F + + ++ + KI+A ++ + Sbjct: 304 LAKRNDDMYLFSP---YDVERVYGKAFADISVSEHYAEMVEDPRIRKSKINAREFFQTIA 360 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLG 603 + FE+G+P+I F+D N +P G V+ SNLC+EI N V Sbjct: 361 EIQFESGYPYIMFEDTVNKANPI--EGRVNMSNLCSEILQVNTPSLFNDDLTYEEVGEDI 418 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + D A TI TA+R L V + +++ +K N AIGLG M Sbjct: 419 SCNLGSLNIAMTMDSPDFAKTIETAIRGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMN 478 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 L HI Y S E ++ + + + + AS +LA+ER + F+ S + G + Sbjct: 479 LHGYLGREHIYYGSEEGLDFTNAYFAAVLYQCLVASNKLARERGRTFVGFETSKYATGEY 538 Query: 722 -----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 P D +V A + + W +LK V G+ N A+ PT +I+ Sbjct: 539 FDGFDPADFAPKTEKVAKIFADSSIYTPTAADWADLKDSVAAHGLYNRYLQAVPPTGSIS 598 Query: 774 NICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 I + SI P + ++ G + N Sbjct: 599 YINHSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDN------------------------ 634 Query: 833 NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQ 891 + A A+EI +I++ + K++DQ SL L+ + + + ++ Sbjct: 635 -------ENLDYFADAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIY 687 Query: 892 AWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 688 AWRKGIKTLYYIR 700 >gi|188025724|ref|ZP_02959589.2| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827] gi|188020254|gb|EDU58294.1| hypothetical protein PROSTU_01460 [Providencia stuartii ATCC 25827] Length = 723 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 168/674 (24%), Positives = 279/674 (41%), Gaps = 60/674 (8%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + E + E + L + +LG Y Y L +G Sbjct: 69 KEKLDFLVNENYYEPQVIEQYDFAFIKKLFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDG 128 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA V + + S F +TPT N G + +L Sbjct: 129 KRYLERYEDRVCMVALTLAQGNQALASYLV---DEIISGRFQPATPTFLNCGKKQRGELV 185 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GV+P +K Sbjct: 186 SCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMK 245 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 246 MLEDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDIT 305 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 + +N LFSP ++ + + E E Y + IK ++ I+A ++ + Sbjct: 306 FQLAKENKEMYLFSPYDIEREYGVPMSEIS-VTEKYHEMVNNKAIKKYK-INAREFFQTL 363 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN--SSSEETAVCNL----- 602 + FE+G+P+I F+D N +P G ++ SNLC+EI S E + Sbjct: 364 AEIQFESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNRPSFYEDDLSYREVGKD 421 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLM 661 S NL + D A ++ A+R L V D+ + ++ ++ NH AIGLG M Sbjct: 422 ISCNLGSMNIAKMMDAPDFAQSVAIAIRALTAVSDMSHIRSVPSIEQGNHQSHAIGLGQM 481 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGV 720 L I Y S EA++ + I++HA+ S +LA ER + F+ S + G Sbjct: 482 NLHGYLARERIHYGSEEALDFTNIYFYTITYHALKTSNQLAIERKATFKGFEHSEYANGR 541 Query: 721 FPIDSIGL--------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I + E+ + ++ W LK+ V G+ N N AI PT +I Sbjct: 542 YFDKYINQSWLPKTQTVQELFRRSGIEIPTQADWLSLKQSVMEHGIYNQNLQAIPPTGSI 601 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G F+ N+ Sbjct: 602 SYINNSTSSIHPIVARIEIRKEGKIGRVYYPAPFMNND---------------------- 639 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYR 890 + + A++I P +I++ + + +DQ SL L+ D+ + + ++ Sbjct: 640 ---------NLEYYQDAYQIGPEKIIDTYAVATQHVDQGLSLTLFFKDDATTRDINRAQI 690 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 691 YAWRKGIKTLYYIR 704 >gi|167838948|ref|ZP_02465725.1| ribonucleotide reductase system [Burkholderia thailandensis MSMB43] Length = 843 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 146/654 (22%), Positives = 263/654 (40%), Gaps = 80/654 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGDE----QTVDDIYRRVARGIAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---RRRDDGMWVYAERRARAIWDKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+D LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAQLDGGASAFDWDALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + ++ R IG+G G AL +L + Y + E + A + A Sbjct: 352 LDVTLWPLLEQRREAEQKRRIGIGFTGLGDALVMLGLRYDTQEGRDFAARVGREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA++ F S + L + D++++ ++ Sbjct: 412 RASVELARERGAFALFDASRY-------------------LEEGTFASRLPDDIQEAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 E L G G+++ +PD +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELG--GDVDALPD----CFVSALQMSAHDHLAMMAAVQPYIDTSISK 555 Query: 874 NLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 556 TVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDTLEEAD 609 >gi|157955317|gb|ABW06031.1| NrdE [Bacillus thuringiensis serovar pakistani] Length = 694 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPTKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|157955400|gb|ABW06094.1| NrdE [Bacillus thuringiensis serovar toumanoffi] Length = 694 Score = 300 bits (767), Expect = 8e-79, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+ GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + ++GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|88801651|ref|ZP_01117179.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Polaribacter irgensii 23-P] gi|88782309|gb|EAR13486.1| ribonucleoside-diphosphate reductase , alpha subunit 1 [Polaribacter irgensii 23-P] Length = 592 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 150/648 (23%), Positives = 255/648 (39%), Gaps = 124/648 (19%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFM 352 + L Y P+ +A + + + +FY +++ ++ Sbjct: 40 LTENSRKFLESGYLTGKT-----TPEERIREIADNAEGI-LKMKGFSDKFYKYMAAGYYS 93 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGA 412 S+P N G + SCF + V DD+ I + E M++K GG + +R GA Sbjct: 94 LSSPVWSNFGKKRGLPISCFGSHVADDMGDILYSQSEVGMMSKLGGGTSGYFGKLRKRGA 153 Query: 413 HIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 + NG S G + +++ V+QG R+G YL H D++EFL++ + Sbjct: 154 DVKN-NGSSSGSVHIMQLFEKMVDVVSQGSVRRGRFSPYLPVDHPDIKEFLEIGT----E 208 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 ++ + D +M+ + Sbjct: 209 GNPIQELTHGVTVSDQWMEEMIAGD----------------------------------- 233 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHV---GVVHSSNLCTEIT 589 + ++W K+L E G+P+I F+D N + + +++SNLCTEI Sbjct: 234 -------VEKRSIWAKILQRRGEIGYPYILFRDNANNGTVDVYKDKNHEIYASNLCTEIM 286 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID------------ 637 L S+ + + VC L SINL ++ K + T LD V++ Sbjct: 287 LPSNDDWSFVCCLSSINL------VHYEEWKDTDAVETLAYFLDAVMEEFITKLEVYKDS 340 Query: 638 ------INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 +EKA +RA+GLG +G+ S L + + S EA ++ E + I Sbjct: 341 SKRDDQFTFRFMEKAYNFAKDNRALGLGALGWHSLLQSKMLAFDSQEAYDLNTEIFKVIK 400 Query: 692 FHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKK 751 + AS E+A G + KG Sbjct: 401 EKSYKASEEMATLYGEPAVLKG-------------------------------------- 422 Query: 752 RVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 G RN+ AIAPT + A I G VSQ I+P + N+YVK T+ N L L Sbjct: 423 ----YGRRNTTLNAIAPTTSSAFILGQVSQGIEPIWSNIYVKDIAKIKTTIRNPVLEKLL 478 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + ++ +DGS+ ++ + D K++ T EID ++ A+ RQ IDQ Sbjct: 479 EDKGESTSDVWKSIRDNDGSVQHLAILTDAEKEVFKTYSEIDQKVIVYQAANRQNHIDQG 538 Query: 871 QSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLK 917 QS+N+ + + K+++ +Y AW +G+K+ YY S +A K Sbjct: 539 QSINIMVHPDMPIKEVNDVYITAWKLGVKSMYYQHSMNAAQKFKQKKD 586 >gi|157955359|gb|ABW06063.1| NrdE [Bacillus thuringiensis serovar darmstadiensis] Length = 694 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|157955371|gb|ABW06072.1| NrdE [Bacillus thuringiensis serovar indiana] Length = 694 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 302/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEEVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKARQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + ++GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|152964773|ref|YP_001360557.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus radiotolerans SRS30216] gi|151359290|gb|ABS02293.1| ribonucleoside-diphosphate reductase, alpha subunit [Kineococcus radiotolerans SRS30216] Length = 720 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 169/721 (23%), Positives = 284/721 (39%), Gaps = 69/721 (9%) Query: 214 PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEY---------FCRYIEEGV 264 P+Y + A L E + A + +Q + P +E G Sbjct: 20 PSYHTLNAMLNLWD--EEGKIQFEADVEAARQYFLQHVNPRTRRFPTFEARLAHMVENGY 77 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRV 324 + + + + L + + +LG Y Y L E + F R Sbjct: 78 YEQHVLDQYSPDFVRSLTDRAHAAKFRFATFLGAFKFYTSYALKSFDGT-EYLEGFEDRA 136 Query: 325 AMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGI 383 M E A + + + F +TPT N+G +L SCFL + DD+ I Sbjct: 137 VMTALTLAVGDEALATAIVDEVIAGRFQPATPTFLNAGKASRGELVSCFLLRIEDDMESI 196 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 + L+K GG+ + +R GA I +S GVIP +K+ D+ NQ G Sbjct: 197 GRGINSALQLSKRGGGVALLLSNIREYGAPIKRIQNQSSGVIPVMKLLEDSFSYANQLGA 256 Query: 444 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFS 503 R+GA YL H D+ FLD ++ D++ R ++ +PD+ + N LFS Sbjct: 257 RQGAGAVYLSAHHPDILRFLDTKRENADEKIRIKTLSLGVVVPDITFELAKNNEPMHLFS 316 Query: 504 PDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWIT 562 P D+ +YGK F + + + ++ + I A ++ + + FE+G+P+I Sbjct: 317 P---YDVERVYGKPFGDVAVSEHYREMVADDRIRKTQIDAREFFKTLAELQFESGYPYIV 373 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFANNQ 615 F+D N +P G ++ SNLC+EI ++ A S NL + Sbjct: 374 FEDTVNKANPI--AGRINMSNLCSEILQVNTPSTLAEDLTYSEIGKDISCNLGSLNIALA 431 Query: 616 FDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 D L ++ TAVR L V + ++ N AIGLG M L + Y Sbjct: 432 MDGGNLGQSVETAVRALTAVSVASDIQSVPSVAYGNSKSHAIGLGQMNLHGYLARERVHY 491 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI------- 726 S E ++ + + FHA+ AS +A ER + F+ S + G F + Sbjct: 492 GSEEGIDFTNVYFAAVLFHALRASNAIAIERGETFEGFENSKYADGTFFDKYLENDFLPA 551 Query: 727 -GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPS 785 +A + + + +R W +LK V G+ N N A+ PT +I+ I + SI P Sbjct: 552 TERVAGLFADAGIALPTRAEWAQLKASVVEHGIFNQNLQAVPPTGSISYINNSTSSIHPI 611 Query: 786 YQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 + ++ G F+ N+ + Sbjct: 612 ASKIEIRKEGKLGRVYYPAPFMTND-------------------------------NLEY 640 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYL 903 + A+EI P +I++ + + +DQ SL L+ + + + ++ AW G+KT YY+ Sbjct: 641 YQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDINRAQIYAWRKGIKTIYYI 700 Query: 904 R 904 R Sbjct: 701 R 701 >gi|75759354|ref|ZP_00739451.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493186|gb|EAO56305.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|157955363|gb|ABW06066.1| NrdE [Bacillus thuringiensis serovar dendrolimus] gi|157955375|gb|ABW06075.1| NrdE [Bacillus thuringiensis serovar morrisoni] Length = 694 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 163/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAASGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I Y S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|221316491|ref|ZP_03598296.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 568 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 167/597 (27%), Positives = 275/597 (46%), Gaps = 80/597 (13%) Query: 346 LSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 LS+ + +TPTL N+G LSSCF+ T D L GIF + + +K G+G + Sbjct: 1 LSNLYLTLATPTLMNAGRVTGGLSSCFVLTTEDSLRGIFDDNTDVSTFSKNGAGIGIYFG 60 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R G+ I G G + G++ ++K ++TAV+V+Q G+R GAV YL+ WH D+E+F+DL Sbjct: 61 KLRATGSDIRGHKGAASGILGWIKQLDNTAVSVDQLGQRPGAVAVYLDIWHKDIEDFIDL 120 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEF------- 518 R NTGD +R +++ T IPD FM++V + + LF P E+ ++F Sbjct: 121 RLNTGDKSKRAYNVFTGLCIPDEFMRQVEKRGDFYLFDPHEIKQKMGFSLEDFYDKKKLG 180 Query: 519 --------EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + A+ + R++ A+ L ++ + ETG P++ ++D N Sbjct: 181 EKETPNPIDHAWTYHYYLCVDNNNLDKRRVPAIELKKRYMKAQLETGIPYMFYRDTVNRN 240 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSE---------------------ETAVCNLGSINLLA 609 +P H G+++SSNLC+EI N S + CNL S+ + Sbjct: 241 NPNSHSGMIYSSNLCSEIAQNMSPSFVTQETINWETGEVIIHKQIGDLVTCNLSSLVVNR 300 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + + I+ +R LDNVI + + +A+ +N +RA+G G G + L Sbjct: 301 TEKDGVTE-----RVIKIQMRALDNVISLLKVPVPQAQYTNMKYRAVGAGEQGIAALLAQ 355 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 I + S +A+E + E I + I AS L +E+G+Y F+GS W G Sbjct: 356 EGIMWDSEQAIEYISKLEEKIMLNCIKASALLGKEKGSYPVFEGSKWQTG---------- 405 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + + W E+K+ MRN AIAPT + I G + IDP + + Sbjct: 406 ----EWFEERDLNSPEWLEVKELASKY-MRNGYLRAIAPTGGTSVIAGSTPGIDPIFDVI 460 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y + ++ L K + M + ++ K++ A Sbjct: 461 YFERKKDFHLPILVPELNQ--KTWFFYKPTMKMEY--------------ENEKQL---AH 501 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +W I+ + RQK++DQA S N Y+ + K ++ + W G+KT+YY RS Sbjct: 502 ----LWAIKHNAARQKFVDQAISHNFYIPQDIKAKNFYKLHMENWKAGVKTSYYTRS 554 >gi|219682806|ref|YP_002469189.1| ribonucleotide-diphosphate reductase subunit alpha [Bifidobacterium animalis subsp. lactis AD011] gi|219620456|gb|ACL28613.1| ribonucleoside-diphosphate reductase, alpha subunit [Bifidobacterium animalis subsp. lactis AD011] gi|289178105|gb|ADC85351.1| Ribonucleoside-diphosphate reductase alpha chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 708 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 150/685 (21%), Positives = 256/685 (37%), Gaps = 77/685 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--IN 310 E ++ + L +LG Y Y L Sbjct: 49 RERLRYLVDHHYYEYDVFSKYSPEFLDAFYAHADALPHRFETFLGAFKFYRSYALKTFDG 108 Query: 311 GSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 +E PQ R A E A+ + + F +TPT N G + Sbjct: 109 EHYLEDFPQ----RAAAVSLALADGDEPMAMRTLDEIVLGRFQPATPTFLNLGKAQRGEP 164 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D++ I + L+K GG+ + +R GA I +S GV+P + Sbjct: 165 VSCFLVRIEDNMESISRGINAALQLSKRGGGVALLLSNLREEGAPIKHIENQSSGVVPVM 224 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G R+GA YL H D+ +FLD ++ D++ R + IPD+ Sbjct: 225 KLLEDSFSYANQLGARQGAGAVYLHAHHPDILKFLDTKRENADEKIRIKSLALGVVIPDI 284 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547 + + LFSP D+ +YG F + + + ++ + I A + Sbjct: 285 TFELAKRREKMALFSP---YDVERVYGVPFADVNVTAKYEEMLADDRIRKTFIDAREFFT 341 Query: 548 KMLTMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEET 597 + + FE+G+P++ F+D N +P + V + E + Sbjct: 342 TLAEIQFESGYPYLLFEDTANAANPIDGRITMSNLCSEILQVQEPSTYYEDLSYAHVGRD 401 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAI 656 CNLGS+N+ LA + TA+R L V + + ++N AI Sbjct: 402 VSCNLGSLNIARAMD------AGLAGPVETAIRALTAVSQHTHIGAVPSIARANEEGHAI 455 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSL 715 GLG M L I Y SPEA++ + E ++FHA AS LA E G A++ F S Sbjct: 456 GLGQMNLHGFLAREGIRYGSPEALDFTNMYFETVAFHAYRASHALAVENGHAFARFADSA 515 Query: 716 WDQGVFPIDSIGLLAE--------------VRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 + + + + + + + + W EL+ + G+ N Sbjct: 516 YARQPSDGNYFDKYLDGSLDTEPRTGTVRALFERFGVRIPTARDWRELQGEILRDGIYNQ 575 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAM 820 A+ PT +I+ I + SI P + ++ G ++ N+ Sbjct: 576 YLQAVPPTGSISYINHATSSIHPIASKIEIRKEGKIGRMYYPAPYMTND----------- 624 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 ++ A+EI ++++ + +DQ SL L+ + Sbjct: 625 --------------------NLDLYDDAYEIGWKAIVDTYAEATPHVDQGLSLTLFFPDT 664 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + L+ AW G+KT YY+R Sbjct: 665 VTTRDLNKAQIYAWRKGIKTLYYIR 689 >gi|330889423|gb|EGH22084.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. mori str. 301020] Length = 264 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 144/266 (54%), Positives = 185/266 (69%), Gaps = 20/266 (7%) Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 GAY +F+GSLW +G+ P+DS +L E R + ++ L W ++ RV+ G+RNSN Sbjct: 2 GAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETLDWAPVRARVQK-GIRNSNI 60 Query: 764 MAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 MAIAPTATIANI GVSQSI+P+YQNLYVKSN+SG+FTV+N +LV +LK RDLWD MI+D Sbjct: 61 MAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMIND 120 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGK 883 LKY+DGS+ IERIP +LK+++ATAFE+D W++++ASRRQKWIDQAQSLNLY+ SGK Sbjct: 121 LKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGK 180 Query: 884 KLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVT-------------- 929 KLD YR AW GLKT YYLR+ +ATS EKST+ GKLNAV Sbjct: 181 KLDVTYRMAWYRGLKTPYYLRALAATSTEKSTVN--TGKLNAVSSGGHGPDDSAITAPRP 238 Query: 930 DPNSSTHSLGIPSSC-TSDTECEVCQ 954 + +P +C + +CE CQ Sbjct: 239 TEAAPVGPAPVPKACAIDEPDCEACQ 264 >gi|311068262|ref|YP_003973185.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus atrophaeus 1942] gi|310868779|gb|ADP32254.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus atrophaeus 1942] Length = 700 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 153/697 (21%), Positives = 290/697 (41%), Gaps = 58/697 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E +E D+ + ++ Sbjct: 30 KEAVHSYFVDYINQNTVFFHDL-KEKLDYLVENQYYEEEFLSLYSFADIKEVFKTAYAKK 88 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y+ Y L N +E + R+++ ++A ++ L+ Sbjct: 89 FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDTEKAKDYVRLMI 145 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + STPT N+ R +L SCFL V D L I A+ + L+K GG+ + + Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +FLD + Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K + D+ R ++ IPD F++ ++ +F P + YG+ + N Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEM 322 Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V + KI+A L K+ + E+G+P+I F+D N HV V SNLC Sbjct: 323 YDKFVDNPRVKKEKINARKLLEKLAVLRSESGYPYIMFQDNVNKEHALNHVSKVKFSNLC 382 Query: 586 TEITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +E+ + +E L S NL + N ++ + T++ A L +V + Sbjct: 383 SEVLQASQVSSYTDYDEEDEIGLDISCNLGSLNILNVMEHKSIEHTVKLATDSLTHVSET 442 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +++N ++IGLG M L I Y SPEA + A+ ++F++I Sbjct: 443 TDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQR 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELK 750 S ELA+E+G + ++GS + G + D ++ M+ + W +LK Sbjct: 503 SAELAKEKGATFEQYEGSSYATGEYFDKYVSNDFSPAYEKIAALFEGMHIPTIEDWKQLK 562 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 V GM +S + IAPT +I+ + + S+ P + + ++ + Sbjct: 563 AFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP-------- 614 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + A+++D +++ + Q+ IDQ Sbjct: 615 -----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQG 651 Query: 871 QSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 S L+L + + + L+ I A G+KT YY R++ Sbjct: 652 ISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|325571549|ref|ZP_08147049.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus casseliflavus ATCC 12755] gi|325156025|gb|EGC68221.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus casseliflavus ATCC 12755] Length = 719 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 156/710 (21%), Positives = 276/710 (38%), Gaps = 74/710 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + + L L + Sbjct: 32 KEALAAFFKENVEPNTLTFATATDK-INYLIENDYLEEEFIKKYRPAFIEDLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FTFKSFMAAYKFYSQYALKTNDGTAYLERYED---RVAFNALYFADGNEELAMSLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + Sbjct: 148 YQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V YG F E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKE---YGVPFSYVDITKE 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 ++ + I A L ++ + E+G+P+I D N G + SNLC Sbjct: 325 YDNLVMNPRIRKTKIRARDLENEISKLQQESGYPYIINIDTANR--SNPIDGKIIMSNLC 382 Query: 586 TEITLNSSSEE-------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +EI + E + S NL + N D ++R R L V D Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIVNLMDSPDFGKSVRAMTRALTFVTDA 442 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + + N + IGLG MG + + Y SPE++E D +++ + Sbjct: 443 SDIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNYWTLVE 502 Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELK 750 S +A+E+ + +F+ S + G + D I + + E + + W L Sbjct: 503 SNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPTGEDWAALA 562 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809 + VK G+ + N +A+AP +I+ I S SI P + + + G +L NE Sbjct: 563 QTVKETGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSNE 622 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + +A+++D +I+ + QK +DQ Sbjct: 623 TIG-------------------------------YYKSAYDMDMRKVIDVYATAQKHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 S+ L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 652 GMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|55821275|ref|YP_139717.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus thermophilus LMG 18311] gi|55823188|ref|YP_141629.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus thermophilus CNRZ1066] gi|116628013|ref|YP_820632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus thermophilus LMD-9] gi|55737260|gb|AAV60902.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus LMG 18311] gi|55739173|gb|AAV62814.1| ribonucleotide reductase alpha subunit [Streptococcus thermophilus CNRZ1066] gi|116101290|gb|ABJ66436.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Streptococcus thermophilus LMD-9] gi|312278605|gb|ADQ63262.1| Ribonucleoside-diphosphate reductase [Streptococcus thermophilus ND03] Length = 719 Score = 300 bits (767), Expect = 1e-78, Method: Composition-based stats. Identities = 158/716 (22%), Positives = 283/716 (39%), Gaps = 86/716 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + K + + IE + L+ ++ ++ Sbjct: 32 KEALRAFFLENVKPNSMAFNSITDK-INYLIENDYIESEFIGKYEPAFIEKLSAEIHAQK 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N + +E + RV E A + N + Sbjct: 91 FRFQSFMAAYKFYQQYALKTNDGETYLESFED---RVLFNALYFADGDENLASDLANEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP + + + Y+ Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSIEKEYGK-PYNYIDITAMYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I + I+A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIINIDTANRHNPI--DGKIVMSNLCS 383 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + E CNLGS N+L + +I+T R L Sbjct: 384 EILQVQTPSELNDSQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALTF 438 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N GLG MG S L HI Y SPE++E + +++ Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESIEFTNIYFMLMNYW 498 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744 + S +A+E + + F+ S + G + + + E+ + + + Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRVKELFEGHFIPQA--K 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP- 615 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + D + +A+++D +I+ + Sbjct: 616 ------------------------------ANGLSTDTIPFYTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKLTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|296330953|ref|ZP_06873428.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674471|ref|YP_003866143.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] gi|296151958|gb|EFG92832.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412715|gb|ADM37834.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus subtilis subsp. spizizenii str. W23] Length = 700 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 151/697 (21%), Positives = 289/697 (41%), Gaps = 58/697 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E IE D+ + ++ Sbjct: 30 KEAVHSYFVDYINQNTVFFHDL-KEKLDYLIENQYYEEEFLSLYSFEDIKAVFKTAYAKK 88 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y+ Y L N +E + R+++ ++A E+ NL+ Sbjct: 89 FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDTEKAKEYVNLMI 145 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + STPT N+ R +L SCFL V D L I A+ + L+K GG+ + + Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +FLD + Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K + D+ R ++ IPD F++ ++ +F P + YG+ + N Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKE---YGQHMDEMDMNEM 322 Query: 527 RQADRGEIKVFR-KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 +V + KI+ L K+ + E+G+P+I F+D N H+ V SNLC Sbjct: 323 YDKFVDNPRVKKEKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNHISKVKFSNLC 382 Query: 586 TEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +E+ S E + S NL + N ++ + T++ A L +V + Sbjct: 383 SEVLQASQVSSYTDYDVEDEIGLDISCNLGSLNILNVMEHKSIEKTVKLATDSLTHVSET 442 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + +++N ++IGLG M L I Y SPEA + A+ ++F++I Sbjct: 443 TDIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQR 502 Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELK 750 S E+A+E+ + ++GS + G + D ++ + M+ + W +LK Sbjct: 503 SAEIAKEKGETFDQYEGSTYATGEYFDKYVSTDFSPKYEKIANLFEGMHIPTTEDWKQLK 562 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL 810 V GM +S + IAPT +I+ + + S+ P + + ++ + Sbjct: 563 AFVAEHGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP-------- 614 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + + A+++D +++ + Q+ +DQ Sbjct: 615 -----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHVDQG 651 Query: 871 QSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 S L+L + + + L+ I A G+KT YY R++ Sbjct: 652 ISFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|258654101|ref|YP_003203257.1| vitamin B12-dependent ribonucleotide reductase [Nakamurella multipartita DSM 44233] gi|258557326|gb|ACV80268.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Nakamurella multipartita DSM 44233] Length = 988 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 126/654 (19%), Positives = 229/654 (35%), Gaps = 62/654 (9%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYG 382 V G E + E E +L F ++P FN GT+ Q+S+CF+ +V D + Sbjct: 124 VEHGYFATEQDTEIFEHELTWMLLHQVFAFNSPVWFNVGTKSPQQVSACFILSVDDTMDS 183 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I +E ++ K G G + + +R + G + G + F++ A+ +A + G Sbjct: 184 ILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGG 242 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTA 482 R+ A L+ H D+ EF++ + R + + N + Sbjct: 243 ATRRAAKMVVLDVDHPDIAEFVETKAREEHKIRVLRDAGFDMDLGGDDIISVQYQNANNS 302 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 + D FM+ V + +V + A Sbjct: 303 VRVSDEFMRAVDADTDEGASFGLRARQT-----------------------GEVIETVDA 339 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL 602 L+ K+ +E P I + D N G + +SN C+E + + CNL Sbjct: 340 RELFGKITQAAWECADPGIQYDDTINDWHTSPESGRISASNPCSEYMH----LDNSSCNL 395 Query: 603 GSINLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 S+NL+ + FD A + + +D I + ++ +R +G+G Sbjct: 396 ASLNLMKFLSEDGTFDAPTFARAVEFVITAMDISICFADFPTQPIAETTRAYRQLGIGYA 455 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVF 721 + L Y S +A ++ A S ELA G Y + + Sbjct: 456 NLGALLMATGHAYDSEGGRSLAAAITSLMTGVAYRRSAELAGVVGPYEGYARNADAHKRV 515 Query: 722 PIDSIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG 777 VR ++ A+ + + W + + G RN+ +APT TI + Sbjct: 516 IRKHAAANDYVRSIGGNDGAVLKLATTVWQDTVAIGERNGYRNAQASVLAPTGTIGLMMD 575 Query: 778 V-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGN 833 + I+P + + K G +VN + LK E++ + ++Y G + + Sbjct: 576 CDTTGIEPDLALVKFKKLVGGGSMQIVNQTVPGALKSLGYQAESIEAIVEYIAEHGHVVD 635 Query: 834 IERIPDDLKKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 + + + A I PM + + Q +I A S + + E + + IY Sbjct: 636 APGLRREHYSVFDCAMGERSIAPMGHVRMMAAVQPFISGAISKTVNMPEHATVADVAEIY 695 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 +Q W MGLK R S G+ +A + + Sbjct: 696 QQGWKMGLKALAIYRDNCKVGQPLSASNKNHGEKSADASVGAAAEVTAAPAAPV 749 >gi|171060924|ref|YP_001793273.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Leptothrix cholodnii SP-6] gi|170778369|gb|ACB36508.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Leptothrix cholodnii SP-6] Length = 1007 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 151/637 (23%), Positives = 238/637 (37%), Gaps = 75/637 (11%) Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDD 379 RVA LA E +E F F+ + +GT L +CF+ V D Sbjct: 59 RVAAALASVEAPEARELWTERFL-AAQERGFVPAGRIASAAGTTLSATLINCFVQPVGDS 117 Query: 380 -------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 GI+ AL E A + GG+G D++ +R GA + T + G + +++V + Sbjct: 118 IAEPEEGFPGIYTALTEAAETMRRGGGVGYDFSRIRPYGAWVGSTQSHASGPVSYMRVFD 177 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA L H DVE F+ + D+ + N + + D+FMK Sbjct: 178 RSCETVESAGSRRGAQMGVLRCDHPDVEAFIHAK-----DKGDLKNFNISVGVTDVFMKA 232 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V + L E + G + + V+R + A LW +++ Sbjct: 233 VEADTDVDLVHKAEPGEKQKAAG-----------ARQRADGLWVYRSVRARDLWDQIMRS 281 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++ P + F D N + + + ++N C E L C LGS++L Sbjct: 282 TYDHAEPGVLFLDRINQDNNLSYCETIAATNPCAEQPLPPY----GCCCLGSVDLTHFVQ 337 Query: 613 NNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 FD A TA R+LDNV+D + ++ R +GLG G AL Sbjct: 338 RPFESDASFDDAAFAEVCATATRMLDNVLDATVWPLPAQQQEAANKRRVGLGFTGLGDAL 397 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L + Y +P A +A E + A AS +LAQERGA+ F L+ G Sbjct: 398 IMLGLRYDTPAARAMATHISEVMRDAAYIASSDLAQERGAFPLFNADLYLSG-------- 449 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPS 785 N + +K+ ++ G+RNS+ ++IAPT TI+ S I+P Sbjct: 450 -----------NSFASRLPAAVKEHIRVNGLRNSHLLSIAPTGTISLAFADNASNGIEPP 498 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + D T F V + R +++ L Sbjct: 499 FSWTYTRKKREADGTFK-EFAVEDHAWRLY----------------RHLKGADAPLTDAF 541 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 TA E+ + ID + S + + + + +Y AW GLK R Sbjct: 542 VTALEMSAEAHESMVAAVAPCIDTSISKTVNVPADYPYEDFQGLYMAAWKSGLKGLATYR 601 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 S S V P + SLG P Sbjct: 602 PNSVLGSVLSVTPTVPVVAETAATPQPLTVPVSLGTP 638 >gi|189490616|ref|YP_001957186.1| hypothetical NrdA [Pseudomonas phage 201phi2-1] gi|164609681|gb|ABY63290.1| hypothetical NrdA [Pseudomonas phage 201phi2-1] Length = 764 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 175/823 (21%), Positives = 305/823 (37%), Gaps = 84/823 (10%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204 I+ DGT FN+ + E L+D V ++ ET + + + +S + ALI Sbjct: 4 NIIKLDGTQEPFNAAKANRWCEWGTENLKDKVDWSSIVMETIQTLPETVSSQAFQMALIE 63 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 + TL + ++ R + + + T KA H MQ Sbjct: 64 N--TLSHRTWSHYLFAGRLYAVWIHKHLYGTDGIPTVKALHTRMQK-------------- 107 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYF--LHINGSRIEMPQAFFM 322 ++ D + + +K++ DF + L + +Y + G+ E PQ ++ Sbjct: 108 DGLMVKLKYNTQDYLKIEKFIKHDLDFEQPHFALHQIRKKYALGNRVTGAEYESPQFTYI 167 Query: 323 RVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 R+AM LA E + + + +FY L + TP N GT H +SC L V D+ Sbjct: 168 RMAMALAENEPKATRLQVVRDFYELFAYKKLSAPTPNYINLGTSHRGFASCCLFAVGDNG 227 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 + + + S G+G + R +G + G G + + VA Q Sbjct: 228 TSLALGNYIGDKMTQMSAGIGVNIM-TRAVGDAVRGGLFAHHGKKKYYDAMGKSIVANVQ 286 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWT 500 G+ GAV + E++ +VE LR RR DM+ A F K+ N Sbjct: 287 AGRG-GAVTCFFESFDQEVEMIQGLRNPLSTPDRRNRDMHFAMLTNRFFAKKAASNEQIF 345 Query: 501 LFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPW 560 F+P DLH+ + + + + ++ E +SA + R+ L ETG + Sbjct: 346 AFNPYTAPDLHEAFYGKDIEEFIRLYEKYEKDESFTKHWMSARDILRRSLKEAQETGVAY 405 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE----------ETAVCNLGSINLLAH 610 + D N +P + +HSSNLC EI +S + + + +L A Sbjct: 406 VGQIDEMNRHTPF--LDPIHSSNLCMEIAEPTSPYYEMEDLVSREDHGRGEIATCSLAAV 463 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 N + + A++++D I + + I + + + G+G+MG + L Sbjct: 464 SVENIENDKEYEKVCYYALKMIDYCILNSTYVIPHLEFTAKQRMSAGVGMMGLATHLAKN 523 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLA 730 + Y S E + I AS+ +++ERG + W G PID+ Sbjct: 524 GLDYTSNAGKREIHWIAERHMYFMIKASIAISKERGLAPWIHKTKWPAGWLPIDTYQRAV 583 Query: 731 EVR-DELAMNRTSRLPWDELKKRVKTIG-MRNSNCMAIAPTATIANICGVSQSIDPSYQN 788 + D + W++L+ V G + +S +A P + + G + SI P + Sbjct: 584 DNIIDPKGSSFDYTYNWEKLRAEVVANGGIAHSVLIAYMPGESSSKALGGANSIYPVRRL 643 Query: 789 LYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATA 848 L + D + + D S+ + A Sbjct: 644 --------------------TLSKNDQNNHLYWAAPYGDDPSV------------KYQFA 671 Query: 849 FEIDPMWLIESASRRQKWIDQAQSLNLY-----LDEPSGKKLDFIYRQAWLMGLKTTYYL 903 ++I LI+ + QK+ DQ S + Y +E +L Y MG+KT YY Sbjct: 672 WDIPTKDLIDCYAIFQKFTDQGISADFYRRIVGTEEIDSNELLKDYFYMVKMGMKTRYYF 731 Query: 904 RSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTS 946 +T + L A+ NS ++ CT Sbjct: 732 ----------NTETTANLSLEAMESAIDNSGNAAMCSADGCTL 764 >gi|257865183|ref|ZP_05644836.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257871508|ref|ZP_05651161.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257874805|ref|ZP_05654458.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|257799117|gb|EEV28169.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257805672|gb|EEV34494.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257808971|gb|EEV37791.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] Length = 719 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 156/710 (21%), Positives = 276/710 (38%), Gaps = 74/710 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + + L L + Sbjct: 32 KEALAAFFKENVEPNTLTFATA-MDKINYLIENDYLEEEFIKKYRPAFIEQLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FTFKSFMAAYKFYSQYALKTNDGTAYLERYED---RVAFNALYFADGNEELAMSLADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + Sbjct: 148 YQRYQPATPSFLNAGRKRRGELVSCFLIQITDDMNAIGRGINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V YG F E Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEEMYLFSPYSVEKE---YGVPFSYVDITKE 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 ++ + I A L ++ + E+G+P+I D N G + SNLC Sbjct: 325 YDNLVMNPRIRKTKIRARDLENEISKLQQESGYPYIINIDTANR--SNPIDGKIIMSNLC 382 Query: 586 TEITLNSSSEE-------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +EI + E + S NL + N D ++R R L V D Sbjct: 383 SEILQVQAPSEINGKQEYEVLGTDISCNLGSTNIVNLMDSPDFGKSVRAMTRALTFVTDA 442 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + + N + IGLG MG + + Y SPE++E D +++ + Sbjct: 443 SDIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNYWTLVE 502 Query: 698 SVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELK 750 S +A+E+ + +F+ S + G + D I + + E + + W L Sbjct: 503 SNAIAKEKGEVFHNFEKSAYADGSYFTDYIQGDYQPKSEKVKALFEGVFLPTGEDWAALA 562 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809 + VK G+ + N +A+AP +I+ I S SI P + + + G +L NE Sbjct: 563 QTVKETGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSNE 622 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 + +A+++D +I+ + QK +DQ Sbjct: 623 TIG-------------------------------YYKSAYDMDMRKVIDVYATAQKHVDQ 651 Query: 870 AQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 S+ L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 652 GMSMTLFMRSDIPEGLYEWKETTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|126802153|ref|YP_068342.2| ribonucleotide reductase subunit 1 [Suid herpesvirus 1] Length = 790 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 164/648 (25%), Positives = 280/648 (43%), Gaps = 55/648 (8%) Query: 302 YDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYNLLSSF 349 + Y + R E FF+R +A+ L + E ++ L++ Sbjct: 153 EEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFD-AYFRALATQ 211 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP + +G L+SC+L + E A + GG+G Sbjct: 212 AIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLSLQSF 271 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR- 466 + ++G++ LK + A+N +R VC Y+E WH DV L++R Sbjct: 272 NRT-----PSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRG 326 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEI 520 D+ R ++ + W PDLF +R + WTLF D S L L+G +F Sbjct: 327 MLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAR 385 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-V 579 YE ER E + + ++ TG P++ KD CN G + Sbjct: 386 EYERLERLGLGVE-----SLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDTRGAAL 440 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +SNLCTEI ++ E VCNL S+NL A A FD+ L R A ++ ++ I Sbjct: 441 ATSNLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIG 500 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + R++G+GL G + + L + A P A + E + + + ASV Sbjct: 501 NYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASV 560 Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 EL + + F+ S + +GV P D+ +++ R WD L+ R+ G+ Sbjct: 561 ELCERGLRPFDGFEHSRYARGVMPFDAYER-------VSLREPMR--WDALRVRIAEHGV 611 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDL 815 N+ +A+ PT + + + S+ P++ N++ K +SG+ N L+ L++ R+ Sbjct: 612 YNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPREC 671 Query: 816 WDEAMISDLKYHDGSIGNI-ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 ++ L+ S+ +P TAFE D LI+ + R ++D +QS+ Sbjct: 672 ARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCADRAPFVDHSQSM 731 Query: 874 NLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATSVEKST 915 +L+L EP+ KL + +A+ +GLKT YY + R AT+ T Sbjct: 732 SLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGVFT 779 >gi|238059797|ref|ZP_04604506.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora sp. ATCC 39149] gi|237881608|gb|EEP70436.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Micromonospora sp. ATCC 39149] Length = 611 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 165/655 (25%), Positives = 254/655 (38%), Gaps = 87/655 (13%) Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEK-------EKRAVEFYNLLSSFHFMC 353 L R RIE RVA GL E E A F L++ F Sbjct: 18 LGRRVTGPDGAVRIESVDDLLDRVATGLGAVEREYGADESTARVWAARFRALMAENRFWP 77 Query: 354 STPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 S L N GTR QL+SCF+ V DDL IF L+ A + GG G D TP+R GA Sbjct: 78 SGRILNNCGTRQGQLASCFVLPVEDDLGAIFDTLKLAASCHRTGGGTGFDLTPLRERGAP 137 Query: 414 IHGTNGK-SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDD 472 I S G + +L + + V QGGK +GA A L H DV EF+D + G Sbjct: 138 ISTAEAAGSSGPVSWLHLFDAETGVVMQGGKMRGANLASLSVRHPDVFEFIDAKAVVG-- 195 Query: 473 RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG 532 R + N + + D FM+ + L SP Sbjct: 196 --RLANFNLSVTVDDAFMRTLIDGGEIDLVSP---------------------------V 226 Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-VGVVHSSNLCTEITLN 591 + R++ A +WR++ + TG P + F D N +P +G + ++N C E TL Sbjct: 227 GGRPRRRVPAAEIWRRISAQAWRTGDPGLLFTDMINRANPLLDRLGPIRTTNPCGEQTLY 286 Query: 592 SSSEETAVCNLGSINL-LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 LGS+NL + + D +L T+ AVR+LDN ID + + + Sbjct: 287 PYEPS----TLGSVNLRAMTGPDGRLDTARLERTVEDAVRLLDNSIDASHYPDPRITAMA 342 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 +R +GLG+MGF L L + Y S A+ + DE I A + + LA ERG + + Sbjct: 343 RGNRRLGLGVMGFADLLIALGVRYDSTRALAVVDEVGGRIRAVAEATTRRLAAERGTFPN 402 Query: 711 FKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 F + +D +RN IAPT Sbjct: 403 FDPARFDAP--------------------------------------VRNCAVTTIAPTG 424 Query: 771 TIANICGVSQSIDPSYQNLYVKSNM-SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 TI+ + G S I+P + ++ K+ + G + V+ L ++ D L Sbjct: 425 TISMVAGCSSGIEPRFAPIWRKNVLVDGGVSYVDEDLAADVCAHGGVDPEQARRLIRER- 483 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFI 888 + + +P+ ++ + A ++ W + A++ Q+ ID A S + L + S + + Sbjct: 484 PVTELP-MPEPVRDRYRYAHDVPGEWHVRIAAQWQRHIDNAVSKTVNLPRDCSVDDVAEV 542 Query: 889 YRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 +W +G K R S + G P+ + G + Sbjct: 543 LTASWRLGCKGVSVYRQGSREQDLQEVAGARTGTDRPTPLAGDAGTGIDTGTGAV 597 >gi|1710393|sp|P50643|RIR1_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|437736|emb|CAA50976.1| ribonucleotide reductase [Suid herpesvirus 1] gi|525264|emb|CAA56775.1| ribonucleotid reductase, large subunit [Suid herpesvirus 1] gi|40253967|tpg|DAA02162.1| TPA_exp: large subunit of ribonucleotide reductase [Suid herpesvirus 1] gi|1090509|prf||2019240A ribonucleotide reductase:SUBUNIT=large Length = 835 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 164/648 (25%), Positives = 280/648 (43%), Gaps = 55/648 (8%) Query: 302 YDRYFLHINGSRIEMPQAFFMR------------VAMGLALKETEKEKRAVEFYNLLSSF 349 + Y + R E FF+R +A+ L + E ++ L++ Sbjct: 198 EEMYLARLEHGRCEAMDQFFVRLAAAAATATRRPMALVLCGSDAWPEVFD-AYFRALATQ 256 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL--YGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP + +G L+SC+L + E A + GG+G Sbjct: 257 AIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGVGLSLQSF 316 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR- 466 + ++G++ LK + A+N +R VC Y+E WH DV L++R Sbjct: 317 NRT-----PSGDCTRGIMAVLKALDSMTAAINSDSERPTGVCVYVEPWHADVRAVLNMRG 371 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRV------TQNAGWTLFSPDEVSDLHDLYGKEFEI 520 D+ R ++ + W PDLF +R + WTLF D S L L+G +F Sbjct: 372 MLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLFD-DRASHLASLHGPDFAR 430 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-V 579 YE ER E + + ++ TG P++ KD CN G + Sbjct: 431 EYERLERLGLGVE-----SLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDTRGAAL 485 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN 639 +SNLCTEI ++ E VCNL S+NL A A FD+ L R A ++ ++ I Sbjct: 486 ATSNLCTEIVQRATPGENGVCNLASVNLPACLAGGAFDFAALRRAARVAAVFVNAMMRIG 545 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + + R++G+GL G + + L + A P A + E + + + ASV Sbjct: 546 NYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASV 605 Query: 700 ELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 EL + + F+ S + +GV P D+ +++ R WD L+ R+ G+ Sbjct: 606 ELCERGLRPFDGFEHSRYARGVMPFDAYER-------VSLREPMR--WDALRVRIAEHGV 656 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ---RDL 815 N+ +A+ PT + + + S+ P++ N++ K +SG+ N L+ L++ R+ Sbjct: 657 YNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPREC 716 Query: 816 WDEAMISDLKYHDGSIGNI-ERIPDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 ++ L+ S+ +P TAFE D LI+ + R ++D +QS+ Sbjct: 717 ARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCADRAPFVDHSQSM 776 Query: 874 NLYLDEPSGKKLDF-----IYRQAWLMGLKT-TYYLRSRSATSVEKST 915 +L+L EP+ KL + +A+ +GLKT YY + R AT+ T Sbjct: 777 SLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGVFT 824 >gi|117620070|ref|YP_855408.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561477|gb|ABK38425.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 715 Score = 299 bits (765), Expect = 2e-78, Method: Composition-based stats. Identities = 149/668 (22%), Positives = 268/668 (40%), Gaps = 63/668 (9%) Query: 282 ANDLKYERDFAFE-YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAV 340 A+ L +D +FE + L + + I+G+ E Q RVA+ LA +E++ + Sbjct: 13 ASRLIPLQDTSFEIWDSKYRLKSKDGVPIDGTIDETCQ----RVALALAGQESQPDVWYE 68 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAK 395 F L + + N+G + +C ++ T+ D + I G + E + K Sbjct: 69 PFLWALRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLK 127 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 G+G D++ +R GA + G + G + F+ + + V+ G R+GA ++ Sbjct: 128 AGCGIGYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIR 187 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS------- 508 H DV EF+ ++ + R N + I + F+K V ++A W L P Sbjct: 188 HPDVVEFIQAKR----EDGRLRQFNLSLLITEEFVKAVKEDAPWQLIFPYTAREVEQDGI 243 Query: 509 ---DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKD 565 D ++ ++ + + KV++ + A LW ++T ++ P D Sbjct: 244 TLDDPTQVFWADWPNREGVVFNELGQVACKVYKTLPARKLWNVIMTSTYDYAEPGFILID 303 Query: 566 PCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDK 620 N + + ++N C E L C LGS+NL + FD+ Sbjct: 304 KVNQMNNNWFCEEIRATNPCGEQPLPPY----GACLLGSVNLTRFVRDPFAEQAAFDWSA 359 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 + R+LDNV++IN + + ++ + R G+G +G SAL +L I Y S AV Sbjct: 360 FRKVVAIFTRMLDNVVEINQLPLARQREEIISKRRHGMGFLGLGSALTMLRIKYGSAAAV 419 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVR 733 ++ + ++ S+ LA+E+G + G D I L +V+ Sbjct: 420 AFTEQVSQELAMTGWRESLALAKEKGPAPIMEQEFEVTGKLLRLRPEMAADGIKLGDKVK 479 Query: 734 DELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPS 785 ++ R SR L + +G R ++ +IAPT TI+ S I+PS Sbjct: 480 GKVLHARYSRYMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPS 539 Query: 786 YQNLYVKSNMS---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 + + Y ++ + V+ + L R+L + A + E L Sbjct: 540 FAHHYSRNVIKPGKKSKESVDVYSYELLAYRELVNPAAMPY----------AEDEATRLP 589 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTY 901 TA +I P ++ + Q+WID + S + + ++ IY A GLK Sbjct: 590 DYFITADDISPAQHVDIQAAAQRWIDSSISKTANVPTDFPFEQFKDIYLYASDSGLKGCT 649 Query: 902 YLRSRSAT 909 R A Sbjct: 650 TFRFNPAA 657 >gi|148543560|ref|YP_001270930.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri DSM 20016] gi|184152967|ref|YP_001841308.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri JCM 1112] gi|227363480|ref|ZP_03847602.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM2-3] gi|325681910|ref|ZP_08161428.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM4-1A] gi|148530594|gb|ABQ82593.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus reuteri DSM 20016] gi|183224311|dbj|BAG24828.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus reuteri JCM 1112] gi|227071494|gb|EEI09795.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM2-3] gi|324978554|gb|EGC15503.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus reuteri MM4-1A] Length = 723 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 158/709 (22%), Positives = 284/709 (40%), Gaps = 70/709 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 + L K + L E F E + + L + LK + Sbjct: 34 KLALEDFIKNNVEPNTKRFSSL-KERFQWLEENDYIEETFMNKYSEAFIEKLYDYLKAQN 92 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y +Y L N + RVAM E+ A++ + + Sbjct: 93 FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMQLADEIIHQ 151 Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N R + SCF DD+ I + L+K GG+G + + +R Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K Sbjct: 212 EAGAPIKKIQGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V QNA LFSP +V ++ + +I E Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSYVDITKEYNNLV 331 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 A+ K +K++A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 332 ANDDIRK--KKVNARDLEDEISKLQQESGYPYIINIDTENRDNPIN--GKIVMSNLCSEI 387 Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NC 640 N + + S NL + N + +I+ +R L + D+ + Sbjct: 388 AQVQVPAQVNDDQSYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVEDL 447 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + + N ++GLG MG S L HI Y SP A+E +++ ++ AS E Sbjct: 448 DVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQYGSPVAIEFTGVYFMLLNYWSLVASNE 507 Query: 701 LAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRV 753 +A+E + + F+ S + G + + + ++ W +LK+ V Sbjct: 508 IAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDWKKLKENV 567 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812 G+ N +A+AP + + I + S+ P + + M G +L N+ Sbjct: 568 MQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSND--- 624 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +A+++D +I++ + Q+ IDQ+ S Sbjct: 625 ----------------------------TMPYYRSAYDMDMRKVIDTYAAAQQHIDQSLS 656 Query: 873 LNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + L++ + + L+ + A+ G+K+ YY+R+ Sbjct: 657 MTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRT 705 >gi|54309322|ref|YP_130342.1| hypothetical protein PBPRA2142 [Photobacterium profundum SS9] gi|46913758|emb|CAG20540.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 716 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 143/658 (21%), Positives = 263/658 (39%), Gaps = 62/658 (9%) Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLA--LKETEKEKRAVEFYNL 345 D A++ ++I +Y L E F RVA LA K+ KE EF Sbjct: 15 DIAYQSTSMEIWDSKYRLKTKHGIAIDETVDDTFKRVARALADLEKDKVKEHWYNEFLWA 74 Query: 346 LSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGL 400 L + + N+G + +C ++ T+ D + I G + E + K G+ Sbjct: 75 LRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGI 133 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G D++ +R GA + G + G + F+ + + V+ G R+GA ++ H D+ Sbjct: 134 GYDFSTLRPRGAFVAGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDII 193 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV----------SDL 510 +F+ ++ + R N + I + F++ V + W+L P Sbjct: 194 DFIRAKR----EDGRLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDNLDLHTD 249 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + ++ + E + R K++R + A LW ++T ++ P D N Sbjct: 250 SSVMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQM 309 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625 + + ++N C E L C LGSINL + FD+D + Sbjct: 310 NNNWFCEEIRATNPCGEQPLPPY----GACLLGSINLTKFVRDPFTNTAAFDWDGFRRVV 365 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T R+LDNV++IN +EK + R G+G +G S +L Y S ++ ++ Sbjct: 366 ATFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLKHKYGSAASIAFTEQ 425 Query: 686 SMEFISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAM 738 + ++ ++ LA+E+GA + + + D I + +++ ++ Sbjct: 426 VAQELAITGWKEALSLAKEKGAAPVMEQEFTITAKMIRQRPEMADDGIKVGDKIKGKVLH 485 Query: 739 NRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790 + SR EL + + T+G R ++ +IAPT TI+ S I+PS+ + Y Sbjct: 486 AKYSRYMQQVAEIEPELIEALSTVGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 545 Query: 791 VKS---NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 ++ VN + L R+L + + S ++P+ T Sbjct: 546 TRNVIVTGKKTKENVNVYSFELLAYRELVNSKAMPY------STDEETQLPE----YFIT 595 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 A +I P ++ + Q+WID + S + + + IY A+ GLK R Sbjct: 596 ADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQDIYMNAYDKGLKGCTTFR 653 >gi|330720411|gb|EGG98732.1| Ribonucleotide reductase of class II (coenzyme B12-dependent) [gamma proteobacterium IMCC2047] Length = 715 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 138/665 (20%), Positives = 267/665 (40%), Gaps = 58/665 (8%) Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKE--TEKE 336 L +D + L I +Y L NG ++ A F RVA LA E + + Sbjct: 5 LKAVSDEVKDIPLQDASLDIWDKKYRLKAKNGEAVDTDVDATFRRVARALADVETGKKNQ 64 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENA 391 ++ E + + + + N+G + + +C ++ V D + I E Sbjct: 65 EKWYEKFLWALRKGVIPAGRIISNAGAKEHKPATSTINCTVSAVIHDSMTDILTKNLEAG 124 Query: 392 MLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAY 451 + K G+G +++ +R GA++ G + G + F+ + + V+ G R+GA A Sbjct: 125 LTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMAT 184 Query: 452 LETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH 511 + H DV EF+ ++ + R N + I D F++ V A W L P ++ Sbjct: 185 FDVGHPDVFEFIRAKR----EDGRLRQFNLSLLITDEFIQAVKDQADWQLAFPVTAKEVE 240 Query: 512 DLYGKEFEIAYENY------ERQADRGEI----KVFRKISAVALWRKMLTMLFETGHPWI 561 + G + E + E E +V++ + A +W +++ ++ P Sbjct: 241 N-DGIDLEGDDIIWRESPNSEDYVHNDEGLVACRVYKTVKAQRVWDAIMSSTYDFAEPGF 299 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----F 616 D N + + ++N C E L C LGS+NL + F Sbjct: 300 ILIDKVNEMNNNWFCEQIRATNPCGEQPLPPY----GSCLLGSVNLTRFVVDPFTPNARF 355 Query: 617 DYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYAS 676 D+D+ + R+LDNV++IN +E+ + R G+G +G S +L + Y Sbjct: 356 DWDEYRKVVSIFTRMLDNVVEINGLPLEQQRHEIQNKRRHGMGYLGLGSTTTMLGLKYGD 415 Query: 677 PEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----SLWDQGVFP---IDSIGLL 729 ++E+ + + ++ ++ELA+E+GA + P D + Sbjct: 416 EASLELTERVTKEMAMVGWETALELAEEKGAAPIMDEMFEVTPCMLRKRPEMAKDGYKVG 475 Query: 730 AEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQS 781 +V ++ + SR EL +++ G R ++ +IAPT TI+ S Sbjct: 476 DQVAGKVLHAKYSRYMQQVAQENPELVEKLAEKGARFTHHTSIAPTGTISLSLANNASNG 535 Query: 782 IDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD- 840 I+PS+ + Y ++ + ++ D++ +++ + + P++ Sbjct: 536 IEPSFAHHYSRNVI--------REGRKTKEKVDVFSYELLAYRELVNPKAMPYSENPEEQ 587 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899 L + +A +I P ++ + QKWID + S + + + IY A+ GLK Sbjct: 588 LPEYFISADDIKPKQHVDVQAASQKWIDSSISKTANVPTDFPYQDFKDIYMYAYEQGLKG 647 Query: 900 TYYLR 904 R Sbjct: 648 CTTFR 652 >gi|261820461|ref|YP_003258567.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium wasabiae WPP163] gi|261604474|gb|ACX86960.1| ribonucleoside-diphosphate reductase, alpha subunit [Pectobacterium wasabiae WPP163] Length = 721 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 166/679 (24%), Positives = 278/679 (40%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +EEG + + + L + +LG Y Y L +G Sbjct: 68 EKLRYLVEEGYYEADVLDQYSFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 127 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA A + + S F +TPT N G + +L S Sbjct: 128 RYLERYEDRVCLVALALA---KGDTALASALVDEIISGRFQPATPTFLNCGKKQRGELVS 184 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 185 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 244 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 245 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 304 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + N LFSP D+ +YG + + ++ + I A ++ + Sbjct: 305 QLAKNNQVMYLFSP---YDVEQVYGMPLSEISVTEKYHEMVNDKRIRKSQIKAREFFQIL 361 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P++ F+D N +P G ++ SNLC+EI + Sbjct: 362 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKD 419 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ A+ T+ A+R L V D+ + ++ +K N AI Sbjct: 420 ISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAI 474 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715 GLG M L I Y + EAV+ + ++FHAI AS LA E +S F+ S Sbjct: 475 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 534 Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + I E ++ ++ ++ W L++ V G+ N N A+ Sbjct: 535 YATGEYFDKYIEQQWEPTTTRARELFEQAGIHIPTQQDWAALRESVIAHGIYNQNLQAVP 594 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 595 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND----------------- 637 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 638 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 683 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 684 NKAQIYAWTKGIKTIYYIR 702 >gi|281491478|ref|YP_003353458.1| ribonucleoside-diphosphate reductase subunit alpha [Lactococcus lactis subsp. lactis KF147] gi|281375196|gb|ADA64709.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactococcus lactis subsp. lactis KF147] Length = 722 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 169/715 (23%), Positives = 289/715 (40%), Gaps = 81/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E +T +K+ + +E Y + ++E E + L +L Sbjct: 32 KEAITAFFKENVEPNRYE-ADTYIDKLNWLVKEEYLEAEFLEKYKPEFITNLRKELSKFE 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y + N + + + F RV M EK A + + Sbjct: 91 FHFDSFMAAYKFYNQYAMKNNDGSLYL-EDFEDRVLMNALYMADGDEKLANNLAFAMINR 149 Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+ R + SCFL + DD+ I + L+K GG+G + T +R Sbjct: 150 RYQPATPTFLNAGRKRRGEFVSCFLLQLTDDMNSIGRTINSALQLSKNGGGVGLNLTNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G +G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 210 AAGAPIKGYDGVAAGVVPVMKLFEDAFSYANQLGQRQGAGVVYLSLFHPDIMEFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V + LF P V YGK F E Sbjct: 270 NADEKIRVKTLSLGVTVPDKFYELVKKGETMYLFEPYFV---EKYYGKPFAEVDITAEYD 326 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 ++ + I++ L +++ + E+G+P+I D N +P GV+ SNLC+E Sbjct: 327 KMVANPEIRKTPINSRELEQELSKLQQESGYPYIVNVDTVNQANPV--DGVISMSNLCSE 384 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGS N+L ++ + ++I VR L + Sbjct: 385 ILQVQTPSVLNDDQTYKVVGTDVACNLGSTNVLNMMTSSN----EFGTSIEAMVRALTFI 440 Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + + T+ +K N AIGLG MG S L I Y S EAVE ++++ Sbjct: 441 SETSNLDTVPTVRKGNDEMHAIGLGAMGLHSFLAQNQIHYDSKEAVEFTSVYFMLLNYYT 500 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LPW 746 + AS +LA E+ ++ +F+ S + G + + + + W Sbjct: 501 LVASNKLAVEKGSSFKNFEKSAYADGSYFDKYLTHDYFAAVSSKVQELFKGIAVPTIEDW 560 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 L+ VKT G+ NS MA+AP +I+ I S SI P + + G Sbjct: 561 TALRDTVKTSGLYNSYRMAVAPNGSISYINDCSSSIHPIVNRIEERQEKKVGKIYYP--- 617 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L E + + +A++ D +I+ + + Sbjct: 618 ------AAGLATETI----------------------PYYKSAYDTDMRAVIDVYAAATE 649 Query: 866 WIDQAQSLNLYL---------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ ++ + + L + A+ G+KT YY+R+ Sbjct: 650 HVDQGLSLTLFMRSTLPEGLYEWKVANNKMTTRDLSILRNYAYKKGIKTIYYIRT 704 >gi|228476825|ref|ZP_04061470.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus salivarius SK126] gi|228251399|gb|EEK10544.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus salivarius SK126] Length = 719 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 161/716 (22%), Positives = 281/716 (39%), Gaps = 86/716 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + K + + IE + L+ ++ ++ Sbjct: 32 KEALRAFFLENVKPNSMAFNSITDK-INYLIENDYIESEFIGKYEPAFIEKLSAEIHSQK 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV EK A + N + Sbjct: 91 FRFQSFMAAYKFYQQYALKTNDGESYLESIED---RVLFNALYFADGDEKLASDLANEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + Y+ Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGK-PYNYIDITAMYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I + I+A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANRHNPI--DGKIIMSNLCS 383 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + E CNLGS N+L + +IR L Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIRAMTCALTF 438 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N GLG MG S L HI Y SPE+VE + +++ Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744 + S +A+E + + F+ S + G + + + E+ D + + Sbjct: 499 TLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRIKELFDGHFIPQA--K 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP- 615 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + D + +A+++D +I+ + Sbjct: 616 ------------------------------ANGLSTDTIPFYTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|118594264|ref|ZP_01551611.1| hypothetical protein MB2181_01310 [Methylophilales bacterium HTCC2181] gi|118440042|gb|EAV46669.1| hypothetical protein MB2181_01310 [Methylophilales bacterium HTCC2181] Length = 720 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 136/656 (20%), Positives = 261/656 (39%), Gaps = 63/656 (9%) Query: 293 FEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSS 348 F+ + + I +Y L Q + RVA LA E +++ F L Sbjct: 21 FQSVSMDIWDKKYRLKSKQGTFVDNNIQDTYNRVAKALAEVEIPEKRDLWHERFVWALQR 80 Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGND 403 + N+G + +C ++ + D + I ++E + K G+G + Sbjct: 81 GAI-PAGRITSNAGALEHKPATSTINCTVSGIIEDSMTDILDKVKEAGLTLKAGCGIGYE 139 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + G + G + F+ + + V+ G R+GA A + H DV +F+ Sbjct: 140 YSTLRPKGAFVAGAGAYTSGPLSFMDIYDRMCFTVSSAGGRRGAQMATFDIAHPDVTDFI 199 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDL 513 ++ + R N + I FM+ V + W L P ++ + + Sbjct: 200 KAKR----EDGRLRQFNLSCLITKEFMEAVKADGEWKLAFPITEKEAKEDQIDLKNNEQV 255 Query: 514 YGKEF--EIAYENYERQADRGEI--KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +E+ Y + + G++ KV++ + A LW +++ ++ P D N Sbjct: 256 VWREWPVNGKYLTELKGKNAGKVACKVYKTLKAKRLWDIIMSSTYDYAEPGFILIDRVNE 315 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLAST 624 + + ++N C E L C LGSINL N D +D+ Sbjct: 316 MNNNWFCENIRATNPCGEQPLPPY----GACLLGSINLTKFVKNPFTDKAYFNWDEYKEV 371 Query: 625 IRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 + R+LDNV++IN +EK + R G+G +G S+L ++ + Y ++++ + Sbjct: 372 VGIFTRMLDNVVEINGLPLEKQRDEIARKRRHGMGYLGLGSSLAMMQMVYGDEKSIKFTE 431 Query: 685 ESMEFISFHAISASVELAQERGAYSSFKG-------SLWDQGVFPIDSIGLLAEVRDELA 737 + ++ V+LA+E+GA + L + D I + ++ ++ Sbjct: 432 DVSRILAEEGWKTGVDLAKEKGAAPIMEELFEVTPAMLAMRPEMETDGIKIGDKLPGKVL 491 Query: 738 MNRTSRLPWD---ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVK 792 M R SR L+ ++ G+R S+ +IAPT TI+ S I+PS+ + Y + Sbjct: 492 MGRYSRYMQQFPKSLQDQIADQGVRFSHHSSIAPTGTISLSLANNASNGIEPSFAHHYSR 551 Query: 793 SNM---SGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 + + V+ F L R L ++ + + + + L + Sbjct: 552 NVIREGKKSKEKVDVFSFELLAYRHLINQKAMPFSEKEN----------EKLPDYFIDSS 601 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 I ++ + QKWID + S + + + + IY A+ GLK R Sbjct: 602 TIQAKAHVDIQAAAQKWIDSSISKTINVPTDYDYEDFKSIYLYAYDKGLKGCTTFR 657 >gi|260904663|ref|ZP_05912985.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacterium linens BL2] Length = 718 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 166/678 (24%), Positives = 271/678 (39%), Gaps = 68/678 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E ++ + L L + +LG + Y L Sbjct: 64 AERLEWLVDHDYYESGFLAAYTPEFLTALHEHARAAGHRFATFLGAFKFFTSYALKTFDG 123 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 + VA L L E+ A + + S F +TPT N+G +L SC Sbjct: 124 TTYLEGFEERVVATALYLG-QGDEQLATGLVDEMLSGRFQPATPTFLNAGKAQRGELVSC 182 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL V D+L I ++ L+K GG+ + +R GA I ++ GV+P +K+ Sbjct: 183 FLLRVEDNLESIGRSVNSALQLSKRGGGVALLLSNLREAGAPIKQIENQASGVVPVMKIL 242 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 243 EDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFQ 302 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKML 550 N LFSP +V YG + ++ + +SA +R + Sbjct: 303 LAKDNRDMHLFSPYDVQRE---YGTPLSDLSVSDHYDELVANPQIRKNTVSAREFFRTLA 359 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598 + FE+G+P++ F+D N +P G ++ SNLC+EI + Sbjct: 360 ELQFESGYPYVLFEDTVNRANPL--AGHINMSNLCSEILQTNTPSTYDNAIGYQEIGQDI 417 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + L ST+ TAVR L +V D N + K N AIG Sbjct: 418 SCNLGSLNIAQAMNS-----SDLGSTVETAVRALTSVSDQTNVDAVPSVAKGNDASHAIG 472 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLW 716 LG M L I Y S E ++ D I++HAI AS ++A ER ++ F+ S + Sbjct: 473 LGQMNLHGYLASQRIHYGSEEGIDFTDIYFLTITYHAIRASNQIAIERGKTFAGFEDSTY 532 Query: 717 DQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAIAP 768 G + D VR+ A + + W+ L++ VK G+ N+ A+ P Sbjct: 533 ADGSYFDKYTQHDWQPATQRVRELFADAGVTIPAGEDWERLRESVKAQGIYNAYLQAVPP 592 Query: 769 TATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 T +I+ + + SI P + ++ G + Sbjct: 593 TGSISYVNNSTASIHPVAAKIEIRKEGKLGRVYYPAPHM--------------------- 631 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLD 886 DD + A+EI +I++ + + +DQ SL L+ + + + ++ Sbjct: 632 ----------TDDNVDFYQDAYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDTATTRDIN 681 Query: 887 FIYRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 682 RAQIYAWRKGIKTLYYIR 699 >gi|260583951|ref|ZP_05851699.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella elegans ATCC 700633] gi|260158577|gb|EEW93645.1| ribonucleoside-diphosphate reductase, alpha subunit [Granulicatella elegans ATCC 700633] Length = 725 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 162/687 (23%), Positives = 276/687 (40%), Gaps = 71/687 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E +E + L ++ ++ ++ Y +Y L N Sbjct: 58 DEKLDYLLEHDYLEEEFLNKYDREFVKSLMQEIYKKKFRFRSFMSAFKFYKQYALKTNDG 117 Query: 313 RIEMPQAFFM-RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370 E F R+ E+ A + + + +TPT N+ R +L S Sbjct: 118 --ERYLERFEDRIVFNALFLADGDEQLARDLAEEMIHQRYQPATPTFLNAGRKRRGELVS 175 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL DD+ I + L++ GG+G + VR G I S GV+P +K+ Sbjct: 176 CFLIQTTDDMNSIGRTINSALQLSRIGGGVGVSLSNVRAAGDPIKKIENASSGVVPIMKL 235 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G+R GA YL +H D+ FL +K D++ R ++ +PD F Sbjct: 236 LEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDKFY 295 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + + + LFSP +V ++ + + + YE + EI+ + + A L +++ Sbjct: 296 ELIKNDDMMYLFSPYDVERIYGV-PFSYVDITKEYENMVNNSEIRKSK-LRARDLEQEIS 353 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS------EETAVCNLG- 603 + E+G+P+I D N +P G + SNLC+EI S +E V Sbjct: 354 KLQQESGYPYIVNIDTVNKANPI--DGKIIMSNLCSEILQVQSPSVINNAQEYEVLGTDI 411 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + N +I AVR L V D + + K N IGLG MG Sbjct: 412 SCNLGSTNIVNLMQSPDFERSIEVAVRALTFVTDHSSIDAVPTVKNGNQKAHTIGLGAMG 471 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVF 721 + L + Y SPE++E+ D ++F+ + AS ++A+ERG + F+ S + G + Sbjct: 472 LHTFFALNQMEYGSPESIEVTDLYFRLLNFYTLKASHKIAKERGVTFDGFEKSAYASGTY 531 Query: 722 PIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 E++ E + + W +LK V G+ + N +AIAPT +I+ + Sbjct: 532 FDAYTESDVEIKSEKVKEIFENLPIPTAEDWKQLKADVMADGLYHQNRLAIAPTGSISYV 591 Query: 776 CGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 S S+ P + + + +G FL N Sbjct: 592 NETSASLHPITRLIEERQEKKTGKTYYPAPFLSN-------------------------- 625 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-------------- 880 + + +A++ID +I+ + QK IDQ SL L++ Sbjct: 626 -----ETLPYYKSAYDIDMRKVIDVYAAAQKHIDQGMSLTLFMRSELPEGLYEWKNGRTR 680 Query: 881 --SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + L+ + AW G+K+ YY+R+ Sbjct: 681 KMTTRDLNILRNYAWNKGIKSIYYVRT 707 >gi|227513707|ref|ZP_03943756.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus buchneri ATCC 11577] gi|227522502|ref|ZP_03952551.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus hilgardii ATCC 8290] gi|227083026|gb|EEI18338.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus buchneri ATCC 11577] gi|227090324|gb|EEI25636.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus hilgardii ATCC 8290] Length = 721 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 153/686 (22%), Positives = 276/686 (40%), Gaps = 75/686 (10%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--INGS 312 F IE + + L LK ++DF F ++ Y +Y L N Sbjct: 57 FDYLIENHYYEAGFIKKYPISFIEKLYQYLK-DQDFHFKSFMAAYKFYAQYALKTNDNDK 115 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 +E F RVA E+ A+ + + + +TP+ N+G ++ + SC Sbjct: 116 YLES---FLDRVAANALFFADGDEQLAMNLADEIIHQRYQPATPSFLNAGRQNRGEFVSC 172 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL DD+ I + L++ GG+G + + +R G I G + GV+P +K+ Sbjct: 173 FLIQSTDDMNTIGRTINSALQLSRIGGGVGINLSNLRAAGDPIKHIEGAASGVVPVMKLL 232 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G+R+GA YL +H D+ FL +K D++ R ++ +PD + + Sbjct: 233 EDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGAKKENADEKIRLKTLSLGVTVPDKYYE 292 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 V +A LFSP +V + + +I E +IK + + A L ++ Sbjct: 293 LVKADADMYLFSPYDVEREYGVPFSYVDITKEYDH-LVANDKIKKTK-VKARDLETEISK 350 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EETAVCNLG---S 604 + E+G+P+I D N G + SNLC+EI + E LG S Sbjct: 351 LQQESGYPYIINIDTANR--ENPIDGRIVMSNLCSEILQVQTPSTVDNEQHYIKLGKDIS 408 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + N + ++ + VR L V D N + + N +IGLG MG Sbjct: 409 CNLGSTNIANMMNATNFGHSVESMVRALTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGL 468 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP 722 S H+ Y SPE++E +++ ++ AS ++A+E + +F+ S + G + Sbjct: 469 HSYFAKSHMHYGSPESIEFTSVYFMLLNYWSLVASNKIAKERHQTFDNFEKSKYADGTYF 528 Query: 723 IDSIGLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + + + + + W LKK V G+ + N +A+AP +I+ I Sbjct: 529 DKYLNHSYAPQSDKVKQLFHGITIPTNEDWVALKKAVMEDGLYHQNRLAVAPNGSISYIN 588 Query: 777 GVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + S+ P + + + G +L N+ Sbjct: 589 DTTASLHPIINRIEERQESKIGKIYYPAPYLSND-------------------------- 622 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--------------- 880 + +A+++D +I+ + Q +DQ +L L++ Sbjct: 623 -----TMPYYTSAYDMDMRKVIDIYAAAQVHVDQGMALTLFMRSTIPEGLYEWKNGRTDK 677 Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + L+ + A G+K+ YY+R+ Sbjct: 678 MTTRDLNILRNYAHRKGIKSIYYIRT 703 >gi|121997262|ref|YP_001002049.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorhodospira halophila SL1] gi|121588667|gb|ABM61247.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Halorhodospira halophila SL1] Length = 721 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 135/662 (20%), Positives = 257/662 (38%), Gaps = 68/662 (10%) Query: 290 DFAFEYLGLQILYDRYF--LHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNL 345 D + L I +Y + + RVA LA E K++ E + Sbjct: 18 DVPIQSASLDIWDKKYRLKTKTEEAVDSSIDETYQRVARALAEVEETEAKQEHWFERFLW 77 Query: 346 LSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGL 400 + + + N+G + +C ++ T+ D + GI + E + K G+ Sbjct: 78 ALRHGAVPAGRIISNAGAWDHKPATSTINCTVSGTIHDSMDGILKRVHEAGLTLKSGAGI 137 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G +++ +R GA++ G + G + F+ + + V+ G R+GA A + H DV Sbjct: 138 GYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDVT 197 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP----------DEVSDL 510 +F+ ++ + R N + I D FM+ + + W L P ++ D Sbjct: 198 DFIRAKR----EDGRLRQFNLSLLITDAFMQAMEADEEWPLAFPLTDDEVAAEGIDLQDP 253 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + +E+ R +++R++ A LW ++T ++ P D N Sbjct: 254 EQVLWREWPTREGYVTDGEGRVACRIYRRVKARHLWNLIMTSTYDYAEPGFILIDQYNEL 313 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625 + + ++N C E L C LGSINL + FD+++ + Sbjct: 314 NNNWFCEEIRATNPCGEQGLPPY----GACLLGSINLTMFVRDPFTPQARFDWEEFREAV 369 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R+LDN ++IN +E+ + R G+G +G S + +L + Y +V +E Sbjct: 370 AVFTRMLDNTVEINGLPLEQQRAEIQRKRRHGMGFLGLGSTVTMLRMKYGDAASVAFTEE 429 Query: 686 SMEFISFHAISASVELAQERGAYSSFKG----SLWDQGVFPI---DSIGLLAEVRDELAM 738 + ++ +ELA+E+G + + P D + ++ + Sbjct: 430 VAKQMALTGWRTGLELAKEKGPAPIMEEIYEITPELMRKRPELREDGYEVGEQIPGRVLW 489 Query: 739 NRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790 R SR EL + IG R ++ +IAPT TI+ S I+PS+ + Y Sbjct: 490 GRYSRYMQRIADEEPELVDELAQIGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 549 Query: 791 VKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-------DLKK 843 V++ + E ++ + +L + I + +P+ L Sbjct: 550 VRNV------------IREGRKTKEPVDVFSFELLAYRHFIDG-DALPEGGEEGQGKLPD 596 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYY 902 +A ++ P ++ + QKW+D + S + + + IYR A+ GLK Sbjct: 597 YFISADQVTPKQHVDIQAAAQKWVDSSISKTANVPTDYPYEDFKDIYRYAYQQGLKGCTT 656 Query: 903 LR 904 R Sbjct: 657 FR 658 >gi|322516574|ref|ZP_08069488.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus vestibularis ATCC 49124] gi|322124844|gb|EFX96268.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus vestibularis ATCC 49124] Length = 719 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 162/716 (22%), Positives = 283/716 (39%), Gaps = 86/716 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + K + + IE + L+ D+ ++ Sbjct: 32 KEALRAFFLENVKPNSMAFNNITDK-INYLIENDYIESEFIGKYEPAFIEKLSADIHTQK 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV E A + N + Sbjct: 91 FHFQSFMAAYKFYQQYALKTNDGESYLESIED---RVLFNALYFADGDENLASDLANEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + Y+ Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGK-PYNYIDITAMYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I + I+A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANRHNPI--DGKIVMSNLCS 383 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + E CNLGS N+L + +I+ R L Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N GLG MG S L HI Y SPE+VE + +++ Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744 + S +A+E + + F+ S + G + + + E+ + + + Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRIKELFEGHFIPQA--K 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYPA 616 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L S I + +A+++D +I+ + Sbjct: 617 NSL-----------------------STDTIPF--------YTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|220917435|ref|YP_002492739.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter dehalogenans 2CP-1] gi|219955289|gb|ACL65673.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter dehalogenans 2CP-1] Length = 928 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 127/651 (19%), Positives = 237/651 (36%), Gaps = 71/651 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G E + E +L+ ++P FN HPQ S+CF+ V D + I Sbjct: 116 GYFASEGDAVAFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444 ML KY G G++ + +R + G G++ G + F++ + A + GGK R Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 234 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNTAN 483 + A L+ H DV EF++ + + D + N + Sbjct: 235 RAAKMVILDVDHPDVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 + D FM+ V ++ W + R + + I A Sbjct: 295 RVTDAFMRAVLEDREW---------------------------KLTARTDGQALETIRAR 327 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 L R++ + G P + F N P + +++SN C+E + + CNL Sbjct: 328 DLMRQITEAAWLCGDPGMQFDTTINAWHPCPNTDRINASNPCSEYMF----LDDSACNLA 383 Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S+NL+ + FD + + + + ++ + K++ +R +GLG Sbjct: 384 SLNLMHFRSIEGGFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYAN 443 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG--- 719 + L +PY S A ++ A + S +A+ G ++ ++ + Sbjct: 444 LGALLMASGLPYDSDAGRACAAAITSLMTGEAYAMSARIAERMGPFAGYEKNRDPFLAVI 503 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778 + L+ E + +R W + ++ G RN +APT TI + Sbjct: 504 RKHAQHVDLVDPTLVEAGLLAAARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCD 563 Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIE 835 + I+P + Y K G +VN+ + L++ E + S L++ D +I Sbjct: 564 TTGIEPDIALVKYKKLVGGGMLKIVNNTVPLALQRLGYSSEEITSVLQFIDEVETIEGAP 623 Query: 836 RIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 + + + AF I M I Q ++ A S + + + + ++ Sbjct: 624 GLRPEHAAVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 Y ++W +GLK R S +T K + K +AV Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEEKKDAVEPRLARRRLPDE 734 >gi|227529512|ref|ZP_03959561.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus vaginalis ATCC 49540] gi|227350597|gb|EEJ40888.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus vaginalis ATCC 49540] Length = 723 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 155/707 (21%), Positives = 277/707 (39%), Gaps = 70/707 (9%) Query: 232 VLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF 291 L + K + + Y + + D + L + LK + Sbjct: 36 ALKDFIENNVKPNTKQFASVTARY-KWLEDNDYIEDGFMDKYSDAFIEKLYDYLKQQNFH 94 Query: 292 AFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHF 351 ++ Y +Y L N + RVAM E+ A+ + + + Sbjct: 95 FHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGDEELAMILADEIIHQRY 153 Query: 352 MCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGL 410 +TPT N R + SCF D++ I + L+K GG+G + + +R Sbjct: 154 QPATPTFLNVGRKRRGEFVSCFAIQPTDNMNTIGRTINSALQLSKIGGGVGINLSNLREA 213 Query: 411 GAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG 470 GA I + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K Sbjct: 214 GAPIKKIENAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENA 273 Query: 471 DDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQAD 530 D++ R ++ +PD F + V ++ LFSP +V ++ + E Y+ Sbjct: 274 DEKIRLKTLSLGVTVPDKFYELVEKDEDMYLFSPYDVERVYGK-PFSYVDITEEYDNMVA 332 Query: 531 RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL 590 EI +K++A L ++ + E+G+P+I D N G + SNLC+EI Sbjct: 333 NDEI-HKKKVNARDLEDEISKLQQESGYPYIINIDTVNR--DNPIDGKIVMSNLCSEIAQ 389 Query: 591 NS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHT 642 + S NL + N + +IR VR L + D+ Sbjct: 390 VQTPSIVADDQSYETLGTDISCNLGSTNIANMMNTPDFGRSIRAIVRGLTRISDVESLDV 449 Query: 643 IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELA 702 + KK N +IGLG MG L HI Y SP AVE +++ ++ AS E+A Sbjct: 450 VPSIKKGNELSHSIGLGAMGLHGYLAKNHIQYGSPVAVEFTSVYFMLLNYWSLVASNEIA 509 Query: 703 QE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRVKT 755 +E + +F+ S + G + + + +L + W +LK V Sbjct: 510 KERHETFHNFEKSKYADGSYFDKYVSKDWGPKSDLVKKLFANIHIPTIDDWKKLKDDVMA 569 Query: 756 IGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRD 814 G+ N +A+AP + + I + S+ P + + M G +L N+ Sbjct: 570 DGLYNEYRLAVAPNGSTSYINDSTASLTPIINRIEERQEKMIGKIYYPAPYLSND----- 624 Query: 815 LWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 + +A+++D +I++ + Q+ +DQ+ SL Sbjct: 625 --------------------------TMPYYRSAYDMDMRTVIDTYAAAQQHVDQSLSLT 658 Query: 875 LYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 L++ ++ + + L+ + A+ G+K+ YY+R+ Sbjct: 659 LFVRSTMPEGLYEWKNGRTNKMTTRDLNILRHYAYKKGIKSIYYVRT 705 >gi|157955347|gb|ABW06054.1| NrdE [Bacillus thuringiensis serovar alesti] Length = 694 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 161/712 (22%), Positives = 299/712 (41%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+ GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSNIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + + GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAACGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIADESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|50122259|ref|YP_051426.1| ribonucleotide-diphosphate reductase subunit alpha [Pectobacterium atrosepticum SCRI1043] gi|49612785|emb|CAG76235.1| ribonucleoside-diphosphate reductase 2 alpha chain [Pectobacterium atrosepticum SCRI1043] Length = 715 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 166/679 (24%), Positives = 278/679 (40%), Gaps = 72/679 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGS 312 E +EEG + + + L + +LG Y Y L +G Sbjct: 62 EKLRYLVEEGYYEAEVLDQYHFDFIKSLFQQAYAHKFRFQTFLGAFKYYTGYTLKTFDGK 121 Query: 313 RI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 R E + VA+ LA A + + S F +TPT N G + +L S Sbjct: 122 RYLERYEDRVCLVALALA---KGDTTLASALVDEIISGRFQPATPTFLNCGKKQRGELVS 178 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 179 CFLLRIEDNMESIGRAINSALQLSKRGGGVAFMLSNIRETGAPIKRIENQSSGIIPIMKM 238 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 239 LEDAFSYANQLGARQGAGAVYLNAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITF 298 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + N LFSP D+ +YG + + ++ + I A ++ + Sbjct: 299 QLAKNNQVMYLFSP---YDVEQVYGVPLSEISVTEKYHEMVNDKRIRKSQIKARDFFQIL 355 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P++ F+D N +P G ++ SNLC+EI + Sbjct: 356 AEIQFESGYPYMMFEDTVNRANPIH--GRINMSNLCSEILQVNDASLYDDDLGYRHIGKD 413 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ A+ T+ A+R L V D+ + ++ +K N AI Sbjct: 414 ISCNLGSMNIANAMASP-----DFGQTVEMAIRALTAVSDMSHISSVPSIEKGNDESHAI 468 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSL 715 GLG M L I Y + EAV+ + ++FHAI AS LA E +S F+ S Sbjct: 469 GLGQMNLHGYLAKERIFYGTEEAVDFTNIYFYTVAFHAIRASNALAIERNQRFSGFELSK 528 Query: 716 WDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + I E ++ ++ ++ W L++ V G+ N N A+ Sbjct: 529 YATGEYFDKYIEQQWEPITARARELFEQAGIHIPNQQDWAALRESVIAHGIYNQNLQAVP 588 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 589 PTGSISYINHSTSSIHPIVSRIEIRKEGKIGRVYYPAPYMNND----------------- 631 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 + + A+EI P +I++ + + +DQ SL L+ + + + + Sbjct: 632 --------------NLEYYQDAYEIGPQKIIDTYAAATQHVDQGLSLTLFFRDTATTRDI 677 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 678 NKAQIYAWTKGIKTIYYIR 696 >gi|308173698|ref|YP_003920403.1| ribonucleoside-diphosphate reductase major subunit [Bacillus amyloliquefaciens DSM 7] gi|307606562|emb|CBI42933.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553368|gb|AEB23860.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus amyloliquefaciens TA208] gi|328911842|gb|AEB63438.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus amyloliquefaciens LL3] Length = 700 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 153/696 (21%), Positives = 288/696 (41%), Gaps = 56/696 (8%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E IE ++ + ++ Sbjct: 30 KEAVHSYFVDYINQNTVFFHDL-KEKLDYLIENQYYEEEFLSLYSFEEIKDVFKTAYAKK 88 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y+ Y L N +E + R+++ ++A ++ L+ Sbjct: 89 FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDAEKAKDYVRLMI 145 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + STPT N+ R +L SCFL V D L I A+ + L+K GG+ + + Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +FLD + Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K + D+ R ++ IPD F++ ++ +F P + + + E + YE Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFVELAREDKAAYVFYPHTIYKEYGQHMDEMD-MTAMYE 324 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 D +K + ++A L K+ + E+G+P+I F+D N HV V SNLC+ Sbjct: 325 ELVDNPRVKKEK-VNARKLLEKLAVLRSESGYPYIMFQDNVNKEHANNHVSKVKFSNLCS 383 Query: 587 EITL------NSSSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 E+ + +E L S NL + N + + T++ A L +V + Sbjct: 384 EVLQASQVSAYTDYDEEDEIGLDISCNLGSLNILNVMKHKSIERTVKLATDSLTHVSETT 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + +++N ++IGLG M L I Y SPEA + A+ ++F++I S Sbjct: 444 DIRNAPAVRRANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFFMMVNFYSIQRS 503 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKK 751 ELA+E+ + ++GS + G + I E M+ + W ELK Sbjct: 504 AELAKEKGETFEHYEGSTYATGEYFNKYIEKEFSPAYEKIAALFEGMHIPTIEDWKELKA 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELK 811 V GM +S + IAPT +I+ + + S+ P + + ++ + Sbjct: 564 FVAENGMYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP--------- 614 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + + + + A+++D +++ + Q+ IDQ Sbjct: 615 ----------------------MPGLASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQGI 652 Query: 872 SLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 S L+L + + + L+ I A G+KT YY R++ Sbjct: 653 SFTLFLKDTMTTRDLNRIDLYAHHRGIKTIYYARTK 688 >gi|256391015|ref|YP_003112579.1| vitamin B12-dependent ribonucleotide reductase [Catenulispora acidiphila DSM 44928] gi|256357241|gb|ACU70738.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Catenulispora acidiphila DSM 44928] Length = 994 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 125/601 (20%), Positives = 225/601 (37%), Gaps = 32/601 (5%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E E + L F ++P FN GT+ Q+S+CF+ +V D + I Sbjct: 139 GYFATPQDAEIFEHELAHALLHQMFAFNSPVWFNVGTKSPQQVSACFILSVDDSMDSILN 198 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 199 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATR 257 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+EEF+ + D R D T Sbjct: 258 RAAKMVVLDVDHPDIEEFVQTKAREEDKIRALR---------DAGFDMDLGGKDITSVQY 308 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWIT 562 ++ + EF A +N ER R +V + A L+R + +E P + Sbjct: 309 QNANNSVRVT-DEFMHAVQNTERFGLRARQTGEVIETLDAKQLFRDIAKAAWECADPGLQ 367 Query: 563 FKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKL 621 + D N G + +SN C+E S + + CNL S+NL+ ++ FD + Sbjct: 368 YDDTINAWHTNPETGRITASNPCSEYL----SLDNSSCNLASLNLMKFLREDDTFDTETF 423 Query: 622 ASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 + + +D I + ++ R +G+G + L Y S Sbjct: 424 VKMVELVITAMDISISFADFPTPEIGQTTRDFRQLGIGYANLGALLMATGHAYDSEGGRA 483 Query: 682 IADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELA 737 IA ++ A S ELA G Y+ F + + + Sbjct: 484 IAAAITSLMTGVAYRRSAELAGVVGPYNGFARNAKPHAAVMRKHADAADAYVPFEDFDKQ 543 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNM 795 + SR W + G RN+ +APT TI + V + ++P + + K Sbjct: 544 ILELSRTEWQRGNEIGAANGWRNAQASLLAPTGTIGFMMDVDTTGVEPDLALVKFKKLVG 603 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF---E 850 G +VN+ + LK+ E + + ++Y G + + + + + A Sbjct: 604 GGSMQIVNNTVPRALKRLGYQQEQIEAIVEYIGEQGHVVDAPGLKPEHYSVFDCAMGERS 663 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 I PM + + Q ++ A S + + E S + ++ IY + W +GLK R+ Sbjct: 664 IAPMGHVRMMAAIQPFLSGAISKTVNMPEEASIEDVEEIYFEGWKLGLKALAIYRNNCKV 723 Query: 910 S 910 Sbjct: 724 G 724 >gi|227510691|ref|ZP_03940740.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189812|gb|EEI69879.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 721 Score = 298 bits (762), Expect = 4e-78, Method: Composition-based stats. Identities = 153/686 (22%), Positives = 276/686 (40%), Gaps = 75/686 (10%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLH--INGS 312 F IE + + L LK ++DF F ++ Y +Y L N Sbjct: 57 FDYLIENHYYEAGFIKKYPISFIEKLYQYLK-DQDFHFKSFMAAYKFYAQYALKTNDNDK 115 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 +E F RVA E+ A+ + + + +TP+ N+G ++ + SC Sbjct: 116 YLES---FLDRVAANALFFADGDEQLAMNLADEIIHQRYQPATPSFLNAGRQNRGEFVSC 172 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL DD+ I + L++ GG+G + + +R G I G + GV+P +K+ Sbjct: 173 FLIQSTDDMNTIGRTINSALQLSRIGGGVGINLSNLRAAGDPIKHIEGAASGVVPVMKLL 232 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G+R+GA YL +H D+ FL +K D++ R ++ +PD + + Sbjct: 233 EDSFSYSNQLGQRQGAGVVYLSVFHPDIISFLGAKKENADEKIRLKTLSLGVTVPDKYYE 292 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 V +A LFSP +V + + +I E +IK + + A L ++ Sbjct: 293 LVKADADMYLFSPYDVEREYGVPFSYVDITKEYDH-LVANDKIKKTK-VKARDLETEISK 350 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS----EETAVCNLG---S 604 + E+G+P+I D N G + SNLC+EI + E LG S Sbjct: 351 LQQESGYPYIINIDTANR--ENPIDGRIVMSNLCSEILQVQTPSTVDNEQHYIKLGKDIS 408 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + N + ++ + VR L V D N + + N +IGLG MG Sbjct: 409 CNLGSTNIANMMNATNFGHSVESMVRALTFVTDHSNIDVVPSIQNGNRESHSIGLGAMGL 468 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFP 722 S H+ Y SPE++E +++ ++ AS ++A+E + +F+ S + G + Sbjct: 469 HSYFAKSHMHYGSPESIEFTSVYFMLLNYWSLVASNKIAKERHQTFDNFEKSKYADGTYF 528 Query: 723 IDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + + + + + W LKK V G+ + N +A+AP +I+ I Sbjct: 529 DKYLNHSYAPQSDKVKQLFQGITIPTNEDWVALKKAVMEDGLYHQNRLAVAPNGSISYIN 588 Query: 777 GVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + S+ P + + + G +L N+ Sbjct: 589 DTTASLHPIINRIEERQESKIGKIYYPAPYLSND-------------------------- 622 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--------------- 880 + +A+++D +I+ + Q +DQ +L L++ Sbjct: 623 -----TMPYYTSAYDMDMRKVIDIYAAAQVHVDQGMALTLFMRSTIPEGLYEWKNGRTDK 677 Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + L+ + A G+K+ YY+R+ Sbjct: 678 MTTRDLNILRNYAHRKGIKSIYYIRT 703 >gi|157955355|gb|ABW06060.1| NrdE [Bacillus thuringiensis serovar dakota] Length = 694 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 162/712 (22%), Positives = 301/712 (42%), Gaps = 64/712 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ + ++A + + Y++E + + ++ + N Sbjct: 17 FYQLHKD-KEALEVFMEEARENTVPFNSVAERMEYMKEHDYYYNVLDEYSLEEVEGVYNI 75 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 E Y+ Y Y L N +E + RVA+ +A +F Sbjct: 76 AYGENFEFQSYMAASKFYKDYALKTNDQKQYLESYED---RVAIVSLYLGRGDVSKAKQF 132 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 +++ ++ +TPT N+ +R ++ SCFL + D L I + L+K GG+ Sbjct: 133 ASMIVKQNYQPATPTFLNAGRSRRGEMVSCFLLEMDDSLNSIGFNINTAMQLSKIGGGVA 192 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G + ++GV+P +K+ D+ NQ G+RKGA YL +H D+ E Sbjct: 193 LNLSKLRARGEQIKGIDNAARGVVPVMKLLEDSFSYANQLGQRKGAGAVYLNIFHWDIIE 252 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D++ R ++ +P F + +N + +F+P V + + + +I Sbjct: 253 FLDTKKINADEKSRIQSLSIGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLDDIDID 312 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ K ISA + K+ + E+G+P++ FK N + P + +G V Sbjct: 313 EMYDELMSNPKVKKKPLDISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKM 372 Query: 582 SNLCTEITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + E CNLGS+N++ N ++ + + Sbjct: 373 SNLCTEIFQLQETSEINDYGTDDIIRRDINCNLGSLNIVNVMEN-----KEIREAVHAGM 427 Query: 630 RVLDNVIDINCHTI-EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 L V D+ KK+N ++GLG M L I S EA E A Sbjct: 428 EALTAVSDMTIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIADESAEAKEFARTFFM 487 Query: 689 FISFHAISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRT 741 +++++I S+E+A E+ + F S + G + D + +V+ ++ Sbjct: 488 MLNYYSIEKSMEIATEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQLFEGIHIP 547 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 ++ W LK++V+ G+ NS +AIAPT +I+ + + S+ P + ++ + Sbjct: 548 TKEDWTSLKEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESRTYANATTYY 607 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L + W + ++++++ LI+ + Sbjct: 608 PMPYLSKD----TFW---------------------------YYKSSYDMNQFKLIDLIA 636 Query: 862 RRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ IDQ S LY++ + S ++L Y A GLK+ YY R+R + E Sbjct: 637 EIQEHIDQGISTILYVNSDISTRELARYYIYAHKKGLKSLYYTRTRKLSVEE 688 >gi|259502688|ref|ZP_05745590.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] gi|259169333|gb|EEW53828.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] Length = 723 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 155/708 (21%), Positives = 282/708 (39%), Gaps = 70/708 (9%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L + + + L F + + E L L + L + Sbjct: 35 EALADFIAQNVRPNTKQFASLTDR-FQWLEDHDYIEKGFVEQYSPAFLAKLYDYLTAQNF 93 Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 ++ Y +Y L + + RVAM E+ A++ + + Sbjct: 94 HFHSFMAAYKFYAQYALRTDDKEYYLENYV-DRVAMNALYLADGDEELAMDLADEIIHQR 152 Query: 351 FMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + +TPT N R + SCF DD+ I + L+K GG+G + + +R Sbjct: 153 YQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLSKIGGGVGINLSNLRE 212 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K Sbjct: 213 AGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKEN 272 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D++ R ++ +PD F + V A LFSP +V ++ + + Y+ Sbjct: 273 ADEKIRLKTLSLGITVPDKFYELVEAGADMYLFSPYDVERIYGK-PFSYVDITKEYDNLV 331 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 EI+ +K++A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 332 ANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRANPI--DGKIVMSNLCSEIA 388 Query: 590 LNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-H 641 + S NL + N D ++R +R L ++ D+ Sbjct: 389 QVQVPSKVADDQSYETLGTDISCNLGSTNIANMMDSPDFGRSVRAMMRGLTHISDVENLT 448 Query: 642 TIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVEL 701 + K+ N ++GLG MG S L HI Y SP A+E +++ ++ AS E+ Sbjct: 449 VVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIEFTGVYFMLLNYWSLVASNEI 508 Query: 702 AQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDELKKRVK 754 A+E + + +F S + G + + ++ W LK++V Sbjct: 509 AKERQETFHNFAKSAYADGSYFDKYTTKDWGPQSDVVKALFQGIFIPGPADWQALKEKVM 568 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQR 813 G+ N +A+AP + + I + S+ P + + M G +L N+ Sbjct: 569 QDGLYNEYRLAVAPNGSTSYINDSTASLTPITNRVEERQEKMIGKIYYPAPYLSND---- 624 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + +A++ID +I++ + Q+ +DQ+ SL Sbjct: 625 ---------------------------TMPYYQSAYDIDMRKVIDTYAAAQQHVDQSMSL 657 Query: 874 NLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 L++ ++ + + L+ + A+ G+K+ YY+R+ Sbjct: 658 TLFMRSTIPAGLYEWKDGRTNKMTTRDLNILRHYAYQKGIKSIYYIRT 705 >gi|282599613|ref|ZP_06257324.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] gi|282568716|gb|EFB74251.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rustigianii DSM 4541] Length = 710 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 168/674 (24%), Positives = 279/674 (41%), Gaps = 60/674 (8%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + E + E + L + +LG Y Y L +G Sbjct: 56 KEKLDFLVNENYYESEVLEQYEFQFIKQLFKQAYAHKFRFKTFLGAFKYYTSYTLKTFDG 115 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA A + + S F +TPT N G + +L Sbjct: 116 QRYLERYEDRVCMVALTLAQGSKS---LASLLVDEIISGRFQPATPTFLNCGKKQRGELI 172 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I ++ L+K GG+ T +R GA I +S GV+P +K Sbjct: 173 SCFLLRIEDNMESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKHIENQSSGVVPVMK 232 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 233 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 292 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 + N LFSP +V + + E E Y + IK F+ I+A ++ + Sbjct: 293 FQLAKNNEDMYLFSPYDVQREYGVAMSEIS-VSEKYHEMVNNKAIKKFK-INAREFFQTI 350 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE--ITLNSSSEETAVCNLG---- 603 + FE+G+P+I F+D N G ++ SNLC+E S+ E + Sbjct: 351 AEIQFESGYPYILFEDTANR--ENPIAGRINMSNLCSEILQVNQPSTYEDDLNYKTVGKD 408 Query: 604 -SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLM 661 S NL + + D A +I TAVR L V D++ +++ + N AIGLG M Sbjct: 409 ISCNLGSMNIASTMDSPDFALSIETAVRALTAVSDMSYINSVPSIAQGNQQSHAIGLGQM 468 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGV 720 L HI Y S + ++ + ++++A+ S +LA E + + F S + G Sbjct: 469 NLHGYLAREHIYYGSEQGLDFTNIYFYTVAYYALKTSNQLAIERQQTFDGFSASKYASGE 528 Query: 721 FPIDSIGLLAEVRDELA--------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I + + + + ++ W LK+ V T G+ N N AI PT +I Sbjct: 529 YFDKYINKIWSPKTQTVQELFRRSGIKIPTQADWLALKQSVMTYGIYNQNLQAIPPTGSI 588 Query: 773 ANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + I + SI P + ++ G F+ N Sbjct: 589 SYINNSTSSIHPVVAPIEIRKEGKIGRVYYPAPFMTN----------------------- 625 Query: 832 GNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYR 890 ++LK + A++I P +I++ + + +DQ SL L+ D + + + ++ Sbjct: 626 -------ENLK-FYQDAYQIGPEKIIDTYAEATQHVDQGLSLTLFFDGDATTRDINRAQI 677 Query: 891 QAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 678 YAWRKGIKTLYYIR 691 >gi|229823056|ref|ZP_04449125.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271] gi|229787495|gb|EEP23609.1| hypothetical protein GCWU000282_00351 [Catonella morbi ATCC 51271] Length = 725 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 164/687 (23%), Positives = 287/687 (41%), Gaps = 73/687 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING-- 311 E ++ R E + L + + ++ Y +Y L N Sbjct: 59 EKINYLVDNDFIEREFIEKYPMEFIKELISSTYKMKFRFKSFMSAFKFYTQYALRTNDGA 118 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSS 370 +E + R+A ++ AV + + S + +TPT N+ R +L S Sbjct: 119 RYLERYED---RIAFCALFLADGDQELAVRLRDEMISQRYQPATPTFLNAGRKRRGELVS 175 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL V DD+ I + L++ GG+G + + +R G I S GV+P +K+ Sbjct: 176 CFLIQVSDDMNSIGRTINSALQLSRIGGGVGVNLSNLRAAGDPIKKIENASSGVVPVMKL 235 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G+R GA YL +H D+ FL +K D++ R ++ +PD F Sbjct: 236 LEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKVRVKTLSLGVVVPDKFY 295 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + ++ LFSP +V ++ + E Y+ + EI+ + ISA L ++ Sbjct: 296 ELAAKDEPMYLFSPYDVERIYGR-PFAYVDITEEYDNLVNNPEIRKSK-ISARDLENEIS 353 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI-------TLNSSSEETAVCNLG 603 + E+G+P+I D N +P G + SNLC+EI +N+ E + Sbjct: 354 KLQQESGYPYIVNIDTANRANPI--DGTITMSNLCSEILQVQRPSHINNRQEFEVLGTDI 411 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMG 662 S NL + N + AS++ TAVR L V D N + K N IGLG MG Sbjct: 412 SCNLGSTNIPNMIESPDFASSVETAVRALTYVTDHSNIEAVPTVKHGNDLAHTIGLGGMG 471 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVF 721 + + + Y SPE+VE+ + ++++ + AS ++A+ER ++ +F+ S + G + Sbjct: 472 LHTLFAINQMEYGSPESVELTEAYFYALNYYTLVASNKIAKERGKSFDNFENSKYATGEY 531 Query: 722 PIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 I +V E + + W LK+ V G+ + N +AIAPT +I+ + Sbjct: 532 FDAYIQAPFQVTSEKVAAIMSKVALPTADDWRALKEAVAASGLYHQNRLAIAPTGSISYV 591 Query: 776 CGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNI 834 S S+ P + + + +G L N Sbjct: 592 NETSASLHPITRLIEERQEKKTGKTYYPAPMLSN-------------------------- 625 Query: 835 ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------D 878 + + +A++ D +I+ + QK IDQ SL L++ + Sbjct: 626 -----ETLPYYKSAYDTDMRKVIDVYAAAQKHIDQGMSLTLFMRSELPEGMYEWKEGRTN 680 Query: 879 EPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + + L+ + AW G+K+ YY+R+ Sbjct: 681 KMTTRDLNILRHYAWKKGIKSIYYVRT 707 >gi|158079505|ref|YP_001504318.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] gi|157890349|dbj|BAF81477.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] Length = 716 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 161/717 (22%), Positives = 289/717 (40%), Gaps = 85/717 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L + E + ++ + + L + ++ Sbjct: 25 KEAVRAFFLEHVNKNTVFFYSLEEKISYLIREGYIDKTVITDKYSMEFIKKLFKFIYSKK 84 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++G Y +Y + + +E + RVA E+ A++ + L Sbjct: 85 FRFDTFMGAYRFYKQYAMKTDDGERYLERYED---RVAFNALTMGDGDEELAMKIADELI 141 Query: 348 SFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TPT N+G R + SCFL V D + I L L+K GG+G + + Sbjct: 142 NRRYQPATPTFLNAGRLRRGEYVSCFLIQVEDSMSSIGRTLNSALQLSKLGGGVGINLSN 201 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R LG I G G GV+P +K+ D NQ G+R+GA YL +H D+ +FL R Sbjct: 202 LRALGDPIKGIEGAGSGVVPVMKMLEDGFRYANQLGQRQGAGAVYLNVFHADIMDFLSTR 261 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K + ++ ++ +PD F + LFSP +V+ + + F Y Sbjct: 262 KENAESAKQIKTLSLGVVVPDKFYELAESGDVIHLFSPYDVAKEYGV-PFSFVDIDSEYN 320 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + ++A L ++ + E+G+P+I N +P G + SNLC+ Sbjct: 321 NMIQNPNIR-SKVMNARDLEEEISRLQQESGYPYIMNVSTVNKANPI--DGKIIMSNLCS 377 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + + CNLGSIN+L + + ++I T VR L Sbjct: 378 EILQVQTPSKLNDEQVYEELGADISCNLGSINILNLLETSN----DVVASIETMVRALTY 433 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 + D+ N + K N IGLG MG + + Y SPE++E+ D E I++ Sbjct: 434 ITDVSNIKAVPTIKNGNDKAHTIGLGAMGLHAWFASNQVEYGSPESIEMTDALFELINYA 493 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRTSRL 744 + AS ++A+ER + +F+ S + G + + + L AEV D + + Sbjct: 494 TLVASNKIAKERDTTFYNFENSKYADGSYFDEYVPTLSQEISSKVAEVFDGVVLPNV--K 551 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN-MSGDFTVVN 803 W+ L+ + G+ + N +A+AP +IA + + S+ P + + + +G Sbjct: 552 DWETLRNSIIESGLYHQNRLAVAPNGSIAYVNETTSSLHPIISMIEERQDGKTGKTYYPA 611 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 R+ + + +A++ + +I + Sbjct: 612 P-------------------------------RLSEKTIPYYKSAYDTSMIDVINVYATA 640 Query: 864 QKWIDQAQSLNLYLDE---------------PSGKKLDFIYRQAWLMGLKTTYYLRS 905 QK IDQ SL L++ S + L + AW G+KT YY+R+ Sbjct: 641 QKHIDQGMSLTLFMRSELPENLYPWKVEGGATSTRDLTLLRHYAWKKGIKTIYYVRT 697 >gi|297567588|ref|YP_003686559.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946] gi|297567763|ref|YP_003686734.1| NrdI protein [Meiothermus silvanus DSM 9946] gi|296852037|gb|ADH65051.1| hypothetical protein Mesil_3233 [Meiothermus silvanus DSM 9946] gi|296852212|gb|ADH65226.1| NrdI protein [Meiothermus silvanus DSM 9946] Length = 692 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 167/727 (22%), Positives = 292/727 (40%), Gaps = 72/727 (9%) Query: 202 LIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEM---QCLYPEYFCR 258 L +S L + + R + + REV P E + Y ++F R Sbjct: 4 LELNSALLQRENGFFPLERDREAVREFAREVAAKRRLFPSVLKRLETLIEEGYYEDFFAR 63 Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSRIEM 316 Y E ++ F+ ++ + Y Y L G +E Sbjct: 64 YTPEFLQEIHELAFSYRFEFE--------------SFMAISKFYKDYALKTGDKGQYLED 109 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375 + VA+ LA E +A + + + +TPT N+G +L SCFL Sbjct: 110 YPERVVAVALHLA---KGDEAQARAYVRAMMERRYQPATPTFLNAGRARRGELVSCFLLE 166 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 V D L I L L+K GG+ + + +R G I G G ++GV+P +K+ D Sbjct: 167 VDDSLDSIGYNLNAAMQLSKIGGGVALNLSRLRARGEPIKGVEGAAKGVVPVMKLLEDAF 226 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +Q G+RKGA YL +H D+EE L+ +K D++ R + +PD F + + Sbjct: 227 NYADQMGQRKGAGAVYLNIFHWDLEEVLETKKINADEKSRIQTLALGLVVPDKFFQLAAE 286 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 + +F+P V + E + YE + E+K R + A + ++ + FE Sbjct: 287 GKPFYVFAPYSVYRAFGVPLDEMD-LDTRYEELLEHPEVKK-RPLDAREILTRIARLQFE 344 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLL 608 +G+P++ ++ N +P + +G + SNLCTEI + S NL Sbjct: 345 SGYPYLIYRSTANRANPLKGLGQIKMSNLCTEIFQIQTPSRVGPYGTPEVVGYDVSCNLG 404 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + N + L ++RTA L V D + ++N AIGLG M L Sbjct: 405 SLNIVNVMEGRALRESVRTATDALTAVSDQSEVAQVPGVARANRELHAIGLGAMNLHGYL 464 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQ-ERGAYSSFKGSLWDQGVFPIDSI 726 IPY S EA E A ++++++ S+E+A+ + F+GS + G + + Sbjct: 465 AKNEIPYESAEAREFARAFFMAVNYYSLERSMEIARARGQTFVGFEGSDYASGAYFAKYL 524 Query: 727 GLLAEVRDE------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 E M W L ++V+ G+ ++ +AIAPT +I+ + + Sbjct: 525 ERDWRPTGESVKDLFAGMPLPGPKEWARLAEQVQEHGLYHAYRLAIAPTQSISYLQNATP 584 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S+ P + ++ + +L + Sbjct: 585 SVAPITDLIETRTYGNATTYYPVPYL-------------------------------SPE 613 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 + +A+ +D +I+ + Q+ +DQ S L++D S ++L +Y AW GLK+ Sbjct: 614 TLWYYKSAYRMDMYRVIDLVAGIQEHVDQGVSTVLFVDSQTSTRELARLYIYAWQKGLKS 673 Query: 900 TYYLRSR 906 YY R++ Sbjct: 674 LYYTRTK 680 >gi|312862712|ref|ZP_07722952.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus vestibularis F0396] gi|311101572|gb|EFQ59775.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus vestibularis F0396] Length = 719 Score = 297 bits (761), Expect = 5e-78, Method: Composition-based stats. Identities = 161/716 (22%), Positives = 281/716 (39%), Gaps = 86/716 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + K + + IE + L+ D+ ++ Sbjct: 32 KEALRAFFLENVKPNSMVFNSITDK-INYLIENDYIESEFIGKYEPAFIEKLSADIHTQK 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV E A + N + Sbjct: 91 FRFQSFMAAYKFYQQYALKTNDGESYLESIED---RVLFNALYFADGDENLASDLANEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + Y+ Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARNNEDMYLFSPYSVEKEYGK-PYNYIDITAMYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I + I+A L ++ + E+G+P+I D N G + SNLC+ Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANR--YNPIDGKIVMSNLCS 383 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + E CNLGS N+L + +I+ R L Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N GLG MG S L HI Y SPE+VE + +++ Sbjct: 439 VTDSSSIDAVPSIKNGNQQAHTFGLGAMGLHSYLAKHHIEYGSPESVEFTNIYFMLMNYW 498 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744 + S +A+E + + F+ S + G + + + E+ + + + Sbjct: 499 TLVESNNIARERQETFVGFENSKYADGSYFDKYVTGQYVPKSDRIKELFEGHFIPQA--K 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYPA 616 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + L S I + +A+++D +I+ + Sbjct: 617 NSL-----------------------STDTIPF--------YTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|262275642|ref|ZP_06053451.1| ribonucleotide reductase of class II (coenzyme B12-dependent) [Grimontia hollisae CIP 101886] gi|262219450|gb|EEY70766.1| ribonucleotide reductase of class II (coenzyme B12-dependent) [Grimontia hollisae CIP 101886] Length = 718 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 139/655 (21%), Positives = 263/655 (40%), Gaps = 62/655 (9%) Query: 293 FEYLGLQILYDRYF--LHINGSRIEMPQAFFMRVAMGLA--LKETEKEKRAVEFYNLLSS 348 ++ ++I +Y + E F RVA LA +E+ +EK EF Sbjct: 20 YQATSMEIWDSKYRLKSKHGDAIDETLDDTFKRVARALADLEEESVREKWYNEFL-WALR 78 Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + N+G + +C ++ T+ D + I G + E + K G+G D Sbjct: 79 HGAIPAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYD 138 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + G + G + F+ + + V+ G R+GA ++ H DV EF+ Sbjct: 139 FSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVMEFI 198 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP----------DEVSDLHDL 513 ++ + R N + I + F++ V + W L P ++ + ++ Sbjct: 199 RAKR----EDGRLRQFNLSLLITEEFIEAVKNDGEWQLIFPVTEKEARQDGTDLYNDDNI 254 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 ++ E R K++R + A LW +++ ++ P D N + Sbjct: 255 VWADWPSKEGLLEDDQGRVACKIYRTMPARNLWNVIMSSTYDYAEPGFILIDKVNQMNNN 314 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTA 628 + ++N C E L C LGS+NL + FD++ + Sbjct: 315 WFCEDIRATNPCGEQPLPPY----GACLLGSVNLTKFVRDPFTENARFDWEMYRKVVAIF 370 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R+LDNV++IN +EK ++ T R G+G +G S L +L Y S ++ ++ + Sbjct: 371 TRMLDNVVEINQLPLEKQREEIQTKRRHGMGFLGLGSTLTMLRHKYGSAASIAFTEQISQ 430 Query: 689 FISFHAISASVELAQERGAYSSFKG----SLWDQGVFP---IDSIGLLAEVRDELAMNRT 741 ++ +V+LA E+G + + P D I + +V+ ++ + Sbjct: 431 EMAITGWEQAVKLAAEKGPAPVMEQEFEVTPKMMRQRPEMAKDGIKVGDKVKGKVLHAKY 490 Query: 742 SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793 SR +L +++ G R ++ +IAPT TI+ S I+PS+ + Y ++ Sbjct: 491 SRYMQQIGEVRPDLIEKLVETGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRN 550 Query: 794 NMS---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + V+ F L R+L + + + + L + TA + Sbjct: 551 VIKPGKKSKESVDVFSFELLAYRELINAKAMPYSTKEE----------EQLPEYFITADD 600 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 I P +E + Q+WID + S + + + IY A+ GLK R Sbjct: 601 ITPSQHVEVQAAAQRWIDSSISKTANVPTDFPFENFKDIYMDAYDKGLKGCTTFR 655 >gi|322372697|ref|ZP_08047233.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C150] gi|321277739|gb|EFX54808.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C150] Length = 719 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 161/716 (22%), Positives = 280/716 (39%), Gaps = 86/716 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + K + E IE + L+ ++ + Sbjct: 32 KEALHAFFLENVKPNSMAFNSI-TEKINYLIENDYIESEFIGKYEPAFIEKLSAEIYSQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV E A + N + Sbjct: 91 FRFQSFMSAYKFYQQYALKTNDGQAYLESIED---RVLFNALYFADGDEHLASDLANEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDILAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + Y+ Sbjct: 268 KENADEKVRVKTLSLGVTVPDKFYELARKNEEMYLFSPYSVEKEYGK-PFNYIDITAMYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I + I+A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 327 ELVANPNITKTK-INARELETEISKLQQESGYPYIVNVDTANRHNPI--DGKIVMSNLCS 383 Query: 587 EITLNSSSEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + E CNLGS N+L + +I+ R L Sbjct: 384 EILQVQTPSELNDAQEFVKLGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N GLG MG S L HI Y SPE+VE + +++ Sbjct: 439 VTDSSSIEAVPSIKNGNQQAHTFGLGAMGLHSYLAKNHIEYGSPESVEFTNIYFMLMNYW 498 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744 + S +A+E + + F+ S + G + + + E+ D + + Sbjct: 499 TLVESNNIARERQETFVGFEKSKYADGSYFDKYVTGQYVPKSDRVKELFDGHFIPQA--K 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W+EL++ VK G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 DWEELRELVKKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP- 615 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + D + +A+++D +I+ + Sbjct: 616 ------------------------------ANGLSTDTIPFYTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 646 TEHVDQGLSLTLFLRSELPKEIYEWKTENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|257870056|ref|ZP_05649709.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] gi|257804220|gb|EEV33042.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] Length = 719 Score = 297 bits (760), Expect = 6e-78, Method: Composition-based stats. Identities = 155/709 (21%), Positives = 278/709 (39%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + IE + L L + Sbjct: 32 KEALAAFFKENVEPNTMTFDSVTDK-IDYLIEHDYLEEAFIRKYRPAFIEELYQFLSEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FTFKSFMAAYKFYSQYALKTNDGTAYLESYED---RVAFNALYFADGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + Sbjct: 148 YQRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNAIGRGINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGI-PFSYIDITKEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P+I D N G + SNLC+ Sbjct: 327 NLVMNPNIRKTK-IKARDLENEISKLQQESGYPYIINIDTANR--SNPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N D ++R R L V D Sbjct: 384 EILQVQEPSVINGKQEYEVLGTDISCNLGSTNIVNLMDSPDFGKSVRAMTRALTFVTDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + + Y SPE++E D +++ + S Sbjct: 444 DIDVVPSIQNGNALNHTIGLGAMGLHTYFAKNQMEYGSPESLEFTDLYFMLLNYWTLVES 503 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + D I + + + + S W L + Sbjct: 504 NNIAKERGEVFHNFEKSAYADGSYFTDYITGDYQPKSDKIKALFDGVFIPSGEDWAALAE 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 VK G+ + N +A+AP +I+ I S SI P + + + G +L N+ Sbjct: 564 AVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSNDT 623 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A+++D +I+ + QK +DQ Sbjct: 624 IG-------------------------------YYRSAYDMDMRKVIDVYATAQKHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 S+ L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSMTLFMRSDIPEGLYEWKETSKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|114797863|ref|YP_760266.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomonas neptunium ATCC 15444] gi|114738037|gb|ABI76162.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Hyphomonas neptunium ATCC 15444] Length = 731 Score = 297 bits (760), Expect = 7e-78, Method: Composition-based stats. Identities = 144/655 (21%), Positives = 247/655 (37%), Gaps = 86/655 (13%) Query: 294 EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHF 351 L +I +Y + A RVA +A E ++ F + L+ F F Sbjct: 5 TPLAAEIWEKKYRFRSDEGEDVDLAATLSRVANAVAKAENPANRKVWRARFRDALTDFRF 64 Query: 352 MCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRG 409 + + L +GT L +CF+ T+PD+L GIF L+E A+ + GG+G D++ +R Sbjct: 65 IPAGRILAGAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIRP 124 Query: 410 LGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNT 469 GA + G ++ G + F+ + + G+R+GA+ L H D+E F+D ++ Sbjct: 125 SGAPVMGVGAQASGPLSFMDTWDAMCRTIMSAGQRRGAMMGCLRIDHPDIEAFIDAKR-- 182 Query: 470 GDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQA 529 D R + N + + D FM + WTL Sbjct: 183 --DGARFRNFNLSVLVTDEFMAALEAGRDWTLSF-------------------------- 214 Query: 530 DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEIT 589 + +R + A LW +++ ++ P + F D N + + + +SN C E Sbjct: 215 ---NGQPYRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGEQM 271 Query: 590 LNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT-----AVRVLDNVIDINCHTIE 644 L C LGSINL ++ K+ T A+R LDNVIDI+ + +E Sbjct: 272 LPPY----GACLLGSINLARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLE 327 Query: 645 KAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE 704 + + R +GLG+ G AL Y S +AV +++ M I A AS LA E Sbjct: 328 QQGEEARAKRRLGLGVTGLADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAE 387 Query: 705 RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCM 764 +G Y F + + + + G+RN Sbjct: 388 KGPYPLFDK---------------------AILDRPNLLGLDPDTRALISEHGLRNGCLT 426 Query: 765 AIAPTATIANIC-GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 +IAPT T + + VS ++P + Y + D T V E ++D Sbjct: 427 SIAPTGTTSLLADNVSSGVEPVFAFSYSRKVRQADGTSV---------------EEPVTD 471 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + + P + +A + P + + Q+++D + S + + S Sbjct: 472 YALRVWHRLHGDAAPPA--DVFVSAQTLTPQDHLRMQASAQRFVDSSISKTVNCPADISF 529 Query: 883 KKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 +YR+ + +G K R + T S + P + Sbjct: 530 DAFKDVYREGYRLGCKGLTTYRPNAITGSVLSVAETPVQADVPETPLAPRARKLE 584 >gi|262184724|ref|ZP_06044145.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] Length = 731 Score = 297 bits (760), Expect = 7e-78, Method: Composition-based stats. Identities = 162/750 (21%), Positives = 286/750 (38%), Gaps = 99/750 (13%) Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 N++D + + I +++ + V R ++ L + Sbjct: 35 ALNAQLNLFDASGKIQFDKD-IQAAQDYVTHH-----VAPRMHQFDSTKQRLEWLVDN-- 86 Query: 242 KATHHEMQCLYPEYF--CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 + + LY + F Y + F F L+ Sbjct: 87 EYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFLGAF--------------KFFTSYALK 132 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 F +E + RVA E+ A + + + + F +TPT Sbjct: 133 TFDGSRF-------LEGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQPATPTFL 182 Query: 360 NSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N+G ++ SCFL + D+L I ++ L+K GG+ + +R GA I Sbjct: 183 NAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPIKKIE 242 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 ++ GV+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 243 NQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKT 302 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 ++ IPD+ + +N LFSP +++ + + + E Y+ I Sbjct: 303 LSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMS-ITEYYDELVANPRISHT- 360 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------- 590 I A + + + FE+G+P+I F+D N +P G ++ SNLC+EI Sbjct: 361 TIKAREFFTTLAELQFESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYG 418 Query: 591 ----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEK 645 ++ + CNLGS+N+ F + T+ TAVR L V D+ N + Sbjct: 419 ASGDYTTVGQDISCNLGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPS 473 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 N + AIGLG M L IPY EA++ + +++HA+ AS LA E+ Sbjct: 474 IAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEK 533 Query: 706 -GAYSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTI 756 ++ F+ S + G + I E + R W LK +V Sbjct: 534 GQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQVMQD 593 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDL 815 G+ N+ A+ PT +I+ I + SI P + ++ G Sbjct: 594 GIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP----------- 642 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + +D + ++ + +I++ + + +DQ SL L Sbjct: 643 --------------------EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTL 682 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + ++ AW G+KT YY+R Sbjct: 683 FFTADTTTRDINKAQIYAWKAGIKTLYYIR 712 >gi|12045086|ref|NP_072897.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma genitalium G37] gi|255660232|ref|ZP_05405641.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma genitalium G37] gi|1350599|sp|P47473|RIR1_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit alpha; AltName: Full=Ribonucleotide reductase gi|3844834|gb|AAC71452.1| ribonucleoside-diphosphate reductase, alpha chain [Mycoplasma genitalium G37] gi|166078758|gb|ABY79376.1| ribonucleoside-diphosphate reductase, alpha chain [synthetic Mycoplasma genitalium JCVI-1.0] Length = 721 Score = 297 bits (760), Expect = 7e-78, Method: Composition-based stats. Identities = 168/759 (22%), Positives = 302/759 (39%), Gaps = 83/759 (10%) Query: 194 SESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYP 253 +E D+E+ + F+++ I + +++ + + ++ Sbjct: 12 TEEDVESYISFNAQAKIYDDFAIDLQAVESYIQEHVKPKTKVFHSTKERLDF-------- 63 Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 I+ + + + R ++G Y+ Y L + Sbjct: 64 -----LIKNDYYDEKIINMYSFEQFEEITHKAYSYRFRYANFMGAFKFYNAYALKTFDGK 118 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCF 372 + RV M + + +A++ + F +TPT N+ + + SC+ Sbjct: 119 YYLENYE-DRVVMNVLMLANGNFNKALKLLKQIILNRFQPATPTFLNAGRKKRGEFVSCY 177 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ L+K GG+ + +R GA I +S G+IP +K+ Sbjct: 178 LLRIEDNMESIGRAITTTLQLSKRDGGVALLLSNLREAGAPIKKIENQSSGIIPIMKLLE 237 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D+ NQ G+R+GA YL H DV +FLD ++ D++ R ++ IPD+ + Sbjct: 238 DSFSYSNQLGQRQGAGAVYLHCHHPDVMQFLDTKRENADEKIRIKSLSLGLVIPDITFQL 297 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 N LFSP D++ YGK ++ + ISA ++ + Sbjct: 298 AKNNEMMALFSP---YDIYQEYGKALSDISVTEMYYELLENQRIKKTFISARKFFQTIAE 354 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AV 599 + FE+G+P+I F D N R H + SNLC+EI S E Sbjct: 355 LHFESGYPYILFDDTVNRR--NAHKNRIVMSNLCSEIVQPSLPSEFYSDLTFKKVGSDIS 412 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI-EKAKKSNHTHRAIGL 658 CNLGS+N+ + +LA I+ A+ LD V I+ KK N + A+GL Sbjct: 413 CNLGSLNIARAMESG----SELAELIQLAIESLDLVSRISSLETAPSIKKGNSENHALGL 468 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQ 718 G M L I Y S EAV+ + +++HA SAS +LA E G + F+ + + Sbjct: 469 GAMNLHGFLATNAIYYDSKEAVDFTNIFFYTVAYHAFSASNKLALELGKFKDFENTKFAD 528 Query: 719 GVFPI-------DSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 G + D + + D+ + ++ W +L ++ G+ NS+ MAIA Sbjct: 529 GSYFDKYTKVASDFWTCKTEKVQALFDKYQVKIPTQENWKQLVASIQKDGLANSHLMAIA 588 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +I+ + + S+ P + V+ V ++ Sbjct: 589 PTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRIYVPAY---------------------- 626 Query: 828 DGSIGNIERIPDDLKKIHAT-AFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 ++ +D + A+E+ +I + Q+ +DQA SL L++ + + + L Sbjct: 627 --------KLDNDNYQYFKDGAYELGFEPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 678 Query: 886 DFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 + Y A+ G + YY+R R V K + + Sbjct: 679 NKAYIYAFKKGCSSIYYVRVR--QDVLKDSEDHTIKIKD 715 >gi|73541801|ref|YP_296321.1| ribonucleotide reductase large subunit [Ralstonia eutropha JMP134] gi|72119214|gb|AAZ61477.1| Ribonucleotide reductase large subunit [Ralstonia eutropha JMP134] Length = 828 Score = 297 bits (760), Expect = 7e-78, Method: Composition-based stats. Identities = 144/637 (22%), Positives = 245/637 (38%), Gaps = 76/637 (11%) Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379 RVA LA E ++E F F+ + +GT L +CF+ V D Sbjct: 40 RVARALAQAETEDQREGWTARFL-WAQESGFVPAGRINSAAGTGIQATLINCFVQPVGDS 98 Query: 380 -------LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 I+ A+ + A + GG+G D++ +R GA + T+ ++ G + F+KV + Sbjct: 99 VSEPRGGRPSIYTAVAQAAETMRRGGGVGYDFSAIRPAGALVRATHSRASGPVSFMKVFD 158 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 + V G R+GA L H D+E F+ + D+ + N + + D FM+ Sbjct: 159 ASCATVESAGARRGAQMGVLRCDHPDIESFIHAK-----DKGDLSNFNISIGVTDEFMRA 213 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTM 552 V ++ L E G AY + Q V+R++ A LW +++ Sbjct: 214 VERDEEVELVHEAEPGADLIAGG-----AYRRDDGQ------WVYRRMPARLLWDQVMHA 262 Query: 553 LFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 ++ P I F N + + + ++N C E L C LGSI+L Sbjct: 263 TYDHAEPGILFLSRINADNNLYYCETIEATNPCAEQPLPPY----GCCCLGSIDLTRFVR 318 Query: 613 NNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSAL 667 FD+D A +R + R+LDNV+D+ + + + R +GLG +G SAL Sbjct: 319 QPFTPDSDFDFDAFAEVVRVSTRMLDNVLDVTFWPLPEQQAEAQAKRRVGLGFLGLGSAL 378 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG 727 +L + Y S A +A E + A AS ELA E+GA+ F + Sbjct: 379 VMLGLRYDSEPARVVAARIAERMRDEAYLASTELAAEKGAFPLFDADAY----------- 427 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPS 785 + + + +++ + G+RNS+ ++IAPT TI A S I+P+ Sbjct: 428 ---------LQSGFASRLPEPVRQAIMRNGLRNSHLLSIAPTGTITLAFADNASNGIEPA 478 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 + Y + + + R H G ++ ++PD Sbjct: 479 FSWTYQRKKR-----------MPDNTYRTYEVADHAWRRYRHTG--ADMNKLPDA----F 521 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 TA ++ + + Q +ID + S + + + + +Y +AW GLK R Sbjct: 522 VTALQMSALDHMRMLQAVQPYIDTSISKTVNVPEDYPYEAFRNLYLEAWKAGLKGLATYR 581 Query: 905 SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIP 941 S S + D P Sbjct: 582 PNSVLGAVLSVSVPAVAASSTATTVDDPLVRPYGSRP 618 >gi|297243044|ref|ZP_06926982.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD] gi|296889255|gb|EFH27989.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis AMD] Length = 735 Score = 297 bits (760), Expect = 7e-78, Method: Composition-based stats. Identities = 167/736 (22%), Positives = 286/736 (38%), Gaps = 82/736 (11%) Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-------PEYFCRYI 260 I +Y + A L + + ++ +K + + E I Sbjct: 24 ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSDYVQEHSMKFASTRERLNYLI 83 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + + D L + +LG Y Y L + + Sbjct: 84 DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGKQYLENFA 143 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379 A+ L L + EK A+ + + + + F +TPT N G + SCFL + D+ Sbjct: 144 QRAAAVALELAD-GDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 202 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I + L+K GG+ T +R LGA I +S GV+P +K+ D+ N Sbjct: 203 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 262 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 263 QLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 322 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558 LFSP D+ YGK F ++ +K I A + + + FE+G+ Sbjct: 323 ALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTLAEIQFESGY 379 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSIN 606 P+I F+D N +P G + SNLC+EI S CNLGS+N Sbjct: 380 PYILFEDTVNRTNPI--KGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLN 437 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 + L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 438 IAKAMDG------DLGASVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHG 491 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724 L H+ Y S EA++ D +++HA AS LA ERG A++SFK S + + + Sbjct: 492 FLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFASFKTSAYAKPAGKGN 551 Query: 725 SIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++ + S W++L+ + G+ N A+ PT Sbjct: 552 YFDKYTDGSRSLEPRTQAVRDLFARFNVAIPSVSDWEQLRDEILRDGIYNEYLQAVPPTG 611 Query: 771 TIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + ++ G +++ N+ Sbjct: 612 SISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM------------------ 653 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 + A+EI +I++ + + +DQ SL L+ + + + L+ Sbjct: 654 -------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKA 700 Query: 889 YRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 701 QIYAWRKGIKTLYYIR 716 >gi|116493226|ref|YP_804961.1| ribonucleotide-diphosphate reductase subunit alpha [Pediococcus pentosaceus ATCC 25745] gi|116103376|gb|ABJ68519.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Pediococcus pentosaceus ATCC 25745] Length = 721 Score = 297 bits (759), Expect = 7e-78, Method: Composition-based stats. Identities = 164/717 (22%), Positives = 292/717 (40%), Gaps = 86/717 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 RE L K+ +A + L + E+ ++A L+ E DF + L + LK + Sbjct: 32 REALAAFLKENVQANTMQFDSLRERFDYLLKEDYIEAALVEEYSFDF-IEKLYDFLKQQ- 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y +Y L N + + + F RVAM E+ A+ + + Sbjct: 90 DFHFQSFMAAYKFYAQYALKTNNNEYYL-ENFIDRVAMNALYFADGNEELAMNIADEIIH 148 Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+ +L SCFL DD+ I + L+K GG+G + T + Sbjct: 149 QRYQPATPSFLNAGRKHRGELVSCFLIQANDDMNSIGRTINSALQLSKLGGGVGINLTNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGIEGAASGVVPVMKLLEDSFSYANQLGQRQGAGVVYLNVFHPDIVSFLSAKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD F + + LFSP V ++ + + Y+ Sbjct: 269 ENADEKIRVKTLSLGVVVPDKFYDLIKHDEDMYLFSPYSVEKVYGE-PYAYVDITKEYDN 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 IK F+ + A + ++ + E+G+P+I D N +P G + SNLC+E Sbjct: 328 MVKNPAIKKFK-VKARNIENEISKLQQESGYPYIVNVDTANRENPIY--GKIVMSNLCSE 384 Query: 588 ITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGS N++ ++ T VR L V Sbjct: 385 IMQVQTPSVIDNKQNYTKLGTDISCNLGSTNIVNMMQTPH-----FGKSVETMVRALTFV 439 Query: 636 IDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + + N IGLG MG L H+ Y +++E +++ Sbjct: 440 TDHSDIDVVPSIQNGNALAHTIGLGAMGLHGYLAKNHLYYGEADSIEFTSVYFMLLNYWT 499 Query: 695 ISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + AS ++A+E+ + +F S + G + + + E+ + + + Sbjct: 500 LKASNQIAKEKNQVFHNFDKSKYADGSYFDKYVENDFGPKSNRVKELFNGIEIPSV--ED 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W +LK V G+ + N MA+APT +I+ I + S+ P + + G Sbjct: 558 WKQLKADVMADGLYHQNRMAVAPTGSISYINDATASLQPIVNKIEERQEKKIGKIYFPAP 617 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L N+ K + +A++ID +I+ + Q Sbjct: 618 YLSND-------------------------------TLKYYQSAYDIDMRKVIDIYAAAQ 646 Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ ++ + + L+ + A G+K+ YY+R+ Sbjct: 647 QHVDQGMSMTFFMRSTIPAGIYDWKEGRTDKMTTRDLNILRNYAHHEGIKSIYYVRT 703 >gi|296123412|ref|YP_003631190.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Planctomyces limnophilus DSM 3776] gi|296015752|gb|ADG68991.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Planctomyces limnophilus DSM 3776] Length = 1032 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 130/658 (19%), Positives = 231/658 (35%), Gaps = 75/658 (11%) Query: 325 AMGLALKETEKEKRAVEFYNLLS------SFHFMCSTPTLFNSGTRH--PQLSSCFLTTV 376 + V Y+ ++ F T + + T + PQ S+CF+ +V Sbjct: 153 CLHQYGSFNSPVWFNVGLYHQYGVAGSKGNYRFDLKTQEVVRAETSYEFPQASACFIQSV 212 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ I AML K+ G G D + +R + G G G + F++V + A Sbjct: 213 DDNMEDIMRLATSEAMLFKFGSGTGTDLSSIRSAKEKLSG-GGTPSGPLSFMRVYDQIAA 271 Query: 437 AVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRR--------------------R 475 V GGK R+ A L+ WH D+ EF+ + R Sbjct: 272 VVKSGGKTRRAAKMQSLKDWHPDILEFIQCKLKEEKKARVLIESGEYDSNFNGEAYGSIM 331 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 + N + + D FM+ +N W + + Y E Y Sbjct: 332 YQNANLSVRLSDEFMRAYEENKKWVTHWVTDATKPGPAY----EARY------------- 374 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSE 595 + R+M + G P + F N + G +++SN C+E Sbjct: 375 ---------VMRQMAEGAWHCGDPGVQFDTIINRWHTCPNDGRINASNPCSEYMF----L 421 Query: 596 ETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 + CNL S+NL + +FD ++ S I + + ++D + + ++H +R Sbjct: 422 DDTACNLASLNLRKFQREDGRFDVERYRSAINIFLTAQEILVDHASYPTPQIAANSHKYR 481 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS 714 +GLG S L + IPY S I ++ A S +A G + ++ + Sbjct: 482 PLGLGYANLGSLLMSMGIPYDSAAGRGICGALTSLLTGQAYLTSSRIAAFAGPFEGYRNN 541 Query: 715 LWDQGVFPIDSIGLLA--EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + + + + + WD++ + G RNS +APT TI Sbjct: 542 ADPMLRVMRMHRDAVDRIDSSCPEELRKAAEEVWDDVVDSGRRFGFRNSQATVLAPTGTI 601 Query: 773 ANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK--YHD 828 A + + I+P + Y + G +VN + LK + +K Sbjct: 602 AFMMDCDTTGIEPDIALVKYKQLAGGGLMKIVNRTVPLALKTLGYDSPEVERIVKAIEEH 661 Query: 829 GSIGNIERIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 +I + D + AF I I+ + Q ++ A S + + + Sbjct: 662 DTIEAATDLSPDHLAVFDCAFKPASGTRSIQWRAHIKMMAAAQPFLSGAISKTVNMPADS 721 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 + + ++ Y + W +GLK R S S + KG DG P + Sbjct: 722 TVEDIEKAYAEGWRLGLKALAVYRDGSKQSQPLNVKKGGDGNKEVAPGQPVRRRLPTT 779 >gi|259046998|ref|ZP_05737399.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Granulicatella adiacens ATCC 49175] gi|259036317|gb|EEW37572.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Granulicatella adiacens ATCC 49175] Length = 719 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 156/693 (22%), Positives = 277/693 (39%), Gaps = 83/693 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING- 311 E IE + L + ++ ++ Y +Y + N Sbjct: 52 DEKLDYLIEHDYLEAEFLGKYNRKFVKKLMKETYKKKFRFRSFMSAFKFYKQYAMKTNDG 111 Query: 312 -SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLS 369 +E + R+ E+ A + + + + +TPT N+ R +L Sbjct: 112 QRYLERFED---RIVFNALFLADGDEQLAHDLAEEMITQRYQPATPTFLNAGRKRRGELV 168 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL DD+ I + L++ GG+G + VR G I S GV+P +K Sbjct: 169 SCFLIQTTDDMNSIGRTINSALQLSRIGGGVGVSLSNVRAAGDPIKKIENASSGVVPIMK 228 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D+ NQ G+R GA YL +H D+ FL +K D++ R ++ +PD F Sbjct: 229 LLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKVRVKTLSLGLVVPDKF 288 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 + + + LFSP +V ++ + + + Y+ + EI+ + + A L ++ Sbjct: 289 YELIKNDDIMYLFSPYDVERIYGV-PFSYVDITKEYDNMVNNPEIRKSK-LRARDLENEI 346 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI------------TLNSSSEET 597 + E+G+P++ D N G + SNLC+EI Sbjct: 347 SKLQQESGYPYVVNIDTANR--VNPIDGKIIMSNLCSEILQVQEPSVINNAQEYEHLGTD 404 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS N++ + FD ++ AVR L V D + + K N I Sbjct: 405 ISCNLGSTNIVNLMKSPDFD-----RSVDVAVRALTFVTDHSSIDAVPTVKNGNSKAHTI 459 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSL 715 GLG MG + L + Y SPE++E D ++F+ + AS ++A+ER ++ F+ S Sbjct: 460 GLGAMGLHTFFALNQMEYGSPESIEATDLYFRMLNFYTLKASNKIAKERGKSFEGFERSK 519 Query: 716 WDQGVFPIDSIGL------LAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 + G + I + + + W +LK+ V + G+ + N +AIAPT Sbjct: 520 YATGEYFDSYIAEEVQIQSDKVKKIFAKLPIPTVEDWKQLKEEVMSGGLYHQNRLAIAPT 579 Query: 770 ATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD 828 +I+ + S S+ P + + + +G FL N+ Sbjct: 580 GSISYVNETSASLHPITRLIEERQEKKTGKTYYPAPFLSND------------------- 620 Query: 829 GSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------- 877 + +A++ID +I+ + QK IDQ SL L++ Sbjct: 621 ------------TLPFYKSAYDIDMRKVIDVYAAAQKHIDQGMSLTLFMRSELPEGLYEW 668 Query: 878 -----DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ + + L+ + AW G+K+ YY+R+ Sbjct: 669 KEGRTNKMTTRDLNILRNYAWNKGIKSIYYVRT 701 >gi|227833717|ref|YP_002835424.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] gi|227454733|gb|ACP33486.1| ribonucleoside-diphosphate reductase alpha chain [Corynebacterium aurimucosum ATCC 700975] Length = 744 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 162/750 (21%), Positives = 286/750 (38%), Gaps = 99/750 (13%) Query: 182 LSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQ 241 N++D + + I +++ + V R ++ L + Sbjct: 48 ALNAQLNLFDASGKIQFDKD-IQAAQDYVTHH-----VAPRMHQFDSTKQRLEWLVDN-- 99 Query: 242 KATHHEMQCLYPEYF--CRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQ 299 + + LY + F Y + F F L+ Sbjct: 100 EYYERDFLELYDDAFLCAMYDRAHRAKHQFRTFLGAF--------------KFFTSYALK 145 Query: 300 ILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLF 359 F +E + RVA E+ A + + + + F +TPT Sbjct: 146 TFDGSRF-------LEGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQPATPTFL 195 Query: 360 NSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTN 418 N+G ++ SCFL + D+L I ++ L+K GG+ + +R GA I Sbjct: 196 NAGKAQRGEMVSCFLLRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPIKKIE 255 Query: 419 GKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHD 478 ++ GV+P +K+ D+ NQ G R+GA YL H D+ FLD ++ D++ R Sbjct: 256 NQASGVVPVMKILEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKT 315 Query: 479 MNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR 538 ++ IPD+ + +N LFSP +++ + + + E Y+ I Sbjct: 316 LSLGVVIPDITFRLAKENKDMHLFSPYDITREYGVAMSDMS-ITEYYDELVANPRISHT- 373 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------- 590 I A + + + FE+G+P+I F+D N +P G ++ SNLC+EI Sbjct: 374 TIKAREFFTTLAELQFESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYG 431 Query: 591 ----NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEK 645 ++ + CNLGS+N+ F + T+ TAVR L V D+ N + Sbjct: 432 ASGDYTTVGQDISCNLGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPS 486 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 N + AIGLG M L IPY EA++ + +++HA+ AS LA E+ Sbjct: 487 IAHGNASMHAIGLGQMNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEK 546 Query: 706 -GAYSSFKGSLWDQGVFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTI 756 ++ F+ S + G + I E + R W LK +V Sbjct: 547 GQRFTGFEESTYATGAYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQVMQD 606 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDL 815 G+ N+ A+ PT +I+ I + SI P + ++ G Sbjct: 607 GIYNAYLQAVPPTGSISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP----------- 655 Query: 816 WDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNL 875 + +D + ++ + +I++ + + +DQ SL L Sbjct: 656 --------------------EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTL 695 Query: 876 YL-DEPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + + + ++ AW G+KT YY+R Sbjct: 696 FFTADTTTRDINKAQIYAWKAGIKTLYYIR 725 >gi|319938785|ref|ZP_08013149.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] gi|319811835|gb|EFW08101.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] Length = 719 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 160/715 (22%), Positives = 291/715 (40%), Gaps = 84/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + + E ++ + ++ + LA + +++ Sbjct: 32 KEALEAFFKENVEPNTKKFSSITEKIHYLIQENYLEKEFIQLYSPEY-IEELATFI-HDQ 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y++Y L N + ++ RV E A + N + Sbjct: 90 DFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKDIANEIIH 148 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + + Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD F + +N LFSP + + + + E Y+ Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSIEREYGV-PFAYIDITEKYDE 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +I + I A L ++ + E+G+P++ D N +P G + SNLC+E Sbjct: 328 LVANPKINKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSE 384 Query: 588 ITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I S CNLGS N++ + +IRT R L V Sbjct: 385 ILQVQESSLLNDAQEFLRLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y S E+VE +++ Sbjct: 440 TDSSHIKAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIAYGSAESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ ++ + + Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPTAA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPQGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|197122652|ref|YP_002134603.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter sp. K] gi|196172501|gb|ACG73474.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. K] Length = 925 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 127/651 (19%), Positives = 236/651 (36%), Gaps = 71/651 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G E + E +L+ ++P FN HPQ S+CF+ V D + I Sbjct: 116 GYFATEGDAVAFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444 ML KY G G++ + +R + G G++ G + F++ + A + GGK R Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 234 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNTAN 483 + A L+ H DV EF++ + + D + N + Sbjct: 235 RAAKMVILDVDHPDVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 + D FM+ V ++ W + R + + I A Sbjct: 295 RVTDAFMRAVLEDREW---------------------------KLTARTDGQALETIRAR 327 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 L R++ + G P + F N P + +++SN C+E + + CNL Sbjct: 328 DLMRQITEAAWLCGDPGMQFDTTINAWHPCPNTDRINASNPCSEYMF----LDDSACNLA 383 Query: 604 SINLLAHFANNQ-FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S+NL+ + FD + + + + ++ + K++ +R +GLG Sbjct: 384 SLNLMHFRSIEGGFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYAN 443 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG--- 719 + L +PY S A ++ A + S +A G ++ ++ + Sbjct: 444 LGALLMASGLPYDSDGGRACAAAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGVI 503 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778 + L+ E + +R W + ++ G RN +APT TI + Sbjct: 504 RKHAQHVDLVDPTLVEPGLLAAARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCD 563 Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIE 835 + I+P + Y K G +VN+ + L++ E + S L++ D +I Sbjct: 564 TTGIEPDIALVKYKKLVGGGMLKIVNNTVPLALQRLGYSSEEITSVLQFIDEVETIEGAP 623 Query: 836 RIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 + + + AF I M I Q ++ A S + + + + ++ Sbjct: 624 GLRPEHAAVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 Y ++W +GLK R S +T K + K +AV Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEEKKDAVEPRLARRRLPDE 734 >gi|315641367|ref|ZP_07896442.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus italicus DSM 15952] gi|315482860|gb|EFU73381.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus italicus DSM 15952] Length = 719 Score = 297 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 158/708 (22%), Positives = 285/708 (40%), Gaps = 72/708 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L K+ ++ + EE ++ L++ +F + L L + Sbjct: 33 EALAAFLKENVAPNTKTFASIHDKIAYLVEEEYLEEEFLNKYQPEF-IEQLYAFLAEQSF 91 Query: 291 FAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 92 VFHSFMAAYKFYSQYALKTNNGEEYLESYED---RVAFNALYFANGDEELALALADEMIH 148 Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+ R +L SCFL + DD+ I + L++ GG+G + + Sbjct: 149 QRYQPATPSFLNAGRKRRGELVSCFLIQLTDDMNSIGRGINSALQLSRIGGGVGITLSNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R G+ I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGSPIKGYEGAASGVMPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIMTFLSAKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 269 ENADEKIRVKTLSLGVLVPDKFYELTRKNEEMYLFSPYSVEREYGV-PFSYIDITEKYDE 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 I+ + I A L ++ + E+G+P+I D N +P G + SNLC+E Sbjct: 328 LVTNPRIRKTK-IKARDLENELSKLQQESGYPYIINIDTANRANPVN--GKIIMSNLCSE 384 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N+ E + S NL + N ++RT R L V D + Sbjct: 385 ILQVQEPSLINAKQEYDVLGTDISCNLGSTNIVNLMSSPDFGKSVRTMTRALTFVTDASD 444 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + NH + IGLG MG + + Y SPE++E D +++ + S Sbjct: 445 IDVVPSIQNGNHLNHTIGLGAMGLHTYFAKNQMEYGSPESIEFTDIYFTLLNYWTLVESN 504 Query: 700 ELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRD------ELAMNRTSRLPWDELKKR 752 +A+ER + +F+ S + G + I + + + + W L Sbjct: 505 TIAKERQLVFHNFEKSSYADGSYFDKYIQGNHQPKSAKVKELFAGVFIPTSDDWQVLADN 564 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811 VK G+ + N +A+AP +I+ I S S+ P + + + G ++L NE Sbjct: 565 VKRDGLYHQNRLAVAPNGSISYINDTSASLHPITRLIEERQEKKIGKIYYPAAYLSNETI 624 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + +A+++D +I+ + Q+ IDQ Sbjct: 625 G-------------------------------YYKSAYDMDMRKVIDVYATAQQHIDQGM 653 Query: 872 SLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 S+ L+L + + + L+ + A+ G+K+ YY+R+ Sbjct: 654 SMTLFLRSDMPEGLYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|325973167|ref|YP_004250231.1| ribonucleoside-diphosphate reductase, subunit alpha [Mycoplasma suis str. Illinois] gi|323651769|gb|ADX97851.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma suis str. Illinois] Length = 662 Score = 296 bits (758), Expect = 9e-78, Method: Composition-based stats. Identities = 162/672 (24%), Positives = 304/672 (45%), Gaps = 55/672 (8%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHIN--G 311 E ++E L E + + LA + Y+ + ++ + L N Sbjct: 15 ERIKWLVQEDYYFPSLLEKYTEEQINQLAEKVYSYSHTWKSYISISKFFESFALKSNCGN 74 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 +E + + V++ L K A E +L++ + +TPT NSG + +L S Sbjct: 75 FILESYEDRVIVVSLFLG---DGNFKLANEIADLITRQVYQPATPTFSNSGKKRSGELVS 131 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL D + I + + L+K GG+ + + +RG GA I + + GV+P LK+ Sbjct: 132 CFLLETEDSINSINYIIATSMQLSKIGGGVAVNLSKLRGRGASIKKIDSTASGVLPVLKI 191 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 + +Q G R+G+ AYL +H D+ +F+D +K D++ R ++ IPD F+ Sbjct: 192 LENVFDYADQLGMRRGSGVAYLNIFHFDLIDFIDCKKINADEKSRIQTLSIGLIIPDKFL 251 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 + T+N + +F P+ + + + + E Y++ A +I + +++SA + ++ Sbjct: 252 QLATENKNFFIFEPNTIYQKYKVLLSDLN-MNEWYDKLAADKDI-LKKELSARNVLTRIA 309 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS-------SSEETAVCNLG 603 + FE+G+P++ + D N + P + +G + SNLCTEI +E + Sbjct: 310 QIQFESGYPYVIYIDNANKQHPLRGLGTIKMSNLCTEIFQLQESSTIGDYGDEDQIRYDV 369 Query: 604 SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMG 662 S NL + N + L I ++R L V D+ +K+N + R++GLG++ Sbjct: 370 SCNLASLNLVNLLEEKDLEKVIDISMRALTAVSDLTSIKNAPSIRKANESFRSVGLGVLN 429 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVF 721 F L ++ Y PE +E AD I+++++ AS +A+E + +F+ S + G + Sbjct: 430 FTGVLLKNNLAYDDPEVLEFADSLFSAINYYSLLASSNIAKEKNKKFHNFELSDYANGSY 489 Query: 722 PIDSIGLLAEVRDEL------AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANI 775 + E + E + S W +LK++V+ G+ N+ +AIAPT +I+ + Sbjct: 490 FDQYLNNSFEPKSEKVKELLKNIKVPSPEDWAKLKEKVQRDGLYNAYRLAIAPTQSISYL 549 Query: 776 CGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 + SI P ++ + + FL E + Sbjct: 550 QSATASIQPIISSIETRLYGNSMTYFPMPFLTKENEH----------------------- 586 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWL 894 ++ +A++ID LI+ ++ QK IDQ S LY+ + + + L +Y A Sbjct: 587 --------LYKSAYQIDQRKLIDVSATIQKHIDQGISTILYVTNNSTTRDLVKLYLYAHH 638 Query: 895 MGLKTTYYLRSR 906 GLK+ YY+R++ Sbjct: 639 KGLKSLYYVRTK 650 >gi|108760764|ref|YP_631136.1| vitamin B12-dependent ribonucleotide reductase [Myxococcus xanthus DK 1622] gi|108464644|gb|ABF89829.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Myxococcus xanthus DK 1622] Length = 930 Score = 296 bits (758), Expect = 9e-78, Method: Composition-based stats. Identities = 131/655 (20%), Positives = 239/655 (36%), Gaps = 70/655 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G ++ ++E E +LL ++P FN G PQ S+CF+ +V D++ I Sbjct: 120 GYFTRDADREAFHAELTHLLLRQKASFNSPVWFNVGVEAQPQCSACFINSVEDNMDSILT 179 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444 + ML KY G G++ + +RG + G G + G + F++ + A + GGK R Sbjct: 180 LARTEGMLFKYGSGTGSNLSTIRGSKELLAG-GGTASGPVSFMRGFDAFAGVIKSGGKTR 238 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L H D+ EF+ + + + N + + Sbjct: 239 RAAKMVILNAEHPDILEFIRCKSSEEKKAWALIEAGYDPSFNGEAYSSVFFQNSNNSVRV 298 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FMK V +A WT S + + A L Sbjct: 299 TDAFMKAVVDDATWTTRSVRD---------------------------GQPLDTYQAREL 331 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +R++ G P + F N +++SN C+E + + CNL S+ Sbjct: 332 FREISEAAHLCGDPGMQFDTTVNSWHTCSTTARINASNPCSEYMF----LDDSACNLASL 387 Query: 606 NLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL+ + FD + + + ++ + + E+ +K++H +R +GLG Sbjct: 388 NLMHFRTIDGDFDVTAFRHAVDILLMAQEIIVGNSRYPTERIEKNSHDYRPLGLGYANLG 447 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLW-DQGVFPI 723 + L +PY SP A + A + S LA+++G ++ + + GV Sbjct: 448 ALLMASGLPYDSPAGRNYAGAITSLMCGEAYAMSARLAEKQGPFAGYAKNAEPMLGVIRK 507 Query: 724 DSIGLLAEVRDELA--MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQ 780 + ++ + + WD + G RNS +APT TI + + Sbjct: 508 HRKAAYHIAPEGVSQGLFAAQKDAWDRALALGEEHGFRNSQVTVLAPTGTIGFMMDCDTT 567 Query: 781 SIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERI 837 I+P + Y K G +VN + L++ + Y D +I + Sbjct: 568 GIEPDIALIKYKKLVGGGMLKIVNQTVPLALEKLGYPQTQSQDIISYLDKQDTIEGAPHL 627 Query: 838 PDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 + + AF I M I+ Q ++ A S + + + + + ++ Y Sbjct: 628 KPEHLPVFDCAFKPAQGERSIHWMGHIQMMEACQPFLSGAISKTVNMPSDATVEDIEKAY 687 Query: 890 RQAWLMGLKTTYYLRSRS-ATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSS 943 +AW GLK R T ++ + V A P + P + Sbjct: 688 MEAWKRGLKAIAVYRDGCKRTQPLNTSKETVKDTRAAKATVAPEPAPAVQPEPRA 742 >gi|184154756|ref|YP_001843096.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus fermentum IFO 3956] gi|260663215|ref|ZP_05864107.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] gi|183226100|dbj|BAG26616.1| ribonucleoside-diphosphate reductase alpha subunit [Lactobacillus fermentum IFO 3956] gi|260552407|gb|EEX25458.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum 28-3-CHN] Length = 723 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 163/713 (22%), Positives = 286/713 (40%), Gaps = 72/713 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L +E L K+ + + + E IE L L LK Sbjct: 31 NLDQEALDDFIKENVEPNTKKFSSV-MERLNWLIENDYLEEDFIRQYTPAFLDRLYQYLK 89 Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 E+DF F ++ Y +Y + N + RVAM E+ A++ + Sbjct: 90 -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYLENY-IDRVAMNALYLANGDEQLAMDLADE 147 Query: 346 LSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L + +TPT N R + SCF DD+ I + L+K GG+G + Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINL 207 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R GA I G + GV+P +K+ D NQ G+R+GA YL +H D+ +FL Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + V ++A LFSP +V ++ + + Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGK-PFSYVDITKE 326 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ EI +K++A L ++ + E+G+P+I D N +P G + SNL Sbjct: 327 YDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPI--EGTIVMSNL 383 Query: 585 CTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 C+EI N + S NL + N + L ++R +R L ++ D Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIANLMETPDLGRSVRAMMRGLTHISD 443 Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + K N ++GLG MG L HI Y SP A+E +++ + Sbjct: 444 AESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLNYWTLV 503 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDEL 749 AS E+AQE+ +++F+ S + G + + + + W EL Sbjct: 504 ASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPDDWQEL 563 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 K+RV+ G+ N+ +A+AP + + I + S+ P + + M G +L N Sbjct: 564 KQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQEKMIGKVYYPAPYLSN 623 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + +A++ D +I++ + Q+ +D Sbjct: 624 D-------------------------------TMPYYRSAYDTDMRSVIDTYAAAQEHVD 652 Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ S+ L++ + + L+ + A G+K+ YY+R+ Sbjct: 653 QSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705 >gi|41387637|gb|AAS01681.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2] Length = 822 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 162/698 (23%), Positives = 285/698 (40%), Gaps = 67/698 (9%) Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 E V + + ++ D++ + L+ Y+ Y + + + E FF Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201 Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367 +R+A A + + K+ F+ L++ F+ STP + G Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261 Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +SC+L + + ++ GG+G + G G++ Sbjct: 262 TASCYLMDPRTNNTQDALKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484 +KV + +A N R +C YLE WH D+ L++R ++ RR ++ A W Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370 Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 DL KR ++ S L L+ +EFE YE E E Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598 I + ++ TG P+I FKD CN G + SNLCTEI + + Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485 Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VC+L SINL N QFD+D L +R A ++ +++ + EK+ +R Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 ++G+G+ GF +A + + A + EF+ A++ S E + ++ F Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S + +G D + + W+ L+ R+ + G+ N+ +A+ PTA A Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829 + VS+ P + N++ K +G+ N L+ EL+ L +E A I+ L+ + Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716 Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882 +I + + + TAF+ D LI+ S R ++DQ+QS+ L++ E + Sbjct: 717 NIQTALGNKPECHSLLKYKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLA 776 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 ++ + A+ GLKT YY + R AT+ G Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNAGVFCGDGE 814 >gi|227552560|ref|ZP_03982609.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257888212|ref|ZP_05667865.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257896900|ref|ZP_05676553.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|293378469|ref|ZP_06624632.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium PC4.1] gi|227178309|gb|EEI59281.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257824266|gb|EEV51198.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257833465|gb|EEV59886.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|292642798|gb|EFF60945.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium PC4.1] Length = 719 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 152/709 (21%), Positives = 285/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALAAFFEENVKPNTMTFPSIMEKINYLIEQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 R I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 RLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNTLKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|116333245|ref|YP_794772.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus brevis ATCC 367] gi|116098592|gb|ABJ63741.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus brevis ATCC 367] Length = 721 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 163/714 (22%), Positives = 282/714 (39%), Gaps = 82/714 (11%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L K+ L E F I E + + + L + LK + D Sbjct: 33 EALQAFLKENVIPNTKTFASL-KERFDFLIAENYIEEAVVTAYPFSFIEDLYDYLKAQ-D 90 Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F F ++ Y +Y L + + + + F RVAM ++ A + + + Sbjct: 91 FHFKSFMAAYKFYAQYALKTDDNEFYL-ENFIDRVAMNALDFGGGDQRLAHDLADEIIHQ 149 Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+ +R +L SCFL DD+ I + L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRSRRGELVSCFLIQSTDDMNTIGRTINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G G I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 GAGDPIKHIEGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIVAFLSAKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +A LFSP +V ++ +I E Sbjct: 270 NADEKIRLKTLSLGITVPDKFYELCAADADMYLFSPYDVERIYGKPFSYVDITAEYDNLV 329 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 A+ K +K+ A L + + E+G+P+I D N G + SNLC+EI Sbjct: 330 ANPDIHK--KKMKARDLETDIGKLQQESGYPYIVNIDTANR--ENPIDGRIVMSNLCSEI 385 Query: 589 TL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 CNLGS N++ ++ ++ T VR L V Sbjct: 386 MQVQTPSTVNNKQEYVKLGTDISCNLGSTNIVNLMSSP-----DFGHSVETMVRALTYVT 440 Query: 637 DI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D + + +K N IGLG MG S H+ Y S +++ +++ + Sbjct: 441 DHSDIDVVPSIQKGNQLGHTIGLGAMGLHSYFAKNHMMYGSKDSIAFTSVYFMLLNYWTL 500 Query: 696 SASVELAQE-RGAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWDE 748 AS E+A+E + +F S + G + D A+V++ + + W E Sbjct: 501 KASNEIAKERHETFHNFDKSAYADGRYFDRYTETDWRPTSAKVQELFANVWLPAPEDWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 LK V G+ + N MA+AP +I+ I + S+ P + + G +L Sbjct: 561 LKTAVMQDGLYHQNRMAVAPNGSISYINDTTASLHPIINRIEERQEKKIGKIYYPAPYLS 620 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ + +A++ D +I+ + QK + Sbjct: 621 ND-------------------------------TMPYYKSAYDTDMRRVIDVYAAAQKHV 649 Query: 868 DQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGMSLTLFMRSTIPVGLYEWKDGRTDKMTTRDLSILRNYAFRKGIKSLYYVRT 703 >gi|291326471|ref|ZP_06124645.2| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] gi|291314338|gb|EFE54791.1| ribonucleoside-diphosphate reductase, alpha subunit [Providencia rettgeri DSM 1131] Length = 710 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 180/739 (24%), Positives = 300/739 (40%), Gaps = 83/739 (11%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 SD++ + + L + E R +K +E +++ L E Sbjct: 7 ISDVDYHALNAMLNLYDNE-------GRIQFDK-DKEAAHHYFRQHVNQNTVFFHDL-KE 57 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSR 313 ++E + E + L + +LG Y Y L +G R Sbjct: 58 KLDFLVQENYYENSVLEQYDFEFIKALFKQAYAHKFRFQTFLGAFKYYTSYTLKTFDGKR 117 Query: 314 I-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 E + VA+ LA E A + + + + F +TPT N G + +L SC Sbjct: 118 YLERYEDRVCMVALTLAQG---SESLAKLYVDEIITGRFQPATPTFLNCGKKQRGELISC 174 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I ++ L+K GG+ T +R GA I +S GV+P +K+ Sbjct: 175 FLLRIEDNMESIGRSVNSALQLSKRGGGVAFLMTNLREQGAPIKLIENQSSGVVPVMKML 234 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 235 EDAFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFQ 294 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE--NYERQADRGEIKVFRKISAVALWRKM 549 N LFSP D+ +YG Y + IK ++ I+A ++ + Sbjct: 295 LAKDNQDMYLFSP---YDIERIYGVPMSEISVTDKYHEMVNNKAIKKYK-INAREFFQTL 350 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 351 AEIQFESGYPYILFEDTANRANPI--AGRINMSNLCSEILQVNRPSVYEDDLSYQQIGKD 408 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAI 656 CNLGS+N+ D A +I AVR L V D+ + ++ + N AI Sbjct: 409 ISCNLGSMNIAKT-----MDSPDFAQSIAAAVRALSAVSDMSDIRSVPSIAEGNRQSHAI 463 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715 GLG M L HI Y S EA++ + ++++A+ S +LA ER + F+ S Sbjct: 464 GLGQMNLHGYLAREHIYYGSEEALDFTNIYFYAVTYYALKTSNQLAIERKTAFVGFEHST 523 Query: 716 WDQGVFPIDSIGLLA--------EVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + G + I + E+ + +R W LK+ V T G+ N N AI Sbjct: 524 YASGDYFDKYINNIWLPKTQTVQELFRRSGIEIPTREDWQALKQSVITYGIYNQNLQAIP 583 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 PT +I+ I + SI P + ++ G F+ N Sbjct: 584 PTGSISYINNSTSSIHPIVSRIEIRKEGKIGRVYYPAPFMTN------------------ 625 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKL 885 + + + A++I P +I++ + + +DQ SL L+ D+ + + + Sbjct: 626 -------------ENLEYYQDAYQIGPEKIIDTYAMATQHVDQGLSLTLFFKDDATTRDI 672 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + AW G+KT YY+R Sbjct: 673 NRAQIYAWRKGIKTLYYIR 691 >gi|312869728|ref|ZP_07729875.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus oris PB013-T2-3] gi|311094777|gb|EFQ53074.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus oris PB013-T2-3] Length = 723 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 158/709 (22%), Positives = 288/709 (40%), Gaps = 72/709 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L + + + L F + + L L + LK + D Sbjct: 35 EALADFIAQNVRPNTKQFASLTDR-FQWLEDNDYIEEGFVDKYSPAFLTKLYDYLKAQ-D 92 Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F F ++ Y +Y L + + RVAM E+ A++ + + Sbjct: 93 FHFHSFMAAYKFYAQYALRTDDKEYYLENY-IDRVAMNALYLADGDEELAMDLADEIIHQ 151 Query: 350 HFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N R + SCF DD+ I + L+K GG+G + + +R Sbjct: 152 RYQPATPTFLNVGRKRRGEFVSCFAIQATDDMNTIGRTINSALQLSKIGGGVGINLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G + GV+P +K+ D+ NQ G+R+GA YL +H D+ EFL +K Sbjct: 212 EAGAPIKKIKGAASGVVPVMKLLEDSFSYSNQLGQRQGAGVVYLSVFHPDIIEFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V ++A LFSP +V ++ + + Y+ Sbjct: 272 NADEKIRLKTLSLGITVPDKFYELVEKDADMYLFSPYDVERIYGK-PFSYVDITKEYDNL 330 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 EI+ +K++A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 VANDEIRK-KKVNARDLEDEISKLQQESGYPYIINIDTVNRANPI--DGKIVMSNLCSEI 387 Query: 589 TLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC- 640 + S NL + N D ++R +R L ++ D+ Sbjct: 388 AQVQVPSKVADDQSYETLGTDISCNLGSTNIANMMDSPDFGRSVRAMMRGLTHISDVENL 447 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + K+ N ++GLG MG S L HI Y SP A+E +++ ++ AS E Sbjct: 448 TVVPSIKRGNALAHSVGLGAMGLHSYLAKNHIQYGSPVAIEFTGVYFMLLNYWSLVASNE 507 Query: 701 LAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRV 753 +A+E + + +F S + G + + ++ + W LK++V Sbjct: 508 IAKERQETFHNFDKSSYADGSYFDKYTTKDWGPQSDVVKDLFHGIFIPGPADWAALKEKV 567 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812 G+ N +A+AP + + I + S+ P + + M G +L N+ Sbjct: 568 MQDGLYNEYRLAVAPNGSTSYINDSTASLTPIINRVEERQEKMIGKIYYPAPYLSND--- 624 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +A++ID +I++ + Q+ +DQ+ S Sbjct: 625 ----------------------------TMPYYRSAYDIDMRKVIDTYAAAQQHVDQSMS 656 Query: 873 LNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 L L++ ++ + + L+ + A+ G+K+ YY+R+ Sbjct: 657 LTLFMRSTIPEGLYEWKNGRTNKMTTRDLNILRHYAYQKGIKSIYYIRT 705 >gi|315223182|ref|ZP_07865043.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus anginosus F0211] gi|315187614|gb|EFU21368.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus anginosus F0211] Length = 719 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 163/722 (22%), Positives = 289/722 (40%), Gaps = 85/722 (11%) Query: 223 FLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLA 282 LL K +E L +K+ + + + + E ++ + ++ + LA Sbjct: 26 ILLHK-DKEALEAFFKENVEPNTKKFSSITKKIHYLIQENYLEKEFIQLYSPEY-IEELA 83 Query: 283 NDLKYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE 341 + + +E+DF F ++ Y++Y L N + ++ RV E A + Sbjct: 84 SFI-HEQDFHFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFADGDEAIAKD 141 Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 N + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+ Sbjct: 142 IANEIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGV 201 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ Sbjct: 202 GISLSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDII 261 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 FL +K D++ R ++ IPD F + +N LFSP + + + + Sbjct: 262 AFLSTKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSIEREYGV-PFAYID 320 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E Y +I + I A L ++ + E+G+P++ D N +P G + Sbjct: 321 ITEKYNELVANPKISKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKII 377 Query: 581 SSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 SNLC+EI CNLGS N++ + +IRT Sbjct: 378 MSNLCSEILQVQEPSLLNDAQEFVRLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTM 432 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 R L V D + + N GLG MG S L I Y S E+VE Sbjct: 433 TRALTFVTDSSHIKAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYF 492 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAM 738 +++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 493 MLMNYWTLVESNNIARERGMTFHNFEKSDYANGTYFDKYLTGEFVPQSDRVKELFTGIFI 552 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSG 797 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 553 PSA--EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIG 610 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 + + + +A+++D +I Sbjct: 611 KIYYP-------------------------------AAGLSTETIPYYTSAYDMDMRKVI 639 Query: 858 ESASRRQKWIDQAQSLNLYLDE--------------PSGKKLDFIYRQAWLMGLKTTYYL 903 + + + +DQ SL L++ + + L + A+ G+K+ YY+ Sbjct: 640 DVYAAATEHVDQGLSLTLFMRSDIPQGLYEWKTECKQTTRDLSILRNYAFNKGIKSIYYV 699 Query: 904 RS 905 R+ Sbjct: 700 RT 701 >gi|299782856|gb|ADJ40854.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus fermentum CECT 5716] Length = 723 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 163/713 (22%), Positives = 286/713 (40%), Gaps = 72/713 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L +E L K+ + + + E IE L L LK Sbjct: 31 NLDQEALDDFIKENVEPNTKKFSSV-MERLNWLIENDYLEEDFIRQYTPAFLDRLYQYLK 89 Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 E+DF F ++ Y +Y + N + RVAM E+ A++ + Sbjct: 90 -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYLENY-IDRVAMNALYLANGDEQLAMDLADE 147 Query: 346 LSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L + +TPT N R + SCF DD+ I + L+K GG+G + Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGRTINSALQLSKIGGGVGINL 207 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R GA I G + GV+P +K+ D NQ G+R+GA YL +H D+ +FL Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + V ++A LFSP +V ++ + + Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGK-PFSYVDITKE 326 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ EI +K++A L ++ + E+G+P+I D N +P G + SNL Sbjct: 327 YDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPI--EGTIVMSNL 383 Query: 585 CTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 C+EI N + S NL + N + L ++R +R L ++ D Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIANLMETPDLGRSVRAMMRGLTHISD 443 Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + K N ++GLG MG L HI Y SP A+E +++ + Sbjct: 444 AESLTVVPSIKHGNDLSHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLNYWTLV 503 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDEL 749 AS E+AQE+ +++F+ S + G + + + + W EL Sbjct: 504 ASNEIAQEKGEKFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPDDWQEL 563 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 K+RV+ G+ N+ +A+AP + + I + S+ P + + M G +L N Sbjct: 564 KQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQEKMIGKVYYPAPYLSN 623 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + +A++ D +I++ + Q+ +D Sbjct: 624 D-------------------------------TMPYYRSAYDTDMRSVIDTYAAAQEHVD 652 Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ S+ L++ + + L+ + A G+K+ YY+R+ Sbjct: 653 QSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705 >gi|227514023|ref|ZP_03944072.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227087609|gb|EEI22921.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] Length = 723 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 163/713 (22%), Positives = 286/713 (40%), Gaps = 72/713 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L +E L K+ + + + E IE L L LK Sbjct: 31 NLDQEALDDFIKENVEPNTKKFSSV-MERLNWLIENDYLEEDFIRQYTPAFLDRLYQYLK 89 Query: 287 YERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 E+DF F ++ Y +Y + N + RVAM E+ A++ + Sbjct: 90 -EQDFHFHSFMAAYKFYAQYAMRTNDKEYYLENY-IDRVAMNALYLANGDEQLAMDLADE 147 Query: 346 LSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L + +TPT N R + SCF DD+ I + L+K GG+G + Sbjct: 148 LIHQRYQPATPTFLNVGRKRRGEFVSCFEIQATDDMNTIGQTINSALQLSKIGGGVGINL 207 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 +R GA I G + GV+P +K+ D NQ G+R+GA YL +H D+ +FL Sbjct: 208 NNLREAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIIDFLG 267 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + V ++A LFSP +V ++ + + Sbjct: 268 AKKENADEKVRLKTLSLGVTVPDKFYQLVEEDAPMYLFSPYDVERIYGK-PFSYVDITKE 326 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ EI +K++A L ++ + E+G+P+I D N +P G + SNL Sbjct: 327 YDNLVANPEITK-KKVNARELEDEISKLQQESGYPYIVNVDTVNKANPI--EGTIVMSNL 383 Query: 585 CTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 C+EI N + S NL + N + L ++R +R L ++ D Sbjct: 384 CSEIAQVQIPSRVNDDQTYETLGTDVSCNLGSTNIANLMETPDLGRSVRAMMRGLTHISD 443 Query: 638 IN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + K N ++GLG MG L HI Y SP A+E +++ + Sbjct: 444 AESLTVVPSIKHGNDLFHSVGLGAMGLHGFLAKHHIMYGSPVALEFTSVYFMLLNYWTLV 503 Query: 697 ASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR------TSRLPWDEL 749 AS E+AQE+ +++F+ S + G + + + + W EL Sbjct: 504 ASNEIAQEKGENFANFERSAYADGSYFDKYLTKDWGPKSAAVKELFAGFFIPTPDDWQEL 563 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 K+RV+ G+ N+ +A+AP + + I + S+ P + + M G +L N Sbjct: 564 KQRVQESGLYNAYRLAVAPNGSTSYIGDSTSSLHPIINRIEERQEKMIGKVYYPAPYLSN 623 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + +A++ D +I++ + Q+ +D Sbjct: 624 D-------------------------------TMPYYRSAYDTDMRSVIDTYAAAQEHVD 652 Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 Q+ S+ L++ + + L+ + A G+K+ YY+R+ Sbjct: 653 QSLSMTLFMRSTIPAGMYEWKDGRTEKMTTRDLNILRHYAHQKGIKSIYYIRT 705 >gi|293570829|ref|ZP_06681876.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] gi|291609097|gb|EFF38372.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] Length = 719 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALAAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|257885401|ref|ZP_05665054.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257821257|gb|EEV48387.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] Length = 719 Score = 296 bits (758), Expect = 1e-77, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPAAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|323341318|ref|ZP_08081562.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus ruminis ATCC 25644] gi|323091195|gb|EFZ33823.1| ribonuceloside diphosphate reductase, subunit alpha [Lactobacillus ruminis ATCC 25644] Length = 702 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 163/727 (22%), Positives = 282/727 (38%), Gaps = 85/727 (11%) Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 R L+K + L + K + + E+ +E G + E + Sbjct: 3 EAGRIRLDK-DQAALKLFLEDEVKPKIKRFEKKH-EHVKWMVENGYYDEEVFERYTAEFI 60 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 L L+ ++ Y +Y + N +I + + F RV E+ Sbjct: 61 DGLDERLRKAGFRFRTFMSAYKFYAQYAMKTNDQKIWL-EDFCDRVLACALTFADGDEEL 119 Query: 339 AVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A + F +TP+ N+ R + SCFL DD+ I + L++ Sbjct: 120 AEMIGEEIVHQRFQPATPSFLNAGRKRRGEFVSCFLLQTTDDMNSIGRMINSALQLSRIG 179 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+G + + +RG GA I G + GV+P +K+ D+ NQ G+R+GA YL +H Sbjct: 180 GGVGVNLSNLRGRGASIKQIKGVASGVVPVMKLLEDSFSYSNQLGQRQGAGAVYLNVFHP 239 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 DV EFL +K D++ R ++ +PD F + +N LF P V + Sbjct: 240 DVLEFLGTKKENADEKIRVKTLSLGLVVPDKFYELARKNEEMCLFEPYTVEKEYHC-PFS 298 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 + + YE+ + I+ +KISA L ++ + E+G+P+I D N G Sbjct: 299 YVDLTKEYEKMVENPRIEK-KKISARMLEEEISKLQQESGYPYIVNIDTVNA--GNPIKG 355 Query: 578 VVHSSNLCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTI 625 + SNLC+EI CNLGS N+ ++ Sbjct: 356 KIVMSNLCSEILQVQEPSVINDEQEYVKLGRDISCNLGSTNIANLMKAP-----DFGRSV 410 Query: 626 RTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIAD 684 +T V+ L V D N ++ N T AIGLG MG S L I Y S EA+E Sbjct: 411 KTMVKALTEVSDESNIKSVPSVAHGNETAHAIGLGAMGLHSFLAQNKIRYGSKEALEFVS 470 Query: 685 ESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG--------LLAEVRDE 735 +++ + AS E+A E+ + F S + G + + E+ Sbjct: 471 TYFMLLNYWTLVASNEIAIEKKQMFDGFLESGYADGSYFEEYENADSTLHFSKTKELFKG 530 Query: 736 LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SN 794 + + W L++ V G+ N N +A+APT +I+ I + S+ P + + + Sbjct: 531 IFIPSA--KDWGRLRQNVMRHGLYNQNRLAVAPTGSISYINDTTASLQPIVRVVEERQEK 588 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 G + ++ + +A+++D Sbjct: 589 KIGKIYYPAP-------------------------------GLSEETLPYYTSAYDLDMR 617 Query: 855 WLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLK 898 +I++ + QK +DQ SL L++ +E + + L + A+ +K Sbjct: 618 CVIDTYAAAQKHVDQGLSLTLFMRSKPSADLYEWKKGHKEELTTRDLTILRHYAFRKKIK 677 Query: 899 TTYYLRS 905 + YY+R+ Sbjct: 678 SIYYVRT 684 >gi|255325477|ref|ZP_05366579.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] gi|255297415|gb|EET76730.1| ribonucleoside-diphosphate reductase, alpha subunit [Corynebacterium tuberculostearicum SK141] Length = 731 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 161/675 (23%), Positives = 272/675 (40%), Gaps = 79/675 (11%) Query: 266 ARLLHESMMDFDLVYL--ANDLKYERDFAF-------EYLGLQILYDRYFLH-INGSRI- 314 L+ + D + L L D A +LG + Y L +GSR Sbjct: 81 EWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFLGAFKFFTSYALKTFDGSRFL 140 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E + RVA E+ A + + + + F +TPT N+G ++ SCFL Sbjct: 141 EGYEE---RVATTALYLAQGDEELAEKLVDGIMTGRFQPATPTFLNAGKAQRGEMVSCFL 197 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D+L I + L+K GG+ + +R GA I ++ GV+P +K+ D Sbjct: 198 LRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPIKKIENQASGVVPVMKILED 257 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 258 SFSYANQLGSRQGAGSVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFRLA 317 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N LFSP +++ + + + E Y+ I I A + + + Sbjct: 318 KENKDMHLFSPYDIAREYGVAMSDMS-ITEYYDELVANPRISHT-TIKAREFFTTLAELQ 375 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCN 601 FE+G+P+I F+D N +P G ++ SNLC+EI ++ + CN Sbjct: 376 FESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYGASGDYTTVGQDISCN 433 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ F + T+ TAVR L V D+ N + N + AIGLG Sbjct: 434 LGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPSIAHGNASMHAIGLGQ 488 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L IPY EA++ + +++HA+ AS LA E+ ++ F+ S + G Sbjct: 489 MNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEKGQRFTGFEESTYATG 548 Query: 720 VFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + I E + R W LK V G+ N+ A+ PT + Sbjct: 549 AYFDKYIDQDWAPTTEHVKQLFHEAGVQIPQREDWLRLKNLVMQDGIYNAYLQAVPPTGS 608 Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G Sbjct: 609 ISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP-------------------------- 642 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 + +D + ++ + +I++ + + +DQ SL L+ + + + ++ Sbjct: 643 -----EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTLFFTADTTTRDINKAQ 697 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 698 IYAWKAGIKTLYYIR 712 >gi|256375568|ref|YP_003099228.1| vitamin B12-dependent ribonucleotide reductase [Actinosynnema mirum DSM 43827] gi|255919871|gb|ACU35382.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Actinosynnema mirum DSM 43827] Length = 948 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 127/629 (20%), Positives = 230/629 (36%), Gaps = 28/629 (4%) Query: 324 VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT-RHPQLSSCFLTTVPDDLYG 382 V ET+ E E +L F ++P FN GT Q+S+CF+ +V D + Sbjct: 114 VKHAYFATETDAEVFEHELTWMLLHQVFSFNSPVWFNVGTASPQQVSACFILSVDDTMES 173 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG- 441 I +E ++ K G G + + +R + G + G + F++ A+ +A + G Sbjct: 174 ILNWYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGG 232 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 R+ A L+ H DVEEF+ + D R D + + Sbjct: 233 ATRRAAKMVVLDVDHPDVEEFIQTKAREEDKIRALRDAGFDMDL------GGSDIVSVQY 286 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 + + + D + + FE E R RG +V + A +L+RK+ +E P I Sbjct: 287 QNANNSVRVSDEFMRAFEGGKEFGLR--SRGTGEVIETVDAKSLFRKLAQAAWECADPGI 344 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDK 620 + N G + +SN C+E + + CNL S+NL+ + F+ D Sbjct: 345 QYDGTINDWHTTPESGRITASNPCSEYMH----LDNSSCNLASLNLMKFLGDDGSFNADL 400 Query: 621 LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAV 680 A ++ + +D I ++ R +G+G + L Y S Sbjct: 401 FARSVELIITAMDISICFADFPTPAIGETTRAFRQLGIGYANLGALLMATGHAYDSEGGR 460 Query: 681 EIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DEL 736 +A + + S ELA G Y + + E+R ++ Sbjct: 461 ALAASITSLMQAVSYRRSAELAGVVGPYDGYARNAESHKRIIRKHASANDEIRTLHANDA 520 Query: 737 AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSN 794 + W ++ G RN+ +APT TI + + I+P + + K Sbjct: 521 DTRSLATAEWQRCQEIGAVNGWRNAQASVLAPTGTIGLMMDCDTTGIEPDLALVKFKKLV 580 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATAF--- 849 G +VN + L E + + +++ G + + + + ++ A Sbjct: 581 GGGSMQIVNQTVPRALSALGYPTEQVEAIVEHIGEHGHVVDAPSLKLEHYEVFDCAMGER 640 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I PM + + Q ++ A S + + E + ++++ +Y Q W MGLK R Sbjct: 641 SITPMGHVRMMAAVQPFLSGAISKTVNMPETATVEEVEEVYYQGWKMGLKALAIYRDNCK 700 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 S KG A + Sbjct: 701 VGQPLSAGKGAKASTAAEKAPETVIEYRP 729 >gi|293553989|ref|ZP_06674591.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] gi|291601846|gb|EFF32096.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] Length = 719 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|257899643|ref|ZP_05679296.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|257837555|gb|EEV62629.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] Length = 719 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALAAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGKSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|262362561|gb|ACY59282.1| ribonucleotide-diphosphate reductase alpha subunit [Yersinia pestis D106004] Length = 583 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 151/603 (25%), Positives = 258/603 (42%), Gaps = 60/603 (9%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381 VA+ LA T + A E + S F +TPT N G + +L SCFL + D++ Sbjct: 1 MVALTLA---TGNQTLARELVEEIISGRFQPATPTFLNCGKKQRGELVSCFLLRIEDNME 57 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I ++ L+K GG+ + +R +GA I +S GVIP +K+ D NQ Sbjct: 58 SIGRSINSALQLSKRGGGVAFLLSNIREVGAPIKRIENQSSGVIPIMKMLEDAFSYANQL 117 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + N L Sbjct: 118 GARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFELAKNNEEMYL 177 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFETGHPW 560 FSP D+ +YG + + + ++ + KI A ++ + + FE+G+P+ Sbjct: 178 FSP---YDIEQVYGVPMSEISISEKYREMVDNKRIRKSKIKAREFFQILAEIQFESGYPY 234 Query: 561 ITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GSINLLAHFAN 613 + F+D N +P G ++ SNLC+EI ++ E S NL + Sbjct: 235 MMFEDTVNRANPI--KGRINMSNLCSEILQVNAPTEYHEDLSYRRIGKDISCNLGSLNIA 292 Query: 614 NQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHI 672 D +I A+R L V ++ N ++ +K N AIGLG M L + Sbjct: 293 QVMDSPDFGKSIEIAIRGLTAVSEMSNIRSVPSIEKGNQESHAIGLGQMNLHGYLARERL 352 Query: 673 PYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAE 731 Y S EA++ + +++HAI AS +LA ER + F S + G F I + Sbjct: 353 FYGSEEALDFTNIYFYTVAYHAIRASNQLAIERASHFKGFDESDYASGAFFSKYIEQSWQ 412 Query: 732 VR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSID 783 + + + ++ W L++ V G+ N N A+ PT +I+ I + SI Sbjct: 413 PKTARVQALFADAGIAIPNQQDWIALRQSVMEHGIYNQNLQAVPPTGSISYINHSTSSIH 472 Query: 784 PSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLK 842 P + ++ G ++ N+ Sbjct: 473 PIVSPIEIRKEGKIGRVYYPAPYMTND-------------------------------NL 501 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTY 901 + + A++I P +I++ + + +DQ SL L+ + + + ++ AW G+KT Y Sbjct: 502 EYYQDAYQIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINKAQIYAWKKGIKTIY 561 Query: 902 YLR 904 Y+R Sbjct: 562 YIR 564 >gi|311115216|ref|YP_003986437.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella vaginalis ATCC 14019] gi|310946710|gb|ADP39414.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella vaginalis ATCC 14019] Length = 740 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 166/745 (22%), Positives = 286/745 (38%), Gaps = 82/745 (11%) Query: 199 ETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY------ 252 +T S+ I +Y + A L + + ++ +K + Sbjct: 20 DTNTASSTAERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFAS 79 Query: 253 -PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING 311 E I + L + +LG Y Y L Sbjct: 80 THERLNYLISNYYYNGNVFGKYSSEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFD 139 Query: 312 SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSS 370 + + A+ L L + EK A+ + + + + F +TPT N G + S Sbjct: 140 GKQYLENFAQRAAAVALELAD-GDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVS 198 Query: 371 CFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKV 430 CFL + D++ I + L+K GG+ T +R LGA I +S GV+P +K+ Sbjct: 199 CFLVRLEDNMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKL 258 Query: 431 ANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFM 490 D+ NQ G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ Sbjct: 259 LEDSFSYANQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITF 318 Query: 491 KRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKM 549 + + LFSP D+ YGK F ++ +K I A + + Sbjct: 319 ELAKRKEKMALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTL 375 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEET 597 + FE+G+P+I F+D N +P G + SNLC+EI S Sbjct: 376 AEIQFESGYPYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRD 433 Query: 598 AVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAI 656 CNLGS+N+ L +++ AVR L +V + + ++ ++ N AI Sbjct: 434 ISCNLGSLNIAKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAI 487 Query: 657 GLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSL 715 GLG M L H+ Y S EA++ D +++HA AS LA ERG ++SFK S Sbjct: 488 GLGQMNLHGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSA 547 Query: 716 WDQGVFPIDSIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNS 761 + + + ++ + + W++L+ + G+ N Sbjct: 548 YAKPAGKGNYFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILRDGIYNE 607 Query: 762 NCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAM 820 A+ PT +I+ I + SI P + ++ G +++ N+ Sbjct: 608 YLQAVPPTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM--------- 658 Query: 821 ISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE- 879 + A+EI +I++ + + +DQ SL L+ + Sbjct: 659 ----------------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDT 696 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + + L+ AW G+KT YY+R Sbjct: 697 TTTRDLNKAQIYAWRKGIKTLYYIR 721 >gi|125745091|ref|YP_001033968.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 2] gi|327488428|sp|Q77MS1|RIR1_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase large subunit; AltName: Full=Ribonucleotide reductase large subunit gi|7673150|gb|AAF66774.1|AF147806_38 ribonucleotide reductase large subunit [Gallid herpesvirus 2] gi|10180744|gb|AAG14232.1|AF243438_47 UL39 ribonucleotide reductase large subunit-like protein [Gallid herpesvirus 2] gi|148806368|gb|ABR13124.1| UL39 [Gallid herpesvirus 2] gi|194346459|gb|ACF49641.1| UL39 [synthetic construct] gi|194750452|gb|ACF94929.1| UL39 [Gallid herpesvirus 2] gi|237626302|gb|ACR02825.1| UL39 [synthetic construct] Length = 822 Score = 296 bits (757), Expect = 1e-77, Method: Composition-based stats. Identities = 162/698 (23%), Positives = 285/698 (40%), Gaps = 67/698 (9%) Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 E V + + ++ D++ + L+ Y+ Y + + + E FF Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201 Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367 +R+A A + + K+ F+ L++ F+ STP + G Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261 Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +SC+L + + ++ GG+G + G G++ Sbjct: 262 TASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484 +KV + +A N R +C YLE WH D+ L++R ++ RR ++ A W Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370 Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 DL KR ++ S L L+ +EFE YE E E Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598 I + ++ TG P+I FKD CN G + SNLCTEI + + Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485 Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VC+L SINL N QFD+D L +R A ++ +++ + EK+ +R Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 ++G+G+ GF +A + + A + EF+ A++ S E + ++ F Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S + +G D + + W+ L+ R+ + G+ N+ +A+ PTA A Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829 + VS+ P + N++ K +G+ N L+ EL+ L +E A I+ L+ + Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716 Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882 +I + + + TAF+ D LI+ S R ++DQ+QS+ L++ E + Sbjct: 717 NIQTALGNKPECHSLLKYKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLA 776 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 ++ + A+ GLKT YY + R AT+ G Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNAGVFCGDGE 814 >gi|82492125|gb|ABB77922.1| ribonucleotide reductase alpha chain [Environmental halophage 1 AAJ-2005] Length = 569 Score = 296 bits (757), Expect = 2e-77, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 241/590 (40%), Gaps = 112/590 (18%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A FY +S + ++P N G SCF + + D+ + E + K Sbjct: 61 FADRFYEYMSRGFYSLASPVWSNFGLDRGLPISCFGSYIEDNTESLLYTQAEVGEMTKLG 120 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG + +R G+ I NGKS G F ++ + ++QGG R+G Y++ H Sbjct: 121 GGTSGYFGNLRPRGSSI-TNNGKSNGSYSFTELFDTEISVISQGGTRRGQFAGYIDVEHD 179 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 D++E+L+++ + + +M I D + + + Sbjct: 180 DLDEWLNIKT----EGDKIQNMYYGVIIGDDWFQSMIDGDE------------------- 216 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 W ++ G P+I F+D N PQ + Sbjct: 217 -----------------------DKRETWANIVETRINIGVPYIIFRDNMNGGKPQVYKD 253 Query: 578 ---VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 +++SNLCTEI+L ++ E+ VC L S+N L FD K + T R LD Sbjct: 254 KNYQINASNLCTEISLPATPTESFVCCLSSMNAL------HFDEWKDTDAVETLTRFLDA 307 Query: 635 VIDINCHT-----------IEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 V++ +++A + HRAIG+G++G+ S L IP+ S +A+ Sbjct: 308 VMEEFIQEAQGNEYLGVDLMQRAVRFAERHRAIGIGVLGWHSYLQSKMIPFDSMDAMREN 367 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR 743 ++ I + + S +A E G +G Sbjct: 368 EKIFSMIEERSYAESERMADEFGEPEVLEG------------------------------ 397 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVV 802 G RN+ M++APT + + I G VS SI+P N +V+ T Sbjct: 398 ------------YGRRNATTMSVAPTKSSSVILGQVSASIEPLKSNYFVRDGAKLKSTQK 445 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 N FL LK R + +DGS+ +++ + D K++ T EI M +I A++ Sbjct: 446 NRFLEAILKDRGEDTRDTWDSIGRNDGSVQHLDCLDDHEKEVFKTFSEIPQMAIINQAAQ 505 Query: 863 RQKWIDQAQSLNLYLD--EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 RQ IDQ+QS+N+ ++ E S K+++ +Y +AW G+K+ YY S +A Sbjct: 506 RQDHIDQSQSVNISINPDEVSVKEMNQLYIEAWRKGVKSLYYQHSVNAAQ 555 >gi|328958550|ref|YP_004375936.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] gi|328674874|gb|AEB30920.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] Length = 732 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 165/686 (24%), Positives = 279/686 (40%), Gaps = 74/686 (10%) Query: 257 CRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLHINGSR 313 YI+ V + +D ++ K Y +F F ++G Y +Y L N Sbjct: 66 NNYIDLEVLTLYKQDESDQYDFAFIKKIFKQIYAANFKFKSFMGAYKFYSQYALKTNDHS 125 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + Q R+A A++ L S + +TPT N+G + ++ SCF Sbjct: 126 KYLEQFE-DRIAFNALYLGNGDRTLAIQLAEELISQRYQPATPTFLNAGKKKRGEMISCF 184 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D + I + L++ GG+G + + +R G I S GV+P +K+ Sbjct: 185 LIDIADSMLSIGRGVNSALQLSRIGGGVGVNLSNIRSAGDPIKDIANASSGVLPVMKLLE 244 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D NQ G+R GA YL +H D+ FL +K D++ R ++ +PD + + Sbjct: 245 DAFSYSNQLGQRNGAGVVYLNVFHPDILGFLSTKKENADEKIRVKTLSLGLVVPDKYYEL 304 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 + N LFSP V YG F + E + + + I+A L +++ Sbjct: 305 IKTNKPMYLFSPYSVEKE---YGIPFSYIDLSAEYDNMVENLNIKKTQINARELEQEISR 361 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNL-------GS 604 + E+G+P+I D N +P G + SNLC+EI S Sbjct: 362 LQQESGYPYILNIDTANNTNPV--DGKIIMSNLCSEILQPQEPSTLNADLSYEQTGTDIS 419 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCH-TIEKAKKSNHTHRAIGLGLMGF 663 NL + N A ++ AVR L V D + + K N + IGLG MG Sbjct: 420 CNLGSSNIMNMLQSPNFAKSVNLAVRALTTVTDSSNVLEVPTISKGNSMYHTIGLGAMGL 479 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722 +AL L I Y S E++E + +++H++ AS E+AQER + F+ S + G + Sbjct: 480 HTALALHQIEYGSKESIEFTEAYFLALNYHSLIASNEIAQERGETFFGFEKSKYADGSYF 539 Query: 723 IDSIG----LLAEVRDELAMN--RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 + L+ E + +N + W +LK++V G+ + N +A+AP +I+ + Sbjct: 540 NPYLESEFTLVNEKVKNIFVNIQLPTVADWKDLKEKVFQHGLYHRNRLAVAPNGSISYVN 599 Query: 777 GVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIE 835 S S+ P Q + + G FL N Sbjct: 600 ETSASLHPITQLIENRQEKKVGSIFYPAPFLSN--------------------------- 632 Query: 836 RIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--------------- 880 + + +A++ D +I+ + QK IDQ SL L++ Sbjct: 633 ----ETLPYYKSAYDYDQRKIIDIYAAAQKHIDQGMSLTLFMRSTLPENIYEWKTGVSSK 688 Query: 881 -SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + L+ + AW G+K+ YY+R+ Sbjct: 689 LTTRDLNRLRNYAWTKGIKSLYYIRT 714 >gi|311741269|ref|ZP_07715093.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] gi|311303439|gb|EFQ79518.1| ribonucleotide-diphosphate reductase subunit alpha [Corynebacterium pseudogenitalium ATCC 33035] Length = 731 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 161/675 (23%), Positives = 273/675 (40%), Gaps = 79/675 (11%) Query: 266 ARLLHESMMDFDLVYL--ANDLKYERDFAF-------EYLGLQILYDRYFLH-INGSRI- 314 L+ + D + L L D A +LG + Y L +GSR Sbjct: 81 EWLVDNEYYERDFLELYDDAFLCAMYDRAHRVKHQFRTFLGAFKFFTSYALKTFDGSRFL 140 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E + RVA E+ A + + + + F +TPT N+G ++ SCFL Sbjct: 141 EGYEE---RVATTALYLAQGDEELAEKLVDDIMTGRFQPATPTFLNAGKAQRGEMVSCFL 197 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D+L I + L+K GG+ + +R GA I ++ GV+P +K+ D Sbjct: 198 LRIEDNLESIGRCVNSALQLSKRGGGVALLLSNLRESGAPIKKIENQASGVVPVMKILED 257 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 258 SFSYANQLGSRQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFRLA 317 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N LFSP +++ + + + E Y+ I I A + + + Sbjct: 318 KENKDMHLFSPYDIAREYGVAMSDMS-ITEYYDELVANPRISHT-TIKAREFFTTLAELQ 375 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCN 601 FE+G+P+I F+D N +P G ++ SNLC+EI ++ + CN Sbjct: 376 FESGYPYILFEDTVNRANPL--KGHINMSNLCSEILQVNTPSTYGASGDYTTVGQDISCN 433 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ F + T+ TAVR L V D+ N + N + AIGLG Sbjct: 434 LGSLNIAKAFESP-----DFGETVETAVRALTKVSDLTNIEAVPSIAHGNASMHAIGLGQ 488 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L IPY EA++ + +++HA+ AS LA E+ ++ F+ S + G Sbjct: 489 MNLHGFLASQRIPYGCAEALDFTNIYFLTVTYHALRASHALAVEKGQRFTGFEESTYATG 548 Query: 720 VFPIDSIGLLAEV--------RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + I E + R W LK +V G+ N+ A+ PT + Sbjct: 549 AYFDKYIDQDWAPATEHVKQLFHEAGVQIPQREDWLRLKNQVMQDGIYNAYLQAVPPTGS 608 Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G Sbjct: 609 ISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP-------------------------- 642 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 + +D + ++ + +I++ + + +DQ SL L+ + + + ++ Sbjct: 643 -----EMTNDNLEYFDDSYAVGYEKIIDTYAMATQHVDQGLSLTLFFTADTTTRDINKAQ 697 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 698 IYAWKAGIKTLYYIR 712 >gi|269123321|ref|YP_003305898.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptobacillus moniliformis DSM 12112] gi|268314647|gb|ACZ01021.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptobacillus moniliformis DSM 12112] Length = 694 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 158/685 (23%), Positives = 288/685 (42%), Gaps = 62/685 (9%) Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK--YERDFAF-EYLGLQILYDRY 305 ++ I+ ++ + + K Y + F F Y+ Y Y Sbjct: 39 NTVFFHNLKEKIDYLIEKDYYINFYDMYSFEEINEVFKFVYSKKFRFKSYMAASKFYQSY 98 Query: 306 --FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 +E + VA+ L +++A+++ +L + + +TPT N+G Sbjct: 99 ALMDDTGEKILERYEDRISIVALYLGQG---NKEKALKYAKMLINQEYQPATPTFLNAGK 155 Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 + +L SCFL + D+L GI A + L+ GG+ + + +R G I G G++ Sbjct: 156 KRSGELVSCFLDEIGDNLSGIGYAFESAMKLSSIGGGVAFNISKLRARGEAIKGVEGRAS 215 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P +K+ D NQ G+R GA YL +H D+ EFLD +K D++ R ++ Sbjct: 216 GVLPIMKILEDIFSYANQLGQRPGAGAVYLNVFHSDILEFLDTKKINVDEKIRIKSLSIG 275 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 I D FM+ + + F P V + Y + + E YE+ ++K +KI+ Sbjct: 276 VIISDKFMELASADLPCYTFYPHSVYLEYGKYLDDLD-MNEWYEKLVANPKVKK-KKINV 333 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSE 595 K+ E+G+P++ FKD N + +G V +NLCTEI N+ E Sbjct: 334 REFLVKVAQTQKESGYPYLFFKDNANREHALKEIGDVKFTNLCTEIMQLTEVSDINNYYE 393 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654 E + S NL + + + ++ A+ L V D+ N + KK+N Sbjct: 394 EDNIRRGISCNLGSVNIAKVMENKSIKEVVKNAIDSLTTVSDLTNISIVPSIKKANDELS 453 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 ++GLG M L I Y S EA++ + ++++++ S+E+A+ER ++ F+ Sbjct: 454 SVGLGAMNLHGYLAKNMIQYESREALDFCNVFFMMMNYYSLERSMEIAKERSRSFLGFEK 513 Query: 714 SLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 S + G + I + E+ + + + W +LK+ V G+ N+ MA Sbjct: 514 SEYANGKYFEKYITKEYMPVTDRVKELFEGIHIPGV--EEWKKLKEDVMKYGVYNAYRMA 571 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 IAP + + I + S+ P + V+ +L + Sbjct: 572 IAPNQSTSYIMNATASVMPIVDKVEVREYGDSTTFYPMPYLNYD---------------- 615 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKK 884 + +A+++D +++ S Q+ +DQ S L+ + + Sbjct: 616 ---------------NFFYYKSAYDMDQKNILKLISVIQRHVDQGISTILFTKSNDTTRD 660 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSAT 909 L +Y A +GLK+ YY R+R +T Sbjct: 661 LSKLYILAHKLGLKSLYYTRTRKST 685 >gi|146318861|ref|YP_001198573.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus suis 05ZYH33] gi|146321069|ref|YP_001200780.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus suis 98HAH33] gi|253751942|ref|YP_003025083.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis SC84] gi|253753765|ref|YP_003026906.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis P1/7] gi|253755357|ref|YP_003028497.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis BM407] gi|145689667|gb|ABP90173.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis 05ZYH33] gi|145691875|gb|ABP92380.1| Ribonucleotide reductase, alpha subunit [Streptococcus suis 98HAH33] gi|251816231|emb|CAZ51858.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis SC84] gi|251817821|emb|CAZ55574.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis BM407] gi|251820011|emb|CAR46181.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus suis P1/7] gi|292558518|gb|ADE31519.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus suis GZ1] gi|319758304|gb|ADV70246.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus suis JS14] Length = 719 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 160/718 (22%), Positives = 291/718 (40%), Gaps = 84/718 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E + + + + + + E ++ L + +F ++ + L Sbjct: 28 LHKDQEAVKAFFTENVLPNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEF-IIKIDQFL 86 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 K + ++ Y++Y L N + ++ RV E+ A+ N Sbjct: 87 KDQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGDEELALNLANE 145 Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MIHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + +N LFSP V + + + E Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGV-PYSYLDITEK 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + I A L ++ + E+G+P++ D N +P G + SNL Sbjct: 325 YDELVANPRIRKTK-IKARDLETEISKLQQESGYPYVINIDTANRSNPV--DGKIIMSNL 381 Query: 585 CTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI S CNLGS N++ + ++RT R L Sbjct: 382 CSEILQVQTPSILNDSQEYLSMGTDVSCNLGSTNIVNLMKSP-----DFGRSVRTMTRAL 436 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + + N +IGLG MG S L I Y S AVE + ++ Sbjct: 437 TYVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLN 496 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 + + S +A+ER + +F S + G + + + E+ + + + S Sbjct: 497 YWTLVESNNIARERKATFHNFDKSKYADGTYFDKYVTGDYQPQSDRVKELFEGIFIP--S 554 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801 W EL+++V G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 555 GQDWAELREKVMADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 L E + + +A+++D +I+ + Sbjct: 615 P---------AAGLTTETI----------------------PFYKSAYDMDMRKVIDVYA 643 Query: 862 RRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 644 AATEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|703072|gb|AAA80556.1| ribonucleotide reductase large subunit [Gallid herpesvirus 2] Length = 820 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 165/684 (24%), Positives = 272/684 (39%), Gaps = 76/684 (11%) Query: 285 LKYERDF-----AFEYLGLQIL--YDRYFLHINGSRIEMPQAFFMR-------------- 323 + R + + LGLQ Y+ Y + + G + E FF+R Sbjct: 156 MDMLRFYGNIYPQLKRLGLQSALKYEEYLVELEGGKKESLCQFFIRLAAAAATEALHRKP 215 Query: 324 -VAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL-- 380 +A + F+ L+ F+ STP + G +SC+L Sbjct: 216 LIASLTNGSANWRTAFT-SFFLALAHQLFVPSTPCMLFLGREGYSTASCYLMDPRTTTTQ 274 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 I + GG+G V + G++ LK+ + VA N Sbjct: 275 DTIKVITNDVVPHLLARGGIGISLQHV-----------NQKSGLMHVLKLIDSLIVATNV 323 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV------ 493 R VC YLE WH D+ L +R ++ RR ++ A W DL KR Sbjct: 324 NESRPTGVCVYLEPWHSDIMSALTMRGMMAAEESRRCDNVFLALWACDLLFKRYLRYVNG 383 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N WTLF S L LYG +FE+ YE E+ E +I + ++ Sbjct: 384 EKNVMWTLFD-SRASILSKLYGDKFEVEYERLEK-----EGIGVAQIPIRDMMFAIIKSA 437 Query: 554 FETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA 612 TG P+I FKD CN G + SNLCTEI ++ VC L SINL Sbjct: 438 ASTGSPFILFKDACNRHYITDTQGDAIAGSNLCTEIIQKTNESTNGVCTLASINLARCVR 497 Query: 613 NNQFDYDK----LASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 + + L R A + ++D + K++ +R+IG+G+ GF +A+ Sbjct: 498 RVNVNVNSILMPLGMPFRLATVFTNAIMDGSDVPTVKSQSGRDRNRSIGIGVQGFHTAML 557 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIG 727 L + + + E + A++ S E + + F S + QG D Sbjct: 558 SLGLDLEDGAVRALNKQIFELMLLEAMTVSCEFCERGLPPFPDFSDSYYAQGRLHFDGWD 617 Query: 728 LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQ 787 ++ T+ W L+ R+ + G+ N+ +A+ PTA A + VS+ P + Sbjct: 618 ---------SVELTAPEEWGVLRGRIMSSGLYNAQFIALMPTAASAQVTEVSEGFAPLFS 668 Query: 788 NLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI-----GNIERIPDDLK 842 N++ K +G+ NS L+ +++Q +E S + P+ + Sbjct: 669 NMFSKVTSAGELLRPNSQLMRDVRQIYPDNEQRRLSAITALESTAWCVKEALGDRPECTR 728 Query: 843 KI-HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMG 896 + + TAFE D LI+ + R ++DQ+QS+ L++ E + ++ + A+ G Sbjct: 729 LLKYKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTETADGTLLASRVMNLLLHAYKAG 788 Query: 897 LKT-TYYLRSRSATSVEKSTLKGV 919 LKT YY + R AT+ + G Sbjct: 789 LKTGMYYCKIRKATNTGIFSGDGE 812 >gi|76818467|ref|YP_337183.1| ribonucleotide reductase, coenzyme B12-dependent [Burkholderia pseudomallei 1710b] gi|76582940|gb|ABA52414.1| Ribonucleotide reductase, Coenzyme B12-dependent [Burkholderia pseudomallei 1710b] Length = 871 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 41 QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 96 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 97 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 156 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 157 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 216 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 217 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 265 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 266 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 322 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+ LA RT VR LD+V Sbjct: 323 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 378 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S + + A + A Sbjct: 379 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 438 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA++ F + + L + +++++ ++ Sbjct: 439 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 479 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 480 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 528 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G +G + +A ++ + + Q +ID + S Sbjct: 529 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 581 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 582 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 636 >gi|167905562|ref|ZP_02492767.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei NCTC 13177] gi|254185407|ref|ZP_04891995.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1655] gi|184209642|gb|EDU06685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1655] Length = 844 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+ LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S + + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA++ F + + L + +++++ ++ Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G +G + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609 >gi|53721516|ref|YP_110501.1| ribonucleotide reductase protein [Burkholderia pseudomallei K96243] gi|126443851|ref|YP_001061740.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 668] gi|134283051|ref|ZP_01769753.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 305] gi|167741547|ref|ZP_02414321.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 14] gi|167818742|ref|ZP_02450422.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 91] gi|167827116|ref|ZP_02458587.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 9] gi|167848614|ref|ZP_02474122.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei B7210] gi|167913872|ref|ZP_02500963.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 112] gi|167921786|ref|ZP_02508877.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei BCC215] gi|217424572|ref|ZP_03456070.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 576] gi|226196550|ref|ZP_03792131.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pakistan 9] gi|254187293|ref|ZP_04893807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pasteur 52237] gi|254198951|ref|ZP_04905369.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei S13] gi|254264773|ref|ZP_04955638.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1710a] gi|254296714|ref|ZP_04964168.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 406e] gi|52211930|emb|CAH37935.1| putative ribonucleotide reductase protein [Burkholderia pseudomallei K96243] gi|126223342|gb|ABN86847.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 668] gi|134245699|gb|EBA45791.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 305] gi|157806658|gb|EDO83828.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 406e] gi|157934975|gb|EDO90645.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pasteur 52237] gi|169657123|gb|EDS88517.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei S13] gi|217392496|gb|EEC32520.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 576] gi|225931426|gb|EEH27432.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei Pakistan 9] gi|254215775|gb|EET05160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1710a] Length = 844 Score = 295 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+ LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S + + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA++ F + + L + +++++ ++ Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G +G + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609 >gi|167897188|ref|ZP_02484590.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 7894] Length = 844 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+ LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFAIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S + + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA++ F + + L + +++++ ++ Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G +G + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609 >gi|104304004|gb|ABF72279.1| HSV-1 UL39-like protein [Gallid herpesvirus 2] Length = 822 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 163/698 (23%), Positives = 285/698 (40%), Gaps = 67/698 (9%) Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 E V + + ++ D++ + L+ Y+ Y + + + E FF Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201 Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367 +R+A A + + K+ F+ L++ F+ STP + G Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261 Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +SC+L + + ++ GG+G + G G++ Sbjct: 262 TASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484 +KV + +A N R +C YLE WH D+ L++R ++ RR ++ A W Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370 Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 DL KR ++ S L L+ +EFE YE E E Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598 I + ++ TG P+I FKD CN G + SNLCTEI + + Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485 Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VC+L SINL N QFD+D L +R A ++ +++ + EK+ +R Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 ++G+G+ GF +A + + A + EF+ A++ S E + ++ F Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S + +G D + + W+ L+ R+ + G+ N+ +A+ PTA A Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829 + VS+ P + N++ K +G+ N L+ EL+ L +E A I+ L+ + Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716 Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882 +I D + + TAF+ D LI+ S R ++DQ+QS+ L++ E + Sbjct: 717 NIQTALGNKPDCHSLLKYKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLA 776 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 ++ + A+ GLKT YY + R AT+ G Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNTGVFCGDGE 814 >gi|237509777|ref|ZP_04522492.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei MSHR346] gi|235001982|gb|EEP51406.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei MSHR346] Length = 844 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 140/655 (21%), Positives = 254/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQGLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+ LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S + + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA+ERGA++ F + + L + +++++ ++ Sbjct: 412 RASVELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G +G + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609 >gi|329922843|ref|ZP_08278359.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. HGF5] gi|328941616|gb|EGG37901.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Paenibacillus sp. HGF5] Length = 718 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 128/560 (22%), Positives = 230/560 (41%), Gaps = 56/560 (10%) Query: 390 NAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVC 449 + GG+G + + +R A + G NG S G + + + + T + QGG R+GA+ Sbjct: 1 MTEIMARGGGVGINLSSLRPRRAIVRGVNGSSSGAVSWGGLFSYTTGLIEQGGSRRGALM 60 Query: 450 AYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSD 509 + WH DVE+F+ +++ G + + N + + + FMK V ++ W L PD Sbjct: 61 LMMNDWHPDVEDFITVKQTMG----QVTNANLSVCVSNDFMKAVKEDLDWELVFPDTTDP 116 Query: 510 LHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNI 569 +D ++ R I ++ + A +W ++ +++ P + F + N Sbjct: 117 DYDELWDGDLDKWKKAGRS-----IIPYKTVKAREVWHTIIESAWKSAEPGVVFMEYYNQ 171 Query: 570 RSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD--YDKLASTIRT 627 S + + +N C E L VCNL ++NL + D +D+LA+T R Sbjct: 172 MSNSWYFNPIICTNPCGEQGLPG----WGVCNLSAMNLSKFYDEANHDVAWDELATTTRY 227 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 +VR LDNVID + E+ + + R +GLG MG + L+I Y SPE++E D+ Sbjct: 228 SVRFLDNVIDRTPYHFEENELNQKKERRVGLGTMGLAELMIKLNIRYGSPESLEFLDKLY 287 Query: 688 EFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 FI+ A AS ++A+E+G++ +F L+ Q F + + E Sbjct: 288 GFIAREAYLASADIAEEKGSFQAFDAELFLQSGFMKNMAEVYPE---------------- 331 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 + + V+ G RN + APT + + G S I+P + Y + + G Sbjct: 332 -VAEAVRKKGARNVTVITQAPTGSTGTMVGTSTGIEPYFAFKYFRQSRLG---------- 380 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +DE + + S ++L + TA + I + Q+W+ Sbjct: 381 --------FDEQFVPIAQDWLDSHPG-----EELPDYYVTAMSLSAEDHIRVQAAIQRWV 427 Query: 868 DQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 D + S + + + +Y A+ +G K R S T K D A Sbjct: 428 DSSISKTANCPSDFTVEDTKRLYELAFDLGCKGVTIYRDGSRDVQVLQTEKKEDKAAEAT 487 Query: 927 PVTDPNSSTHSLGIPSSCTS 946 + ++ + Sbjct: 488 TASTAETALEQSAAGQAAEE 507 >gi|167722571|ref|ZP_02405807.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei DM98] Length = 844 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 139/655 (21%), Positives = 254/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+ LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S + + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 AS ELA+ERGA++ F + + L + +++++ ++ Sbjct: 412 RASAELARERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G +G + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609 >gi|86158038|ref|YP_464823.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774549|gb|ABC81386.1| ribonucleoside diphosphate reductase, B12-dependent [Anaeromyxobacter dehalogenans 2CP-C] Length = 925 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 124/651 (19%), Positives = 234/651 (35%), Gaps = 71/651 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G E + E +L+ ++P FN HPQ S+CF+ V D + I Sbjct: 116 GYFTTEADAATFEAELAHLIYRQKMSFNSPVWFNVGVEEHPQCSACFINAVGDSMDSILK 175 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444 ML KY G G++ + +R + G G++ G + F++ + A + GGK R Sbjct: 176 LAHTEGMLFKYGSGTGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 234 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGD---------------------DRRRTHDMNTAN 483 + A L+ H DV EF++ + + D + N + Sbjct: 235 RAAKMVILDVDHPDVVEFVNCKADEEKKAWALIEAGYDGGFNVRGGAYDSVFFQNANHSV 294 Query: 484 WIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 + D FM+ V ++ W + R + + I A Sbjct: 295 RVTDAFMRAVLEDREW---------------------------KLTARTDGEALETIRAR 327 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 L R++ + G P + F N P + +++SN C+E + + CNL Sbjct: 328 DLMRQITEAAWLCGDPGMQFDTTINAWHPCPNTDRINASNPCSEYMF----LDDSACNLA 383 Query: 604 SINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 S+NL+ + FD + + + + ++ + K++ +R +GLG Sbjct: 384 SLNLMHFRSIEGGFDVESFKRAVDLTILAQEILVSNAKYPTPAIGKNSEEYRPLGLGYAN 443 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG--- 719 + L +PY S A ++ A + S +A G ++ ++ + Sbjct: 444 LGALLMASGLPYDSDGGRACAAAITALMTGEAYAMSARIADRMGPFAGYEKNRDPFLGVI 503 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV- 778 + L+ E + +R W + ++ G RN +APT TI + Sbjct: 504 RKHAQHVDLVDPTLVEPGLLSAARDAWGDALRQGMESGYRNGQVTVLAPTGTIGFMMDCD 563 Query: 779 SQSIDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIE 835 + I+P + Y K G +VN+ + L++ E + S L++ D +I Sbjct: 564 TTGIEPDIALVKYKKLVGGGMLKIVNNTVPLALQKLGYSSEEITSVLQFIDEVETIEGAP 623 Query: 836 RIPDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDF 887 + + + AF I M I Q ++ A S + + + + ++ Sbjct: 624 GLRPEHAPVFDCAFKARNGTRSIHYMGHIRMMGAVQPFLSGAISKTVNMPTSATPQDIEN 683 Query: 888 IYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 Y ++W +GLK R S +T K + + + Sbjct: 684 AYLESWKLGLKAVAIYRDGCKRSQPLNTGKEQEERKDVAEPRLARRRLPDE 734 >gi|157150204|ref|YP_001450837.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gordonii str. Challis substr. CH1] gi|157074998|gb|ABV09681.1| ribonucleoside-diphosphate reductase large chain [Streptococcus gordonii str. Challis substr. CH1] Length = 719 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 164/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + + + LA + Sbjct: 28 LHKDQEALEAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELAAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + + RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYASGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|146322250|ref|YP_001174721.1| ribonucleotide-diphosphate reductase subunit alpha [Lactococcus lactis] gi|145968741|gb|ABQ00019.1| putative ribonucleotide reductase subunit alpha [Lactococcus lactis] Length = 718 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 152/717 (21%), Positives = 273/717 (38%), Gaps = 77/717 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 RE L + + E I + + + ++ Sbjct: 23 HYDREALEEYLNTEIRDNLKTFDSI-DEKLDYLISHDYIDESVLSIYGENNREFVKKLFI 81 Query: 287 YERDFAF---EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + ++ F ++ Y++Y + N + V L L ++ Sbjct: 82 FAYNYGFKFKSFMAAYKFYNQYAMKTNDLNYYLENFEDRAVFNALYLANGDRNLAHK-IL 140 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 L S + +TPT N+G + ++ SCFL + D + I + L++ GG+G Sbjct: 141 EELISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRNINSALQLSRIGGGVGV 200 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G+ I S GV+P +K+ D+ NQ G+R GA YL +H D+ EF Sbjct: 201 NLSNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEF 260 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 L +K D++ R ++ +PD + + + N LF+P + +YG F Sbjct: 261 LSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMCLFNP---YHVERVYGIPFSYVD 317 Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ + I+A L +++ + E+G+P+I D N +P G + Sbjct: 318 LTKEYDTMVANGEIEKTVINARELEQEISRLQQESGYPYILNIDTANRTNPV--KGKIIM 375 Query: 582 SNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 SNLC+EI V S NL + N + +I A+R L Sbjct: 376 SNLCSEILQPQEPSILNLDLSYKKVGTDISCNLGSMNMVNLMEAKDFGKSIEYAIRALTT 435 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + N + IGLG MG + L L I Y S EA+E D ++++ Sbjct: 436 VTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMNYY 495 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LP 745 ++ AS +++ E + +F+ S + G + D + + Sbjct: 496 SLKASHQISIEKNETFHNFEYSRYADGSY-FDYYLAKKFHFTSEKVAKIFENILLPTIED 554 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W LK+ V G+ + N +AIAP +I+ I S S+ P Q + + G Sbjct: 555 WQLLKENVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQEKKVGSIFYPAP 614 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L N + + TA+ +D +I+ ++ Q Sbjct: 615 YLSN-------------------------------KTLRYYKTAYNMDQRKIIDIYAKAQ 643 Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + IDQ SL +++ + + L+ + AW G+K+ YY+R+ Sbjct: 644 QHIDQGMSLTVFMRSVLPEGIYEWKKQGSLKLTTRDLNRLRNYAWTKGIKSLYYVRT 700 >gi|262283136|ref|ZP_06060903.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sp. 2_1_36FAA] gi|262261388|gb|EEY80087.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sp. 2_1_36FAA] Length = 719 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 164/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + + + LA + Sbjct: 28 LHKDQEALEAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELAAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + + RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-EGMEERVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESSNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|261209283|ref|ZP_05923675.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289567002|ref|ZP_06447403.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium D344SRF] gi|294615273|ref|ZP_06695150.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1636] gi|260076829|gb|EEW64564.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289161203|gb|EFD09102.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium D344SRF] gi|291591870|gb|EFF23502.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1636] Length = 719 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 283/709 (39%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIACERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|308178759|ref|YP_003918165.1| ribonucleoside-diphosphate reductase subunit alpha [Arthrobacter arilaitensis Re117] gi|307746222|emb|CBT77194.1| ribonucleoside-diphosphate reductase alpha chain [Arthrobacter arilaitensis Re117] Length = 721 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 162/672 (24%), Positives = 263/672 (39%), Gaps = 68/672 (10%) Query: 259 YIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQ 318 I+ + + L ++ +LG + Y L + Sbjct: 73 LIDNNYYEEAFLRAYDPAFVTSLHERVQMAGHRFATFLGAFKFFTSYALRTFDGTTYLEN 132 Query: 319 AFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVP 377 RVA E + + S F +TPT N+G +L SCFL + Sbjct: 133 FG-ERVAATALFLGQGNETLTTSLADEMISGRFQPATPTFLNAGKAQRGELVSCFLLRLE 191 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D+L I + L+K GG+ T +R GA I ++ GV+P +K+ D+ Sbjct: 192 DNLESIGRGVNSALQLSKRGGGVALLLTNLRETGAPIKQIQNQASGVVPVMKILEDSFSY 251 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ K +N Sbjct: 252 ANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDVTFKLAKENR 311 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFR-KISAVALWRKMLTMLFET 556 LFSP D+ YGK N ++ + ISA ++ + + FE+ Sbjct: 312 DMHLFSP---YDVAREYGKPLSDLSVNDHYDELVANPRIRKTTISAREFFKTLAELQFES 368 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGS 604 G+P++ F+D N +P G V+ SNLC+EI + CNLGS Sbjct: 369 GYPYVLFEDTVNRANPL--AGHVNMSNLCSEILQVNTPSTLDTAGGYTKIGNDISCNLGS 426 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGF 663 +N+ A D +TI TAVR L +V D + + N+ AIGLG M Sbjct: 427 LNIAAA-----MDSPDFGATIETAVRALTSVSDQTDIDAVPSIAAGNNASHAIGLGQMNL 481 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP 722 L I Y S E ++ D +++HA+ S ++A ER ++ F S + G + Sbjct: 482 HGFLASQRIRYGSEEGIDFTDIYFLTVTYHALRVSNQIAIERGTTFAGFGTSAYADGSYF 541 Query: 723 IDSIGLLAEVRDE--------LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 I E + + +R W L+K V G+ N+ AI PT +I+ Sbjct: 542 DKYIERDWLPATERVAALFSQVGIAIPTREDWQALRKSVMAHGIYNAYLQAIPPTGSISY 601 Query: 775 ICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 + + SI P + ++ G + Sbjct: 602 VNNATASIHPIAAKIEIRKEGKLGRLYYPAPHM--------------------------- 634 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 D + A+EI +I++ + + +DQ SL L+ + + + ++ A Sbjct: 635 ----TDANIEFFEDAYEIGYEKIIDTYAAATRHVDQGLSLTLFFRDSATTRDINKAQIYA 690 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 691 WRAGIKTLYYIR 702 >gi|69245953|ref|ZP_00603725.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|257880354|ref|ZP_05660007.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257891013|ref|ZP_05670666.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257894266|ref|ZP_05673919.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|258614694|ref|ZP_05712464.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecium DO] gi|260562342|ref|ZP_05832856.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|293563176|ref|ZP_06677634.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1162] gi|293568384|ref|ZP_06679705.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1071] gi|294617335|ref|ZP_06696974.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1679] gi|314939362|ref|ZP_07846603.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a04] gi|314941565|ref|ZP_07848450.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133C] gi|314949608|ref|ZP_07852932.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0082] gi|314953715|ref|ZP_07856590.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133A] gi|314992171|ref|ZP_07857615.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133B] gi|314997662|ref|ZP_07862592.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a01] gi|68195483|gb|EAN09927.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|257814582|gb|EEV43340.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257827373|gb|EEV53999.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257830645|gb|EEV57252.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|260073266|gb|EEW61607.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|291588905|gb|EFF20732.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1071] gi|291596408|gb|EFF27662.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1679] gi|291604867|gb|EFF34343.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1162] gi|313588297|gb|EFR67142.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a01] gi|313593274|gb|EFR72119.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133B] gi|313594299|gb|EFR73144.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133A] gi|313599624|gb|EFR78467.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133C] gi|313641347|gb|EFS05927.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0133a04] gi|313644032|gb|EFS08612.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium TX0082] Length = 719 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALVAFFEENVKPNTMTFPSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVNITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYATAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|257125879|ref|YP_003163993.1| ribonucleoside-diphosphate reductase, subunit alpha [Leptotrichia buccalis C-1013-b] gi|257049818|gb|ACV39002.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptotrichia buccalis C-1013-b] Length = 699 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 160/683 (23%), Positives = 284/683 (41%), Gaps = 58/683 (8%) Query: 249 QCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--- 305 ++ + +K + + K D F + Y Sbjct: 44 NTVFFHNLEEKMRYLIKNDYYINFYEMYSHDEIKEVFKLVYDKKFRFASFMSASKFYQSY 103 Query: 306 --FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGT 363 +E + R+A ++A E+ +L + + +TPT NSG Sbjct: 104 ALMDDTGEKFLERYED---RIATVSLYLAQGNVEKAKEYALMLINQEYQPATPTFLNSGK 160 Query: 364 RHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 + +L SCFL + D+L GI + L+ GG+ + + +R G I G G++ Sbjct: 161 KRSGELVSCFLDEMGDNLSGIGYIFDSSMKLSSIGGGVSINLSKIRARGEAIKGVEGRAS 220 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTA 482 GV+P +K+ D NQ G+R GA YL +H D+ EFLD +K D++ R ++ Sbjct: 221 GVLPIMKILEDIFSYANQLGQRAGAGAVYLNVFHSDINEFLDSKKINVDEKIRIKSLSIG 280 Query: 483 NWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISA 542 +P+ FM+ ++ F+P V + Y E + E YE+ D +K +KI+A Sbjct: 281 VIVPNKFMQLAIEDEVCYTFNPHTVFLEYGQYLDEMD-MNEMYEKLVDNPNVKK-KKINA 338 Query: 543 VALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSE 595 L K+ E+G+P++ FKD N + +G V SNLCTEI N+ E Sbjct: 339 RELLVKISQTQKESGYPYLFFKDNANKEHALKEIGTVKFSNLCTEIMQLSEVSDINAYYE 398 Query: 596 ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHR 654 E + S NL + + ++ + A+ L V D+ N + KK+N Sbjct: 399 EDTIRRGISCNLGSLNIATVMENKRIKEATKAAIDSLTMVSDLTNIDIVPSIKKANDELH 458 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 ++GLG M L I Y S EA++ + ++F+++ S+E+A+E+ + F+ Sbjct: 459 SVGLGAMNLHGYLAKNFIMYESKEALDFCNVFFMMVNFYSLERSMEIAKEKGETFKDFEK 518 Query: 714 SLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 S + G + + + +++ + ++ W LK++V G+ N+ MAIA Sbjct: 519 SEYANGNYFDKYITKEYVPQTEKIKQLFEGICIPTKEDWANLKEQVMKHGVYNAYRMAIA 578 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 P + + I + S+ P + V+ +L N+ Sbjct: 579 PNQSTSYIMNSTASVMPVVDTIEVREYGDSTTFYPMPYLTND------------------ 620 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP-SGKKLD 886 + +A++++ +++ S Q+ +DQ S LY S + L Sbjct: 621 -------------NYFFYKSAYDMNQKNILKLISVIQRHVDQGISTILYTKSTDSTRDLA 667 Query: 887 FIYRQAWLMGLKTTYYLRSRSAT 909 +Y A +GLK+ YY R+R AT Sbjct: 668 RLYIYAHRLGLKSLYYTRTRKAT 690 >gi|332361650|gb|EGJ39454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1056] Length = 719 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 164/719 (22%), Positives = 282/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIP-- 553 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 S W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 554 SSEDWVELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|223932818|ref|ZP_03624815.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus suis 89/1591] gi|330833007|ref|YP_004401832.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus suis ST3] gi|223898527|gb|EEF64891.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus suis 89/1591] gi|329307230|gb|AEB81646.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus suis ST3] Length = 719 Score = 295 bits (754), Expect = 3e-77, Method: Composition-based stats. Identities = 161/716 (22%), Positives = 292/716 (40%), Gaps = 80/716 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E + +K+ + + + E ++ L + +F ++ + L Sbjct: 28 LHKDQEAVKAFFKENVLPNTKQFDSILDKIAYLLEENYLEKEFLDQYSPEF-IIKIDQFL 86 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 K + ++ Y++Y L N + ++ RV E+ A+ N Sbjct: 87 KDQNFRFKSFMAAYKFYNQYALKTNDGAYYL-ESMEDRVLFNALYFAEGNEELALNLANE 145 Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 MIHLRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD F + +N LFSP V + + + E Sbjct: 266 TKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSPYSVELEYGV-PYSYLDITEK 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I+ + I A L ++ + E+G+P++ D N +P G + SNL Sbjct: 325 YDELVANPRIRKTK-IKARDLETEISKLQQESGYPYVINIDTANRSNPV--DGKIIMSNL 381 Query: 585 CTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI + CNLGS N++ + ++RT R L Sbjct: 382 CSEILQVQTPSVINDSQEYLTMGTDVSCNLGSTNIVNLMKSP-----DFGRSVRTMTRAL 436 Query: 633 DNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + + N +IGLG MG S L I Y S AVE + ++ Sbjct: 437 TYVTDHSHISAVPSIEAGNSQAHSIGLGAMGLHSYLAQNLIDYGSKTAVEFTNIYFMLLN 496 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRL 744 + + S +A+ER + +F+ S + G + D V++ + S Sbjct: 497 YWTLVESNNIARERKATFHNFEKSKYADGTYFDKYVTGDYQPQSERVKELFEGIFIPSGQ 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W +L+++VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 557 DWADLREKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP- 615 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 L E + + +A+++D +I+ + Sbjct: 616 --------AAGLATETI----------------------PFYKSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L ++ + + L + A+ G+K+ YY+R+ Sbjct: 646 TEHVDQGLSLTLFLRSELPKELYEWKKENKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|168493104|ref|ZP_02717247.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC3059-06] gi|183576680|gb|EDT97208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC3059-06] Length = 719 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L LA +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMKDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|297622358|ref|YP_003703792.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera radiovictrix DSM 17093] gi|297163538|gb|ADI13249.1| ribonucleoside-diphosphate reductase, alpha chain [Truepera radiovictrix DSM 17093] Length = 554 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 157/581 (27%), Positives = 245/581 (42%), Gaps = 94/581 (16%) Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A F++ L+ + S+P N G SCF + VPD + GI GA E +++KY Sbjct: 52 FAERFFDYLARGFYSLSSPIWANFGLSRGLPISCFGSYVPDSMAGILGAAAEVGIMSKYG 111 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG + +R GA I NG S+G + FL++ + QG R+G+ AYL H Sbjct: 112 GGTSAYFGDLRPRGAPIRD-NGFSEGAVNFLRLFDTLIDVTKQGATRRGSFAAYLPIDHP 170 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 DVEEFL +R D ++ + D +++ + Sbjct: 171 DVEEFLAIR----SDGNPIQNLFFGVAVSDAWLEAMRAGDA------------------- 207 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 +W K+L E G P++ F D +P+ + Sbjct: 208 -----------------------DKRRVWAKVLQKRTEVGLPYVLFTDNATRGAPEVYRD 244 Query: 578 V---VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 V SSNLCTEI L + +E+ VC+L S+NL + A D +L AV Sbjct: 245 RGLVVRSSNLCTEIMLPVAEDESFVCDLASMNLATYDAWRATDAVRLLVFFLDAVMTEFI 304 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 + E+A++ HRA+G+G++G+ S L +P+ S +A + + + A Sbjct: 305 DKSASLPFFERARRFAVRHRALGVGVVGYHSLLQARRVPFGSLQAALLNRQIFRELREAA 364 Query: 695 ISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVK 754 AS ELA+ G + +G+ Sbjct: 365 DDASAELARRYGEPALCEGT---------------------------------------- 384 Query: 755 TIGMRNSNCMAIAPTATIANICG-VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G RN+ +A+APT + A I G VS S++P N YV+ T N L L++R Sbjct: 385 --GRRNTTLLAVAPTTSSAFILGGVSPSVEPLRSNYYVRDLAKAVVTYRNPALREVLRER 442 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 A+ + HDGS+ +++ + D+ K + AT EI P +I A+ RQ +IDQ QSL Sbjct: 443 GHDTPAVWRSILAHDGSVQHLDCLSDEEKGVFATFSEISPRDIIVQAAGRQAFIDQGQSL 502 Query: 874 NLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 NL + E + L+ + +A GLK+ YY + SA Sbjct: 503 NLMIHPETPARDLNALVLEAHARGLKSLYYQHAISAAQALN 543 >gi|328945481|gb|EGG39632.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1087] Length = 719 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 161/715 (22%), Positives = 280/715 (39%), Gaps = 84/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E IEE + + + L + + Sbjct: 32 KEALEAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFIHAQ- 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y++Y L N + ++ RV E A + N + Sbjct: 90 DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + + Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD F + +N LFSP V + + + E Y+ Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITEKYDE 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 I + I A L ++ + E+G+P++ D N G + SNLC+E Sbjct: 328 LVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSNLCSE 384 Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I CNLGS N++ + +IRT R L V Sbjct: 385 ILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y S EAVE +++ Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFVPSA--ED 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|322385109|ref|ZP_08058756.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus cristatus ATCC 51100] gi|321270733|gb|EFX53646.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus cristatus ATCC 51100] Length = 719 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 162/715 (22%), Positives = 287/715 (40%), Gaps = 84/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + + E IEE + + + L+ + + Sbjct: 32 KEALEAFFKENVEPSTMKFASI-TEKIQYLIEENYLEKEFIQLYSPEYIEELSAFIHAQ- 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y++Y L N + ++ RV E A + N + Sbjct: 90 DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + + Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD F + +N LFSP + + + + E Y+ Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEDMYLFSPYSIEREYGV-PFAYIDITEKYDE 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +I + I A L ++ + E+G+P++ D N +P G + SNLC+E Sbjct: 328 LVANPKITKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPI--DGKIIMSNLCSE 384 Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I CNLGS N++ + +IRT R L V Sbjct: 385 ILQVQEPSLLNDAQEYIHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y S EAVE +++ Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ ++ + + Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFKDIFIPTAA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|18653875|ref|NP_570809.1| large ribonucleotide reductase [Macacine herpesvirus 5] gi|4494973|gb|AAD21395.1| large ribonucleotide reductase [Macaca mulatta rhadinovirus 17577] Length = 788 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 170/753 (22%), Positives = 291/753 (38%), Gaps = 90/753 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLH 308 +Y + E S + L L D K + + YL YD Y L Sbjct: 75 RDYLAVFGERLSDEVRAFMSKHEAALDGLLQDFKQSKAYTNFVNCGYLSAVRFYDTYVLR 134 Query: 309 INGS--RIEMPQAFFMRVAMGL--------ALKETEKEKRAVEF-----------YNLLS 347 GS E FMRVA+ + L+ET + E ++ +S Sbjct: 135 TQGSSPIFESVAQMFMRVAVFVACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYIS 194 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSGGLGNDWT 405 S C+TP L ++G R QLSSCF+ + +E + L G+G D + Sbjct: 195 SQIVCCATPVLRSAGLRGGQLSSCFILKPSMATEDKTLKALHEEMSPLLASKSGVGIDVS 254 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 + + + LK+ N N R AY+E WH + +FL+ Sbjct: 255 SFA-----------EHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNA 303 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYE 523 + + R H++ +P+LF + N W LF+P+ +L LYG EFEI Y Sbjct: 304 KMPENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEIEYN 361 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582 K + ++ ++ + +TG P++ K+ N + G ++ S Sbjct: 362 RLVAA-----GKHSSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCS 416 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-------------YDKLASTIRTAV 629 NLC EI + +VCNL +I+L ++ + ++ L + AV Sbjct: 417 NLCAEIVQQP-EGQASVCNLANISLPKCLRPHRGESGVEPGKGDVTFGFELLDDAVEAAV 475 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +++ I E ++ R++G+G+ G L Y E+ ++ E + Sbjct: 476 IIVNACILGGTAPTESVRRG-QEERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQA 534 Query: 690 ISFHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 + F A+ S E L E + ++ S QGVF + + L W+ Sbjct: 535 MYFTAVQTSHEIVLLGEGTPFRGWERSRLAQGVFHWQTWDGVKPSHPPLE-------RWE 587 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L + + G+ NS +A+ PTA + + G +++ P + N+ K + N Sbjct: 588 QLGRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFF 647 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +K DL ++ + G + + D KI TAF+ P+ +E A R ++ Sbjct: 648 KRVKPGDLRT------VRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFV 701 Query: 868 DQAQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923 DQ+QSLN +L E + + + + +GLKT YY R ++K T L Sbjct: 702 DQSQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCR------IQKQTKLNALQCL 755 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTE--CEVCQ 954 + V + +S + C CQ Sbjct: 756 DQVVGDNISSEGAESNCVQKADGERTKVCLACQ 788 >gi|254233681|ref|ZP_04927006.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis C] gi|124599210|gb|EAY58314.1| ribonucleoside-diphosphate reductase (alpha chain) nrdE [Mycobacterium tuberculosis C] Length = 732 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 162/672 (24%), Positives = 273/672 (40%), Gaps = 72/672 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 71 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686 Query: 885 LDFIYRQAWLMG 896 ++ AW G Sbjct: 687 VNKAQIYAWRNG 698 >gi|297539886|ref|YP_003675655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera sp. 301] gi|297259233|gb|ADI31078.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera sp. 301] Length = 721 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 132/624 (21%), Positives = 256/624 (41%), Gaps = 56/624 (8%) Query: 321 FMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA ET EKR E + + + N+G + +C ++ Sbjct: 51 YARVARALADVETTDEKRAEWHEKFLWALRRGAIPAGRITSNAGALEHKPATSTINCTVS 110 Query: 375 TV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 V D + I G + E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 111 GVISDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYDK 170 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA A + H DV +F+ ++ + R N + I FM+ V Sbjct: 171 MCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKR----ENGRLRQFNLSCLITKEFMEAV 226 Query: 494 TQNAGWTLFSPDE----------VSDLHDLYGKEF--EIAYENYERQADRGEI--KVFRK 539 +A W L P +DL + +E+ + Y D G++ +V++ Sbjct: 227 KADAEWKLAFPVTEKEAIIDGLNTNDLAQVVWREWPIKGKYLTKLDGVDAGKVACRVYKT 286 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAV 599 I A LW +++ ++ P D N + + ++N C E L Sbjct: 287 IKARRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRTTNPCGEQPLPPY----GA 342 Query: 600 CNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 C LGS+NL FD+ + + R+LDNV++IN +++ + R Sbjct: 343 CLLGSVNLTRFVKKPFTDEAYFDWKEYREVVAIFTRMLDNVVEINGLPLQEQRDEIMRKR 402 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG- 713 G+G +G S+L ++ + Y E+++ DE ++ + V+LA+E+G Sbjct: 403 RHGMGYLGLGSSLTMMKLKYGEEESLKFTDEVTRVMAEEGWNTGVQLAEEKGPAPIMDEK 462 Query: 714 ------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNCM 764 L + D I + ++ ++ + + SR + L+ ++ G+R ++ Sbjct: 463 FEVTADMLAKRPEMAADGIKVGQKIAGKVLLGKYSRYMQQFPEGLRNQIAAKGVRFTHHS 522 Query: 765 AIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMIS 822 +IAPT TI+ S I+PS+ + Y ++ + ++ D++ +++ Sbjct: 523 SIAPTGTISLSLANNASNGIEPSFAHHYARNVI--------REGKKSKEKVDVFSYELLA 574 Query: 823 DLKYHDGSIGNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EP 880 + + + P++ L + I ++ + QKWID + S + + + Sbjct: 575 YRELINPNAMPFSDKPEEQLPDYFLDSSTIMAKAHVDIQAASQKWIDSSISKTINVPTDY 634 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904 + IY A+ GLK R Sbjct: 635 DFEDFKNIYLYAYDKGLKGCTTFR 658 >gi|90410606|ref|ZP_01218622.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK] gi|90328847|gb|EAS45131.1| hypothetical protein P3TCK_21645 [Photobacterium profundum 3TCK] Length = 716 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 146/658 (22%), Positives = 265/658 (40%), Gaps = 62/658 (9%) Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLA--LKETEKEKRAVEFYNL 345 D A++ ++I +Y L E F RVA LA K+ KE EF Sbjct: 15 DIAYQSTSMEIWNSKYRLKTKHGIAIDETVDDTFKRVARALADLEKDKVKEHWYNEFLWA 74 Query: 346 LSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGL 400 L + + N+G + +C ++ T+ D + I G + E + K G+ Sbjct: 75 LRNGAI-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGI 133 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 G D++ +R GA + G + G + F+ + + V+ G R+GA ++ H D+ Sbjct: 134 GYDFSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDII 193 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS-------DLHDL 513 +F+ ++ + R N + I + F++ V + W+L P DLH Sbjct: 194 DFIRAKR----EDGRLRQFNLSLLISEEFVQAVKNDKDWSLVFPVTAKEAKQDKLDLHTD 249 Query: 514 YGKEFEIAYENY---ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + E + R K++R + A LW ++T ++ P D N Sbjct: 250 SSIMWTDWPLTEGLVEDKDGRVACKIYRTLPARKLWNVIMTSTYDYAEPGFILIDKVNQM 309 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTI 625 + + ++N C E L C LGSINL + FD+D + Sbjct: 310 NNNWFCEEIRATNPCGEQPLPPY----GACLLGSINLTKFVRDPFTNTAAFDWDGFRRVV 365 Query: 626 RTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 R+LDNV++IN +EK + R G+G +G S +L Y S ++ ++ Sbjct: 366 AIFTRMLDNVVEINQLPLEKQRHEIMHKRRHGMGFLGLGSTTTMLTHKYGSAASIAFTEQ 425 Query: 686 SMEFISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAM 738 + ++ ++ LA+E+GA + + D I + +++ ++ Sbjct: 426 VAQELAISGWKEALSLAKEKGAAPVMDQVFTITAKMMRQRPEMADDGIKVGDKIKGKVLH 485 Query: 739 NRTSRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLY 790 + SR EL + + T+G R ++ +IAPT TI+ S I+PS+ + Y Sbjct: 486 AKYSRYMQQVAEIEPELIEALSTVGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHY 545 Query: 791 VKSNM-SGDFTV--VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHAT 847 ++ + +G T V+ + L R+L + + S ++P+ T Sbjct: 546 SRNVIVTGKKTKESVDVYSFELLAYRELVNSKAMPY------STDEETQLPE----YFIT 595 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 A +I P ++ + Q+WID + S + + + IY A+ GLK R Sbjct: 596 ADDITPSQHVDVQAAAQRWIDSSISKTANIPTDFPFEDFQDIYMNAYDKGLKGCTTFR 653 >gi|298253144|ref|ZP_06976936.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1] gi|297532539|gb|EFH71425.1| ribonucleotide reductase, alpha subunit [Gardnerella vaginalis 5-1] Length = 741 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 167/736 (22%), Positives = 286/736 (38%), Gaps = 82/736 (11%) Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-------PEYFCRYI 260 I +Y + A L + + ++ +K + E I Sbjct: 30 ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFASTRERLNYLI 89 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + + D L + +LG Y Y L + + Sbjct: 90 DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGKQYLENFA 149 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379 A+ L L + EK A + + + + F +TPT N G + SCFL + D+ Sbjct: 150 QRAAAVALELAD-GDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 208 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I + L+K GG+ T +R LGA I +S GV+P +K+ D+ N Sbjct: 209 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 268 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 269 QLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 328 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558 LFSP D+ YGK F ++ +K I A + + + FE+G+ Sbjct: 329 ALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTIAEIQFESGY 385 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSIN 606 P+I F+D N +P G + SNLC+EI S CNLGS+N Sbjct: 386 PYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLN 443 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 + N L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 444 IAKAMDGN------LGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHG 497 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724 L H+ Y S EA++ D I++HA AS LA ERG A+++FK S + + + Sbjct: 498 FLAREHMQYGSEEALDFTDMYFMTIAYHAYKASHALAVERGHAFANFKTSAYAKPAGKGN 557 Query: 725 SIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++ + + W++L+ + + G+ N A+ PT Sbjct: 558 YFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILSDGIYNEYLQAVPPTG 617 Query: 771 TIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + ++ G +++ N+ Sbjct: 618 SISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM------------------ 659 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 + A+EI +I++ + + +DQ SL L+ + + + L+ Sbjct: 660 -------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKA 706 Query: 889 YRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 707 QIYAWRKGIKTLYYIR 722 >gi|313884788|ref|ZP_07818542.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619987|gb|EFR31422.1| ribonucleoside-diphosphate reductase, alpha subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 725 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 159/714 (22%), Positives = 294/714 (41%), Gaps = 80/714 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + L + + ++A ++ +D ++ ++ Sbjct: 36 KEAARAFFLEHVNPNTVFFYTLDEKLDYLIEHDYIEAEFIN----KYDRAFIKELMQSTY 91 Query: 290 DFAF---EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 D+ F ++G Y++Y L N +E + R+ A + + Sbjct: 92 DYKFRFKSFMGAHKFYNQYALKTNDGKRYLERFED---RIVFNALYLANGDPDFARKLRD 148 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 L + F +TPT N+ R ++ SCFL + DD+ I ++ L+K GG+G + Sbjct: 149 ELITQRFQPATPTFLNAGRKRRGEMVSCFLIEISDDMNAIGRSINSALQLSKRGGGVGIN 208 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I + GV+P +K+ D+ NQ G+R GA YL +H DV FL Sbjct: 209 LSNLREEGAPIKKVENAASGVVPVMKLFEDSFSYANQLGQRNGAGVVYLSVFHPDVVRFL 268 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + V +NA LFSP +V + E Sbjct: 269 STKKENADEKIRVKTLSLGLTVPDKFYELVAENADMFLFSPYDVEREYGQAFAYVN-ITE 327 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 YE I+ ++ + A L ++ + E+G+P+I D N +P G + SN Sbjct: 328 EYENMVHNPNIRKYK-VKARELENEISKLQQESGYPYIINIDTANEANPI--DGRIVMSN 384 Query: 584 LCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 LC+EI + S NL + N A +I AVR L V Sbjct: 385 LCSEILQVQKPSKIRDDQSYEEMGMDISCNLGSTNVVNMVQSPNFAQSIDVAVRALTFVT 444 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D + + K N IGLG MG + + I Y S E++E+ + ++++ + Sbjct: 445 DHTSIDAVPSVKNGNELQHTIGLGAMGLHTLFAINQIDYGSDESLELTEAYFYAVNYYTL 504 Query: 696 SASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLPWDE 748 +S ++AQER ++ +F S + G++ I E++ + ++ + W Sbjct: 505 LSSNQIAQERGQSFYNFDKSDYASGLYFDRYIDQPFEIQSDKVKEIMKGIHLPTAEDWQA 564 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 LK++V+ G+ ++ AIAPT +I+ + S S+ P + + + +G +L Sbjct: 565 LKEKVQAHGLYHAYRQAIAPTGSISYVNETSASLHPIIRLIEERQEKKTGKTYYPAPYLS 624 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 N+ + + ++ID +I+ + QK I Sbjct: 625 NDTI-------------------------------DYYKSVYDIDMRLVIDVYAAAQKHI 653 Query: 868 DQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ S+ L++ ++ + + L+ + AW G+K+ YY+R+ Sbjct: 654 DQGMSMTLFMRSEIPSGLYPWKKADDNKLTTRDLNILRNYAWNQGIKSIYYVRT 707 >gi|152985283|ref|YP_001351609.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudomonas aeruginosa PA7] gi|150960441|gb|ABR82466.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Pseudomonas aeruginosa PA7] Length = 714 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 143/625 (22%), Positives = 250/625 (40%), Gaps = 62/625 (9%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + +E F L + + + N+G + +C ++ Sbjct: 48 WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 106 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 107 GTIQDSMDDILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 166 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV EF+ ++ + R N + I D FM+ V Sbjct: 167 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 222 Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P V D + + +E+ +R KV+ ++ A L Sbjct: 223 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPTQDNYVQRADGLVACKVYGQVRARHL 282 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 338 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+D+ +R R+LDNV++IN +++ ++ R G+G Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLQQQRQEILGKRRHGMGF 398 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 L + D + +R + + SR EL + + G R ++ +IA Sbjct: 459 MLRKRPEMAADGYKVGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 518 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ L+ E ++ E +L Sbjct: 519 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 566 Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + + D L TA + P ++ + QKW+D + S + + Sbjct: 567 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 626 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + IYR AW GLK R Sbjct: 627 YPFEDFKDIYRYAWHQGLKGCTTFR 651 >gi|222831854|gb|EEE70331.1| predicted protein [Populus trichocarpa] Length = 280 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 152/250 (60%), Gaps = 10/250 (4%) Query: 27 KGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQH 86 + ++I+RNG V SF+P+KI+ A+ KAF+AV G + S RV++I++ LT+ V L++ Sbjct: 36 QDYKLIRRNGAVVSFEPNKIAVAMTKAFLAVNGGQGAGSARVREIVEQLTQNVVRALVRS 95 Query: 87 NKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAP--K 144 + HIED+QD VE +LM+SG H++ R YVLYRE+R+ RA + Sbjct: 96 RPNGGTFHIEDVQDHVELALMRSGEHEVARAYVLYREKRTQERAQANAQAVARVQEAGVS 155 Query: 145 LKIMMDDGTLISFNSKRLEMIVEEACSGL-QDVSSKIVLSETYKNMYDGLSESDLETALI 203 + D+G + L +++ ACSGL + VS++ +L ET KN+YDG+ + + + I Sbjct: 156 FNVT-DNGVTYQLDLVALHALIDNACSGLGKAVSAEPILKETLKNLYDGVPMTQVYDSAI 214 Query: 204 FSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEG 263 ++RTLIEK+P Y++VTAR LL +R+E+L + T EM Y EYF ++I G Sbjct: 215 LAARTLIEKDPAYSQVTARILLHTIRKEILGA------EVTQTEMATKYAEYFPKFIARG 268 Query: 264 VKARLLHESM 273 ++A LL E + Sbjct: 269 IEAELLDEKL 278 >gi|283782687|ref|YP_003373441.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella vaginalis 409-05] gi|283441659|gb|ADB14125.1| ribonucleoside-diphosphate reductase, alpha subunit [Gardnerella vaginalis 409-05] Length = 741 Score = 294 bits (753), Expect = 4e-77, Method: Composition-based stats. Identities = 165/736 (22%), Positives = 285/736 (38%), Gaps = 82/736 (11%) Query: 208 TLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLY-------PEYFCRYI 260 I +Y + A L + + ++ +K + E I Sbjct: 30 ERIRNSRDYHVLNAMLGLFDPEKGIQFDKDQEAEKLYVSGYVQEHSMKFASTRERLNYLI 89 Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAF 320 + + D L + +LG Y Y L + + Sbjct: 90 DNYYYNGNVFNKYSDEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDGKQYLENFA 149 Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDD 379 A+ L L + EK A + + + + F +TPT N G + SCFL + D+ Sbjct: 150 QRAAAVALELAD-GDEKAATNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSCFLVRLEDN 208 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I + L+K GG+ T +R LGA I +S GV+P +K+ D+ N Sbjct: 209 MESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLLEDSFSYAN 268 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + + Sbjct: 269 QLGARQGAGAVYISAHHPDIMRFLDAKRENADEKIRIKSLSLGVVIPDITFELAKRKEKM 328 Query: 500 TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGH 558 LFSP D+ YGK F ++ +K I A + + + FE+G+ Sbjct: 329 ALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTIAEIQFESGY 385 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCNLGSIN 606 P+I F+D N +P G + SNLC+EI S CNLGS+N Sbjct: 386 PYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRDISCNLGSLN 443 Query: 607 LLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQS 665 + L +++ AVR L +V + + ++ ++ N AIGLG M Sbjct: 444 IAKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIGLGQMNLHG 497 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPID 724 L H+ Y S EA++ D +++HA AS LA ERG A+++FK S + + + Sbjct: 498 FLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGHAFANFKTSAYAKPAGKGN 557 Query: 725 SIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 ++ + + W++L+ + + G+ N A+ PT Sbjct: 558 YFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILSDGIYNEYLQAVPPTG 617 Query: 771 TIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ I + SI P + ++ G +++ N+ Sbjct: 618 SISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM------------------ 659 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 + A+EI +I++ + + +DQ SL L+ + + + L+ Sbjct: 660 -------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTTTTRDLNKA 706 Query: 889 YRQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 707 QIYAWRKGIKTLYYIR 722 >gi|325688331|gb|EGD30350.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK72] Length = 719 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|125717618|ref|YP_001034751.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK36] gi|125497535|gb|ABN44201.1| Ribonucleoside-diphosphate reductase, putative [Streptococcus sanguinis SK36] Length = 719 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 164/719 (22%), Positives = 282/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIP-- 553 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 S W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 554 SPEDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|304310470|ref|YP_003810068.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma proteobacterium HdN1] gi|301796203|emb|CBL44409.1| Ribonucleoside-diphosphate reductase, alpha chain [gamma proteobacterium HdN1] Length = 704 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 126/643 (19%), Positives = 255/643 (39%), Gaps = 56/643 (8%) Query: 302 YDRYFLHINGSRI-EMPQAFFMRVAMGLALKETEKEKR--AVEFYNLLSSFHFMCSTPTL 358 +G + + + R+A L E K+K+ E + + + + Sbjct: 15 QKYRLQTSDGEAVDQTMDDTWRRIARALCEVEKGKKKQEEWFENFFWALKNGAIPAGRII 74 Query: 359 FNS----GTRHPQLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 N+ +C ++ T+ D + I E + K G+G +++ +R GA+ Sbjct: 75 SNAGAQAYKSDTSTINCTVSGTIHDTMNDILAKNFEAGLTLKAGCGIGYEFSTLRPRGAY 134 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 + G K+ G + F+ + + T V+ G R+GA A + H DV +F+ +++ + Sbjct: 135 VSGAGAKTSGPLSFMDIFDRTCFTVSSAGGRRGAQMATFDVSHPDVLDFIRVKR----EN 190 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV----------SDLHDLYGKEFEIAYE 523 R N + + + F+ V + W L P + D + +E+ Sbjct: 191 GRLRQFNLSLLVSEKFIDAVRNDQQWALVFPIKTNSPDAQKLNLQDPEQVEWREWPSNDG 250 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 +V+RK++A +W +++ ++ P D N + + ++N Sbjct: 251 YITNDCGEVACRVYRKVAARKIWHVIMSSTYDFAEPGFILIDKVNQMNNNWFCENIRATN 310 Query: 584 LCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDI 638 C E L C LGSINL +N FD++K + R+LDNV+++ Sbjct: 311 PCGEQPLPPY----GSCLLGSINLTRFISNPFSVDAQFDWEKFRRMVSVFSRLLDNVVEV 366 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + R G+G +G SA+ +L I Y S E+VE ++ ++ + Sbjct: 367 NGLPLNHQAHEIQYKRRHGMGFLGLGSAMTMLRIKYGSKESVEFTEQIAREMAMTGWKTA 426 Query: 699 VELAQERGAYSSFKG----SLWDQGVFPI---DSIGLLAEVRDELAMNRTSRLPW----- 746 +ELA+E+G + + P D + +++ ++ + SR Sbjct: 427 LELAKEKGPAPIMEDEFEVTPSMLSKRPEMVADGYRVGDKIKGKVLHAKYSRYMQRIAEQ 486 Query: 747 -DELKKRVKTIGMRNSNCMAIAPTATIANICGV--SQSIDPSYQNLYVKSNMSGDFTVVN 803 L + +G R ++ +IAPT TI+ G S I+P++ + Y+++ + Sbjct: 487 DPALVDELAKVGARYTHHSSIAPTGTISLSIGNNASNGIEPTFAHHYIRNVIKEG----- 541 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP-DDLKKIHATAFEIDPMWLIESASR 862 ++ D++ +++ + P + L + ++ P ++ + Sbjct: 542 ---KKSKEKMDVFSFELLAYRALVNPKAMPFSENPAEKLPDYFTSTDDVSPEQHVDIQAA 598 Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 QKW+D + S + + + S + IY A+ GLK R Sbjct: 599 AQKWVDSSISKTINVPTDISYDRFKDIYLYAYDSGLKGCTTFR 641 >gi|57641671|ref|YP_184149.1| ribonucleotide-diphosphate reductase subunit alpha [Thermococcus kodakarensis KOD1] gi|57159995|dbj|BAD85925.1| ribonucleoside-diphosphate reductase [Thermococcus kodakarensis KOD1] Length = 1746 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 175/385 (45%), Gaps = 21/385 (5%) Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFAN-----NQFDYD 619 + + +H + + + E CNL SINL FD+D Sbjct: 1274 EIVYDFTVPEHHSYISNGFMSHNCGEEP-LYEYESCNLASINLAKFVKYDDEGKPYFDWD 1332 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 + A I+ + LDN ID+N + + ++ R IG+G+MG AL L IPY S E Sbjct: 1333 EYAYVIQKVAKYLDNAIDVNKFPLPEIDRNTKLTRRIGVGMMGLADALFKLGIPYNSKEG 1392 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + ++ E+++F+A SVE A+ERG + ++ + + G P++ Sbjct: 1393 FDFMRKATEYLTFYAYKRSVEAAKERGPFPLYEKTRYKDGELPVE----------GFYHR 1442 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 LPWDEL + +K G+RN PT +++ I S I+P + +Y KS G+F Sbjct: 1443 EIWNLPWDELVEEIKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 1502 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 V+ ELK+R LW + ++ + + GS+ +E IP+D++++ TA +I + I + Sbjct: 1503 YYVDPVFEAELKKRGLWSDEILKKISDNYGSVQGLEEIPEDMQRVFVTAMDIHWLDHILA 1562 Query: 860 ASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSAT----SVEKS 914 + Q W+ + S + + ++ + + + Y A+ +G K R S + SVE Sbjct: 1563 QANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGVTVYRDGSLSVQVYSVEGE 1622 Query: 915 TLKGVDGKLNAVPVTDPNSSTHSLG 939 K V K + V + + Sbjct: 1623 KKKRVPAKPSDYAVEKLKTIVEAEP 1647 Score = 177 bits (448), Expect = 8e-42, Method: Composition-based stats. Identities = 73/433 (16%), Positives = 146/433 (33%), Gaps = 76/433 (17%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A + V +R + ++ + + V R + Sbjct: 5 KVMKRDGRIVPFDKERIRWAIQRAMLEV-------GVRDEKLLNRVVRR-VVRRVNELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 I +IE+IQD VE LM++G + + Y+LYR++++++R + + Sbjct: 57 GQIPNIENIQDIVELELMRAGLFDVAKAYILYRKKKAEIREEKKKILNKDK--------- 107 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 L ++ + L + +SR L Sbjct: 108 -----------------------LDEIDKRF----------------SLNALRVLASRYL 128 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 I+ E + R L E++ +L + + + + Sbjct: 129 IKNEKGEIIESPRELFERVA--ILAVIPDILYDERVFDKNGGHEQDVSAIER-------- 178 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLA 329 +L R ++ + L + Y ++++P ++ M Sbjct: 179 ----YRENLDEYDGKFSIGRFRLNKWH-FERLLNLYRELAEKGQMKLPIDEVLK--MLEN 231 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389 E E++ L++ +FM +TP L NSG LS+CF+ + DD+ I A + Sbjct: 232 GAFDNYEDEIEEYFRLMTGQYFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHD 291 Query: 390 NAMLAKYSGGL---GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 AM+ K GG HI + + + + Sbjct: 292 VAMIQKAGGGCIDGNAKIIFENDGEEHIMTMAEMYERYKDLGEFYDPEYNRWGINVEEVP 351 Query: 447 AVCAYLETWHIDV 459 + ++ Sbjct: 352 VYVKSFDPSTKEI 364 Score = 79.9 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 83/215 (38%), Gaps = 32/215 (14%) Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 T D + + G +++ +R G + T G + G + F+ + + Sbjct: 731 TFYDLTVERYQNYLAGENGMVFVHNTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAV 790 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRV 493 + + QGG R+GA LE WH D+E+F+ + KNTG + +++ W + F + + Sbjct: 791 SDVIKQGGVRRGANMGILEVWHPDIEKFIHAKEKNTGTNVLSNFNISVGLW--EDFWEAL 848 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 + + L +P + ++I +L+ ++ M Sbjct: 849 KEGKRYPLINPRT---------------------------GEKVKEIDPKSLFEELAYMA 881 Query: 554 FETGHPWITFKDPCNIRSPQQH--VGVVHSSNLCT 586 + P + F D N R+ + + ++N C Sbjct: 882 WAKADPGVVFFDVINRRNVLEPAKGEKIRATNPCV 916 >gi|327468919|gb|EGF14391.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK330] Length = 719 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|94968153|ref|YP_590201.1| vitamin B12-dependent ribonucleotide reductase [Candidatus Koribacter versatilis Ellin345] gi|94550203|gb|ABF40127.1| Ribonucleoside-diphosphate reductase [Candidatus Koribacter versatilis Ellin345] Length = 1004 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 125/636 (19%), Positives = 229/636 (36%), Gaps = 55/636 (8%) Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 ++F+ G PQ S+CF+ +V D L I + ML K+ G G + +P Sbjct: 170 WHWNFLKQQAEFGPVGYTRPQCSACFINSVHDSLDSILTLAKTEGMLFKWGSGTGTNLSP 229 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDL 465 +R + G G + G + F++ + A + GGK R+ A L H D+ EF+D Sbjct: 230 LRSSNEQLSG-GGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNIEHPDIVEFIDC 288 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + PD + + + + D + + Sbjct: 289 KAKEEAKAWALMQQGYDGSSPD-----AEAYSSIFFQNANNSVRVTDDFMYAVVRDADFS 343 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + G+ V + A L K+ ++ G P + + N ++ +++SN C Sbjct: 344 TKAVKSGD--VVKTFKARWLLSKISEATWQCGDPGMQYDTTVNRWHTSKNTARINASNPC 401 Query: 586 TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEK 645 +E + + CNL S+NL+ N FD + + ++D + E Sbjct: 402 SEYMF----LDDSACNLASLNLMKFAPNGTFDVAAYRHACAITITAQEILVDNAGYPTES 457 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K++H +R +GLG + L +PY S + A + A S ++A+ Sbjct: 458 IMKNSHDYRPLGLGYANLGALLMAAGLPYDSDAGRDYAACVTAIMCGEAYLQSSKIAELG 517 Query: 706 GAYSS---------FKGS----LWDQGVFPIDSIGLL-------AEVRDELAMNRTSRLP 745 + GS + +D I + + + ++ Sbjct: 518 QPLTPATPITQSVEITGSACPGWYVNREPFLDVIRMHRASVNNINQKNVPAPVFEAAKAT 577 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVVN 803 WDE + + G RNS +APT TI + + I+P + Y K G +VN Sbjct: 578 WDEALQHGERHGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVKYKKLVGGGMIKIVN 637 Query: 804 SFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHATAF-------EIDPM 854 + + L + + + + Y D G+I I D+ + +F I M Sbjct: 638 NTVPAALFKLGYTSDQANATVSYIDATGTIEGAPHIKDEHLAVFDCSFKPAKGTRTISYM 697 Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 ++ + Q +I A S + L + + + Y Q+W +GLK R S Sbjct: 698 GHVKMMAATQPFISGAISKTVNLPKDATIDDIMEAYIQSWKLGLKAVAIYRDGS------ 751 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 LNA + + + P + S+ + Sbjct: 752 ----KGGQPLNASGTSTTDKLKKAEAAPVASESEDD 783 >gi|222153354|ref|YP_002562531.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus uberis 0140J] gi|222114167|emb|CAR42680.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus uberis 0140J] Length = 719 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 165/716 (23%), Positives = 288/716 (40%), Gaps = 86/716 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + +++ + + DF + LA +K E+ Sbjct: 32 KEALDAFFKENVIPNTKAFPSVTEKINFLLEHDYIESEFIKKYTFDF-IEELAALIKEEK 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + M A+ A E A + + Sbjct: 91 FQFKSFMAAYKFYQQYALKTNDGEYYLESLEDRVMFNALYFA---DGNEDLAKDLAIEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + QN LFSP +V + + + E Y+ Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARQNEDMYLFSPYDVEREYGVA-FNYIDITEKYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 +I + I A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 327 ELVANPKITKTK-IRARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLCS 383 Query: 587 EITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI CNLGS N+L + +I+ R L Sbjct: 384 EILQVQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRALTF 438 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + K N GLG MG S L HI Y SPE+VE D +++ Sbjct: 439 VTDSSQIEAVPTVKNGNQQAHTFGLGAMGLHSFLAKNHIEYGSPESVEFTDIYFMLMNYW 498 Query: 694 AISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRL 744 + S +A+ER + F+ S + G + + L+ E+ + + + S Sbjct: 499 TLVESNNIARERQTTFVGFEKSKYADGSYFDKYVTGQFVPKSDLVKELFKDHFIPQAS-- 556 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVN 803 W+ L++ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEGRQEKKIGKIYYP- 615 Query: 804 SFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRR 863 + D + +A+++D +I+ + Sbjct: 616 ------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAAA 645 Query: 864 QKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 646 TQHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|254243048|ref|ZP_04936370.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192] gi|126196426|gb|EAZ60489.1| hypothetical protein PA2G_03837 [Pseudomonas aeruginosa 2192] Length = 734 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 146/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + +E F L + + + N+G + +C ++ Sbjct: 68 WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV EF+ ++ + R N + I D FM+ V Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242 Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P V D + L +E+ I + +R KV+ ++ A L Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNALVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 L + D +R + + SR EL + + G R ++ +IA Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ L+ E ++ E +L Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 586 Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + + D L TA + P ++ + QKW+D + S + + Sbjct: 587 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 646 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + IYR AW GLK R Sbjct: 647 YPFEDFKDIYRYAWHQGLKGCTTFR 671 >gi|307706627|ref|ZP_07643434.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK321] gi|307618082|gb|EFN97242.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK321] Length = 719 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 159/715 (22%), Positives = 282/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L LA +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + I + E+ ++ + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYITGEFVPKSDRVKELFKDVFIPSAA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|116053647|ref|YP_793974.1| putative ribonucleotide reductase [Pseudomonas aeruginosa UCBPP-PA14] gi|218894600|ref|YP_002443470.1| NrdJa [Pseudomonas aeruginosa LESB58] gi|254237823|ref|ZP_04931146.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719] gi|115588868|gb|ABJ14883.1| putative ribonucleotide reductase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169754|gb|EAZ55265.1| hypothetical protein PACG_03919 [Pseudomonas aeruginosa C3719] gi|218774829|emb|CAW30647.1| NrdJa [Pseudomonas aeruginosa LESB58] Length = 734 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + +E F L + + + N+G + +C ++ Sbjct: 68 WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV EF+ ++ + R N + I D FM+ V Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242 Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P V D + + +E+ I + +R KV+ ++ A L Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 L + D +R + + SR EL + + G R ++ +IA Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ L+ E ++ E +L Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 586 Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + + D L TA + P ++ + QKW+D + S + + Sbjct: 587 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 646 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + IYR AW GLK R Sbjct: 647 YPFEDFKDIYRYAWHQGLKGCTTFR 671 >gi|295397109|ref|ZP_06807220.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] gi|294974651|gb|EFG50367.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] Length = 732 Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats. Identities = 165/723 (22%), Positives = 291/723 (40%), Gaps = 87/723 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHES----MMDFDLVYLANDL 285 +++ ++ +A E +F E+ + + ++ + Sbjct: 31 KKIQLNKDREAVRAYFLEYVNPNTVFFHTLEEKLQYLVDNDYIEEGFLNKYSFNFIQSLF 90 Query: 286 KYERDFAF---EYLGLQILYDRYFLHINGSR--IEMPQAFFMRVAMGLALKETEKEKRAV 340 + F ++G Y +Y L N ++ +E + R+A E A Sbjct: 91 DHLYSHKFRFKSFMGAYKFYTQYALKTNDNKRFLERYED---RIAFTALYLADGDEDLAW 147 Query: 341 EFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGG 399 +TPT N+G + ++ SCFL V D++ I A+ + L+K GG Sbjct: 148 HIAEEHIEHRLQMATPTFLNAGKKRRGEMVSCFLIDVQDNMESIGRAVNSSLQLSKRGGG 207 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G + + +R GA I G GV+P +K+ D NQ G+R GA YL +H DV Sbjct: 208 VGVNLSNLREAGAAIKGIENAGSGVVPVMKLLEDAFSYANQLGQRNGAGVVYLNAFHPDV 267 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EFL +K D++ R ++ +PD + + + N LFSP +V ++ + Sbjct: 268 YEFLSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFSPYDVERIYGE-PFGYV 326 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 E+YE EIK ++ I+A L +++ + E+G+P+I D N G + Sbjct: 327 DITEHYEDMVANKEIKKYK-INARELEQEISRLQQESGYPYIMNVDTANK--ENPINGTI 383 Query: 580 HSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 SNLC+EI N V S NL + + + TAVR L Sbjct: 384 TMSNLCSEIMQVQKPSTLNEDLTYKEVGLDISCNLASTNITEMLKTNDFEKAVDTAVRAL 443 Query: 633 DNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D+ + ++ N + +IGLG MG +AL I Y S EA+E+ D + Sbjct: 444 TAVSDMTSIQAVPSVERGNSAYNSIGLGAMGLHTALATNQIHYGSAEALELTDAYFMALR 503 Query: 692 FHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI-----------GLLAEVRDELAMN 739 ++A+ S ++A+ER ++ F S + G + + +A++ D + + Sbjct: 504 YYALKTSNQIAKERGESFFEFDQSAYADGSYIRERYIDNQVPFVFHSEKVAKLFDHIHIP 563 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGD 798 W L + + G+ N+ + +APT +I+ I S SI P + + G Sbjct: 564 TP--DDWAALNQAIMADGLYNAYLLTVAPTGSISYINEASSSIHPIVHLIENRQETNIGS 621 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 +L N+ +I + +A+E D +I+ Sbjct: 622 MFYPAPYLDND--------------------TIQ-----------YYKSAYETDMRQVID 650 Query: 859 SASRRQKWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYY 902 + + QK IDQ SL L++ + + L+ + AW G+K+ YY Sbjct: 651 TYATAQKHIDQGMSLTLFMQSTIPRGLYEWKNGNTDKMTTRDLNRLRNYAWAKGIKSIYY 710 Query: 903 LRS 905 +R+ Sbjct: 711 VRT 713 >gi|325694008|gb|EGD35926.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK150] Length = 719 Score = 294 bits (752), Expect = 6e-77, Method: Composition-based stats. Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVLNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|308183793|ref|YP_003927925.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047719|gb|ADO00262.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 636 Score = 294 bits (752), Expect = 6e-77, Method: Composition-based stats. Identities = 166/701 (23%), Positives = 275/701 (39%), Gaps = 104/701 (14%) Query: 289 RDFAF---EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 RD F +LG Y +Y + N + + + F RV E+ A + + Sbjct: 2 RDHHFRFRSFLGAYKFYTQYAMKTNDGQQFL-EDFVDRVVFNALYLANGDEQLANDIADE 60 Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 L S + +TPT N+G + ++ SCFL V D + I + L++ GG+G + Sbjct: 61 LISQRYQPATPTFLNAGKKRRGEMVSCFLIDVADSMLSIGRGVNSALQLSRIGGGVGVNL 120 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R G I + S GV+P +K+ D+ NQ G+R GA YL +H D+ FLD Sbjct: 121 SNLRASGDPIKQISNASSGVVPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHPDILHFLD 180 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ +PD + + + N LFSP +V + + + Sbjct: 181 TKKENADEKIRVKTLSLGLIVPDKYYELLKTNEPMYLFSPYDVEREYRT-PFAYIDITKE 239 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y A IK +A L +K+ + E+G+P+I D N +P G + SNL Sbjct: 240 YNNMAANPNIKKS-VFNARKLEQKISQLQQESGYPYILNIDTANQTNPV--DGKIIMSNL 296 Query: 585 CTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 C+EI + S NL + N D ++ AVR L V D Sbjct: 297 CSEILQPQEPSKLDDDLSYKTIGTDISCNLGSTNIMNMIDSPDFGHSVEVAVRALTLVTD 356 Query: 638 -INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 + + K N + IGLG MG +AL I Y SPEA+E D ++++++ Sbjct: 357 TTDVKEVPTVKHGNELYHTIGLGAMGLHTALARHQIEYGSPEALEFTDAYFLALNYYSLV 416 Query: 697 ASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAE------VRDELAMNRTSRLPWDEL 749 S +A+E ++ F S + G + + + + + S W L Sbjct: 417 TSNRIARERHETFAKFDQSKYADGSYFDQYLNADFKFKSTKVAKIFKNIKLPSVTDWKAL 476 Query: 750 KKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVN 808 K+ V T G+ + N +A+AP +I+ + S S+ P Q + + N G +L N Sbjct: 477 KQAVITGGLYHRNRLAVAPNGSISYVNETSASLHPITQLVEQRQENKVGSIFYPAPYLSN 536 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + A++ID +I++ + QK ID Sbjct: 537 -------------------------------ETLPYYTPAYDIDQRKIIDTYAVAQKHID 565 Query: 869 QAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q SL L++ + + L+ + AW G+K+ YY+R+ Sbjct: 566 QGMSLTLFMRSVLKPDLYEWKDNNNLKMTTRDLNRLRNYAWTKGIKSLYYIRT------- 618 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T N ECE C Sbjct: 619 -FTEDDEIKTAN------------------------ECESC 634 >gi|116620784|ref|YP_822940.1| vitamin B12-dependent ribonucleotide reductase [Candidatus Solibacter usitatus Ellin6076] gi|116223946|gb|ABJ82655.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Candidatus Solibacter usitatus Ellin6076] Length = 944 Score = 294 bits (752), Expect = 6e-77, Method: Composition-based stats. Identities = 125/635 (19%), Positives = 237/635 (37%), Gaps = 38/635 (5%) Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLS 369 R+E+ + A + E ++ T +G PQ S Sbjct: 130 ENFRMELAHLMLTQKACFNS--PVWFNVGVKETRGYGWNYDERVGKVTKLETGVMRPQCS 187 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 +CF+ +V D L I + ML K+ G G++ + +R A + G++ G + F+K Sbjct: 188 ACFIVSVKDSLESILDLAKTEGMLFKWGSGTGSNLSALREEDA-VLSGGGRASGPLSFMK 246 Query: 430 VANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 + A + GGK R+ A L H DV++F+ + + A + + Sbjct: 247 GFDAFAGVIKSGGKTRRAAKMVILNVDHPDVDKFIWC---------KAKEEKKAYTLVEA 297 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRG--EIKVFRKISAVALW 546 ++ + EF A + +G + ++ A L Sbjct: 298 GYDSSLDGEAYSSIFFQNA-NNSVRASDEFMDAAMRDDDWWTKGVFTGQPVKRYKAKDLM 356 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 R++ + G P + F N P ++ +++SN C+E + + CNL S+N Sbjct: 357 RQIAEATHQCGDPGMQFDTTVNRWHPCKNTARINASNPCSEYMF----LDDSACNLSSLN 412 Query: 607 LLAHFANN-QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQS 665 L+ + + QFD + + T + + ++D + EK +++H R +GLG + Sbjct: 413 LMKYVGPDGQFDVEAFRHAVDTMILAQEIIVDNASYPTEKIGQNSHDFRPLGLGFANLGA 472 Query: 666 ALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV---FP 722 L + +PY S + A + A S +A+ G + + + Sbjct: 473 LLMSMGVPYDSDHGRDFAGAITAVMCGQAYLTSSRVAEAVGPFEGYAANEDPFLEVIRMH 532 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQS 781 DS+ + A+ ++ WD + + G RN+ IAPT TI + + Sbjct: 533 RDSVKRINGNHLPTALMSGAQECWDYAYESGRRSGYRNAQVTVIAPTGTIGFMMDCDTTG 592 Query: 782 IDPSYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH---DGSIGNIERI 837 I+P + Y K G +VN+ + L + + + H G+I + Sbjct: 593 IEPDLALIKYKKLVGGGVIKIVNNTVPAALVKLG-YTPEQAEKIVTHIDSTGTIEGAPDL 651 Query: 838 PDDLKKIHATAF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIY 889 + + +F I M + + Q +I A S + + E + +++ Y Sbjct: 652 KPEHLAVFDCSFRPQNGSRSIHYMGHVRMMAAVQPFISGAISKTINMPEECTVEEIMSAY 711 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLN 924 ++W +GLK R S S+ G K N Sbjct: 712 TESWKLGLKAVAIYRDNSKRVQPLSSGSGKGEKKN 746 >gi|324990558|gb|EGC22494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK353] Length = 719 Score = 294 bits (752), Expect = 6e-77, Method: Composition-based stats. Identities = 160/718 (22%), Positives = 278/718 (38%), Gaps = 84/718 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNL 345 + ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQGFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANE 145 Query: 346 LSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDW 404 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 146 IIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISL 205 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 206 SNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLS 265 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 266 TKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITEK 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I + I A L ++ + E+G+P++ D N G + SNL Sbjct: 325 YDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSNL 381 Query: 585 CTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI CNLGS N++ + +IRT R L Sbjct: 382 CSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + N GLG MG S L I Y S EAVE ++ Sbjct: 437 TFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMN 496 Query: 692 FHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 + + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 497 YWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA- 555 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 -EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 + + + +A+++D +I+ + Sbjct: 615 P-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYA 643 Query: 862 RRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 644 AATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|325697178|gb|EGD39065.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK160] Length = 719 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFAKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPQGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|107104599|ref|ZP_01368517.1| hypothetical protein PaerPA_01005678 [Pseudomonas aeruginosa PACS2] Length = 714 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + +E F L + + + N+G + +C ++ Sbjct: 48 WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 106 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 107 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 166 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV EF+ ++ + R N + I D FM+ V Sbjct: 167 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 222 Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P V D + + +E+ I + +R KV+ ++ A L Sbjct: 223 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 338 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 L + D +R + + SR EL + + G R ++ +IA Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 518 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ L+ E ++ E +L Sbjct: 519 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 566 Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + + D L TA + P ++ + QKW+D + S + + Sbjct: 567 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 626 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + IYR AW GLK R Sbjct: 627 YPFEDFKDIYRYAWHQGLKGCTTFR 651 >gi|294623133|ref|ZP_06702019.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium U0317] gi|291597502|gb|EFF28667.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium U0317] Length = 719 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALVAFFEENVKPNTMTFLSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVNITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYAMAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ + A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNILRHYAFHKGIKSIYYVRT 701 >gi|324993304|gb|EGC25224.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK405] gi|324995392|gb|EGC27304.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK678] gi|327461575|gb|EGF07906.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1] gi|327473299|gb|EGF18719.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK408] Length = 719 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKINYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|126457217|ref|YP_001074685.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106a] gi|242311219|ref|ZP_04810236.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106b] gi|126230985|gb|ABN94398.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106a] gi|242134458|gb|EES20861.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia pseudomallei 1106b] Length = 844 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 140/655 (21%), Positives = 254/655 (38%), Gaps = 82/655 (12%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE--FYNLLSSFHFM 352 + +L ++Y + RVA G+A E + + +E F L Sbjct: 14 QFSIDVLLEKYAKGEER----TVDDIYRRVARGVAQAEPPELRDEIEARFVEHLQRGALG 69 Query: 353 CSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGGLGNDW 404 L +CF+ V D + G I+ AL + A + GG+G ++ Sbjct: 70 AGRIMSAAGSPIAATLINCFVQPVGDCIQGVDERGLPGIYVALLQAAETMRRGGGVGYNF 129 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 + +R GA++H T + G ++ V + + V G R+GA A L+ H D+ EF++ Sbjct: 130 SAIRPRGAYVHSTGSSASGPCSYIDVFDASCRTVESAGARRGAQMAVLDCDHPDLLEFIE 189 Query: 465 LRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYEN 524 + + G R ++ N + + D FM V Q+ W L E S G Sbjct: 190 AKHSKG----RWNNFNISVAVTDAFMNAVEQDLPWQLVHRAEPSPALRAAGDL------- 238 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 + + V+ + A A+W K++ ++ P + F N + + + + ++N Sbjct: 239 ---RRRDDGMWVYAERRARAIWEKIMRSTYDVAEPGVVFISKMNDDNNLRAIESIRATNP 295 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANNQ---------FDYDKLASTIRTAVRVLDNV 635 C E L + CNLG +NL + FD+ LA RT VR LD+V Sbjct: 296 CGEQPLPAY----GCCNLGPLNLTRFVIDPFAELTGGESAFDWRALAERTRTQVRFLDDV 351 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 +D+ + + + R IG+G G L +L + Y S + + A + A Sbjct: 352 LDVTLWPLPEQRHEAQQKRRIGIGFTGLGDTLVMLGLRYDSQQGRDFAARVGREMRDAAY 411 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKT 755 ASVELA ERGA++ F + + L + +++++ ++ Sbjct: 412 RASVELALERGAFALFDANRY-------------------LEEGTFASRLPEDIREAIRR 452 Query: 756 IGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR 813 G+RNS+ ++IAPT T++ S I+P++ Y ++ + + + ++ Sbjct: 453 DGIRNSHLLSIAPTGTVSLAFADNASNGIEPAFSWTYQRTKI-----------MADGSRQ 501 Query: 814 DLWDEAMISDLKYH-DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 E L G +G + +A ++ + + Q +ID + S Sbjct: 502 TFAVEDYAYRLYRELGGDVGALP-------ACFVSALQMSAHDHLAMMAAVQPYIDTSIS 554 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV 926 + + + + +Y AW GLK R T + D A Sbjct: 555 KTVNVPADYPFDDFESLYFDAWKSGLKGLATYRPNETLGAVLHTSEPDDALEEAD 609 >gi|293570203|ref|ZP_06681273.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] gi|291609716|gb|EFF38976.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E980] Length = 718 Score = 294 bits (751), Expect = 6e-77, Method: Composition-based stats. Identities = 150/691 (21%), Positives = 268/691 (38%), Gaps = 76/691 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHI 309 E I + + + ++ + ++ F ++ Y++Y + Sbjct: 48 DEKLDYLISHDYIDESVLSIYGENNREFVKKLFIFAYNYGFKFKSFMAAYKFYNQYAMKT 107 Query: 310 NGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QL 368 N + V L L ++ L S + +TPT N+G + ++ Sbjct: 108 NDLNYYLENFEDRAVFNALYLANGDRNLAHK-ILEELISQRYQPATPTFLNAGKKRRGEM 166 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL + D + I + L++ GG+G + + +R G+ I S GV+P + Sbjct: 167 VSCFLIDINDSMLSIGRNINSALQLSRIGGGVGVNLSNLRATGSPIKEIENASSGVLPVM 226 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G+R GA YL +H D+ EFL +K D++ R ++ +PD Sbjct: 227 KLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEFLSTKKENADEKIRVKTLSLGLVVPDK 286 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWR 547 + + + N LF+P + +YG F E ++ + I+A L + Sbjct: 287 YYELLKTNEPMCLFNP---YHVERVYGIPFSYVDLTKEYDTMVDNGEIEKTVINARELEQ 343 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN-------SSSEETAVC 600 ++ + E+G+P+I D N +P G + SNLC+EI V Sbjct: 344 EISRLQQESGYPYILNIDTANRTNPV--KGKIIMSNLCSEILQPQEPSILNPDLSYKKVG 401 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLG 659 S NL + N + +I A+R L + D + N + IGLG Sbjct: 402 TDISCNLGSMNMVNLMEAKDFGKSIEYAIRALTTITDRGAISEVPTVANGNSLYHTIGLG 461 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQ 718 MG + L L I Y S EA+E D ++++++ AS ++A E + +F+ S + Sbjct: 462 AMGLHTVLALNSIDYESDEALEFVDAFFLAMNYYSLKASHQIAIEKNETFHNFEYSRYAD 521 Query: 719 GVFPIDSIGLLAEVRDELAMNRTSR-------LPWDELKKRVKTIGMRNSNCMAIAPTAT 771 G + D + + W LK+ V G+ + N +AIAP + Sbjct: 522 GSY-FDYYLAKEFHFTSEKVAKIFENILLPTIEDWQLLKENVMKDGLYHRNRLAIAPNGS 580 Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I S S+ P Q + + G +L N Sbjct: 581 ISYINETSASLHPITQLIENRQEKKVGSIFYPAPYLSN---------------------- 618 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP---------- 880 + + TA+ +D +I+ ++ Q+ IDQ SL L++ Sbjct: 619 ---------KTLRYYKTAYNMDQRKIIDIYAKAQQHIDQGMSLTLFMRSVLPEGIYEWKK 669 Query: 881 ------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + L+ + AW G+K+ YY+R+ Sbjct: 670 QGSLKLTTRDLNRLRNYAWTKGIKSLYYVRT 700 >gi|332522761|ref|ZP_08399013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus porcinus str. Jelinkova 176] gi|332314025|gb|EGJ27010.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus porcinus str. Jelinkova 176] Length = 719 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 166/718 (23%), Positives = 282/718 (39%), Gaps = 90/718 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + IE + + LA LK E Sbjct: 32 KEALKAFFKENVLPNTKQFSSITDK-VTFLIENDYIETAFIQKYRPEFIEELAAILKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + M A+ A E+ A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGDLYLESIEDRVMFNALYYA---DGNEELAKDLAIEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524 K D++ R ++ +PD F + N LFSP D+ YG F E Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSP---YDIEREYGIAFNYIDITEK 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ +I + + A L ++ + E+G+P+I D N +P G + SNL Sbjct: 325 YDELVANPKITKTK-LRARDLETEISKLQQESGYPYIINIDTANKTNPI--DGKIIMSNL 381 Query: 585 CTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI CNLGS N+L + +I+ R L Sbjct: 382 CSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + K N GLG MG S L HI Y SPE+VE D ++ Sbjct: 437 TYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESVEFTDIYFMLMN 496 Query: 692 FHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 + + S +A+E + F+ S + G + + L+ E+ + + S Sbjct: 497 YWTLVESNNIARERHTTFVGFEKSKYADGTYFDKYVTGEFVPKSDLVKELFKSHFIPQAS 556 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801 W+ L++ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 --DWEALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 + D + +A+++D +I+ + Sbjct: 615 P-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYA 643 Query: 862 RRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 644 AATQHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|145300302|ref|YP_001143143.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142853074|gb|ABO91395.1| ribonucleotide reductase, alpha subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 715 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 141/651 (21%), Positives = 258/651 (39%), Gaps = 56/651 (8%) Query: 293 FEYLGLQILYDRYFLH-INGSRIE-MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 + L+I +Y L +G+ I+ + RVA LA +E E + F L + Sbjct: 19 LQETSLEIWDSKYRLKSKDGAPIDGSIDETYQRVARALAEQEREPDAWYEPFLWALRNGA 78 Query: 351 FMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + N+G + +C ++ T+ D + I G + E + K G+G D++ Sbjct: 79 I-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYDFS 137 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA + G + G + F+ + + V+ G R+GA ++ H DV EF+ Sbjct: 138 TLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVIEFIQA 197 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----------DLHDLYG 515 ++ + R N + I + F+K V ++A W+L P D ++ Sbjct: 198 KR----EDGRLRQFNLSLLITEDFVKAVKEDAPWSLIFPYTAKEVEQDGIGLDDPEVVFW 253 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 ++ + KV++ + A LW ++T ++ P D N + Sbjct: 254 ADWPNKEGVVINALGQVACKVYKTMPARKLWNVIMTSTYDYAEPGFILIDKVNQMNNNWF 313 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630 + ++N C E L C LGS+NL + FD+ + R Sbjct: 314 CEEIRATNPCGEQPLPPY----GACLLGSVNLTRFVRDPFTEQAAFDWQGFRKVVAIFTR 369 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNV++IN + K ++ R G+G +G S L +L I Y S +V ++ + + Sbjct: 370 MLDNVVEINQLPLAKQREEITAKRRHGMGFLGLGSTLTMLQIKYGSAASVAFTEQVSQEL 429 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVRDELAMNRTSR 743 + S+ LA+E+G + G D I L +V+ ++ R SR Sbjct: 430 AMTGWQESLRLAKEKGVAPIMEQEFEVTGKMLRLHPEMAADGIKLGDKVKGKVLHARYSR 489 Query: 744 LPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795 L + +G R ++ +IAPT TI+ S I+PS+ + Y ++ + Sbjct: 490 YMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVI 549 Query: 796 SGDFTVVNSFLVNELKQRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 + D++ ++ + G++ E L TA +I P Sbjct: 550 --------KPGKKSKESVDVYSFELLAYRELVNAGAMPYSEDDASRLPGYFITADDISPA 601 Query: 855 WLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 ++ + Q+WID + S + + ++ IY A GLK R Sbjct: 602 QHVDIQAAAQRWIDSSISKTANVPTDFPFEQFKDIYMYASDSGLKGCTTFR 652 >gi|171779439|ref|ZP_02920403.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282056|gb|EDT47487.1| hypothetical protein STRINF_01284 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 718 Score = 294 bits (751), Expect = 7e-77, Method: Composition-based stats. Identities = 154/717 (21%), Positives = 273/717 (38%), Gaps = 77/717 (10%) Query: 227 KLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 +E L K + + + ++ ++ ++ Sbjct: 23 HYDKEALYEYLNTEIKNNLKSFDNIDAKLNYLIAHDYIEESIIDS-YGKNSRAFVKELFD 81 Query: 287 YERDFAF---EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + ++ F ++ Y++Y + N S+ + V L L ++ Sbjct: 82 FAYNYGFEFKSFMAAYKFYNQYAMKTNDSKYYLENFEDRAVFNALYLANGDRNLAHK-IL 140 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 L S + +TPT N+G + ++ SCFL + D + I + L++ GG+G Sbjct: 141 EELISQRYQPATPTFLNAGKKRRGEMVSCFLIDIEDSMLSIGRNINSALQLSRIGGGVGV 200 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 + + +R G+ I S GV+P +K+ D+ NQ G+R GA YL +H D+ EF Sbjct: 201 NLSNLRATGSPIKEIENASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILEF 260 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 L +K D++ R ++ +PD + + + N LF+P + +YG F Sbjct: 261 LSTKKENADEKIRVKTLSLGLVVPDKYYELLKTNEPMYLFNP---YHVERVYGIPFSYVD 317 Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E ++ + I+A L +++ + E+G+P+I D N +P G + Sbjct: 318 LTKEYDTMVDNDEIEKTVINARELEQEISRLQQESGYPYILNIDTANRTNPV--KGKIIM 375 Query: 582 SNLCTEITLN-------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 SNLC+EI V S NL + N +I A+R L Sbjct: 376 SNLCSEILQPQEPSILNPDLSYKKVGTDISCNLGSMNMVNLIKSKDFGKSIEYAIRALTT 435 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + N + IGLG MG + L L I Y S EA+E D ++++ Sbjct: 436 VTDRGAISEVPTVANGNSLYHTIGLGAMGLHTVLALNGIDYESDEALEFVDAFFLAMNYY 495 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR-------LP 745 ++ AS ++A E + F+ S + G D + + Sbjct: 496 SLKASHQIAVEKNETFHDFENSRYADG-SHFDYYLAKEFHFTSEKVAKIFENILLPTIED 554 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W LK+ V G+ + N +AIAP +I+ I S S+ P Q + + G Sbjct: 555 WQLLKEDVMKDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQEKKVGSIFYPAP 614 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L N K + TA+ +D +I+ ++ Q Sbjct: 615 YLSN-------------------------------KTLKYYKTAYNMDQRKIIDIYAKAQ 643 Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + IDQ SL L++ + + L+ + AW G+K+ YY+R+ Sbjct: 644 QHIDQGMSLTLFMRSVLPEGIYEWKKQGSSKLTTRDLNRLRNYAWTKGIKSLYYVRT 700 >gi|315231895|ref|YP_004072331.1| ribonucleotide reductase of class II, coenzyme B12-dependent [Thermococcus barophilus MP] gi|315184923|gb|ADT85108.1| ribonucleotide reductase of class II, coenzyme B12-dependent [Thermococcus barophilus MP] Length = 1042 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 104/417 (24%), Positives = 187/417 (44%), Gaps = 24/417 (5%) Query: 533 EIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS 592 E+K + + ++++ + E ++ ++V S C E L Sbjct: 562 ELKNIKVGDCIEVFKEGCKKVVEVASVGNQLVYTLTMKEVHEYVANSIISRNCGEEPLY- 620 Query: 593 SSEETAVCNLGSINLLAHFAN-----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK 647 E CNL SINL FD+D+ A I+ + LDN ID+N + + Sbjct: 621 ---EYESCNLASINLAKFVKYDDEGKPYFDWDEYAYVIQKVAKYLDNSIDVNKFPLPEID 677 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA 707 + R IG+G+MG AL L IPY S E + ++ E+++F+A SVE A++RG Sbjct: 678 YNTKLTRRIGVGMMGLADALFKLGIPYNSKEGFDFMRKATEYLTFYAYKYSVEAAKKRGT 737 Query: 708 YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIA 767 + + S + +G P++ LPWDEL + +K G+RN+ Sbjct: 738 FPLYDKSDYPEGKLPVE----------GFYHREIWNLPWDELAEEIKKYGVRNAMVTTCP 787 Query: 768 PTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 PT +++ I S I+P + +Y KS G+F V+ ELK+R L+ + +++ + + Sbjct: 788 PTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLYSDELLAKISNN 847 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLD 886 GS+ +E IP+D++++ TA ++ + I + + Q W+ + S + + ++ + + + Sbjct: 848 YGSVQGLEEIPEDMQRVFVTAMDVHWLDHILAQASIQLWLTDSASKTINMPNDATVEDVK 907 Query: 887 FIYRQAWLMGLKTTYYLRSRSAT----SVEKSTLKGVDGKLNAVPVTDPNSSTHSLG 939 Y A+ +G K R S + SVE K V K + + Sbjct: 908 AAYLLAYKLGCKGVTVYRDGSLSVQVYSVEGEKKKRVPAKPSEYAKSILKEIVEKEP 964 Score = 257 bits (656), Expect = 8e-66, Method: Composition-based stats. Identities = 110/551 (19%), Positives = 209/551 (37%), Gaps = 115/551 (20%) Query: 30 QVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGASRSIRVQDIIKNLTEQTVTRLLQHNKS 89 +V+KR+G + FD +I AI +A V +R + ++ + + V R+ Sbjct: 5 KVMKRDGRIVPFDEGRIRWAIQRAMWEV-------GVRDEKLLDKVVKDVVGRI-NELYD 56 Query: 90 ALIVHIEDIQDQVECSLMQSGHHKITREYVLYREERSDVRAAQSHSKSDAPIAPKLKIMM 149 I HIE+IQD VE LM++G + + Y+LYR++++++R + + Sbjct: 57 GKIPHIENIQDIVELELMRNGLFDVAKAYILYRKKKAEIREEKKKILNKDK--------- 107 Query: 150 DDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALIFSSRTL 209 L ++ + + + +SR L Sbjct: 108 -----------------------LDEIDKRF----------------SINALRVLASRYL 128 Query: 210 IEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLL 269 ++ E + R L E++ + + + F + ++ Sbjct: 129 MKNEEGKIIESPRELFERV------AILAVIPDLLYDDRVFSKEGGFAQDLKRV------ 176 Query: 270 HESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVA---- 325 L L +G L +F E+ + M+V+ Sbjct: 177 --DYYREHLDEFDKKL---------SIGRFKLNKYHFERFLSLYQELAEKGQMKVSIDEI 225 Query: 326 --MGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGI 383 M + EK E++ L+++ FM +TP L N+G LS+CF+ + DD+ I Sbjct: 226 VKMLEDGAFDKYEKEIEEYFRLMTNQIFMPNTPALINAGRPLGMLSACFVVPIEDDMESI 285 Query: 384 FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK 443 A + AM+ K GG G +++ +R G + T G + G + F+ + + + + QGG Sbjct: 286 MKAAHDVAMIQKMGGGTGVNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGV 345 Query: 444 RKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLF 502 R+GA LE WH D+E+F+ + KN G + +++ W + F + + + + L Sbjct: 346 RRGANMGILEVWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGRKYPLI 403 Query: 503 SPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWIT 562 +P K R++ AL+ ++ M + P + Sbjct: 404 NPRT---------------------------GKKVREVDPKALFEELAYMAWAKADPGVV 436 Query: 563 FKDPCNIRSPQ 573 F D N R+ Sbjct: 437 FFDVINRRNVL 447 >gi|225854652|ref|YP_002736164.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae JJA] gi|225723895|gb|ACO19748.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae JJA] Length = 719 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L LA +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WTELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|332362637|gb|EGJ40435.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK49] Length = 719 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + + + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIQLYSPEYIEELTTFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDHGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFDNFEKSDYANGTYFDKYLTDEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|256848139|ref|ZP_05553583.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715199|gb|EEU30176.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus coleohominis 101-4-CHN] Length = 723 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 158/709 (22%), Positives = 276/709 (38%), Gaps = 70/709 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 + L K + + E I+ + + L + LK + Sbjct: 34 KLALDDFIKNNVEPNTKHFASV-QERLTWLIDHDYLEEGFIRQYRNEFIDKLYDYLKSKH 92 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y +Y L N + RVAM E A++ + L + Sbjct: 93 FHFHSFMAAYKFYAQYALRTNDKEYYLENY-IDRVAMNALYLANGNEDLAMDLAHELINQ 151 Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+ R + SCF D++ I + L+K GG+G + T +R Sbjct: 152 RYQPATPTFLNTGRKRRGEFVSCFEIQTTDNMNTIGRTINSALQLSKIGGGVGINLTNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G + GV+P +K+ D NQ G+R+GA YL +H D+ EFL +K Sbjct: 212 EAGAPIKKIKGAASGVVPVMKLLEDAFSYSNQLGQRQGAGVVYLSVFHPDIVEFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + V + LFSP +V ++ + + Y+ Sbjct: 272 NADEKIRIKTLSLGVTVPDKFYELVENDEDMYLFSPYDVERVYGE-PFAYVDITKEYDNL 330 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 EI +KI+A L ++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 331 VANDEITK-KKINARDLEDEISKLQQESGYPYIVNIDTENRANPI--DGKIIMSNLCSEI 387 Query: 589 TL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC- 640 N + S NL + N + +IR R L ++ DI Sbjct: 388 AQVQKPSVVNDDQTYQELGTDVSCNLGSTNIANMMETPDFGKSIRAITRGLTHISDIENL 447 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + K+ N AIGLG MG L HI Y SP A+E +++ + AS E Sbjct: 448 DIVPSIKRGNARSHAIGLGAMGLHGYLAKHHIQYGSPVALEFTSVYFMLLNYWTLVASHE 507 Query: 701 LAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSR------LPWDELKKRV 753 +A E + ++ F S + G + I + E + W +LK + Sbjct: 508 IAVERQETFADFAKSAYADGSYFDKYITKDWGPQSEAVQELFAGIFIPSIDDWKQLKAAI 567 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812 G+ N+ +A+AP + + I + S+ P + + M G +L N+ Sbjct: 568 MKDGIYNAYRLAVAPNGSTSYIGDSTSSLQPIINKIEERQEKMIGKIYYPAPYLSND--- 624 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +A++ D +I++ + Q+ +DQ+ S Sbjct: 625 ----------------------------TMPYYKSAYDTDMRSVIDTYAAAQQHVDQSLS 656 Query: 873 LNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + L++ + + L+ + A+ G+K+ YY+R+ Sbjct: 657 MTLFMRSTIPEGMYEWKDGRTDKMTTRDLNILRHYAYQKGIKSIYYIRT 705 >gi|145639186|ref|ZP_01794793.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittII] gi|145271748|gb|EDK11658.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus influenzae PittII] Length = 504 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 124/512 (24%), Positives = 200/512 (39%), Gaps = 27/512 (5%) Query: 144 KLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETALI 203 L + DGT N ++ ++ A GL +VS V ++ Y+G+ SD+ +I Sbjct: 4 SLMVTKRDGTQEQINLDKIHRVITWAAEGLDNVSVSQVELRSHIQFYEGIRTSDIHETII 63 Query: 204 FSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 ++ LI K+ P+Y + AR + LR++ ++ + + Sbjct: 64 KAAADLISKDSPDYQYLAARLAIFHLRKKAYGHFDPPRL-----------YDHVKKLVRM 112 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAF 320 + L + + + + + RD F Y ++ L +Y + G E Q Sbjct: 113 EKYDQALLDDYTREEWDTMDGFIDHWRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFL 172 Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPD 378 ++ V+ L + + FY+ S+F TP + T Q SSC L D Sbjct: 173 YLLVSASLFSKYPKETRLDYVKRFYDATSTFKISLPTPIMAGVRTPTRQFSSCVLIECDD 232 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I G+G + +R LG+ I G G IPF K + Sbjct: 233 SLDSINATASAIVKYVSQRAGIGINAGAIRALGSEIRGGEAFHTGCIPFYKYFQTAVKSC 292 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +QGG R GA Y WH++ E L L+ N G + R M+ + L +R+ + Sbjct: 293 SQGGVRGGAATLYYPIWHLEAENLLVLKNNRGVEDNRVRHMDYGVQLNKLMYQRLIKGGE 352 Query: 499 WTLFSPDEVSDLHDLY---GKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 TLFSP +V L++ + +FE Y YE+ + R + AV ++ ++ Sbjct: 353 ITLFSPSDVPGLYEAFFADQDKFEELYVKYEQDPTIRK----RTVKAVEIFSLLMQERAS 408 Query: 556 TGHPWITFKDPCNIRSPQQHV-GVVHSSNLCTEITLNSSSEETAVCNLGSINLLA---HF 611 TG +I D CN SP V SNLC EI L + + G I L Sbjct: 409 TGRIYIQNVDHCNTHSPFNPQVAPVRQSNLCLEIALPTKPLQHINDENGEIALCTLSAFN 468 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + D+L AVR LD ++D Sbjct: 469 LGKIENLDELEELADLAVRSLDALLDYQVPCC 500 >gi|322387900|ref|ZP_08061507.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus infantis ATCC 700779] gi|321141173|gb|EFX36671.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus infantis ATCC 700779] Length = 719 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 158/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + I++ + L L +K + Sbjct: 32 KEALDAFFKENVVPNSMVFDSITDK-IDYLIKQDYIETAFIKKYRPEFLEELYQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A++ N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLLNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + E+ + + + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYANGTYFDKYTSGQFVPKSDRVKELFEGIFIPSAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|46519448|gb|AAT00096.1| JM119 [Macaca fuscata rhadinovirus] Length = 788 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 168/753 (22%), Positives = 290/753 (38%), Gaps = 90/753 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLH 308 +Y + E+ + L L D K + + YL YD Y L Sbjct: 75 KDYLTVFGEKLSDEVREFMLKHEAALDGLLQDFKQSKAYANLVNCGYLSAVRFYDTYVLR 134 Query: 309 INGS--RIEMPQAFFMRVAMGL--------ALKETEKEKRAVEF-----------YNLLS 347 +GS E FMRVA+ + L++T + E ++ +S Sbjct: 135 THGSSPIFESVAQMFMRVAVFVACQCIKFPCLRKTLRHLVQSETELDEMYLVGYAFHYIS 194 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSGGLGNDWT 405 S C+TP L ++G R QLSSCF+ + +E + L G+G D + Sbjct: 195 SQIVCCATPVLRSAGLRGGQLSSCFILKPSMATENKTLKALHEEMSPLLASKSGVGIDVS 254 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 + + + LK+ N N R AY+E WH + +FL+ Sbjct: 255 SFA-----------EHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNA 303 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYE 523 + + R H++ +P+LF + N W LF+P+ +L LYG EFEI Y Sbjct: 304 KMPENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEIEYN 361 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582 K + ++ ++ + +TG P++ K+ N + G ++ S Sbjct: 362 RLVAA-----GKHSSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCS 416 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-------------YDKLASTIRTAV 629 NLC EI + +VCNL +I+L + ++ L + AV Sbjct: 417 NLCAEIVQQP-EGQASVCNLANISLPKCLRPPRGKSGVEPGKGDVTFGFELLDDAVEAAV 475 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +++ I E ++ R++G+G+ G L Y E+ ++ E + Sbjct: 476 IIVNACILGGTAPTESVRRGQK-ERSMGIGVQGLADVFAELGFGYLDAESAKLDVEIFQA 534 Query: 690 ISFHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 + F A+ S E L E + ++ S QGVF + + L W+ Sbjct: 535 MYFAAVHTSHEIVLLGEGTPFHGWERSRLAQGVFHWQTWDGVKPSHPPLE-------RWE 587 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L + + G+ NS +A+ PTA + + G +++ P + N+ K + N Sbjct: 588 QLGRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFF 647 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +K DL ++ + G + + D KI TAF+ P+ +E A R ++ Sbjct: 648 KRVKPGDLRT------VRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFV 701 Query: 868 DQAQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923 DQ+QSLN +L E + + + + +GLKT YY R ++K T L Sbjct: 702 DQSQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCR------IQKQTKLNALQCL 755 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSD--TECEVCQ 954 + V + +S + C CQ Sbjct: 756 DQVVGDNTSSEGAESNRVQKADGEQAEVCLACQ 788 >gi|332365966|gb|EGJ43722.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1059] Length = 719 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 162/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + + + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ER G + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGGTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|307704818|ref|ZP_07641713.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK597] gi|307621647|gb|EFO00689.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK597] Length = 719 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 158/714 (22%), Positives = 286/714 (40%), Gaps = 82/714 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + ++ + + +F L L+ +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSIKDKINYLIDHNYIETAFIKKYRPEF-LEELSQFIKEQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A++ N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 ------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 CNLGS N++ + +IR VR L V Sbjct: 386 LQVQEPSLINDAQEYLQMGTDISCNLGSTNVVNMMTSP-----DFGRSIRAMVRALTFVT 440 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 441 DSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTL 500 Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPW 746 S +A+ERG + +F+ S + +G + I + E+ ++ + W Sbjct: 501 VESNNIARERGITFHNFEKSDYAKGSYFDKYITGEFVPKSDRVKELFKDVFIPSA--DDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 559 AELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP--- 615 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + + + +A+++D +I+ + + Sbjct: 616 ----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATE 647 Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 648 HVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|296876815|ref|ZP_06900863.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis ATCC 15912] gi|296432317|gb|EFH18116.1| ribonucleoside-diphosphate reductase [Streptococcus parasanguinis ATCC 15912] Length = 719 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 158/712 (22%), Positives = 284/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + ++ + + +F L LA +K + Sbjct: 32 KEALDAFFKENVVPNTKTFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N + GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNKLAHSFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + E+ ++ + W E Sbjct: 503 SNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPSA--EDWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|289751723|ref|ZP_06511101.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T92] gi|289692310|gb|EFD59739.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T92] Length = 733 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 162/672 (24%), Positives = 273/672 (40%), Gaps = 72/672 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 71 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686 Query: 885 LDFIYRQAWLMG 896 ++ AW G Sbjct: 687 VNKAQIYAWAQG 698 >gi|331266448|ref|YP_004326078.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis Uo5] gi|326683120|emb|CBZ00738.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis Uo5] Length = 719 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 159/712 (22%), Positives = 283/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + L L +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFLKKYRPEFLEELHQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A++ N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+++V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|295397899|ref|ZP_06807961.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] gi|294973879|gb|EFG49644.1| ribonucleotide-diphosphate reductase subunit alpha [Aerococcus viridans ATCC 11563] Length = 727 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 166/702 (23%), Positives = 286/702 (40%), Gaps = 77/702 (10%) Query: 243 ATHHEMQCLYPEYFCRYIEEGVKARLLHESMMD-FDLVYLANDLKYERDFAFEYLGLQIL 301 H ++ I+ V+ L E ++ +D ++ ++ DF F + Sbjct: 46 LEHVNPNTVFFYTLDEKIDYLVEHDYLEEGFLNLYDREFVKRLMQETYDFKFRFKSFMSA 105 Query: 302 YDRYFL----HINGSRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTP 356 Y Y +G R E + R+ E+ A + + + + + +TP Sbjct: 106 YKFYTQYALKTNDGKRYLERYED---RIVFTALYLANGDEQVASDLRDEMINQRYQPATP 162 Query: 357 TLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIH 415 T N+ R +L SCFL DD+ I + L++ GG+G + T +R G I Sbjct: 163 TFLNAGRKRRGELVSCFLIQATDDMNSIGRTINSALQLSRLGGGVGVNLTNIRAAGDPIK 222 Query: 416 GTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRR 475 S G+IP +K+ D+ NQ G+R GA YL +H DV FL +K D++ R Sbjct: 223 KIENASSGIIPVMKLLEDSFSYSNQLGQRNGAGAVYLSVFHPDVVSFLSAKKENADEKIR 282 Query: 476 THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK 535 ++ +PD F + ++ LFSP +V ++ + E Y+ + EIK Sbjct: 283 VKTLSLGLVVPDKFYELAEKDEMMYLFSPYDVERIYGK-PYAYVNITEEYDNLVNNPEIK 341 Query: 536 VFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL----- 590 + I A L + + E+G+P+I D N G + SNLC+EI Sbjct: 342 KSK-IRARDLEDDISKLQQESGYPYIINIDTVND--QNPIDGTIVMSNLCSEILQVQRPS 398 Query: 591 --NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAK 647 N+ + S NL + NN ++ T VR L V D + + K Sbjct: 399 IINNDQTFEELGTDISCNLGSTNINNLMHSPDFGKSVDTMVRGLTYVTDASAIDVVPSIK 458 Query: 648 KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG- 706 K N IGLG MG + L + Y SPE++E D+ ++++ + AS +A+ERG Sbjct: 459 KGNDLAHTIGLGAMGLHTYFALNEMHYGSPESIEFTDKYFLLLNYYTLVASNRIAKERGV 518 Query: 707 AYSSFKGSLWDQGVFPIDSIGL---LAEVRDELA---MNRTSRLPWDELKKRVKTIGMRN 760 + +F+ S + G + I R ++ ++ W L+ V+ G+ + Sbjct: 519 TFENFENSTYATGEYFDKYINEETTFEFERVAAQFEGIHIPTQEDWKALRAAVQEHGLYH 578 Query: 761 SNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEA 819 N +A+APT +I+ + S S+ P Q + + +G FL N Sbjct: 579 QNRLAVAPTGSISYVNETSSSLHPIIQLIEERQEKKTGKTYYPAPFLSN----------- 627 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-- 877 + +A++ID +I+ + Q+ IDQ SL L++ Sbjct: 628 --------------------KTLPYYQSAYDIDNRRIIDIYAAAQQHIDQGMSLTLFMRS 667 Query: 878 --------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + + L+ + R AW G+K+ YY+R+ Sbjct: 668 DIPAGLYPWKEGRTSKMTTRDLNILRRYAWKRGIKSIYYVRT 709 >gi|169834419|ref|YP_001694621.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae Hungary19A-6] gi|168996921|gb|ACA37533.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae Hungary19A-6] Length = 719 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 157/715 (21%), Positives = 284/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L L+ +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELSQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V +++ + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYNV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + +G + + + E+ ++ + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|134288270|ref|YP_001110433.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia vietnamiensis G4] gi|134132920|gb|ABO59630.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Burkholderia vietnamiensis G4] Length = 830 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 139/624 (22%), Positives = 240/624 (38%), Gaps = 83/624 (13%) Query: 333 TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDL-------YGIF 384 + ++ + FY L F+ + +GT L +CF+ V D + GI+ Sbjct: 52 EIRAEKEIVFYEALEHG-FVPAGRINSAAGTDIKATLINCFVQPVGDSVSEYKNGVPGIY 110 Query: 385 GALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKR 444 AL + A + GG+G D++ +R GA + GT ++ G + F+ V + + V G R Sbjct: 111 PALLQAAETMRRGGGVGYDFSEIRPAGALVSGTFSRASGPVSFMAVFDRSCSTVESAGAR 170 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 +GA L H D+ F+ + D+ + N + + D FM+ V ++ L+ Sbjct: 171 RGAQMGALRVDHPDILTFIHAK-----DKGDLTNFNISIGVTDAFMRAVERDEEVELWHA 225 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 E E V+RK A +W ++ ++ P I F Sbjct: 226 AEPHPDVK-----------QPETYRREDGTWVYRKQRAREIWEAVMLSTYDHAEPGILFI 274 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYD 619 N + V + ++N C E L C+LGS+NL FD++ Sbjct: 275 SRINEENNLHAVETIRTTNPCGEQPLPPY----GCCDLGSVNLTMFVRNAFTDQAYFDFE 330 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 +R VR+LD V+D + + + R IGLG +G SAL +L I Y S + Sbjct: 331 GFKDLVRVGVRMLDLVLDATFWPLPEQRDEAMAKRRIGLGFLGLGSALVMLGIRYDSDKG 390 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 +A + E + A AS+ELA+E+GA+ + + + + Sbjct: 391 CSMAAQISEVMRDEAYLASIELAKEKGAFPALEVEQY--------------------LES 430 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI--ANICGVSQSIDPSYQNLYVKSNMSG 797 ++ + ++ +++ G+RNS+ ++IAPT TI A S I+P++ Y + Sbjct: 431 GFAKRLPEHIRAQIREHGIRNSHLLSIAPTGTITLAFADNASNGIEPAFSWTYNRKKRMA 490 Query: 798 ----DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + V + R +++ GS TA E+ Sbjct: 491 DGTHEIFEVADHAYRLYRHRGGNTDSL-------PGS--------------FVTALEMSA 529 Query: 854 MWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 M + Q +ID + S + + + + +Y AW GLK R S Sbjct: 530 MDHLRMLQAVQPYIDTSISKTVNVPADYPYEDFQNLYFAAWKAGLKGLATYRPNSVLGSV 589 Query: 913 KSTLKGVDGKLNAVPVTDPNSSTH 936 S + AV VT Sbjct: 590 LS-VDAPAAPEKAVEVTPIVGEDP 612 >gi|289167886|ref|YP_003446155.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus mitis B6] gi|288907453|emb|CBJ22290.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus mitis B6] Length = 719 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 158/712 (22%), Positives = 287/712 (40%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + ++ + + +F L L+ +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSIKDKINYLIDHNYIETAFIKKYRPEF-LEELSQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A++ N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIYQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + +G + I + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYAKGSYFDKYITGEFIPKSDRVKELFKDVFIPSAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|327458664|gb|EGF05012.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1057] gi|332363058|gb|EGJ40845.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK355] Length = 719 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 162/715 (22%), Positives = 280/715 (39%), Gaps = 84/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + E IEE + + + L + + Sbjct: 32 KEALEAFFKENVEPNTKQFSSI-TEKIEYLIEENYLEKEFIQLYSPEYIEELTAFIHAQ- 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y++Y L N + ++ RV E A + N + Sbjct: 90 DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIANEIIH 148 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + + Sbjct: 149 QRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNL 208 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 209 REAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKK 268 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD F + +N LFSP V + + + E Y+ Sbjct: 269 ENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITEKYDE 327 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 I + I A L ++ + E+G+P++ D N G + SNLC+E Sbjct: 328 LVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSNLCSE 384 Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I CNLGS N++ + +IRT R L V Sbjct: 385 ILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y S EAVE +++ Sbjct: 440 TDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 500 LVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA--ED 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|270292679|ref|ZP_06198890.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus sp. M143] gi|270278658|gb|EFA24504.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus sp. M143] Length = 719 Score = 293 bits (750), Expect = 9e-77, Method: Composition-based stats. Identities = 159/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + L L+ +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFIKKYRPEFLEELSQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E YE Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYEEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE++E +++ + Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + F+ S + G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHKFEKSDYANGSYFDKYVTGEFIPKSDRVKELFKDVFIPSAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+++V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|15901044|ref|NP_345648.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae TIGR4] gi|15903109|ref|NP_358659.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae R6] gi|111657124|ref|ZP_01407909.1| hypothetical protein SpneT_02001650 [Streptococcus pneumoniae TIGR4] gi|116516073|ref|YP_816516.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae D39] gi|148985788|ref|ZP_01818916.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|148990436|ref|ZP_01821594.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|148994531|ref|ZP_01823711.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|148999043|ref|ZP_01826475.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|149004131|ref|ZP_01828934.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS69] gi|149008158|ref|ZP_01831677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP18-BS74] gi|149013340|ref|ZP_01834071.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP19-BS75] gi|149026428|ref|ZP_01836565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|168483242|ref|ZP_02708194.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1873-00] gi|168486505|ref|ZP_02711013.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1087-00] gi|168489009|ref|ZP_02713208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP195] gi|168577271|ref|ZP_02723065.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae MLV-016] gi|221231889|ref|YP_002511041.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae ATCC 700669] gi|225856855|ref|YP_002738366.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae P1031] gi|225858967|ref|YP_002740477.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae 70585] gi|225860978|ref|YP_002742487.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae Taiwan19F-14] gi|237649544|ref|ZP_04523796.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae CCRI 1974] gi|237822454|ref|ZP_04598299.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae CCRI 1974M2] gi|298229750|ref|ZP_06963431.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255395|ref|ZP_06978981.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502820|ref|YP_003724760.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae TCH8431/19A] gi|307067833|ref|YP_003876799.1| ribonucleotide reductase subunit alpha [Streptococcus pneumoniae AP200] gi|307127226|ref|YP_003879257.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus pneumoniae 670-6B] gi|14972660|gb|AAK75288.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus pneumoniae TIGR4] gi|15458688|gb|AAK99869.1| Ribonucleoside-diphosphate reductase (major subunit) [Streptococcus pneumoniae R6] gi|116076649|gb|ABJ54369.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae D39] gi|147755113|gb|EDK62168.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|147757864|gb|EDK64874.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS69] gi|147760397|gb|EDK67376.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP18-BS74] gi|147762930|gb|EDK69877.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP19-BS75] gi|147922092|gb|EDK73215.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147924288|gb|EDK75382.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147927201|gb|EDK78237.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|147929259|gb|EDK80260.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|172043335|gb|EDT51381.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1873-00] gi|183570440|gb|EDT90968.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC1087-00] gi|183572571|gb|EDT93099.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae SP195] gi|183577174|gb|EDT97702.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae MLV-016] gi|220674349|emb|CAR68895.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae ATCC 700669] gi|225721006|gb|ACO16860.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae 70585] gi|225725183|gb|ACO21035.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae P1031] gi|225727917|gb|ACO23768.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238415|gb|ADI69546.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae TCH8431/19A] gi|301794278|emb|CBW36699.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae INV104] gi|301800115|emb|CBW32716.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae OXC141] gi|306409370|gb|ADM84797.1| Ribonucleotide reductase, alpha subunit [Streptococcus pneumoniae AP200] gi|306484288|gb|ADM91157.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae 670-6B] gi|327389422|gb|EGE87767.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA04375] gi|332073522|gb|EGI84001.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA17570] gi|332074794|gb|EGI85266.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA41301] gi|332075111|gb|EGI85582.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA17545] gi|332200631|gb|EGJ14703.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA41317] gi|332201650|gb|EGJ15720.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA47368] gi|332203033|gb|EGJ17101.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae GA47901] Length = 719 Score = 293 bits (750), Expect = 1e-76, Method: Composition-based stats. Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L LA +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|329913475|ref|ZP_08275946.1| Ribonucleotide reductase of class II (coenzyme B12-dependent) [Oxalobacteraceae bacterium IMCC9480] gi|327545350|gb|EGF30583.1| Ribonucleotide reductase of class II (coenzyme B12-dependent) [Oxalobacteraceae bacterium IMCC9480] Length = 794 Score = 293 bits (750), Expect = 1e-76, Method: Composition-based stats. Identities = 138/637 (21%), Positives = 249/637 (39%), Gaps = 81/637 (12%) Query: 320 FFMRVAMGLALKE---TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTV 376 RVA G+A E ++ +F + L +CF+ V Sbjct: 1 MRTRVAKGIAEPETNAKNRKAWTAKFLWAQQNGWVPAGRINSAAGLPLKATLMNCFVQPV 60 Query: 377 PDDLYGI-------FGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 D + G + A+ + A + GG+G +++ +R GA + GTN ++ G I +++ Sbjct: 61 GDSVTGFSDGKPGIYTAIAQAAETMRRGGGVGYNFSEIRPEGALVKGTNSRASGPISYMR 120 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 V + + V G R+GA L H DV F+ +++ + N + + D F Sbjct: 121 VFDSSCSTVESAGARRGAQMGVLNCDHPDVLNFITAKRDGS-----LSNFNLSVGVTDAF 175 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKM 549 M+ V + L + F+ + V+++++A +W M Sbjct: 176 MQAVASSGTIQLIHKA-APGNELMQAGAFQR----------DDGMWVYKEVAAQEIWGLM 224 Query: 550 LTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLA 609 + ++ P I + D N + + + ++N C E L + C+LGS+NL Sbjct: 225 MQSTYDFAEPGILYIDRMNQENNLYYCEKIEATNPCAEQPLP----DYGCCDLGSVNLTL 280 Query: 610 HFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 + FDY K + ++ +R LDNV+D + +E+ + R IGLG +G Sbjct: 281 CVTDPFSERASFDYAKFSQLVQIGIRFLDNVLDASQWPLEEQRLEAMNKRRIGLGFLGLG 340 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 SA+ +L I Y S A + E + A ASV+LA+E+GA+ F + + G F Sbjct: 341 SAMVMLGIRYDSDAGRTFAAKVSEEMRDAAYRASVDLAKEKGAFPLFDAAKYLAGAFV-- 398 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG--VSQSI 782 ++++ + T G+RNS+ ++IAPT TI + G S I Sbjct: 399 ------------------SRLPADIREGIATFGIRNSHLLSIAPTGTITLVFGDNASNGI 440 Query: 783 DPSYQNLYVKSN--MSGDFT--VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP 838 +P++ Y + M G V +Q + + ++P Sbjct: 441 EPAFSWNYTRKKRMMDGSIQEFEVADHAWRLYRQMGFD--------------VSDDSKLP 486 Query: 839 DDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897 + +A + ++ Q +ID + S + + + + +Y W GL Sbjct: 487 PE----FVSALTMSATDHMKMLESVQPFIDTSISKTVNVPADYDFDEFRNLYMDGWKAGL 542 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSS 934 K R S S +K ++ AV V N Sbjct: 543 KGLATYRPNSILGSVLS-VKSATPEVAAVAVGPDNDP 578 >gi|307708707|ref|ZP_07645170.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis NCTC 12261] gi|307615281|gb|EFN94491.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis NCTC 12261] Length = 719 Score = 293 bits (750), Expect = 1e-76, Method: Composition-based stats. Identities = 157/715 (21%), Positives = 283/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L L+ +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELSQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ ++ + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+++V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELREQVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|296392362|ref|ZP_06881837.1| NrdJa [Pseudomonas aeruginosa PAb1] Length = 714 Score = 293 bits (750), Expect = 1e-76, Method: Composition-based stats. Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + +E F L + + + N+G + +C ++ Sbjct: 48 WQRVAGALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 106 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 107 GTIQDSMDHILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 166 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV EF+ ++ + R N + I D FM+ V Sbjct: 167 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 222 Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P V D + + +E+ I + +R KV+ ++ A L Sbjct: 223 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 282 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 283 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 338 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 339 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 398 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 399 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 458 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 L + D +R + + SR EL + + G R ++ +IA Sbjct: 459 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 518 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ L+ E ++ E +L Sbjct: 519 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 566 Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + + D L TA + P ++ + QKW+D + S + + Sbjct: 567 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWVDSSISKTANVPTD 626 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + IYR AW GLK R Sbjct: 627 YPFEDFKDIYRYAWHQGLKGCTTFR 651 >gi|323352632|ref|ZP_08087602.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis VMC66] gi|322121668|gb|EFX93414.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis VMC66] Length = 719 Score = 293 bits (750), Expect = 1e-76, Method: Composition-based stats. Identities = 163/719 (22%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELAHKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIIMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFASIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|182684088|ref|YP_001835835.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus pneumoniae CGSP14] gi|303255567|ref|ZP_07341619.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS455] gi|303260587|ref|ZP_07346553.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP-BS293] gi|303262721|ref|ZP_07348660.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS292] gi|303265255|ref|ZP_07351166.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS397] gi|303267602|ref|ZP_07353444.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS457] gi|303269941|ref|ZP_07355679.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS458] gi|182629422|gb|ACB90370.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus pneumoniae CGSP14] gi|301801955|emb|CBW34683.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pneumoniae INV200] gi|302597473|gb|EFL64567.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS455] gi|302636153|gb|EFL66649.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP14-BS292] gi|302638300|gb|EFL68769.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae SP-BS293] gi|302640523|gb|EFL70932.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS458] gi|302642868|gb|EFL73173.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS457] gi|302645226|gb|EFL75462.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae BS397] Length = 719 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 158/715 (22%), Positives = 279/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L LA +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGA-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVVNPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|322389172|ref|ZP_08062733.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus parasanguinis ATCC 903] gi|321144077|gb|EFX39494.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus parasanguinis ATCC 903] Length = 719 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 157/709 (22%), Positives = 283/709 (39%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + ++ + + +F L LA +K + Sbjct: 32 KEALDAFFKENVVPNTKAFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E+ A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEEIAKDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640 ++E S NL + N +IR VR L V D + Sbjct: 386 LQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHI 445 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + N GLG MG S L I Y SPE+VE +++ + S Sbjct: 446 VAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESNN 505 Query: 701 LAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKK 751 +A+ERG + +F+ S + G + + E+ ++ + W EL+ Sbjct: 506 IARERGVTFHNFEKSDYANGTYFDKYTTGAFVPKSDRVKELFKDIFIPSA--EDWAELRA 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 564 KVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-------- 615 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + + +A+++D +I+ + + +DQ Sbjct: 616 -----------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 653 LSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|319947338|ref|ZP_08021571.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus australis ATCC 700641] gi|319746580|gb|EFV98840.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus australis ATCC 700641] Length = 719 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 159/709 (22%), Positives = 282/709 (39%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + ++ + + DF L LA +K + Sbjct: 32 KEALDAFFKENVVPNTMAFDSITDKINYLIEHNYIETAFIQKYRPDF-LEELAQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEDIAKDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKIRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640 ++E S NL + N +IR VR L V D + Sbjct: 386 LQVQEPSLINDAQEFIKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHI 445 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + N GLG MG S L I Y SPE+VE +++ + S Sbjct: 446 VAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVESNN 505 Query: 701 LAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKK 751 +A+ERG + +F+ S + G + + E+ ++ + W EL+ Sbjct: 506 IARERGITFHNFEKSDYANGSYFDKYTTGEFVPQSDRVKELFKDIFIPSA--EDWAELRA 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 564 KVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-------- 615 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + D + +A+++D +I+ + + +DQ Sbjct: 616 -----------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 653 LSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|330831086|ref|YP_004394038.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas veronii B565] gi|328806222|gb|AEB51421.1| Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Aeromonas veronii B565] Length = 715 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 143/653 (21%), Positives = 256/653 (39%), Gaps = 60/653 (9%) Query: 293 FEYLGLQILYDRYFLH-INGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFH 350 + L+I +Y L +G+ I+ + RVA LA +E E E F L + Sbjct: 19 MQETSLEIWDSKYRLKSKDGTPIDSSIDETYQRVARALAEQELEPEAWYEPFLWALRNGA 78 Query: 351 FMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + N+G + +C ++ T+ D + I G + E + K G+G D++ Sbjct: 79 I-PAGRITSNAGAFEHKPATSTINCTVSGTIEDSMDDILGKVHEAGLTLKAGCGIGYDFS 137 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA + G + G + F+ + + V+ G R+GA ++ H DV EF+ Sbjct: 138 TLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDIRHPDVIEFIQA 197 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS----------DLHDLYG 515 ++ + R N + I + F+K V ++A W+L P D + Sbjct: 198 KR----EDGRLRQFNLSLLITEDFVKAVKEDAPWSLIFPYTAKEVEQDGIALDDPAQVLW 253 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 ++ + + KV++ + A LW ++T ++ P D N + Sbjct: 254 ADWPNKEGVVFNELGQVACKVYKTMPARKLWNVIMTSTYDYAEPGFILIDKVNQMNNNWF 313 Query: 576 VGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVR 630 + ++N C E L C LGS+NL + FD+ + R Sbjct: 314 CEEIRATNPCGEQPLPPY----GACLLGSVNLTKFVRDPFTESAAFDWQAFRKVVAIFTR 369 Query: 631 VLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 +LDNV++IN + K ++ R G+G +G S L +L I Y S +V ++ + + Sbjct: 370 MLDNVVEINQLPLAKQREEITAKRRHGMGFLGLGSTLTMLQIKYGSAASVAFTEQVSQEL 429 Query: 691 SFHAISASVELAQERGAYSSFKGSLWDQG-------VFPIDSIGLLAEVRDELAMNRTSR 743 + S+ LA+E+G + G D I + +V+ ++ R SR Sbjct: 430 AMTGWQESLRLAKEKGPAPIMEQEFEVTGKMLRLRPEMAADGIKVGDKVKGKVLHARYSR 489 Query: 744 LPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNM 795 L + +G R ++ +IAPT TI+ S I+PS+ + Y ++ + Sbjct: 490 YMQQVAEVDPALVAELAEVGGRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVI 549 Query: 796 S---GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEID 852 V+ + L R+L + A + L TA +I Sbjct: 550 KPGKKSKESVDVYSFELLAYRELVNPAATPY----------ADDEASRLPDYFITADDIS 599 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 P ++ + Q WID + S + + ++ IY A GLK R Sbjct: 600 PAQHVDIQAAAQHWIDSSISKTANVPTDFPFEQFKDIYMYASDSGLKGCTTFR 652 >gi|299532605|ref|ZP_07045994.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni S44] gi|298719408|gb|EFI60376.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Comamonas testosteroni S44] Length = 797 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 149/674 (22%), Positives = 248/674 (36%), Gaps = 87/674 (12%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356 +L ++Y +G + E Q F RVA LA E + +F L Sbjct: 12 DVLAEKYLA--DGEQSE--QELFARVARALAAVEKPELQTHWEQQFLANLQRGAIGAGRI 67 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408 L +CF+ V D G + AL + A + GG+G D++ +R Sbjct: 68 MAAAGLDTKATLINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + GTN + G F+ V + + V G R+GA L H DV EF+ ++ Sbjct: 128 PRGALVRGTNSFASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 G R ++ N + + FM+ V +A W L S+ G Sbjct: 188 KG----RWNNFNVSVGVSSAFMQAVRDDAEWELIHVASPSEAQIQAG-----------AH 232 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + V++ A ALW ++ ++ P I F D N + + + ++N C E Sbjct: 233 RRDDGLWVYKSQPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQIAATNPCGEQ 292 Query: 589 TLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 L C+LG + L FD + + + VR+LDNV+D + Sbjct: 293 PLPPY----GCCDLGPVILTRFVREAFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPL 348 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + ++ R IG+G G AL LL + YAS ++ A + A +ASVELA+ Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAR 408 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+GA+ F + + ++ EL+ +K G+RNS+ Sbjct: 409 EKGAFPLFNAKQY--------------------LKSGFAKRLPKELRATIKKHGLRNSHL 448 Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKS----NMSGDFTVVNSFLVNELKQRDLWD 817 ++IAPT T++ S I+P++ Y + N F V K Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRKKRTANGGEQFYTVQDHAYRLYKAL---- 504 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + +P L + +A E+ + Q +ID + S + + Sbjct: 505 ---------------HGDDVP--LPECFVSALELSASEHVAMMRCVQPFIDTSISKTVNI 547 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAV-PVTDPNSST 935 + + +Y + W +GLK R ST +S Sbjct: 548 PADYPFEDFKHLYMECWEVGLKGCATYRPNDTLGAVLSTDSAPAPSQAPTGKSQAAINSL 607 Query: 936 HSLGIPSSCTSDTE 949 S G+ + E Sbjct: 608 SSSGMTAVIERRPE 621 >gi|168491100|ref|ZP_02715243.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC0288-04] gi|183574524|gb|EDT95052.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pneumoniae CDC0288-04] Length = 719 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 158/715 (22%), Positives = 280/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L LA +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKDLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|289642421|ref|ZP_06474567.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Frankia symbiont of Datisca glomerata] gi|289507766|gb|EFD28719.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Frankia symbiont of Datisca glomerata] Length = 976 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 119/650 (18%), Positives = 230/650 (35%), Gaps = 66/650 (10%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + E E +L F ++P FN GT Q+S+CF+ V D + I Sbjct: 119 GYFASPADAEIFEHELTWMLLHQVFSFNSPVWFNVGTPAPQQVSACFILAVDDTMESILN 178 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 179 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 237 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWI 485 + A L+ H D+ +F++ + + R + + N + + Sbjct: 238 RAAKMVVLDVDHPDIVDFVETKSREENKIRALRDAGFDMDLGGRDIVSVQYQNANNSVRV 297 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 D FM+ V +A + L + R + + + A L Sbjct: 298 TDEFMRAVIDDADFDLRA---------------------------RLDGRTIETVRARTL 330 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 +R + ++ P I + D N G + +SN C+E + + CNL S+ Sbjct: 331 FRSIAQAAWDCADPGIQYDDTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASL 386 Query: 606 NLLAH-FANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 NL+ + FD D + + + +D I + + R +G+G Sbjct: 387 NLMKFLRKDLSFDADAFVAAVELIITAMDISICFADFPTPEITRVTRMFRQLGIGYANLG 446 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + L Y S + ++ A S E+A GAY F + Sbjct: 447 ALLMATGHAYDSEGGRAMGAAITSLMTATAYRRSAEIAAALGAYDGFARNTDAHRRVIRK 506 Query: 725 SIGLLAEVR----DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-S 779 VR D+ + + W+ + + G RN+ + PT TI + Sbjct: 507 HAAATDAVRTVGVDDARVLAVAAREWERAQSVGEKHGWRNAQVSLLPPTGTIGLAMDCDT 566 Query: 780 QSIDPSYQNLYVKSNMSG-DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIER 836 I+P + +K + G +VN + L+ +E + + ++Y G + + Sbjct: 567 TGIEPDLALVKMKKMVGGSSMRIVNQTVPAALRALGYAEETIEAIVEYIAEHGHVIDAPG 626 Query: 837 IPDDLKKIHATA---FEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQA 892 + + ++ A I PM I + Q ++ A S + + + ++++ IY + Sbjct: 627 LRREHYEVFDCAIGERAITPMGHIRMMAAVQPFLSGAISKTVNMPTSATVEEVEQIYLEG 686 Query: 893 WLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 W +GLK R S L+G + + + Sbjct: 687 WRLGLKALAIYRDNCKVGQPLSDLRGAKRSASGGAGEQTAAQPATAPSGE 736 >gi|306829460|ref|ZP_07462650.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC 6249] gi|304428546|gb|EFM31636.1| ribonucleoside-diphosphate reductase [Streptococcus mitis ATCC 6249] Length = 719 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 157/712 (22%), Positives = 286/712 (40%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + ++ + + +F L L+ +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSITDKIDYLIEHNYIETAFIKKYRPEF-LEELSQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A++ N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAVAIDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y S E+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFRDVFIPTAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+++V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LREKVQANGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|325690075|gb|EGD32079.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK115] Length = 719 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 164/719 (22%), Positives = 280/719 (38%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + E IEE + E + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSI-TEKIKYLIEENYLEKEFIELYSPEYIEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ERG + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERGVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELCDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|322412097|gb|EFY03005.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 719 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 166/728 (22%), Positives = 289/728 (39%), Gaps = 89/728 (12%) Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDL 278 V + LL K +E L + + + + + +++ + + +F + Sbjct: 22 VGGKILLHK-DKEALEAFFTENVLPNTMSFTSVTEKIEYLISNDYIESAFIQKYRPEF-I 79 Query: 279 VYLANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKE 336 LA+ +K E ++ Y +Y L N +E + M A+ A E Sbjct: 80 TELADVIKTENFQFKSFMAAYKFYQQYALKTNDGDYYLESLEDRVMFNALYFA---DGNE 136 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAK 395 A + + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ Sbjct: 137 TLAKDLAIEMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSR 196 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+G + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL + Sbjct: 197 IGGGVGITLSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVF 256 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H D+ FL +K D++ R ++ +PD F + +N LFSP ++ YG Sbjct: 257 HPDIIAFLSTKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYG 313 Query: 516 KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 F K+ + I A L ++ + E+G+P+I D N +P Sbjct: 314 IPFNYLDITNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI- 372 Query: 575 HVGVVHSSNLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLA 622 G + SNLC+EI + CNLGS N+L + Sbjct: 373 -DGKIIMSNLCSEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSP-----DFG 426 Query: 623 STIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVE 681 +I+T R L V D + + K N GLG MG S L HI Y SPE++E Sbjct: 427 RSIKTMTRALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIE 486 Query: 682 IADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEV 732 D +++ + S +A+ER + F S + G + I L+ ++ Sbjct: 487 FTDIYFMLMNYWTLVESNNIARERQTTFVGFDKSKYADGTYFDKYITGQFVPKSDLVKDL 546 Query: 733 RDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + S W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + Sbjct: 547 FKNHFIPQAS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEER 604 Query: 793 -SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G + D + +A+++ Sbjct: 605 QEKKIGKIYYP-------------------------------ANGLSTDTIPYYTSAYDM 633 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGL 897 D +I+ + + +DQ SL L+L + + L + A+ G+ Sbjct: 634 DMRKVIDVYAAATEHVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGI 693 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 694 KSIYYIRT 701 >gi|253995423|ref|YP_003047487.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera mobilis JLW8] gi|253982102|gb|ACT46960.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylotenera mobilis JLW8] Length = 721 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 133/659 (20%), Positives = 264/659 (40%), Gaps = 59/659 (8%) Query: 321 FMRVAMGL---ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFL 373 ++RVA L E ++ + +F L + N+G + +C + Sbjct: 51 YLRVARALADVETTEEKRAEWHEKFLWALRRGAI-PAGRITSNAGALEHKPATSTINCTV 109 Query: 374 TTV-PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 + V D + I G + E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 110 SGVISDSMDDILGKVHEAGLTLKAGCGIGYEFSTLRPKGAFVAGAGAYTSGPLSFMDIYD 169 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 V+ G R+GA A + H DV +F+ ++ + R N + I FM+ Sbjct: 170 KMCFTVSSAGGRRGAQMATFDISHPDVTDFIKAKR----ENGRLRQFNLSCLITKEFMEA 225 Query: 493 VTQNAGWTLFSPDE----------VSDLHDLYGKEF--EIAYENYERQADRGEI--KVFR 538 V +A W L P V+D + +E+ + Y D G++ +V++ Sbjct: 226 VKADAEWKLAFPVTEKESIIDNLNVNDESQVVWREWPIKGKYLTKTDGVDAGKVACRVYK 285 Query: 539 KISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETA 598 I A LW +++ ++ P D N + + ++N C E L Sbjct: 286 TIKARRLWDVIMSSTYDFAEPGFILIDRVNEMNNNWFCENIRATNPCGEQPLPPY----G 341 Query: 599 VCNLGSINLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTH 653 C LGS+NL FD+ + + R+LDNV++IN +++ + Sbjct: 342 ACLLGSVNLTRFVKKPFTDEAYFDWKEYREVVAIFTRMLDNVVEINGLPLQQQRDEIMRK 401 Query: 654 RAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG 713 R G+G +G S+L ++ + Y ++++ +E ++ S V+LA+E+GA Sbjct: 402 RRHGMGYLGLGSSLTMMKMKYGEEDSIKFTEEVTRVMAEEGWSVGVQLAEEKGAAPIMDE 461 Query: 714 -------SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP---WDELKKRVKTIGMRNSNC 763 L + D I + ++ ++ + + SR + L+ ++ T G+R ++ Sbjct: 462 KFEITADMLAKRPEMAADGIKVGQKIAGKVLLGKYSRYMQQFPEGLRNQIATKGVRFTHH 521 Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 +IAPT TI+ S I+PS+ + Y ++ + ++ D++ ++ Sbjct: 522 SSIAPTGTISLSLANNASNGIEPSFAHHYARNVI--------REGKKSKEKVDVFSYELL 573 Query: 822 SDLKYHDGSIGNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + + + P++ L + I ++ + QKWID + S + + + Sbjct: 574 AYRELINPNAMPFSDKPEEQLPDYFLDSSTIMAKAHVDIQAASQKWIDSSISKTINVPTD 633 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLRSRS-ATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 + IY A+ GLK R A T K ++ + D Sbjct: 634 YDFEDFKNIYLYAYDKGLKGCTTFRFNPEAFQGVLVTEKDLESTTYKFTLEDGTEIEAK 692 >gi|312867246|ref|ZP_07727456.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parasanguinis F0405] gi|311097375|gb|EFQ55609.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parasanguinis F0405] Length = 719 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 157/712 (22%), Positives = 283/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + ++ + + +F L LA +K + Sbjct: 32 KEALDAFFKENVVPNTKAFDSITDKIQYLLEHNYIERAFIEKYRPEF-LEELAQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIARDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFVQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE++E +++ + Sbjct: 443 SHIVAVPTIDHGNKLAHTFGLGAMGLHSYLAQQLIEYGSPESIEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + E+ ++ + W E Sbjct: 503 SNNIARERGVTFHNFEKSDYANGTYFDKYTTGEFVPKSDRVKELFKDIFIPSA--EDWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LRAKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKTENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|327489433|gb|EGF21226.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus sanguinis SK1058] Length = 719 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 158/719 (21%), Positives = 281/719 (39%), Gaps = 86/719 (11%) Query: 228 LRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL 285 L + E L +K+ + + + + E ++ + ++ + L + Sbjct: 28 LHKDQEALKAFFKENVEPNTKQFSSITEKIKYLLEENYLEKEFIELYSPEY-IEELTAFI 86 Query: 286 KYERDFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 + DF F ++ Y++Y L N + ++ RV E A + N Sbjct: 87 HAQ-DFKFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVLFNALYFANGDEAIAKDIAN 144 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EIIHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ IPD F + +N LFSP V + + + E Sbjct: 265 STKKENADEKVRVKTLSLGVVIPDKFYELARKNEEMYLFSPYSVEREYGV-PFAYLDITE 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 KYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVVNIDTANR--SNPIDGKIVMSN 380 Query: 584 LCTEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI CNLGS N++ + +IRT R Sbjct: 381 LCSEILQVQEPSLLNDAQEYLHLGTDVSCNLGSTNVVNMMTSP-----DFGKSIRTMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D + + N GLG MG S L I Y S EAVE + Sbjct: 436 LTFVTDSSHITAVPSIDNGNSLAHTFGLGAMGLHSYLAQQLIDYGSAEAVEFTSIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S +A+ER + +F+ S + G + + + E+ + + Sbjct: 496 NYWTLVESNNIARERRVTFHNFEKSDYANGTYFDKYLTGEFVPKSDRVKELFAGIFIPSA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 W EL+ ++K G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 556 --EDWAELRDKIKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + + + +A+++D +I+ Sbjct: 614 YP-------------------------------AAGLSTETIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATEHVDQGLSLTLFMRSDIPKGLYEWKKESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|307709352|ref|ZP_07645810.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK564] gi|307619935|gb|EFN99053.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus mitis SK564] Length = 719 Score = 292 bits (748), Expect = 2e-76, Method: Composition-based stats. Identities = 157/715 (21%), Positives = 283/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE+ + L L+ +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEQNYIETAFIKKYRPEFLEELSQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + ++ RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ ++ + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 558 WAELRDKVQVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|215428499|ref|ZP_03426418.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T92] Length = 701 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 162/672 (24%), Positives = 273/672 (40%), Gaps = 72/672 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDFIYRQAWLMG 896 ++ AW G Sbjct: 655 VNKAQIYAWAQG 666 >gi|309800431|ref|ZP_07694592.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus infantis SK1302] gi|308115947|gb|EFO53462.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus infantis SK1302] Length = 719 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 159/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + L L +K + Sbjct: 32 KEALEAFFKENVVPNTMVFNSITDK-INFLIEHNYIETAFIKKYRPEFLEELHQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A++ N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIAIDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSKAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGVTFHNFEKSDYANGSYFDKYLTDEFLPKSDRVKELFKDIFIPTAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LRDKVKADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPTGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|163791217|ref|ZP_02185633.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium sp. AT7] gi|159873487|gb|EDP67575.1| ribonucleotide-diphosphate reductase alpha subunit [Carnobacterium sp. AT7] Length = 727 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 166/696 (23%), Positives = 285/696 (40%), Gaps = 89/696 (12%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311 E IEE + L +D+ Y R F F ++ Y +Y L N Sbjct: 60 DEKLNYLIEEDYIEEEFLLKYDREFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTND 118 Query: 312 --SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQL 368 +E + R+ K A + + + + +TPT N+ R +L Sbjct: 119 GERFLERYED---RIVFNALYLADGDTKLASRLADEIVNQRYQPATPTFLNAGRKRRGEL 175 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL DD+ I + L++ GG+G + + +R G I + S GV+P + Sbjct: 176 VSCFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVM 235 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G+R GA YL +H D+ FL +K D++ R ++ +PD Sbjct: 236 KLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDK 295 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 F + + LFSP +V ++ + + Y+ + EI+ + ISA L + Sbjct: 296 FYELAAHDEQMYLFSPYDVERIYGE-PFAYIDITKEYDNMVNNEEIRKSK-ISARELENE 353 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + E+G+P+I D N +P G + SNLC+EI Sbjct: 354 ISKLQQESGYPYIINVDTANRENPVY--GTITMSNLCSEILQIQEPSLINNDQTYEHLGT 411 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS N++ + +I T VR L V D + + K N + Sbjct: 412 DISCNLGSTNIVNLMKSPN-----FGQSIDTMVRALTMVTDQSSIDAVPSIKNGNDRYHT 466 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG MG + L L I Y SPE+VE D + ++++ + +S ++A+ER + +F+ S Sbjct: 467 IGLGAMGLHTFLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERGTTFYNFEKS 526 Query: 715 LWDQGVFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + I + + D + + W LK+ V + G+ + N +A+ Sbjct: 527 KYANGTYFDKYINENFVFSSEKVQHLFDGIQVPTI--EDWAALKEAVMSDGLYHQNRLAV 584 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APT +I+ + S S+ P + + + +G FL N+ Sbjct: 585 APTGSISYVNETSSSLHPITRLIEERQEKKTGKTYYPAPFLSND---------------- 628 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-------- 877 + +A+++D +I+ + QK IDQ SL L+L Sbjct: 629 ---------------TMPYYKSAYDMDMRQVIDVYAAAQKHIDQGMSLTLFLRSEIPEGL 673 Query: 878 --------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + + L+ + AW G+K+ YY+R+ Sbjct: 674 YEWKNGRTTKQTTRDLNILRHYAWKKGVKSIYYVRT 709 >gi|269102468|ref|ZP_06155165.1| ribonucleotide reductase of class II (coenzyme B12-dependent) [Photobacterium damselae subsp. damselae CIP 102761] gi|268162366|gb|EEZ40862.1| ribonucleotide reductase of class II (coenzyme B12-dependent) [Photobacterium damselae subsp. damselae CIP 102761] Length = 716 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 140/655 (21%), Positives = 255/655 (38%), Gaps = 62/655 (9%) Query: 293 FEYLGLQILYDRYF--LHINGSRIEMPQAFFMRVAMGLALKETEKE--KRAVEFYNLLSS 348 F+ ++I +Y + F RVA L+ E K EF L + Sbjct: 18 FQPTSIEIWNSKYRLKSKYGDAIDLTLDDTFKRVAKALSALEKPKLQQHWYQEFLWALRN 77 Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLTTV-PDDLYGIFGALQENAMLAKYSGGLGND 403 + N+G + +C ++ + D + I + E + K G+G D Sbjct: 78 GAI-PAGRITSNAGAFEHKPATSTINCTVSGIIEDSMDDILAKVHEAGLTLKAGCGIGYD 136 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA + G + G + F+ + + V+ G R+GA ++ H D+ EF+ Sbjct: 137 FSTLRPRGAFVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTMDVRHPDIIEFI 196 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDL 513 ++ + R N + I + F++ V Q+ W L P +V + + Sbjct: 197 RAKR----EDGRLRQFNLSLLITEEFIEAVKQDLSWQLIFPMTAKEIAQDGIDVDNDETM 252 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 ++ + E + K++R + A LW ++T ++ P D N + Sbjct: 253 VWADWPTTTDLIENDLGQVACKIYRTLPARNLWNIIMTSTYDYAEPGFILIDKVNQMNNN 312 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTA 628 + ++N C E L C LGS+NL FD+ + + Sbjct: 313 WFCEDIRATNPCGEQPLPPY----GACLLGSVNLTKFVRYPFTEQAEFDWKEFRKVVAIF 368 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R+LDNV++IN +EK + R G+G +G S L +L Y S +V ++ Sbjct: 369 TRMLDNVVEINHLPLEKQRHEIENKRRHGMGFLGLGSTLTMLRHQYGSAASVAFTEQVAL 428 Query: 689 FISFHAISASVELAQERGAYSSFK-------GSLWDQGVFPIDSIGLLAEVRDELAMNRT 741 ++ ++ELA+E+G+ + L + D L +V+ + + Sbjct: 429 ELAVVGWQQALELAKEKGSAPIMEQEFEVTAKMLRQRPEMHDDGYELGDKVKGRILHAKY 488 Query: 742 SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793 SR EL ++ G R ++ +IAPT TI+ S I+PS+ + Y ++ Sbjct: 489 SRYMQQLAEVEPELVTQLMETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYTRN 548 Query: 794 NM-SGDFTV--VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFE 850 + +G T V+ + L R+L ++ + D L TA + Sbjct: 549 VIVAGKKTKESVDVYSYELLAYRELINDKAMPYSTEPD----------AMLPDYFITADD 598 Query: 851 IDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 I P +E + Q+WID + S + + + IY A+ GLK R Sbjct: 599 ITPSQHVEVQAAAQRWIDSSISKTANVPTNFAFESFKDIYMDAYDKGLKGCTTFR 653 >gi|237626477|gb|ACR02999.1| UL39 [synthetic construct] Length = 822 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 162/698 (23%), Positives = 284/698 (40%), Gaps = 67/698 (9%) Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 E V + + ++ D++ + L+ Y+ Y + + + E FF Sbjct: 144 EVVDNIRRYRAHIEMDMLRFYGSIHPWLKRLGLQSALK--YEEYLVELEDGKKESLCQFF 201 Query: 322 MRVAMGLALKETEKEKRAVE--------------FYNLLSSFHFMCSTPTLFNSGTRHPQ 367 +R+A A + + K+ F+ L++ F+ STP + G Sbjct: 202 VRLAAAAATEASMKKPFMTTLTTGVANWRTTFTTFFLALANQLFVPSTPCMLFLGREGTS 261 Query: 368 LSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVI 425 +SC+L + + ++ GG+G + G G++ Sbjct: 262 TASCYLMDPRTNNTQDTLKAITEDVVPHLLARGGIGISLQHLNGKF-----------GLM 310 Query: 426 PFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR-KNTGDDRRRTHDMNTANW 484 +KV + +A N R +C YLE WH D+ L++R ++ RR ++ A W Sbjct: 311 HVMKVLDSLVMAANVNESRPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALW 370 Query: 485 IPDLFMKRVTQNAG-----WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK 539 DL KR ++ S L L+ +EFE YE E E Sbjct: 371 SCDLLFKRYLRHVNGEKNVIWTLFDSRASILTKLHSEEFEKEYERLE-----SEGLGVAS 425 Query: 540 ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETA 598 I + ++ TG P+I FKD CN G + SNLCTEI + + Sbjct: 426 IPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNG 485 Query: 599 VCNLGSINLLAHFAN----NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHR 654 VC+L SINL N QFD+D L +R A ++ +++ + EK+ +R Sbjct: 486 VCSLASINLARCVRNIDGNRQFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNR 545 Query: 655 AIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKG 713 ++G+G+ GF +A + + A + EF+ A++ S E + ++ F Sbjct: 546 SMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSN 605 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIA 773 S + +G D + + W+ L+ R+ + G+ N+ +A+ PTA A Sbjct: 606 SYYARGRLHFDGW---------ANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASA 656 Query: 774 NICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE----AMISDLKYHDG 829 + VS+ P + N++ K +G+ N L+ EL+ L +E A I+ L+ + Sbjct: 657 QVTEVSEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANW 716 Query: 830 SIGNIERIPDDLKKI--HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPS-----G 882 +I + + + TAF+ D LI+ S R + DQ+QS+ L++ E + Sbjct: 717 NIQTALGNKPECHSLLKYKTAFDYDQALLIDLCSDRAPFADQSQSMTLFITETADGTLLA 776 Query: 883 KKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGV 919 ++ + A+ GLKT YY + R AT+ G Sbjct: 777 SRVMNLLLHAYKAGLKTGMYYCKIRKATNAGVFCGDGE 814 >gi|254785736|ref|YP_003073165.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Teredinibacter turnerae T7901] gi|237684341|gb|ACR11605.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Teredinibacter turnerae T7901] Length = 719 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 126/618 (20%), Positives = 250/618 (40%), Gaps = 57/618 (9%) Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT-TVP 377 RVA L+ E K + + + + + N+G + + +C ++ T+ Sbjct: 60 RVAKALSSVEKSKRAHWEKEFIWALDNGAIPAGRIISNAGAQEYKPATSTINCTVSGTIN 119 Query: 378 DDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVA 437 D ++GI E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 120 DSMHGILEKNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIFDKMCFT 179 Query: 438 VNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 V+ G R+GA A + H DV++F+ ++ + + N + I D F++ V ++ Sbjct: 180 VSSAGGRRGAQMATFDVHHPDVQDFIRAKR----EDGKLRQFNLSLLITDDFIRAVKEDT 235 Query: 498 GW----------TLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 W P +++D + + + + ++++ I A LW Sbjct: 236 DWALSFPLSQRDMEHKPVDLNDSTQVVWRRVPAKDKYITNEEGLTACRIYKSIPAKRLWN 295 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 ++++ ++ P D N ++ + ++N C E L C LGS+NL Sbjct: 296 QIMSSTYDFAEPGFILIDRVNDQNNNWFCENIRATNPCGEQPLPPY----GSCLLGSVNL 351 Query: 608 LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 F+++K + R+LDNV++IN +E+ + R G+G +G Sbjct: 352 TVFVEEPFTENARFNWEKYRKVVAIFTRMLDNVVEINGLALEQQRDEITRKRRHGMGFLG 411 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGSL 715 S L LL IPY S ++ ++ ++ + LA+E+G Y + L Sbjct: 412 LGSTLALLRIPYGSSASIAFTEQVSRELAITGWREGLSLAKEKGMAPALADEYDVTEAML 471 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMAIAPT 769 + D + +V+ + +R S +L + G R ++ +IAPT Sbjct: 472 RMRPAMAADGLKAGDKVKGSVLFSRYSNYMSKLAEEDPQLLADLAEHGCRFTHHSSIAPT 531 Query: 770 ATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 TI+ S I+PS+ + Y ++ + E K+ + +L + Sbjct: 532 GTISLSLANNASNGIEPSFAHHYSRNI------------IREGKKSKEKVDVFSYELLAY 579 Query: 828 DGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLD 886 + + E P DL + +A + P ++ + QKW+D + S + + S + Sbjct: 580 R-HLIDAEAGPSDLPEYFVSADSVAPSQHVDVQAAAQKWVDSSISKTINVPTNISYEAFK 638 Query: 887 FIYRQAWLMGLKTTYYLR 904 IY A+ GLK R Sbjct: 639 DIYLYAYDQGLKGCTTFR 656 >gi|302557997|ref|ZP_07310339.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces griseoflavus Tu4000] gi|302475615|gb|EFL38708.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces griseoflavus Tu4000] Length = 964 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 116/645 (17%), Positives = 227/645 (35%), Gaps = 70/645 (10%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRR-------------------RTHDMNTANWIPDLFMKRVT 494 H D+E+F++ + + R + + N + + D FM+ V Sbjct: 243 VDHPDIEDFIETKVKEEEKIRVLRDAGFDMDLGGDDIASVQYQNANNSVRVNDEFMQAVE 302 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 Q + L + +V ++ A AL+R++ + Sbjct: 303 QGGKFGLRARMT---------------------------GEVIEEVDAKALFRRLAEAAW 335 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-- 612 P I + N G + +SN C+E + CNL S+NL+ Sbjct: 336 ACADPGIQYDGVINNWHTCPESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDD 391 Query: 613 ---NNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 N F+ ++ + + +D I +K ++ R +G+G + L Sbjct: 392 GLGNQSFETERFQKVVELVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMA 451 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG-- 727 Y S +A ++ A S ELA G Y + + Sbjct: 452 TGHAYDSDGGRALAGAITSLMTGTAYRRSAELAAIVGPYDGYARNADAHQRVMRQHADAN 511 Query: 728 --LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDP 784 + + + + W ++ + + G RN+ +APT TI + ++P Sbjct: 512 GTAVRMDDLDTPVWAAATEAWQDVVRVGEKNGFRNAQASVLAPTGTIGLAMSCDTTGVEP 571 Query: 785 SYQNL-YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDL 841 + + K G +VN + L++ +E + + + +G++ + + + Sbjct: 572 DLALVKFKKLVGGGSMQIVNGTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAPGLKQEH 631 Query: 842 KKIHATAF---EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGL 897 ++ A I PM + + Q WI A S + + + ++++ IY +AW +G+ Sbjct: 632 YEVFDCAMGERAISPMGHVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYFEAWKLGV 691 Query: 898 KTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPS 942 K R S K + + Sbjct: 692 KALAIYRDNCKVGQPLSAKTKEKEKAEVTEKAEETIRAAVEKVVE 736 >gi|121611904|ref|YP_999711.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Verminephrobacter eiseniae EF01-2] gi|121556544|gb|ABM60693.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Verminephrobacter eiseniae EF01-2] Length = 813 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 140/650 (21%), Positives = 244/650 (37%), Gaps = 87/650 (13%) Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVE-FYNLLSS 348 D + + +L ++Y Q + RVA LA E + + E + Sbjct: 10 DLGLQPISQDVLCEKYLKPGET----TAQMLYQRVARALASVEAPELRSRYEALFLANLQ 65 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYG--------IFGALQENAMLAKYSGG 399 + + + +GT L +CF+ V D + G I+ AL+E A + GG Sbjct: 66 AGAIGAGRIMSAAGTDIQATLINCFVQPVGDCIQGQDEDGFPGIYEALREAAETMRRGGG 125 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G D++ +R GA + T + G ++ V + + V G R+GA L H DV Sbjct: 126 VGYDFSRIRPKGARVMATASMASGPCSYMNVFDQSCATVESAGARRGAQMGVLRIDHPDV 185 Query: 460 EEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EF+ ++ G R ++ N + +PD F++ + +A W L G Sbjct: 186 HEFISAKRQPG----RWNNFNVSVSVPDAFIQALQDDAAWDLVHKARPGAALLAQG---- 237 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 V+ + A ALW +++ ++ P I F N + + + Sbjct: 238 -------AHQRADGQWVYASVPARALWERIMRSAYDYAEPGILFLGRINEDNNLHYCETI 290 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-------FDYDKLASTIRTAVRVL 632 ++N C E L + C+LG + L + FD++ A + VR L Sbjct: 291 TATNPCGEQPLPAY----GCCDLGPVILPRFVRHPFGFGGAAAFDFEAFAQAVALQVRAL 346 Query: 633 DNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 DNV+D+ + + ++ R IG+G G + L +L + Y PE +A + Sbjct: 347 DNVLDLTYWPLPQQREEAMAKRRIGVGFTGLGNTLAMLCLRYDRPEGRAMAVRIARCMRD 406 Query: 693 HAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKR 752 A ASV+LA+E+GA+ F + LA R + + LK Sbjct: 407 AAYRASVDLAREKGAFPHFSAGPY-------------------LAEGRFASRLPEALKAA 447 Query: 753 VKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDF----TVVNSFL 806 ++ G+RNS+ ++IAPT T++ S I+PS+ Y + + D V Sbjct: 448 IRQHGIRNSHLLSIAPTGTVSLAFADNASNGIEPSFAWTYKRKKRAADGGSTEYAVQDHA 507 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 ++ G + +A ++ I Q W Sbjct: 508 WRLYRELG--------------GDAQALP-------DYFVSALDMPVQAHIAMMEAVQPW 546 Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 +D A S + + + + +Y QAW LK R + T Sbjct: 547 VDTAISKTVNIPVDYPYEDFKDLYLQAWRARLKGLATYRPNAILGAVLET 596 >gi|254482169|ref|ZP_05095410.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [marine gamma proteobacterium HTCC2148] gi|214037494|gb|EEB78160.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [marine gamma proteobacterium HTCC2148] Length = 707 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 132/674 (19%), Positives = 265/674 (39%), Gaps = 59/674 (8%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E E +++ F L + + N+G + + +C ++ Sbjct: 50 YARVARALAEVEDETVRQEWEQRFVWALKRGAI-PAGRIVSNAGAQEHKPSTSTINCTVS 108 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 ++ D + GI E + K G+G +++ +R GA + G + G + F+ + + Sbjct: 109 GSITDSMEGILQKNLEAGLTLKAGCGIGYEFSTLRPRGAFVSGAGAYTSGPMSFMDIFDK 168 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA A + H DV +F+ ++ + R N + I + F+ V Sbjct: 169 MCFTVSSAGGRRGAQMATFDVHHPDVFDFVKAKR----EDGRLRQFNLSLLITEDFINAV 224 Query: 494 TQNAGWTLFSPDEVSDLHDL--------YGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 ++ W L P + +L + F + + + +V+++I A+ L Sbjct: 225 KEDGEWPLSFPVTPKEFANLELDPEQEVVWRSFPVTDGYVTNEQGQVACRVYQRIRAIKL 284 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W +++ ++ P D N ++ V ++N C E L C LGS+ Sbjct: 285 WNAIMSSTYDYAEPGFILIDEVNKKNNNWFCENVRATNPCGEQPLPPY----GSCLLGSV 340 Query: 606 NLLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+++ + R+LDNV++IN +E+ ++ + R G+G Sbjct: 341 NLTRFVREPFTDKAHFDWEEYREVVAVFTRMLDNVVEINGLPLEQQRQEITSKRRHGMGF 400 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 +G S L +L + Y +++E +E + ++ ++LA+E+GA G Sbjct: 401 LGLGSTLTMLQMKYGEEDSLEFTEEVSKQMAVSGWKIGLDLAREKGAAPIMDEEFEVTGE 460 Query: 721 F-------PIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 D I L ++ ++ ++ S EL + G R ++ +IA Sbjct: 461 MLRRRPEMAADGIKLGDKLPGKVLHSKYSHYMQALALEEPELVNSIIQEGARFTHHSSIA 520 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ + ++ D++ +++ + Sbjct: 521 PTGTISLSLANNASNGIEPSFAHHYSRNVI--------REGKKSKEKVDVFSFELLAYRE 572 Query: 826 YHDGSIGNI-ERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 +G + + L + + P ++ S QKW+D + S + + + + Sbjct: 573 LVNGDAMPLTDDESKKLPDYFIASDNVTPRQHVDVQSAAQKWVDSSISKTINVPTDCPYE 632 Query: 884 KLDFIYRQAWLMGLKTTYYLR-----SRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSL 938 Y A GLK R S+ E+ + + +T L Sbjct: 633 DFKDTYLYAAEQGLKGCTTFRFIPEASQGVLMKEEDWRTLTISSPLRMAPRLNSRATKKL 692 Query: 939 GIPSSCTSDTECEV 952 + CT C + Sbjct: 693 SMTGRCTPQPTCSM 706 >gi|208401181|gb|ACI26682.1| UL39 [Anatid herpesvirus 1] Length = 810 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 157/595 (26%), Positives = 255/595 (42%), Gaps = 48/595 (8%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGG 399 F+ LSS + +TP + G +SC+L + + L E A + + GG Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDTVRSILNEVAPILQSRGG 280 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G + N +S+G++ LK+ + +A+N R VC Y+E WH D Sbjct: 281 VGIALHTLN--------QNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHADT 332 Query: 460 EEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVT-----QNAGWTLFSPDEVSDLHDL 513 L ++ ++ R + +A W+PDL KR + F D S+L L Sbjct: 333 RAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFDDRASNLSKL 392 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG FE YE YE + I + ++ TG P+I KD N Sbjct: 393 YGDRFEREYEYYESSGFGVD-----SIPIREMMYSIVRSAATTGSPFIVLKDAFNRHYHL 447 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRT 627 + SNLCTEI + + VCNL SINL ++ FD L +RT Sbjct: 448 DTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRAVRT 507 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A ++ ++ N + EK++ HR+IG+GL G + L + EA ++ Sbjct: 508 ATIFVNAMMLCNDYPTEKSRAGMERHRSIGVGLQGLHTTFLRLGLDMVCDEARKLNKRIA 567 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E + A++ S EL + +S F S++ G F D + T + W Sbjct: 568 ELMLLEAMTTSCELCEHGLPKFSDFDESIYSSGRFHFDGWE---------DVELTEQYEW 618 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 DEL++RVKT G+ NS +A+ PT + + + VS+ P + NL+ K + +G+ N L Sbjct: 619 DELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRPNPLL 678 Query: 807 VNELKQRDLWDEAMISDLKY---HDGSIGNIERIPDDLKKI--HATAFEIDPMWLIESAS 861 + EL+ ++ + L+ S + + + T FE + + L+ Sbjct: 679 MEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMKYKTVFEYNQIDLLNMCR 738 Query: 862 RRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++D +QS +LY+ E S + + A+ GLKT YY R R AT+ Sbjct: 739 DRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKATN 793 >gi|26553538|ref|NP_757472.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma penetrans HF-2] gi|26453544|dbj|BAC43876.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma penetrans HF-2] Length = 725 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 166/708 (23%), Positives = 297/708 (41%), Gaps = 77/708 (10%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY------LANDLKYE 288 + + P + + L E+ DF++ L + + Sbjct: 37 QFENDLLAVEKYLETEIKPNFKKFNSIKEKLEYLFLENYYDFNVFKKYSSSFLISIFEKA 96 Query: 289 RDFAF---EYLGLQILYDRYFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFY 343 + + F ++G Y Y L N + E F R+ L E+ A+ + Sbjct: 97 KTYNFRFSSFMGAMKFYTTYALKSFDNKTYFE---HFEDRIVCNALLFGRGNEQDALTYL 153 Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + + + +TPT N+G + + SC+L V D++ I A L+K GG+ Sbjct: 154 DEMMTGRYQAATPTFLNAGKKQRGEYVSCYLLRVEDNMESIGRATTTGLQLSKRGGGVAY 213 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R GA I G ++ G+IP +K+ D NQ G+R+GA YL +H D+ +F Sbjct: 214 CLTNLREFGAPIKGIKNQATGIIPVMKILEDVFSYANQLGQRQGAGAVYLNAFHPDILKF 273 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R ++ +PD+ +N LFSP ++ + Sbjct: 274 LDSKRENADEKIRIKSLSLGVVVPDIAFHLARENKDMALFSPYDIQREYGK-PMSDISIT 332 Query: 523 ENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 E YE + I + ISA L++++ + FE+G+P+I F D N ++ + + S Sbjct: 333 EEYENLLNNPNITK-KYISARKLFQQIAEVQFESGYPFILFDDIANEKNSALNN-RIIMS 390 Query: 583 NLCTEITL------------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLCTEIT E CNLGS+N+ D T++ A++ Sbjct: 391 NLCTEITQINTPSILNTDLTYEQLGEDVCCNLGSLNIAKVME----DGANFGKTVKYAIK 446 Query: 631 VLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 LD++ + + + + N +RA+GLG M L I Y S EAV+ + Sbjct: 447 ALDSIAHLADLSSAPTIENGNSKNRAVGLGAMNLHGFLATNKIYYDSEEAVDFTNMFFYT 506 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDS-----------IGLLAEVRDELA 737 +++HA AS E A+E G + +FK + + G + + E+ E Sbjct: 507 MAYHAYKASNETAKETGFVFENFKNTKYADGSYFDKYTQCEENYWTPKTERVKELLKEYK 566 Query: 738 MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSG 797 + ++ W +L + +K G+ NS+ MA+APT +I+ + + S+ P + ++ Sbjct: 567 LAIPTKQDWIQLTEDIKKFGLANSHLMAVAPTGSISYLSSCTPSLQPIVSPIEIRKEGKV 626 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 V ++ + + + + Y G A+EI +I Sbjct: 627 GRVYVPAYKI-----------DVNNYMYYAKG------------------AYEIGVNPII 657 Query: 858 ESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLR 904 + S Q+ +DQA S+ L+L E + + L+ Y A+ + YY+R Sbjct: 658 DICSAAQQHVDQAISMTLFLTENATTRDLNKAYIYAFNKKCVSIYYIR 705 >gi|330984035|gb|EGH82138.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. lachrymans str. M301315] Length = 260 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 159/263 (60%), Positives = 204/263 (77%), Gaps = 5/263 (1%) Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL 728 + HIPYAS AVE AD+SME IS++AI AS +LA ERGAY+SF+GSLW QG+ P+DS + Sbjct: 1 MQHIPYASEAAVEFADKSMEAISYYAIQASCDLADERGAYASFQGSLWSQGILPLDSQEI 60 Query: 729 LAEVRD--ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 L R + ++++S L W +++RVK G+RNSN MAIAPTATI+NI GV+QSI+P+Y Sbjct: 61 LIAHRGEQYIEVDKSSTLDWAPVRERVKK-GIRNSNIMAIAPTATISNIVGVTQSIEPTY 119 Query: 787 QNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHA 846 QNLYVKSN+SG+FTV+N LV +LK R LWD M+++LK++DGS+ I+R+P DLK ++A Sbjct: 120 QNLYVKSNLSGEFTVINPHLVIDLKARGLWDAVMVNELKHYDGSVQQIDRVPQDLKTLYA 179 Query: 847 TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 TAFE++ WLI+ ASRRQKW+DQAQSLNLY+ SGKKLD YR AW GLKTTYYLR+ Sbjct: 180 TAFEVEVRWLIDGASRRQKWLDQAQSLNLYIAGASGKKLDTAYRMAWYRGLKTTYYLRAL 239 Query: 907 SATSVEKSTLKGVDGKLNAVPVT 929 +ATS EKST+ GKLNAV Sbjct: 240 AATSTEKSTIN--TGKLNAVSAQ 260 >gi|255683174|ref|YP_003084382.1| UL39 [Duck enteritis virus] gi|158343205|gb|ABW35295.1| ribonucleotide reductase subunit 1 [Anatid herpesvirus 1] gi|254839989|gb|ACT83535.1| UL39 [Anatid herpesvirus 1] Length = 810 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 157/595 (26%), Positives = 255/595 (42%), Gaps = 48/595 (8%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGG 399 F+ LSS + +TP + G +SC+L + + L E A + + GG Sbjct: 221 FFWSLSSQLVVPATPPMMFMGRTVGSTASCYLIDQRTTTNDDTVRSILNEVAPILQSRGG 280 Query: 400 LGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDV 459 +G + N +S+G++ LK+ + +A+N R VC Y+E WH D Sbjct: 281 VGIALHTLN--------QNARSKGLMAVLKMIDSLVMAINADSTRPTGVCVYIEPWHADT 332 Query: 460 EEFLDLRKNT-GDDRRRTHDMNTANWIPDLFMKRVT-----QNAGWTLFSPDEVSDLHDL 513 L ++ ++ R + +A W+PDL KR + F D S+L L Sbjct: 333 RAVLSMKGLLAPEEAMRCDHLFSALWVPDLLFKRYERYLNGEKDVMWTFFDDRASNLSKL 392 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 YG FE YE YE + I + ++ TG P+I KD N Sbjct: 393 YGDRFEREYEYYESSGFGVD-----SIPIREMMYSIVRSAATTGSPFIVLKDAFNRHYHL 447 Query: 574 QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRT 627 + SNLCTEI + + VCNL SINL ++ FD L +RT Sbjct: 448 DTQFDALSCSNLCTEIVHKADKDSNGVCNLMSINLSRCIVVDRAGRGRFDCTTLRRAVRT 507 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 A ++ ++ N + EK++ HR+IG+GL G + L + EA ++ Sbjct: 508 ATIFVNAMMLCNDYPTEKSRAGMERHRSIGIGLQGLHTTFLRLGLDMVCDEARKLNKRIA 567 Query: 688 EFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 E + A++ S EL + +S F S++ G F D + T + W Sbjct: 568 ELMLLEAMTTSCELCEHGLPKFSDFDESIYSSGRFHFDGWE---------DVELTEQYEW 618 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 DEL++RVKT G+ NS +A+ PT + + + VS+ P + NL+ K + +G+ N L Sbjct: 619 DELRERVKTSGLYNSQFIALMPTVSSSQVTEVSEGFTPLFSNLFNKVSTTGEILRPNPLL 678 Query: 807 VNELKQRDLWDEAMISDLKY---HDGSIGNIERIPDDLKKI--HATAFEIDPMWLIESAS 861 + EL+ ++ + L+ S + + + T FE + + L+ Sbjct: 679 MEELRAIYPDEKDRVEALEALESAQWSTVAAFGNRPECASLMKYKTVFEYNQIDLLNMCR 738 Query: 862 RRQKWIDQAQSLNLYLDEPS-----GKKLDFIYRQAWLMGLKT-TYYLRSRSATS 910 R ++D +QS +LY+ E S + + A+ GLKT YY R R AT+ Sbjct: 739 DRAPFVDHSQSTSLYITETSEGVLPASSIVKLLLHAYKTGLKTAAYYCRVRKATN 793 >gi|329116333|ref|ZP_08245050.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parauberis NCFD 2020] gi|326906738|gb|EGE53652.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus parauberis NCFD 2020] Length = 719 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 151/714 (21%), Positives = 280/714 (39%), Gaps = 82/714 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ + + + +++ + + LA+ +K E Sbjct: 32 KEALQAFFEENVIPNTKPFASITKKIEYLLKHDYIESEFIS-KYSKEFIEELASIIKNEN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + M A+ A E+ A + Sbjct: 91 FQFNSFMAAYKFYQQYALKTNDGEYYLESLEDRVMFNALYFA---DGNEELAKSIAIEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + + Y+ Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSPYSVEKEYGI-PYNYIDITAMYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSP----------QQHV 576 +I + I A L ++ + E+G+P+I D N +P + Sbjct: 327 ELVANPKITKTK-IKARDLETEISKLQQESGYPYIINIDTANKANPVDGKVIMSNLCSEI 385 Query: 577 GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + ++ + CNLGS N+L + ++I+ R L V Sbjct: 386 LQIQKPSVINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGASIKAMTRALTFVT 440 Query: 637 D-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D + K N GLG MG S L HI Y SPE+VE D +++ + Sbjct: 441 DSSQIEAVPTIKNGNQQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFMLMNYWTL 500 Query: 696 SASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPW 746 S +A+ER ++ F+ S + G + + + ++ + + + S W Sbjct: 501 VESNNIARERQTTFTGFENSKYADGSYFDKYVTGKFVPQTDFVKDLFKDHFIPQAS--DW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 + L++ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 559 ETLRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP--- 615 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + D + +A+++D +I+ + + Sbjct: 616 ----------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAAATQ 647 Query: 866 WIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 648 HVDQGLSLTLFLRSELPKELYEWKSESKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|15600690|ref|NP_254184.1| NrdJa [Pseudomonas aeruginosa PAO1] gi|9951832|gb|AAG08882.1|AE004962_6 NrdJa [Pseudomonas aeruginosa PAO1] Length = 734 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 145/625 (23%), Positives = 251/625 (40%), Gaps = 62/625 (9%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + +E F L + + + N+G + +C ++ Sbjct: 68 WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV EF+ ++ + R N + I D FM+ V Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242 Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P V D + + +E+ I + +R KV+ ++ A L Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 L + D +R + + SR EL + + G R ++ +IA Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT TI+ S I+PS+ + Y ++ L+ E ++ E +L Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRN------------LIREGRKTKEKVEVYSYELL 586 Query: 826 YHDGSI--GNIERIPD---DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-E 879 + + + D L TA + P ++ + QKW+D + S + + Sbjct: 587 AYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHMDIQAAAQKWVDSSISKTANVPTD 646 Query: 880 PSGKKLDFIYRQAWLMGLKTTYYLR 904 + IYR AW GLK R Sbjct: 647 YPFEDFKDIYRYAWHQGLKGCTTFR 671 >gi|288920762|ref|ZP_06415062.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Frankia sp. EUN1f] gi|288347838|gb|EFC82115.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Frankia sp. EUN1f] Length = 1009 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 117/609 (19%), Positives = 221/609 (36%), Gaps = 28/609 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G E + E E +L F ++P FN GT Q+S+CF+ V D + I Sbjct: 110 GYFASEDDAETFEHELTWMLLHQVFSFNSPVWFNVGTSAPQQVSACFILAVDDTMESILN 169 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 170 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 228 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+ EF++ + D R D + + V Sbjct: 229 RAAKMVVLDVDHPDIVEFVETKAREEDKIRALRDAGFDMDLGGRDIASVQYQNANNSVRV 288 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 ++ + G F++ R + +V + A L+ + +E P I + Sbjct: 289 NDEFMRAVVDGTSFDLR--------ARLDNRVIESVDARGLFTTIAQAAWECADPGIQYD 340 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 N G + +SN C+E + + CNL S+NL+ ++ FD + + Sbjct: 341 GTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASLNLMKFLRPDRTFDAEAFVA 396 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I + +R +G+G + L Y S +A Sbjct: 397 SVELIITAMDISICFADFPTPEITTVTRAYRQLGIGYANLGALLMASARAYDSEGGRSLA 456 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739 ++ A S ELA GAY F + VR ++ + Sbjct: 457 AAITSLMTATAYRRSAELAGTVGAYDGFARNADAHRRVVRKHAAANDAVRAVHTEDARLI 516 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG- 797 + W+ + G RN+ +APT TI + I+P + +K + G Sbjct: 517 AAASKEWERALSVGEKNGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGA 576 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATA---FEID 852 +VN + L+ +E + + G + + + + ++ A I Sbjct: 577 SMKIVNQTVPAALRALGYPEETTEAIVEFIAEHGHVVDAPGLRPEHYEVFDCAIGDRAIS 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q ++ A S + + + ++ IY + W +GLK R Sbjct: 637 PMGHVRMMAAVQPFLSGAISKTVNMPSTATVADVEEIYLEGWRLGLKALAIYRDNCKVGQ 696 Query: 912 EKSTLKGVD 920 + +KG Sbjct: 697 PLTDVKGAK 705 >gi|225351963|ref|ZP_03742986.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157210|gb|EEG70549.1| hypothetical protein BIFPSEUDO_03568 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 727 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 162/732 (22%), Positives = 282/732 (38%), Gaps = 88/732 (12%) Query: 215 NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMM 274 ++ + A L ++ K Q + + + P + +RL+ + Sbjct: 23 DWHSLNAMLNLYD--KQGRIQFDKDIQAVREYVEKHVLPNTVRFNSTQDRLSRLIADGYY 80 Query: 275 D------FDLVYLANDLKYERDFAF---EYLGLQILYDRYFLH--INGSRIEM-PQAFFM 322 D +D +L + D F +LG + Y L +E PQ Sbjct: 81 DESVFAQYDAEFLDRFYRNVDDCGFEFDTFLGAFKFHRSYALKTFDGKQYLENFPQ---- 136 Query: 323 RVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLY 381 R A A ++ L S F +TPT N G + SCFL + D++ Sbjct: 137 RAAAVALALAAGDHAAAESYFEELISGRFQPATPTFLNLGKAQRGEAVSCFLVRIEDNME 196 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I + L+K GG+ + +R GA I +S GV+P +K+ D+ NQ Sbjct: 197 SISRGINAALQLSKRGGGVALLLSNLREAGAPIKRIKHQSSGVVPVMKLLEDSFSYANQL 256 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G R+GA YL H D+ FLD ++ D++ R + IPD+ + ++ L Sbjct: 257 GARQGAGAVYLNAHHPDIMHFLDTKRENADEKIRIKSLALGVVIPDITFELAKRHEPMAL 316 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPW 560 FSP +V + G+ F + + + ++ + I A + + + FE+G+P+ Sbjct: 317 FSPYDVERVM---GRPFADVSISENYRNMVDDERIGKTYIDAREFFMTLAELQFESGYPY 373 Query: 561 ITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 + F+D N +P + V + E + CNLGS+N+ Sbjct: 374 MVFEDTVNRANPIDGRIAMSNLCSEILQVQEPSTYHEDLSYNHVGRDVSCNLGSLNIAKA 433 Query: 611 FANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 L T+ A+R L +V + + + +++N AIGLG M L Sbjct: 434 MDG------DLGRTVERAIRALTSVSEHTDIACVPSIRRANDEGHAIGLGQMNLHGFLAR 487 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGL 728 I Y SPEA++ D +++HA AS ELA ERG ++ F+ S + + + Sbjct: 488 ESIMYGSPEALDFTDMYFMTVAYHAYRASHELAVERGTRFAGFERSAYAKPAGAGNYFDK 547 Query: 729 -------LAEVRDELAMNRTSR-------LPWDELKKRVKTIGMRNSNCMAIAPTATIAN 774 LA ++A R W L+ + G+ N A+ PT +I+ Sbjct: 548 YTNGERSLAPKTGKIASLFARRGIHIPNEDDWRRLRDDIIRDGIFNQYLQAVPPTGSISY 607 Query: 775 ICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGN 833 I + SI P + ++ G ++ N+ Sbjct: 608 INHSTSSIHPIASKIEIRKEGKIGRIYYPAPYMTND------------------------ 643 Query: 834 IERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQA 892 + A A+EI ++++ + + +DQ SL L+ + + + L+ A Sbjct: 644 -------NLQYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATTRDLNKAQIYA 696 Query: 893 WLMGLKTTYYLR 904 W G+KT YY+R Sbjct: 697 WRKGIKTLYYIR 708 >gi|29135242|ref|NP_803872.1| ORF306 [Pseudomonas phage phiKZ] gi|18996771|gb|AAL83207.1|AF399011_306 PHIKZ306 [Pseudomonas phage phiKZ] Length = 779 Score = 292 bits (746), Expect = 3e-76, Method: Composition-based stats. Identities = 167/806 (20%), Positives = 294/806 (36%), Gaps = 86/806 (10%) Query: 146 KIMMDDGTLISFNSKRLEMIVEEACSGLQD-VSSKIVLSETYKNMYDGLSESDLETALIF 204 I+ DGT +++ ++ E A L D V V+ + + + D S +L+ LI Sbjct: 21 TIIKLDGTEEAYSPAKINGWGEWAAQHLGDKVDWSSVVMDAVQALGDKTSSQELQLQLIE 80 Query: 205 SSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGV 264 L K +Y + R LR++ KA M+ Sbjct: 81 EC--LNRKTWSYYLMAGRLYAIYLRKKFYGLNGIPTVKALQTRMRK-------------- 124 Query: 265 KARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRY--FLHINGSRIEMPQAFFM 322 ++ + + + ++ D + L + +Y G E Q +M Sbjct: 125 DGIIVKLDYSSKEYAQIEKIIDHDLDLLCPHFSLHHIRGKYALRNRKTGQEYETAQFVYM 184 Query: 323 RVAMGLALKE--TEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 R+AM LA KE + +Y LLS+ TP N GT+ +SC L D+ Sbjct: 185 RMAMALAEKEPAETRMTHVENYYKLLSNKILSAPTPNYVNLGTKLRGFASCCLFASGDNG 244 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQ 440 + ++ + S G+G + R +G I QG P++ V A N Sbjct: 245 VSLAMGDYIANIMTQSSAGIGVNLM-TRSIGDPIRNGLIIHQGKKPYIDVIGKAVRA-NL 302 Query: 441 GGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF-MKRVTQNAGW 499 R GAV Y + + + LR + R+ D++ A F K ++ Sbjct: 303 QNGRGGAVTCYYSAFDPEADMITQLRNPRSTEDRKNRDLHYAFLSNKFFAKKAAQKDGMI 362 Query: 500 TLFSPDEVSDLHDLYG----KEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLF 554 +F+P DLHD + +F YE YE K + ++A L + ML + Sbjct: 363 FVFNPFTAPDLHDAFYSGDIDKFIKLYEKYEADP-----KFEKTYVNARDLLKSMLVEAY 417 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS----------SSEETAVCNLGS 604 ETG + D N +P ++SSNLC EI + SSE+ + + Sbjct: 418 ETGTIYSAQIDELNHHTPF--KEPIYSSNLCLEIAEPTKPYYRMEDLYSSEDHGRGEIAT 475 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQ 664 +L A +N D A++++D I + + + G+G+MG Sbjct: 476 CSLAAIAVDNVPDKQTYEMAAYYALKMIDYCILNAEYAFPHLALTAKNRMSAGVGIMGLA 535 Query: 665 SALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPID 724 + + + Y+S E + I AS+++++ERG + W +G P Sbjct: 536 THMARAGLKYSSDAGKAEIHFIAERHMYFLIKASLKISKERGNAPWIHKTKWPEGWTPRK 595 Query: 725 SIGLLAEVRDELAMNRTSRLPWDELKKRVKTI-GMRNSNCMAIAPTATIANICGVSQSID 783 + + + PWDEL+K +K G+ +S A P + G + Sbjct: 596 TYNKSVDTI--IEGGFEELYPWDELEKEIKENGGIAHSVLAAYMPGEASSKALGSTNGPY 653 Query: 784 PSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKK 843 P + + K++ + DD Sbjct: 654 PVRRLILNKTDNGARVLWAAPY--------------------------------GDDDSY 681 Query: 844 IHATAFEIDPMWLIESASRRQKWIDQAQSLNLY-----LDEPSGKKLDFIYRQAWLMGLK 898 ++ +A++I LI+ + QKW DQ S +LY ++ S ++ + G+K Sbjct: 682 VYESAYDIPTKDLIDCYAIIQKWTDQTISADLYRRIVGSEKISSNEMLGNHFYMVKRGMK 741 Query: 899 TTYYLRSRSATSVEKSTLKGVDGKLN 924 T YY+ +A ++ +L+ N Sbjct: 742 TRYYVNLETAAGLDIKSLERAVEVTN 767 >gi|77414135|ref|ZP_00790301.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] gi|77159805|gb|EAO70950.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] Length = 722 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 170/724 (23%), Positives = 303/724 (41%), Gaps = 79/724 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E + L + + + ++ ++G Y+ Y L +R Sbjct: 52 EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFTFLNFMGALKFYNAYALKTEDNR 111 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + + + RV M EK A + + + + F +TPT N+G + + SC+ Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ + L+K GG+ T +R GA I G ++ G++P +K+ Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D+ NQ G+R+GA YL H +V FLD ++ D++ R ++ IPD+ + Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 N LFSP D+ +YGK E + + + ISA L++ + Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599 + FE+G+P+I F+D N ++P + G + SNLC+EI + Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTGSQFSEDLTFTKVGHDVC 407 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSIN+ D++KL + A+ + D++ + KKSN + A+GLG Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKSNAANHAVGLG 464 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 +M L HI Y S EA++ D ++++A AS LA+E+G + F S + G Sbjct: 465 VMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + E + E + S+ W +L + +K IG+ N++ +A+APT + Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ + + S+ P + V+ + V ++ Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618 Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 +I D + A+E+ P +I A+ QK +DQA SL L++ + + + L+ Y Sbjct: 619 ----KIDADNYVYYKKGAYEVGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAY 674 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 QA+ + YY+R R + S + + + + Sbjct: 675 IQAFKQKCASIYYVRVR------------------QDILEGSESYDDDMLDDFTSSDLED 716 Query: 950 CEVC 953 C+ C Sbjct: 717 CQSC 720 >gi|319744437|gb|EFV96794.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae ATCC 13813] Length = 722 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 172/748 (22%), Positives = 307/748 (41%), Gaps = 80/748 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E + L + + + ++ Sbjct: 29 KEAVEQYMIEHVEPNTMTFTSL-IEKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYTKK 87 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++G Y+ Y L +R + + + RV M EK A + + + + Sbjct: 88 FAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLAN 146 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F +TPT N+G + + SC+L + D++ I A+ + L+K GG+ T +R Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLR 206 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD ++ Sbjct: 207 EFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRE 266 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ IPD+ + N LFSP D+ +YGK E + Sbjct: 267 NADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISITEEYE 323 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + + ISA L++ + + FE+G+P+I F+D N ++P + G + SNLC+E Sbjct: 324 TLLANADIRKTFISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383 Query: 588 ITLN------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGSIN+ D++KL + A+ + Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAMDQ-AADFEKLIANSIRALDRISRT 442 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D++ + KK N + A+GLG M L HI Y S EA++ D ++++A Sbjct: 443 SDLD--SAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAF 500 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWD 747 AS LA+E+G + F S + G + E + E + S+ W Sbjct: 501 KASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWR 560 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L + +K IG+ N++ +A+APT +I+ + + S+ P + V+ + V ++ Sbjct: 561 KLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-- 618 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866 +I D + A+E+ P +I A+ QK Sbjct: 619 ----------------------------KIDADNYVYYKKGAYEVGPEAIINIAAAAQKH 650 Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 IDQA SL L++ + + + L+ Y QA+ + YY+R R Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------------------Q 692 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + S + + + +C+ C Sbjct: 693 DILEGSESYDDDMLDDFTSSDLEDCQSC 720 >gi|322391985|ref|ZP_08065449.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus peroris ATCC 700780] gi|321145211|gb|EFX40608.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus peroris ATCC 700780] Length = 719 Score = 291 bits (745), Expect = 3e-76, Method: Composition-based stats. Identities = 160/712 (22%), Positives = 280/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + L L +K + Sbjct: 32 KEALDAFFKENVVPNSMVFDSITDK-INYLIEHNYIETAFIKKYRPEFLEELYQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGNEAIATDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EGGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEREYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLKMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + + E+ + + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYANGTYFDKYVTGEFVPKSDRIKELFKNVFIPSAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+ +VK G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LRDKVKVDGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPQGLYEWKSENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|25010528|ref|NP_734923.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae NEM316] gi|23094881|emb|CAD46099.1| Unknown [Streptococcus agalactiae NEM316] Length = 722 Score = 291 bits (745), Expect = 4e-76, Method: Composition-based stats. Identities = 170/724 (23%), Positives = 301/724 (41%), Gaps = 79/724 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E + L + + + ++ ++G Y+ Y L +R Sbjct: 52 EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFAFLNFMGALKFYNAYALKTEDNR 111 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + + + RV M EK A + + + + F +TPT N+G + + SC+ Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ + L+K GG+ T +R GA I G ++ G++P +K+ Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D+ NQ G+R+GA YL H +V FLD ++ D++ R ++ IPD+ + Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 N LFSP D+ +YGK E + + + ISA L++ + Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599 + FE+G+P+I F+D N ++P + G + SNLC+EI + Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTASQFSEDLTFTKVGHDVC 407 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSIN+ D++KL + A+ + D++ + KK N + A+GLG Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKGNAANHAVGLG 464 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 M L HI Y S EA++ D ++++A AS LA+E+G + F S + G Sbjct: 465 AMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + E + E + S+ W +L + +K IG+ N++ +A+APT + Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ + + S+ P + V+ + V ++ Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618 Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 +I D + A+E+ P +I A+ QK IDQA SL L++ + + + L+ Y Sbjct: 619 ----KIDADNYVYYKKGAYEVGPEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAY 674 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 QA+ + YY+R R + S + + + + Sbjct: 675 IQAFKQKCASIYYVRVR------------------QDILEGSESYDDDMLDDFTSSDLED 716 Query: 950 CEVC 953 C+ C Sbjct: 717 CQAC 720 >gi|308235082|ref|ZP_07665819.1| ribonucleotide-diphosphate reductase subunit alpha [Gardnerella vaginalis ATCC 14018] Length = 698 Score = 291 bits (745), Expect = 4e-76, Method: Composition-based stats. Identities = 159/684 (23%), Positives = 269/684 (39%), Gaps = 75/684 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGS 312 E I + L + +LG Y Y L Sbjct: 39 HERLNYLISNYYYNGNVFGKYSSEFLDKFYEHAEAAHHTFGTFLGAFKFYTSYALKTFDG 98 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 + + A+ L L + EK A+ + + + + F +TPT N G + SC Sbjct: 99 KQYLENFAQRAAAVALELAD-GDEKAALNYLDEMLAGRFQPATPTFLNLGKAQRGEAVSC 157 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I + L+K GG+ T +R LGA I +S GV+P +K+ Sbjct: 158 FLVRLEDNMESIARGINSALQLSKRGGGVALLLTNLRELGAPIKRIENQSSGVVPVMKLL 217 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA Y+ H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 218 EDSFSYANQLGARQGAGAVYISAHHPDIMRFLDTKRENADEKIRIKSLSLGVVIPDITFE 277 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550 + LFSP D+ YGK F ++ +K I A + + Sbjct: 278 LAKRKEKMALFSP---YDVEREYGKPFADISVTEHYDEMVANPRIHKKYIDAREFFMTLA 334 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETA 598 + FE+G+P+I F+D N +P G + SNLC+EI S Sbjct: 335 EIQFESGYPYILFEDTVNRTNPI--EGRITMSNLCSEILQTQEASTYNADLSYSHVGRDI 392 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ L +++ AVR L +V + + ++ ++ N AIG Sbjct: 393 SCNLGSLNIAKAMDG------DLGTSVDLAVRALTSVSEHTSIDSVPSIRRGNAEGHAIG 446 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLW 716 LG M L H+ Y S EA++ D +++HA AS LA ERG ++SFK S + Sbjct: 447 LGQMNLHGFLAREHMQYGSEEALDFTDMYFMTVAYHAYKASHALAVERGTAFASFKTSAY 506 Query: 717 DQGVFPIDSIGLL--------------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSN 762 + + ++ + + W++L+ + G+ N Sbjct: 507 AKPAGKGNYFDKYTDGSRSLEPKTQKVRDLFARFNVAIPTVSDWEQLRDEILRDGIYNEY 566 Query: 763 CMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMI 821 A+ PT +I+ I + SI P + ++ G +++ N+ Sbjct: 567 LQAVPPTGSISYINHSTSSIHPIASRIEIRKEGKVGRVYYPAAYMTNDNM---------- 616 Query: 822 SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-P 880 + A+EI +I++ + + +DQ SL L+ + Sbjct: 617 ---------------------QYFKDAYEIGWKAIIDTYAEATQHVDQGLSLTLFFPDTT 655 Query: 881 SGKKLDFIYRQAWLMGLKTTYYLR 904 + + L+ AW G+KT YY+R Sbjct: 656 TTRDLNKAQIYAWRKGIKTLYYIR 679 >gi|77411320|ref|ZP_00787669.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] gi|77162656|gb|EAO73618.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] Length = 722 Score = 291 bits (745), Expect = 4e-76, Method: Composition-based stats. Identities = 172/748 (22%), Positives = 307/748 (41%), Gaps = 80/748 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E + L + + + ++ Sbjct: 29 KEAVEQYMIEHVEPNTMTFTSL-IEKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKK 87 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++G Y+ Y L +R + + + RV M EK A + + + + Sbjct: 88 FAFLNFMGALKFYNAYALKTEDNRYYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLAN 146 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 F +TPT N+G + + SC+L + D++ I A+ + L+K GG+ T +R Sbjct: 147 RFQPATPTFLNAGKKRRGEYISCYLLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLR 206 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V FLD ++ Sbjct: 207 EFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRE 266 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ IPD+ + N LFSP D+ +YGK E + Sbjct: 267 NADEKIRIKSLSLGLVIPDITFELAKANKDMALFSP---YDIERVYGKPMSDISITEEYE 323 Query: 529 ADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + + ISA L++ + + FE+G+P+I F+D N ++P + G + SNLC+E Sbjct: 324 TLLANADIRKTFISARKLFQTIAELHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSE 383 Query: 588 ITLN------------SSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGSIN+ D++KL + A+ + Sbjct: 384 IAQVNTASQFSEDLTFTKVGHDVCCNLGSINIARAMDQ-AADFEKLIANSIRALDRISRT 442 Query: 636 IDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 D++ + KK N + A+GLG M L HI Y S EA++ D ++++A Sbjct: 443 SDLD--SAPSIKKGNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAF 500 Query: 696 SASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWD 747 AS LA+E+G + F S + G + E + E + S+ W Sbjct: 501 KASNHLAKEKGTFEGFSESSYADGSYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWR 560 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L + +K IG+ N++ +A+APT +I+ + + S+ P + V+ + V ++ Sbjct: 561 KLVQSIKEIGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-- 618 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKW 866 +I D + A+E+ P +I A+ QK Sbjct: 619 ----------------------------KIDADNYVYYKKGAYEVGPEAIINIAAAAQKH 650 Query: 867 IDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNA 925 IDQA SL L++ + + + L+ Y QA+ + YY+R R Sbjct: 651 IDQAISLTLFMTDQATTRDLNKAYIQAFKQKCASIYYVRVR------------------Q 692 Query: 926 VPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + S + + + +C+ C Sbjct: 693 DILEGSESYDDDMLDDFTSSDLEDCQSC 720 >gi|315613101|ref|ZP_07888011.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus sanguinis ATCC 49296] gi|315314663|gb|EFU62705.1| ribonucleoside-diphosphate reductase subunit alpha [Streptococcus sanguinis ATCC 49296] Length = 719 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 159/712 (22%), Positives = 282/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + L L +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFLKKYRPEFLEELHQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAT--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+++V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|293365330|ref|ZP_06612047.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus oralis ATCC 35037] gi|291316780|gb|EFE57216.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus oralis ATCC 35037] Length = 719 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 158/712 (22%), Positives = 281/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + L L +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFLKKYRPEFLEELHQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y S E+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAT--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+++V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|241116846|ref|XP_002401636.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes scapularis] gi|215493180|gb|EEC02821.1| ribonucleoside-diphosphate reductase large chain, putative [Ixodes scapularis] Length = 382 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 124/430 (28%), Positives = 190/430 (44%), Gaps = 57/430 (13%) Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---VVHSSNLCTEITL 590 KV K+ A LW K+LT ETG P++ F D N P+ H V SNLC+EITL Sbjct: 1 KKVVNKVRARDLWVKLLTTRIETGEPYLLFIDSVNKSIPEHHKKLGLQVKMSNLCSEITL 60 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAK--- 647 + + L + ++ I + + LDNV++ + Sbjct: 61 PTGIDHLGKSRTAVCCLSSLNLEYYEEWKDDKEFIHSIMLFLDNVLEDFINKAPDTMARA 120 Query: 648 -KSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 S R++GLG+MGF S L + +P S + E+IS A AS+E+ +E+G Sbjct: 121 KYSALRERSVGLGVMGFHSFLQMKKVPIESVMTKVWNKKIFEYISAEADKASIEIGKEKG 180 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 D++ + R SN AI Sbjct: 181 VCP--------------DALDAGSNER--------------------------FSNKTAI 200 Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APTA+I+ I G S I+P N +V+ ++G F V N L L+++ ++ + S + Sbjct: 201 APTASISVIAGNASPGIEPFAANSFVQKTLTGSFNVRNKHLEKLLEEKGFNNDQVWSSIA 260 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884 H+GS+ ++ + ++ K++ TA+EID WLIE AS R +I QAQSLN++L S K Sbjct: 261 THEGSVQHLTFLSEEEKQVFKTAYEIDQNWLIELASDRTPYITQAQSLNIFLPGNISKKY 320 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 L+ I+ +AW G+K+ YY RS S +K + VP D + Sbjct: 321 LNNIHFKAWKKGVKSLYYCRSTSIQRADKVSHD--------VPKADFKDLEKQNDKLAEA 372 Query: 945 TSDTECEVCQ 954 + EC CQ Sbjct: 373 GNYEECLACQ 382 >gi|257882207|ref|ZP_05661860.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257817865|gb|EEV45193.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] Length = 719 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 283/709 (39%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ K + + +E ++A + F + L L + Sbjct: 32 KEALVAFFEENVKPNTMTFLSIMEKINYLIDQEYIEAEFIQLYSPSF-IEKLYQFLDEQH 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RVA E+ A+ + + Sbjct: 91 FSFKSFMAAYKFYSQYALKTNDGSAYLETYED---RVAFNALYFANGDEELALALADEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ R +L SCFLT V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRKRRGELVSCFLTQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSAK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGVIVPDKFYELTRKNEDMYLFSPYSVEKEYGV-PFSYVNITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 I+ + I A L ++ + E+G+P++ D N G + SNLC+ Sbjct: 327 HLVANPNIRKQK-IKARDLENEISKLQQESGYPYVINIDTANR--ENPIDGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI +E V S NL + N ++RT R L + D Sbjct: 384 EILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMQSPNFGQSVRTMTRALTFITDAS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + + N + IGLG MG + L + Y S ++++ + +++ + S Sbjct: 444 DIDVVPPIQNGNKLNHTIGLGAMGLHTYLAKEQMEYGSEDSLDFTNIYFMLLNYWTLVES 503 Query: 699 VELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKK 751 +A+ER + +F+ S + G + + +V+ + + W+ LK+ Sbjct: 504 NNIARERKQVFHNFEKSAYADGTYFEKYVTGEFQPKSEKVKALFEGIFIPTAEDWNALKQ 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I S SI P + + + G +L N Sbjct: 564 AVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEERQEKKIGKIYYPAPYLSN-- 621 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + + +A+++D +I+ + Q+ +DQ Sbjct: 622 -----------------------------ETIPYYTSAYDMDMRKVIDVYAMAQQHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L++ + + + L+ A+ G+K+ YY+R+ Sbjct: 653 MSLTLFMRSEIPEGIYEWKTTTKQTTRDLNIFRHYAFHKGIKSIYYVRT 701 >gi|313665033|ref|YP_004046904.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma leachii PG50] gi|312949963|gb|ADR24559.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma leachii PG50] Length = 720 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 167/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%) Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + + ++R+ I + A L+ + + +K + + + Y Sbjct: 15 DEYIKLNARSKIFSKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 65 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 +E + + L N ++G ++ Y L + + Sbjct: 66 ----LLENQYYDSEILNKYSFDQISQLNNYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 121 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 + RV M +A + F +TPT N+ +H + SC+L Sbjct: 122 YLETYT-DRVLMNALFLGNGNFNKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 180 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D++ I + + L+K GG+ T +R G+ I +G S G IP +K+ D Sbjct: 181 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 240 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +Q G+R+GA Y+ H D+ LD ++ D++ R ++ IPD+ + Sbjct: 241 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 300 Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP +V + E YE E IK ISA + + Sbjct: 301 RDNKDMALFSPYDVQKTYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 355 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598 + FE+G+P+I F+D N R+ G + SNLC+EI S++ E Sbjct: 356 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDI 415 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + + + +I A+ LD V + + + KK N + A+G Sbjct: 416 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLNASPSIKKGNAENHAVG 471 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L I Y SPEAV+ + ++++A AS +LA+E ++SF S + Sbjct: 472 LGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAKEFEKFASFDQSRFA 531 Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G D + E+ + + S+ W +L + +K G+ NS+ MA+ Sbjct: 532 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAV 591 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + V+ V ++ +N Y Sbjct: 592 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 640 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 G+ +E+ P +I A+ Q+ +DQA SL L++ + + + L Sbjct: 641 AMGT------------------YELGPDPIINIAAAAQQHVDQAISLTLFMTDKATTRDL 682 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + Y A+ G + YY+R Sbjct: 683 NRAYVNAFKQGCSSIYYVR 701 >gi|329121527|ref|ZP_08250151.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister micraerophilus DSM 19965] gi|327469442|gb|EGF14912.1| ribonucleotide-diphosphate reductase subunit alpha [Dialister micraerophilus DSM 19965] Length = 730 Score = 291 bits (744), Expect = 5e-76, Method: Composition-based stats. Identities = 173/750 (23%), Positives = 307/750 (40%), Gaps = 78/750 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + K + + + L E ++ + + + + E Sbjct: 31 KEAVQEYIKTQIEPSMMKFSTL-EEKLKYLVDNNYYDEEILNRYSKTFIREI-YAIGKEY 88 Query: 290 DFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F +G Y Y L + + + + F R M E A + + S Sbjct: 89 DFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKKLVGDILS 147 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N+G + + SC+L + D++ I + + L+K GG+ T + Sbjct: 148 NRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLTNL 207 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R A I G +S GV+P +K+ DT NQ G+R+GA YL H ++ +FLD ++ Sbjct: 208 REGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDTKR 267 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD+ + + LFSP D++ +YGK E Sbjct: 268 ENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDVYKVYGKPMTDISITKEY 324 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC- 585 + KV + I+A ++ + + FE+G+P+I ++D N R+P + G + SNLC Sbjct: 325 ENLLRNDKVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRIVMSNLCS 384 Query: 586 -----------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 TE + CNLGSIN+ D I AV LD Sbjct: 385 EIAQVSTASTYTEDMSYYHVGQDICCNLGSINIAEAMK----DGKNFGEMIGRAVEALDR 440 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V + + K+ N + AIGLG M L HI Y +PEAV+ D +++ Sbjct: 441 VSRASDLNCAPSIKRGNEENHAIGLGAMNLHGFLATHHIYYDTPEAVDFTDMFFYATAYY 500 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRTSRLP 745 A AS +A ++GA++ F S + G + L E+ ++ ++ Sbjct: 501 AFKASHYMAMKKGAFTGFADSEYADGSYFKKYTEELNVPKTEKVKELFEKYNFYIPTQED 560 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L + +K G+ N++ +A+APT +I+ + + S+ P + V+ V ++ Sbjct: 561 WKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRVYVPAY 620 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQ 864 I D+ K + A+E+ P +I+ A+ Q Sbjct: 621 ------------------------------EIDDENYKYYEKGAYEVGPDAIIDVAAAAQ 650 Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 K +DQA ++ L++ + + L+ Y +A+ + YY+R + + L+G + Sbjct: 651 KHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVR------IRQDVLEGSE--- 701 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + + +C EC+ C Sbjct: 702 ---KFEEDSIIKNENKEVRNCDGSEECQTC 728 >gi|290956950|ref|YP_003488132.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces scabiei 87.22] gi|260646476|emb|CBG69573.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces scabiei 87.22] Length = 965 Score = 291 bits (744), Expect = 5e-76, Method: Composition-based stats. Identities = 123/626 (19%), Positives = 225/626 (35%), Gaps = 32/626 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQVFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DVE+F+ + + R D + + + ++D Sbjct: 243 VDHPDVEDFIATKVKEEEKIRALRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E E R GE V K+ A AL+RK+ + P I + N Sbjct: 297 FMTAVENGTEFGLRARMTGE--VIEKVDAKALFRKLAEAAWACADPGIQYDGVINNWHTC 354 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G + +SN C+E + CNL S+NL+ F+ ++ A + Sbjct: 355 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDDGLGRQSFEVERFAKVVELV 410 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSEGGRALAGAITS 470 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGL--LAEVRDELA--MNRTSRL 744 ++ A S ELA G Y + + A D+L + + Sbjct: 471 LMTGTAYKRSAELAAVVGPYDGYARNADAHNRVMKQHSDANGTAVRMDDLDSPVWAAATE 530 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RNS +APT TI + ++P + + K G +V Sbjct: 531 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 590 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + G++ + + + ++ A I PM + Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIADHGNVIDAPGLKQEHYEVFDCAMGERAISPMGHV 650 Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + + ++++ IY +AW +G+K R S Sbjct: 651 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYFEAWKLGVKALAIYRDNCKVGQPLSAK 710 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPS 942 K + + Sbjct: 711 TKESEKAEITEKAEETIRATVEKVVE 736 >gi|158313087|ref|YP_001505595.1| vitamin B12-dependent ribonucleotide reductase [Frankia sp. EAN1pec] gi|158108492|gb|ABW10689.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Frankia sp. EAN1pec] Length = 1011 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 122/609 (20%), Positives = 228/609 (37%), Gaps = 28/609 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G E++ E E +L F ++P FN GT Q+S+CF+ V D + I Sbjct: 110 GYFASESDAEIFEHELTWMLLHQVFSFNSPVWFNVGTAAPQQVSACFILAVDDTMESILN 169 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 170 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 228 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H DV EF++ + D R D + + V Sbjct: 229 RAAKMVVLDVDHPDVVEFVETKAREEDKIRALRDAGFDMDLGGRDIASVQYQNANNSVRV 288 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 ++ + G F++ R + +V + A L+R + +E P I + Sbjct: 289 NDEFMRAVVDGTSFDLR--------ARLDNRVIESVDARGLFRTISQAAWECADPGIQYD 340 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 N G + +SN C+E + + CNL S+NL+ ++ FD + + Sbjct: 341 GTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASLNLMKFLRPDRTFDTETFVA 396 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 ++ + +D I + K +R +G+G + L Y S +A Sbjct: 397 SVELIITAMDISICFADFPTPEITKVTRAYRQLGIGYANLGALLMASARAYDSDGGRALA 456 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739 ++ A S ELA GAY F + VR +E + Sbjct: 457 AAITSLMTATAYRRSAELAGTVGAYDGFARNADAHRRVVRKHSAANDAVRTVHAEEARLI 516 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG- 797 + W+ + G RN+ +APT TI + I+P + +K + G Sbjct: 517 TAASKEWERALSVGEKHGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGA 576 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDLKY--HDGSIGNIERIPDDLKKIHATA---FEID 852 +VN + L+ +E + + ++Y G + + + + ++ A I Sbjct: 577 SMKIVNQTVPAALRALGYAEETIEAIVEYIAEHGHVVDAPGLRTEHYEVFDCAIGDRAIS 636 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q ++ A S + + + +++ IY + W +GLK R Sbjct: 637 PMGHVRMMAAVQPFLSGAISKTVNMPATATVAEVEEIYLEGWRLGLKALAIYRDNCKVGQ 696 Query: 912 EKSTLKGVD 920 + +KG Sbjct: 697 PLTDVKGAK 705 >gi|322376537|ref|ZP_08051030.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. M334] gi|321282344|gb|EFX59351.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. M334] Length = 719 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 156/712 (21%), Positives = 288/712 (40%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + + ++ + + +F L ++ +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSITDKIDYLIEHDYIETTFIKKYRPEF-LEEMSQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A++ N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAVAIDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y SPE+VE +++ + Sbjct: 443 SHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + +G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYAKGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+ +V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LRDKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + + + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|212716022|ref|ZP_03324150.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM 16992] gi|212661389|gb|EEB21964.1| hypothetical protein BIFCAT_00934 [Bifidobacterium catenulatum DSM 16992] Length = 698 Score = 290 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 151/682 (22%), Positives = 257/682 (37%), Gaps = 77/682 (11%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH--INGSR 313 R I +G + L ++ +LG + Y L Sbjct: 42 LSRLIADGYYDESVFAQYDTEFLDRFYRNVDECGFEFDTFLGAFKFHRSYALKTFDGKQY 101 Query: 314 IEM-PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 +E PQ R A A ++ L S F +TPT N G + SC Sbjct: 102 LENFPQ----RAAAVALALAAGDHAAAESYFEELVSGRFQPATPTFLNLGKAQRGEAVSC 157 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D++ I + L+K GG+ + +R GA I +S G++P +K+ Sbjct: 158 FLIRIEDNMESISRGINAALQLSKRGGGVALLLSNLREAGAPIKRIKHQSSGIVPVMKLL 217 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G R+GA YL H D+ FLD ++ D++ R + IPD+ + Sbjct: 218 EDSFSYANQLGARQGAGAVYLSAHHPDIMHFLDTKRENADEKIRIKSLALGVVIPDITFE 277 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550 ++ LFSP +V + G+ F + + + ++ + I A + + Sbjct: 278 LAKRHERMALFSPYDVERVM---GRPFADVSISENYRNMVDDERIGKTYIDAREFFMTLA 334 Query: 551 TMLFETGHPWITFKDPCNIRSP----------QQHVGVVHSSNLCTEITLNSSSEETAVC 600 + FE+G+P++ F+D N +P + V + E C Sbjct: 335 ELQFESGYPYMVFEDTVNRANPIDGRIAMSNLCSEILQVQEPSTYHEDLSYDHVGRDVSC 394 Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLG 659 NLGS+N+ L T+ A+R L +V + + + +++N AIGLG Sbjct: 395 NLGSLNIAKAMDG------DLGRTVERAIRALTSVSERTDIACVPSIRRANDEGHAIGLG 448 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQ 718 M L I Y SPEA++ D +++HA AS ELA ERG + F+ S + + Sbjct: 449 QMNLHGFLARESIMYGSPEALDFTDMYFMTVAYHAYRASHELAVERGTRFVGFERSAYAK 508 Query: 719 GVFPIDSIGLLAEVRDELAMNR--------------TSRLPWDELKKRVKTIGMRNSNCM 764 + LA W L+ + G+ N Sbjct: 509 PTGAGNYFDKYTNGERPLAPKTGKVASLFARRGIHIPDEDDWRRLRDDIIRDGIFNQYLQ 568 Query: 765 AIAPTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISD 823 A+ PT +I+ I + SI P + ++ G ++ N+ Sbjct: 569 AVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRIYYPAPYMTND-------------- 614 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSG 882 + A A+EI ++++ + + +DQ SL L+ + + Sbjct: 615 -----------------NLQYFADAYEIGWKAIVDTYAEATRHVDQGLSLTLFFPDTATT 657 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + L+ AW G+KT YY+R Sbjct: 658 RDLNKAQIYAWRKGIKTLYYIR 679 >gi|329939982|ref|ZP_08289264.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces griseoaurantiacus M045] gi|329300808|gb|EGG44704.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces griseoaurantiacus M045] Length = 969 Score = 290 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 122/632 (19%), Positives = 230/632 (36%), Gaps = 32/632 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 125 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 184 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 243 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DVE F+ + + R D + + V ++ Sbjct: 244 VDHPDVENFIQTKVKEEEKIRALRDAGFDMDLGGDDITSVQYQNANNSVRVNDTFMKAVE 303 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 G +F R +V +I A +L+RKM + P I + D N Sbjct: 304 TGGKF--------GLTSRMTGEVIEEIDAKSLFRKMAEAAWACADPGIQYDDTINHWHTC 355 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G ++ SN C+E + CNL S+NL+ + F+ ++ + Sbjct: 356 PESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGQGHQSFETERFQKLVELV 411 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S +A Sbjct: 412 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAITS 471 Query: 689 FISFHAISASVELAQERGAYSSFKGS--LWDQGVFPIDSIGLLAEVRDELA--MNRTSRL 744 ++ A S ELA G Y + + + + +A D+L + + Sbjct: 472 LMTGTAYRRSAELASVVGPYDGYARNAQPHQRVMKQHADANAVAPRMDDLDTPVWAAATE 531 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++++ + G RNS +APT TI + ++P + + K G +V Sbjct: 532 AWQDVQRLGEKHGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 591 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + +G++ + + + ++ A I PM + Sbjct: 592 NGTVPQALRRLGYQEEQIEAIVAHIADNGNVIDAPGLKAEHYEVFDCAMGERAISPMGHV 651 Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + + ++++ IY +AW +G+K R S Sbjct: 652 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQPLSAK 711 Query: 917 KGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDT 948 +T+ T + Sbjct: 712 TKDTKAAEKDAITEKAEETIRTAVEKVVEYRP 743 >gi|83319418|ref|YP_424095.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283304|gb|ABC01236.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 720 Score = 290 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 169/736 (22%), Positives = 294/736 (39%), Gaps = 79/736 (10%) Query: 199 ETALIFSSRTLI-EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 + + ++R+ I K+ + +L + K + + L E Sbjct: 15 DEYIKLNARSKIFSKDQD---------NFQLDIKAAELYLKNYIEPRMKKFSSL-KERLD 64 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 +E + + L + ++G ++ Y L + + + Sbjct: 65 YLLENQYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTMYLE 124 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376 RV M +A + F +TPT N+ +H + SC+L Sbjct: 125 TYT-DRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYLLRT 183 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D++ I + + L+K GG+ T +R G+ I +G S G IP +K+ D+ Sbjct: 184 EDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILEDSFT 243 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +Q G+R+GA Y+ H D+ LD ++ D++ R ++ IPD+ + N Sbjct: 244 YADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELARDN 303 Query: 497 AGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 LFSP +V ++ E YE E IK ISA + + + Sbjct: 304 KDMALFSPYDVQKVYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVAELH 358 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I F+D N R+ G + SNLC+EI S++ E CN Sbjct: 359 FESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDICCN 418 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ + + + +I A+ LD V + + KK N + A+GLG Sbjct: 419 LGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSASPSIKKGNAENHAVGLGA 474 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG- 719 M L I Y SPEAV+ + ++++A AS +LAQE ++SF S + G Sbjct: 475 MNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFADGS 534 Query: 720 ------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 D + E+ + + S+ W EL + +K G+ NS+ MA+APT Sbjct: 535 WFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIELVEEIKKTGLANSHLMAVAPT 594 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDG 829 +I+ + + S+ P + V+ V ++ +N Y G Sbjct: 595 GSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------YAMG 643 Query: 830 SIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFI 888 A+E+ P +I + Q+ +DQA SL L++ + + + L+ Sbjct: 644 ------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRA 685 Query: 889 YRQAWLMGLKTTYYLR 904 Y A+ G + YY+R Sbjct: 686 YVNAFKQGCSSIYYVR 701 >gi|307822851|ref|ZP_07653082.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylobacter tundripaludum SV96] gi|307736455|gb|EFO07301.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Methylobacter tundripaludum SV96] Length = 716 Score = 290 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 128/653 (19%), Positives = 248/653 (37%), Gaps = 57/653 (8%) Query: 293 FEYLGLQILYDRYFLHINGSRIE--MPQAFFMRVAMGLALKETEKEKRAVEFYNLLS--S 348 F+ + I +Y L + RVA ++ E K K+ + + L Sbjct: 17 FQDASMDIWDTKYRLKTKDGIAIDGTIDETYQRVAKAISAVEKGKTKQEQCYKDFLWALR 76 Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + N+G + +C ++ T+ D + I G + E + K G+G + Sbjct: 77 QGAIPAGRITSNAGALEHKPATSTINCTVSGTIADSMDDILGKVHEAGLTLKAGCGIGYE 136 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R A++ G + G + F+ + + V+ G R+GA A + H DV EF+ Sbjct: 137 FSTLRPKNAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMATFDVGHPDVVEFI 196 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 ++ + R N + I F++ V + W+L P ++ + Sbjct: 197 RAKR----EDGRLRQFNLSLLITSEFVEAVKNDKPWSLSFPVTEKEVKLDNLDLTDDKLI 252 Query: 524 NYERQADRGE----------IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + K+ + + A LW +++ ++ P D N + Sbjct: 253 IWRDLPYIDGYILNDDGMVACKISKTMPARRLWDIIMSSTYDYAEPGFILIDKVNEMNNN 312 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-----QFDYDKLASTIRTA 628 + ++N C E L C LGSINL FD+D I+ Sbjct: 313 WFCEKIRATNPCGEQPLPPY----GSCLLGSINLTRFVKKPFTNDAHFDWDNYRKAIKIF 368 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R+LDNV++IN + + ++ T R G+G +G S + ++ + Y +++E +E + Sbjct: 369 TRMLDNVVEINGLPLAQQREEILTKRRHGMGYLGLGSTVTMMGMKYGDAQSLEFTEEVTK 428 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPI-------DSIGLLAEVRDELAMNRT 741 ++ A + LA+E+G + G D + V +L + Sbjct: 429 VLAVEGWKAGLALAKEKGPAPIMEQMFSVTGEMLHKRPEMIADGYKVGDRVPGKLLHTKY 488 Query: 742 SRLPW------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793 SR EL + G R ++ +IAPT TI+ S I+PS+ + Y ++ Sbjct: 489 SRYMQQVAQEEPELVAELIETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 548 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD-DLKKIHATAFEID 852 + ++ D++ +++ + + P+ L A ++ Sbjct: 549 VI--------RAGKKSKEKIDVFSFELLAYREMVNADAMPYSDDPEQKLPDYFIAADDVT 600 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 P ++ + QKWID + S + + + IY A+ GLK R Sbjct: 601 PKQHVDIQAAAQKWIDSSISKTANVPTDYPYEDFKSIYEYAYDKGLKGCTTFR 653 >gi|322374375|ref|ZP_08048889.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C300] gi|321279875|gb|EFX56914.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus sp. C300] Length = 719 Score = 290 bits (743), Expect = 6e-76, Method: Composition-based stats. Identities = 157/712 (22%), Positives = 281/712 (39%), Gaps = 78/712 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + L L +K + Sbjct: 32 KEALDAFFKENVVPNTMVFDSITDK-INYLIEHNYIETAFIKKYRPEFLEELHQFIKDQN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y++Y L N + ++ RV E A + N + Sbjct: 91 FQFKSFMAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQ 149 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R Sbjct: 150 RYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSNLR 209 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 210 EAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKE 269 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD F + +N LFSP V + + + E Y+ Sbjct: 270 NADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDEL 328 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 I+ + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 329 VANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEI 385 Query: 589 TLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID- 637 E ++ N S NL + N +IR VR L V D Sbjct: 386 LQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDS 442 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + N GLG MG S L I Y S E++E +++ + Sbjct: 443 SHIVAVPTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSHESIEFTSIYFMLMNYWTLVE 502 Query: 698 SVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+ERG + +F+ S + G + + + E+ ++ + + W E Sbjct: 503 SNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAA--DWAE 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L+++V+ G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 561 LREKVQADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGLSLTLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|301321220|gb|ADK69863.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 720 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 166/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%) Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + + ++R+ I + A L+ + + +K + + + Y Sbjct: 15 DEYIKLNARSKIFLKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 65 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 +E + + L + ++G ++ Y L + + Sbjct: 66 ----LLENQYYDSEILNKYSFDQISQLNHYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 121 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 + RV M +A + + F +TPT N+ +H + SC+L Sbjct: 122 YLETYT-DRVLMNALFLGNGNFNKAKDLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 180 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D++ I + + L+K GG+ T +R G+ I +G S G IP +K+ D Sbjct: 181 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 240 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +Q G+R+GA Y+ H D+ LD ++ D++ R ++ IPD+ + Sbjct: 241 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 300 Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP +V + E YE E IK ISA + + Sbjct: 301 RDNKDMALFSPYDVQKTYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 355 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598 + FE+G+P+I F+D N R+ G + SNLC+EI S++ E Sbjct: 356 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYNSDLSFIKTGEDI 415 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + + + +I A+ LD V + + +K N + A+G Sbjct: 416 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSASPSIQKGNALNHAVG 471 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L + I Y SPEAV+ + ++++A AS +LAQE ++SF S + Sbjct: 472 LGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFA 531 Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G D + E+ + + S+ W +L + +K G+ NS+ MA+ Sbjct: 532 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAV 591 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + V+ V ++ +N Y Sbjct: 592 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 640 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 G A+E+ P +I + Q+ +DQA SL L++ + + + L Sbjct: 641 AMG------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 682 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + Y A+ G + YY+R Sbjct: 683 NKAYVNAFKQGCSSIYYVR 701 >gi|312865007|ref|ZP_07725235.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] gi|311099118|gb|EFQ57334.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] Length = 725 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 159/736 (21%), Positives = 285/736 (38%), Gaps = 96/736 (13%) Query: 219 VTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF-- 276 V + L +E L + K + + IE + + + Sbjct: 19 VAGKIPLHY-DQEALEDYLQHEIKPKTKSFES-FSNQIDYLIEHDYIDQDVLSAYSKEGN 76 Query: 277 --DLVYLANDLKYERDFAF---EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLA 329 D ++ + + F ++ Y++Y + + +E + RV Sbjct: 77 GIDKAFIQELFEEAYQYGFKFKSFMAAYKFYNQYAMKTDDLQQYLENFED---RVVFNAL 133 Query: 330 LKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQ 388 + A + L S + +TPT N+G + ++ SCFL + D + I + Sbjct: 134 YLAAGNRELARHLVDELISQRYQPATPTFLNAGKKRRGEMVSCFLIDINDSMLSIGRGIN 193 Query: 389 ENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAV 448 L++ GG+G + + +R G+ I GV+P +K+ D+ NQ G+R GA Sbjct: 194 SALQLSRIGGGVGVNLSNLRASGSPIKRIAHAFSGVLPVMKLLEDSFSYSNQLGQRNGAG 253 Query: 449 CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVS 508 YL +H D+ FL +K D++ R ++ +PD + + + N LF+P Sbjct: 254 VVYLNVFHQDILAFLSTKKENTDEKIRVKTLSLGLVVPDKYYELLKTNQPMYLFNP---Y 310 Query: 509 DLHDLYGKEFEIAYENYE-RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 + YG+ F E + I+A L +++ + E+G+P+I D Sbjct: 311 HVERAYGRPFSYVDITAEYDKLVANPAIEKMVINARELEQEISRLQQESGYPYILNIDSA 370 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQ 615 N +P G + SNLC+EI CNLGS+N++ + Sbjct: 371 NRSNPV--KGRIIMSNLCSEILQPQEPSTLNRDLTYQEVGTDISCNLGSMNMVNLLRSP- 427 Query: 616 FDYDKLASTIRTAVRVLDNVIDIN-CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 +I AVR L V D + K N + IGLG MG +AL L + Y Sbjct: 428 ----DFGKSIEYAVRALTTVTDSESIEEVPTVAKGNALYHTIGLGAMGLHTALALNGLNY 483 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVR 733 S EA+E D ++++++ AS ++A E+ + F+ S + G + D Sbjct: 484 DSKEALEFVDAFFLAMNYYSLKASHQIALEKKQVFHDFEASKYADGSY-FDQYLQDDFHF 542 Query: 734 DELAMNRT-------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSY 786 D + ++ S W LK+ V G+ + N +A+AP +I+ I S S+ P Sbjct: 543 DFPQVAKSFETIHLPSLEDWQALKEAVMADGLYHRNRLAVAPNGSISYINETSASLHPIT 602 Query: 787 QNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH 845 Q + + G +L N+ + Sbjct: 603 QLIENRQEKKVGSIFYPAPYLSNDTISH-------------------------------Y 631 Query: 846 ATAFEIDPMWLIESASRRQKWIDQAQSLNLYL----------------DEPSGKKLDFIY 889 TA+++D +I+ ++ QK +DQ SL L++ + + L+ + Sbjct: 632 KTAYDMDQRKIIDIYAQAQKHVDQGLSLTLFMRSKLPQGLYEWKKPDHPNLTTRDLNKLR 691 Query: 890 RQAWLMGLKTTYYLRS 905 AW G+K+ YY+R+ Sbjct: 692 NYAWTKGIKSLYYVRT 707 >gi|90416806|ref|ZP_01224736.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium HTCC2207] gi|90331559|gb|EAS46795.1| hypothetical protein GB2207_04124 [marine gamma proteobacterium HTCC2207] Length = 720 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 131/622 (21%), Positives = 245/622 (39%), Gaps = 56/622 (9%) Query: 321 FMRVAMGLA--LKETEKEKRAVEFYNLLSSFHFMCS---TPTLFNSGTRHPQLSSCFLTT 375 + RVA L+ E+ +E+ F L + + +C ++ Sbjct: 54 YARVAKALSDVEDESLREEWQTRFVWALKHGAIPAGRIISNAGAQAYKPATSTINCTVSG 113 Query: 376 -VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 VPD + GI E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 114 IVPDSMVGILERNLEAGLTLKAGCGIGYEFSTLRPKGAYVSGAGAYTSGPLSFMDIYDKM 173 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV +F+ ++ + R N + I + F++ V Sbjct: 174 CFTVSSAGGRRGAQMATFDVSHPDVFDFVRAKR----EDGRLRQFNLSLLITEEFIEAVR 229 Query: 495 QNAGWTLFSPDEVSDLH--------DLYGKEFEIAYENYERQADRGEIKVFRKISAVALW 546 + W L P ++ ++ K F Y +++ I A LW Sbjct: 230 NDGSWDLTFPISAKEIDAGLDLKGDNIVWKPFPTTENYYCNDDGLVACRIYETIRAQKLW 289 Query: 547 RKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSIN 606 +++ ++ P D N + + ++N C E L C LGS+N Sbjct: 290 NAIMSSTYDYAEPGFILIDQVNKNNNNWFCEDIRATNPCGEQPLPPY----GSCLLGSVN 345 Query: 607 LLAHFANN-----QFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLM 661 L N FD+++ A + R+LDNV++IN ++ +K R G+G + Sbjct: 346 LTKFVRNPFTKDAYFDWEEYAEVVAVFTRMLDNVVEINGLPLDNQRKEIEYKRRHGMGFL 405 Query: 662 GFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGS------- 714 G S + +L + Y ++E D ++ + A +ELA+E+G + Sbjct: 406 GLGSTITMLQMKYGDEGSLEFTDRIARDMAVAGLKAGLELAREKGPAPIMEDDFEVTAAL 465 Query: 715 LWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAP 768 L+ + D I ++ ++ + + S+ EL + + G R S+ +IAP Sbjct: 466 LFKRPELAKDGIKAGDSLKGKVLLGKYSKYMQTIATVAPELIESIIEEGCRFSHHSSIAP 525 Query: 769 TATIANIC--GVSQSIDPSYQNLYVKSNM---SGDFTVVNSFLVNELKQRDLWDEAMISD 823 T TI+ VS I+PS+ + Y ++ + V+ F L R L ++ + Sbjct: 526 TGTISLSLANNVSNGIEPSFAHHYARNVIREGKKSKEKVDVFSYELLAYRTLINDKAMPY 585 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 D + L ++ I P ++ + QKW+D + S + + + Sbjct: 586 ATNED----------EALPDYFMSSENIMPRAHVDIQAAAQKWVDSSISKTINVPTDCDY 635 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + IY A GLK R Sbjct: 636 EDFKDIYLYAAEKGLKGCTTFR 657 >gi|19746347|ref|NP_607483.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS8232] gi|19748542|gb|AAL97982.1| putative ribonucleotide reductase alpha-chain [Streptococcus pyogenes MGAS8232] Length = 719 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 161/717 (22%), Positives = 285/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + +++ +H+ +F + LA+ +K E Sbjct: 32 KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIHKYHPEF-ITELASVIKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV +E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + I A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382 Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQTPSLVNDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + L+ ++ + + + S Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQAS- 556 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 -DWKALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + D + +A+++D +I+ + Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|226942250|ref|YP_002797323.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent [Azotobacter vinelandii DJ] gi|226717177|gb|ACO76348.1| ribonucleotide-diphosphate reductase, adenosylcobalamin-dependent [Azotobacter vinelandii DJ] Length = 713 Score = 290 bits (742), Expect = 7e-76, Method: Composition-based stats. Identities = 137/619 (22%), Positives = 248/619 (40%), Gaps = 54/619 (8%) Query: 323 RVAMGLAL--KETEKEKRAVEFYNLLSSFHFMCSTPTLFNS----GTRHPQLSSCFLT-T 375 R+A LA +E +E +F L + + + N+ +C ++ T Sbjct: 49 RIARALAEIEREDVREHWYRQFLWALRNGAI-PAGRIVANAGAQVWRPATSTINCTVSGT 107 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D + I +QE + K G+G +++ +R GA + G ++ G + F+ + + Sbjct: 108 LYDAMDDILAKVQEAGLTLKAGCGIGYEFSTLRPHGAFVSGAGARTSGPLSFMDIFDRMC 167 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 V+ G R+GA A + H DV EF+ ++ + R N + I D FM+ V Sbjct: 168 FTVSSAGGRRGAQMATFDVAHPDVREFIRAKR----EDGRLRQFNLSLLITDEFMQAVEN 223 Query: 496 NAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWR 547 +A W L P D + + +++ + R + +++ K+ A LW Sbjct: 224 DAEWPLVFPVHPKEAAELDLGDPNQVLWRDWPLHEGYPVRDDGKVACRIYGKVRARHLWD 283 Query: 548 KMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL 607 ++ ++ P D N + + ++N C E L C LGS+NL Sbjct: 284 MLMVSTYDFAEPGFILIDRVNQLNNNWWCEEIRATNPCGEQPLPPY----GSCLLGSVNL 339 Query: 608 LAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 A FD+++ +R R+LDNV++IN ++ ++ R G+G +G Sbjct: 340 TAFVEEPFTARARFDWERFRQVVRIFTRLLDNVVEINNLPLQAQRREILDKRRHGMGFLG 399 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKGSL 715 SAL LL + Y SPEA +E ++ ++ELA+E+G + L Sbjct: 400 LGSALTLLRLRYGSPEACVFTEEVAREMALVGWEVALELAKEKGPAPLLAQEFEVTAKML 459 Query: 716 WDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIAPT 769 + D + V + R SR EL + G R ++ +IAPT Sbjct: 460 RQRPEMATDGYRVGDRVAGRVLHARYSRYMQRLAEFAPELIAALAEQGARFTHHTSIAPT 519 Query: 770 ATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH 827 TI+ S I+PS+ + Y ++ + ++ +++ +++ Sbjct: 520 GTISLSLANNASNGIEPSFAHQYSRNLI--------RPGRKAKEKVEVFSYELLAYRALV 571 Query: 828 DGSIGNIERIPDD-LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKL 885 D P L +A +I P ++ + QKW+D + S + + + Sbjct: 572 DPQAQPGGDEPAHRLPDYFVSADDIGPTQHVDIQAAAQKWVDSSLSKTANVPTDYPFEAF 631 Query: 886 DFIYRQAWLMGLKTTYYLR 904 IYR AW GLK R Sbjct: 632 KDIYRYAWRQGLKGCTTFR 650 >gi|313890803|ref|ZP_07824428.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120904|gb|EFR44018.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 719 Score = 290 bits (742), Expect = 8e-76, Method: Composition-based stats. Identities = 164/718 (22%), Positives = 280/718 (38%), Gaps = 90/718 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ + + + +E + L LA LK E Sbjct: 32 KEALKAFFEENVLPNTKQFPSITDK-IKFLMENDYIETAFIQKYRPEFLEELATILKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + M A+ A E+ A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYYA---DGNEELAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNIFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYEN 524 K D++ R ++ +PD F + N LFSP D+ YG F E Sbjct: 268 KENADEKVRVKTLSLGLTVPDKFYELARNNDDMYLFSP---YDIEREYGIAFNYIDITEK 324 Query: 525 YERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNL 584 Y+ I + + A L ++ + E+G+P+I D N +P G + SNL Sbjct: 325 YDELVANPNITKTK-LRARDLETEISKLQQESGYPYIINIDTANKTNPI--DGKIIMSNL 381 Query: 585 CTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVL 632 C+EI CNLGS N+L + +I+ R L Sbjct: 382 CSEILQVQKPSVINDAQEFLELGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRAL 436 Query: 633 DNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFIS 691 V D + + K N GLG MG S L HI Y SPE++E D ++ Sbjct: 437 TYVTDSSHIEAVPTIKNGNQQAHTFGLGAMGLHSFLAQNHIEYGSPESIEFTDIYFMLMN 496 Query: 692 FHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTS 742 + + S +A+E + F+ S + G + + L+ E+ + + S Sbjct: 497 YWTLVESNNIARERHTTFVGFEKSQYADGTYFDKYVTGQFIPKSDLVKELFKNHFIPQAS 556 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTV 801 W L++ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 --DWQALRQAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYY 614 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 + D + +A+++D +I+ + Sbjct: 615 P-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYA 643 Query: 862 RRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 644 AATQHVDQGLSLTLFLRSELPKEIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|94990702|ref|YP_598802.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10270] gi|94544210|gb|ABF34258.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10270] Length = 719 Score = 290 bits (742), Expect = 8e-76, Method: Composition-based stats. Identities = 159/717 (22%), Positives = 284/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + +++ + + +F + L + +K E Sbjct: 32 KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELDSIIKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV +E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + I A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLC 382 Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + L+ ++ + + + S Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQAS- 556 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + D + +A+++D +I+ + Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|76788702|ref|YP_329138.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae A909] gi|77406063|ref|ZP_00783139.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] gi|76563759|gb|ABA46343.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus agalactiae A909] gi|77175343|gb|EAO78136.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] Length = 722 Score = 290 bits (742), Expect = 8e-76, Method: Composition-based stats. Identities = 169/724 (23%), Positives = 301/724 (41%), Gaps = 79/724 (10%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E + L + + + ++ ++G Y+ Y L +R Sbjct: 52 EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFTFLNFMGALKFYNAYALKTEDNR 111 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + + + RV M EK A + + + + F +TPT N+G + + SC+ Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ + L+K GG+ T +R GA I G ++ G++P +K+ Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D+ NQ G+R+GA YL H +V FLD ++ D++ R ++ IPD+ + Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 N LFSP D+ +YGK E + + + ISA L++ + Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599 + FE+G+P+I F+D N ++P + G + SNLC+EI + Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTASQFSEDLTFTKVGHDVC 407 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSIN+ D++KL + A+ + D++ + KK N + A+GLG Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKGNAANHAVGLG 464 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 M L HI Y S EA++ D ++++A AS LA+E+G + F S + G Sbjct: 465 AMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + E + E + S+ W +L + +K IG+ N++ +A+APT + Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ + + S+ P + V+ + V ++ Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618 Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 +I D + A+E+ P +I A+ QK +DQA SL L++ + + + L+ Y Sbjct: 619 ----KIDADNYVYYKKGAYEVGPEAIINIAAAAQKHVDQAISLTLFMTDQATTRDLNKAY 674 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 QA+ + YY+R R + S + + + + Sbjct: 675 IQAFKQKCASIYYVRVR------------------QDILEGSESYDDDMLDDFTSSDLED 716 Query: 950 CEVC 953 C+ C Sbjct: 717 CQSC 720 >gi|313111562|ref|ZP_07797361.1| NrdJa [Pseudomonas aeruginosa 39016] gi|310883863|gb|EFQ42457.1| NrdJa [Pseudomonas aeruginosa 39016] Length = 734 Score = 290 bits (742), Expect = 8e-76, Method: Composition-based stats. Identities = 140/621 (22%), Positives = 252/621 (40%), Gaps = 54/621 (8%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + +E F L + + + N+G + +C ++ Sbjct: 68 WQRVARALADVEDKASREHWYGRFLWALRNGAI-PAGRIISNAGALGHKPATSTINCTVS 126 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I + E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 127 GTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDK 186 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA + H DV EF+ ++ + R N + I D FM+ V Sbjct: 187 MCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKR----EDGRLRQFNLSLLITDQFMQAV 242 Query: 494 TQNAGWTLFSPDEVS--------DLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVAL 545 Q+A W L P V D + + +E+ I + +R KV+ ++ A L Sbjct: 243 EQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHL 302 Query: 546 WRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSI 605 W ++ ++ P D N + + ++N C E L C LGS+ Sbjct: 303 WDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPY----GSCLLGSV 358 Query: 606 NLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660 NL FD+D+ +R R+LDNV++IN +E+ ++ R G+G Sbjct: 359 NLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGF 418 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-------YSSFKG 713 +G S L LL + Y SPEA +E ++ ++ELA+E+G Y Sbjct: 419 LGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAE 478 Query: 714 SLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAIA 767 L + D +R + + SR EL + + G R ++ +IA Sbjct: 479 MLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIA 538 Query: 768 PTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI-SDL 824 PT TI+ S I+PS+ + Y ++ + ++ +++ ++ + Sbjct: 539 PTGTISLSLANNASNGIEPSFAHHYSRNLI--------REGRKTKEKVEVYSYELLAYRI 590 Query: 825 KYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGK 883 + ++ + + L TA + P ++ + QKW D + S + + + Sbjct: 591 LVNAQALPDSDDPARRLPDYFITADSVTPAQHVDIQAAAQKWGDSSISKTANVPTDYPFE 650 Query: 884 KLDFIYRQAWLMGLKTTYYLR 904 IYR AW GLK R Sbjct: 651 DFKDIYRYAWHQGLKGCTTFR 671 >gi|194398211|ref|YP_002037787.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pneumoniae G54] gi|194357878|gb|ACF56326.1| ribonucleoside-diphosphate reductase, alpha subunitv [Streptococcus pneumoniae G54] Length = 719 Score = 290 bits (742), Expect = 8e-76, Method: Composition-based stats. Identities = 158/715 (22%), Positives = 279/715 (39%), Gaps = 78/715 (10%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M + IE + L LA +K Sbjct: 28 LHKDKEALDAFFKENVVPNTMVFDSIKDKINYLIEHNYIETAFIKKYRPEFLEELAQFIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 + ++ Y++Y L N + + RV E A++ N + Sbjct: 88 DQNFQFKSFMAAYKFYNQYALKTNDGEYYL-ENMEDRVFFNALYFADGNEAVAIDIANEI 146 Query: 347 SSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + +TP+ N+G +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IHQRYQPATPSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 207 NLREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVEKEYGV-PFNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I+ + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPNIRKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLC 382 Query: 586 TEITLNSSSEETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 +EI E ++ N S NL + N +IR VR L V Sbjct: 383 SEILQVQ---EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFV 439 Query: 636 ID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N GLG MG S L I Y SPE+VE +++ Sbjct: 440 TDSSHIVAVPTIDHGNSQAHTFGLGAMGLHSYLAQQLIEYGSPESVEFTSIYFMLMNYWT 499 Query: 695 ISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 + S +A+ERG + +F+ S + G + + + E+ + + + Sbjct: 500 LVESNNIARERGITFHNFEKSDYANGSYFDKYVTGEFVPTSDRVKELFKNVFIPGVA--D 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W EL+ +V+ G+ + N +A+AP +I I VS SI P Q + + G Sbjct: 558 WAELRDKVQEDGLYHQNRLAVAPNGSIXYINDVSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + + + +A+++D +I+ + Sbjct: 616 -----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFMRSDIPKGLYEWKRENKQTTRDLSILRNYAFNKGIKSIYYVRT 701 >gi|7330058|gb|AAF60047.1|AF210726_68 large ribonuclease reductase [Rhesus monkey rhadinovirus H26-95] Length = 788 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 166/753 (22%), Positives = 290/753 (38%), Gaps = 90/753 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDF----AFEYLGLQILYDRYFLH 308 +Y + E S + L L D K + + YL YD Y L Sbjct: 75 RDYLAVFGERLSDEVRAFMSKHEAALDGLLQDFKQSKAYTNLVNCGYLSAVRFYDTYVLR 134 Query: 309 INGS--RIEMPQAFFMRVAMGL--------ALKETEKEKRAVEF-----------YNLLS 347 GS E FMRVA+ + L+ET + E ++ +S Sbjct: 135 TQGSSPIFESVAQMFMRVAVFVACQCIKFPCLRETLRHLVESETELDEMYLVGYAFHYIS 194 Query: 348 SFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYG--IFGALQENAMLAKYSGGLGNDWT 405 S C+TP L ++G R QLSSCF+ + +E + L G+G D + Sbjct: 195 SQIVCCATPVLRSAGLRGGQLSSCFILKPSMATEDKTLKALHEEMSPLLASKSGVGIDVS 254 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 + + + LK+ N N R AY+E WH + +FL+ Sbjct: 255 SFA-----------EHKNITSCLKLINAHVGYFNDNNIRPVGASAYMELWHHQICDFLNA 303 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG--WTLFSPDEVSDLHDLYGKEFEIAYE 523 + + R H++ +P+LF + N W LF+P+ +L LYG EFEI Y Sbjct: 304 KMPENQE--RCHNLFQGVCVPELFFRLYETNPDGQWHLFAPEVAPNLLKLYGAEFEIEYN 361 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSS 582 K + ++ ++ + +TG P++ K+ N + G ++ S Sbjct: 362 RLVAA-----GKHSSSLPLKSMMYALINTVIKTGSPYVLLKEALNKHHWCETQGSAINCS 416 Query: 583 NLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-------------YDKLASTIRTAV 629 NLC EI + +VCNL I+L ++ + ++ + + AV Sbjct: 417 NLCAEIVQQP-EGQASVCNLAHISLPKCLRPHRGESGVEPGKGDVTFGFELIDDAVEAAV 475 Query: 630 RVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 +++ I E ++ R++G+G+ G L Y ++ ++ E + Sbjct: 476 IIVNACILGGTAPTESVRRG-QEERSMGIGVQGLADVFAELGFGYLDADSAKLDLEIFQA 534 Query: 690 ISFHAISASVE--LAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWD 747 + F A+ + E L E + ++ + QGVF + + L W+ Sbjct: 535 MYFTAVQTTHEIVLLGEGTPFRGWERNQLAQGVFHWQTWDGVKPSHPPLE-------RWE 587 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLV 807 +L + + G+ NS +A+ PTA + + G +++ P + N+ K + N Sbjct: 588 QLGRSIAQHGIFNSQFLALMPTAGTSQLTGYTEAFYPFFANIASKVTSKEEILKPNVTFF 647 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 +K DL ++ + G + + D KI TAF+ P+ +E A R ++ Sbjct: 648 KRVKPGDLRT------VRRYGGDVASFPEPLKDRYKIFLTAFDYCPIKQLERAGARAPFV 701 Query: 868 DQAQSLNLYLDE--PS-GKKLDFIYRQAWLMGLKTT-YYLRSRSATSVEKSTLKGVDGKL 923 DQ+QSLN +L E + + + + +GLKT YY R ++K T L Sbjct: 702 DQSQSLNFFLKEEQATRASYIRDLLLTGYRLGLKTMLYYCR------IQKQTKLNALQCL 755 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTE--CEVCQ 954 + V + +S + C CQ Sbjct: 756 DQVVGDNISSEGAESNCVQKADGERTKVCLACQ 788 >gi|264678224|ref|YP_003278131.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2] gi|262208737|gb|ACY32835.1| ribonucleoside-diphosphate reductase [Comamonas testosteroni CNB-2] Length = 797 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 144/676 (21%), Positives = 250/676 (36%), Gaps = 96/676 (14%) Query: 299 QILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTP 356 +L ++Y +G + E Q F RVA LA E + +F L Sbjct: 12 DVLAEKYLA--DGEQSE--QELFARVARALAAVEKPELQTHWEQQFLANLQRGAIGAGRI 67 Query: 357 TLFNSGTRHPQLSSCFLTTVPDDLYGI--------FGALQENAMLAKYSGGLGNDWTPVR 408 L +CF+ V D G + AL + A + GG+G D++ +R Sbjct: 68 MAAAGLDTKATLINCFVQPVADATNGFDSQGNPGIYTALSQAAETMRRGGGVGYDFSNLR 127 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA + GTN + G F+ V + + V G R+GA L H DV EF+ ++ Sbjct: 128 PRGALVRGTNSFASGPCSFIDVFDASCTTVESAGARRGAQMGVLRIDHPDVLEFITAKRQ 187 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 G R ++ N + + FM+ V +A W L S+ G Sbjct: 188 KG----RWNNFNVSVGVSSAFMQAVRDDAEWELVHVASPSEAQIQAG-----------AH 232 Query: 529 ADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEI 588 + V++ A ALW ++ ++ P I F D N + + + ++N C E Sbjct: 233 RRDDGLWVYKSQPARALWDAIMRSAYDFAEPGILFLDNINADNNLWYAEQISATNPCGEQ 292 Query: 589 TLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 L C+LG + L FD + + + VR+LDNV+D + Sbjct: 293 PLPPY----GCCDLGPVILTRFVRDSFTPQAFFDMEAFRAAVAVQVRMLDNVLDATVWPL 348 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + ++ R IG+G G AL LL + YAS ++ A + A +ASVELA+ Sbjct: 349 PEQQREAQQKRRIGVGFTGLGDALILLGLHYASDAGLQQAASIARAMRDAAYAASVELAR 408 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 E+G + F + + ++ EL+ ++ G+RNS+ Sbjct: 409 EKGVFPLFNAKQY--------------------LKSGFAKRLPKELRATIRKHGLRNSHL 448 Query: 764 MAIAPTATIANIC--GVSQSIDPSYQNLYVKS----NMSGDFTVVNSFLVNELKQRDLWD 817 ++IAPT T++ S I+P++ Y + N F V K Sbjct: 449 LSIAPTGTVSLAFADNASNGIEPAFSWTYTRKKRTANGGEQFYTVQDHAYRLYKAM---- 504 Query: 818 EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL 877 + + P L +A E+ + Q ++D + S + + Sbjct: 505 ---------------HGDEAP--LPDCFVSALELSASEHVAMMRCVQPFVDTSISKTVNI 547 Query: 878 D-EPSGKKLDFIYRQAWLMGLKTTYYLR----------SRSATSVEKSTLKGVDGKLNAV 926 + + +Y + W +GLK R + SA+++ ++ +N+V Sbjct: 548 PADYPFEDFKHLYMECWEVGLKGCATYRPNDTLGAVLSTDSASTLSQAPTDKSQTAINSV 607 Query: 927 PVTDPNSSTHSLGIPS 942 + + Sbjct: 608 SSSGMTAVIERRPEGP 623 >gi|56807675|ref|ZP_00365559.1| COG0209: Ribonucleotide reductase, alpha subunit [Streptococcus pyogenes M49 591] Length = 587 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 161/635 (25%), Positives = 274/635 (43%), Gaps = 77/635 (12%) Query: 344 NLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGN 402 + + F +TPT NSG + + SC+L V D++ I A+ + L+K GG+ Sbjct: 3 DAILHRRFQPATPTFLNSGKKRRGEYISCYLLRVEDNMESISRAISTSLQLSKRGGGVAL 62 Query: 403 DWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEF 462 T +R +GA I G ++ G++P +K+ D+ NQ G+R+GA YL H +V F Sbjct: 63 CLTNLREIGAPIKGIENQATGIVPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPEVLTF 122 Query: 463 LDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAY 522 LD ++ D++ R + IPD+ + +N LFSP D+ YGK+ Sbjct: 123 LDTKRENADEKIRIKSLALGLVIPDITFQLAKENKDMALFSP---YDIKRAYGKDMSDIS 179 Query: 523 ENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E + + ISA L++ + + FE+G+P++ F D N R+P G + Sbjct: 180 ITEEYDKLLANPAIKKTYISARKLFQLIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVM 239 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLC+EI S+ E CNLGSIN+ D I T++ Sbjct: 240 SNLCSEIAQVSTPSTFKEDLSFETIGEDICCNLGSINIAQA----MADAPHFEQLITTSI 295 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R LD V + + + + N + A+GLG M L HI Y + EAV+ D Sbjct: 296 RALDRVSRVSDLNCAPSVETGNAANHAVGLGAMNLHGFLATNHIYYDTKEAVDFTDLFFH 355 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD--------ELAMNR 740 ++++A AS +LA+E+GA++ F S + G + + A+ + + Sbjct: 356 AMAYYAFKASCQLAKEKGAFAGFSLSTYADGTYFAKYLQEDAKPQTAKVATLLQDYGFTL 415 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W L +K G+ N++ +A+APT +I+ + + S+ P + V+ S Sbjct: 416 PTVADWQALVADIKQFGLANAHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGSLGRI 475 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIES 859 V ++ +I + A+E+ P +I+ Sbjct: 476 YVPAY------------------------------QINQANYTYYERGAYEVGPKAIIDV 505 Query: 860 ASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKG 918 + QK +DQA SL L++ + + + L+ Y QA+ + YY+R R V + + Sbjct: 506 VAAAQKHVDQAISLTLFMTDQATTRDLNRSYIQAFKQNCASIYYVRVR--QDVLAGSEQY 563 Query: 919 VDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + L P ++T EC+ C Sbjct: 564 DEDSLVTAPGASDETTT-------------ECQSC 585 >gi|111225058|ref|YP_715852.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni ACN14a] gi|111152590|emb|CAJ64331.1| Ribonucleoside-diphosphate reductase M1 chain (Vitamin B12-dependent ribonucleotide reductase) [Frankia alni ACN14a] Length = 1012 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 117/609 (19%), Positives = 220/609 (36%), Gaps = 28/609 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + + E E +L F ++P FN GT Q+S+CF+ +V D + I Sbjct: 111 GYFATDADAEIFEHELTWMLLHQVFSFNSPVWFNVGTPAPQQVSACFILSVDDTMESILN 170 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKR 444 +E ++ K G G + + +R + G + G + F++ A+ +A + G R Sbjct: 171 WYREEGLIFKGGSGAGLNLSRIRSSKELLSS-GGTASGPVSFMRGADASAGTIKSGGATR 229 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+ EF++ + D R D + + V Sbjct: 230 RAAKMVVLDVDHPDIVEFVETKAREEDKIRALRDAGFDMDLGGRDIASVQYQNANNSVRV 289 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + G F++ R + + I A L+R + + P I + Sbjct: 290 TDEFMRAVVDGSSFDLR--------ARLDGRTIETIDAKGLFRTIAEAAWACADPGIQYD 341 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 N G + +SN C+E + + CNL S+NLL ++ FD + + Sbjct: 342 GTINDWHTCPESGRISASNPCSEYVH----LDNSSCNLASLNLLTFLRPDRTFDAEGFVA 397 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + + +D I + +R +G+G + L Y S +A Sbjct: 398 AVELIITAMDISICFADFPTPEITAVTRAYRQLGIGYANLGALLMASARAYDSDGGRALA 457 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVR----DELAMN 739 ++ A S ELA GAY F + VR ++ + Sbjct: 458 ASITSLMTATAYRRSAELAGIVGAYDGFARNADAHRRVVRKHSAANDAVRSVHTEDTRVL 517 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLYVKSNMSG- 797 + W + G RN+ +APT TI + I+P + +K + G Sbjct: 518 AAASKEWARAQTLGDKHGWRNAQVSLLAPTGTIGLAMDCDTTGIEPDLALVKMKKLVGGA 577 Query: 798 DFTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATA---FEID 852 +VN + L+ +E + + + G + + + + + A I Sbjct: 578 SMRIVNQTVPAALRALGYPEETLEAIVEFIAEHGHVVDAPGLRPEHYDVFDCAIGERAIS 637 Query: 853 PMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSV 911 PM + + Q ++ A S + + + ++++ IY + W +GLK R Sbjct: 638 PMGHVRMMAAVQPFLSGAISKTVNMPSTATVEEVEEIYLEGWRLGLKALAIYRDNCKVGQ 697 Query: 912 EKSTLKGVD 920 S ++G Sbjct: 698 PLSDVRGAK 706 >gi|227504051|ref|ZP_03934100.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199381|gb|EEI79429.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 745 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 151/675 (22%), Positives = 276/675 (40%), Gaps = 79/675 (11%) Query: 266 ARLLHESMMD------FDLVYLANDLK--YERDFAF-EYLGLQILYDRYFLHING--SRI 314 L+ + ++ +L + F +LG + Y L + + Sbjct: 95 EWLVDNEYYERGFLELYEDEFLCAIYDRAHRAQHRFRTFLGAFKFFTSYALKTFDGSTLL 154 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 E + RV + A + + + S F +TPT N+G ++ SCFL Sbjct: 155 EGYEE---RVTTTALYLAQGDKALAEKLVDDIMSGRFQPATPTFLNAGKAQRGEMVSCFL 211 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 + D+L I ++ L+K GG+ + +R GA I ++ GV+P +K+ D Sbjct: 212 LRIEDNLESIGRSVNSALQLSKRGGGVALLLSNLRESGAPIKKIENQASGVVPVMKILED 271 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ + Sbjct: 272 SFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKVRIKTLSLGVVIPDITFRLA 331 Query: 494 TQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTML 553 +N LFSP +++ + + + E+Y+ I I A + + + Sbjct: 332 KENKDMHLFSPYDIAREYGVPMSDMS-ITEHYDELVTNPRISHT-TIKAREFFTTLAELQ 389 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEETAVCN 601 FE+G+P+I F+D N +P G ++ SNLC+EI ++ + CN Sbjct: 390 FESGYPYILFEDTVNRSNPL--KGHINMSNLCSEILQVNAPSTLDPSGNYATIGQDISCN 447 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ F + +T+ TAVR L V ++ + + K N + AIGLG Sbjct: 448 LGSLNIAKAFESP-----DFGATVETAVRALTQVSELTDIEAVPSIAKGNESMHAIGLGQ 502 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQG 719 M L I Y EA++ + +++HA+ S LA E+ + F+ S + G Sbjct: 503 MNLHGFLASKRIHYGCAEALDFTNFYFLTVTYHALRTSHALAVEKGQRFQGFEDSAYASG 562 Query: 720 VFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 F + + ++ E + +R W +LK +V G+ N+ A+ PT + Sbjct: 563 AFFDKYLKQEWVPATKRVEQLFHEAGVRIPTREDWLKLKNQVARDGIYNAYLQAVPPTGS 622 Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ I + SI P + ++ G + ++ + Sbjct: 623 ISYINDSTASIHPIASKIEIRKEGRLGRVYYPAP---------GMTNDNV---------- 663 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIY 889 + +F + +I++ + + +DQ SL L+ + + + ++ Sbjct: 664 ------------EYFEDSFTVGYEKIIDTYAMATQHVDQGLSLTLFFTADSTTRDINRAQ 711 Query: 890 RQAWLMGLKTTYYLR 904 AW G+KT YY+R Sbjct: 712 IYAWKAGIKTLYYIR 726 >gi|81428552|ref|YP_395552.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus sakei subsp. sakei 23K] gi|78610194|emb|CAI55243.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus sakei subsp. sakei 23K] Length = 723 Score = 290 bits (741), Expect = 9e-76, Method: Composition-based stats. Identities = 164/710 (23%), Positives = 284/710 (40%), Gaps = 74/710 (10%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L ++ + + L E +A L +DF + L L ++D Sbjct: 35 EALEAFLEQNVQPNMVTFKSLQDRLNYMVAENYYEADFLKAYSIDF-MERLNQYL-IDQD 92 Query: 291 FAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 F F ++ Y +Y L N + + + F RV E A+ + + Sbjct: 93 FHFKSFMAAYKFYAQYALKTNDNGFYL-EDFKDRVFTNALYFADGDEALAMSVADEMIHQ 151 Query: 350 HFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+ +R +L SCFL DD+ I + L++ GG+G + +R Sbjct: 152 RYQPATPTFLNAGRSRRGELVSCFLLQTTDDMNSIGRTINSALQLSRIGGGVGISLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G G I G +G + GV+P +K+ D+ NQ G+R+GA YL +H DV FL +K Sbjct: 212 GAGDPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDVVAFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQ 528 D++ R ++ +PD + + V ++A LFSP V YG+ F E Sbjct: 272 NADEKYRLKTLSLGLTVPDKYYELVKEDADMYLFSPYSV---EREYGQPFSYIDITAEYD 328 Query: 529 A-DRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E KI A L ++ + E+G+P+I D N +P G + SNLC+E Sbjct: 329 NLVANEAIKKTKIKARDLENEISKLQQESGYPYIVNIDTANKANPI--DGKIIMSNLCSE 386 Query: 588 ITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 + + +E V S NL + N +I T VR L V D + Sbjct: 387 VLQVQTPSQINNRQEYDVLGTDISCNLGSTNIPNMMTSPDFGHSIETMVRSLTYVTDHSD 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + N IGLG MG + + Y S E+++ +++ + AS Sbjct: 447 IDVVPSVAHGNQLAHTIGLGGMGLHTYFAKNQMMYGSEESIDFTSNYFMLLNYWTLVASN 506 Query: 700 ELAQERG-AYSSFKGSLWDQGVFPI-----DSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 ++A+ERG + +F+ S + G + + A+V+ + ++ W LK+ Sbjct: 507 KIAKERGITFDNFENSKYADGSYFDQYLNTEWAPKTAKVKGLFDGVFIPTQADWAALKEA 566 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811 + G+ + N +A+AP +I+ I S S+ P + + G Sbjct: 567 IMQDGLYHQNRLAVAPNGSISYINDTSASLQPIVNRVEDRQEKKIGTIYYPAP------- 619 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 L +E M + +A++ID +I+ + QK +DQ Sbjct: 620 --GLSNETM----------------------PYYESAYDIDMRKVIDIYAAAQKHVDQGM 655 Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 S+ L++ + + L+ + A +K+ YY+R+ Sbjct: 656 SMTLFMRSTIPAGLYDWKDGRTDKMTTRDLNILRNYAHHKSIKSIYYIRT 705 >gi|15675307|ref|NP_269481.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes M1 GAS] gi|71910936|ref|YP_282486.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS5005] gi|13622485|gb|AAK34202.1| putative ribonucleotide reductase alpha-chain [Streptococcus pyogenes M1 GAS] gi|71853718|gb|AAZ51741.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS5005] Length = 719 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 160/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M E I + + L + +K Sbjct: 28 LHKDKEALKAFSAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEFITELDSIIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 E ++ Y +Y L N +E + RV +E A + Sbjct: 88 SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 K+ + I A L ++ + E+G+P+I D N +P G + S Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379 Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI + CNLGS N+L + +I+T R Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N GLG MG S L HI Y SPE++E D Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740 +++ + S +A+ER + F+ S + G + + L+ ++ + + + Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQ 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799 S W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + D + +A+++D +I+ Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|328951135|ref|YP_004368470.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinithermus hydrothermalis DSM 14884] gi|328451459|gb|AEB12360.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinithermus hydrothermalis DSM 14884] Length = 955 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 147/622 (23%), Positives = 241/622 (38%), Gaps = 92/622 (14%) Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVA 431 VPDD+ GI + + AK D++ +R GA I G+ G S G + FL ++ Sbjct: 204 ALEVPDDMGGIIRSAAQAVAQAKEGYEPHVDFSQLRPEGAPIKGSGGTSSGPVSFLLEIF 263 Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467 ++ N QGG R+GA A L H D+ +FL + Sbjct: 264 DNFLEWANLGAEAAGPVATLRYVYAPVLRVVRQGGTRRGAGMATLSIDHPDLLDFLTAKD 323 Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE--- 523 + N + + D F K + +A W + P EV + Y E Y Sbjct: 324 LDREAAEGDISTFNISILVTDTFWKALEADALWPVT-PVEVPGKY--YPYPLEEPYTGTL 380 Query: 524 ----NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG-- 577 + E R K+ A LW ++ + TG P + F D N S + +G Sbjct: 381 PELPDREADGARAIPLYDGKVPAKWLWHEIAWHAWATGEPGLIFIDRVNDLSALKGLGER 440 Query: 578 -VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 + S+N C EI L C+LG++NL A+ FD++ +R AVR LDNV+ Sbjct: 441 YRIRSTNPCGEIPLTVG----EPCDLGAMNLAAYVREGAFDFEAFRRDVRIAVRFLDNVL 496 Query: 637 DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAIS 696 D+N +E + ++ R +GLG+MG AL + +PY S A E E M + AI Sbjct: 497 DVNKFALEDNRAASQKLRRLGLGVMGLADALIKMGLPYDSEAAREQVYEIMSVLREEAIR 556 Query: 697 ASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 AS LA+ERG + L+ + + +G+ Sbjct: 557 ASEALAEERGVFP-----LYAEEQAYFEKLGIRP-------------------------- 585 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNEL------ 810 RN + +APT T + + GVS I+P Y + S +++ + Sbjct: 586 -RRNVALLTVAPTGTTSMLMGVSSGIEPVYSPFVWRRIGSEYKPLLHPLFQELMAQFPPH 644 Query: 811 ----KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 K + +I ++ + GS+ +E IP+ ++++ A ++ P+ + Q+ Sbjct: 645 PEYAKDGGWDWDKLIEAIQENHGSVEGLEMIPEAIRRVFRCAHDVAPLDHVRMQGVVQRA 704 Query: 867 ID------QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGV 919 D + S + L +E S ++ Y +A+ G K R S S K Sbjct: 705 FDAEGYAGNSLSKTINLPNEASVADVEAAYTEAYRTGCKGITVYRDGSREFQVLSVKKEE 764 Query: 920 DGKLNAVPVTDPNSSTHSLGIP 941 P + + P Sbjct: 765 KEAKTPQPASASSEPAAPTSRP 786 Score = 59.9 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 64/177 (36%), Gaps = 37/177 (20%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFH 350 F+ I +Y +G F RVA +AL E E +E+ A FY L+++ Sbjct: 6 FDEHAQAIARRQYMQEGDGDVF----GMFRRVANWVALPEKEAERERWAQRFYELMATKR 61 Query: 351 FMCSTPTLFNSGTRHPQLSSCFLTTVPDDL----YGIFGALQENAMLAKYSGGLGNDWTP 406 F L +GT H + +CF+ GI ++ A++ K GG G + P Sbjct: 62 FCPGGRVLAGAGTAHGNVLNCFVQGATQHPPASFEGIMEVAEKLALVTKVGGGNGVNLDP 121 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 A + G +G YL H DVE+F+ Sbjct: 122 YVSR-------------------------GATKRTGTVRGWA--YLRADHPDVEDFI 151 >gi|241895722|ref|ZP_04783018.1| ribonucleotide reductase, alpha subunit [Weissella paramesenteroides ATCC 33313] gi|241871089|gb|EER74840.1| ribonucleotide reductase, alpha subunit [Weissella paramesenteroides ATCC 33313] Length = 736 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 159/717 (22%), Positives = 287/717 (40%), Gaps = 78/717 (10%) Query: 227 KLRR--EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L++ E L ++ K + + F I + + + L Sbjct: 42 QLQKDTEALQAFIQENVKPNTKQFNSVQDR-FDYLIANDYVDQKMVNKYTMTFIEKLYAY 100 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 L+ + ++ Y +Y L N IE R+ M + E A+ Sbjct: 101 LESQNFQFKSFMAAYKFYAQYALKTNDGDYYIENYND---RIVMNVLFYANGDETLAMNL 157 Query: 343 YNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 + + + +TP+ N+ +R +L SCF+ V DD+ I + L+K GG+G Sbjct: 158 ADEMIHQRYQPATPSFLNAGRSRRGELVSCFILQVTDDMNAIGRVINSALQLSKIGGGVG 217 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + +R GA I G + GV+P +K+ D+ NQ G+R GA YL +H D+ Sbjct: 218 IVLSNLREAGAPIKGIANAASGVVPVMKLLEDSFSYSNQMGQRNGAGVVYLSVFHPDIMS 277 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FL +K D++ R ++ +PD F + + N+ LFSP D+ +YGK F Sbjct: 278 FLATKKENADEKIRVKTLSLGLTVPDKFYELLKNNSDMFLFSP---YDVERVYGKPFNYV 334 Query: 522 YENYERQAD-RGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 E A + +KI A L ++ + E+G+P+I D N +P G + Sbjct: 335 DITAEYDAMVANKQIRKKKIRARELETEISKLQQESGYPYIINIDTVNAANPI--AGKII 392 Query: 581 SSNLCTEI-------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 SSNLC+EI +N+ + S NL + N ++ VR L Sbjct: 393 SSNLCSEILQVQRASQINNEQTYDELGTDVSCNLGSTNIVNMMATKNFGKSVDAMVRALT 452 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + + N AIGLG MG + H+ Y EA++ + +++ Sbjct: 453 FVSDQTDLDIVPSVRLGNRQTHAIGLGAMGLHAFFAKNHMYYGDEEALDFTNAYFLMLNY 512 Query: 693 HAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRTSRLP 745 +++ AS +A+ER + + F+ S + G + I + + + ++ Sbjct: 513 YSLVASNNIAKERQSSFYEFEKSTYASGAYFDKYINEDWSPKTDKVKEIFSVHHFPTKED 572 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W L + VK G+ N+ MAIAPT +I+ + + S+ P + + G Sbjct: 573 WVALAESVKQYGLYNAYRMAIAPTGSISYVNDATASLHPIINRVEERQEKKIGKIYYPAP 632 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 +L + +P + +A+ +D +I+ + Q Sbjct: 633 YL--------------------------GTDTLP-----YYESAYNMDMRRVIDVYAAAQ 661 Query: 865 KWIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + IDQ +L L++ + + L+ + A+ G+K+ YY+R+ Sbjct: 662 QHIDQGMALTLFMRSTIPAGLYDWKDGHTEKMTTRDLNILRLYAYQKGIKSIYYIRT 718 >gi|94994622|ref|YP_602720.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10750] gi|94548130|gb|ABF38176.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10750] Length = 719 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 161/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M E I + + LA+ +K Sbjct: 28 LHKDKEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEFITELASIIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 E ++ Y +Y L N +E + RV +E A + Sbjct: 88 SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 K+ + I A L ++ + E+G+P+I D N +P G + S Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKTNPI--DGKIIMS 379 Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI + CNLGS N+L + +I+T R Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N GLG MG S L HI Y SPE++E D Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740 +++ + S +A+ER + F+ S + G + + L+ + + + + Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQ 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799 S W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + D + +A+++D +I+ Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|313892094|ref|ZP_07825690.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister microaerophilus UPII 345-E] gi|313119486|gb|EFR42682.1| ribonucleoside-diphosphate reductase, alpha subunit [Dialister microaerophilus UPII 345-E] Length = 730 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 173/750 (23%), Positives = 306/750 (40%), Gaps = 78/750 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + K + + + L E ++ + + + + E Sbjct: 31 KEAVQEYIKTQIEPSMMKFSTL-EEKLKYLVDNNYYDEEILNRYSKTFIREI-YAIGKEY 88 Query: 290 DFAFEY-LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F +G Y Y L + + + + F R M E A + S Sbjct: 89 DFKFRNLMGAMKFYTSYGLRTDDKKYYL-ETFTERAIMNALFLANGSEDLAKNLVGDILS 147 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 F +TPT N+G + + SC+L + D++ I + + L+K GG+ T + Sbjct: 148 NRFQPATPTFLNAGKKRRGEYISCYLLRLEDNMESIARGVATSLQLSKRGGGVALCLTNL 207 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R A I G +S GV+P +K+ DT NQ G+R+GA YL H ++ +FLD ++ Sbjct: 208 REGQAPIKGIKNQSSGVVPVMKLLEDTFSYANQLGQRQGAGAVYLSAHHPEILKFLDTKR 267 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD+ + + LFSP D++ +YGK E Sbjct: 268 ENADEKIRIKSLSLGVVIPDITFQLAQKGEDMALFSP---YDIYKVYGKPMTDISITKEY 324 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC- 585 + KV + I+A ++ + + FE+G+P+I ++D N R+P + G + SNLC Sbjct: 325 ENLLRNDKVRKTYINARKFFQTLAEIQFESGYPYILYEDTVNERNPHKKAGRIVMSNLCS 384 Query: 586 -----------TEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 TE + CNLGSIN+ D I AV LD Sbjct: 385 EIAQVSTASTYTEDMSYYHVGQDICCNLGSINIAEAMK----DGKNFGEMIGRAVEALDR 440 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V + + K+ N + AIGLG M L HI Y +PEAV+ D +++ Sbjct: 441 VSRASDLNCAPSIKRGNEENHAIGLGAMNLHGFLSTHHIYYDTPEAVDFTDMFFYATAYY 500 Query: 694 AISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL--------AEVRDELAMNRTSRLP 745 A AS +A ++GA++ F S + G + L E+ ++ ++ Sbjct: 501 AFKASHYMAMKKGAFTGFADSEYADGSYFKKYTEELNAPKTERVKELFEKYNFYIPTQED 560 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L + +K G+ N++ +A+APT +I+ + + S+ P + V+ V ++ Sbjct: 561 WKVLVEDIKKNGLANAHLLAVAPTGSISYLSSCTPSLQPVVSPVEVRKEGKLGRVYVPAY 620 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQ 864 I D+ K + A+E+ P +I+ A+ Q Sbjct: 621 ------------------------------EIDDENYKYYEKGAYEVGPDAIIDVAAAAQ 650 Query: 865 KWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKL 923 K +DQA ++ L++ + + L+ Y +A+ + YY+R + + L+G + Sbjct: 651 KHVDQAIAMTLFVTSQATTRDLNRAYIRAFKKKCSSIYYVR------IRQDVLEGSE--- 701 Query: 924 NAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 + + + +C EC+ C Sbjct: 702 ---KFEEDSIIKNENKEVRNCDGSEECQTC 728 >gi|203288576|ref|YP_002223483.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia duttonii Ly] gi|201084283|gb|ACH93871.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia duttonii Ly] Length = 707 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 165/712 (23%), Positives = 305/712 (42%), Gaps = 69/712 (9%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ L + ++ ++ P Y+ + ++ + ++ + Sbjct: 35 FYRLEKD-LEALSVFLEEIKSKSLKFENPNERMHYLIDNNLYEDFYQKYSEDQILEIYKA 93 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 ++ E Y+ Y Y L + + E + + V++ LA A+ Sbjct: 94 VEGEEFKFKSYMSASKFYKDYALKVKDTYFESYEDRIIAVSLFLA---DGCFDFALRLAL 150 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TPT N+G +L SCFL V D L I + L+K GG+ + Sbjct: 151 DMIKQRYQPATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALN 210 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R G I G ++GVIP +K+ D +Q G+RKGA YL +H D+E+FL Sbjct: 211 LSNIRARGEEIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFL 270 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL--YGKEFEIA 521 D +K D++ R ++ IPD F + Q+ + +P V L +F+ Sbjct: 271 DTKKINADEKSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFDKD 330 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y + ++ISA + ++ + FE+G+P+I ++ CN+ P + VG V Sbjct: 331 Y----DLLASNPRIIKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKM 386 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + C LGS+N++ + T+ A+ Sbjct: 387 SNLCTEIFQIQTPSVIGNYGEGDVIGYDVSCILGSLNIVNVINS------DFEFTVDLAM 440 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L +V+D + +K+N +RA+GLG+M L IPY S EA++ Sbjct: 441 RALTSVVDKSCINNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFM 500 Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRT 741 ++F+++ +S+ +A+ER + + FK S + G + + R E+ + Sbjct: 501 LLNFYSLKSSMNIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIP 560 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S+ W+ LK ++ G+ ++ +A+APT +I+ I + S+ P + + + + Sbjct: 561 SKSDWNNLKGDIQRYGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYY 620 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L E + + +A+ +D LI+ S Sbjct: 621 PMPYLSRE------------NAI-------------------FFKSAYYMDMRKLIDLVS 649 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ +DQ S LY+ +E S ++L +Y A GLK+ YY R+++ + E Sbjct: 650 EAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 701 >gi|251782829|ref|YP_002997132.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391459|dbj|BAH81918.1| ribonucleotide-diphosphate reductase alpha subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127634|gb|ADX24931.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 719 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 162/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%) Query: 228 LRREVLTTVYKKPQKATHHEMQCLYP-EYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M E I + + LA+ +K Sbjct: 28 LHKDKEALEAFFTENVLPNTMSFASVTEKIEYLISNDYIESAFIQKYRPEFITELADVIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 E ++ Y +Y L N +E + M A+ A E A + Sbjct: 88 AENFQFKSFMAAYKFYQQYALKTNDGDYYLESLEDRVMFNALYFA---DGNEALAKDLAI 144 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 K+ + I A L ++ + E+G+P+I D N +P G + S Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379 Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI + CNLGS N+L + +I+ R Sbjct: 380 NLCSEILQVQTPSLINDAQEFLQMGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTR 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N GLG MG S L HI Y SPE+VE D Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESVEFTDIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740 +++ + S +A+ER + F S + G + + L+ ++ + + + Sbjct: 495 MNYWTLVESNNIARERQTTFVGFDKSKYADGTYFDKYVTGQFVPKSDLVKDLFKDHFIPQ 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799 S W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + D + +A+++D +I+ Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|306827105|ref|ZP_07460400.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus pyogenes ATCC 10782] gi|304430700|gb|EFM33714.1| ribonuceloside diphosphate reductase, subunit alpha [Streptococcus pyogenes ATCC 10782] Length = 719 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 161/717 (22%), Positives = 284/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + +++ + + +F + LA+ +K E Sbjct: 32 KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELASIIKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV +E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + I A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382 Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + L+ + + + + S Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAS- 556 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + D + +A+++D +I+ + Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|209559613|ref|YP_002286085.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes NZ131] gi|209540814|gb|ACI61390.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Streptococcus pyogenes NZ131] Length = 719 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 160/720 (22%), Positives = 278/720 (38%), Gaps = 88/720 (12%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M E I + + L + +K Sbjct: 28 LHKDKEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEFITELDSIIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 E ++ Y +Y L N +E + RV +E A + Sbjct: 88 SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 K+ + I A L ++ + E+G+P+I D N +P G + S Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379 Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI + CNLGS N+L + +I+T R Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N GLG MG S L HI Y SPE++E D Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740 +++ + S +A+ER + F+ S + G + + L+ ++ + + + Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKDLFKDHFIPQ 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799 S W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + D + +A+++D +I+ Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|18138465|ref|NP_542569.1| ribonucleotide reductase [Halorubrum phage HF2] gi|32453892|ref|NP_861655.1| ribonucleotide reductase [Halovirus HF1] gi|18000406|gb|AAL54989.1| ribonucleotide reductase [Halorubrum phage HF2] gi|32346460|gb|AAO61366.1| ribonucleotide reductase [Halovirus HF1] Length = 805 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 155/707 (21%), Positives = 270/707 (38%), Gaps = 113/707 (15%) Query: 303 DRYFLHINGSRIEMPQAFFMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFN 360 + G+ IE F RVA +A E + + A EF + + + FM ++PTL N Sbjct: 44 RYFRKDSEGNIIEGADDLFRRVAENVAGAEEDGDFDTWADEFEHQMKTLRFMPNSPTLMN 103 Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420 +GT QLS+CF+ DD+ IF Q+ A++ + GG+G ++ +R GA I+ T G+ Sbjct: 104 AGTDMNQLSACFVIEPRDDMEDIFETAQQAALIFQSGGGVGYAFSHLRPKGAFINSTGGE 163 Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480 + G + F++V ++T V QGGKR+GA L H D+ F+ ++N G+ + N Sbjct: 164 ASGPVSFMRVFDETCNQVKQGGKRRGAQMGILRADHPDIGRFIVAKRNEGE----FANFN 219 Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDL------------------------------ 510 + D F++ V +TL+ P+ + Sbjct: 220 ISVATTDNFIEAVDAQESYTLYDPETDYEEPYTVRELSAHFYSPEYQDNPRDAFDDGEGA 279 Query: 511 ---------------HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 +LYG+ + + + R E+ ++ A +W M+ + Sbjct: 280 VVEENLWRDYADEIECELYGERVTLREKWEGHEGLRLEVGEPMELPAAFIWDVMIDGAWR 339 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINL-------- 607 G P + + N + T E CNLG INL Sbjct: 340 NGEPGLFNFEESNRQHSFDVEEYPEFRMNATNPCAEQMLVEYEACNLGHINLSLMLSEDA 399 Query: 608 ------------------------LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTI 643 + + D+++L TI R LDNV+ + I Sbjct: 400 PTYDEFLSDKLEDVASGDLSTREAVEWYFETAVDFNELDRTIEAGTRFLDNVVTQSDFPI 459 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 + + R IGLG+MGF L+ + +PY + ++ E+A M +I AS LA Sbjct: 460 PEITERVGGMRKIGLGIMGFAQMLYQMGVPYGTQDSYEVARCVMRYIDRRGTWASHRLAL 519 Query: 704 ERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNC 763 ERGA+S + S + + R L + +RN N Sbjct: 520 ERGAFSYWDKSKYADPTEYDEWFA----ARTGLDPEDWAGGFP-----------IRNHNI 564 Query: 764 MAIAPTATIANICGVSQSIDPS-----YQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDE 818 IAPT T + I + +P+ ++N+ + + + L++ DL + Sbjct: 565 TTIAPTGTTSMIGNTTGGCEPAYNVANFKNVSEDIQGDDLLVEFDDYFLRTLEENDLDVD 624 Query: 819 AMISD----LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLN 874 A+ + ++ ++ N IPD++ +I T ++ Q++ D S Sbjct: 625 AVKEEAETLMRNNEFDGVNDLSIPDEIAEIFVTTQDLSSEQHGLMQRAFQEFCDSGISKT 684 Query: 875 LYL-DEPSGKKLDFIYRQAWLMG-----LKTTYYLRSRSATSVEKST 915 + L +E + + Y+ A G +K R S +T Sbjct: 685 VNLPNEATHDDVADAYQLALDEGRRGAVIKGLTVYRDGSRDQQVLTT 731 >gi|52080344|ref|YP_079135.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus licheniformis ATCC 14580] gi|52785723|ref|YP_091552.1| ribonucleotide-diphosphate reductase subunit alpha [Bacillus licheniformis ATCC 14580] gi|319645871|ref|ZP_08000101.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp. BT1B_CT2] gi|52003555|gb|AAU23497.1| ribonucleoside-diphosphate reductase (major subunit) [Bacillus licheniformis ATCC 14580] gi|52348225|gb|AAU40859.1| NrdE [Bacillus licheniformis ATCC 14580] gi|317391621|gb|EFV72418.1| ribonucleoside-diphosphate reductase subunit alpha [Bacillus sp. BT1B_CT2] Length = 700 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 156/701 (22%), Positives = 295/701 (42%), Gaps = 66/701 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E + + + L E I+ ++ + + ++ Sbjct: 30 KEAVHSYFVDYINQNTVFFHDL-KEKIDYLIKNDYYEEEFLSRYTFEEIKEVFKEAYAKK 88 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y+ Y L N +E + R+++ +++A EF ++ Sbjct: 89 FRFPSFMSAFKFYNDYALKTNDKKKILERYED---RISIVALFFANGDKEKAKEFVRMMI 145 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + STPT N+ R +L SCFL V D L I A+ + L+K GG+ + + Sbjct: 146 NQEYQPSTPTFLNAGRKRRGELVSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSK 205 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G I ++GV+ +K+ ++ +Q G+R+G+ AYL +H D+ +FLD + Sbjct: 206 LRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGAAYLNIFHRDINDFLDTK 265 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K + D+ R ++ IPD F++ ++ +F P V + + E + E Y+ Sbjct: 266 KISADEDVRVKTLSIGVVIPDKFIELAREDKAAYVFYPHTVYKAYGEHLDEMD-MNEMYD 324 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 R + +K + I + K+ + E+G+P+I F+D N H+ V SNLC+ Sbjct: 325 RLVEDPRVKKEK-IHPRKMLEKLAMLRSESGYPYIMFQDNVNNVHANNHISKVKFSNLCS 383 Query: 587 EITL------NSSSEETA------VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E+ + + CNLGS+N+L N L T++ A L + Sbjct: 384 EVLQASQVSSYTDYGQEDEIGLDISCNLGSLNILNVMKN-----KSLEQTVKLATDSLTH 438 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V + N KK+N ++IGLG M L +I Y S EA + A+ ++F+ Sbjct: 439 VSETTNITNAPAVKKANKAMKSIGLGAMNLHGFLAQNNIAYESEEARDFANTFFMMMNFY 498 Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPW 746 +I S E+A+E+ Y ++GS + G + D +V M+ ++ W Sbjct: 499 SIERSAEIAKEKGETYHGYEGSAYATGEYFEKYVTQDFSPKFEKVAKLFEGMHIPTKEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 +LK+ VK G+ +S + IAPT +I+ + + S+ P + + ++ + Sbjct: 559 KQLKQFVKEHGLYHSYRLCIAPTGSISYVQSSTASVMPIMERIEERTYGNSKTYYP---- 614 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + + A+++D +++ S Q+ Sbjct: 615 ---------------------------MPGLAPSNWFYYKEAYDMDMFRVVDMISTIQQH 647 Query: 867 IDQAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ S L+L + + + L+ I A G+KT YY R++ Sbjct: 648 VDQGISFTLFLKDTMTTRDLNRIDLYAHHKGIKTLYYARTK 688 >gi|21910585|ref|NP_664853.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS315] gi|28895724|ref|NP_802074.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes SSI-1] gi|21904786|gb|AAM79656.1| putative ribonucleoside-diphosphate reductase 2 alpha subunit [Streptococcus pyogenes MGAS315] gi|28810973|dbj|BAC63907.1| putative ribonucleotide reductase alpha-chain [Streptococcus pyogenes SSI-1] Length = 719 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 160/717 (22%), Positives = 283/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + +++ + + +F + LA +K E Sbjct: 32 KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV +E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + I A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382 Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + L+ + + + + S Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAS- 556 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + D + +A+++D +I+ + Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|331703802|ref|YP_004400489.1| ribonucleoside diphosphate reductase subunit alpha [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802357|emb|CBW54511.1| Ribonucleoside diphosphate reductase alpha subunit [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 723 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 166/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%) Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + + ++R+ I + A L+ + + +K + + + Y Sbjct: 18 DEYIKLNARSKIFSKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 68 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 +E + + L + ++G ++ Y L + + Sbjct: 69 ----LLENQYYDSEIVNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 124 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 + RV M +A + F +TPT N+ +H + SC+L Sbjct: 125 YLETYT-DRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 183 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D++ I + + L+K GG+ T +R G+ I +G S G IP +K+ D Sbjct: 184 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 243 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +Q G+R+GA Y+ H D+ LD ++ D++ R ++ IPD+ + Sbjct: 244 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 303 Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP +V +++ E YE E IK ISA + + Sbjct: 304 RDNKDMALFSPYDVQKVYNKPLSDISITEKYYEILE----NPNIKKT-YISARKFFLTVA 358 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598 + FE+G+P+I F+D N R+ G + SNLC+EI S++ E Sbjct: 359 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFIKTGEDI 418 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + + + +I A+ LD V + + +K N + A+G Sbjct: 419 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVG 474 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L I Y SPEAV+ + ++++A AS +LAQE ++SF S + Sbjct: 475 LGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFA 534 Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G D + E+ + + S+ W +L + +K G+ NS+ MA+ Sbjct: 535 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIKLVEEIKKTGLANSHLMAV 594 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + V+ V ++ +N Y Sbjct: 595 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 643 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 G A+E+ P +I + Q+ +DQA SL L++ + + + L Sbjct: 644 AMG------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 685 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + Y A+ G + YY+R Sbjct: 686 NKAYVNAFKQGCSSIYYVR 704 >gi|332638432|ref|ZP_08417295.1| ribonucleotide-diphosphate reductase subunit alpha [Weissella cibaria KACC 11862] Length = 723 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 159/710 (22%), Positives = 293/710 (41%), Gaps = 72/710 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L ++ + L + F I + + + + L + LK + Sbjct: 34 KEALDAFIRENVVPNTLQFDSL-RDRFDYLIAHDFVDQKMLQQYSFNFITRLYDYLKAQ- 91 Query: 290 DFAF-EYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 DF F ++ Y +Y + N S + R+AM E+ A+ + + Sbjct: 92 DFQFKSFMAAYKFYAQYAVKTNDSEYYVENY-IDRIAMNALFYGAGNEELAMNLADEMVH 150 Query: 349 FHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+ +R +L SCF+ DD+ I + L+K GG+G + + + Sbjct: 151 QRYQPATPSFLNAGRSRRGELVSCFILQTTDDMNAIGRVINSALQLSKIGGGVGINLSNL 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA I G + + GV+P +K+ D+ NQ G+R GA YL +H D+ FL +K Sbjct: 211 REAGAPIKGISNAASGVVPVMKLLEDSFSYSNQMGQRNGAGVTYLSVFHPDIMSFLATKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD F + NA LFSP +V + + Y+ Sbjct: 271 ENADEKVRVKTLSLGVTVPDKFYDLIRSNADMFLFSPYDVEREYGE-PFNYIDITAEYDN 329 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +IK ++ I A L ++ M E+G+P++ D N +P G V SSNLC+E Sbjct: 330 MVANPKIKKYK-IRARDLENEISKMQQESGYPYVINIDTVNAANPIH--GKVISSNLCSE 386 Query: 588 ITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I + E S NL + N A ++ T +R L V D + Sbjct: 387 ILQVQKASEIDNEQQYVTMGSDVSCNLGSTNIVNMMATTDFARSVETMMRALTFVSDNSD 446 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + + N A+GLG MG + H+ Y EA++ + ++++ + AS Sbjct: 447 LDIVPSVQNGNRELHAVGLGAMGLHAFFAKNHMYYGDEEALDFTNVYFLMLNYYTLLASN 506 Query: 700 ELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 ++A+ER ++ F+ S + G + D A+V++ + ++ W LK+ Sbjct: 507 KIAKERGESFYEFEKSAYADGSYFNKYLMADWSPKTAKVQEIFEQHHFPTKHDWAMLKES 566 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELK 811 V+ G+ N+ +AIAPT +I+ + + S+ P + + G +L Sbjct: 567 VQKHGLYNAYRLAIAPTGSISYVNDSTASLHPIINKIEERQEKKIGKIYYPAPYL----- 621 Query: 812 QRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQ 871 + +P + +A+ +D +I+ + Q+ IDQ Sbjct: 622 ---------------------GTDTLP-----YYESAYNLDMRKVIDVYATAQQHIDQGM 655 Query: 872 SLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 +L L++ + + L+ + A+ G+K+ YY+R+ Sbjct: 656 ALTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRMYAYHKGVKSIYYVRT 705 >gi|50914443|ref|YP_060415.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS10394] gi|50903517|gb|AAT87232.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS10394] Length = 719 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 160/717 (22%), Positives = 283/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + +++ + + +F + LA +K E Sbjct: 32 KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV +E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + I A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382 Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQTPSLINDTQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + L+ + + + + S Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYADGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAS- 556 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 -DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + D + +A+++D +I+ + Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|293556437|ref|ZP_06675015.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] gi|291601401|gb|EFF31675.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecium E1039] Length = 625 Score = 289 bits (739), Expect = 2e-75, Method: Composition-based stats. Identities = 152/649 (23%), Positives = 268/649 (41%), Gaps = 81/649 (12%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 + Y++Y + N + RV + A + L S + +T Sbjct: 1 MAAYKFYNQYAMKTNDLEFYLENFE-DRVVFNALYLGNGDKDLAFKLLEELISQRYQPAT 59 Query: 356 PTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 PT N+G + ++ SCFL + D + I L L++ GG+G + + +R +GA I Sbjct: 60 PTFLNAGKKRRGEMVSCFLIDIDDSMLSIGRNLNSALQLSRIGGGVGVNLSNLRAMGAPI 119 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 S GV+P +K+ D+ NQ G+R GA YL +H D+ FL +K D++ Sbjct: 120 KEIANASSGVLPVMKLLEDSFSYSNQLGQRNGAGVVYLNVFHQDILNFLSTKKENADEKI 179 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R ++ +PD + + + N LF+P + +YG F E Sbjct: 180 RVKTLSLGLIVPDKYYELLKTNQPMYLFNP---YHVERVYGIPFSYVDLTKEYDNMVVND 236 Query: 535 KVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 + + I+A L +++ + E+G+P+I D N +P G + SNLC+EI Sbjct: 237 TIEKTVINARELEQEISRLQQESGYPYIINIDTANRTNPV--KGKIIMSNLCSEILQPQE 294 Query: 594 SEE------------TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INC 640 + CNLGS+N++ + +I AVR L V D ++ Sbjct: 295 PSKLNADLNYKQVGTDISCNLGSMNMVNLMKS-----SDFGKSIEYAVRALTTVTDQVHI 349 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + K N + IGLG MG +AL L + Y S EA+E D ++++ + AS + Sbjct: 350 EEVPTVSKGNALYHTIGLGAMGLHTALALNGLDYESEEALEFVDAFFLAMNYYTLKASHQ 409 Query: 701 LAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKKRV 753 +A E+ A+ F+ S + G + + E + + ++ + W +LK+ + Sbjct: 410 IAVEKSEAFHDFESSHYADGTYFDKYLEKDFEFQFDKVNEIFKQISLPTVSDWQQLKEDI 469 Query: 754 KTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQ 812 G+ + N +AIAP +I+ I S S+ P Q + + G +L N Sbjct: 470 MHDGLYHRNRLAIAPNGSISYINETSASLHPITQLIENRQEKKVGSIFYPAPYLSN---- 525 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + + TA+ +D +I+ ++ Q+ IDQ S Sbjct: 526 ---------------------------KTLRYYKTAYNMDQRKIIDIYAKAQQHIDQGMS 558 Query: 873 LNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 L L++ + + L+ + AW G+K+ YY+R+ Sbjct: 559 LTLFMRSVLPEGVYEWKSPGNSQLTTRDLNRLRNYAWTKGIKSLYYVRT 607 >gi|199598383|ref|ZP_03211802.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus HN001] gi|199590702|gb|EDY98789.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus HN001] Length = 723 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 156/711 (21%), Positives = 284/711 (39%), Gaps = 74/711 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL--KY 287 +E L + + L E +E + L L L ++ Sbjct: 34 KEALQAFLTENVAPNTMKFASL-QERLKYLVEHHYYEADFLKKYQPAFLEKLNQFLTAQH 92 Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 + +F +E + RV E AV+ + + Sbjct: 93 FQFKSFMAAYKYYAQYALKTDDETQYLEDYKD---RVFANALFFADGNEDLAVDLADEMI 149 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G +L SCFL + DD+ I A+ L++ GG+G + Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 210 LREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD + + + NA LFSP V + + + Y+ Sbjct: 270 KENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGK-PFSYVDITKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + +IK ++ I A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 329 KMVANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI + +E V S NL + N ++ VR L V D Sbjct: 386 EIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGHSVEAMVRALTYVTDHS 445 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + NH +IGLG MG + H+ Y SPE+++ + ++++ + AS Sbjct: 446 NIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTLKAS 505 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751 ++A+ER ++ +F+ S + G + +VRD ++ ++ W LK+ Sbjct: 506 NKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQALKE 565 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N MA+AP +I+ I S S+ P + + G Sbjct: 566 DVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAP------ 619 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 L ++ M + +A++ID +I+ + Q+ +DQ Sbjct: 620 ---GLSNDTM----------------------PYYQSAYDIDMRKVIDVYAAAQQHVDQG 654 Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ L++ + + L+ + A G+K+ YY+R+ Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSIYYIRT 705 >gi|242372964|ref|ZP_04818538.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W1] gi|242349290|gb|EES40891.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W1] Length = 698 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 165/709 (23%), Positives = 287/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + ++ + Y F +Y EE ++ + F Sbjct: 29 DQEALKVYLEEIHDKTI-YFDDEIERLHYLVDNNFYFNVFEKYTEESLREITEFAKSIHF 87 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 88 QFASYMSASKFYKDYALKTNDKSQFLEDYNQH---------------VAIVALYLANGDT 132 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 133 KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 313 DDIDLEKYYDDMVANPNIEKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 368 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 ++G + SNLCTEI N E + S NL + N + K ++ Sbjct: 369 SNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVH 428 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 429 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 488 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER Y F+ S + G + + +VR + Sbjct: 489 FFMMMNYYSIERSMEIAKERGERYQDFESSDYANGKYFEFYTSQEFEPQFEKVRQLFEGL 548 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W L+K V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 549 DIPTSDDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 608 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 609 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 637 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 638 LVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 686 >gi|203288310|ref|YP_002223360.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia recurrentis A1] gi|201085530|gb|ACH95103.1| ribonucleoside-diphosphate reductase, alpha subunit [Borrelia recurrentis A1] Length = 707 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 164/712 (23%), Positives = 304/712 (42%), Gaps = 69/712 (9%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 +L ++ L + ++ ++ P Y+ + ++ + ++ + Sbjct: 35 FYRLEKD-LEALSVFLEEIKSKSLKFENPNKRMHYLIDNNLYEDFYQKYSEDQILEIYKA 93 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 ++ E Y+ Y Y L + + E + + V++ LA A+ Sbjct: 94 VEGEEFKFKSYMSASKFYKDYALKVKDTYFESYEDRIIAVSLFLA---DGCFDFALRLAL 150 Query: 345 LLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + +TPT N+G +L SCFL V D L I + L+K GG+ + Sbjct: 151 DMIKQRYQPATPTFLNAGKYVRGELVSCFLLEVGDSLNSITFNISSAMQLSKIGGGVALN 210 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R G I G ++GVIP +K+ D +Q G+RKGA YL +H D+E+FL Sbjct: 211 LSNIRARGEEIRGICNVAKGVIPVMKLLEDGFNYADQMGQRKGAGAVYLNIFHYDIEDFL 270 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL--YGKEFEIA 521 D +K D++ R ++ IPD F + Q+ + +P V L +F+ Sbjct: 271 DTKKINADEKSRVQTLSLGVIIPDKFFELAKQDKNYYALAPYSVYKETGLMMNDIDFDKD 330 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 Y + ++ISA + ++ + FE+G+P+I ++ CN+ P + VG V Sbjct: 331 Y----DLLASNPRIIKKEISARDMLVRIAKLQFESGYPYIMYQTSCNLNHPLKEVGRVKM 386 Query: 582 SNLCTEITLNSSSE------------ETAVCNLGSINLLAHFANNQFDYDKLASTIRTAV 629 SNLCTEI + C LGS+N++ + + A+ Sbjct: 387 SNLCTEIFQIQTPSVIGNYGEGDVIGYDVSCILGSLNIVNVINS------DFEFIVDLAM 440 Query: 630 RVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 R L +V+D + +K+N +RA+GLG+M L IPY S EA++ Sbjct: 441 RALTSVVDKSCINNAPSVRKANDDYRAVGLGVMNLHGFLIKNKIPYESDEALDFVRTFFM 500 Query: 689 FISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDELA------MNRT 741 ++F+++ +S+ +A+ER + + FK S + G + + R E+ + Sbjct: 501 LLNFYSLKSSMNIAKERNSVFKDFKQSEYYNGNYFNMYLNEDFSPRSEVVREIFSCLQIP 560 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTV 801 S+ W+ LK ++ G+ ++ +A+APT +I+ I + S+ P + + + + Sbjct: 561 SKSDWNNLKGDIQRYGLYHAYRLAVAPTQSISYIQNATTSLMPIVEPVEARVYGNSTTYY 620 Query: 802 VNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESAS 861 +L E + + +A+ +D LI+ S Sbjct: 621 PMPYLSRE------------NAI-------------------FFKSAYYMDMRKLIDLVS 649 Query: 862 RRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVE 912 Q+ +DQ S LY+ +E S ++L +Y A GLK+ YY R+++ + E Sbjct: 650 EAQRHVDQGISTLLYVTNETSTRELVKLYIYAKNKGLKSLYYTRNKNLSVDE 701 >gi|94988800|ref|YP_596901.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS9429] gi|94992685|ref|YP_600784.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS2096] gi|94542308|gb|ABF32357.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS9429] gi|94546193|gb|ABF36240.1| Ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS2096] Length = 719 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 159/715 (22%), Positives = 278/715 (38%), Gaps = 84/715 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + +++ + + +F + LA +K E Sbjct: 32 KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV +E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + I A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPIN--GKIIMSNLC 382 Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AMNRTSRLP 745 + S +A+ER + F+ S + G + + + +L Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQAED 557 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 558 WKALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP-- 615 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 + D + +A+++D +I+ + Sbjct: 616 -----------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAAAT 646 Query: 865 KWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 647 EHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|300173990|ref|YP_003773156.1| ribonucleoside-diphosphate reductase subunit alpha [Leuconostoc gasicomitatum LMG 18811] gi|299888369|emb|CBL92337.1| ribonucleoside-diphosphate reductase, alpha subunit [Leuconostoc gasicomitatum LMG 18811] Length = 723 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 172/764 (22%), Positives = 291/764 (38%), Gaps = 118/764 (15%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L K+ + L + F E R E + L L+ + Sbjct: 35 EALDAFLKENVWPNVIQFDSL-ADRFEWLFENNFLERAFIEKYRLAFIEKLYTYLESQHF 93 Query: 291 FAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++ Y++Y L N +E RVAM +E+ A+ + + Sbjct: 94 NFKSFMAAFKFYNQYALKTNDGQQYVETYVD---RVAMNALYYADGREELALRLADEMIH 150 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + V Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTVNSALQLSKMGGGVGINVSNV 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G + + G++P +K+ D+ +Q G R+GA YL +H D+ FL +K Sbjct: 211 REAGAPVMGISNSAGGIVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ IPD F V +N LFSP +V +YGK F E Sbjct: 271 ENADEKIRVKTLSLGLTIPDKFYDLVRKNDVMYLFSPVDV---EKVYGKPFNYIDITSEY 327 Query: 528 QADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 K+ + + A L ++ + E+G+P++ D N +P G + SSNLC+ Sbjct: 328 DNMVNNDKITKYHVDARFLEEEISKLQQESGYPYVINIDVANRANPI--AGKIISSNLCS 385 Query: 587 EI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 EI + CNLGSIN++ A N ++ T VR L Sbjct: 386 EILQVQTPSELDNGQQYTRLGSDVSCNLGSINIVNMMATNN-----FGESVDTMVRALTY 440 Query: 635 VIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N AIGLG MG + + Y E+++ ++++ Sbjct: 441 VSDTSNLDVVPSIAKGNTEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTTTFFMTLNYY 500 Query: 694 AISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR------DELAMNRTSRLPW 746 +I AS+ +A+E + F+ S + G + + R N ++ W Sbjct: 501 SIKASMAIAKERNDTFFEFEKSTYADGSYFDKYLEEDWAPRTQKVAASFAQHNVPTKHDW 560 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 ELK V GM N+ AIAPT +I+ + + ++ P + + M G Sbjct: 561 AELKADVAKYGMYNAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQEGMIGKVYYPAP- 619 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L +E M + +A++ID +I+ + Q+ Sbjct: 620 --------GLNNETM----------------------PYYVSAYDIDMRKVIDIYAAAQE 649 Query: 866 WIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 IDQ +L L++ + + L + A+ G+K+ YY+R+ Sbjct: 650 HIDQGMALTLFMRSTLSSDLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT---- 705 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T + +N ECE C Sbjct: 706 ----FTDDNQESGVN------------------------ECESC 721 >gi|50365345|ref|YP_053770.1| ribonucleotide-diphosphate reductase subunit alpha [Mesoplasma florum L1] gi|50363901|gb|AAT75886.1| ribonucleoside-diphosphate reductase alpha chain [Mesoplasma florum L1] Length = 721 Score = 289 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 169/742 (22%), Positives = 295/742 (39%), Gaps = 79/742 (10%) Query: 195 ESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + + + ++R I + A KL + K + + + E Sbjct: 12 TDESDEYVTLNARAKI--------LAAGSDNFKLDVDAAKAYLKHHVEPRLVKFGSV-KE 62 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHING--S 312 + G L + + + ++G Y+ Y L Sbjct: 63 RIEYLVSNGYYEEELINKYTIEQIEEITDIAYGFHREFPSFMGAMKFYNSYGLKTFDGQK 122 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 +E + R M + A + L F +TPT N+G + + SC Sbjct: 123 YLENFED---RAVMNALFLGNGNFESATKTLRQLMLGRFQPATPTFLNAGKKQRGEYVSC 179 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 +L V D++ I A+ + L+K GG+ T +R LGA I ++ GVIP +K+ Sbjct: 180 YLLRVEDNMESICRAVTTSLQLSKRGGGVALCLTNLRELGAPIKQIANQATGVIPVMKIL 239 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D+ NQ G+R+GA YL H DV FLD ++ D++ R ++ IPD+ + Sbjct: 240 EDSFSYANQLGQRQGAGAVYLNAHHPDVMSFLDTKRENADEKIRIKSLSLGLVIPDITFE 299 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKML 550 +N LFSP +V YGK E Q + + I+A + + Sbjct: 300 LAQKNEEMALFSPYDVERE---YGKAMSDISITQEYQNLVKNPNIKKTYINARKFFLTVA 356 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS------------SSEETA 598 + FE+G+P+I F D N + G + SNLC+EI S S + Sbjct: 357 ELHFESGYPYILFDDTVNNNNAHAATGRIVMSNLCSEIAQVSTPSTFNDDLSFKSMGDDI 416 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + + A I ++ LD V + + ++ N + A+G Sbjct: 417 CCNLGSLNIAKVMESG----AEFAEVIEHSINALDLVSRTSDLSSAPSIQQGNKKNHAVG 472 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L I Y S EAV+ + ++++A AS +LA + G + F+ S + Sbjct: 473 LGAMNLHGFLATNFIWYNSIEAVDFTNMFFYAMAYNAFKASHKLALQYGTFDGFETSQFA 532 Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G D + E+ + + ++ W EL + +K G+ NS+ MA+ Sbjct: 533 DGSWFNKYTKCAEDKWTPETQRVRELFAQYNVTIPTQKDWIELVELIKKDGIANSHLMAV 592 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + V+ V ++ ++ + M Sbjct: 593 APTGSISYLSSCTPSLQPVVAPIEVRKEGKLGRIYVPAY--------NINFDNM------ 638 Query: 827 HDGSIGNIERIPDDLKKIHA-TAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 +A A+E+ PM +I+ + Q+ +DQA SL L++ + + + Sbjct: 639 ----------------AYYALGAYEVGPMPIIDIVAAAQQHVDQAISLTLFMTDQVTTRD 682 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 L+ Y A+ + YY+R R Sbjct: 683 LNKAYIHAFKKKCASIYYVRVR 704 >gi|57790964|ref|YP_182368.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 1] gi|5918980|gb|AAD56211.1|AF168792_12 ribonucleotide reductase large subunit [Gallid herpesvirus 1] Length = 785 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 176/737 (23%), Positives = 280/737 (37%), Gaps = 100/737 (13%) Query: 269 LHESMMDFDLVYLANDLKYERDF------AFEYLGLQILYDR---YFLHINGSRIEMPQA 319 L F L + +DF +GLQ Y + ++E Sbjct: 98 LSADCKQFILENAEHISAVVKDFYNGTYHQLARVGLQSAQKYESLYLGKLGNGKLESMGQ 157 Query: 320 FFMRVAMGLALKETE---------------KEKRAVEFYNLLSSFHFMCSTPTLFNSGTR 364 FF R++ A F+ LSS + TP + GT Sbjct: 158 FFTRLSAEAARGAFNIPQFAQALEVDGQVTPADVFTRFFTCLSSQLIVPPTPVMLFGGTS 217 Query: 365 HPQLSSCFLTTV--PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQ 422 +SCFL + +E + GG+G + Sbjct: 218 LAAYASCFLIDSSGRNTERRSMSLPEEVIPIMNNRGGIGISLPCLGAPQN--------ES 269 Query: 423 GVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTG-DDRRRTHDMNT 481 G + FLK + A N KR +C Y E WH D + L +R ++ ++ R ++ T Sbjct: 270 GCLGFLKALDSLVAASNGAAKRPTGLCVYFEPWHCDTLKILKIRGSSAGNEEFRCDNIFT 329 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKIS 541 A W+PDLFMKR+ Q L +L+G+EFE YE ER+ + + ++ Sbjct: 330 AIWMPDLFMKRLQQPGSKWTLFDHRGEHLSNLFGEEFEKEYERLERKMLEWPLSLSPRLC 389 Query: 542 AVALWRKMLTMLFETGHPWITFKDPCNIRS-PQQHVGVVHSSNLCTEITLNSSSEETAVC 600 + TG P++ FKD N + SNLCTEI + S+ VC Sbjct: 390 SDNQKCS------STGTPFVVFKDAFNRHYFYNMQHRALKCSNLCTEIAHMADSDTVGVC 443 Query: 601 NLGSINLLAHFAN----------NQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 NL SINL A N + FDY+ L T RTA + +I + ++A+ N Sbjct: 444 NLISINLAAMVKNARAGLAGKPGSFFDYELLRETARTATIFANVMISLGNMPSQRAQSGN 503 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYS 709 H R++G+G+ G +A + S E E D E ++ S L + + Sbjct: 504 HRLRSLGVGVQGLHTACLMQGFGMTSVEGFEFNDTVFELLALETTGISCRLCELGLPPFD 563 Query: 710 SFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPT 769 ++ S + G ID + WD L+ R+ G+ N +A+ PT Sbjct: 564 KYRESYYALGWLHIDGWPNTKLR---------YKNEWDSLRHRIDPSGLYNCQTVALMPT 614 Query: 770 ATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA---MISDLKY 826 A+ + I VS+ P + N++ K + +G+ + L++ + + +++LK Sbjct: 615 ASSSQITEVSEGFQPVFGNMFSKISTTGEEVRPHLALMDAIDELYSDQGEKQAFLANLKK 674 Query: 827 HDGSIG---NIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP--- 880 H S+ + TAFE+D L+ ++RR +ID +QS LY+ E Sbjct: 675 HQWSVRAALGSAWSESHVLAKFQTAFELDQEKLLYLSARRAPFIDHSQSNTLYITEDVDG 734 Query: 881 --SGKKLDFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 S ++ + + A+ GLKT YY + R T+ N V V Sbjct: 735 TLSASRVSRLLQVAFKYGLKTAMYYCKVRKITN-------------NGVFVG-------- 773 Query: 938 LGIPSSCTSDTECEVCQ 954 SC C CQ Sbjct: 774 -----SCGDSLICSACQ 785 >gi|71903781|ref|YP_280584.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes MGAS6180] gi|71802876|gb|AAX72229.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes MGAS6180] Length = 719 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 160/720 (22%), Positives = 277/720 (38%), Gaps = 88/720 (12%) Query: 228 LRREVLTTVYKKPQKATHHEMQ-CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M E I + + L + +K Sbjct: 28 LHKDKEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYRPEFITELDSIIK 87 Query: 287 YERDFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 E ++ Y +Y L N +E + RV +E A + Sbjct: 88 SENFRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAV 144 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGIT 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDI 321 Query: 524 NYERQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSS 582 K+ + I A L ++ + E+G+P+I D N +P G + S Sbjct: 322 TNMYDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMS 379 Query: 583 NLCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 NLC+EI + CNLGS N+L + +I+T R Sbjct: 380 NLCSEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTR 434 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D + + K N GLG MG S L HI Y SPE++E D Sbjct: 435 ALTFVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFML 494 Query: 690 ISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNR 740 +++ + S +A+ER + F+ S + G + + L+ + + + + Sbjct: 495 LNYWTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVPKSDLVKSLFKDHFIPQ 554 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDF 799 S W+ L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 555 AS--DWEALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKI 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 + D + +A+++D +I+ Sbjct: 613 YYP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDV 641 Query: 860 ASRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 642 YAAATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|70727161|ref|YP_254077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus haemolyticus JCSC1435] gi|68447887|dbj|BAE05471.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus haemolyticus JCSC1435] Length = 701 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 162/709 (22%), Positives = 289/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + LE++ + + + ++ + Y F +Y EE + ++F Sbjct: 32 DQEALAVYLEEIHDKTI-YFDSEIERLHYLVDNNFYFNVFDKYSEEDLVEITEFAKSINF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + + K+ +D+A + + Y H VA+ + Sbjct: 91 EFASYMSASKFYKDYALKTNDKSQYLEDYNQH---------------VAIVALYLADGNK 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 ++A +F + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 QQAKQFILAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + V +K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNI----VKKKKDAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 ++G + SNLCTEI N E + S NL + N + K+ ++ Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMETGKIKDSVH 431 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N +K+N ++GLG+M L I Y S EA + A+ Sbjct: 432 TGMDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANT 491 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDEL------AM 738 +++++I S+E+A+ER Y F+ S + G + E + E + Sbjct: 492 FFMMMNYYSIERSMEIAKERGEVYQDFEQSDYASGKYFEFYTSQEFEPKFEKVKRLFDHI 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W L+++V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 552 DIPTAKDWKALQEQVQQHGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 641 LIATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|258508469|ref|YP_003171220.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus GG] gi|257148396|emb|CAR87369.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus rhamnosus GG] gi|259649781|dbj|BAI41943.1| ribonucleotide reductase alpha subunit [Lactobacillus rhamnosus GG] Length = 723 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 156/711 (21%), Positives = 286/711 (40%), Gaps = 74/711 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL--KY 287 +E L + + L E +E + L L L ++ Sbjct: 34 KEALQAFLTENVAPNTMKFASL-QERLKYLVEHHYYEADFLKKYQPAFLEKLNQFLTAQH 92 Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 + +F +E + RV E AV+ + + Sbjct: 93 FQFKSFMAAYKYYAQYALKTDDGTQYLEDYKD---RVFANALFFADGNEDLAVDLADEMI 149 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G +L SCFL + DD+ I A+ L++ GG+G + Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 210 LREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD + + + NA LFSP V + + + Y+ Sbjct: 270 KENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGK-PFSYVDITKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + +IK ++ I A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 329 KMVANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI + +E V S NL + N ++ VR L V D Sbjct: 386 EIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGHSVEAMVRALTYVTDHS 445 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + NH +IGLG MG + H+ Y SPE+++ + ++++ + AS Sbjct: 446 NIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTLKAS 505 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751 ++A+ER ++ +F+ S + G + +VRD ++ ++ W LK+ Sbjct: 506 NKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQALKE 565 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N MA+AP +I+ I S S+ P + + G Sbjct: 566 DVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAP------ 619 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 L ++ M + +A++ID +I+ + Q+ +DQ Sbjct: 620 ---GLSNDTM----------------------PYYQSAYDIDMRKVIDVYAAAQQHVDQG 654 Query: 871 QSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ L++ ++ + + L+ + A G+K+ YY+R+ Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTNKMTTRDLNILRNYAHYKGIKSIYYIRT 705 >gi|139473585|ref|YP_001128301.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus pyogenes str. Manfredo] gi|134271832|emb|CAM30067.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus pyogenes str. Manfredo] Length = 719 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 160/717 (22%), Positives = 282/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + +++ + + +F + LA +K E Sbjct: 32 KEALKAFFAENVLPNTMSFTSITEKIEYLISNDYIESAFIQKYHPEF-ITELAGIIKSEN 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV +E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGEHYLENLED---RVLFNALYFADGQEDLAKDLAVEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 148 NQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGITLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 208 LREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + +N LFSP ++ YG F Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELARKNEDMYLFSP---YNVEKEYGIPFNYLDITNM 324 Query: 527 RQADRGEIKVFRK-ISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 K+ + I A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 325 YDELVANPKITKTKIKARDLETEISKLQQESGYPYIINIDTANKANPI--DGKIIMSNLC 382 Query: 586 TEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQTPSLINDAQEFVEMGTDISCNLGSTNILNMMTSP-----DFGRSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSSIEAVPTIKHGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLLNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + L+ + + + + S Sbjct: 498 WTLVESNNIARERQTTFVGFENSKYANGSYFDKYVTGHFVAKSDLVKSLFKDHFIPQAS- 556 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W L+ V+ G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 557 -DWKALRDAVQKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + D + +A+++D +I+ + Sbjct: 616 -------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSLTLFLRSELPMELYEWKTQSKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|317495972|ref|ZP_07954334.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424] gi|316913876|gb|EFV35360.1| ribonucleoside-diphosphate reductase [Gemella moribillum M424] Length = 696 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 172/691 (24%), Positives = 285/691 (41%), Gaps = 69/691 (9%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294 + ++ + + Y F +YIE+ + L F+ K+ +D+A + Sbjct: 44 KFSSEMKRLRYLVEENFYYNIFDKYIEDEIVECLELAKNFKFEFKSYMAASKFYKDYALK 103 Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 +Y + N Q F+ VAM L A E + + Sbjct: 104 TN----DKKQYLENFN-------QHVFI-VAMYLG---DGNTALAKELMISMLEQRLQPA 148 Query: 355 TPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 TPT NS +R +L SCFL V D L I L+K GG+ + + +R G Sbjct: 149 TPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGES 208 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G G ++GVIP K +Q G+R GA YL +H DV EFLD +K D+ Sbjct: 209 IKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEE 268 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R ++T +P LF +N + +F P + + + L + +IA E A+ Sbjct: 269 LRLPTISTGIIVPSLFFDLARENKEFYMFGPHSIYEEYGLVLDDIDIAEYYDEFVANENI 328 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNS- 592 IK RK A + + ++G+P++ FKD N + +G V SNLCTEI Sbjct: 329 IK--RKFDARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEIFQLQE 386 Query: 593 ------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 E + S NL + N + KL +I + + L V D Sbjct: 387 TSVIKDYGESDVIKRDISCNLASLNIVNVMESKKLKESIYSGMDALTFVSDSTKIKNAPG 446 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K+N ++GLG M L I Y S EA + A+ ++++ I S+++A+ER Sbjct: 447 VVKANEEFHSVGLGAMNLNGYLAKNLIAYDSEEAKDFANVFFMMMNYYTIERSMQIAKER 506 Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 + F+ S + G + I + E+ + + + ++ W LK RVK Sbjct: 507 KETFKDFEKSDYYNGAYFTKYITNDYLPKSDKVKELFEGIYIP--TKEDWHSLKNRVKEN 564 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+ ++ MAIAPT +I+ + + S+ P + +S + + +L Sbjct: 565 GLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPYL---------- 614 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + +AF +D M LI+ + Q+ IDQ S+ LY Sbjct: 615 ---------------------SPKTQWYYKSAFTMDQMKLIDLMAVIQEHIDQGISVILY 653 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++ + + ++L Y A GLK+ YY R++ Sbjct: 654 VNSDITTRELARYYIYAHHKGLKSLYYTRNK 684 >gi|328957626|ref|YP_004375012.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] gi|328673950|gb|AEB29996.1| ribonucleoside-diphosphate reductase subunit alpha [Carnobacterium sp. 17-4] Length = 725 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 164/691 (23%), Positives = 284/691 (41%), Gaps = 79/691 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF-EYLGLQILYDRYFLHING 311 E IEE + L +D+ Y R F F ++ Y +Y L N Sbjct: 58 DEKLNYLIEEDYIEEEFLLKYDRAFVRALFDDI-YSRKFRFRSFMSAFKFYTQYALKTND 116 Query: 312 --SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQL 368 +E + R+ + A + + + + +TPT N+ R +L Sbjct: 117 GERFLERYED---RIVFNALYLADGDTELASRLADEIVNQRYQPATPTFLNAGRKRRGEL 173 Query: 369 SSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL 428 SCFL DD+ I + L++ GG+G + + +R G I + S GV+P + Sbjct: 174 VSCFLIQATDDMNSIGRVVNSALQLSRIGGGVGVNLSNLRASGDPIKKIDNASSGVVPVM 233 Query: 429 KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDL 488 K+ D+ NQ G+R GA YL +H D+ FL +K D++ R ++ +PD Sbjct: 234 KLLEDSFSYSNQLGQRNGAGAVYLNVFHPDIVSFLSTKKENADEKIRVKTLSLGLVVPDK 293 Query: 489 FMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRK 548 F + + LFSP +V ++ + + Y+ + EI+ + ISA L + Sbjct: 294 FYELAAHDEQMYLFSPYDVERIYGE-PFAYIDITKEYDNMVNNEEIRKSK-ISARELENE 351 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCN 601 + + E+G+P+I D N +P G + SNLC+EI N+ + Sbjct: 352 ISKLQQESGYPYIINVDTANRENPVY--GTITMSNLCSEILQVQEPSLINNDQTYEHLGT 409 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGL 660 S NL + N ++I T VR L V D + + K N + IGLG Sbjct: 410 DISCNLGSTNIVNLMKSSDFGNSIDTMVRALTMVTDQSSIDAVPSIKNGNDKYHTIGLGA 469 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQG 719 MG + L L I Y SPE+VE D + ++++ + +S ++A+ER + +F+ S + G Sbjct: 470 MGLHTYLALNQIHYGSPESVEFTDVYFKLLNYYTLVSSNKVAKERNTTFYNFEKSSYANG 529 Query: 720 VFPIDSIG--------LLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + I + + D + + W LK+ V G+ + N +A+APT + Sbjct: 530 TYFDKYINENFVFSSEKVQHLFDGIQVPTI--EDWAALKEAVMRDGLYHQNRLAVAPTGS 587 Query: 772 IANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGS 830 I+ + S S+ P + + + +G FL N+ Sbjct: 588 ISYVNETSSSLHPITRLIEERQEKKTGKTYYPAPFLSND--------------------- 626 Query: 831 IGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL------------- 877 + +A+++D +I+ + QK IDQ SL L+L Sbjct: 627 ----------TMPYYTSAYDMDMRKVIDVYAAAQKHIDQGMSLTLFLRSEIPEGLYEWKN 676 Query: 878 ---DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + + + L+ + AW G+K+ YY+R+ Sbjct: 677 GRTTKQTTRDLNILRHYAWKKGVKSIYYVRT 707 >gi|326692190|ref|ZP_08229195.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc argentinum KCTC 3773] Length = 723 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 169/763 (22%), Positives = 292/763 (38%), Gaps = 116/763 (15%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L + + L E F E R E + L L+ E Sbjct: 35 EALDAFLTENVWPNVLKFDSL-SERFEWLFEHNFLERAFIEQYRLAFIEELYAYLEGENF 93 Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++ Y++Y L N +E RVAM E A+ + + Sbjct: 94 HFKSFMAAFKFYNQYALKTNDGQYYVETYID---RVAMNALYYAAGNEALALRLADEMIH 150 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + + Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNL 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K Sbjct: 211 REAGAPVMGIANSAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMAFLSTKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD F + V +N LFSP +V ++ + +I E Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYELVRKNEDMYLFSPADVEKVYGVPFNYVDITAEYDNM 330 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 A+ K +++A L ++ + E+G+P+I D N +P G + SSNLC+E Sbjct: 331 VANDQITKY--RLNARTLEEEISKLQQESGYPYILNVDVTNRANPI--AGKIVSSNLCSE 386 Query: 588 I------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 I + CNLGSIN++ A +++ T VR L V Sbjct: 387 ILQVQTPSELDNGQQYTRLGSDVSCNLGSINIVNMMATP-----DFETSVDTMVRALTFV 441 Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + K N AIGLG MG + + Y +++ +++++ Sbjct: 442 SDTSNLDVVPSIAKGNQEKHAIGLGAMGLAAYFAQNQMYYGDEASLDFTSTFFMTLNYYS 501 Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPWD 747 I AS++LA+E + + F S + G + D +V D + ++ W Sbjct: 502 IKASMKLAKERQEKFFEFDKSTYADGSYFDKYLTQDWTPKTPQVADAFANHHVPTQRDWL 561 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806 ELK+ V GM ++ AIAPT +I+ + + ++ P + + M G Sbjct: 562 ELKENVMKYGMYHAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQEGMIGKVYYPAP-- 619 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 L +E M + +A++ D +I+ + Q+ Sbjct: 620 -------GLNNETM----------------------PYYVSAYDTDMRKVIDVYAAAQEH 650 Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 IDQ +L L++ + + L + A+ G+K+ YY+R+ Sbjct: 651 IDQGMALTLFMRSTLSTALYEWKKGRTEKMTTRDLTILRHYAFNKGIKSLYYVRT----- 705 Query: 911 VEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T + +N ECE C Sbjct: 706 ---FTDDNQESGVN------------------------ECESC 721 >gi|42561372|ref|NP_975823.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492870|emb|CAE77465.1| ribonucleoside-diphosphate reductase alpha subunit [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 723 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 165/739 (22%), Positives = 296/739 (40%), Gaps = 85/739 (11%) Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + + ++R+ I + A L+ + + +K + + + Y Sbjct: 18 DEYIKLNARSKIFLKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 68 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 +E + + L + ++G ++ Y L + + Sbjct: 69 ----LLENQYYDSEILNKYSFDQISQLNHYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 124 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 + RV M +A + + F +TPT N+ +H + SC+L Sbjct: 125 YLETYT-DRVLMNALFLGNGNFNKAKDLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 183 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D++ I + + L+K GG+ T +R G+ I +G S G IP +K+ D Sbjct: 184 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 243 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +Q G+R+GA Y+ H D+ LD ++ D++ R ++ IPD+ + Sbjct: 244 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 303 Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP +V + E YE E IK ISA + + Sbjct: 304 RDNKDMALFSPYDVQKTYGKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 358 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598 + FE+G+P+I F+D N R+ G + SNLC+EI S++ E Sbjct: 359 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYNSDLSFIKTGEDI 418 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + + + +I A+ LD V + + +K N + A+G Sbjct: 419 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSASPSIQKGNALNHAVG 474 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L + I Y SPEAV+ + ++++A AS +LAQE ++SF S + Sbjct: 475 LGAMNLHGFLAINKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDQSRFA 534 Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G D + E+ + + S+ W +L + +K G+ NS+ MA+ Sbjct: 535 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQADWIQLVEEIKKTGLANSHLMAV 594 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 AP+ +I+ + + S+ P + V+ V ++ +N Y Sbjct: 595 APSGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 643 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 G A+E+ P +I + Q+ +DQA SL L++ + + + L Sbjct: 644 AMG------------------AYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 685 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + Y A+ G + YY+R Sbjct: 686 NKAYVNAFKQGCSSIYYVR 704 >gi|229552272|ref|ZP_04440997.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|258539682|ref|YP_003174181.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus rhamnosus Lc 705] gi|229314344|gb|EEN80317.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|257151358|emb|CAR90330.1| Ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus rhamnosus Lc 705] Length = 723 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 156/711 (21%), Positives = 284/711 (39%), Gaps = 74/711 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDL--KY 287 +E L + + L E +E + L L L ++ Sbjct: 34 KEALQAFLTENVAPNTMKFASL-QERLKYLVEHHYYEADFLKKYQPAFLEKLNQFLTAQH 92 Query: 288 ERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 + +F +E + RV E AV+ + + Sbjct: 93 FQFKSFMAAYKYYAQYALKTDDGTQYLEDYKD---RVFANALFFADGNEDLAVDLADEMI 149 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+G +L SCFL + DD+ I A+ L++ GG+G + Sbjct: 150 HQRYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G +G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL + Sbjct: 210 LREAGAPIKGIDGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD + + + NA LFSP V + + + Y+ Sbjct: 270 KENADEKYRVKTLSLGVIVPDKYYELIKANADMYLFSPYSVERAYGK-PFSYVDITKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + +IK ++ I A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 329 KMVANPDIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGRIIMSNLCS 385 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI + +E V S NL + N ++ VR L V D Sbjct: 386 EIMQVQVPSKLNNRQEYEVLGTDVSCNLGSTNIPNLMHSRDFGHSVEAMVRALTYVTDHS 445 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + NH +IGLG MG + H+ Y SPE+++ + ++++ + AS Sbjct: 446 NIDVVPSVQHGNHLAHSIGLGAMGLHTYFAKNHMYYGSPESLDFTNIYFLLLNYYTLKAS 505 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751 ++A+ER ++ +F+ S + G + +VRD ++ ++ W LK+ Sbjct: 506 NKIAKERGESFHNFENSKYADGSYFDKYLNQTWAPKYDKVRDLFKNIHIPTQADWQALKE 565 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N MA+AP +I+ I S S+ P + + G Sbjct: 566 DVMKNGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAP------ 619 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 L ++ M + +A++ID +I+ + Q+ +DQ Sbjct: 620 ---GLSNDTM----------------------PYYQSAYDIDMRKVIDVYAAAQQHVDQG 654 Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ L++ + + L+ + A G+K+ YY+R+ Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHYKGIKSIYYIRT 705 >gi|10834910|ref|NP_066871.1| ribonucleotide reductase subunit 1 [Gallid herpesvirus 3] gi|5102911|dbj|BAA78728.1| UL39 protein [Marek's disease virus serotype 2 MDV2] gi|5689311|dbj|BAA82935.1| UL39 product homolog [Marek's disease virus serotype 2 MDV2] gi|10800004|dbj|BAB16549.1| UL39 protein [Gallid herpesvirus 3] Length = 797 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 163/684 (23%), Positives = 277/684 (40%), Gaps = 78/684 (11%) Query: 286 KYERDFAFEYLGLQIL-------YDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKR 338 R + Y L+ L Y+ Y + + E FF+R+A A + + K+ Sbjct: 134 DMLRFYGVTYPWLKRLGLQSALKYEEYLTELEDGKKESLCQFFVRLAAAAATEASNKKAF 193 Query: 339 AVEF--------------YNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVP--DDLYG 382 + L+ F+ STP + G +SC+L + Sbjct: 194 MSALGTEVSTWETAFTAFFFALARQIFVPSTPCMLFLGREGTSTASCYLMDPRTINTHDT 253 Query: 383 IFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGG 442 + + GG+G + G++P +KV + +A N G Sbjct: 254 LKAIADDIVPHLLARGGIGISLQHLNQKT-----------GLMPVMKVLDSLVMAANAGE 302 Query: 443 KRKGAVCAYLETWHIDVEEFLDLRKNTGDDR-RRTHDMNTANWIPDLFMKRVT------Q 495 +R VC YLE WH D+ L++R + RR ++ A W DL KR + Sbjct: 303 RRPTGVCVYLEPWHADIMSALNMRGMMATEESRRCDNVFIALWTCDLLFKRYERHANGEK 362 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N WTLF S L L+G EFE Y E E + L ++ Sbjct: 363 NVTWTLFD-SRASILATLHGSEFEKEYNRLEA-----EGLGVASLPVRDLMFAIIKSAAS 416 Query: 556 TGHPWITFKDPCNIRSPQQHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 TG P+I FKD CN G + SNLCTEI + VC+L S+NL + Sbjct: 417 TGSPFILFKDACNKHYITDTQGDAIAGSNLCTEIIQKTDGNTNGVCSLVSVNLARCVFDE 476 Query: 615 Q----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 FD+ L +R A +++++ + K++ HR++G+G+ G +AL + Sbjct: 477 NGEKKFDFSALRRAVRLATVFVNSIMSSSDVPTAKSRSGKDRHRSMGIGVQGLHTALLSM 536 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLL 729 + + + + E + A++ S E + ++ F S + +G D Sbjct: 537 GLDLSDERVKPLNKQIFELMLLEAMTVSCEFCEGGLPAFADFSNSYYSRGRLHFDGW--- 593 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 + + W+ L++R++ G+ N+ +A+ PTA A + VS+S P + N+ Sbjct: 594 ------ANVGLSMPEEWNALRERIQASGLYNAQFVALMPTAASAQVTEVSESFLPVFSNM 647 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYH--------DGSIGNIERIPDDL 841 + K +G+ N+ L+ EL++ +E + ++GN L Sbjct: 648 FNKVTTAGELLRPNNQLMGELREIYADNEDRRLKAIAALECANWCVETALGNKPECSQLL 707 Query: 842 KKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL-----DFIYRQAWLMG 896 K + TAFE D LI+ + R ++DQ+QS+ L++ E + L + +A+ G Sbjct: 708 K--YKTAFEYDQSLLIDLCADRAPFVDQSQSMTLFVTEAADGTLLASHVMNLLLRAYKAG 765 Query: 897 LKT-TYYLRSRSATSVEKSTLKGV 919 LKT YY + R AT+ + G Sbjct: 766 LKTGMYYCKIRKATNAGVFSGNGE 789 >gi|251810164|ref|ZP_04824637.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis BCM-HMP0060] gi|293368192|ref|ZP_06614821.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W2(grey)] gi|251806216|gb|EES58873.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis BCM-HMP0060] gi|291317615|gb|EFE58032.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus epidermidis M23864:W2(grey)] Length = 698 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 163/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + + ++ + Y F +Y E + + + F Sbjct: 29 DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELIEITEYAKSIHF 87 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 88 QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 132 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 313 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 368 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 ++G + SNLCTEI N E + S NL + N + K ++ Sbjct: 369 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 428 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 429 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 488 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER Y F+ S + G + + +VR + Sbjct: 489 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 548 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 549 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 608 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 609 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 637 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 638 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686 >gi|256384255|gb|ACU78825.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385088|gb|ACU79657.1| ribonucleoside-diphosphate reductase, alpha subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455870|gb|ADH22105.1| ribonucleoside-diphosphate reductase, alpha subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 720 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 165/739 (22%), Positives = 295/739 (39%), Gaps = 85/739 (11%) Query: 199 ETALIFSSRTLI----EKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPE 254 + + ++R+ I + A L+ + + +K + + + Y Sbjct: 15 DEYIKLNARSKIFSKDQDNFQLDVKAAELYLKN-------YIEPRMKKFSSLKERLDY-- 65 Query: 255 YFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI 314 +E + + L + ++G ++ Y L + + Sbjct: 66 ----LLENKYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMGALKFFNAYGLKTFDTTM 121 Query: 315 EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFL 373 + RV M +A + F +TPT N+ +H + SC+L Sbjct: 122 YLETYT-DRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPTFLNAAKKHRGEYVSCYL 180 Query: 374 TTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 D++ I + + L+K GG+ T +R G+ I +G S G IP +K+ D Sbjct: 181 LRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIKNISGLSSGPIPVMKILED 240 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 + +Q G+R+GA Y+ H D+ LD ++ D++ R ++ IPD+ + Sbjct: 241 SFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKIRIKSLSLGLVIPDITFELA 300 Query: 494 TQNAGWTLFSPDEVSDLHD---LYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 N LFSP +V +++ E YE E IK ISA + + Sbjct: 301 RDNKDMALFSPYDVQKVYNKPLSDISITEKYYEMLE----NPNIKKT-YISARKFFLTVA 355 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------A 598 + FE+G+P+I F+D N R+ G + SNLC+EI S++ E Sbjct: 356 ELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTASEYSSDLSFVKTGEDI 415 Query: 599 VCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIG 657 CNLGS+N+ + + + +I A+ LD V + + +K N + A+G Sbjct: 416 CCNLGSLNIDKMMKSG----KEFSDSIYNAISALDIVSRNSDLSAAPSIQKGNAQNHAVG 471 Query: 658 LGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD 717 LG M L I Y SPEAV+ + ++++A AS +LAQE ++SF S + Sbjct: 472 LGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQEFEKFASFDESRFA 531 Query: 718 QG-------VFPIDSI----GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 G D + E+ + + S+ W +L + +K G+ NS+ MA+ Sbjct: 532 DGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIQLVEEIKKTGLANSHLMAV 591 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKY 826 APT +I+ + + S+ P + V+ V ++ +N Y Sbjct: 592 APTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQIN-FDNMGY----------Y 640 Query: 827 HDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKL 885 G A+E+ +I + Q+ +DQA SL L++ + + + L Sbjct: 641 AMG------------------AYELGADPIINIVAAAQQHVDQAISLTLFMTDKATTRDL 682 Query: 886 DFIYRQAWLMGLKTTYYLR 904 + Y A+ G + YY+R Sbjct: 683 NRAYVNAFKQGCSSIYYVR 701 >gi|22536603|ref|NP_687454.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae 2603V/R] gi|76798640|ref|ZP_00780866.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 18RS21] gi|77407709|ref|ZP_00784464.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] gi|22533440|gb|AAM99326.1|AE014211_3 ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 2603V/R] gi|76586005|gb|EAO62537.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 18RS21] gi|77173708|gb|EAO76822.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] Length = 721 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 169/724 (23%), Positives = 302/724 (41%), Gaps = 80/724 (11%) Query: 254 EYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR 313 E + L + + + ++ ++G Y+ Y L +R Sbjct: 52 EKLDYLVSNNYYESDLLKQYNLEFICQIFEHAYAKKFAFLNFMGALKFYNAYALKTEDNR 111 Query: 314 IEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCF 372 + + + RV M EK A + + + + F +TPT N+G + + SC+ Sbjct: 112 YYL-EHYEDRVVMNALFLAAGDEKAAYDLVDDMLANRFQPATPTFLNAGKKRRGEYISCY 170 Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAN 432 L + D++ I A+ + L+K GG+ T +R GA I G ++ G++P +K+ Sbjct: 171 LLRIEDNMESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLE 230 Query: 433 DTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKR 492 D+ NQ G+R+GA YL H +V FLD ++ D++ R ++ IPD+ + Sbjct: 231 DSFSYANQLGQRQGAGAVYLHAHHPEVLTFLDTKRENADEKIRIKSLSLGLVIPDITFEL 290 Query: 493 VTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLT 551 N LFSP D+ +YGK E + + + ISA L++ + Sbjct: 291 AKANKDMALFSP---YDIERVYGKPMSDISITEEYETLLANADIRKTFISARKLFQTIAE 347 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN------------SSSEETAV 599 + FE+G+P+I F+D N ++P + G + SNLC+EI + Sbjct: 348 LHFESGYPYILFEDTVNAKNPHKKEGRIVMSNLCSEIAQVNTASQFSEDLTFTKVGHDVC 407 Query: 600 CNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 CNLGSIN+ D++KL + A+ + D++ + KK N + A+GLG Sbjct: 408 CNLGSINIARAMDQ-AADFEKLIANSIRALDRVSRTSDLD--SAPSIKKGNAANHAVGLG 464 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 M L HI Y S EA++ D ++++A AS LA+E+G + F S + G Sbjct: 465 AMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKGTFEGFSESSYADG 524 Query: 720 VFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTAT 771 + E + E + S+ W +L + +K IG+ N++ +A+APT + Sbjct: 525 SYFYQYTEQNFEPKTQRVKNLLAEYGLTLPSQEDWRKLVQSIKEIGLANAHLLAVAPTGS 584 Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 I+ + + S+ P + V+ + V ++ Sbjct: 585 ISYLSSCTPSLQPVVSPVEVRKEGALGRVYVPAY-------------------------- 618 Query: 832 GNIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIY 889 +I D + A+E+ +I A+ QK IDQA SL L++ + + + L+ Y Sbjct: 619 ----KIDADNYVYYKKGAYEVGSEAIINIAAAAQKHIDQAISLTLFMTDQATTRDLNKAY 674 Query: 890 RQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTE 949 QA+ + YY+R R + + + S + + + + Sbjct: 675 IQAFKQKCASIYYVRVR-------------------QDILEGSESYDDMLDDFTSSDLED 715 Query: 950 CEVC 953 C+ C Sbjct: 716 CQSC 719 >gi|290580849|ref|YP_003485241.1| ribonucleotide reductase large subunit [Streptococcus mutans NN2025] gi|254997748|dbj|BAH88349.1| ribonucleotide reductase large subunit [Streptococcus mutans NN2025] Length = 719 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 164/760 (21%), Positives = 294/760 (38%), Gaps = 110/760 (14%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ K + + + ++A + + +F + L+ DL Sbjct: 32 KEALEAFFKENVKPNTKTFDSITDKIQFLVANDYIEAEFIAKYKSEF-IEQLSQDLHAY- 89 Query: 290 DFAF-EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 DF F ++ + +Y L N +E + RV E A + + Sbjct: 90 DFQFKSFMAAYKFHQQYALKTNDGEEYLESIED---RVLFNALYFADGNENLAHDLAMEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ IPD F + +N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGITIPDKFYELARRNEDMYLFSPYSIEREYGV-PYNYLDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + +I + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPKIIKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPI--DGKIIMSNLC 382 Query: 586 TEITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +EI ++E S NL + N +I+ R L V D Sbjct: 383 SEILQVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVTDS 442 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 443 SHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLVE 502 Query: 698 SVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+E + + F+ S + G + + + E+ + + W+ Sbjct: 503 SNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKVKELFKNHFIPQA--EDWEA 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L++ V G+ + N +A+AP +I+ I VS SI P + + + G Sbjct: 561 LRQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHPITRRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATQHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT-------- 701 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T G + N ECE C Sbjct: 702 FTDDGDEVGAN------------------------ECESC 717 >gi|27467431|ref|NP_764068.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis ATCC 12228] gi|57866331|ref|YP_187990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis RP62A] gi|282875688|ref|ZP_06284559.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis SK135] gi|27314974|gb|AAO04110.1|AE016745_209 ribonuceloside diphosphate reductase major subunit [Staphylococcus epidermidis ATCC 12228] gi|57636989|gb|AAW53777.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus epidermidis RP62A] gi|281295715|gb|EFA88238.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis SK135] gi|329723344|gb|EGG59874.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU144] gi|329737947|gb|EGG74171.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU045] Length = 701 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 163/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + + ++ + Y F +Y E + + + F Sbjct: 32 DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELIEITEYAKSIHF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 91 QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 ++G + SNLCTEI N E + S NL + N + K ++ Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 431 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER Y F+ S + G + + +VR + Sbjct: 492 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 552 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 641 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|312864803|ref|ZP_07725034.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] gi|311099930|gb|EFQ58143.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus downei F0415] Length = 719 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 162/717 (22%), Positives = 281/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ + + IE + LA DL E Sbjct: 32 KEALEAFFKENVLPNSMVFDSI-SQKINYLIENDYIEAEFIGKYKSEFIESLAKDL-QEA 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 DF F ++ Y +Y L N +E + RV E A + + Sbjct: 90 DFHFQSFMAAYKFYQQYALKTNDGTAYLESIED---RVLFNALYFADGNEVLAQDLAREM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDILSFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + +N LFSP V + + + E Y Sbjct: 267 KKENADEKIRVKTLSLGVTVPDKFYELARKNEDMYLFSPYTVEKEYGV-PYNYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I + ISA L ++ + E+G+P++ D N G + SNLC Sbjct: 326 DELVANPNITKTK-ISARELETEISKLQQESGYPYVVNVDTANR--SNPIDGKIVMSNLC 382 Query: 586 TEITLNS------------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI CNLGS N++ A+ +I+ R L Sbjct: 383 SEILQVQKPSLINDAQEFVQMGTDISCNLGSTNIVNMMASP-----DFGRSIKAMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L H+ Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSFLARHHMEYGSPESIEFTDIYFMLMNY 497 Query: 693 HAISASVELAQER-GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER ++ F+ S + G + + + E+ + + + Sbjct: 498 WTLVESNAIARERGQSFVGFEKSKYADGTYFDKYVTGQFQPKSAKVKELFAKHFIPQAG- 556 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L++ V G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 557 -DWEALRQAVMKDGLYHQNRLAVAPNGSISYINDVSASIHPIIQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 + D + +A+++D +I+ + Sbjct: 616 -------------------------------ASGLSTDTIPYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L++ + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSMTLFMRSELPQELYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT 701 >gi|222150733|ref|YP_002559886.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus caseolyticus JCSC5402] gi|222119855|dbj|BAH17190.1| ribonucleoside-diphosphate reductase major subunit [Macrococcus caseolyticus JCSC5402] Length = 701 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 156/668 (23%), Positives = 276/668 (41%), Gaps = 58/668 (8%) Query: 261 EEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGS--RIE 315 + V+ ++ +++ L + +KY +D F Y+ + Y L N +E Sbjct: 58 KYLVEQDFYYDLFNEYNETDLNDIIKYAQDIEFNFASYMSASKFFKDYALKTNDKQQYLE 117 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + + V++ LA +A + + + + +TPT N+G +L SCFL Sbjct: 118 DYKEHVIIVSLYLA---KGDVNKAKQLISAMIEQRYQPATPTFLNAGRARRGELVSCFLL 174 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D L I L+K GG+ + + +R G I G G ++GV+P K Sbjct: 175 EVDDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGG 234 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 +Q G+R GA YL +H DV EFLD +K D+ R ++T +P F Sbjct: 235 FSYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAK 294 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLF 554 + + +F+P V + L + I E A+ +K + A + + Sbjct: 295 EGKDFFMFAPHTVEREYGLTLDDLNIDEMYDELVANPNIMKKSK--DAREMLNLIAQTQL 352 Query: 555 ETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINL 607 ++G+P++ FKD N ++G + SNLCTEI N E + S NL Sbjct: 353 QSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNL 412 Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 + N + K ++ T + L V D + K+N ++GLG+M Sbjct: 413 GSLNIVNVMESKKFKDSVHTGMDALTTVSDEADIKNAPGVAKANRELHSVGLGVMNLHGY 472 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQE-RGAYSSFKGSLWDQGVFPIDS 725 L I Y S EA E A ++F+++ S+E+A E ++ F+ S + G + Sbjct: 473 LAKNQIGYESEEAKEFAATFFMMLNFYSLQRSMEIAMERNETFADFEKSDYASGKYFDKY 532 Query: 726 IGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + + + ++ S W +LK +V G+ ++ +AIAPT +I+ + + Sbjct: 533 VATDFRPKSDKVTALFEGIDMPSPEDWADLKDKVMKNGLFHAYRLAIAPTQSISYVQNAT 592 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 S+ P + ++ + + FL Sbjct: 593 SSVMPIVDQIERRTYGNAETFYPMPFL-------------------------------SP 621 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLK 898 + + +AF D M LI+ + Q+ IDQ S L+++ + S ++L +Y A GLK Sbjct: 622 ETMWFYKSAFNTDQMKLIDLIATIQEHIDQGISTILFVNSDISTRELARLYVYAHHKGLK 681 Query: 899 TTYYLRSR 906 + YY R++ Sbjct: 682 SLYYTRNK 689 >gi|329767979|ref|ZP_08259490.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] gi|328838464|gb|EGF88072.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] Length = 696 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 169/702 (24%), Positives = 288/702 (41%), Gaps = 58/702 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 KL ++V + + +EE + + + D L L Sbjct: 21 FFKLEKDVEAIEEFLREVDFRTVKFSSEMKRLRYLVEENFYYNIFDKYIEDEILECLELA 80 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEM---PQAFFMRVAMGLALKETEKEKRAVE 341 ++ +F Y+ Y Y L N + + Q F+ VAM LA A E Sbjct: 81 ANFKFEFK-SYMAASKFYKDYALKTNDKKQYLENFNQHVFI-VAMYLA---DGDVALAKE 135 Query: 342 FYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + +TPT NS +R +L SCFL V D L I L+K GG+ Sbjct: 136 LMISMLEQRLQPATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGV 195 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G G ++GVIP K +Q G+R GA YL +H DV Sbjct: 196 AINLSKLRARGESIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVL 255 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D+ R ++T +P LF +N + +F P + + + L + +I Sbjct: 256 EFLDTKKVNADEELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDI 315 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 A E A+ +K RK A + + ++G+P++ FKD N + +G V Sbjct: 316 AKYYDEFVANENIMK--RKFDARDMLNLIAQTQLQSGYPYLMFKDNANKDHALREIGQVK 373 Query: 581 SSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 SNLCTEI E+ + S NL + N + K+ +I + + L Sbjct: 374 MSNLCTEIFQLQETSIIKDYGEDDIIKRDISCNLASLNIVNVMESKKIKESIYSGMDALT 433 Query: 634 -NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 K+N ++GLG M L I Y S EA + A+ +++ Sbjct: 434 FVSNSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNY 493 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLP 745 + + S+++A++R + F+ S + G + D + + +V++ ++ +R Sbjct: 494 YTLERSMQIAKKRNETFKDFEKSDYYNGRYFTKYIENDYLPVTDKVKELFEGIHIPTRED 553 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK RVK G+ ++ MAIAPT +I+ + + S+ P + +S + + + Sbjct: 554 WRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPY 613 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L + + +AF ID M LI+ + Q+ Sbjct: 614 L-------------------------------SPKTQWFYKSAFTIDQMKLIDLMAVIQE 642 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ S+ L+++ + + ++L Y A GLK+ YY R++ Sbjct: 643 HVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK 684 >gi|237798941|ref|ZP_04587402.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021795|gb|EGI01852.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas syringae pv. oryzae str. 1_6] Length = 226 Score = 287 bits (733), Expect = 7e-75, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 4 SKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGKGAS 63 S A L+ P + ++VIKRNG V + KI+ AI KAF+AVEG A+ Sbjct: 10 SPTGAPQASQAPQDLSATAPGQ---LRVIKRNGTVVPYTDDKITVAITKAFLAVEGGNAA 66 Query: 64 RSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVLYRE 123 S R+ D + LTEQ + S +HIE+IQDQVE +LM++G K+ R+YV+YR+ Sbjct: 67 ASSRIHDTVARLTEQVSATFKRRMPSGGTIHIEEIQDQVELALMRAGEQKVARDYVIYRD 126 Query: 124 ERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLS 183 R+ RA ++ P ++I + DG+ + RL IV EAC GL +V + ++ + Sbjct: 127 SRAKERAVRAP-DEQVQAHPSIRITLADGSFAPLDMGRLNTIVTEACEGLAEVDANLIQT 185 Query: 184 ETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFL 224 ET KN+YDG++ D+ TAL+ ++RTL+E+EPNY+ VTAR L Sbjct: 186 ETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLL 226 >gi|223042914|ref|ZP_03612962.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus capitis SK14] gi|222443768|gb|EEE49865.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus capitis SK14] Length = 701 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 164/709 (23%), Positives = 287/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + ++ + Y F +Y EE ++ + + F Sbjct: 32 DQEALKVYLEEIHDKTI-YFDDEIERLHYLVDNDFYFNVFEKYSEEELREITEYAKSIHF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 91 QFASYMSASKFYKDYALKTNDKSQFLEDYNQH---------------VAIVALYLANGDT 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 371 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 +G + SNLCTEI N + + S NL + N + K ++ Sbjct: 372 SDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIVNVMESGKFRDSVH 431 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER +Y F S + G + + +VR + Sbjct: 492 FFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSKEFEPQFEKVRQLFDGL 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W L+K V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 552 DIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 641 LVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 689 >gi|289575761|ref|ZP_06455988.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis K85] gi|289540192|gb|EFD44770.1| ribonucleoside-diphosphate reductase subunit alpha nrdE [Mycobacterium tuberculosis K85] Length = 783 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 163/670 (24%), Positives = 274/670 (40%), Gaps = 74/670 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 71 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 686 Query: 885 LDF--IYRQA 892 ++ IYR A Sbjct: 687 VNKAQIYRLA 696 >gi|314933043|ref|ZP_07840409.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus caprae C87] gi|313654362|gb|EFS18118.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus caprae C87] Length = 701 Score = 287 bits (733), Expect = 8e-75, Method: Composition-based stats. Identities = 163/709 (22%), Positives = 287/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + L+++ + + + ++ + Y F +Y EE ++ + + F Sbjct: 32 DQEALKVYLKEIHDKTI-YFDDEIERLHYLVDNDFYFNVFEKYSEEELREITEYAKSIHF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 91 QFASYMSASKFYKDYALKTNDKSQFLEDYNQH---------------VAIVALYLANGDT 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 KQAKQFISSMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKERKDFYMFAPHTVKQEYGVTL 315 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 371 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 +G + SNLCTEI N + + S NL + N + K ++ Sbjct: 372 SDIGQIKMSNLCTEIFQLQETSIINDYGTQDEIKRDISCNLGSLNIVNVMESGKFKDSVH 431 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER +Y F S + G + + +VR + Sbjct: 492 FFMMMNYYSIERSMEIAKERGESYQDFDQSDYANGKYFEFYTSQEFEPQFEKVRQLFDGL 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W L+K V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 552 DIPTSEDWKALQKEVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 641 LVSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 689 >gi|296111475|ref|YP_003621857.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc kimchii IMSNU 11154] gi|295833007|gb|ADG40888.1| ribonucleotide-diphosphate reductase alpha subunit [Leuconostoc kimchii IMSNU 11154] Length = 723 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 166/765 (21%), Positives = 289/765 (37%), Gaps = 120/765 (15%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L K+ + L E F + R E + L L + Sbjct: 35 EALDAFLKENVWPNVMQFDSL-SERFDWLFQNNFLERTFIEKYRFEFIESLYAYLDAQHF 93 Query: 291 FAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++ Y++Y L N +E RVAM +E+ A+ + + Sbjct: 94 NFKSFMAAFKFYNQYALKTNDGQHYVETYVD---RVAMNALFYADGREELALRLADEMIH 150 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + + Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNI 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + + G++P +K+ D+ +Q G R+GA YL +H D+ FL +K Sbjct: 211 REAGAPVMAIANSAGGIVPVMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDIMSFLSTKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENY 525 D++ R ++ +PD F + V +N LFSP +V +YGK F Y Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYELVKKNDVMYLFSPVDV---EKVYGKAFNYIDITAEY 327 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + +I ++ + A L ++ + E+G+P+I D N G + SSNLC Sbjct: 328 DNMVANDQITKYK-VDARTLEEEISKLQQESGYPYIINIDVANR--SNPISGKIVSSNLC 384 Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGSIN++ A ++ T VR L Sbjct: 385 SEILQVQTPSDIDNGQQYTRLGSDVSCNLGSINIVNMMAT-----ADFGESVDTMVRALT 439 Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K NH AIGLG MG + + Y EA++ +++ Sbjct: 440 YVSDTSNLDVVPSIAKGNHEKHAIGLGAMGLAAYFAQNKMYYGDDEALDFTSTFFMTLNY 499 Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR------DELAMNRTSRLP 745 ++I ASV +A+E + F S + G + + + + ++ Sbjct: 500 YSIKASVAIAKERHEKFFEFDKSTYANGSYFDKYLETDWAPKTNKVIEAFAQHHIPTKHD 559 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W +L+ V GM N+ AIAPT +I+ + + ++ P + + M G Sbjct: 560 WVQLRDDVAKYGMYNAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQEGMIGKVYYPAP 619 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L +E M + +A++ D +I+ + Q Sbjct: 620 ---------GLNNETM----------------------PYYVSAYDTDMRKVIDVYAAAQ 648 Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + IDQ +L L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 649 EHIDQGMALTLFMRSTLPDGLYEWKNNRTNKMTTRDLTILRHYAFNKGIKSLYYIRT--- 705 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T + +N ECE C Sbjct: 706 -----FTDDNQESGVN------------------------ECESC 721 >gi|329736710|gb|EGG72975.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU028] Length = 701 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 162/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + + ++ + Y F +Y E + + + F Sbjct: 32 DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELIEITEYAKSIHF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 91 QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNIDKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 ++G + SNLCTEI N E + S NL + N + + ++ Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGEFRDSVF 431 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER Y F+ S + G + + +VR + Sbjct: 492 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 552 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 641 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|225870272|ref|YP_002746219.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. equi 4047] gi|225699676|emb|CAW93382.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. equi 4047] Length = 719 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 161/719 (22%), Positives = 279/719 (38%), Gaps = 86/719 (11%) Query: 228 LRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M E ++ ++ + +LA ++ Sbjct: 28 LHKDKEALEAFFTENVIPNTMSFSSINEKIAYLVDNDYIESAFIQNYSPEFISHLAKSIQ 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 E ++ Y +Y L N +E + M A+ A E A + Sbjct: 88 AEGFRFKSFMAAYKFYQQYALKTNDGNFYLESIEDRVMFNALYFA---DGDETLAKDLAI 144 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + NA LFSP V + L + Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARHNADMYLFSPYSVEREYGL-PFNYIDITS 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 MYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVINIDTANR--SNPIDGKIIMSN 380 Query: 584 LCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI + CNLGS N+L + +IR R Sbjct: 381 LCSEILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSP-----DFGRSIRAMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D N + K N GLG MG S L HI Y SPE++E D + Sbjct: 436 LTFVTDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S ++A+ER + F+ S + G + I L+ + + + + Sbjct: 496 NYWTLVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 + W L++ + T G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 A--DWKALRQAIMTDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + D + +A+++D +I+ Sbjct: 614 YP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + K +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATKHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|319401191|gb|EFV89406.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis FRI909] Length = 701 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 163/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + + ++ + Y F +Y E + + + F Sbjct: 32 DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELSEITEYAKSIHF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 91 QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNIEKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 371 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 ++G + SNLCTEI N E + S NL + N + K ++ Sbjct: 372 SNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 431 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 432 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER Y F+ S + G + + +VR + Sbjct: 492 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 552 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 641 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|77413116|ref|ZP_00789316.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] gi|77160817|gb|EAO71928.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 515] Length = 719 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 160/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E LT +K+ + + + ++ + L+ L +++ Sbjct: 32 KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 F F ++ Y +Y L N +E + RV EK A + + Sbjct: 90 KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEKLATDLALEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLRDAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I + I+A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPI--DGKIIMSNLC 382 Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + + + + Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L + + + +A+++D +I+ + Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|282918524|ref|ZP_06326261.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C427] gi|282317658|gb|EFB48030.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C427] Length = 718 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 161/695 (23%), Positives = 285/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 61 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + + R+ M + W +L++ Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKARELFDGMAIPTSEDWKKLQQD 582 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706 >gi|227550161|ref|ZP_03980210.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecium TX1330] gi|257897485|ref|ZP_05677138.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12] gi|227180728|gb|EEI61700.1| ribonucleotide-diphosphate reductase subunit alpha [Enterococcus faecium TX1330] gi|257834050|gb|EEV60471.1| ribonucleotide-diphosphate reductase [Enterococcus faecium Com12] Length = 827 Score = 286 bits (732), Expect = 1e-74, Method: Composition-based stats. Identities = 168/813 (20%), Positives = 297/813 (36%), Gaps = 129/813 (15%) Query: 221 ARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVY 280 +R ++ L R + K T ++ L +Y G+ + + + Sbjct: 36 SRLIM--LDRYAFKDMSGKT--LTVGDLVILTTHADPQYPARGI------GKIEEINKEQ 85 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMGLALKETEK 335 L ++ E + + + + E P + RVA G++ E EK Sbjct: 86 LIIRIEEEFQSSLTDP--EEIASGRVIRNINEV-EKPLELYFEQIAARVARGISDIEGEK 142 Query: 336 E-KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGALQENAM 392 + + EFY L+ + + + L+ +GT +C++ + D G+ QE Sbjct: 143 KAQFFTEFYQHLTEQNLIPAGRVLYGAGTNSEVTYFNCYVMPFIHDSRGGLAKHRQEVME 202 Query: 393 LAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYL 452 + GG+G + + +R A +HG NGKS G + +L + V QGG R+GA L Sbjct: 203 IMSRGGGVGTNGSTLRPKSAIVHGVNGKSSGSVSWLNDLANLTNLVEQGGSRRGAQMIML 262 Query: 453 ETWHIDVEEFL--------------------------------DLRKNTGDDRRRTHDMN 480 WH D+ EF+ + + + Sbjct: 263 NDWHPDIFEFIISKIQNPAILQNLIHTSQSPTVRQLASEKLTFEPLTANEKEWLEFLVDH 322 Query: 481 TANWIPDLFMK----RVTQNAGWTLFSPD----------------EVSDLHDLYGKEF-- 518 N + D F+K ++ +++ PD E + Y F Sbjct: 323 PTNDMEDKFLKTAQQKLKAGGTYSVKDPDFLTGANISVCLTKEFMEAVETDQTYELRFPA 382 Query: 519 ------EIAYENYERQADRGEIKVF----------RKISAVALWRKMLTMLFETGHPWIT 562 + + + G+++ + + I A LW + + P I Sbjct: 383 IEDYDASEMADYDQHWMEIGDVREWAETGRKVKIHQTIKARELWDLITYCATYSAEPGIF 442 Query: 563 FKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH--FANNQFDYD 619 F D N + Q + V ++N C E L AVCNL +INL D++ Sbjct: 443 FIDNANEMTNAQAYGQKVVATNPCGEQPLTPY----AVCNLAAINLANMVDKKTKVVDFE 498 Query: 620 KLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 KL +R +VR DNVID + +K ++ R +GLG+MG L Y S + Sbjct: 499 KLTDVVRASVRFQDNVIDATPYFFKKNEQQAKGERRVGLGVMGLADLLIYCEKVYGSEDG 558 Query: 680 VEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMN 739 + D+ E I+ A SVELA+E+G++ G ++ +R + Sbjct: 559 NRLVDQVFEKIAVTAYQTSVELAKEKGSFPFLVG----------KTVEETTALRQRFIES 608 Query: 740 RTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + + +++ + G+RNS+ + +APT + + GVS ++P + Y +S G F Sbjct: 609 GYMKKMPESIRQAILKYGIRNSHLLTVAPTGSTGTMAGVSTGLEPYFSFSYFRSGRLGKF 668 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 VN+ +V+E ++ N E+ D+L TA E+ P + Sbjct: 669 IEVNAEIVSEYLEK-------------------NPEKTADNLPPFFVTAMELSPKDHVSV 709 Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA-TSVEKSTLK 917 Q+W+D + S + K++ IY + G K S + V Sbjct: 710 QCTIQRWVDSSISKTVNAPKGYQVKQVAAIYEDLYQGGAKGGTVYVDGSRDSQVLTLEAD 769 Query: 918 GVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTEC 950 + V V D + SL + C Sbjct: 770 DNVFEEPVVGVADNQITLDSLESSEAEEICPIC 802 >gi|114776813|ref|ZP_01451856.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1] gi|114552899|gb|EAU55330.1| hypothetical protein SPV1_11376 [Mariprofundus ferrooxydans PV-1] Length = 723 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 145/658 (22%), Positives = 263/658 (39%), Gaps = 69/658 (10%) Query: 293 FEYLGLQILYDRYFLHIN-GSRIEM-PQAFFMRVAMGLAL--KETEKEKRAVEFYNLLSS 348 F+ I +Y L G I++ QA + RVA LA E +E F L++ Sbjct: 26 FQPASEDIWDKKYRLKDKLGREIDLDIQATYDRVATALAQVENEDVRELWHERFVWALAN 85 Query: 349 FHFMCSTPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + N+G + +C ++ T+PD + GI + E + K G+G + Sbjct: 86 GAI-PAGRIMSNAGAEAHKPATSTINCTVSGTIPDSMTGILSMVHEAGLTLKAGCGIGYE 144 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 ++ +R GA++ G + G + F+ + + V+ G R+GA + H D+ EF+ Sbjct: 145 FSTLRPKGAYVSGAGAYTSGPMSFMDIYDKMCFTVSSAGGRRGAQMGTFDISHPDIVEFI 204 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 ++ + R N + I FM+ V +A W L P +++ D + Sbjct: 205 RAKR----EDGRLRQFNLSCLITRDFMEAVKHDADWDLVFPASQTEIDDADTRIVFKPVA 260 Query: 524 NYERQADRGE-----IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 N + + + + KV++ + AV LW ++ ++ P D N + Sbjct: 261 NPPKGSVKDDRGHVACKVYKTMKAVRLWDVIMASTYDYAEPGFILIDEVNEMNNNWFCED 320 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLD 633 V ++N C E L C LGS+NL + FD+D + R+LD Sbjct: 321 VRATNPCGEQPLPPY----GACLLGSVNLTRFVRDPFTDNARFDWDTYREVVSIFTRMLD 376 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NV++IN +EK ++ R G+G +G S L +L PY S E++ ++ ++ Sbjct: 377 NVVEINGLPLEKQRQEIMRKRRHGMGFLGLGSTLTMLRTPYGSTESLAFTEQIAYEMART 436 Query: 694 AISASVELAQERGA-------YSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPW 746 +EL E+GA Y + + D I + V ++ + SR Sbjct: 437 GFQTGLELVDEKGAAPALTDLYEITPEMMAKRPEMADDGIKIGDMVAGKVLWGKYSRYMQ 496 Query: 747 D-----------ELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKS 793 L + ++ G R ++ +IAPT TI+ S I+PS+ + Y ++ Sbjct: 497 KFRDTANAEDAAMLDELIEK-GCRFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRN 555 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIP------DDLKKIHAT 847 + E ++ + +L + I N + +P L + Sbjct: 556 I------------IREGRKSKEKVDVFSYELLAYRAHI-NADAMPYATDENAKLPDYFIS 602 Query: 848 AFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 A E+ P ++ + Q+W+D + S + E + IY A+ GLK R Sbjct: 603 ADEVTPKQHVDIQAAAQRWVDSSISKTANVPTEFPYDEFKDIYLYAYEQGLKGCTTFR 660 >gi|242242100|ref|ZP_04796545.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis W23144] gi|242234413|gb|EES36725.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus epidermidis W23144] Length = 698 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 162/709 (22%), Positives = 288/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + + ++ + Y F +Y E + + + F Sbjct: 29 DQEALKVYLEEIH-DKMISFDDEIERLHYLVDNNFYFNVFEKYSEAELSEITEYAKSIHF 87 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + Y H VA+ Sbjct: 88 QFASYMSASKFYKDYALKTNDKTKFLEDYNQH---------------VAIVALYLANGNV 132 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 K+A +F + + + +TPT N+G +L SCFL + D L I L+K Sbjct: 133 KQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEIDDSLNSINFIDSTAKQLSK 192 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIF 252 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P V + L Sbjct: 253 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 312 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + E Y++ + + K A + + ++G+P++ FKD N Sbjct: 313 DDIDLEKYYDDMVANPNIEKKKK----DAREMLNMIAQTQLQSGYPYLMFKDNANKVHAN 368 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 ++G + SNLCTEI N E + S NL + N + K ++ Sbjct: 369 SNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNVMESGKFRDSVF 428 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 429 TGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 488 Query: 686 SMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER Y F+ S + G + + +VR + Sbjct: 489 FFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPKFEKVRQLFDGI 548 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + + W EL+ +V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 549 DIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 608 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 609 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 637 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 638 LVATIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686 >gi|260206384|ref|ZP_05773875.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis K85] Length = 751 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 163/670 (24%), Positives = 274/670 (40%), Gaps = 74/670 (11%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDF--IYRQA 892 ++ IYR A Sbjct: 655 VNKAQIYRLA 664 >gi|88800235|ref|ZP_01115803.1| hypothetical protein MED297_14097 [Reinekea sp. MED297] gi|88777081|gb|EAR08288.1| hypothetical protein MED297_14097 [Reinekea sp. MED297] Length = 716 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 128/623 (20%), Positives = 248/623 (39%), Gaps = 55/623 (8%) Query: 321 FMRVAMGLALKETEK--EKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 F RVA L+ E K +K E + + + + N+G + +C ++ Sbjct: 47 FARVAEALSSVEKNKAKKKEWHEKFLWALENGAIPAGRIVSNAGALEHKPATSTINCTVS 106 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + GI + E + K G+G +++ +R A + G + G + F+ + + Sbjct: 107 GTIEDSMDGILEKVHEAGLTLKAGCGIGYEFSTLRPKNAFVSGAGAYTSGPLSFMDIYDK 166 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA A + H DV +F+ ++ + R N + I FM+ V Sbjct: 167 MCFTVSSAGGRRGAQMATFDVSHPDVVDFIRAKR----EDGRLRQFNLSLLITMEFMEAV 222 Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 + W L P +V++ + K++ + + +V+R I A Sbjct: 223 KNDTDWPLVFPVSEAEVLRDGLDVNNPEQVIWKDWHVKDPYLQNDKGEIACRVYRIIKAR 282 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 LW ++T ++ P D N + + ++N C E L C LG Sbjct: 283 NLWNVIMTSTYDYAEPGFILIDKVNEYNNNWFCETIRATNPCGEQPLPPY----GSCLLG 338 Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 S+NL + F++DK +R R+LDNV++IN + + + R G+ Sbjct: 339 SVNLTRFVEDPFTENAKFNWDKFHEVVRIFTRMLDNVVEINGLPLPEQRDEITRKRRHGM 398 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----S 714 G +G S + +L + Y +V +E + ++ +++LA+E+G + + Sbjct: 399 GYLGLGSTITMLRMKYGDEASVAFTEEVTKAMALAGWETALDLAKEKGPAPIMEEEFEIT 458 Query: 715 LWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMA 765 P D + ++ + + SR EL + +G R ++ + Sbjct: 459 HEMVRKRPELLKDGYQVGDKLPGRILHAKYSRYMQQINDIAPELVDELAKVGARFTHHSS 518 Query: 766 IAPTATIAN-ICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISD 823 IAPT TI+ I S I+PS+ + Y ++ + ++ D++ +++ Sbjct: 519 IAPTGTISLSIANNASNGIEPSFAHHYSRNVI--------RAGKKSKEKVDVFSFELLAY 570 Query: 824 LKYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 K + P+ L T+ ++P ++ + Q WID + S + + + Sbjct: 571 RKLVNDKAMPYSDEPEAQLPDYFITSDSVEPKQHVDIQAASQIWIDSSISKTANVPTDYA 630 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 IY A+ GLK R Sbjct: 631 FDSFKDIYLYAYEQGLKGCTTFR 653 >gi|226312722|ref|YP_002772616.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus brevis NBRC 100599] gi|226095670|dbj|BAH44112.1| ribonucleoside-diphosphate reductase alpha chain [Brevibacillus brevis NBRC 100599] Length = 694 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 157/673 (23%), Positives = 281/673 (41%), Gaps = 53/673 (7%) Query: 260 IEEGVKARLLHESMMDFDLVYLAND--LKYERDFAF-EYLGLQILYDRYFLHINGSRIEM 316 ++ ++ + + + L Y+ DF F Y+ + Y Y L N + + Sbjct: 49 MDYLIENDFYENVYETYTVEQVDEVFRLAYDADFQFASYMAISKFYKDYALKTNDKSMYL 108 Query: 317 PQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT 375 Q RVA+ A + +TPT N+G ++ SCFL Sbjct: 109 EQYP-DRVAVVALSLGQGDFDLAKRLTVSMMDQRLQPATPTFLNAGKSRRGEMVSCFLLE 167 Query: 376 VPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTA 435 + D L I L L+K GG+ + + +RG G I G G ++GV+P LK+ D Sbjct: 168 MDDSLNSINFILGTCMQLSKIGGGVAVNLSKLRGRGEPIKGVEGAAKGVMPVLKLLEDAF 227 Query: 436 VAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQ 495 +Q G+RKG+ AY + D+ EFLD +K D++ R ++ +P++F K + Sbjct: 228 SYADQMGQRKGSGAAYYNIFGWDINEFLDCKKINADEKARIKTLSIGLIVPNVFYKLAEE 287 Query: 496 NAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFE 555 N T+F+P V + ++ + + E YE IK +SA + K+ + E Sbjct: 288 NKPLTVFAPYSVYKEYGVHLDDMD-LDEMYEELLANDRIKKKTVMSAREMLTKIAMIQME 346 Query: 556 TGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG-------SINLL 608 +G+P+I K N + +G V SNLCTEI + S NL Sbjct: 347 SGYPYIMNKTNANNNHALKDLGSVKMSNLCTEIFQLQETSTITNYGEMDIIRRDISCNLA 406 Query: 609 AHFANNQFDYDKLASTIRTAVRVLDNVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSAL 667 + N + + ++ + + V D+ +K+N ++GLG M L Sbjct: 407 SLNIVNVMERKMIRESVHEGIEAITAVSDMTRVENAPGVQKANRELHSVGLGAMNLNGYL 466 Query: 668 HLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPI--- 723 I Y S EA + A ++F+++ S+E+A+E G + F+ S + +G + Sbjct: 467 AKNRIAYESEEAKDFARTFFMMMNFYSLEKSMEIARETGMTFLGFEQSEYAKGTYFNKYV 526 Query: 724 --DSIGLLAEVRDELA-MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780 D + + M+ + W EL+++V+ G+ ++ +AIAPT +I+ I + Sbjct: 527 TNDYSPRTEKAKLLFEGMHIPTPADWAELQQKVQKHGVYHAYRLAIAPTQSISYIQNATS 586 Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 S+ P +++ ++ + +L + Sbjct: 587 SVMPIVEHIETRTYANSTTYYPMPYL-------------------------------SQE 615 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899 + +A+ ID +I+ + Q+ IDQ S L+++ S ++L Y A GLK+ Sbjct: 616 NYFYYKSAYVIDQFKVIDLIAEIQEHIDQGISTVLHVNSNISTRELARYYIYAAKKGLKS 675 Query: 900 TYYLRSRSATSVE 912 YY R++ T E Sbjct: 676 LYYTRTKHLTVEE 688 >gi|82750435|ref|YP_416176.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus RF122] gi|82655966|emb|CAI80370.1| ribonucelotide diphosphate reductase alpha chain [Staphylococcus aureus RF122] Length = 698 Score = 286 bits (731), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 41 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 100 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 383 IFQLQETSIINDYGIEDEIQRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686 >gi|294631833|ref|ZP_06710393.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. e14] gi|292835166|gb|EFF93515.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Streptomyces sp. e14] Length = 962 Score = 286 bits (731), Expect = 2e-74, Method: Composition-based stats. Identities = 124/628 (19%), Positives = 228/628 (36%), Gaps = 37/628 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 125 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 184 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 185 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVILD 243 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H DVE+F++ + + R D + + ++ Sbjct: 244 VDHPDVEDFIETKVKEEEKIRALRDAGF----------DMDLGGDDITSVQYQNANNSVR 293 Query: 514 YGKEFEIAYENYERQADRGE--IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRS 571 EF A E + R +V ++ A +L+RKM + P I + D N Sbjct: 294 VNDEFMKAVEQGGKFGLRARMTGEVIEEVEAKSLFRKMAEAAWACADPGIQYDDTINHWH 353 Query: 572 PQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIR 626 G ++ SN C+E + CNL S+NL+ + F+ ++ A + Sbjct: 354 TCPESGRINGSNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGHQSFEVERFAKVVE 409 Query: 627 TAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + +D I +K ++ R +G+G + L Y S +A Sbjct: 410 LVITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALAGAI 469 Query: 687 MEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNR----TS 742 ++ A S ELA G Y + + A ++ + Sbjct: 470 TSLMTGTAYKRSAELAAVVGPYDGYARNAQPHQRVMKQHADANAAAVRMDDLDTPVWAAA 529 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800 W ++ + + G RNS +APT TI + ++P + + K G Sbjct: 530 TEAWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQ 589 Query: 801 VVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMW 855 +VN + L++ +E + + + G++ + + + ++ A I PM Sbjct: 590 IVNGTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAPGLKQEHYEVFDCAMGERAISPMG 649 Query: 856 LIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKS 914 + + Q WI A S + + + ++++ IY +AW +G+K R S Sbjct: 650 HVRMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQPLS 709 Query: 915 -TLKGVDGKLNAVPVTDPNSSTHSLGIP 941 K + K AV P Sbjct: 710 AKTKDSEKKTEAVEEPQAKVEKVVEYRP 737 >gi|153005059|ref|YP_001379384.1| vitamin B12-dependent ribonucleotide reductase [Anaeromyxobacter sp. Fw109-5] gi|152028632|gb|ABS26400.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Anaeromyxobacter sp. Fw109-5] Length = 929 Score = 286 bits (731), Expect = 2e-74, Method: Composition-based stats. Identities = 123/621 (19%), Positives = 231/621 (37%), Gaps = 29/621 (4%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN-SGTRHPQLSSCFLTTVPDDLYGIFG 385 G E + + +L+ ++P FN HPQ S+CF+ +V D + I Sbjct: 115 GYFATEEDAAAFEADLAHLVYRQKMSFNSPVWFNVGVEEHPQCSACFINSVGDSMDSILR 174 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-R 444 ML KY G G++ + +R + G G++ G + F++ + A + GGK R Sbjct: 175 LAHTEGMLFKYGSGAGSNLSKIRSSKERLSG-GGEASGPVSFMRGFDAFAGVIKSGGKTR 233 Query: 445 KGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 + A L+ H D+ EF+ + + D V A ++F Sbjct: 234 RAAKMVILDADHPDIGEFVSCKADEEKKAWALIDAGYDGGFN------VKGGAYDSVFFQ 287 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + G + + R + I A L R++ + G P + F Sbjct: 288 NANHSIRVTDGFMRSVLDDRAWELTARTDGHALESIRARDLMRQITEAAWLCGDPGMQFD 347 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQ-FDYDKLAS 623 N +++SN C+E + + CNL S+NL+ + FD + Sbjct: 348 TTINAWHTCPATDRINASNPCSEYMF----LDDSACNLASLNLMHFRGIDGAFDVESFKR 403 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + V + ++ + E+ K++ +R +GLG + L +PY S A Sbjct: 404 AVDLTVLAQEILVSNAKYPTEQIGKNSEDYRPLGLGYANLGALLMASGLPYDSDGGRACA 463 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQ---GVFPIDSIGLLAEVRDELAMNR 740 ++ A + S +A+ G ++ ++ + + + + E + Sbjct: 464 GAITALMTGEAYAMSARIAERMGPFAGYERNREPFLGVVRKHANHVDRIDPTFVERPLLD 523 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGD 798 +R W + + G RN+ +APT TI + + I+P + Y K G Sbjct: 524 AARDAWGDALRLGTQSGYRNAQLTVLAPTGTIGFMMDCDTTGIEPDIALVKYKKLVGGGV 583 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDG--SIGNIERIPDDLKKIHATAF------- 849 +VN+ + L++ +A+ S L++ D +I + D + AF Sbjct: 584 LKIVNNTVPLALQRLGYSADAIASTLEFIDKVETIEGAPELRDAHLPVFDCAFKPQNGTR 643 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 I M I Q ++ A S + + E + ++ Y +AW +GLK R Sbjct: 644 SIHYMGHIRMMGAVQPFLSGAISKTVNMPTEATPADIETAYLEAWKLGLKAIAVYRDGCK 703 Query: 909 TSVEKSTLKGVDGKLNAVPVT 929 S +T K + + Sbjct: 704 RSQPLNTGKAKEEEKRESAGE 724 >gi|76787476|ref|YP_329565.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae A909] gi|76562533|gb|ABA45117.1| ribonucleoside-diphosphate reductase, alpha chain [Streptococcus agalactiae A909] Length = 719 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 158/717 (22%), Positives = 279/717 (38%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E LT +K+ + + + ++ + L+ L +++ Sbjct: 32 KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 F F ++ Y +Y L N +E + RV E+ A + + Sbjct: 90 KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEELATDLALEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I + I+A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382 Query: 586 TE------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +E CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQKPSLINDTQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + + + + Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L + + + +A+++D +I+ + Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|120554013|ref|YP_958364.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinobacter aquaeolei VT8] gi|120323862|gb|ABM18177.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Marinobacter aquaeolei VT8] Length = 712 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 131/623 (21%), Positives = 252/623 (40%), Gaps = 56/623 (8%) Query: 321 FMRVAMGLALKETE--KEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT 374 + RVA LA E + ++K EF L + + N+G + +C ++ Sbjct: 44 YERVAKALAEVEKKNLRDKYMKEFLWALQNGAI-PAGRITSNAGAEAHKPATSTINCTVS 102 Query: 375 -TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVAND 433 T+ D + I E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 103 GTIQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPRGAYVAGAGATTSGPLSFMDIFDR 162 Query: 434 TAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRV 493 V+ G R+GA A + H DV EF+ ++ + R N + I + F++ V Sbjct: 163 MCFTVSSAGGRRGAQMATFDVHHPDVIEFIQAKR----EDGRLRQFNLSLLITEDFIEAV 218 Query: 494 TQNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAV 543 W L P +++D ++F + + ++++ + A Sbjct: 219 RNGDDWHLSFPVTQKEADDEGLDLTDASQFVYRDFPVQEGYVVNNEGKVACRIYKTVKAQ 278 Query: 544 ALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG 603 +W ++T ++ P D N + + ++N C E L C LG Sbjct: 279 FIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPY----GSCLLG 334 Query: 604 SINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGL 658 S+NL F+Y+K + T R+LDNV++IN + + + R G+ Sbjct: 335 SVNLTKFVEYPFTEKASFNYEKYRKVVGTFTRMLDNVVEINGLPLGEQRHEITYKRRHGM 394 Query: 659 GLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKG----S 714 G++G S L +L +PY S E+V+ +E + ++ S+ LA+E+G + Sbjct: 395 GILGLGSTLAMLRMPYGSDESVKFTEEVVREMAVEGWRQSLALAEEKGPAPIMDDEFEVT 454 Query: 715 LWDQGVFPI---DSIGLLAEVRDELAMNRTSRLP------WDELKKRVKTIGMRNSNCMA 765 P D I + +V+ ++ + S EL ++ G R ++ + Sbjct: 455 PKMMTKCPKLAEDGIKVGDKVKGKVLHAKYSAYMGRIAEVEPELVAKLAEKGGRFTHHTS 514 Query: 766 IAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI-S 822 IAPT TI+ S I+PS+ + Y ++ + ++ D++ ++ Sbjct: 515 IAPTGTISLSLANNASNGIEPSFSHHYARNII--------REGRKTKEKVDVFSFELLAY 566 Query: 823 DLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPS 881 + G++ E L T+ ++ P ++ + QKW+D + S + E Sbjct: 567 RHLVNPGAMPFSEDEDKKLPSYFTTSDDVTPTQHVDIQAAAQKWVDSSISKTANVPTEFP 626 Query: 882 GKKLDFIYRQAWLMGLKTTYYLR 904 + IY A+ GLK R Sbjct: 627 YQDFKDIYLYAYDKGLKGCTTFR 649 >gi|323438920|gb|EGA96655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus O11] gi|323441868|gb|EGA99508.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus O46] Length = 698 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 287/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ ++ Y F Y E + + + F+ + K+ + Sbjct: 41 KDKTIFFDTEIERLSYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 100 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 383 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686 >gi|22536983|ref|NP_687834.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae 2603V/R] gi|77405563|ref|ZP_00782654.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] gi|77410694|ref|ZP_00787053.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] gi|22533838|gb|AAM99706.1|AE014229_7 ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae 2603V/R] gi|77163230|gb|EAO74182.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae CJB111] gi|77175870|gb|EAO78648.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae H36B] Length = 719 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 159/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E LT +K+ + + + ++ + L+ L +++ Sbjct: 32 KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 F F ++ Y +Y L N +E + RV E+ A + + Sbjct: 90 KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEELATDLALEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I + I+A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382 Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + + + + Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L + + + +A+++D +I+ + Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|288904914|ref|YP_003430136.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus gallolyticus UCN34] gi|288731640|emb|CBI13197.1| ribonucleoside-diphosphate reductase (major subunit) [Streptococcus gallolyticus UCN34] Length = 719 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 151/709 (21%), Positives = 275/709 (38%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ + + I+ + LA DL+ + Sbjct: 32 KEALRAFFRENVIPNSMAFDTIIDK-INYLIDNDYIEPEFISKYTPDFIESLAKDLQAQG 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N + E + R+ E+ A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGKYYLESIED---RILFNALYFADGNEELARDLATEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R + SCFL +V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGV-PYSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + I + I A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 327 KMVANPNIVKTK-IRARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 E+ ++E S NL + N D +I+ R L V D Sbjct: 384 EVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMDSPDFGRSIKAMTRALTFVSDTS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + + K N GLG MG + L HI Y SPE++E + +++ + S Sbjct: 444 SIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYWTLVES 503 Query: 699 VELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 +A+E + + F+ S + G + I + + S W +L+ Sbjct: 504 NHIARERQQTFVGFENSKYADGSYFDKYITGEFIPKSDRVKELFAEHFIPSGEDWAKLRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V T G+ + N +A+AP +I+ I VS S+ P Q + + G Sbjct: 564 AVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP-------- 615 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + D + +A+++D +I+ + + +DQ Sbjct: 616 -----------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 653 LSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|25010892|ref|NP_735287.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae NEM316] gi|23095271|emb|CAD46481.1| Unknown [Streptococcus agalactiae NEM316] Length = 719 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 160/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E LT +K+ + + + ++ + L+ L +++ Sbjct: 32 KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 F F ++ Y +Y L N +E + RV EK A + + Sbjct: 90 KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEKLATDLALEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I + I+A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPI--DGKIIMSNLC 382 Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + + + + Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L + + + +A+++D +I+ + Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|295406452|ref|ZP_06816258.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|294968597|gb|EFG44620.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] Length = 698 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 41 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 100 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 383 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686 >gi|253731357|ref|ZP_04865522.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724882|gb|EES93611.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|302750628|gb|ADL64805.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|320139938|gb|EFW31799.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320141973|gb|EFW33801.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 698 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 41 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 100 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 101 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 145 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 146 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 205 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 206 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 265 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 266 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 325 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 326 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 382 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 383 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 442 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 443 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 502 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 503 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 562 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 563 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 618 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 619 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 651 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 652 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 686 >gi|215447327|ref|ZP_03434079.1| ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T85] Length = 699 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 160/668 (23%), Positives = 271/668 (40%), Gaps = 72/668 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDFIYRQA 892 ++ A Sbjct: 655 VNKAQIYA 662 >gi|15923721|ref|NP_371255.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus Mu50] gi|15926408|ref|NP_373941.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus N315] gi|156979059|ref|YP_001441318.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus Mu3] gi|258418264|ref|ZP_05682529.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9763] gi|258421561|ref|ZP_05684486.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9719] gi|258430756|ref|ZP_05688468.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9299] gi|258441752|ref|ZP_05691024.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A8115] gi|258445807|ref|ZP_05693984.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6300] gi|258449618|ref|ZP_05697720.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6224] gi|258454018|ref|ZP_05701990.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5937] gi|282894499|ref|ZP_06302728.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A8117] gi|282926596|ref|ZP_06334226.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A10102] gi|13700622|dbj|BAB41919.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus N315] gi|14246500|dbj|BAB56893.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus Mu50] gi|156721194|dbj|BAF77611.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus Mu3] gi|257839057|gb|EEV63536.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9763] gi|257842487|gb|EEV66911.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9719] gi|257849428|gb|EEV73398.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A9299] gi|257852221|gb|EEV76148.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A8115] gi|257855383|gb|EEV78321.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6300] gi|257857126|gb|EEV80025.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A6224] gi|257863883|gb|EEV86639.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5937] gi|282591489|gb|EFB96561.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A10102] gi|282763212|gb|EFC03343.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A8117] gi|285816433|gb|ADC36920.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus aureus 04-02981] Length = 718 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 61 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 120 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706 >gi|151220912|ref|YP_001331734.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus str. Newman] gi|257424851|ref|ZP_05601278.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427519|ref|ZP_05603918.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430150|ref|ZP_05606534.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus 68-397] gi|257432851|ref|ZP_05609211.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus E1410] gi|257435755|ref|ZP_05611803.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M876] gi|258452939|ref|ZP_05700933.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5948] gi|282903361|ref|ZP_06311252.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C160] gi|282905139|ref|ZP_06312997.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908117|ref|ZP_06315948.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910376|ref|ZP_06318180.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913571|ref|ZP_06321360.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|282922027|ref|ZP_06329724.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9765] gi|282923490|ref|ZP_06331170.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C101] gi|283769894|ref|ZP_06342786.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus H19] gi|283957563|ref|ZP_06375016.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293500616|ref|ZP_06666467.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509564|ref|ZP_06668275.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M809] gi|293524150|ref|ZP_06670837.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|150373712|dbj|BAF66972.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus aureus subsp. aureus str. Newman] gi|257272421|gb|EEV04544.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275712|gb|EEV07185.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279347|gb|EEV09948.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus 68-397] gi|257282266|gb|EEV12401.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus E1410] gi|257284946|gb|EEV15065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M876] gi|257859450|gb|EEV82304.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus A5948] gi|282314358|gb|EFB44748.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C101] gi|282322603|gb|EFB52925.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|282325768|gb|EFB56076.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327782|gb|EFB58064.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331964|gb|EFB61475.1| ribonucleoside-diphosphate reductase alpha subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282593685|gb|EFB98677.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9765] gi|282596316|gb|EFC01277.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus C160] gi|283460041|gb|EFC07131.1| ribonucleoside-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus H19] gi|283791014|gb|EFC29829.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290921113|gb|EFD98174.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095621|gb|EFE25882.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467661|gb|EFF10176.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus M809] Length = 718 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 61 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706 >gi|319744838|gb|EFV97176.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus agalactiae ATCC 13813] Length = 719 Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats. Identities = 159/717 (22%), Positives = 280/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E LT +K+ + + + ++ + L+ L +++ Sbjct: 32 KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 F F ++ Y +Y L N +E + RV E+ A + + Sbjct: 90 KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFANGDEELATDLALEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I + I+A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382 Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + + + + Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFANHFIPEA-- 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L + + + +A+++D +I+ + Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|225868772|ref|YP_002744720.1| ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. zooepidemicus] gi|225702048|emb|CAW99656.1| putative ribonucleoside-diphosphate reductase alpha chain [Streptococcus equi subsp. zooepidemicus] Length = 719 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 158/719 (21%), Positives = 275/719 (38%), Gaps = 86/719 (11%) Query: 228 LRREVLTTVYKKPQKATHHEMQCLY-PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLK 286 L ++ + + M E ++ ++ + +LA ++ Sbjct: 28 LHKDKEALEAFFAENVIPNTMSFSSINEKIAYLVDNDYIESAFIQNYSPEFISHLAKSIE 87 Query: 287 YERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYN 344 E ++ Y +Y L N +E + RV E A + Sbjct: 88 AEGFRFKSFMAAYKFYQQYALKTNDGNFYLESIED---RVLFNALYFADGDEALAKDLAI 144 Query: 345 LLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 + + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G Sbjct: 145 EMINQRYQPATPSFLNAGRSRRGELVSCFLLQVTDDMNAIGRSINSALQLSRIGGGVGIS 204 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFL 463 + +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL Sbjct: 205 LSNLREAGAPIKGYAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLSVFHPDIIAFL 264 Query: 464 DLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYE 523 +K D++ R ++ +PD F + N LFSP V + L + Sbjct: 265 STKKENADEKVRVKTLSLGITVPDKFYELARHNDDMYLFSPYSVEKEYGL-PFNYIDITS 323 Query: 524 NYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSN 583 Y+ I + I A L ++ + E+G+P++ D N G + SN Sbjct: 324 MYDELVANPNITKTK-IKARDLETEISKLQQESGYPYVINIDTANR--SNPIDGKIIMSN 380 Query: 584 LCTEITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRV 631 LC+EI + CNLGS N+L + +I+ R Sbjct: 381 LCSEILQVQTPSLINDAQEFVKMGTDISCNLGSTNILNMMTSP-----DFGRSIKAMTRA 435 Query: 632 LDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFI 690 L V D N + K N GLG MG S L HI Y SPE++E D + Sbjct: 436 LTFVTDSSNIEAVPTVKNGNSQAHTFGLGAMGLHSYLAQHHIEYGSPESIEFTDIYFMLM 495 Query: 691 SFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRT 741 ++ + S ++A+ER + F+ S + G + I L+ + + + + Sbjct: 496 NYWTLVESNQIARERQTTFVGFEKSTYASGAYFDQYITGECVPKSELVKSLFKDHFIPQA 555 Query: 742 SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFT 800 + W L++ V G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 A--DWKALRQAVMIDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIY 613 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 + D + +A+++D +I+ Sbjct: 614 YP-------------------------------ANGLSTDTIPYYTSAYDMDMRKVIDVY 642 Query: 861 SRRQKWIDQAQSLNLYLDEP--------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 + K +DQ SL L+L + + L + A+ G+K+ YY+R+ Sbjct: 643 AAATKHVDQGLSLTLFLRSELPKELYEWKTESKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|258423380|ref|ZP_05686271.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9635] gi|257846441|gb|EEV70464.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9635] Length = 718 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 61 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMENGKFRDSVHSGMDALTVVSDVAN 462 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 639 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 671 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706 >gi|21282422|ref|NP_645510.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MW2] gi|49482988|ref|YP_040212.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MRSA252] gi|49485603|ref|YP_042824.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MSSA476] gi|57651568|ref|YP_185667.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus COL] gi|87160290|ref|YP_493419.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161508996|ref|YP_001574655.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141145|ref|ZP_03565638.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732822|ref|ZP_04866987.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH130] gi|284023752|ref|ZP_06378150.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus 132] gi|297208542|ref|ZP_06924971.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590339|ref|ZP_06948978.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MN8] gi|300912634|ref|ZP_07130077.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH70] gi|14329709|emb|CAC40667.1| ribonucleotide-diphosphate reductase alpha chain [Staphylococcus aureus] gi|21203859|dbj|BAB94558.1| ribonuceloside diphosphate reductase major subunit [Staphylococcus aureus subsp. aureus MW2] gi|49241117|emb|CAG39795.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus aureus subsp. aureus MRSA252] gi|49244046|emb|CAG42472.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285754|gb|AAW37848.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus COL] gi|87126264|gb|ABD20778.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367805|gb|ABX28776.1| ribonuceloside diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729187|gb|EES97916.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH130] gi|269940308|emb|CBI48685.1| ribonucleoside-diphosphate reductase alphachain [Staphylococcus aureus subsp. aureus TW20] gi|283470025|emb|CAQ49236.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus ST398] gi|296886797|gb|EFH25701.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576638|gb|EFH95353.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MN8] gi|298694062|gb|ADI97284.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus ED133] gi|300886880|gb|EFK82082.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH70] gi|302332441|gb|ADL22634.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|312438844|gb|ADQ77915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus TCH60] gi|315196403|gb|EFU26754.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus CGS01] gi|329313452|gb|AEB87865.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus T0131] gi|329728551|gb|EGG64984.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 21189] Length = 701 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 44 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 103 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689 >gi|148267191|ref|YP_001246134.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus JH9] gi|150393240|ref|YP_001315915.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus JH1] gi|253315836|ref|ZP_04839049.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005522|ref|ZP_05144123.2| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794948|ref|ZP_05643927.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9781] gi|296275140|ref|ZP_06857647.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus MR1] gi|147740260|gb|ABQ48558.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945692|gb|ABR51628.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|257788920|gb|EEV27260.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus A9781] gi|312829223|emb|CBX34065.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129413|gb|EFT85406.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus CGS03] gi|329724567|gb|EGG61074.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus aureus subsp. aureus 21172] Length = 701 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 44 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 103 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689 >gi|170017905|ref|YP_001728824.1| ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20] gi|169804762|gb|ACA83380.1| Ribonucleotide reductase, alpha subunit [Leuconostoc citreum KM20] Length = 723 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 169/764 (22%), Positives = 293/764 (38%), Gaps = 118/764 (15%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L K+ + L + F + R + L L+ E Sbjct: 35 EALDAFLKENVWPNVLKFDSL-AQRFDWLFDNQFIEREFIAQYDLSFIEKLYAYLEGEHF 93 Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++ Y++Y L N +E RVAM +E A++ + + Sbjct: 94 NFKSFMAAFKFYNQYALKTNDGQYYVETYVD---RVAMNALYYANGQESLALKLADEMIH 150 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + V Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINVSNV 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K Sbjct: 211 REAGAPVMGIANSAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSIFHPDIMAFLSTKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENY 525 D++ R ++ +PD F + V QN LFSP +V +YG+ F Y Sbjct: 271 ENADEKVRVKTLSLGLTVPDKFYELVRQNKTMYLFSPVDV---EKVYGQSFNYVDITAEY 327 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + + I +R + A L ++ + E+G+P+I D N G + SSNLC Sbjct: 328 DNMVENDAITKYR-VDARMLEEEISKLQQESGYPYIINIDVANR--ENPIAGKIVSSNLC 384 Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI + CNLGSIN++ A FD +++ T VR L Sbjct: 385 SEILQVQRPSDIDNGQQYTRLGSDVSCNLGSINIVNMMATQDFD-----TSVDTMVRALT 439 Query: 634 NVIDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D + + K N AIGLG MG + + Y EA++ +++ Sbjct: 440 FVSDTSNLDVVPSIDKGNKEKHAIGLGAMGLAAYFAQNQMYYGDEEALDFTTTFFMTLNY 499 Query: 693 HAISASVELAQE-RGAYSSFKGSLWDQGVFPIDSIGLLAEVR------DELAMNRTSRLP 745 ++I +S+ +A+E + F+ S + G + I + + + ++ Sbjct: 500 YSIKSSMRIAKERHETFYEFEKSTYANGAYFDKYINNDWQPKTQKVAQAFAPHHLPTKND 559 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK V GM ++ AIAPT +I+ + + ++ P + + Sbjct: 560 WLTLKDDVAKYGMYHAYRHAIAPTGSISYVNDTTATLLPIVNKIEERQ------------ 607 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 E MI + Y + D+ + +A++ D +I+ + Q+ Sbjct: 608 ------------EGMIGKVYY------PAPGLSDETMPYYVSAYDTDMRKVIDVYAAAQE 649 Query: 866 WIDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 IDQ +L L++ + + L + A+ G+K+ YY+R+ Sbjct: 650 HIDQGMALTLFMRSTLSDKLYEWKKGRTDKMTTRDLTILRHYAFNKGIKSLYYVRT---- 705 Query: 910 SVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T + +N ECE C Sbjct: 706 ----FTDDNQESGVN------------------------ECESC 721 >gi|256844763|ref|ZP_05550245.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus 125-2-CHN] gi|256613111|gb|EEU18318.1| ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus crispatus 125-2-CHN] Length = 674 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 168/708 (23%), Positives = 297/708 (41%), Gaps = 76/708 (10%) Query: 199 ETALIFSSRTLIEKEP-NYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFC 257 ++ + ++ + E NY +E + + + L E Sbjct: 13 DSYISLNALAKFKDEKGNYNFKA--------DKEATKQYLENHIEPRMKKFASL-EEKLA 63 Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSR--IE 315 ++ + + + + + + ++G Y Y L N ++ +E Sbjct: 64 YLVDNDYYDKKVLDLYTAKFIKEIFKLAYAQNFSFLNFMGAAKFYKAYALKTNDNKQFLE 123 Query: 316 MPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLT 374 + R M E+ A+ + S F +TPT N+G + + SC+L Sbjct: 124 RFED---RAVMNALFLADGNEELALNLVKDIISNRFQPATPTFLNAGKKRRGEYISCYLL 180 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 V D++ I A+ + L+K GG+ T +R LGA I S G+IP +K+ D+ Sbjct: 181 RVEDNMESISRAISTSLQLSKRGGGVALCLTNLRELGAPIKKMKNLSSGIIPVMKLLEDS 240 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 NQ G+R+GA YL H + +FLD ++ D++ R ++ IPD+ + Sbjct: 241 FSYANQLGQRQGAGAVYLSAHHPQIMQFLDTKRENADEKVRIKSLSLGVVIPDITFELAK 300 Query: 495 QNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTML 553 +N LFSP D+ YGK E Q ++ + ISA ++ + + Sbjct: 301 ENKKMALFSP---YDIKREYGKPMSDISITKEYQNLLNNPRIKKTFISARKFFQTIAEVQ 357 Query: 554 FETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEET------------AVCN 601 FE+G+P+I ++D N R+PQ+ +G + SNLC+EI ++ CN Sbjct: 358 FESGYPYIMYEDTVNRRNPQKKLGRIVMSNLCSEIAQVNTPSTYNKDLSFNKTGYDVCCN 417 Query: 602 LGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI-DINCHTIEKAKKSNHTHRAIGLGL 660 LGS+N+ A + DKL + +V+ L+ V + +K N +RAIGLG Sbjct: 418 LGSLNIAAAMNSA----DKLGDLVSDSVQALNRVARSSDLDCAPSIEKGNKANRAIGLGA 473 Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720 M L HI Y SPEAVE I++HA S +LA+ GA+ FK S + G Sbjct: 474 MNLHGFLATNHIYYDSPEAVEFTGIFFYTIAYHAFKESNKLAETYGAFKGFKDSSYASGD 533 Query: 721 FPIDSIGLL--------AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATI 772 + I E+ + + ++ W+EL ++K G+ N+N +A+APT +I Sbjct: 534 YFKKFIDEDVSPKTDKIKEIVAKYKLVIPTKEDWEELITKIKKTGIANANLLAVAPTGSI 593 Query: 773 ANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIG 832 + + + S+ P + + V ++ Sbjct: 594 SYLSSCTPSLQPVVAPVETRKEADLGRIYVPAY--------------------------- 626 Query: 833 NIERIPDDLKKIH-ATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 +I D + + A+E+ P +I+ + QK++DQ+ SL L++++ Sbjct: 627 ---KINKDNYEYYEKGAYEVGPNAIIDITAAAQKYVDQSISLTLFVED 671 >gi|24379141|ref|NP_721096.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus mutans UA159] gi|24377046|gb|AAN58402.1|AE014910_6 ribonucleotide reductase, large subunit [Streptococcus mutans UA159] Length = 719 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 164/760 (21%), Positives = 294/760 (38%), Gaps = 110/760 (14%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +K+ K + + + ++A + + +F + L+ DL Sbjct: 32 KEALEAFFKENVKPNTKTFDSITDKIQFLVANDYIEAEFIAKYKSEF-IEQLSQDLHAY- 89 Query: 290 DFAF-EYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 DF F ++ + +Y L N +E + RV E A + + Sbjct: 90 DFQFKSFMAAYKFHQQYALKTNDGEEYLESIED---RVLFNALYFADGNENLAHDLAMEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 + + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 IAQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIMAFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ IPD F + +N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGVTIPDKFYELARRNEDMYLFSPYSIEREYGV-PYNYLDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + +I + I A L ++ + E+G+P++ D N +P G + SNLC Sbjct: 326 DELVANPKIIKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPI--DGKIIMSNLC 382 Query: 586 TEITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 +EI ++E S NL + N +I+ R L V D Sbjct: 383 SEILQVQKPSLINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVTDS 442 Query: 639 -NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 + + K N GLG MG S L HI Y SPE++E D +++ + Sbjct: 443 SHIDAVPSIKNGNKQAHTFGLGAMGLHSYLAQNHIEYGSPESIEFTDIYFMLMNYWTLVE 502 Query: 698 SVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDE 748 S +A+E + + F+ S + G + + + E+ + + W+ Sbjct: 503 SNNIARERQETFVGFEKSKYADGSYFDKYVTGQFIPKSDKIKELFKNHFIPQA--EDWEA 560 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLV 807 L++ V G+ + N +A+AP +I+ I VS SI P + + + G Sbjct: 561 LRQAVIKDGLYHQNRLAVAPNGSISYINDVSASIHPITRRIEERQEKKIGKIYYP----- 615 Query: 808 NELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWI 867 + D + +A+++D +I+ + + + Sbjct: 616 --------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATQHV 649 Query: 868 DQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 DQ SL L++ + + + L + A+ G+K+ YY+R+ Sbjct: 650 DQGMSLTLFMRSDIPQGIYEWKTESKQTTRDLSILRNYAFNKGIKSIYYIRT-------- 701 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T G + N ECE C Sbjct: 702 FTDDGDEVGAN------------------------ECESC 717 >gi|302344178|ref|YP_003808707.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfarculus baarsii DSM 2075] gi|301640791|gb|ADK86113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Desulfarculus baarsii DSM 2075] Length = 604 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 161/669 (24%), Positives = 255/669 (38%), Gaps = 86/669 (12%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGL------ALKETEKEKRAVEFYNLL 346 F ++L RY R E P+ RVA + A F+ L+ Sbjct: 8 FAPEAAELLRRRYLAVGPDGRHESPERMLWRVARAVAAAEERWDGAASAAAMAGRFFELM 67 Query: 347 SSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + F+ ++PTL N+G R QLS+CF+ V D L IF AL++ A++ K GG G D++ Sbjct: 68 AGGLFLPNSPTLINAGRRLGQLSACFVLPVEDSLESIFEALKQAALIHKSGGGTGFDFSR 127 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G + T G S G + F+ V + AV QGG R+GA A L WH D+ EF+ + Sbjct: 128 LRPRGDDVASTRGVSSGPLSFMHVFDVATEAVRQGGVRRGANMASLAAWHPDILEFVTAK 187 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + G R + N + W D FM Q GW L +P Sbjct: 188 QTPG----RLENFNLSLWADDAFMDAAAQGRGWALRNPRH-------------------- 223 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + + A L + +G P + F N +P +G + + N C Sbjct: 224 -------GRTVATLEAAELLEVVARAAHASGEPGMLFGGAINRANPTPALGAIEAVNPCG 276 Query: 587 EITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 E L C LGS+ L D+ L A R LD+V++IN + + Sbjct: 277 EQPLLPY----ESCVLGSLALPRFVRGGDMDWPALEEAAALATRFLDDVLEINRQPLPQV 332 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 +++ R IGLGL+G AL +L + Y S A ++A M ++ A S LA+ RG Sbjct: 333 AEASLRTRKIGLGLLGLADALIMLGLAYDSQPARDLAGRVMARVTAAAREQSAALARRRG 392 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + +F S + MRN+ I Sbjct: 393 DFPAFANS---------------------------------APRAAGAKN-MRNATVSTI 418 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVN-SFLVNELKQRDLWDEAMISDLK 825 APT ++ + G S I+P + Y + G + + L+ L A ++ L Sbjct: 419 APTGALSLLLGWSSGIEPLFALHYHRHMQDGQVLELTCRPFLQRLRALGLDSPANLAAL- 477 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 G ++ +P ++ ATA +I P + + Q+ +D S + L + + Sbjct: 478 RAQGRASAVQGLPAAEARLFATAHQIAPHDHLAMQAACQRHVDNGVSKTINLPSAATVGQ 537 Query: 885 LDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 + I+ QA + LK R +L+ ++ P SC Sbjct: 538 VREIFLQAHALNLKGVTVFRHGCRMEQVL--------RLSPAAEGARVEASGGCETPPSC 589 Query: 945 TSDTECEVC 953 C Sbjct: 590 GFSPASRAC 598 >gi|315194350|gb|EFU24742.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus CGS00] Length = 701 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 44 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 103 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNLMESGKFRDSVHSGMDALTVVSDVAN 445 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689 >gi|289759176|ref|ZP_06518554.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T85] gi|289714740|gb|EFD78752.1| LOW QUALITY PROTEIN: ribonucleotide-diphosphate reductase subunit alpha [Mycobacterium tuberculosis T85] Length = 693 Score = 285 bits (729), Expect = 3e-74, Method: Composition-based stats. Identities = 160/668 (23%), Positives = 271/668 (40%), Gaps = 72/668 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 39 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 98 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 99 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 155 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 156 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 215 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 216 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 275 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 276 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 332 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 333 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 390 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 391 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 445 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 446 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 505 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 506 KYASGEFFDKYTDRIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 565 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 566 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 609 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + + A+EI +I++ + + +DQ SL L+ + + + Sbjct: 610 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRD 654 Query: 885 LDFIYRQA 892 ++ A Sbjct: 655 VNKAQIYA 662 >gi|171779599|ref|ZP_02920555.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281701|gb|EDT47135.1| hypothetical protein STRINF_01436 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 719 Score = 285 bits (729), Expect = 3e-74, Method: Composition-based stats. Identities = 155/709 (21%), Positives = 284/709 (40%), Gaps = 72/709 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + + ++A + + DF + L+ DL+ + Sbjct: 32 KEALKAFFLENVIPNTMTFESITEKIDYLIANDYIEAEFIGKYSPDF-IENLSKDLQAHK 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + RV E+ A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGSQYLESIED---RVLFNALYFADGNEELARDLALEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R + SCFL +V DD+ I ++ L++ GG+G + + Sbjct: 148 NQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNAIGRSINSALQLSRIGGGVGINLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ IPD F + +N LFSP V + + + Y+ Sbjct: 268 KENADEKVRVKTLSLGITIPDKFYELARKNEDMYLFSPYSVEREYGV-PYSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + I + I A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 327 KMVANPNIVKTK-IKARDLETEISKLQQESGYPYVINIDTANRTNPI--DGKIIMSNLCS 383 Query: 587 EITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 E+ ++E S NL + N +I+ R L V D Sbjct: 384 EVLQVQKPSIINDAQEFVKMGTDISCNLGSTNVVNMMTSPDFGRSIKAMTRALTFVSDTS 443 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + ++ K N GLG MG + L HI Y SPE++E + +++ + S Sbjct: 444 SIESVPTIKHGNEQAHTFGLGAMGLHTYLAQNHIHYGSPESIEFTNIYFMLLNYWTLVES 503 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPWDELKK 751 ++A+ER + F+ S + G + I + + S W EL+ Sbjct: 504 NQIARERKQTFVGFEKSKYADGSYFDKYITGDFVPKSDRVKELFAEHFIPSGKDWAELRD 563 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N +A+AP +I+ I VS S+ P Q + + G Sbjct: 564 AVMIDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP-------- 615 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + D + +A+++D +I+ + + +DQ Sbjct: 616 -----------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQG 652 Query: 871 QSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 SL L+L + + + L + A+ GLK+ YY+R+ Sbjct: 653 LSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGLKSIYYIRT 701 >gi|297245178|ref|ZP_06929052.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297177849|gb|EFH37098.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] Length = 721 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 64 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 123 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 124 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 168 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 169 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 228 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 229 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 288 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 289 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 348 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 349 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 405 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 406 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 465 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 466 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 525 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 526 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 585 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 586 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 641 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 642 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 674 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 675 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 709 >gi|77408851|ref|ZP_00785578.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] gi|77172537|gb|EAO75679.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Streptococcus agalactiae COH1] Length = 719 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 159/717 (22%), Positives = 281/717 (39%), Gaps = 88/717 (12%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E LT +K+ + + + ++ + L+ L +++ Sbjct: 32 KEALTAFFKENVQPNSKAFDSITDK-IAYLLKYDYLEEAFLNKYRPEFIEELSTKL-FDK 89 Query: 290 DFAF-EYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLL 346 F F ++ Y +Y L N +E + RV E+ A + + Sbjct: 90 KFRFKSFMAAYKFYQQYALKTNDGEYYLESIED---RVLFNALYFADGDEELATDLALEM 146 Query: 347 SSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWT 405 S + +TP+ N+ +R +L SCFL V DD+ I ++ L++ GG+G + Sbjct: 147 ISQRYQPATPSFLNAGRSRRGELVSCFLIQVTDDMNAIGRSINSALQLSRIGGGVGISLS 206 Query: 406 PVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDL 465 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL Sbjct: 207 NLREAGAPIKGFAGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLDVFHPDIISFLST 266 Query: 466 RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 +K D++ R ++ +PD F + N LFSP + + + + E Y Sbjct: 267 KKENADEKVRVKTLSLGITVPDKFYELARNNQEMYLFSPYSIEREYGV-PFSYIDITEKY 325 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 + I + I+A L ++ + E+G+P+I D N +P G + SNLC Sbjct: 326 DELVANPNITKTK-INARDLETEISKLQQESGYPYIINIDTANRTNPV--DGKIIMSNLC 382 Query: 586 TEI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 +EI CNLGS N+L + +I+T R L Sbjct: 383 SEILQVQKPSLINDAQEYLEMGTDISCNLGSTNVLNMMTSP-----DFGKSIKTMTRALT 437 Query: 634 NVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 V D N + K N GLG MG S L HI Y SPE++E D +++ Sbjct: 438 FVTDSSNIEAVPTIKNGNAQAHTFGLGAMGLHSYLAKNHIEYGSPESIEFTDIYFMLMNY 497 Query: 693 HAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSR 743 + S +A+ER + F+ S + G + + + + + Sbjct: 498 WTLVESNNIARERQTTFVGFEKSKYADGTYFDKYVSGKFVPQSDKVKSLFTNHFIPEA-- 555 Query: 744 LPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVV 802 W+ L+ V G+ + N +A+AP +I+ I S SI P Q + + G Sbjct: 556 KDWENLRYAVMKDGLYHQNRLAVAPNGSISYINDCSASIHPITQRIEERQEKKIGKIYYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 L + + + +A+++D +I+ + Sbjct: 616 ---------ANGLATDTI----------------------PYYTSAYDMDMRKVIDVYAA 644 Query: 863 RQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 + +DQ S+ L+L + + + L + A+ G+K+ YY+R+ Sbjct: 645 ATEHVDQGLSMTLFLRSELPKELYEWKTESKQTTRDLSILRNYAFNKGVKSIYYIRT 701 >gi|88194507|ref|YP_499302.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus NCTC 8325] gi|294849401|ref|ZP_06790144.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|295427308|ref|ZP_06819943.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|87202065|gb|ABD29875.1| ribonucleotide-diphosphate reductase alpha chain, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|294823933|gb|EFG40359.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|295128696|gb|EFG58327.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 721 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 64 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 123 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 124 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 168 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 169 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 228 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 229 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 288 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 289 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 348 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 349 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 405 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 406 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 465 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 466 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 525 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 526 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 585 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 586 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 641 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 642 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 674 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 675 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 709 >gi|73663295|ref|YP_302076.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495810|dbj|BAE19131.1| ribonucleoside-diphosphate reductase alpha chain [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 701 Score = 285 bits (728), Expect = 3e-74, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 285/709 (40%), Gaps = 70/709 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + LE+++ + + + ++ + Y + F +Y E ++ + + F Sbjct: 32 DQEALEVYLEEIQDKTI-YFDTEIERLRYLVDNDFYFDLFAKYSEADLQEITDYAKSIPF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + + K+ +D+A + G + Y H VA+ + Sbjct: 91 EFASYMSASKFFKDYALKTNGKSQYLEDYKQH---------------VAIVALYLANGHK 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 A +F + + + +TPT N+G +L SCFL D L I L+K Sbjct: 136 ATAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEADDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLH--DL 513 H DVEEFLD +K D+ R ++T +P F + + +F+P + + L Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFHMFAPHTIYKEYGLTL 315 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + Y+ + + K A + + ++G+P++ FKD N Sbjct: 316 DDINLDEYYDELVANPNIDKKKK----DAREMLNTIAQTQLQSGYPYLMFKDNANKVHAN 371 Query: 574 QHVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIR 626 +G + SNLCTEI N E + S NL + N + K ++ Sbjct: 372 SDIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESGKFKDSVH 431 Query: 627 TAVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADE 685 T + L V D + +K+N ++GLG+M L I Y S EA + A+ Sbjct: 432 TGMDALTVVSDEADIQNAPGVRKANRELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANI 491 Query: 686 SMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-M 738 +++++I S+E+A+ER Y F+ S + G + +VR + Sbjct: 492 FFMMLNYYSIERSMEIAKERQEVYKDFEQSDYANGKYFEFYTSQTFEPKYEKVRKLFDGL 551 Query: 739 NRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGD 798 + W L+++V+T G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 552 EIPTPEDWKALQEQVETNGLFHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE 611 Query: 799 FTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIE 858 FL + + +AF D M LI+ Sbjct: 612 TFYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLID 640 Query: 859 SASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 641 LISTIQTHIDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|116494954|ref|YP_806688.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei ATCC 334] gi|227535044|ref|ZP_03965093.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631446|ref|ZP_04674477.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105104|gb|ABJ70246.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus casei ATCC 334] gi|227187359|gb|EEI67426.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525911|gb|EEQ64912.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 723 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 160/711 (22%), Positives = 283/711 (39%), Gaps = 74/711 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + L + ++ L L L + Sbjct: 34 KEALQAFLTENVAPNTMQFDSL-ADRLKYLVDNHYYEADFLNKYQPAFLEKLDQFLSAQH 92 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y +Y L + + + F RV E AV+ + + Sbjct: 93 FQFKSFMAAYKYYAQYALKTDDGTQYL-EDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL + DD+ I A+ L++ GG+G + +R Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENYE 526 D++ R ++ +PD + + NA LFSP V +YGK F + Y+ Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVYGKPFSYVDITKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 IK ++ I A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 329 NMVANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385 Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI N+ E + S NL + N ++ VR L V D Sbjct: 386 EIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHS 445 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + NH +IGLG MG + H+ Y SPE+++ + ++++ + AS Sbjct: 446 NIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLKAS 505 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751 ++AQER ++ +F+ S + G + +VR ++ ++ W+ LK Sbjct: 506 NKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKT 565 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N MA+AP +I+ I S S+ P + + G L N+ Sbjct: 566 SVMKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAPDLSND- 624 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A++ID +I+ + Q+ +DQ Sbjct: 625 ------------------------------TMPYYQSAYDIDMRKVIDVYAAAQQHVDQG 654 Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ L++ + + L+ + A G+K+ YY+R+ Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705 >gi|301066518|ref|YP_003788541.1| ribonucleotide reductase subunit alpha [Lactobacillus casei str. Zhang] gi|300438925|gb|ADK18691.1| Ribonucleotide reductase, alpha subunit [Lactobacillus casei str. Zhang] Length = 723 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 160/711 (22%), Positives = 283/711 (39%), Gaps = 74/711 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + L + ++ L L L + Sbjct: 34 KEALQAFLTENVAPNTMQFDSL-ADRLKYLVDNHYYEADFLNKYQPAFLEKLDQFLSAQH 92 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y +Y L + + + F RV E AV+ + + Sbjct: 93 FQFKSFMAAYKYYAQYALKTDDGTQYL-EDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL + DD+ I A+ L++ GG+G + +R Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENYE 526 D++ R ++ +PD + + NA LFSP V +YGK F + Y+ Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVYGKPFSYVDITKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 IK ++ I A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 329 NMVANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385 Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI N+ E + S NL + N ++ VR L V D Sbjct: 386 EIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHS 445 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + NH +IGLG MG + H+ Y SPE+++ + ++++ + AS Sbjct: 446 NIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLKAS 505 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751 ++AQER ++ +F+ S + G + +VR ++ ++ W+ LK Sbjct: 506 NKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKI 565 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N MA+AP +I+ I S S+ P + + G L N+ Sbjct: 566 SVMKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAPDLSND- 624 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A++ID +I+ + Q+ +DQ Sbjct: 625 ------------------------------TMPYYQSAYDIDMRKVIDVYAAAQQHVDQG 654 Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ L++ + + L+ + A G+K+ YY+R+ Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705 >gi|224475872|ref|YP_002633478.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus carnosus subsp. carnosus TM300] gi|222420479|emb|CAL27293.1| ribonuceloside diphosphate reductase alpha chain [Staphylococcus carnosus subsp. carnosus TM300] Length = 698 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 163/707 (23%), Positives = 290/707 (41%), Gaps = 66/707 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + LE++ ++ + ++ + Y + F +Y EE +K + F Sbjct: 29 DQEALAVYLEEI-KDHTIYFDSEIERLHYLVDNDFYVDVFAQYSEEDLKELTDFARSIPF 87 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + + + Y H V + + Sbjct: 88 KFASYMSASKFFKDYALKTNDKKQYLEDYSQH---------------VTIVSLYLADGDK 132 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 ++A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 133 EQARQFISSMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 192 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 193 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 252 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 253 HYDVEEFLDTKKVNADEDIRLSTISTGLIVPAKFFELAKNGEDFYMFAPHTVYNEYGVTL 312 Query: 516 KEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH 575 + + Y+ I +K A + + ++G+P++ FKD N + Sbjct: 313 DD-IDLDKYYDDMVKNPNILKHKK-DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSN 370 Query: 576 VGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTA 628 +G + SNLCTEI N E + S NL + N + K ++ T Sbjct: 371 IGQIKMSNLCTEIFQLQETSVINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHTG 430 Query: 629 VRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 + L V D N +K+N ++GLG+M L I Y S EA + A+ Sbjct: 431 MDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNQIGYESEEAKDFANIFF 490 Query: 688 EFISFHAISASVELAQER-GAYSSFKGSLWDQGVF-----PIDSIGLLAEVRDELA-MNR 740 +++++I S++ A+ER AY F S + G + D + +V+ + Sbjct: 491 MTMNYYSIERSMQTAKERGQAYQDFDKSDYASGKYFEKYTQADIVPEYEKVKSLFEGLEI 550 Query: 741 TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFT 800 + W L+K VK G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 551 PTAEDWKTLEKDVKEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNSETF 610 Query: 801 VVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESA 860 F L + +W + +AF D M LI+ Sbjct: 611 YPMPF----LSPQTMW---------------------------YYKSAFNTDQMRLIDLV 639 Query: 861 SRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + Q+ +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 640 ATIQQHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 686 >gi|197294206|ref|YP_001798747.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma australiense] gi|171853533|emb|CAM11391.1| Ribonucleotide reductase, alpha subunit [Candidatus Phytoplasma australiense] Length = 856 Score = 284 bits (727), Expect = 4e-74, Method: Composition-based stats. Identities = 138/669 (20%), Positives = 265/669 (39%), Gaps = 54/669 (8%) Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRI--EMPQA 319 + + + ++ ++G Y+ Y L + E + Sbjct: 218 NEYYETDFLSQYNEQQIKDIYKIAYQKQFRFSTFMGAFKFYNDYALKSRDKKYYLETYED 277 Query: 320 FFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPD 378 R+ + + A L + F +TPTL N+G +H + SCFL D Sbjct: 278 ---RLCVNALYHAQGDFEIAKRLIKSLINQDFTPATPTLLNAGKKHRGEFVSCFLLEAGD 334 Query: 379 DLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAV 438 L I + + L+K GG+ + T +R G I G G +GV+ K+ + + Sbjct: 335 SLNDIARINEFSMQLSKIGGGVSINITNLRAKGESIKGIKGVCKGVVGVCKLLDHSFRYA 394 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 +Q G+R GA YL +H D+E+FL +K D+ R ++ +P+ ++ +N Sbjct: 395 DQMGQRTGAGAVYLSVFHADIEDFLSTKKLNADEDVRVKTLSLGVIVPNKMIELARKNEV 454 Query: 499 WTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRKMLTMLFETG 557 F P V ++ +Y KV +K I L + M E+G Sbjct: 455 MYTFYPHTVFLEYEKN-FADIAVNMDYWYDILVSNPKVRKKAIQPRQLLELIARMQGESG 513 Query: 558 HPWITFKDPCNIRSPQQ-------HVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH 610 +P++ F D N + + + + T + ++E + S NL + Sbjct: 514 YPYLMFCDNVNQNNTSHLQVKFSNLCTEILQPTITSHYTDYNHTQEDKIGMDVSCNLASG 573 Query: 611 FANNQFDYDKLASTIRTAVRVLDN-VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 +N + + + T+ A+ V++ + N + + K+N +R++G G+MG L Sbjct: 574 HMSNMINNNTIKETVFMAMEVMNTVSMKTNINYVPAVAKANRLNRSVGFGIMGHHGFLAQ 633 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGL 728 +I + S E ++ D I+++++ S + A++ + F+ S + G + + Sbjct: 634 NYIAFGSEENKDLIDVFFNAINYYSLLHSCQKAKKTGQKFYLFEKSHYADGSYFKGRGEI 693 Query: 729 LAE----VRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDP 784 L + + + S W +LKK V+ G+ NS+ +A+AP TI I G + S+ P Sbjct: 694 LPKTDKIKKMFANIPLPSEKDWQQLKKDVQQFGLFNSHRLAVAPNGTIGYIMGTTPSLTP 753 Query: 785 SYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKI 844 Q + ++ + L + + Sbjct: 754 IKQLVEERTYGNSKTYCPMPGLK--------------------------------ETSFM 781 Query: 845 HATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYL 903 + TA++++ LI+ + QK +DQ S L + + + ++L Y A G+KT YY Sbjct: 782 YVTAYKMNKYQLIDVIATAQKHVDQGISFELGITSDITTRELQRYYLYAHHKGIKTLYYT 841 Query: 904 RSRSATSVE 912 R++ E Sbjct: 842 RTQKLKVDE 850 >gi|191638465|ref|YP_001987631.1| ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei BL23] gi|190712767|emb|CAQ66773.1| Ribonucleoside-diphosphate reductase, alpha chain [Lactobacillus casei BL23] gi|327382497|gb|AEA53973.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei LC2W] gi|327385695|gb|AEA57169.1| Ribonucleotide-diphosphate reductase subunit alpha [Lactobacillus casei BD-II] Length = 723 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 160/711 (22%), Positives = 283/711 (39%), Gaps = 74/711 (10%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + L + ++ L L L + Sbjct: 34 KEALQAFLTENVAPNTMQFDSL-ADRLKYLVDNHYYEADFLNKYQPAFLEKLDQFLSAQH 92 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 ++ Y +Y L + + + F RV E AV+ + + Sbjct: 93 FQFKSFMAAYKYYAQYALKTDDGTQYL-EDFKDRVFANALFFADGNEDLAVDLADEMIHQ 151 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TP+ N+G +L SCFL + DD+ I A+ L++ GG+G + +R Sbjct: 152 RYQPATPSFLNAGRARRGELVSCFLLQITDDMNSIGRAINSALELSRIGGGVGLTLSNLR 211 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA I G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K Sbjct: 212 EAGAPIKGIEGAASGVLPVMKLLEDSFSYSNQLGQRQGAGVVYLNVFHPDIISFLGAKKE 271 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE--IAYENYE 526 D++ R ++ +PD + + NA LFSP V +YGK F + Y+ Sbjct: 272 NADEKYRVKTLSLGVVVPDKYYDLIKANADMYLFSPYSV---ERVYGKPFSYVDITKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 IK ++ I A L ++ + E+G+P+I D N +P G + SNLC+ Sbjct: 329 NMVANPAIKKYK-IKARDLENEISKLQQESGYPYIINIDTANRANPI--EGKIIMSNLCS 385 Query: 587 EITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI- 638 EI N+ E + S NL + N ++ VR L V D Sbjct: 386 EIMQVQVPSKLNNKQEYEVLGTDVSCNLGSTNIPNLMHSRDFGRSVEAMVRALTYVTDHS 445 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N + + NH +IGLG MG + H+ Y SPE+++ + ++++ + AS Sbjct: 446 NIDVVPSVQHGNHQAHSIGLGAMGLHTYFAKNHMFYGSPESLDFTNIYFLLLNYYTLRAS 505 Query: 699 VELAQER-GAYSSFKGSLWDQGVFPID-----SIGLLAEVRDELA-MNRTSRLPWDELKK 751 ++AQER ++ +F+ S + G + +VR ++ ++ W+ LK Sbjct: 506 NKIAQERGESFHNFENSKYADGSYFDKYTEQVWAPKYDKVRALFDGIHIPTQADWEALKT 565 Query: 752 RVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNEL 810 V G+ + N MA+AP +I+ I S S+ P + + G L N+ Sbjct: 566 SVMKDGLYHQNRMAVAPNGSISYINDTSASLQPIVNRIEDRQEKKIGTIYYPAPDLSND- 624 Query: 811 KQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQA 870 + +A++ID +I+ + Q+ +DQ Sbjct: 625 ------------------------------TMPYYQSAYDIDMRKVIDVYAAAQQHVDQG 654 Query: 871 QSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRS 905 ++ L++ + + L+ + A G+K+ YY+R+ Sbjct: 655 MAMTLFMRSTIPAGLYPWKDGRTDKMTTRDLNILRNYAHHKGIKSIYYIRT 705 >gi|269202351|ref|YP_003281620.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ED98] gi|262074641|gb|ACY10614.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ED98] Length = 701 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 286/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 44 KDKTILFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSISFNFASYMSASKFFK 103 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 209 ARGEAIKGIKGIAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689 >gi|71403769|ref|XP_804651.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi strain CL Brener] gi|70867734|gb|EAN82800.1| ribonucleoside-diphosphate reductase large chain, putative [Trypanosoma cruzi] Length = 236 Score = 284 bits (726), Expect = 5e-74, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 134/249 (53%), Gaps = 17/249 (6%) Query: 706 GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMA 765 G Y+ F GS QG+ D R+ R WD LKKR+ GMRNS +A Sbjct: 2 GPYARFAGSPASQGLLHFDLWEQKP---------RSGRWYWDALKKRMMKSGMRNSLLLA 52 Query: 766 IAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PTA+ + I G ++ +P N+YV+ +SG+F VVN +LV +L +R LW+E M + + Sbjct: 53 PMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQII 112 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKL 885 ++GS+ NI IP+DLK+++ +EI LIE A R K+IDQ+QSLNL+L+ P+ +L Sbjct: 113 AYNGSVQNIRGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQL 172 Query: 886 DFIYRQAWLMGLKT-TYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSC 944 ++ AW GLKT YYLRS+ A K T+ K + S+ Sbjct: 173 TSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTLK-------GLVKEDDRKQVSSAT 225 Query: 945 TSDTECEVC 953 S+ +C C Sbjct: 226 PSNEDCLNC 234 >gi|294338105|emb|CBJ93943.1| Probable phage ribonucleotide-diphosphate reductase alpha subunit [Campylobacter phage CP220] Length = 898 Score = 284 bits (726), Expect = 6e-74, Method: Composition-based stats. Identities = 151/648 (23%), Positives = 270/648 (41%), Gaps = 51/648 (7%) Query: 143 PKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNMYDGLSESDLETAL 202 + I+ ++G F+++++ + AC L DV ++ + ++DG D++ +L Sbjct: 4 DTIHIVKNNGEREIFDAEKIHKHLHFACQNL-DVDIISIIKDARLKIFDGAKSVDIQDSL 62 Query: 203 IFSSRTLIEKE-PNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIE 261 I S++ I ++ P+Y V R L +KLR+EV K+ E I+ Sbjct: 63 IKSAQEKISEDSPDYELVAGRLLNQKLRKEVYKQYTPLDFKSQVKER-----------IK 111 Query: 262 EGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF 321 +G L+ D +L Y + + YE D Y L +Y +Y + N IE+PQ F Sbjct: 112 KGFYTEDLNA-YSDEELDYFGSLINYELDNELPYSALNQMYSKYLIKHNKKCIEVPQEVF 170 Query: 322 MRVAMGLALKET--EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDD 379 + + M + ++K Y LLS TP + + T + + SC L D Sbjct: 171 ILIPMAIFYNTDIEYRKKYVKLGYELLSQRKISLPTPIMNGARTSYKKFISCNLLNFGDS 230 Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNG-KSQGVIPFLKVANDTAVAV 438 + L+ GLG + + +RGLGA + + G++P +K A+ Sbjct: 231 VESFARGLEAVLKCTSAKSGLGINTSFIRGLGAPVGKPSRLDHTGMLPIVKAIESATSAL 290 Query: 439 NQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAG 498 Q G+ GA + +H ++E F L + G R + I F+++ Sbjct: 291 VQHGRG-GASNLSMPFFHYEIELFSQLGDSKGSLENRARHTDQTIIINKWFLEKALNKED 349 Query: 499 WTLFSPDEVSDLHDL--------YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKML 550 LF + V + K F+ Y++Y + K +KI++ L ++ Sbjct: 350 IFLFHMNAVGNKDPKLDLYDALGDYKRFDELYKHYSAKVPN---KSKKKINSYDLLSLII 406 Query: 551 TMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS--------SEETAVCNL 602 TG +I F D S ++++ + +NLC EI++ S E C L Sbjct: 407 NERMITGRVYIVFADNFVNSSFKENL---YMTNLCCEISVPSHSLDNYRGIPGELGTCIL 463 Query: 603 GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMG 662 G+IN + VR LDN+IDI+ + + + S R +G+G+ Sbjct: 464 GNINFGHSKE------SDIPKVADFLVRFLDNMIDISDFAMPEIEYSATKRRTLGIGVSN 517 Query: 663 FQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFP 722 L + Y + EA E ++ ME F+ + S++LA+ERGA + S + F Sbjct: 518 LFGYLAKSKLFYNTKEAREHINDLMELFYFNLVKTSIDLAKERGACELYNESFYSDNKFI 577 Query: 723 IDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTA 770 + + + ++L W+ L++ + GMR+S+ A+ P Sbjct: 578 FERY-----LEAGIKPEFKTKLDWESLREELSKYGMRHSSLSAVPPAG 620 Score = 65.3 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 41/143 (28%) Query: 772 IANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSI 831 + + I+P + + +K+ S + F Sbjct: 768 SSKPSSATPGIEPPRELVTIKTEKSSTVKQLVPFYKTA---------------------- 805 Query: 832 GNIERIPDDLKKIHATAF--EIDPMWLIESASRRQKWIDQAQSLNLYLD-----EPSGKK 884 KK + TA+ + + ++ S Q+++DQ+ S N Y + + + + Sbjct: 806 ----------KKYYTTAWGVDFNNKDYLKLVSTIQRYVDQSISTNQYYNIVETKKVNIED 855 Query: 885 LDFIYRQAWLMGLKTTYY--LRS 905 + + + + +G+K+ YY R+ Sbjct: 856 VIEEFIECFNLGVKSLYYANFRT 878 >gi|89901782|ref|YP_524253.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] gi|89346519|gb|ABD70722.1| ribonucleotide reductase large subunit [Rhodoferax ferrireducens T118] Length = 589 Score = 284 bits (725), Expect = 6e-74, Method: Composition-based stats. Identities = 145/622 (23%), Positives = 243/622 (39%), Gaps = 66/622 (10%) Query: 299 QILYDRYFLHINGSRIEMPQA-FFMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTP 356 + RY GS E + RVA+ ++ E + F +LS + F+ Sbjct: 13 HVWRTRYLWAEPGSVPEPAIENTWARVALAVSGAEPHHQNDWRERFLAMLSDWRFLPGGR 72 Query: 357 TLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 L +GT L +C + D + GIF AL+E + G +G D++ +R A Sbjct: 73 ILAGAGTSRRVTLFNCLAMGPIEDSVQGIFNALREAMQCLQAGGAIGIDFSTLRPALALA 132 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 + + G + F+ V + G +R+ A+ A L H D+E F+D + +TG Sbjct: 133 QSSGAVASGPVSFMNVWQAANAVLEAGNRRRSAMLATLRCDHPDIEAFIDAKLDTGA--- 189 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSP---DEVSDLHDLYGKEFEIAYENYERQADR 531 + + D FM+ + ++ W L P + ++ + + Sbjct: 190 -LSHFKLSVLLNDEFMQALQEDGPWPLVFPLGEHPIPVGGEVCERVWSDGGPPQLCM--- 245 Query: 532 GEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLN 591 V R++ A ALW K+L +G P + F D N + + + +N + L Sbjct: 246 ----VHRRVPARALWEKLLQAQHASGEPGVLFIDRINRANNLWYDEHLTVANPDGGVPLP 301 Query: 592 SSSEETAVCNLGSINLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646 CNLGSINL D L + A R LD+V DI+ ++ Sbjct: 302 P----WGACNLGSINLSRFVQQPFAAHPSVDLGGLRAVAAVATRFLDDVYDISLFPLKAQ 357 Query: 647 KKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERG 706 +KS R IGLG+ G L +L + Y S ++++ E M I A SVELAQE+G Sbjct: 358 QKSALASRRIGLGVTGLADMLAMLGLRYGSAASIDLTREIMGAIRDTAYRTSVELAQEKG 417 Query: 707 AYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 A+ + + G P L ++R L+ + G+RNS+ +A+ Sbjct: 418 AFPACDKLKY--GASPF-----------VLELDRA-------LQDAIAQHGIRNSHLLAV 457 Query: 767 APTATIANICGV-SQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 APT +I+ + S I+P ++ + V F V + R Sbjct: 458 APTESISLLANNVSNGIEPMRAFQAMRRVRGAEGQAVF-FDVEDAACRQY---------- 506 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKK 884 + K A ++ ++ + Q +D A S +YL S + Sbjct: 507 ------QALHGPDAPWPKHFVQAADVSAEDQLQLMAAVQSHVDNALSKTVYLPASASVQD 560 Query: 885 LDFIYRQAWLMGLKTTYYLRSR 906 + + +QAW +GLK R Sbjct: 561 VGLVLQQAWELGLKGCSVERQG 582 >gi|163784573|ref|ZP_02179422.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159880159|gb|EDP73814.1| ribonucleotide-diphosphate reductase alpha subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 592 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 158/445 (35%), Positives = 239/445 (53%), Gaps = 26/445 (5%) Query: 147 IMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKIVLSETYKNM----YDGLSESDLETAL 202 ++ DGT F K+L + G+ + + K + + ++ +L+ + Sbjct: 5 VVKRDGTEEKFQMKKLINAIFALFEGMDLPDDWEIAFKIAKELDLKIPERVTTEELDFLV 64 Query: 203 IFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEE 262 + + LI Y + +R L + + R++ + F +E Sbjct: 65 LKAIEQLIPTHYIYDTLASRQLQKIINRKIDKRF-----------------KSFKEALEY 107 Query: 263 GVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-INGSRIEMPQAFF 321 GVK L E +++FDL + N + YERD +Y G+ L DRYF NG IE PQ FF Sbjct: 108 GVKEGLYKEDILNFDLEKIENAIDYERDNLLDYFGMTTLKDRYFTKDRNGEIIEKPQWFF 167 Query: 322 MRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLY 381 MRVA+G+ E E ++ YN +S ++ STPTL+NSGT Q SSC++ + D L Sbjct: 168 MRVALGIGNNEDE----VIKVYNKISKLEYLHSTPTLYNSGTITHQYSSCYVNVIDDSLE 223 Query: 382 GIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG 441 I +E A LAKY+GG+G D T +R G+ I N KS GVIPF+K+ + A+ QG Sbjct: 224 SIMDKAKETAFLAKYAGGVGTDVTRIRATGSAIKSLNAKSSGVIPFIKIFDTIVNAIQQG 283 Query: 442 GKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTL 501 G+R+ + YL+ WH+D++ FLDLR+ TG+ RT +NTA W+PD M+R+ + L Sbjct: 284 GRRRSSQVMYLQPWHLDIDAFLDLRETTGNPYFRTPSLNTAIWMPDEIMRRIKEGEPLYL 343 Query: 502 FSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWI 561 F P E +L +GK+F Y +A+ GEIK+++KI + +R+ L L +TGHPW+ Sbjct: 344 FDPAECPELVASWGKDFTEKYFECIEKAETGEIKLWKKIDSQEWFRRYLFKLAKTGHPWL 403 Query: 562 TFKDPCNIRSPQQHVGVVHSSNLCT 586 TFKD N +P GV++SSNLC Sbjct: 404 TFKDRHNEHNPCPEYGVINSSNLCV 428 >gi|304381651|ref|ZP_07364300.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304339754|gb|EFM05699.1| ribonucleotide-diphosphate reductase subunit alpha [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 701 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 161/695 (23%), Positives = 285/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y Y E + + + F+ + K+ + Sbjct: 44 KDKTIFFDTEIERLRYLVDNDFYFNVLDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 103 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 104 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 148 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 149 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 208 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 209 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 268 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 269 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 328 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 329 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 385 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 386 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 445 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 446 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 505 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 506 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 565 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 566 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 621 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF D M LI+ + Q IDQ S Sbjct: 622 QTMW---------------------------YYKSAFNTDQMKLIDLIATIQTHIDQGIS 654 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 655 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 689 >gi|306833074|ref|ZP_07466205.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus bovis ATCC 700338] gi|304424783|gb|EFM27918.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus bovis ATCC 700338] Length = 719 Score = 284 bits (725), Expect = 7e-74, Method: Composition-based stats. Identities = 152/714 (21%), Positives = 283/714 (39%), Gaps = 82/714 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ + + + +++ +++ DF + +A DL+ + Sbjct: 32 KEALKAFFRENVIPYSMTFDTIIDKINYLIDNDYIESEFINKYTPDF-IETVAKDLQAQG 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + R+ E+ A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGKHYLESIED---RILFNALYFADGNEELARDLATEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R + SCFL +V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGV-PYSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + I + I A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 327 KMVANPNIVKTK-IRARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383 Query: 587 EITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E+ + CNLGS N++ + +I+ R L Sbjct: 384 EVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSP-----DFGRSIKAMTRALTF 438 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N GLG MG + L HI Y SPE++E + +++ Sbjct: 439 VSDTSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYW 498 Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746 + S +A+ER + F+ S + G + I + + S W Sbjct: 499 TLVESNHIARERKQTFVGFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 +L+ V T G+ + N +A+AP +I+ I VS S+ P Q + + G Sbjct: 559 AKLRDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP--- 615 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + D + +A+++D +I+ + + Sbjct: 616 ----------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATE 647 Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 648 HVDQGLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|75758222|ref|ZP_00738347.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494276|gb|EAO57367.1| Ribonucleoside-diphosphate reductase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 694 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 157/671 (23%), Positives = 285/671 (42%), Gaps = 53/671 (7%) Query: 258 RYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMP 317 +Y+ E + + ++ + + Y+ Y Y L + +I + Sbjct: 49 KYLIEHNYYYNVFGEYTEEEVQRIYEAAYTHKFEFQSYMAATKFYKDYSLRSDDKKIYLE 108 Query: 318 QAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTV 376 R A+ + K+A+ + N + ++ +TPT NSG +L SCFL + Sbjct: 109 DYE-DRAAIVALYLASGNTKKALRYVNQIMKQNYQPATPTYLNSGKARAGELVSCFLLEM 167 Query: 377 PDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAV 436 D L I L L+K GG+ + + +RG I G + GV+P +K+ D+ Sbjct: 168 DDSLNSINYNLSVAKQLSKIGGGIAINLSKLRGRTEAIKGIENAASGVLPVMKLMEDSFS 227 Query: 437 AVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQN 496 +NQ G+R GA AYL +H D+ EFLD +K D++ R ++ P F + QN Sbjct: 228 YINQLGQRPGAGAAYLNIFHWDLIEFLDSKKVNADEKTRIQSLSIGLVTPRKFFQLAEQN 287 Query: 497 AGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFET 556 LF+P V + ++ + ++ + E A+ K ++A + K+ T+ E+ Sbjct: 288 KEMYLFAPATVYKAYGVHLDDMDLDEKYDELVANPMVRKRKLDLTAREMLVKIATIQLES 347 Query: 557 GHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG-------SINLLA 609 G+P+ K N + P + +G V SNLCTEI + N+ S L + Sbjct: 348 GYPYFMNKTNANEQHPLKDLGGVKMSNLCTEIFQYMETSVINDYNIADWIKNDISCVLGS 407 Query: 610 HFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALH 668 N + + + T + +L +V D KK+N T ++GLG M L Sbjct: 408 LNIVNVMENKDVKEAVHTGMEMLTDVTDKSCIENAPGVKKANATLHSVGLGTMNLHGFLA 467 Query: 669 LLHIPYASPEAVEIADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI- 726 IPY S +A + A +++H+I S E+A+ERG ++ F+ S + +G + + Sbjct: 468 KNFIPYESEDAKDFARVFFAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLT 527 Query: 727 -------GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVS 779 + ++ + + + T+ W+ L K+V+ G+ +S +AIAP + + + Sbjct: 528 TEFLPQSEKVKKLFEGIQIPTTA--DWERLMKQVQRDGLYHSYRLAIAPNQSSGYVQNAT 585 Query: 780 QSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPD 839 S+ P + +S + L ++ + Sbjct: 586 PSVMPIVDKVETRSTDKATTYYPMPY----LSKQTFFS---------------------- 619 Query: 840 DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLK 898 + +A+E+D M +I+ + Q +DQ S L++ S + L Y A GLK Sbjct: 620 -----YKSAYEMDQMKVIDLIAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLK 674 Query: 899 TTYYLRSRSAT 909 + YY R+ ++T Sbjct: 675 SLYYTRTSNST 685 >gi|325977863|ref|YP_004287579.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177791|emb|CBZ47835.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 719 Score = 283 bits (724), Expect = 9e-74, Method: Composition-based stats. Identities = 154/714 (21%), Positives = 283/714 (39%), Gaps = 82/714 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L +++ + + + +++ + + DF + LA DL+ + Sbjct: 32 KEALRAFFRENVIPNSMAFDTIIDKINYLIDNDYIESEFISKYTPDF-IESLAKDLQAQG 90 Query: 290 DFAFEYLGLQILYDRYFLHINGSRI--EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N + E + R+ E+ A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGKYYLESIKD---RILFNALYFADGNEELARDLATEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + +TP+ N+ +R + SCFL +V DD+ I ++ L++ GG+G + Sbjct: 148 HQRYQPATPSFLNAGRSRRGEFVSCFLISVTDDMNSIGRSINSALQLSRIGGGVGISLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDIMAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + + Y+ Sbjct: 268 KENADEKIRVKTLSLGITVPDKFYELARNNEEMYLFSPYSVEREYGV-PYSYVDITAEYD 326 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 + I + I A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 327 KMVANPNIVKTK-IRARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383 Query: 587 EITLNSS------------SEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E+ + CNLGS N++ + +I+ R L Sbjct: 384 EVLQVQTPSVINDAQEFVKMGTDISCNLGSTNVVNMMTSP-----DFGRSIKAMTRALTF 438 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + + K N GLG MG + L HI Y SPE++E + +++ Sbjct: 439 VSDTSSIEAVPTIKHGNEQAHTFGLGAMGLHTFLAQHHIHYGSPESIEFTNIYFMLMNYW 498 Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746 + S +A+ER + SF+ S + G + I + + S W Sbjct: 499 TLVESNHIARERKQTFVSFENSKYADGSYFDKYITGEFVPKSDRVKELFAEHFIPSGEDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 +L+ V T G+ + N +A+AP +I+ I VS S+ P Q + + G Sbjct: 559 AKLRDAVMTDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP--- 615 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + D + +A+++D +I+ + + Sbjct: 616 ----------------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATE 647 Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 648 HVDQGLSLTLFLRSDIPQGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|196230496|ref|ZP_03129358.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chthoniobacter flavus Ellin428] gi|196225426|gb|EDY19934.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Chthoniobacter flavus Ellin428] Length = 1043 Score = 283 bits (724), Expect = 1e-73, Method: Composition-based stats. Identities = 132/652 (20%), Positives = 237/652 (36%), Gaps = 72/652 (11%) Query: 342 FYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 FYN + + +PQ S+CF+ +V D++ I AML KY G G Sbjct: 182 FYNHKTGQ------AQRAATQYEYPQGSACFIQSVDDNMEDIMRLAMSEAMLFKYGSGTG 235 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVE 460 +D + +R + G G+ G + FLKV + A V GGK R+ A L+ WH D+E Sbjct: 236 SDLSTLRSTREKLSG-GGRPSGPLSFLKVYDQVANVVKSGGKTRRAAKMNTLKDWHPDIE 294 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIP-DLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE 519 EF++ + + D + + QN ++ DE + + + Sbjct: 295 EFIEAKTKEEKKAWALIEQGYDGSYNGDAYGSIMYQNENLSVRVSDEFMNAAVEGKEWWT 354 Query: 520 IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVV 579 + K K A AL RK+ G P + F + + G Sbjct: 355 KR---------VTDGKPCEKKEAKALLRKIAEGTHLCGDPGVQFDTTIDKWHTCKGTGRQ 405 Query: 580 HSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN-QFDYDKLASTIRTAVRVLDNVIDI 638 +S+N C+E + CNL S+NLL + FD ++ + +R + + ++D Sbjct: 406 NSTNPCSEYLF----LDNTACNLASLNLLKFKKADGGFDVERFKAAVRVFITAQEIIVDN 461 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 + I++ +++H R +GLG + + + Y + E +A ++ HA S Sbjct: 462 ASYPIKEIAENSHIFRTLGLGYANLGALIMSYGLGYDTDEGRALAGAITSIMTGHAYEQS 521 Query: 699 VELAQERGAYSSFKGSLWDQGVFPID------SIGLLAEVRDEL----------AMNRTS 742 +LA+ G + +K + +D + ++ R + + + Sbjct: 522 AKLAKTMGPFPGYKDTRASGVKKTVDSTNESYMLEVIDLHRSHVSRIQDSDRFGYLKEEA 581 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFT 800 + WD + K G RN+ +APT TI + + I+P + Y G Sbjct: 582 QKCWDGALAQGKKHGYRNAQVTVLAPTGTIGFLMDCDTTGIEPDIALVKYKLLAGGGMLK 641 Query: 801 VVNSFLVNELKQRDLWDEAM------------ISDLKYHDGSIGNIERIPDDLKKIHATA 848 +VN + L+ + I D+ DG+ + + + A Sbjct: 642 IVNQTVKPALQNLGYSFAEIEGVVAHIDKFDTIEDVTDEDGTTIP-SGLKPEHLPVFDCA 700 Query: 849 F-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTT 900 F + I + Q ++ A S + L E + + + Y + W +GLK Sbjct: 701 FKPHRGSRSLHYRGHIRMMAAAQPFLSGAISKTVNLPEEATVEDIVNTYVEGWQLGLKAI 760 Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEV 952 R S S LN D ++ + + E Sbjct: 761 AIYRDGSKRSA----------PLNVKKTKDMGTAEAVSDVDAVLNDKRTLEA 802 >gi|289551412|ref|YP_003472316.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315658920|ref|ZP_07911787.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis M23590] gi|289180943|gb|ADC88188.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus lugdunensis HKU09-01] gi|315496044|gb|EFU84372.1| ribonucleoside-diphosphate reductase [Staphylococcus lugdunensis M23590] Length = 701 Score = 283 bits (724), Expect = 1e-73, Method: Composition-based stats. Identities = 166/705 (23%), Positives = 290/705 (41%), Gaps = 63/705 (8%) Query: 229 RREVLTTVYKKPQKATHHEMQCLYPE--YFCRYIEEGVKARLLH------ESMMDFDLVY 280 R+E +K Q+A ++ ++ + YF IE + + DL Sbjct: 21 RKESGFFNLEKDQEALKVYLEEIHDKTIYFDDEIERLHYLVDHDFYFNVFDKYSEIDLRE 80 Query: 281 LANDLKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKR 338 + + K Y+ Y Y L N +E VA+ LA + + Sbjct: 81 ITDFAKSIEFNFASYMSASKFYKDYALKTNDKSQYLEDYNQHVTIVALYLA---NGNKAQ 137 Query: 339 AVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYS 397 A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 138 AKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIG 197 Query: 398 GGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHI 457 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL +H Sbjct: 198 GGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFHY 257 Query: 458 DVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKE 517 DVEEFLD +K D+ R ++T +P F + + +F+P V + + + Sbjct: 258 DVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDD 317 Query: 518 FEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG 577 ++ + A+ IK + A + + ++G+P++ FKD N ++G Sbjct: 318 IDLEQYYDDMVANPNIIKKKK--DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANSNIG 375 Query: 578 VVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVR 630 + SNLCTEI N + + S NL + N + K ++ T + Sbjct: 376 QIKMSNLCTEIFQLQETSIINDYGIDDEIKRDISCNLGSLNIVNVMETGKFRDSVFTGMD 435 Query: 631 VLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEF 689 L V D N +K+N ++GLG+M I Y S EA + A+ Sbjct: 436 ALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYFAKNKIGYESEEAKDFANVFFMM 495 Query: 690 ISFHAISASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTS 742 ++++++ S+++A+ERG Y F+ S + G + D A+V+ + + Sbjct: 496 MNYYSLERSMQIAKERGQVYQDFEQSDYANGKYFSFYTAQDITPRFAKVQQLFEGIEIPT 555 Query: 743 RLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVV 802 W L+++V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 556 AEDWKALQQQVEAHGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYP 615 Query: 803 NSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASR 862 FL + + +AF D M LI+ + Sbjct: 616 MPFL-------------------------------SPETMWYYKSAFNTDQMKLIDLIAT 644 Query: 863 RQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 Q IDQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 645 IQTHIDQGISTILYVNSEISTRELSRLYVYAHYKGLKSLYYTRNK 689 >gi|323227179|gb|EGA11353.1| ribonucleotide-diphosphate reductase subunit alpha [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 674 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 168/668 (25%), Positives = 276/668 (41%), Gaps = 72/668 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E + EG + ++ L +LG Y Y L +G Sbjct: 51 HERLETLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTFLGAWKFYTSYTLKTFDG 110 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + VA+ LA + E A + + + S F +TPT N G + +L Sbjct: 111 KRYLEHFEDRVTMVALTLAQGD---ETLATQLTDEMLSGRFQPATPTFLNCGKQQRGELV 167 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL + D++ I A+ L+K GG+ + +R GA I +S GVIP +K Sbjct: 168 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMK 227 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 228 MLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDIT 287 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +NA LFSP +V YGK F + + V + I+A ++ Sbjct: 288 FRLAKENAQMALFSPYDVQ---RRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQT 344 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G ++ SNLC+EI + Sbjct: 345 LAEIQFESGYPYIMFEDTVNRANPI--AGRINMSNLCSEILQVNSASRYDDNLDYTHIGH 402 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRA 655 CNLGS+N+ D + T+ TA+R L V D+ + ++ N A Sbjct: 403 DISCNLGSLNIAHV-----MDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHA 457 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGS 714 IGLG M L I Y SPEA++ + I++HA+ S+ LA+ER ++ F S Sbjct: 458 IGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERGKTFAGFAQS 517 Query: 715 LWDQGVF-----PIDSIGLLAEVRDELA---MNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G + D A+VR A + +R W +L+ V G+ N N A+ Sbjct: 518 RYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAV 577 Query: 767 APTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ +G F+ N Sbjct: 578 PPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTN----------------- 620 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKK 884 + ++ A++I P +I++ + + +DQ SL L+ + + + Sbjct: 621 --------------ENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRD 666 Query: 885 LDFIYRQA 892 ++ A Sbjct: 667 INKAQIYA 674 >gi|314936970|ref|ZP_07844317.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis subsp. hominis C80] gi|313655589|gb|EFS19334.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis subsp. hominis C80] Length = 713 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 164/701 (23%), Positives = 284/701 (40%), Gaps = 56/701 (7%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 L ++ + + E ++ + + + DL+ + Sbjct: 38 FFNLEKDQEALNVYLEEISDKTIYFDSEIERLHYLVDNHFYFNVF-KKYSEEDLIEIIEF 96 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 K Y+ Y Y L N +E VA+ LA +++A +F Sbjct: 97 AKSINFEFASYMSASKFYKDYALKTNDKSKYLEDYNQHVAIVALYLA---DGNKEQAKQF 153 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 + + +TPT N+G +L SCFL V D L I L+K GG+ Sbjct: 154 ILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVA 213 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G G ++GV+P K +Q G+R GA YL +H DVEE Sbjct: 214 INLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEE 273 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D+ R ++T +P F + + +F+P V + + + +I Sbjct: 274 FLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDDIDIE 333 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E A+ +K + A + + ++G+P++ FKD N ++G + Sbjct: 334 KYYDELVANPNVLKKKK--DAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKM 391 Query: 582 SNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 SNLCTEI N E + S NL + N + K ++ T + L Sbjct: 392 SNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMETGKFRDSVHTGMDALTV 451 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D N KK+N+ ++GLG+M L I Y S EA + A+ ++++ Sbjct: 452 VSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYY 511 Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPW 746 +I S+E+A+ER AY F S + G + + + +V++ M + W Sbjct: 512 SIERSMEIAKERGEAYQDFDKSDYASGKYFDFYTSQEFVPQFEKVKELFANMQIPTSEDW 571 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+++V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + FL Sbjct: 572 KSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL 631 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + +AF D M LI+ S Q Sbjct: 632 -------------------------------SPETMWYYKSAFNTDQMKLIDLISTIQTH 660 Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 661 VDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 701 >gi|330683859|gb|EGG95633.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus epidermidis VCU121] Length = 701 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 161/708 (22%), Positives = 283/708 (39%), Gaps = 68/708 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + ++ + Y F +Y + + + ++F Sbjct: 32 DQEALKVYLEEIHDKTI-YFDSEIERLHYLVDNNFYFNVFAKYSDSDLVEITEYAKSINF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + Q + Y H VA+ + Sbjct: 91 QFASYMSASKFYKDYALKTNDKQQYLEDYNQH---------------VAIVSMYLANGDK 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 +A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 DQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 516 KEFE-IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + + Y + E K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNVEKKKK---DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANS 372 Query: 575 HVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 +G + SNLCTEI N E + S NL + N + K ++ T Sbjct: 373 DIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESQKFRDSVHT 432 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 433 GMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIF 492 Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMNR 740 +++++I S+++A+ER Y F S + G + + +VR+ Sbjct: 493 FMMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEFYTSQEFEPQFEKVRELFKGFE 552 Query: 741 T-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W L+K V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 553 IPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAET 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 FL + + +AF D M LI+ Sbjct: 613 FYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLIDL 641 Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 642 VSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|228475303|ref|ZP_04060027.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis SK119] gi|228270679|gb|EEK12093.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus hominis SK119] Length = 701 Score = 282 bits (722), Expect = 2e-73, Method: Composition-based stats. Identities = 164/701 (23%), Positives = 284/701 (40%), Gaps = 56/701 (7%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 L ++ + + E ++ + + + DL+ + Sbjct: 26 FFNLEKDQEALNVYLEEISDKTIYFDSEIERLHYLVDNHFYFNVF-KKYSEEDLIEIIEF 84 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEF 342 K Y+ Y Y L N +E VA+ LA +++A +F Sbjct: 85 AKSINFEFASYMSASKFYKDYALKTNDKSKYLEDYNQHVAIVALYLA---DGNKEQAKQF 141 Query: 343 YNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLG 401 + + +TPT N+G +L SCFL V D L I L+K GG+ Sbjct: 142 ILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVA 201 Query: 402 NDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEE 461 + + +R G I G G ++GV+P K +Q G+R GA YL +H DVEE Sbjct: 202 INLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEE 261 Query: 462 FLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 FLD +K D+ R ++T +P F + + +F+P V + + + +I Sbjct: 262 FLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDDIDIE 321 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E A+ +K + A + + ++G+P++ FKD N ++G + Sbjct: 322 KYYDELVANPNVLKKKK--DAREMLNMIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKM 379 Query: 582 SNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 SNLCTEI N E + S NL + N + K ++ T + L Sbjct: 380 SNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMETGKFRDSVHTGMDALTV 439 Query: 635 VID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D N KK+N+ ++GLG+M L I Y S EA + A+ ++++ Sbjct: 440 VSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNYY 499 Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDEL-AMNRTSRLPW 746 +I S+E+A+ER AY F S + G + + + +V++ M + W Sbjct: 500 SIERSMEIAKERGEAYQDFDKSDYASGKYFDFYKSQEFVPQFEKVKELFANMQIPTSEDW 559 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFL 806 L+++V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + FL Sbjct: 560 KSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFL 619 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 + + +AF D M LI+ S Q Sbjct: 620 -------------------------------SPETMWYYKSAFNTDQMKLIDLISTIQTH 648 Query: 867 IDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 649 VDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|149375056|ref|ZP_01892829.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola DG893] gi|149360945|gb|EDM49396.1| Ribonucleotide reductase, alpha subunit [Marinobacter algicola DG893] Length = 699 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 128/648 (19%), Positives = 255/648 (39%), Gaps = 58/648 (8%) Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE-TEKEKRAVEFYNLLSSFHFMC 353 + L + ++ +A + RVA LA E + + + + Sbjct: 9 WNSKYQLKTKTGEPVDKDI----EATYERVATALAEVENKANRAKHKKEFVWALRHGAIP 64 Query: 354 STPTLFNSGTRHPQL----SSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + N+G + +C ++ +V D + I E + K G+G +++ +R Sbjct: 65 AGRITSNAGAEAHKPATSTINCTVSGSVQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLR 124 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 GA++ G + G + F+ + + V+ G R+GA A + H DV +F+ ++ Sbjct: 125 PRGAYVAGAGATTSGPLSFMDIFDRMCFTVSSAGGRRGAQMATFDVHHPDVIDFIQAKR- 183 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPD----------EVSDLHDLYGKEF 518 + R N + I + F++ V W L P ++SD ++F Sbjct: 184 ---EDGRLRQFNLSLLITEDFIEAVRNGDDWHLSFPVTEKEVEDEGLDLSDTTQFVYRDF 240 Query: 519 EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV 578 I + +++R + A +W ++T ++ P D N + Sbjct: 241 PIQKGYVVNGEGKVACRIYRTLKAQFIWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCED 300 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFD-----YDKLASTIRTAVRVLD 633 + ++N C E L C LGS+NL D Y+K + R+LD Sbjct: 301 IRATNPCGEQPLPPY----GSCLLGSVNLTMFVDYPFTDKASFNYEKYRKVVGIFTRMLD 356 Query: 634 NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 NV++IN +E+ + R G+G++G S L +L +PY S E+V+ +E + ++ Sbjct: 357 NVVEINGLPLEEQRHEITYKRRHGMGILGLGSTLAMLRMPYGSSESVQFTEEVVREMAVE 416 Query: 694 AISASVELAQERGAYSSFKG----SLWDQGVFP---IDSIGLLAEVRDELAMNRTSRLPW 746 S+ LA+E+G + P D L +++ ++ + S+ Sbjct: 417 GWRQSLALAEEKGPAPIMDDEFEVTPKMLTKCPQLSQDGYKLGDKLKGKVLHAKYSKYMQ 476 Query: 747 ------DELKKRVKTIGMRNSNCMAIAPTATIANIC--GVSQSIDPSYQNLYVKSNMSGD 798 EL +++ G R ++ +IAPT TI+ S I+PS+ + Y ++ + Sbjct: 477 QIAGVEPELIEQLAEKGGRFTHHTSIAPTGTISLSLANNASNGIEPSFSHHYARNII--- 533 Query: 799 FTVVNSFLVNELKQRDLWDEAMI-SDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLI 857 ++ D++ ++ + G++ E L + T+ ++ P + Sbjct: 534 -----REGRKTKEKVDVFSFELLAYRHLVNPGAMPFSEEEDKRLPQYFTTSEDVTPAQHV 588 Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLR 904 + + Q W+D + S + + + IY A+ GLK R Sbjct: 589 DIQAAAQLWVDSSISKTANVPQDFAYPDFKDIYMYAYDKGLKGCTTFR 636 >gi|227431270|ref|ZP_03913324.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353032|gb|EEJ43204.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 723 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 164/765 (21%), Positives = 287/765 (37%), Gaps = 123/765 (16%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 P +Q F + R + + L L E Sbjct: 38 NAFLDENVLPNVMHFDSLQERLDWMF----DHRFLEREFIQKYNLTFIEKLYTYLAGEHF 93 Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++ Y++Y L N IE + RVAM E A+ + + Sbjct: 94 KFKSFMAAFKFYNQYALKTNDGAYYIETYED---RVAMNALYYADGNENLALRLADEMIH 150 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + V Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNV 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G + + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K Sbjct: 211 REAGAPVMGIDNAAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD F V QN LFSPD+V ++ + Y+ Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQ-PFNYVDITAEYDN 329 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +I+ R I A +L ++ + E+G+P+I D N +P G + SSNLC+E Sbjct: 330 MVANDKIRKQR-IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSE 386 Query: 588 ------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNV 635 + CNLGSIN++ + + ++ T VR L V Sbjct: 387 ILQVQTPSEIDNEQHYTKLGSDISCNLGSINIVN-----MMNTNDFGGSVDTMVRALTFV 441 Query: 636 IDINC-HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 D + + N AIGLG MG + + Y E+++ +++++ Sbjct: 442 SDSSNLDVVPSIDLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEESLDFTSTFFMMLNYYS 501 Query: 695 ISASVELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLP 745 I +S+ +A+E + F S + G + + +A+ + + Sbjct: 502 IKSSMGIAKERHETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVP--TEQD 559 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNS 804 W +LK+ V GM N+ AIAPT +I+ + + S+ P + + M G Sbjct: 560 WAQLKEDVAKYGMYNAYRHAIAPTGSISYVNDATASLLPIVNKIEERQEGMIGKVYYPAP 619 Query: 805 FLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQ 864 L +E M + +A++ D +I+ + Q Sbjct: 620 ---------GLSNETM----------------------PYYVSAYDTDMRRVIDVYAAAQ 648 Query: 865 KWIDQAQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 + IDQ +L L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 649 EHIDQGMALTLFMRSTLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT--- 705 Query: 909 TSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T + +N ECE C Sbjct: 706 -----FTDDNQESGVN------------------------ECESC 721 >gi|83647576|ref|YP_436011.1| ribonucleotide reductase subunit alpha [Hahella chejuensis KCTC 2396] gi|83635619|gb|ABC31586.1| Ribonucleotide reductase, alpha subunit [Hahella chejuensis KCTC 2396] Length = 712 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 121/622 (19%), Positives = 247/622 (39%), Gaps = 54/622 (8%) Query: 321 FMRVAMGLALKETEKEKRAVEF-YNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT- 374 + RVA L+ E + + V + + + + N+G + +C ++ Sbjct: 44 YERVAKALSSVEADSIREKVLADFVWALENGAIPAGRIMSNAGAEEHKPATSTINCTVSG 103 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 ++ D + I E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 104 SIMDSMDDILLKNHEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDKM 163 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV +F+ ++ + R N + I + F+K V Sbjct: 164 CFTVSSAGGRRGAQMATFDVHHPDVFDFVRAKR----EDGRLRQFNLSLLITEDFIKAVQ 219 Query: 495 QNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 + W P +V+D ++F + ++ R +++R + A + Sbjct: 220 NDEDWRFSFPITRKEAEEDNIDVNDETQYLYRDFPVKDGYMTDESGRVVCRIYRTVKARS 279 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W ++T ++ P D N + + ++N C E L C LGS Sbjct: 280 IWDAIMTSTYDFAEPGFILIDKVNEMNNNWFCENIRATNPCGEQPLPPY----GSCLLGS 335 Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL F++DK + R+LDNV++IN +E + R G+G Sbjct: 336 VNLTKFVEYPFTENAKFNFDKYRKVVAIFTRMLDNVVEINGLPLEGQRHEIQYKRRHGMG 395 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWD-- 717 ++G S L +L +PY S E+V +E ++ +ELA+E+G + + Sbjct: 396 ILGLGSTLAMLRMPYGSDESVSFTEEVCREMALEGWRQGLELAKEKGPAPIMEDTFIVTE 455 Query: 718 -----QGVFPIDSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAI 766 + D + +++ ++ + SR +L + G R ++ +I Sbjct: 456 EMLRLRPEMAKDGLKAGDKLKGKVLHAKYSRYMQRVAEADPKLVDALAKKGARFTHHTSI 515 Query: 767 APTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDL 824 APT TI+ S I+PS+ + Y ++ + ++ D++ +++ Sbjct: 516 APTGTISLSLANNASNGIEPSFAHHYSRNVI--------RQGKKTKEKMDVFSYELLAYR 567 Query: 825 KYHDGSIGNIERIPD-DLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + + L T+ ++ P ++ + Q W+D + S + + Sbjct: 568 HLVNPKAMPFSEDAEAQLPAYFTTSDDVTPKQHVDIQAAAQLWVDSSISKTANVPTDFPY 627 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + IY A+ GLK R Sbjct: 628 GEFKDIYMYAYEKGLKGCTTFR 649 >gi|116617383|ref|YP_817754.1| ribonucleotide-diphosphate reductase subunit alpha [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096230|gb|ABJ61381.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 723 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 164/760 (21%), Positives = 285/760 (37%), Gaps = 113/760 (14%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 P +Q F + R + + L L E Sbjct: 38 NAFLDENVLPNVMHFDSLQERLDWMF----DHRFLEREFIQKYNITFIEKLYTYLAGEHF 93 Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++ Y++Y L N IE + RVAM E A+ + + Sbjct: 94 KFKSFMAAFKFYNQYALKTNDGAYYIETYED---RVAMNALYYADGNENLALRLADEMIH 150 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + V Sbjct: 151 QRYQPATPSFLNAGRARRGELVSCFIIQTSDDMNSIGRTINSALQLSKMGGGVGINLSNV 210 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R GA + G + + GV+P +K+ D+ +Q G R+GA YL +H D+ FL +K Sbjct: 211 REAGAPVMGIDNAAGGVVPIMKLLEDSFTFSSQVGARQGAGVVYLSVFHPDILSFLSTKK 270 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D++ R ++ +PD F V QN LFSPD+V ++ + Y+ Sbjct: 271 ENADEKIRVKTLSLGLTVPDKFYDLVKQNETMYLFSPDDVEKVYQQ-PFNYVDITAEYDN 329 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 +I+ R I A +L ++ + E+G+P+I D N +P G + SSNLC+E Sbjct: 330 MVANDKIRKQR-IDARSLEEEISKLQQESGYPYIINIDTANRTNPVP--GKIVSSNLCSE 386 Query: 588 ITLNSSSEETAVCNL-------GSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINC 640 I + E S NL + N + + ++ T VR L V D + Sbjct: 387 ILQVQTPSEIDNEQHYTKLGSDISCNLGSINIVNMMNTNDFGGSVDTMVRALTFVSDSSN 446 Query: 641 -HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 + N AIGLG MG + + Y EA++ +++++I +S+ Sbjct: 447 LDVVPSIDLGNKEKHAIGLGAMGLAAYFAQNKMYYGDEEALDFTSTFFMMLNYYSIKSSM 506 Query: 700 ELAQE-RGAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELK 750 +A+E + F S + G + + +A+ + + W +LK Sbjct: 507 GIAKERHETFYQFDQSGYADGTYFDKYVEKNWTPKTEKVAKAFAGFDVP--TEQDWAQLK 564 Query: 751 KRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNE 809 + V GM N+ AIAPT +I+ + + S+ P + + M G Sbjct: 565 EDVAKYGMYNAYRHAIAPTGSISYVNDATASLLPIVNKIEERQEGMIGKVYYPAP----- 619 Query: 810 LKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQ 869 L +E M + +A++ D +I+ + Q+ IDQ Sbjct: 620 ----GLSNETM----------------------PYYVSAYDTDMRRVIDVYAAAQEHIDQ 653 Query: 870 AQSLNLYL----------------DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEK 913 +L L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 654 GMALTLFMRSTLPEHLYEWKNNRTNKMTTRDLTILRNYAFNKGIKSLYYVRT-------- 705 Query: 914 STLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVC 953 T + +N ECE C Sbjct: 706 FTDDNQESGVN------------------------ECESC 721 >gi|91791016|ref|YP_551967.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] gi|91700896|gb|ABE47069.1| ribonucleotide reductase large subunit [Polaromonas sp. JS666] Length = 784 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 150/702 (21%), Positives = 256/702 (36%), Gaps = 110/702 (15%) Query: 286 KYERDFAFE-YLGLQILYDRYFLHINGSRIEM-PQAFFMRVAMGLALKETEKEKRAVEFY 343 D LQ L L + E + RVA LA + + + F Sbjct: 1 MKTNDSNLSVPQALQQLCYDVLLEKYAAPGESSVREIQERVATSLA----DDKAQQARFV 56 Query: 344 NLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDL--------YGIFGALQENAMLA 394 + + F+ +G + +CF+ V D + GI AL+E+A Sbjct: 57 S-AQAGGFVPGGRINSAAGMDRVSTMINCFVQPVGDSMSGSNQDGQPGIMDALRESAETM 115 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLET 454 + GG+G D++ +R +GA + GT+ K+ G + +++V + V G R+GA + Sbjct: 116 RRGGGVGYDFSSIRPVGARVKGTDSKASGPVSYMRVFDRMCQTVESAGARRGAQMGVMRV 175 Query: 455 WHIDVEEFLDLRKNTG---------------DDRRRTH--------------DMNTANWI 485 H D+E F+D +K D R+ + N + + Sbjct: 176 DHPDIEMFIDAKKTPDFSQMGLDKKDADGLLDLVRKNQGFGWSLRSAFATLSNFNISVAV 235 Query: 486 PDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIK-VFRKISAVA 544 D FM V ++ + L E + + G+ + V+R + A+ Sbjct: 236 TDEFMNAVVNDSDFDLVHDAEPVE-------------ACPTKVCTDGKARFVYRTVKAIE 282 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W K++ + P + F D N + ++ V+ ++N C E TL C LGS Sbjct: 283 IWTKIMRNTYYGAEPGVLFIDRINQDNNLRYCEVIKATNPCGEQTLPPY----GCCCLGS 338 Query: 605 INLLAHFANNQ-----FDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 NL +N FD+D L+ + AV +LD V+D + + R IGLG Sbjct: 339 PNLTRFVSNPFTLMASFDFDGLSKVVAKAVEMLDKVLDKTHWPLPQQASEAANKRRIGLG 398 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQG 719 G A+ +L I Y S + + A E + A ASV LA+ GA+ F + Sbjct: 399 HFGLADAMAMLGIRYDSQQGADFAAHVSEVLRDSAYMASVNLAKTLGAFPFFDAEKY--- 455 Query: 720 VFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-- 777 L + +++K ++ G+RNS+ ++IAPT TI+ G Sbjct: 456 ----------------LEEGTFASRLPEKIKDAIRMYGIRNSHLLSIAPTGTISMAFGDN 499 Query: 778 VSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERI 837 S I+P + + N + + +Q ++ K G Sbjct: 500 ASSGIEPIFSLRQQR----------NKMMADGSRQIFELEDYAYRQFKLSKG-------- 541 Query: 838 PDDLK-KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895 +D K + TA ++ + +ID A S + + + + +Y AW M Sbjct: 542 -EDAKSDVFVTAMQMTVADHLRVLGAVAPYIDSAISKTVNVPADYPFEDFQQVYMDAWRM 600 Query: 896 GLKTTYYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHS 937 GLK R + D K D Sbjct: 601 GLKGITTYRPNDMIGAVLVSADDADKKAAVATEQDLRQDDPD 642 >gi|239636655|ref|ZP_04677657.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus warneri L37603] gi|239598010|gb|EEQ80505.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus warneri L37603] Length = 701 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 161/708 (22%), Positives = 283/708 (39%), Gaps = 68/708 (9%) Query: 217 AKVTARFLLEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDF 276 + + LE++ + + + ++ + Y F +Y + + + ++F Sbjct: 32 DQEALKVYLEEIHDKTI-YFDSEIERLHYLVDNNFYFNVFEKYSDSDLVEITEYAKSINF 90 Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKE 336 + K+ +D+A + Q + Y H VA+ + Sbjct: 91 QFASYMSASKFYKDYALKTNDKQQYLEDYNQH---------------VAIVSMYLANGDK 135 Query: 337 KRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAK 395 +A +F + + + +TPT N+G +L SCFL V D L I L+K Sbjct: 136 DQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSK 195 Query: 396 YSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETW 455 GG+ + + +R G I G G ++GV+P K +Q G+R GA YL + Sbjct: 196 IGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIF 255 Query: 456 HIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYG 515 H DVEEFLD +K D+ R ++T +P F + + +F+P V + + Sbjct: 256 HYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTL 315 Query: 516 KEFE-IAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQ 574 + + Y + E K A + + ++G+P++ FKD N Sbjct: 316 DDIDLEKYYDDMVANPNVEKKKK---DAREMLNTIAQTQLQSGYPYLMFKDNANKVHANS 372 Query: 575 HVGVVHSSNLCTEITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRT 627 +G + SNLCTEI N E + S NL + N + K ++ T Sbjct: 373 DIGQIKMSNLCTEIFQLQETSIINDYGTEDEIKRDISCNLGSLNIVNVMESQKFRDSVHT 432 Query: 628 AVRVLDNVID-INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADES 686 + L V D N KK+N ++GLG+M L I Y S EA + A+ Sbjct: 433 GMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIF 492 Query: 687 MEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMNR 740 +++++I S+++A+ER Y F S + G + + +VR+ Sbjct: 493 FMMMNYYSIERSMQIAKERGEKYLDFDKSDYANGKYFEFYTSQEFEPQFEKVRELFKGFE 552 Query: 741 T-SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDF 799 + W L+K V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + Sbjct: 553 IPTAEDWKALQKDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAET 612 Query: 800 TVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIES 859 FL + + +AF D M LI+ Sbjct: 613 FYPMPFL-------------------------------SPETMWYYKSAFNTDQMKLIDL 641 Query: 860 ASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 S Q +DQ S LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 642 VSTIQTHVDQGISTILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|329575045|gb|EGG56597.1| ribonucleoside-diphosphate reductase, alpha subunit [Enterococcus faecalis TX1467] Length = 591 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 142/608 (23%), Positives = 249/608 (40%), Gaps = 66/608 (10%) Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGAL 387 E+ A+ + + + +TP+ N+ R +L SCFL V DD+ I + Sbjct: 1 MYFADGDEELALTLADEMIHQRYQPATPSFLNAGRKRRGELVSCFLVQVTDDMNSIGRSF 60 Query: 388 QENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGA 447 L++ GG+G + +R GA I G +G + GV+P +K+ D+ NQ G+R+GA Sbjct: 61 NSALQLSRIGGGVGITLSNLREAGAPIKGYDGAASGVVPVMKLFEDSFSYSNQLGQRQGA 120 Query: 448 VCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEV 507 YL +H D+E FL +K D++ R ++ +PD F + N LFSP V Sbjct: 121 GVVYLNVFHPDIEMFLSAKKENADEKIRVKTLSLGVIVPDKFYELTRNNEDMYLFSPYSV 180 Query: 508 SDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPC 567 + + +I E A+ K RKI A L ++ E+G+P+I D Sbjct: 181 EREYGVPYSYVDITKEYDNLVANPNIRK--RKIKARDLENEISKSQQESGYPYIINIDTA 238 Query: 568 NIRSPQQHVGVVHSSNLCTEITLNS------SSEETAVCNLG-SINLLAHFANNQFDYDK 620 N +P G + SNLC+EI +E V S NL + N + Sbjct: 239 NKNNPI--DGKIIMSNLCSEILQVQTPSVINGKQEYEVLGTDISCNLGSTNIVNLMESPD 296 Query: 621 LASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEA 679 ++R R L V D + + N IGLG MG + H+ Y S E+ Sbjct: 297 FGKSVRAMTRALTFVTDASEIDVVPTIQNGNRLSHTIGLGAMGLHTFFAKNHMEYGSEES 356 Query: 680 VEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFPIDSIGLLAEVRDE--- 735 ++ D +++ + S ++A+ER + + + S + G + I + + Sbjct: 357 LDFTDIYFMLLNYWTLMESNQIAKERNQVFHNLEKSDYASGAYFDKYIEGNFTPKFDKVK 416 Query: 736 ---LAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK 792 + + W L+ VK G+ + N +A+AP +I+ I S SI P + + + Sbjct: 417 EIFKDIQIPTAEDWAALRDAVKKDGLYHQNRLAVAPNGSISYINDTSASIHPITRMIEER 476 Query: 793 -SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEI 851 G +L N+ + +A+++ Sbjct: 477 QEKKIGKIYYPAPYLANDTI-------------------------------PYYTSAYDM 505 Query: 852 DPMWLIESASRRQKWIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGL 897 D +I+ + Q+ +DQ SL L++ + + + L+ + A+ G+ Sbjct: 506 DMRKVIDVYATAQQHVDQGMSLTLFMRSEIPEGLYEWKETPKQTTRDLNILRHYAFNKGI 565 Query: 898 KTTYYLRS 905 K+ YY+R+ Sbjct: 566 KSIYYIRT 573 >gi|290889637|ref|ZP_06552727.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429] gi|290480835|gb|EFD89469.1| hypothetical protein AWRIB429_0117 [Oenococcus oeni AWRIB429] Length = 723 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 151/723 (20%), Positives = 288/723 (39%), Gaps = 82/723 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E K+ + L E F ++ L + + L + L Sbjct: 34 KEARDAFLKENVEPNRLRFSSL-KERFDWLVKNNFVESQLVKKYDFTFIEKLYDFLDAVH 92 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y + + +E + R+ + +K A+ + + Sbjct: 93 FQFQSFMAAYKFYTQYAIKTDDGNYYVESYED---RITVNALYYADGDQKLAMRIADEMI 149 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + Sbjct: 150 HQRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 VR GA + G + GV+P +K+ D +Q G R+GA AYL +H DV FL + Sbjct: 210 VREAGASVMGLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + + LFSP +V ++ + + + Y+ Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGV-PFNYVDLTKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 EIK + + A L ++ + E+G+P++ D N +P G V +SNLC+ Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPVY--GKVVTSNLCS 385 Query: 587 E------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E + CNLGSIN+ + D+ K T+ A+ + Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMM--HTADFGKSVETMTRALTFVSE 443 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 DI+ + + N AIGLG MG + L I Y A++ + +++ Sbjct: 444 SSDIS--VVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYYT 501 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747 + AS ++A+ER ++ F+ S + G + D +V+ + + W Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDYHVPTIEDWQ 561 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806 LK+ V G+ N+ A+APT +I+ + + S+ P + + M+G Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEARAEGMTGRVFYP---- 617 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 L +E + + +A+++D +I++ + Q+ Sbjct: 618 -----ANGLSNETL----------------------PYYVSAYDLDQRKVIDTYAAAQEH 650 Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DQ ++ L++ + + L + A+ G+K+ YY+R+ + + Sbjct: 651 VDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTDDN 710 Query: 911 VEK 913 E+ Sbjct: 711 TEQ 713 >gi|116490255|ref|YP_809799.1| ribonucleotide-diphosphate reductase subunit alpha [Oenococcus oeni PSU-1] gi|116090980|gb|ABJ56134.1| ribonucleoside-diphosphate reductase class Ib alpha subunit [Oenococcus oeni PSU-1] Length = 723 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 150/723 (20%), Positives = 287/723 (39%), Gaps = 82/723 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E K+ + L E F ++ L + + L + L Sbjct: 34 KEARDAFLKENVEPNRLRFSSL-KERFDWLVKNNFVESQLVKKYDFTFIEKLYDFLDAVH 92 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y + + +E + R+ + +K A+ + + Sbjct: 93 FQFQSFMAAYKFYTQYAIKTDDGNYYVESYED---RITVNALYYADGDQKLAMRIADEMI 149 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + Sbjct: 150 HQRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 VR GA + + GV+P +K+ D +Q G R+GA AYL +H DV FL + Sbjct: 210 VREAGASVMRLANMAGGVVPIMKLMEDAFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + + LFSP +V ++ + + + Y+ Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGV-PFNYVDLTKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 EIK + + A L ++ + E+G+P++ D N +P G V +SNLC+ Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPVY--GKVVTSNLCS 385 Query: 587 E------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E + CNLGSIN+ + D+ K T+ A+ + Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMM--HTADFGKSVETMTRALTFVSE 443 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 DI+ + + N AIGLG MG + L I Y A++ + +++ Sbjct: 444 SSDIS--VVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVALDFVNTFFLMTNYYT 501 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747 + AS ++A+ER ++ F+ S + G + D +V+ + + W Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLVKDWGPKTDKVKKLFSDYHVPTIEDWQ 561 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806 LK+ V G+ N+ A+APT +I+ + + S+ P + + M+G Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEARAEGMTGRVFYP---- 617 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 L +E + + +A+++D +I++ + Q+ Sbjct: 618 -----ANGLSNETL----------------------PYYVSAYDLDQRKVIDTYAAAQEH 650 Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DQ ++ L++ + + L + A+ G+K+ YY+R+ + + Sbjct: 651 VDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYHQGIKSIYYIRTFTDDN 710 Query: 911 VEK 913 E+ Sbjct: 711 TEQ 713 >gi|229543872|ref|ZP_04432931.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacillus coagulans 36D1] gi|229325011|gb|EEN90687.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Bacillus coagulans 36D1] Length = 852 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 155/742 (20%), Positives = 276/742 (37%), Gaps = 123/742 (16%) Query: 277 DLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFF-----MRVAMGL--- 328 D ++ E D+ IE P + R A GL Sbjct: 86 DWEKNEAEVLIEEDYRQALEHPDERETGVIKRSLD-IIEKPLEVYYEQIAKRNATGLAAV 144 Query: 329 ALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTT-VPDDLYGIFGA 386 E ++ + +FYN L + +F+ + L+ +G+ +C++ VPD GI Sbjct: 145 EKTEEKRNEWFEKFYNELVNLNFIPAGRVLYGAGSETEVTYFNCYVMPFVPDSREGISEH 204 Query: 387 LQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKG 446 ++ + GG+G + + +R G NGKS G + +L V QGG R+G Sbjct: 205 RKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGGSRRG 264 Query: 447 AVCAYLETWHIDVEEFLDLRKNTG------------------------------DDRRRT 476 A L WH D+ EF+ + +R+ Sbjct: 265 AQMIMLAVWHPDIVEFIISKMQNPRILRFLIENTNDEWIRKLAHDKLKFTPLSEMERQMY 324 Query: 477 HDMNTANWIP------DLFMKRVTQN----AGWTLFSP----------------DEVSDL 510 H + IP + MK + +T+ +P E + Sbjct: 325 HGIVNYKHIPGQGGFTEEVMKEAEEKLETGGHYTVHNPEFLTGANISVCLTKEFMEAVEQ 384 Query: 511 HDLYGKEF--------EIAYENYERQADRGE----------IKVFRKISAVALWRKMLTM 552 + +F E E G+ ++V+RKI A LW + Sbjct: 385 DAEFELKFPDVENYSEEEMRIYNEEWHKIGDVREWEKLGRKVRVYRKIKAKELWNLINIC 444 Query: 553 LFETGHPWITFKDPCNIRSP-QQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHF 611 + P + F D N + + + V ++N C E L +VCNL ++NL Sbjct: 445 ATYSAEPGVFFIDNANDMTNAKAYGQKVVATNPCGEQPLAPY----SVCNLAAVNLAKMV 500 Query: 612 ANNQFD--YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHL 669 + +D+L T+RT VR+ DNVID + +++ KK R +GLG+MG L Sbjct: 501 DKETKEVRWDQLKQTVRTGVRMQDNVIDATPYFLKENKKQALGERRVGLGVMGLADLLIY 560 Query: 670 LHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLL 729 + Y S E ++ D+ E I+ A AS+E+A+E+G++ G ++ Sbjct: 561 MEKEYGSEEGNKLVDKVFETIATEAYRASIEIAKEKGSFPFLTG----------ETEEET 610 Query: 730 AEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNL 789 +R + ++++K + G+RNS+ + +APT + + GVS ++P + Sbjct: 611 NRLRHAFTETGYMKNMPEDIRKAILKHGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFS 670 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAF 849 Y +S G F VN+ +V E + + D L TA Sbjct: 671 YFRSGRLGKFIEVNADIVQEYLDKHPETDK-------------------DHLPNWFVTAM 711 Query: 850 EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSA 908 ++ P + Q+W+D + S + + ++++ +Y + + G K S Sbjct: 712 DLAPEAHADVQCVIQRWVDSSISKTVNAPRGYTVEQVEKVYERLYKGGAKGGTVYVDGSR 771 Query: 909 TSVEKSTLKGVDGKLNAVPVTD 930 + TLK + + + Sbjct: 772 -DSQVLTLKAEEPQEEKREKAE 792 >gi|329769049|ref|ZP_08260471.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] gi|328839540|gb|EGF89116.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] Length = 696 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 164/691 (23%), Positives = 287/691 (41%), Gaps = 69/691 (9%) Query: 235 TVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFE 294 + ++ + + Y F +YIE+ + L + F+ K+ +D+A + Sbjct: 44 KFSSEIKRLRYLVEENYYYNIFDKYIEDEIVECLELAANYKFEFKSYMAASKFYKDYALK 103 Query: 295 YLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCS 354 + + Y Q F+ VAM LA A E + + Sbjct: 104 TNDKKQYLENY-----------NQHVFI-VAMYLA---DGNVSLAKELMISMLEQRVQPA 148 Query: 355 TPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAH 413 TPT NS +R +L SCFL V D L I L+K GG+ + + +R G Sbjct: 149 TPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGVAINLSKLRARGES 208 Query: 414 IHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDR 473 I G G ++GVIP K +Q G+R GA YL +H DV EFLD +K D+ Sbjct: 209 IKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVLEFLDTKKVNADEE 268 Query: 474 RRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGE 533 R ++T +P LF +N + +F P + + + L + ++A E + Sbjct: 269 LRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDLAKYYDEFVVNENI 328 Query: 534 IKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSS 593 +K RK +A + + ++G+P++ FKD N + +G V SNLCTEI Sbjct: 329 MK--RKYNARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVKMSNLCTEIFQLQE 386 Query: 594 SEETAVCNLG-------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEK 645 + G S NL + N + K+ +I + + L V D Sbjct: 387 TSVIKDYGEGDIIKRDISCNLASLNIVNVMESKKVKESIYSGMDALTFVSDSTKIKNAPG 446 Query: 646 AKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQER 705 K+N ++GLG M L I Y S EA + A+ ++++ + S+++A++R Sbjct: 447 VVKANEEFHSVGLGAMNLNGYLAKNCIAYDSEEAKDFANVFFMMMNYYTLERSMQIAKQR 506 Query: 706 -GAYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVKTI 756 ++ F+ S + G + I + E+ + + + ++ W LK R+K Sbjct: 507 GQSFKDFEKSDYYNGSYFAKYIEKDYLPKSDKVKELFEGIYIP--TKEDWHSLKNRIKEN 564 Query: 757 GMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLW 816 G+ ++ MAIAPT +I+ + + S+ P + ++ + + +L Sbjct: 565 GLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRTYGNAETFYPMPYL---------- 614 Query: 817 DEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLY 876 + + +AF +D M LI+ S Q+ +DQ S+ LY Sbjct: 615 ---------------------SPKTQWYYKSAFTMDQMKLIDLMSVIQEHVDQGISVILY 653 Query: 877 LD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 ++ + + ++L Y A GLK+ YY R++ Sbjct: 654 VNSDITTRELARYYIYAHHKGLKSLYYTRNK 684 >gi|325284718|ref|YP_004264181.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus proteolyticus MRP] gi|324316207|gb|ADY27321.1| ribonucleoside-diphosphate reductase, alpha subunit [Deinococcus proteolyticus MRP] Length = 695 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 169/708 (23%), Positives = 292/708 (41%), Gaps = 65/708 (9%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 +V P H+++ E E GV L E ++ + N + Sbjct: 27 QVYFQEKVNPNTVFFHDLK----EKIRYMTENGVWDASLFERYSYDEVQQVFNRAYGYKF 82 Query: 291 FAFEYLGLQILYDRY--FLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 ++G Y Y +E + A+ + + A+E + L + Sbjct: 83 RFKSFMGAYKFYSEYATMTPDRSRWLERYEDRMSITALARSSN----VEEALELVHHLVN 138 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLT-TVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TPTL NSG + +L SCFL D+L I L A L+K GG+G + + Sbjct: 139 QTFTPATPTLMNSGKANTGRLVSCFLLQDCTDNLNSITKTLSFVAELSKGGGGIGVEVSN 198 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R G + G ++GV+ K+ ++ +Q G+R GA YL H D + L + Sbjct: 199 LRARGESLRGIQNVTKGVMGVAKMLDNMLRYADQAGQRPGAGAIYLSVMHADFMDVLSAK 258 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D+ R ++ IPD+FM++V F P + G+EF N E Sbjct: 259 KIASDEDSRLKTLSVGATIPDIFMQKVRSGEDIYQFYP---YSIEQETGREFTSIDWNEE 315 Query: 527 RQADRGEIKVF-RKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLC 585 QA ++ +++SA ++ + E+G+P++ F+ N +P +VG + SNLC Sbjct: 316 YQALADNPRIRKKRVSARRVFEDIAITQGESGYPYLLFEGNANRANPIPNVGKILMSNLC 375 Query: 586 TEITLNSSSEETAVC---------NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVI 636 +EI + S NL + + + A+R+LD+V Sbjct: 376 SEILQPTRPSYFHPYGEEHKDRIGLDVSCNLSSLVIEQTMRSGDMGRVVGAAIRMLDDVA 435 Query: 637 -DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAI 695 + + K++N R+IGLG MG S L + Y S EA++ D + +HA Sbjct: 436 RSTSVTEVPAVKRANDEMRSIGLGAMGLHSFLAKNELIYGSEEALDFVDTFFAAVHYHAR 495 Query: 696 SASVELAQERGA-YSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDE 748 AS+E+A++ G ++ F+GS + G + D AEV ++ W + Sbjct: 496 KASMEIARDTGFVFAGFEGSRYADGSYFEQYLAKDFTPKTAEVAALFEGHTLPTKEDWAQ 555 Query: 749 LKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN 808 L + ++ G+ +S MAIAPT +I+ + S SI P + + +++ L Sbjct: 556 LVRDIQQHGLAHSFVMAIAPTGSISYVSHASASIMPITEKVETRTSNKARTIYPMPHLNV 615 Query: 809 ELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 + + + A+++D ++++ + Q+ +D Sbjct: 616 DTE-------------------------------WYYEEAYDMDMNRVLDTVATAQRHVD 644 Query: 869 QAQSLNLYLDEP-SGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKST 915 Q S L++ S + L Y QA+L G+KT YY R R T E T Sbjct: 645 QGISCTLFVPGTCSTRDLQRYYIQAYLKGVKTLYYTRMRKTTIEECLT 692 >gi|118586507|ref|ZP_01543951.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus oeni ATCC BAA-1163] gi|118433071|gb|EAV39793.1| ribonucleoside-diphosphate reductase 2, alpha subunit [Oenococcus oeni ATCC BAA-1163] Length = 723 Score = 281 bits (719), Expect = 4e-73, Method: Composition-based stats. Identities = 150/723 (20%), Positives = 288/723 (39%), Gaps = 82/723 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E K+ + L E F ++ L + + L + L Sbjct: 34 KEARDAFLKENVEPNRLLFSSL-KERFDWLVKNNFVESQLVKKYDFTFIEKLYDFLDAVH 92 Query: 290 DFAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y + + +E + R+ + +K A+ + + Sbjct: 93 FQFQSFMAAYKFYTQYAIKTDDGNYYVESYED---RITVNALYYADGDQKLAMRIADEMI 149 Query: 348 SFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 F +TP+ N+G +L SCF+ DD+ I + L+K GG+G + + Sbjct: 150 HQRFQPATPSFLNAGRARRGELVSCFVLQTTDDMNSIGRVINSAMQLSKIGGGVGINLSN 209 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 VR GA + G + GV+P +K+ D +Q G R+GA AYL +H DV FL + Sbjct: 210 VREAGASVMGLANMAGGVVPIMKLMEDVFTYSSQAGARQGAGVAYLSVFHPDVMSFLSTK 269 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + + LFSP +V ++ + + + Y+ Sbjct: 270 KENADEKIRVKTLSLGLTVPDKFYELTEKGKQMALFSPADVEKVYGV-PFNYVDLTKEYD 328 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 EIK + + A L ++ + E+G+P++ D N +P G V +SNLC+ Sbjct: 329 NMVANDEIKK-QWVDARNLEMEISKLQQESGYPFVINLDIVNRANPVY--GKVVTSNLCS 385 Query: 587 E------------ITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E + CNLGSIN+ + D+ K T+ A+ + Sbjct: 386 EILQTQTISRINNEQEYTQLGADISCNLGSINIDNMM--HTADFGKSVETMTRALTFVSE 443 Query: 635 VIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHA 694 DI+ + + N AIGLG MG + L I Y +++ + +++ Sbjct: 444 SSDIS--VVPSVQNGNRQKHAIGLGAMGLAAFLAKNKIYYGDEVSLDFVNTFFLMTNYYT 501 Query: 695 ISASVELAQER-GAYSSFKGSLWDQGVFPI-----DSIGLLAEVRDEL-AMNRTSRLPWD 747 + AS ++A+ER ++ F+ S + G + D +V+ + + W Sbjct: 502 LLASNQIAKERGESFFEFEKSDYANGKYFDKYLAKDWGPKTDKVKKLFSDYHVPTIEDWQ 561 Query: 748 ELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFL 806 LK+ V G+ N+ A+APT +I+ + + S+ P + + M+G Sbjct: 562 RLKEMVAKYGLYNAYRQAVAPTGSISYVNDTTASLQPIVSRVEARAEGMTGRVFYP---- 617 Query: 807 VNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKW 866 L +E + + +A+++D +I++ + Q+ Sbjct: 618 -----ANGLSNETL----------------------PYYVSAYDLDQRKVIDTYAAAQEH 650 Query: 867 IDQAQSLNLYLDEP----------------SGKKLDFIYRQAWLMGLKTTYYLRSRSATS 910 +DQ ++ L++ + + L + A+ G+K+ YY+R+ + + Sbjct: 651 VDQGLAMTLFMRSTIPEGIYDWKDGDTDKMTTRDLTILRHYAYNQGIKSIYYIRTFTDDN 710 Query: 911 VEK 913 E+ Sbjct: 711 TEQ 713 >gi|311694338|gb|ADP97211.1| ribonucleotide-diphosphate reductase subunit alpha [marine bacterium HP15] Length = 714 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 127/622 (20%), Positives = 251/622 (40%), Gaps = 54/622 (8%) Query: 321 FMRVAMGLALKETEKEK-RAVEFYNLLSSFHFMCSTPTLFNSGTRHPQL----SSCFLT- 374 + RVA LA E + + + ++ + + + N+G + +C ++ Sbjct: 46 YERVAKALAEVENKSVRTQHMKNFIWALQNGAIPAGRITSNAGAEAHKPATSTINCTVSG 105 Query: 375 TVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDT 434 TV D + I E + K G+G +++ +R GA++ G + G + F+ + + Sbjct: 106 TVQDSMNDILEKNHEAGLTLKAGCGIGYEFSTLRPKGAYVAGAGATTSGPLSFMDIFDRM 165 Query: 435 AVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVT 494 V+ G R+GA A + H DV +F+ ++ + R N + I + F++ V Sbjct: 166 CFTVSSAGGRRGAQMATFDVHHPDVIDFIQAKR----EDGRLRQFNLSLLITEDFIEAVR 221 Query: 495 QNAGWTLFSPD----------EVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVA 544 +A W L P ++SD ++F + +++R + A Sbjct: 222 NDADWHLSFPVTKKEVEDEKLDLSDESQFVYRDFPEQKGYVVNGEGKVACRIYRTLKAQF 281 Query: 545 LWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGS 604 +W ++T ++ P D N + + ++N C E L C LGS Sbjct: 282 IWDTIMTSTYDYAEPGFILIDKVNQMNNNWFCEDIRATNPCGEQPLPPY----GSCLLGS 337 Query: 605 INLLAHFANNQFD-----YDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLG 659 +NL D Y+K + R+LDNV++IN + + + R G+G Sbjct: 338 VNLTMFVDYPFTDKASFNYEKYRKVVAIFTRMLDNVVEINGLPLAEQRHEITYKRRHGMG 397 Query: 660 LMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSF----KGSL 715 ++G S L +L +PY S E+V+ +E + ++ S+ LA+E+G + + Sbjct: 398 ILGLGSTLAMLRMPYGSEESVQFTEEVVREMAVEGWRQSLALAEEKGVAPIMDDEFEITP 457 Query: 716 WDQGVFPI---DSIGLLAEVRDELAMNRTSRLPW------DELKKRVKTIGMRNSNCMAI 766 P D L +V+ + + S+ +L + + G R ++ +I Sbjct: 458 KMLTKCPQLSEDGYKLGDKVKGRILHAKYSKYMQEIAKVEPKLVEELAEKGGRFTHHTSI 517 Query: 767 APTATIANIC--GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMI-SD 823 APT TI+ S I+PS+ + Y ++ + ++ D++ ++ Sbjct: 518 APTGTISLSLANNASNGIEPSFSHHYARNII--------REGRKTKEKVDVFSFELLAYR 569 Query: 824 LKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSG 882 + G++ E L T+ ++ P ++ + QKW+D + S + + + Sbjct: 570 HMVNPGAMPFSEDEDKKLPAYFTTSDDVTPSQHVDIQAAAQKWVDSSISKTANVPTDFAY 629 Query: 883 KKLDFIYRQAWLMGLKTTYYLR 904 + IY A+ GLK R Sbjct: 630 QDFKDIYLYAYDKGLKGCTTFR 651 >gi|225873206|ref|YP_002754665.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidobacterium capsulatum ATCC 51196] gi|225793913|gb|ACO34003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Acidobacterium capsulatum ATCC 51196] Length = 1083 Score = 280 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 123/623 (19%), Positives = 233/623 (37%), Gaps = 58/623 (9%) Query: 346 LSSFHFMCSTPTLFNSGTRH--PQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGND 403 ++H+ T + S T + PQ S+CF+ V D L I + ML K+ G G + Sbjct: 164 AQNWHWNPHTCAVEFSVTGYRNPQCSACFINAVDDSLDSILTLAKTEGMLFKWGSGTGTN 223 Query: 404 WTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGK-RKGAVCAYLETWHIDVEEF 462 +P+RG + G G + G + F++ + A + GGK R+ A L H D+ +F Sbjct: 224 LSPIRGSMEQLSG-GGTASGPLSFMRGFDAFAGVIKSGGKTRRAAKMVILNVDHPDIVDF 282 Query: 463 LDLRKNTGDDRRR-THDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIA 521 ++ + + + PD + + + ++D + + E Sbjct: 283 IECKMKEEAKAWALMREGYDGSSGPD-----SEAYSSIFFQNANNSVRVNDEFMRAVEKD 337 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHS 581 E R G + A + K+ ++ G P + + N ++ G +++ Sbjct: 338 GEFTTRTVKDGA--AVKTYKAREIMHKIAEATWQCGDPGMQYDSTINRWHTSKNSGRINA 395 Query: 582 SNLCTEITLNSSSEETAVCNLGSINLLAHFAN-NQFDYDKLASTIRTAVRVLDNVIDINC 640 SN C+E + + CNL S NLL FD I + ++ ++D + Sbjct: 396 SNPCSEYMF----LDNSACNLASFNLLKFMTPAGTFDIRAYRHAIDVLITAMEILVDNSG 451 Query: 641 HTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVE 700 + E +++H +R +GLG + L L +PY S + A + A S Sbjct: 452 YPTENIARNSHDYRPLGLGYANLGALLMALGLPYDSDAGRDFAATLTAIMCGEAYLQSSR 511 Query: 701 LAQERGA----------YSSFKGSL---WDQGVFPIDSIGLLAEVRDEL----------- 736 +A++ G+ + +D I + +++ Sbjct: 512 IAEKCPPLASATPLTASVERNGGACPGFYVNREPFLDVIRMHRAEVNKIGKSKTSSEPFK 571 Query: 737 -----AMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL- 789 A+ S+ WD+ + G RNS +APT TI + + I+P + Sbjct: 572 VPELDALITASKECWDQALAHGEKYGYRNSQVTVLAPTGTIGFMMDCDTTGIEPDLALVK 631 Query: 790 YVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHD--GSIGNIERIPDDLKKIHAT 847 Y K G +VN+ + L + +E + + + Y D G+I I + + Sbjct: 632 YKKLVGGGMIKIVNNTVPAALFKLGYKNEDVDAIVSYIDATGTIEGAPGIKPEHLAVFDC 691 Query: 848 AF-------EIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKT 899 +F I + I+ + Q ++ A S + + + + + Y ++W GLK Sbjct: 692 SFKPAKGTRSIHYLGHIKMMAATQPFLSGAISKTVNMPHDSNIDDIAEAYLESWRQGLKA 751 Query: 900 TYYLRSRSATSVEKSTLKGVDGK 922 R S + + G K Sbjct: 752 VAIYRDGSKGAQPLNVSDGKGAK 774 >gi|282598965|ref|YP_003358882.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage phiW-14] gi|257219035|gb|ACV50050.1| ribonucleotide-diphosphate reductase subunit alpha [Deftia phage phiW-14] Length = 711 Score = 280 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 158/676 (23%), Positives = 268/676 (39%), Gaps = 97/676 (14%) Query: 279 VYLANDLKYER-DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEK 337 YL + R D + L +++ E Q R A+ + Sbjct: 4 EYLGIIIDETRTDTSKGRTASNYLITQHYSR----PGETIQQTIARAAV----AWSSNLA 55 Query: 338 RAVEFYNLLSSFHFMCSTPTLFNSG----TRHPQLSSCFLTTVPDDLYGIFGALQENAML 393 A Y+ S F+ ++P N+ SCFL VPD + G+ E ++L Sbjct: 56 HAQRLYDYASKDDFIWASPAFSNATLPGEKIRAMPISCFLPDVPDSVPGLLYQKAELSLL 115 Query: 394 AKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLE 453 + V I + K+ G IPF+ + +A QG R+GA+ A L Sbjct: 116 SVLG-------GGVGQNFGGIRSVSDKAPGPIPFIAENDSAILAWKQGKIRRGALSANLG 168 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D EF+ +R TGD R++ +++ + D +M+ V Sbjct: 169 VTHPDTMEFMRIRVPTGDIERKSLNIHHGFNVTDEYMQAVVDGIETLPL----------- 217 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 K ++ +R+M+T+ TG P++ F D Sbjct: 218 ----------------IDPTGKQVGSMNPREHFREMVTVRSRTGEPFMYFIDRAQEYLSL 261 Query: 574 QHV---GVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH------FANNQFDY-DKLAS 623 ++N+CTEITL ++ + T VC L SIN + + D + L + Sbjct: 262 PQKLIGMACKATNICTEITLAATKDRTPVCCLCSINAERYEDFKPYYQEMVSDLIEMLDN 321 Query: 624 TIRTAVRVLDNVI---------DINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPY 674 I V+ ++ V D+ ++K KKS R++GLG+MG L + + Sbjct: 322 IIEFFVQNVEKVAEGYADQLDRDLIRLLVQKVKKSAECERSVGLGVMGLAYMLQRADMVF 381 Query: 675 ASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRD 734 A ++ E E + + +AS L ERG + ++ L D Sbjct: 382 AGEDSREYELEFFRQLKDFSHAASCRLGIERGVPPDIQA--------YLEKCKELGIEPD 433 Query: 735 ELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSN 794 +NR RN + +AIAP A + I S SI+ Y N+Y + Sbjct: 434 PYWVNR------------------RNLHLLAIAPNANSSVILNTSASIEFMYSNVYSREM 475 Query: 795 MSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPM 854 +G F V N +L L+ + E + + +K GS+ ++ + + K+++A E++ M Sbjct: 476 RTGTFEVRNRYLEKLLESQGRNTEEVWNQIKADSGSVKGLDFLTEHQKRVYAVPEEMNMM 535 Query: 855 WLIESASRRQKWIDQAQSLNLYLDEPSGKKLD---FIYRQAWLMGLKTTYYLRSRSATSV 911 ++ A RQ +I QAQSLNL+ P G ++ ++ AW +G+K+ YY ++ S + Sbjct: 536 DVVVRAGERQVYICQAQSLNLFF--PPGSDINFVMAVHILAWKVGVKSLYYYKTESEVKI 593 Query: 912 EKSTLKGVDGKLNAVP 927 EK + K KL Sbjct: 594 EKPSDKTEREKLTQDE 609 >gi|4490609|emb|CAB38642.1| ribonucelotide reductase major subunit [Staphylococcus aureus] Length = 718 Score = 280 bits (717), Expect = 7e-73, Method: Composition-based stats. Identities = 162/695 (23%), Positives = 285/695 (41%), Gaps = 67/695 (9%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 ++ + ++ + Y F Y E + + + F+ + K+ + Sbjct: 61 KDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFK 120 Query: 290 DFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSF 349 D+A + + Y H VA+ + +A +F + + Sbjct: 121 DYALKTNDKSQYLEDYNQH---------------VAIVALYLANGNKAQAKQFISAMVEQ 165 Query: 350 HFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVR 408 + +TPT N+G +L SCFL V D L I L+K GG+ + + +R Sbjct: 166 RYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLR 225 Query: 409 GLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKN 468 G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 226 ARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKV 285 Query: 469 TGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFE-IAYENYER 527 D+ R ++T +P F + + +F+P V + + + + + Y + Sbjct: 286 NADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMV 345 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 E K +A + + ++G+P++ FKD N P ++G + SNLCTE Sbjct: 346 ANPNVEKKKK---NAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTE 402 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-N 639 I N E + S NL + N + K ++ + + L V D+ N Sbjct: 403 IFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVAN 462 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 +K+N ++GLG+M L I Y S EA + A+ ++F++I S+ Sbjct: 463 IQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSM 522 Query: 700 ELAQERG-AYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLPWDELKKR 752 E+A+ERG Y F+ S + G + + +VR+ M + W +L++ Sbjct: 523 EIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQD 582 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 583 VEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPF----LSP 638 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W +AF D M LI+ + Q IDQ S Sbjct: 639 QTMW---------------------------YCKSAFNTDQMKLIDLIATIQTHIDQGIS 671 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 672 TILYVNSEISTRELARLYVYAHYKGLKSLYYTRNK 706 >gi|15829012|ref|NP_326372.1| ribonucleotide-diphosphate reductase subunit alpha [Mycoplasma pulmonis UAB CTIP] gi|14089956|emb|CAC13714.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (RIBONUCLEOTIDE REDUCTASE) [Mycoplasma pulmonis] Length = 711 Score = 280 bits (716), Expect = 7e-73, Method: Composition-based stats. Identities = 152/688 (22%), Positives = 287/688 (41%), Gaps = 64/688 (9%) Query: 245 HHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDR 304 H + + + ++ + L + L L + F ++G+ Y+ Sbjct: 45 HFRVFESFEKRIEFLVKNNYYEKSLIDQYTISQLKELNDLAYSYNHFFPSFMGILKFYNA 104 Query: 305 YFLH--INGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSG 362 Y L +E + + A+ LA + EK K ++ + F +TPT N+G Sbjct: 105 YALKSFDGKEYLENFEDRALMNALFLANGDFEKAKAILK---EIMLKRFQPATPTFLNAG 161 Query: 363 TRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKS 421 + SC+L D++ I ++ + L+K GG+ T +R LGA I ++ Sbjct: 162 KAQRGEYVSCYLIRTEDNMESISRSITTSLQLSKRGGGVAVLLTNLRELGAPIKNIQNQA 221 Query: 422 QGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNT 481 G+IP +K+ D+ NQ G+R+GA YL H D+ +FLD ++ D++ R ++ Sbjct: 222 TGIIPIMKILEDSFSYANQLGQRQGAGAVYLNIHHPDILQFLDSKRENADEKIRIKSLSL 281 Query: 482 ANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-I 540 + D+ + N LFSP D+ Y K E K+ + I Sbjct: 282 GLVVTDIAFELAKNNEKLALFSP---YDIQKEYKKPMSDISITQEYYNLLKNDKIKKTYI 338 Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQH-------VGVVHSSNLCTEIT---L 590 +A L+ + + FE+G+P++ F D N R+ + + + +E + Sbjct: 339 NARKLFTLIAELHFESGYPYLLFDDTVNRRNAHPNRIVMSNLCSEIVQPSTASEYSADLS 398 Query: 591 NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSN 650 + + CNLGS+N+ + ++ L + A+ + D++ + +K N Sbjct: 399 YTKVGDDISCNLGSLNIAKALES-GREFKSLVANSIFALNQVSRKADLS--SAPSIEKGN 455 Query: 651 HTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSS 710 + + AIGLG M L I Y S EA++ + ++++A AS EL+ G + Sbjct: 456 NKNHAIGLGAMNLHGFLANNEIFYNSQEALDFTNMFFYAMAYYAFEASQELSLIYGKFHG 515 Query: 711 FKGSLWDQGVFPIDS-----------IGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMR 759 F+ + + G + + ++ ++ S+ W EL +++K G+ Sbjct: 516 FEKTKFADGSYFEKYTKGDENKWKAKTKKVQDILEKYDFYIPSQKDWIELVEKIKKTGIA 575 Query: 760 NSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEA 819 NS+ MAIAPT +I+ + + S+ P + + V ++ +L Sbjct: 576 NSHLMAIAPTGSISYLSSCTPSLQPVVAPVEARKEGKLGRVYVPAY--------NLNSNN 627 Query: 820 MISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE 879 ++ A+E+ P+ +I+ A+ Q+ IDQA SL L+L + Sbjct: 628 FKYYIEG---------------------AYEMGPIPIIDIAAEAQQHIDQAISLTLFLTD 666 Query: 880 -PSGKKLDFIYRQAWLMGLKTTYYLRSR 906 + + L+ Y A+ G + YY+R R Sbjct: 667 KATTRDLNKAYIHAFKKGCSSIYYVRVR 694 >gi|320546424|ref|ZP_08040739.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus equinus ATCC 9812] gi|320448809|gb|EFW89537.1| ribonucleotide-diphosphate reductase subunit alpha [Streptococcus equinus ATCC 9812] Length = 719 Score = 280 bits (716), Expect = 9e-73, Method: Composition-based stats. Identities = 152/714 (21%), Positives = 281/714 (39%), Gaps = 82/714 (11%) Query: 230 REVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYER 289 +E L + + + + + ++ + +F + L+ DL Sbjct: 32 KEALQAFFLENVIPNTMTFNSITDKINYLIEHDYLEEAFIRSYSPEF-IESLSRDLHAHH 90 Query: 290 DFAFEYLGLQILYDRYFLHING--SRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLS 347 ++ Y +Y L N +E + R+ E A + + Sbjct: 91 FRFKSFMAAYKFYQQYALKTNDGSQYLESIED---RILFNALYFADGNEDLAKDLATEMI 147 Query: 348 SFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTP 406 + + +TP+ N+ +R + SCFL ++ DD+ I ++ L++ GG+G + + Sbjct: 148 NQRYQPATPSFLNAGRSRRGEFVSCFLISMTDDMNSIGRSINSALQLSRIGGGVGINLSN 207 Query: 407 VRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLR 466 +R GA I G G + GV+P +K+ D+ NQ G+R+GA YL+ +H D+ FL + Sbjct: 208 LREAGAPIKGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGAVYLDVFHPDILAFLSTK 267 Query: 467 KNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 K D++ R ++ +PD F + N LFSP V + + +I E Sbjct: 268 KENADEKVRVKTLSLGITVPDKFYELTRNNEDMYLFSPFSVEREYGVPYSYVDITAEYDN 327 Query: 527 RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCT 586 A+ +K KI A L ++ + E+G+P++ D N +P G + SNLC+ Sbjct: 328 MVANPNIVKT--KIKARDLETEISKLQQESGYPYVVNIDTANRTNPI--DGKIIMSNLCS 383 Query: 587 EI------------TLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDN 634 E+ + CNLGS N++ + +I+ R L Sbjct: 384 EVLQVQTPSVINDAQEFTKMGTDISCNLGSTNIVNMMTSP-----DFGRSIKAMTRALTF 438 Query: 635 VIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFH 693 V D + ++ K N GLG MG + L HI Y SPE++E + +++ Sbjct: 439 VSDTSSIESVPTIKHGNEQAHTFGLGAMGLHTFLAQNHIQYGSPESIEFTNIYFMLLNYW 498 Query: 694 AISASVELAQER-GAYSSFKGSLWDQGVFPIDSIGLLAEVRDE------LAMNRTSRLPW 746 + S ++A+ER + F+ S + G + I + + S W Sbjct: 499 TLVESNKIARERKQTFVGFEKSSYADGSYFDKYITDDYVPKSDRVKELFAKHFIPSGKDW 558 Query: 747 DELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSF 805 EL+ V G+ + N +A+AP +I+ I VS S+ P Q + + G Sbjct: 559 LELRDAVMRDGLYHQNRLAVAPNGSISYINDVSASLHPITQRIEERQEKKIGKIYYP--- 615 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 + + + +A+++D +I+ + + Sbjct: 616 ----------------------------AAGLSTETIPYYTSAYDMDMRKVIDVYAAATE 647 Query: 866 WIDQAQSLNLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 +DQ SL L+L + + + L + A+ G+K+ YY+R+ Sbjct: 648 HVDQGLSLTLFLRSDIPEGLYEWKTQSKQTTRDLSILRHYAFNKGIKSIYYIRT 701 >gi|321496612|ref|YP_004207897.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru] gi|320332514|gb|ADW24402.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru] gi|320332597|gb|ADW24484.1| ribonucleotide reductase large subunit [Rodent herpesvirus Peru] Length = 772 Score = 280 bits (715), Expect = 9e-73, Method: Composition-based stats. Identities = 162/762 (21%), Positives = 277/762 (36%), Gaps = 93/762 (12%) Query: 250 CLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGL---QILYDRYF 306 Y + F +E + A L L L G + YD Y Sbjct: 46 DEYRDVFKDVLEMELSAFL---EKNKEGLQELLQQFMRNGYDNLVGRGYLSAKRFYDTYV 102 Query: 307 LHINGSRIEMPQAFFMRVAMG-----------------LALKETEKEKRAVEFYNLLSSF 349 L +G E F+RV+ L ++ F+ ++S+ Sbjct: 103 LRGSGKV-ESVPFLFLRVSCFCAYQCLQNPCLADTVKALNSWVIDEVSLVKYFFRMVSTM 161 Query: 350 HFMCSTPTLFNSGTRHPQLSSCFLTT--VPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 C+TP L ++G + LSSCF+ + + + E L + G+G + Sbjct: 162 TVCCATPILRSAGVQGANLSSCFIIDRDMTTERETVQAVCSELTSLLECKSGVGINCAMF 221 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 I+ L++ N N R + Y+E WH + FL + Sbjct: 222 SHGEKSINS----------LLQMVNGITAYFNDSNVRPVSTALYIEIWHHQIMSFLTAKL 271 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQN--AGWTLFSPDEVSDLHDLYGKEFEIAYENY 525 + R ++ + DLF K N W LF P + L LYGK FE AY Sbjct: 272 PENPE--RCANVFQGVSVCDLFFKMYKNNPDGEWFLFDPGQFPGLTGLYGKTFEEAY--- 326 Query: 526 ERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGV-VHSSNL 584 A + K + ++ +++ + +TG P++ KD N + G + ++NL Sbjct: 327 --MALVRDGKFKASVPLKSVMFALVSSIVKTGGPYVMSKDAMNRHHWHETQGQAIVAANL 384 Query: 585 CTEITLNSSSEETAVCNLGSINLLAHFANN-----------------QFDYDKLASTIRT 627 CTE+ + + CNL SI+L + F Y L + T Sbjct: 385 CTEVIQAPGD-DISTCNLASISLPECMHMHGNGHSEGGLSCGQTTDKTFCYSFLEKAVET 443 Query: 628 AVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESM 687 AV V++ I EK + R++G+G+ G + + Y ++ EI M Sbjct: 444 AVFVINACIVGGMAPTEKVARG-QLFRSMGIGVQGLADVFAMCGLEYFDEKSEEIDSRIM 502 Query: 688 EFISFHAISASVELAQER--GAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLP 745 E + F A+ S+ + + + ++ S +G F + R ++ S Sbjct: 503 ESMYFTAVKTSMNIVKLGGGEPHKRWEKSKLSKGQF---HWQEFTDCRPKVH----SLSQ 555 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W L G N+ +A+ PTA + + G + S P + N+ K + + N Sbjct: 556 WSALSTDCAMYGTYNAQFIALMPTAGTSQLTGYADSCYPFFGNMATKVSNKEEIMRPNRM 615 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 ++ + DL + ++ G + + D ++ +AFE P I A R Sbjct: 616 FIDSIVPDDL------AAIRQVGGDLAKLPPALADKYRLFKSAFEYSPEDYIRRARVRAP 669 Query: 866 WIDQAQSLNLYLDEPSGKK---LDFIYRQAWLMGLKT-TYYLRSRSATSVEKST-LKGVD 920 ++DQ+QS+ L+L+E K + + A +GLKT YY R + T + + G Sbjct: 670 FVDQSQSMTLFLNEKEASKASYVKDLLMYAQEIGLKTLMYYCRIKKETICCDFSCVPGPA 729 Query: 921 GKLNAVPVTDPNSSTHSLGIP--------SSCTSDTECEVCQ 954 + V P S G C + C CQ Sbjct: 730 ATPSPVSSFMPESDGDGEGQSGHVSIKRDRECDEEQCCSACQ 771 >gi|307703870|ref|ZP_07640811.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis ATCC 35037] gi|307622705|gb|EFO01701.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptococcus oralis ATCC 35037] Length = 623 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 150/646 (23%), Positives = 264/646 (40%), Gaps = 77/646 (11%) Query: 296 LGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCST 355 + Y++Y L N + ++ RV E A + N + + +T Sbjct: 1 MAAYKFYNQYALKTNDGEYYL-ESMEDRVFFNALYFADGDEAIATDIANEIIHQRYQPAT 59 Query: 356 PTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHI 414 P+ N+G +L SCFL V DD+ I ++ L++ GG+G + +R GA I Sbjct: 60 PSFLNAGRARRGELVSCFLIQVTDDMNSIGRSINSALQLSRIGGGVGISLSNLREAGAPI 119 Query: 415 HGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRR 474 G G + GV+P +K+ D+ NQ G+R+GA YL +H D+ FL +K D++ Sbjct: 120 KGYEGAASGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKV 179 Query: 475 RTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEI 534 R ++ +PD F + +N LFSP V + + + E Y+ I Sbjct: 180 RVKTLSLGVVVPDKFYELARKNEEMYLFSPYSVELEYGV-PFNYIDITEKYDELVANPNI 238 Query: 535 KVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSS 594 + + I A L ++ + E+G+P++ D N +P G + SNLC+EI Sbjct: 239 RKTK-IKARDLETEISKLQQESGYPYVVNIDTANRANPV--DGKIIMSNLCSEILQVQ-- 293 Query: 595 EETAVCNLG----------SINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTI 643 E ++ N S NL + N +IR VR L V D + + Sbjct: 294 -EPSLINDAQEFLQMGTDVSCNLGSTNVVNMMTSPDFGRSIRAMVRALTFVTDSSHIVAV 352 Query: 644 EKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQ 703 N GLG MG S L I Y S E+VE +++ + S +A+ Sbjct: 353 PTIDHGNSLAHTFGLGAMGLHSYLAQQLIEYGSAESVEFTSIYFMLMNYWTLVESNNIAR 412 Query: 704 ERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVRDELAMNRTSRLPWDELKKRVK 754 ERG + +F+ S + G + + + E+ ++ + + W EL+++V+ Sbjct: 413 ERGITFHNFEKSDYANGSYFDKYVTGEFVPKSDRVKELFKDVFIPSAT--DWAELREKVQ 470 Query: 755 TIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQR 813 G+ + N +A+AP +I+ I VS SI P Q + + G Sbjct: 471 ADGLYHQNRLAVAPNGSISYINDVSASIHPITQRIEERQEKKIGKIYYP----------- 519 Query: 814 DLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSL 873 + D + +A+++D +I+ + + +DQ SL Sbjct: 520 --------------------AAGLSTDTIPYYTSAYDMDMRKVIDVYAAATEHVDQGLSL 559 Query: 874 NLYL--------------DEPSGKKLDFIYRQAWLMGLKTTYYLRS 905 L++ ++ + + L + A+ G+K+ YY+R+ Sbjct: 560 TLFMRSDIPKGLYEWKKENKQTTRDLSILRNYAFNKGIKSIYYVRT 605 >gi|241888655|ref|ZP_04775962.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella haemolysans ATCC 10379] gi|241864678|gb|EER69053.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemella haemolysans ATCC 10379] Length = 696 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 166/702 (23%), Positives = 283/702 (40%), Gaps = 58/702 (8%) Query: 225 LEKLRREVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLAND 284 KL ++V + + +EE + + + D L L Sbjct: 21 FFKLEKDVEAIEEFLREVDFRTVKFNSEMKRLRYLVEENFYYNIFDKYIEDEILECLELA 80 Query: 285 LKYERDFAFEYLGLQILYDRYFLHINGSRIEM---PQAFFMRVAMGLALKETEKEKRAVE 341 ++ +F Y+ Y Y L N + + Q F+ VAM LA A E Sbjct: 81 ANFKFEFK-SYMAASKFYKDYALKTNDKKQYLENFNQHVFI-VAMYLA---DGDVALAKE 135 Query: 342 FYNLLSSFHFMCSTPTLFNS-GTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGL 400 + +TPT NS +R +L SCFL V D L I L+K GG+ Sbjct: 136 LMIAMLEQRLQPATPTFLNSGRSRRGELVSCFLLEVGDSLNSINYIDSTAKQLSKIGGGV 195 Query: 401 GNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVE 460 + + +R G I G G ++GVIP K +Q G+R GA YL +H DV Sbjct: 196 AINLSKLRARGESIKGIKGVAKGVIPVAKSLEQGFAYADQLGQRPGAGAVYLNIFHYDVL 255 Query: 461 EFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEI 520 EFLD +K D+ R ++T +P LF +N + +F P + + + L + +I Sbjct: 256 EFLDTKKVNADEELRLPTISTGIIVPSLFFDLARENKDFYMFGPHSIYEEYGLVLDDIDI 315 Query: 521 AYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVH 580 A A+ +K RK A + + ++G+P++ FKD N + +G V Sbjct: 316 AKYYDRFVANENIMK--RKFDARDMLNLIAQTQLQSGYPYLMFKDNANKNHALREIGQVK 373 Query: 581 SSNLCTEITLNS-------SSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLD 633 SNLCTEI E+ + S NL + N + K+ +I + + L Sbjct: 374 MSNLCTEIFQLQETSVIKDYGEDDIIKRDISCNLASLNIVNVMESKKIKESIYSGMDALT 433 Query: 634 -NVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISF 692 K+N ++GLG M L I Y S EA + A+ +++ Sbjct: 434 FVSNSTKIKNAPGVVKANDEFHSVGLGAMNLNGYLAKNLIAYESEEAKDFANVFFMMMNY 493 Query: 693 HAISASVELAQ-ERGAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELA-MNRTSRLP 745 + + S+++A+ + F+ S + G + D + + +V+ + ++ Sbjct: 494 YTLERSMQIAKDRNETFKDFEKSDYYNGSYFTKYIENDYLPVTEKVKALFEGIYIPTKED 553 Query: 746 WDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSF 805 W LK RVK G+ ++ MAIAPT +I+ + + S+ P + +S + + + Sbjct: 554 WRSLKNRVKENGLYHAYRMAIAPTQSISYVQNSTSSVLPIVDKIERRSYGNAETFYPMPY 613 Query: 806 LVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK 865 L + + +AF +D M LI+ S Q+ Sbjct: 614 L-------------------------------SPKTQWFYKSAFTMDQMKLIDLMSVIQE 642 Query: 866 WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 +DQ S+ L+++ + + ++L Y A GLK+ YY R++ Sbjct: 643 HVDQGISVILFVNSDITTRELARYYIYAHHKGLKSLYYTRNK 684 >gi|319891737|ref|YP_004148612.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161433|gb|ADV04976.1| Ribonucleotide reductase of class Ib (aerobic), alpha subunit [Staphylococcus pseudintermedius HKU10-03] gi|323465094|gb|ADX77247.1| ribonucleoside-diphosphate reductase, alpha subunit [Staphylococcus pseudintermedius ED99] Length = 701 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 168/695 (24%), Positives = 287/695 (41%), Gaps = 58/695 (8%) Query: 231 EVLTTVYKKPQKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERD 290 E L + ++ Q T H L +F ++ + E + LV L Sbjct: 34 EALASYLEEIQDKTVHFDSELERLHF--LVDNHFYYNVF-EEYSEAQLVELIAFATEIPF 90 Query: 291 FAFEYLGLQILYDRYFLHINGS--RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSS 348 Y+ + Y L N +E M V+ LA + A + + Sbjct: 91 RFASYMSASKFFKDYALKTNDKSQYLEDYHQHVMIVSFYLA---KGNVELAKKLIQAMVE 147 Query: 349 FHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPV 407 + +TPT N+G +L SCFL V D L I L+K GG+ + + + Sbjct: 148 QRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKL 207 Query: 408 RGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 R G I G G ++GV+P K +Q G+R GA YL +H DVEEFLD +K Sbjct: 208 RARGEAIKGIKGVAKGVLPIAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKK 267 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYER 527 D+ R ++T +P F + + + +F+P V + + + E Y+R Sbjct: 268 INADEDLRLSTISTGLIVPSKFFELAKEGKDFFMFAPHTVEQEYGVTLDDIN-IDEYYDR 326 Query: 528 QADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTE 587 + I + + A + + ++G+P++ FKD N ++G + SNLCTE Sbjct: 327 LVENPNI-MKKSKDAREMLNMIAQTQLQSGYPYLMFKDNANRVHANSNIGQIKMSNLCTE 385 Query: 588 ITL-------NSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-IN 639 I + + + S NL + N + ++ ++ T + L V D N Sbjct: 386 IFQLQETSVIHDYGVDDEIKRDISCNLGSLNIVNVMESNQFRDSVHTGMDALTVVSDEAN 445 Query: 640 CHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASV 699 KK+N ++GLG+M L HI Y S EA + AD +++++I S+ Sbjct: 446 IQNAPGVKKANSELHSVGLGVMNLHGYLAKNHISYESEEAKDFADVFFMMMNYYSIERSM 505 Query: 700 ELAQER-GAYSSFKGSLWDQGVFP-----IDSIGLLAEVRDELAMNRT-SRLPWDELKKR 752 ++A+ER + F S + G + D + +V+ A + +R W L+ Sbjct: 506 QIAKERGETFKDFDKSDYASGRYFERYTSEDFLPKSEKVKALFANHTIPTRDDWKVLQAE 565 Query: 753 VKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQ 812 V+ G+ ++ +AIAPT +I+ + + S+ P + ++ + + F L Sbjct: 566 VEKYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNSETFYPMPF----LSP 621 Query: 813 RDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQS 872 + +W + +AF ID M LI+ + Q IDQ S Sbjct: 622 QTMW---------------------------YYKSAFNIDQMKLIDLIATIQTHIDQGIS 654 Query: 873 LNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSR 906 LY++ E S ++L +Y A GLK+ YY R++ Sbjct: 655 TILYVNSEISTRELSRLYVYAHHKGLKSLYYTRNK 689 >gi|228904847|ref|ZP_04068901.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] gi|228854861|gb|EEM99465.1| Ribonucleoside-diphosphate reductase subunit alpha [Bacillus thuringiensis IBL 4222] Length = 635 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 155/657 (23%), Positives = 280/657 (42%), Gaps = 53/657 (8%) Query: 272 SMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALK 331 + ++ + + Y+ Y Y L + +I + R A+ Sbjct: 4 EYTEEEVQRIYEAAYTHKFEFQSYMAATKFYKDYSLRSDDKKIYLEDYE-DRAAIVALYL 62 Query: 332 ETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSCFLTTVPDDLYGIFGALQEN 390 + K+A+ + N + ++ +TPT NSG +L SCFL + D L I L Sbjct: 63 ASGNTKKALRYVNQIMKQNYQPATPTYLNSGKARAGELVSCFLLEMDDSLNSINYNLSVA 122 Query: 391 AMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCA 450 L+K GG+ + + +RG I G + GV+P +K+ D+ +NQ G+R GA A Sbjct: 123 KQLSKIGGGIAINLSKLRGRTEAIKGIENAASGVLPVMKLMEDSFSYINQLGQRPGAGAA 182 Query: 451 YLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDL 510 YL +H D+ EFLD +K D++ R ++ P F + QN LF+P V Sbjct: 183 YLNIFHWDLIEFLDSKKVNADEKTRIQSLSIGLVTPRKFFQLAEQNKEMYLFAPATVYKA 242 Query: 511 HDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIR 570 + ++ + ++ + E A+ K ++A + K+ T+ E+G+P+ K N + Sbjct: 243 YGVHLDDMDLDEKYDELVANPMVRKRKLDLTAREMLVKIATIQLESGYPYFMNKTNANEQ 302 Query: 571 SPQQHVGVVHSSNLCTEITLNSSSEETAVCNLG-------SINLLAHFANNQFDYDKLAS 623 P + +G V SNLCTEI + N+ S L + N + + Sbjct: 303 HPLKDLGGVKMSNLCTEIFQYMETSVINDYNIADWIKNDISCVLGSLNIVNVMENKDVKE 362 Query: 624 TIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEI 682 + T + +L +V D KK+N T ++GLG M L IPY S +A + Sbjct: 363 AVHTGMEMLTDVTDKSCIENAPGVKKANATLHSVGLGTMNLHGFLAKNFIPYESEDAKDF 422 Query: 683 ADESMEFISFHAISASVELAQERG-AYSSFKGSLWDQGVFPIDSI--------GLLAEVR 733 A +++H+I S E+A+ERG ++ F+ S + +G + + + ++ Sbjct: 423 ARVFFAMLNYHSIEKSTEIAKERGVSFEGFEKSEYAKGTYFEKYLTTEFLPQSEKVKKLF 482 Query: 734 DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKS 793 + + + T+ W+ L K+V+ G+ +S +AIAP + + + S+ P + +S Sbjct: 483 EGIQIPTTA--DWERLMKQVQRDGLYHSYRLAIAPNQSSGYVQNATPSVMPIVDKVETRS 540 Query: 794 NMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDP 853 + L ++ + + +A+E+D Sbjct: 541 TDKATTYYPMPY----LSKQTFFS---------------------------YKSAYEMDQ 569 Query: 854 MWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKTTYYLRSRSAT 909 M +I+ + Q +DQ S L++ S + L Y A GLK+ YY R+ ++T Sbjct: 570 MKVIDLIAEIQPHVDQGISCILHVTNGTSTRDLARYYIYAEKKGLKSLYYTRTSNST 626 >gi|239928523|ref|ZP_04685476.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces ghanaensis ATCC 14672] gi|291436848|ref|ZP_06576238.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces ghanaensis ATCC 14672] gi|291339743|gb|EFE66699.1| vitamin B12-dependent ribonucleotide reductase [Streptomyces ghanaensis ATCC 14672] Length = 966 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 119/617 (19%), Positives = 228/617 (36%), Gaps = 32/617 (5%) Query: 336 EKRAVEFYNLLSSFHFMCSTPTLFNSGTRH-PQLSSCFLTTVPDDLYGIFGALQENAMLA 394 E E L F ++P FN GT Q+S+CF+ +V D + I +E M+ Sbjct: 124 EIFEHELAYALLHQIFSFNSPVWFNVGTPQPQQVSACFILSVDDSMESILDWYKEEGMIF 183 Query: 395 KYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQG-GKRKGAVCAYLE 453 K G G + + +R + G + G + F++ A+ +A + G R+ A L+ Sbjct: 184 KGGSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGATRRAAKMVVLD 242 Query: 454 TWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL 513 H D+E+F++ + + R D + + + ++D Sbjct: 243 VDHPDIEDFIETKVKEEEKIRVLRDAGFDMDL------GGDDITSVQYQNANNSVRVNDE 296 Query: 514 YGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQ 573 + + E + R GE V ++ A AL+RK+ + P I + D N Sbjct: 297 FMQAVEQGGKFGLRARMTGE--VIEEVDAKALFRKIAEAAWACADPGIQYDDTINNWHTC 354 Query: 574 QHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFA-----NNQFDYDKLASTIRTA 628 G + +SN C+E + CNL S+NL+ N F+ ++ + Sbjct: 355 PESGRITASNPCSEYMH----LDNTSCNLASLNLMKFLKDDGKGNQSFETERFQKVVELV 410 Query: 629 VRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESME 688 + +D I +K ++ R +G+G + L Y S ++ Sbjct: 411 ITAMDISICFADFPTQKIGENTRAFRQLGIGYANLGALLMATGHAYDSDGGRALSGAITS 470 Query: 689 FISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIG----LLAEVRDELAMNRTSRL 744 ++ A S ELA G Y + + + + + + Sbjct: 471 LMTGTAYRRSAELAAIVGPYDGYARNADAHQRVMKQHADANGTAVRMDDLDTPVWAAATE 530 Query: 745 PWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNL-YVKSNMSGDFTVV 802 W ++ + + G RNS +APT TI + ++P + + K G +V Sbjct: 531 AWQDVLRLGEKNGFRNSQASVLAPTGTIGLAMSCDTTGVEPDLALVKFKKLVGGGSMQIV 590 Query: 803 NSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHATAF---EIDPMWLI 857 N + L++ +E + + + G++ + + + ++ A I PM + Sbjct: 591 NGTVPQALRRLGYQEEQIEAIVAHIAEHGNVIDAPGLKHEHYEVFDCAMGERAISPMGHV 650 Query: 858 ESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTL 916 + Q WI A S + + + ++++ IY +AW +G+K R S Sbjct: 651 RMMAAIQPWISGAISKTVNMPETATVEEVEEIYYEAWKLGVKALAIYRDNCKVGQPLSAK 710 Query: 917 KGVDGKLNAVPVTDPNS 933 K D K + + Sbjct: 711 KKEDEKKAEIAEKTEET 727 >gi|289746859|ref|ZP_06506237.1| ribonucleoside-diphosphate reductase alpha subunit nrdE [Mycobacterium tuberculosis 02_1987] gi|289687387|gb|EFD54875.1| ribonucleoside-diphosphate reductase alpha subunit nrdE [Mycobacterium tuberculosis 02_1987] Length = 783 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 159/655 (24%), Positives = 266/655 (40%), Gaps = 71/655 (10%) Query: 253 PEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQILYDRYFLH-ING 311 E I E R + + + L + ++ +LG Y Y L +G Sbjct: 71 DEKLDYLIRENYYEREVLDQYSRNFVKTLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDG 130 Query: 312 SRI-EMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLS 369 R E + + VA+ LA + A + + F +TPT NSG + + Sbjct: 131 KRYLERFEDRVVMVALTLAAGD---TALAELLVDEIIDGRFQPATPTFLNSGKKQRGEPV 187 Query: 370 SCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLK 429 SCFL V D++ I ++ L+K GG+ T +R GA I +S GVIP +K Sbjct: 188 SCFLLRVEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMK 247 Query: 430 VANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLF 489 + D NQ G R+GA YL H D+ FLD ++ D++ R ++ IPD+ Sbjct: 248 LLEDAFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDIT 307 Query: 490 MKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRK-ISAVALWRK 548 + +N LFSP D+ +YG F + + ++ + I A ++ Sbjct: 308 FELAKRNDDMYLFSP---YDVERVYGVPFADISVTEKYYEMVDDARIRKTKIKAREFFQT 364 Query: 549 MLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL------------NSSSEE 596 + + FE+G+P+I F+D N +P G + SNLC+EI + + Sbjct: 365 LAELQFESGYPYIMFEDTVNRANPI--DGKITHSNLCSEILQVSTPSLFNEDLSYAKVGK 422 Query: 597 TAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID-INCHTIEKAKKSNHTHRA 655 CNLGS+N+ D A TI A+R L V D + ++ ++ N+ A Sbjct: 423 DISCNLGSLNIAKT-----MDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHA 477 Query: 656 IGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGS 714 IGLG M L I Y S E ++ + + +HA+ AS +A ERG + F+ S Sbjct: 478 IGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERS 537 Query: 715 LWDQGVFPIDSIGLLAEVR--------DELAMNRTSRLPWDELKKRVKTIGMRNSNCMAI 766 + G F + E + + + ++ W LK+ V+ G+ N N A+ Sbjct: 538 KYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLKESVQAHGIYNQNLQAV 597 Query: 767 APTATIANICGVSQSIDPSYQNLYVKSNMS-GDFTVVNSFLVNELKQRDLWDEAMISDLK 825 PT +I+ I + SI P + ++ G ++ N+ Sbjct: 598 PPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTND---------------- 641 Query: 826 YHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEP 880 + + A+EI +I++ + + +DQ SL L+ + Sbjct: 642 ---------------NLEYYEDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDT 681 >gi|320332670|ref|YP_004169381.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Deinococcus maricopensis DSM 21211] gi|319753959|gb|ADV65716.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Deinococcus maricopensis DSM 21211] Length = 976 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 142/601 (23%), Positives = 231/601 (38%), Gaps = 91/601 (15%) Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL-KVA 431 + TV DD+ GI A ++ + AK D + +R GA I G+ G S G + FL ++ Sbjct: 213 ILTVQDDMGGIIDAARQVSETAKLGLEPRIDLSGMRPEGAPIKGSGGTSSGPVSFLVEIF 272 Query: 432 NDTAVAVN------------------------QGGKRKGAVCAYLETWHIDVEEFLDLRK 467 ++ N QGG R+GA A + H DV +FL + Sbjct: 273 DNFLEWANRGAETSGPINTLRYVYAPVLRVVRQGGTRRGAGMATISIGHADVLDFLTAKD 332 Query: 468 NTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDL------YGKEFEIA 521 + + + D Q G +V + L + F Sbjct: 333 LDREASEGDISTFNISILVDEAFWATLQANGLWAIPAQDVPGKYYLEPQKGKFSGSFPEL 392 Query: 522 YENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG---V 578 E E RG KI A LWR++ + TG P + F D N S +++G Sbjct: 393 PERAE-DGARGVPTYGGKIPAAWLWREIAQHAWSTGEPGLIFVDRINEYSALKNLGERYQ 451 Query: 579 VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI 638 + S+N C EI L C+LG+INL A+ + FDY + +RT VR LD+V+D+ Sbjct: 452 IKSTNPCGEIPLTVG----EPCDLGAINLAAYVKGSDFDYAAFRADVRTTVRFLDDVLDV 507 Query: 639 NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISAS 698 N +E ++++ + R +GLG+MG AL + + Y + E M + AI+ S Sbjct: 508 NVFALEDNREASQSLRRLGLGVMGLADALIKMGLRYDNEAGRTAIFEIMSALREEAIAES 567 Query: 699 VELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGM 758 L ERG Y + + P Sbjct: 568 ERLGAERGVYRVYTENADKIPHAP-----------------------------------R 592 Query: 759 RNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQR----- 813 RN + +APT T + + GVS I+P + + S +++ V L+ Sbjct: 593 RNVAVLTVAPTGTTSMLMGVSSGIEPVFSPFIWRKIGSEYRALLHPLFVELLETYPPAAN 652 Query: 814 ----DLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQKWID 868 WD + + + + GS+ + IPD L+++ A +I P+ + Q+ D Sbjct: 653 MDVDGKWDWDKVTEAVSENHGSVVGLSFIPDALQQVFVCAHDIKPLDHVRMQGAVQRAFD 712 Query: 869 ------QAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVDG 921 + S + L ++ + + + Y +A+ G K R S ST K Sbjct: 713 AEGYAANSLSKTINLPNDATVQDVQDAYTEAYRTGCKGITVYRDGSRQFQVLSTSKKKAK 772 Query: 922 K 922 K Sbjct: 773 K 773 Score = 54.5 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 65/222 (29%), Gaps = 45/222 (20%) Query: 291 FAFEYLGLQILYDRYFLHINGSRIEMPQAFFMRVAMGLALKE--TEKEKRAVEFYNLLSS 348 F+ I +Y +G F RVA +A E +E A +++L++ Sbjct: 11 KNFDENAHHIAKRQYMQPTDGDLA----GLFRRVATWVAGAEAPEAREHWAQAYFDLMAE 66 Query: 349 FHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQEN----AMLAKYSGGLGNDW 404 F + +GT+H + +CF+ + F + E A++ K GG G + Sbjct: 67 KKFCPGGRVMAGAGTQHGNVLNCFVQGATEHDPSSFAGIMEVAKKLALVTKVGGGNGVNL 126 Query: 405 TPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLD 464 G Y+ H DV +F++ Sbjct: 127 DVYTPRAPSSRPDAGVRGWA--------------------------YMSAAHPDVTDFIE 160 Query: 465 LRKNTGDD---------RRRTHDMNTANWIPDLFMKRVTQNA 497 R + + IP + QN Sbjct: 161 GMMRPPTQPDGDKEATAIRNWTRVVYGHAIPQDLVVLARQNG 202 >gi|111224293|ref|YP_715087.1| vitamin B12-dependent ribonucleotide reductase [Frankia alni ACN14a] gi|111151825|emb|CAJ63545.1| Vitamin B12-dependent ribonucleotide reductase (partial) [Frankia alni ACN14a] Length = 711 Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats. Identities = 117/613 (19%), Positives = 218/613 (35%), Gaps = 36/613 (5%) Query: 327 GLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTR-HPQLSSCFLTTVPDDLYGIFG 385 G + + E E LL F ++P FN GT Q++SCF+ D L + Sbjct: 93 GYFASDDDAEIFEHELIWLLLHQAFSFNSPVWFNVGTDLPQQVASCFILAADDSLDSVLD 152 Query: 386 ALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVNQGGKRK 445 ++ A+L + G G + + +R + + + G + ++ A+ +A ++ GG + Sbjct: 153 WYRDEALLFRGGAGSGVNLSRMRSTAELL-PSGRPAPGPVSIMRGADASAGSIRTGGAPR 211 Query: 446 GAV-CAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGWTLFSP 504 A L+ H D+ +F++ + R HD + + Sbjct: 212 PATKIVILDVDHPDIADFIECKAREERKIRALHDAGFDMDV------GGRDIDSVQFQNA 265 Query: 505 DEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFK 564 + + D + + A + RG+ + R + A ++R + +E P + F Sbjct: 266 NNAVRVSDAFMRAV--AADQSIELRARGDGQTVRTVPARKIFRMIAQAAWECADPGLHFD 323 Query: 565 DPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVCNLGSINLLAH-FANNQFDYDKLAS 623 D N G + +SN C+E + + C LGS+NLL + +FD A+ Sbjct: 324 DTINSWHTCPASGRISASNSCSEYMH----LDNSSCTLGSLNLLRFLGRDRRFDATSFAA 379 Query: 624 TIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIA 683 + V +D + + + + R +G+G + L Y S E A Sbjct: 380 AVELVVLAMDISLCFAEVPSRQIGDATRSFRQLGVGHANLGALLMATGQAYDSEEGRATA 439 Query: 684 DESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRT-- 741 +S A S E+A G Y F + A +R A R+ Sbjct: 440 AAITSLMSATAYRRSAEIAAVLGPYPGFTANAAAHRRVVARHSAAHAAIRHPPAARRSME 499 Query: 742 ----------SRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGV-SQSIDPSYQNLY 790 + L W+ + G RN++ IAPT T + I+P + Sbjct: 500 KSIHEQVLPRAGLEWERALLLGERHGWRNAHLTLIAPTGTTGLAMDCATMGIEPDLALVK 559 Query: 791 VKSNMSGD-FTVVNSFLVNELKQRDLWDEAMISDL--KYHDGSIGNIERIPDDLKKIHAT 847 V+ + +G +VN+ + L A+ + G + + + + + Sbjct: 560 VRKSATGSAMRLVNTTVPTALHALGYPRAAVARIVSFIAAHGHAVDAPGLRPEHQAVFDC 619 Query: 848 AF---EIDPMWLIESASRRQKWIDQAQSLNLYL-DEPSGKKLDFIYRQAWLMGLKTTYYL 903 A IDPM + + Q ++ S + L + + + W GLK Sbjct: 620 ALGPRAIDPMGHVRMMAAVQPFLSGGISKTVNLQASATVDDVAALLYAGWRRGLKALAVY 679 Query: 904 RSRSATSVEKSTL 916 R + S + Sbjct: 680 RDSAKVGQPISGV 692 >gi|324111309|gb|EGC05291.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 528 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 145/545 (26%), Positives = 238/545 (43%), Gaps = 56/545 (10%) Query: 380 LYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN 439 + I A+ L+K GG+ + +R GA I +S GVIP +K+ D N Sbjct: 1 MESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYAN 60 Query: 440 QGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMKRVTQNAGW 499 Q G R+GA YL H D+ FLD ++ D++ R ++ IPD+ +NA Sbjct: 61 QLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFHLAKENAQM 120 Query: 500 TLFSPDEVSDLHDLYGKEF-EIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETGH 558 LFSP D+ +YGK F +IA + + E + I+A ++++ + FE+G+ Sbjct: 121 ALFSP---YDVERVYGKPFADIAISEHYDELVADERIRKKYINARDFFQRLAEIQFESGY 177 Query: 559 PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC-------NLGSINLLAHF 611 P+I ++D N +P G ++ SNLC+EI +S+ E + S NL + Sbjct: 178 PYIMYEDTVNRANPI--AGRINMSNLCSEILQVNSASEYDENLDYARTGHDISCNLGSLN 235 Query: 612 ANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGFQSALHLL 670 + D A T+ TAVR L V DI + ++ + N AIGLG M L Sbjct: 236 IAHTMDSPDFARTVETAVRGLTAVSDISHIRSVPSIEAGNAASHAIGLGQMNLHGYLARE 295 Query: 671 HIPYASPEAVEIADESMEFISFHAISASVELAQER-GAYSSFKGSLWDQGVFPIDS---- 725 I Y SPEA++ + I++HA+ S+ LA+ER ++ FK S + G + Sbjct: 296 GIAYGSPEALDFTNLYFYTITWHALRTSMLLARERSETFAGFKQSRYANGEYFSQYLQGN 355 Query: 726 IGLLAEVRDELAMNR----TSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQS 781 EL +R W +L+ V G+ N N A+ PT +I+ I + S Sbjct: 356 WQPKTAKVGELFARSGITLPTREMWAQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSS 415 Query: 782 IDPSYQNLYVK-SNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840 I P + ++ +G F+ N + Sbjct: 416 IHPIVAKVEIRKEGKTGRVYYPAPFMTN-------------------------------E 444 Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDE-PSGKKLDFIYRQAWLMGLKT 899 ++ A+EI +I++ + + +DQ SL L+ + + + ++ AW G+KT Sbjct: 445 NLALYQDAYEIGAEKIIDTYAEAARHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT 504 Query: 900 TYYLR 904 YY+R Sbjct: 505 LYYIR 509 >gi|251797996|ref|YP_003012727.1| ribonucleoside-diphosphate reductase, subunit alpha [Paenibacillus sp. JDR-2] gi|247545622|gb|ACT02641.1| ribonucleoside-diphosphate reductase, alpha subunit [Paenibacillus sp. JDR-2] Length = 684 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 153/677 (22%), Positives = 272/677 (40%), Gaps = 53/677 (7%) Query: 256 FCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAF---EYLGLQILYDRYFLHINGS 312 ++ ++ + + F Y+ + Y Y + N Sbjct: 35 LREKLDYLIENDFYENVYDQYTYEQIEAVFTLTESSGFQFESYMAISKFYKDYAMKTNDK 94 Query: 313 RIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHP-QLSSC 371 + Q RVA+ +A+ + +TPT N+G ++ SC Sbjct: 95 SKYLEQYP-DRVAIVALNLGEGDGAKALRIAEAMIEQRLQPATPTFLNAGKSRRGEMVSC 153 Query: 372 FLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVA 431 FL + D L I L L+K GG+ + + +RG G I G G ++GV+P LK+ Sbjct: 154 FLLEMDDSLNSINYVLGTCMQLSKIGGGVAVNLSKLRGRGEAIKGVEGAAKGVMPVLKLM 213 Query: 432 NDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWIPDLFMK 491 D +Q G+RKG+ Y + D+ EFLD +K D++ R ++ IP+ F + Sbjct: 214 EDAFSYADQMGQRKGSGAGYYNIFGWDIIEFLDCKKINADEKTRIKTLSIGLIIPNKFYE 273 Query: 492 RVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLT 551 +N +F P V +D + + + YE ++ ++A + K+ + Sbjct: 274 LAAKNETLYVFGPHSVHKAYDKHLDDMD-MDVMYEELLANDKVVKKAVMNARDMMTKIAS 332 Query: 552 MLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITL-------NSSSEETAVCNLGS 604 + E+G+P+I K N + +G V SNLCTEI N + + S Sbjct: 333 IQLESGYPYIMNKSNANRVHALKDIGQVKMSNLCTEIFQVQETSTINDYGMDDVIRRDIS 392 Query: 605 INLLAHFANNQFDYDKLASTIRTAVRVLDNVIDI-NCHTIEKAKKSNHTHRAIGLGLMGF 663 NL + N + KL ++ + L V D+ +K+N ++GLG M Sbjct: 393 CNLASLNIVNVMERKKLKESVHVGIEALTTVSDVSEIDNAPGVRKANEELHSVGLGAMNL 452 Query: 664 QSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGA-YSSFKGSLWDQGVFP 722 I Y S EA E A +++++I S+E+A+ERGA + F S + +G + Sbjct: 453 NGFFAKNKIAYESDEAKEFASAFFMMMNYYSIEKSMEIAKERGASFKDFDRSEYAKGTYF 512 Query: 723 IDSIGLLAEVRDELA------MNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANIC 776 I + M S W +LK++V+ G+ ++ +AIAPT +I+ I Sbjct: 513 TRYIETDFRPASDSVKELFEGMEIPSPQDWADLKEKVQKNGLYHAYRLAIAPTQSISYIQ 572 Query: 777 GVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIER 836 + S+ P +++ ++ + +L Sbjct: 573 NSTSSVMPIVEHIETRTYANSTTYYPMPYL------------------------------ 602 Query: 837 IPDDLKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLD-EPSGKKLDFIYRQAWLM 895 D + +A+ ID LI+ Q+ +DQ S L+++ + ++L Y A Sbjct: 603 -AQDNYFYYKSAYNIDQFKLIDLIWEIQQHVDQGISTVLHVNSNVTTRELARFYIYAAQK 661 Query: 896 GLKTTYYLRSRSATSVE 912 GLK+ YY R++ + E Sbjct: 662 GLKSLYYTRTKRLSVEE 678 >gi|313680374|ref|YP_004058113.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oceanithermus profundus DSM 14977] gi|313153089|gb|ADR36940.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent [Oceanithermus profundus DSM 14977] Length = 961 Score = 278 bits (711), Expect = 3e-72, Method: Composition-based stats. Identities = 133/600 (22%), Positives = 234/600 (39%), Gaps = 91/600 (15%) Query: 373 LTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFL---- 428 + V DD+ GI A E A LA D++ +R GA + + G + G + +L Sbjct: 202 VIVVRDDMGGIMDAAAEAARLALAGEEPRVDFSQLRHEGAEVKSSGGTASGPVSYLLEIY 261 Query: 429 ---------------------KVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRK 467 V V QGG R+GA A ++ H DV +FL + Sbjct: 262 DNFLEWANRGGPDAGPVATLRYVYAPVLRVVRQGGTRRGAGMATIDVAHPDVLDFLTAKD 321 Query: 468 NTGDD-RRRTHDMNTANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYE 526 + N + D F++ + ++ W + Y + E AY Sbjct: 322 LDREAAEGDISTFNISILATDAFVEALEKDELWPVRLR---PVPGKYYLQPVEGAYTGEW 378 Query: 527 ------RQADRGEIKVFRKISAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVG--- 577 R + A +W ++ + TG P + F D N +S + +G Sbjct: 379 PELGVAEDGARPVPVYEGGVPARWIWHEVAWHAWATGEPGLIFIDRVNEKSALKGLGERW 438 Query: 578 VVHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVID 637 + ++N C EI L C+LG++NL A+ + FDY+ +RTAVR LDNV+D Sbjct: 439 QIRATNPCGEIPLTVG----EPCDLGALNLAAYVEDGAFDYEAFRRDVRTAVRFLDNVLD 494 Query: 638 INCHTIEKAKKSNHTHRAIGLGLMGFQSALHLLHIPYASPEAVEIADESMEFISFHAISA 697 +N +E ++++ R +GLG+MG AL + +PY S A E + M + A++A Sbjct: 495 VNVFALEDNREASQQLRRLGLGVMGLADALIKMGLPYDSEAAREAVWKIMSVMREEALAA 554 Query: 698 SVELAQERGAYSSFKGSLWDQGVFPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIG 757 S L ERG + ++ G I Sbjct: 555 SEALGAERGVFPLYEEEAEYFGRMGIKP-------------------------------- 582 Query: 758 MRNSNCMAIAPTATIANICGVSQSIDPSYQNLYVKSNMSGDFTVVNSFLVN--------- 808 RN + +APT T + + GVS I+P + + +V+ Sbjct: 583 RRNLAVLTVAPTGTTSMLMGVSSGIEPVFSPFVWRRIGGEYKPLVHPLFQELMEQHPPHP 642 Query: 809 ELKQRDLWD-EAMISDLKYHDGSIGNIERIPDDLKKIHATAFEIDPMWLIESASRRQK-- 865 + ++ WD + +I+ ++ + GS+ +E +P+ ++ + A ++ P+ + Q+ Sbjct: 643 DWEKDGTWDWDKLIAAIQENHGSVQGLEVVPESIRAVFKCAHDVSPLDHVRMQGVVQRAF 702 Query: 866 ----WIDQAQSLNLYLD-EPSGKKLDFIYRQAWLMGLKTTYYLRSRSATSVEKSTLKGVD 920 ++ + S + L E S + ++ Y +A+ G K R S S K + Sbjct: 703 DAEGYVGNSLSKTINLPHEASVEDVEAAYTEAYRTGCKGVTVYRDGSRDYQVLSVTKEEE 762 Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 39/186 (20%) Query: 293 FEYLGLQILYDRYFLHINGSRIEMPQAFFMRV