>gnl|CDD|162895 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain. Length = 571

Score = 228 bits (582), Expect = 6e-60 Identities = 179/607 (29%), Positives = 248/607 (40%), Gaps = 114/607 (18%) Query: 321 FMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDL 380 F +A A +E+ +F++LL+ +TP N+G SC + V DD Sbjct: 41 FKEIAQRAA-AHDIREEAEEKFFDLLARGKLALATPIFANTGLDRGLPISCAGSYVEDDT 99 Query: 381 YGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGKSQGVIPFLKVANDTAVAVN- 439 A E AMLAK G +R GA I NG+ G F + ++ N Sbjct: 100 ADFLEAQAEVAMLAKNGFGTALYLGDIRPRGADIR-DNGEHNGADAFAPLFDNFIETFNK 158 Query: 440 -QGGKRKGAVCAYLETWHIDVEEFLDL-RKNTGDDRRRTHDMNTANWIPDLFMKRVTQNA 497 R+G AYL+ H D EE L + ++ + + Sbjct: 159 VAAAGRRGECAAYLDFEHGDFEELLGIQLEHPA-----------------------SAHL 195 Query: 498 GWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKISAVALWRKMLTMLFETG 557 W FE E K+ R W ++L M ETG Sbjct: 196 FWG-----------------FEKEDRWLEELIAGDGEKMAR-------WAELLKMRAETG 231 Query: 558 HPWITFKDPCNIRSPQ--QHVGV-VHSSNLCTEITLNSSSEETAVCNLGSINLLAHFANN 614 ++ F D N ++P+ + +G+ + +SNLCTEI L S EE+ C L S+NLL Sbjct: 232 IGYLFFNDIANEKAPEAFKALGIPIRASNLCTEIALPSDDEESFTCCLSSLNLL------ 285 Query: 615 QFDYDKLASTIRTAVRVLDNVID--------INCHTIEKAKKSNHTHRAIGLGLMGFQSA 666 +D K A I T V LD+V D I T+EKA + RAIGLG +GF S Sbjct: 286 HWDEIKDADAIETLVIFLDSVCDDFIAKAEEIPYDTLEKAIRFAEKARAIGLGTLGFHSY 345 Query: 667 LHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGVFPIDSI 726 L + I + S A + E I A AS ELA+E G Sbjct: 346 LQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHG-------------------- 385 Query: 727 GLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICG-VSQSIDPS 785 DELA E K MRN+ +AIAP + A I G VS I+P Sbjct: 386 ------EDELA-------EVCEGK------EMRNATLIAIAPNKSSAFIAGGVSPGIEPL 426 Query: 786 YQNLYVKSNMSGDFTVVNSFLVNELKQR---DLWDEAMISDLKYHDGSIGNIERIPDDLK 842 N ++K + DF N FL LK + +E M H+GS+ +++ + D+ K Sbjct: 427 TCNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIEEKMEDIALEHNGSVQHLDFLTDEEK 486 Query: 843 KIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYL--DEPSGKKLDFIYRQAWLMGLKTT 900 + TA EID +I A+ RQK IDQAQS+NL+ DE + + A GLK Sbjct: 487 AVFKTAAEIDQHAIINLAAARQKHIDQAQSINLFFHADEAEPRDANAHRAFADDPGLKAL 546 Query: 901 YYLRSRS 907 YYL S Sbjct: 547 YYLFSER 553

RPSBLAST alignment for GI: 254780502 and conserved domain: TIGR02510