BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate
reductase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
         (954 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 954

 Score = 2001 bits (5185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 954/954 (100%), Positives = 954/954 (100%)

Query: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60
           MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK
Sbjct: 1   MHPSKDVNKGDEDAFPSLAYPFPEKIKGVQVIKRNGGVTSFDPSKISRAIMKAFMAVEGK 60

Query: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120
           GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL
Sbjct: 61  GASRSIRVQDIIKNLTEQTVTRLLQHNKSALIVHIEDIQDQVECSLMQSGHHKITREYVL 120

Query: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180
           YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI
Sbjct: 121 YREERSDVRAAQSHSKSDAPIAPKLKIMMDDGTLISFNSKRLEMIVEEACSGLQDVSSKI 180

Query: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240
           VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP
Sbjct: 181 VLSETYKNMYDGLSESDLETALIFSSRTLIEKEPNYAKVTARFLLEKLRREVLTTVYKKP 240

Query: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300
           QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI
Sbjct: 241 QKATHHEMQCLYPEYFCRYIEEGVKARLLHESMMDFDLVYLANDLKYERDFAFEYLGLQI 300

Query: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360
           LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN
Sbjct: 301 LYDRYFLHINGSRIEMPQAFFMRVAMGLALKETEKEKRAVEFYNLLSSFHFMCSTPTLFN 360

Query: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420
           SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK
Sbjct: 361 SGTRHPQLSSCFLTTVPDDLYGIFGALQENAMLAKYSGGLGNDWTPVRGLGAHIHGTNGK 420

Query: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480
           SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN
Sbjct: 421 SQGVIPFLKVANDTAVAVNQGGKRKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMN 480

Query: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540
           TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI
Sbjct: 481 TANWIPDLFMKRVTQNAGWTLFSPDEVSDLHDLYGKEFEIAYENYERQADRGEIKVFRKI 540

Query: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600
           SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC
Sbjct: 541 SAVALWRKMLTMLFETGHPWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNSSSEETAVC 600

Query: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660
           NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL
Sbjct: 601 NLGSINLLAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKAKKSNHTHRAIGLGL 660

Query: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720
           MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV
Sbjct: 661 MGFQSALHLLHIPYASPEAVEIADESMEFISFHAISASVELAQERGAYSSFKGSLWDQGV 720

Query: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780
           FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ
Sbjct: 721 FPIDSIGLLAEVRDELAMNRTSRLPWDELKKRVKTIGMRNSNCMAIAPTATIANICGVSQ 780

Query: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840
           SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD
Sbjct: 781 SIDPSYQNLYVKSNMSGDFTVVNSFLVNELKQRDLWDEAMISDLKYHDGSIGNIERIPDD 840

Query: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900
           LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT
Sbjct: 841 LKKIHATAFEIDPMWLIESASRRQKWIDQAQSLNLYLDEPSGKKLDFIYRQAWLMGLKTT 900

Query: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954
           YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ
Sbjct: 901 YYLRSRSATSVEKSTLKGVDGKLNAVPVTDPNSSTHSLGIPSSCTSDTECEVCQ 954


>537021.9.peg.476_1 
          Length = 241

 Score = 28.9 bits (63), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 303 DRYFLHINGSRIEMPQAFFMRVA 325
           D YFL +  SR+ MP  FF+ +A
Sbjct: 127 DEYFLTVQLSRVVMPSIFFISLA 149


>gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score = 27.7 bits (60), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 497 AGWTLF-SPDEVSDLHDLYGKEFEIAYEN 524
           A W L   PD + DL  LY KE ++   N
Sbjct: 53  AQWALLIQPDRIKDLVSLYQKELQLQATN 81


>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 869

 Score = 25.4 bits (54), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 292 AFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKET 333
             E+  L +LY R+F HI      IE+ + F      G+ + ET
Sbjct: 543 GIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHET 586


>gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 370

 Score = 25.0 bits (53), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 608 LAHFANNQFDYDKLASTIRTAVRVLDNVIDINCHTIEKA 646
           L    NN    + L+   RTA  V DN   + C  I  A
Sbjct: 13  LTALKNNWHSMNALSGNARTAAVVKDNAYGLGCEKIAPA 51


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,299
Number of Sequences: 1233
Number of extensions: 24273
Number of successful extensions: 63
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 10
length of query: 954
length of database: 328,796
effective HSP length: 83
effective length of query: 871
effective length of database: 226,457
effective search space: 197244047
effective search space used: 197244047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)