HHsearch alignment for GI: 254780503 and conserved domain: COG3968
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only].
Probab=99.91 E-value=2.5e-22 Score=166.73 Aligned_cols=272 Identities=24% Similarity=0.257 Sum_probs=193.4
Q ss_pred CCEEECCCCCEEEEECCCCCCCCCCCCCCCC--CCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC
Q ss_conf 6402322441799821678888777877888--877667877----7766544289999989976786311022101012
Q gi|254780503|r 143 LKPIIAPEIEFYLIAKNEDPDYPLQPPKGRS--GRSILGGQS----YSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEE 216 (461)
Q Consensus 143 ~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~--~~~~~~~~~----y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~ 216 (461)
T Consensus 214 V~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaipeRV~~FM~Dve~~LyaLGIpaKTrHNEV 293 (724)
T COG3968 214 VFSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIPERVSAFMKDVEKELYALGIPAKTRHNEV 293 (724)
T ss_pred HCCCCCCCCEEEEECHHHCCCCCCEEEECHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 13677843136886110103485626624021289999876122000124479999999889999998088533345655
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 78642011126652113789999999999998630660331123211356626899987631368742335886552156
Q gi|254780503|r 217 GPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDN 296 (461)
Q Consensus 217 gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~~ls~~ 296 (461)
T Consensus 294 APgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGt-d~g~NLLdPg-D~PhdN 371 (724)
T COG3968 294 APGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGT-DDGLNLLDPG-DMPHDN 371 (724)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCC
T ss_conf 87752441001156533207999999999988762558886158756757887756454146-8775657999-998756
Q ss_pred HH--HHHH----HHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC-----------------------------------
Q ss_conf 66--5457----776422321222076610134420465575433-----------------------------------
Q gi|254780503|r 297 FR--YFIG----GLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNN----------------------------------- 335 (461)
Q Consensus 297 ~~--~fia----Gil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~----------------------------------- 335 (461)
T Consensus 372 ~QFL~Fc~AvIkaVdkY~~LlRa~~a~AsND-hRLGANEAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg~~v 450 (724)
T COG3968 372 KQFLLFCTAVIKAVDKYADLLRASAANASND-HRLGANEAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLGISV 450 (724)
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 0000215889987888799999987515775-345567799612676403069999999964877666667632443120
Q ss_pred ------CCCCCCCCEEEEECCCCCCCCEEEEECCCCC---CCHHHHHHHHHHHHHHHHHHCCC--------CCCC-----
Q ss_conf ------4243345003650223886520353035877---99899999999999998984688--------8743-----
Q gi|254780503|r 336 ------AWGYDNRTTAFRIPFSDAKTKRIENRLPSSD---TNPYLVLAASLACGLLGILQKIE--------PTPP----- 393 (461)
Q Consensus 336 ------~WG~~NR~~~iRip~~~~~~~riE~R~~d~~---aNPYL~laail~agl~Gi~~~l~--------p~~~----- 393 (461)
T Consensus 451 lP~v~kdAgDRNRTSPFAF-----TGNkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe~kl~kg~dld~ai~~vl 525 (724)
T COG3968 451 LPAVEKDAGDRNRTSPFAF-----TGNKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLEGKLRKGSDLDAAIEAVL 525 (724)
T ss_pred CCCCCCCCCCCCCCCCCEE-----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 5566445565567887303-----06613685278654456645788899999999998998877632465788999999
Q ss_pred -----------CCCCCCCC--------HHCCC--CCHHHHHHHHHCCHHH
Q ss_conf -----------34530003--------11047--8989999998659898
Q gi|254780503|r 394 -----------TMKSANQE--------AINLP--RGLLEAVTLLENTSHF 422 (461)
Q Consensus 394 -----------~~~~~~~~--------~~~LP--~sL~eAl~~l~~d~~l 422 (461)
T Consensus 526 ~et~k~h~~vvFnGnGYSeeWhkeAekeRGL~NlrTT~dA~~~L~~~kn~ 575 (724)
T COG3968 526 TETVKDHKKVVFNGNGYSEEWHKEAEKERGLPNLRTTVDATKALIADKNV 575 (724)
T ss_pred HHHHHHHCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
T ss_conf 99998616687579875489999999853863035467788875032678