HHsearch alignment for GI: 254780503 and conserved domain: TIGR00653
>TIGR00653 GlnA glutamine synthetase, type I; InterPro: IPR004809 Glutamine synthetase type I (or glutamate-ammonia ligase) has a dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. Escherichia coli, Synechocystis sp. (strain PCC 6803) , Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon S. acidocaldarius differs from that in E. coli in that it is not regulated by adenylation. ; GO: 0004356 glutamate-ammonia ligase activity, 0009399 nitrogen fixation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1018.82 Aligned_cols=430 Identities=31% Similarity=0.484 Sum_probs=398.9
Q ss_pred HHHHHHHHH-CCCCEEEEEEECCCCCEEEEEEEHHHHH------HCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 999999971-7983999999788983312676198873------015677361000002427743466555778887789
Q gi|254780503|r 18 EQAAKWLKD-NRIEDVECITPDLAGIPRGKMMPSSKFI------SNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLR 90 (461)
Q Consensus 18 ~~v~~~l~~-~~I~~V~v~~~Dl~G~~RgK~vp~~~f~------~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~ 90 (461)
T Consensus 1 ~~~~~~~keG~~VkfV~l~F~Di~G~~~~~~iP~~~~~~i~~~~~~fe~-------G~~FDGSSi~G---f~~IeeSDM~ 70 (486)
T TIGR00653 1 EEVLKLIKEGENVKFVDLRFTDIKGKLQHVEIPASALDDIDELEEAFEE-------GIMFDGSSIRG---FQGIEESDML 70 (486)
T ss_pred CCHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHC-------CCCCCCCCCCC---CCCHHHHCCC
T ss_conf 9202365078805799999863788410168883132117888888642-------63446612057---4661110220
Q ss_pred EEEECCCCEECCCCCCC--EEEEEEECCCC-CCCCCCCCHHHHHHHHHHHHH--CCCCCEEECCCCCEEEEECCCCCCCC
Q ss_conf 99600124538788877--09999740335-752123425777899999861--02764023224417998216788887
Q gi|254780503|r 91 LSPDLSTLSIVPWEMDP--TAQIVCDVVDY-NGKEVTYTPRNVLKRVLNFYA--QNELKPIIAPEIEFYLIAKNEDPDYP 165 (461)
Q Consensus 91 l~PD~~Tl~~lPw~~~~--~a~vl~~~~~~-dG~p~~~~PR~iLkr~i~~l~--~~G~~~~~g~E~EF~L~~~~~~~~~~ 165 (461)
T Consensus 71 l~PDp~T~~i~Pw~~~~~~~~~~ic~vY~p~~~~~y~rDPR~~A~rae~~L~~~~~g~~~~fGPEpEFFlFd~~~~~~~~ 150 (486)
T TIGR00653 71 LKPDPSTAVIDPWRAEKKKTLRVICDVYEPVTGEPYERDPRSIAKRAEEYLKSTGIGDTAYFGPEPEFFLFDSIEFGSLS 150 (486)
T ss_pred CCCCCCCEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCC
T ss_conf 10273631674531688857999988730777732788847899999998621467737786587312100546578655
Q ss_pred -----------------CCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC-CCCE
Q ss_conf -----------------778778----888776678777766544289999989976786311022101012786-4201
Q gi|254780503|r 166 -----------------LQPPKG----RSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPA-QFEI 223 (461)
Q Consensus 166 -----------------~~~~~~----~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpG-Q~Ei 223 (461)
T Consensus 151 n~~~~~~d~~eG~WN~~r~~e~g~~~n~g~~~~~kgGYF~v~P~D~~~D~R~e~v~~L~~~G~~~E~~HHEVA~aGQ~Ei 230 (486)
T TIGR00653 151 NSSYYEVDSEEGAWNTGREYEGGSELNSGYKPRDKGGYFPVPPTDTAVDIRREMVLTLEQLGLDVEVHHHEVATAGQHEI 230 (486)
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEE
T ss_conf 54421144443555868446888861246034777777587689888899999999998659828886010147874253
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCCCCC---CCHHH
Q ss_conf 112665211378999999999999863066033112321135662689998763136----87423358865---52156
Q gi|254780503|r 224 NIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIK----SNQNIFSNPDG---SETDN 296 (461)
Q Consensus 224 ~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~----~g~n~f~~~~~---~ls~~ 296 (461)
T Consensus 231 d~kf~~l~~~AD~~~~yKyvvK~vA~~~Gk~ATFMPKPlfGdNGSGMH~H~SLW--K~ePf~GenlF~g~~~~y~GLSe~ 308 (486)
T TIGR00653 231 DFKFDTLLKTADDIQTYKYVVKNVAKKHGKTATFMPKPLFGDNGSGMHCHQSLW--KGEPFDGENLFAGEEGEYAGLSET 308 (486)
T ss_pred ECCHHHHHHHHCCEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEEE--ECCCCCCCEECCCCCCCCCCHHHH
T ss_conf 046478987405045147899899998388797458788772668554835563--277888840006858876543588
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 6654577764223212220766101344204655754334243345003650223--88652035303587799899999
Q gi|254780503|r 297 FRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLA 374 (461)
Q Consensus 297 ~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~la 374 (461)
T Consensus 309 ALyyIGGiLkHA~AL~A~tNPTvNSYKRLVPGYEAPv~lays~~NRSA~iRIP~~~~n~kA~R~E~R~PDPs~NPYLAFA 388 (486)
T TIGR00653 309 ALYYIGGILKHAKALAAFTNPTVNSYKRLVPGYEAPVYLAYSARNRSALIRIPASRGNPKATRIEVRFPDPSANPYLAFA 388 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCEECCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 88875208777788889765660552236886121023021677875258740164088336998707887656789999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC---------CHHCCCCCHHHHHHHHHCC---HHHHHHCCHHHHHHHHHHHH-HH
Q ss_conf 99999999898468887433453000---------3110478989999998659---89887355899999999999-99
Q gi|254780503|r 375 ASLACGLLGILQKIEPTPPTMKSANQ---------EAINLPRGLLEAVTLLENT---SHFKDIFGSQFIDMYANLKR-NE 441 (461)
Q Consensus 375 ail~agl~Gi~~~l~p~~~~~~~~~~---------~~~~LP~sL~eAl~~l~~d---~~l~~~lg~~~v~~~~~~k~-~E 441 (461)
T Consensus 389 A~LmAGLDGIKnKI~PgeP~d~n~Y~l~peE~~e~GI~~lP~~L~eAL~~Le~D~Ef~~~~~vfg~~~~e~fie~Kr~~E 468 (486)
T TIGR00653 389 ALLMAGLDGIKNKIDPGEPVDKNLYELSPEELRELGIPQLPGSLEEALDELESDHEFLVLKGVFGEEFIEAFIELKREKE 468 (486)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99986201200145878731043335898999738901105679999999731462002203203789999987653025
Q ss_pred HHHHHCCCCHHHHHHHHH
Q ss_conf 999863899789987631
Q gi|254780503|r 442 FETFMQVISPWEREFLLL 459 (461)
Q Consensus 442 ~~~~~~~vt~wE~~~yl~ 459 (461)
T Consensus 469 ~~~~r~~phP~Ef~~Y~~ 486 (486)
T TIGR00653 469 WDDYRLRPHPWEFEKYYD 486 (486)
T ss_pred CCHHCCCCCCHHHHCCCC
T ss_conf 100036774012201159