HHsearch alignment for GI: 254780503 and conserved domain: TIGR03105
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=0 Score=930.70 Aligned_cols=419 Identities=32% Similarity=0.470 Sum_probs=378.7
Q ss_pred HHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCE
Q ss_conf 99999717983999999788983312676198873015677361000002427743466555778887789996001245
Q gi|254780503|r 20 AAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLS 99 (461)
Q Consensus 20 v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~~Tl~ 99 (461)
T Consensus 1 ~~~~i~~~~I~~v~~~~~D~~G~~RgK~vp~~~~~~~~~~G~~f~-------~~~~~~--~~~~~~~~D~~~~PD~~Tl~ 71 (435)
T TIGR03105 1 LQALARDKGIKYFLASFVDLHGVQKAKLVPAEAIDHMATGGAGFA-------GFAAWG--LGQSPADPDLMAIPDLSSLT 71 (435)
T ss_pred CHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCCE-------EECHHH--CCCCCCCCCEEEEECCCCEE
T ss_conf 966885589859999999999957899986999999985899710-------124321--37899988689997578307
Q ss_pred ECCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 38788877099997403357521234257778999998610276402322441799821678888777877888877667
Q gi|254780503|r 100 IVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILG 179 (461)
Q Consensus 100 ~lPw~~~~~a~vl~~~~~~dG~p~~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~ 179 (461)
T Consensus 72 ~lPw~-p~~a~v~~d~~-~dG~p~~~~PR~~L~~~~~~~~~~G~~~~~g~ElEF~l~~~~~~~~~~~~---~--~~~~~~ 144 (435)
T TIGR03105 72 QLPWQ-PGVAWVAADLH-VNGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSLSIA---D--RADTLA 144 (435)
T ss_pred ECCCC-CCEEEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCCCCCC---C--CCCCCC
T ss_conf 78888-98489999974-08988886979999999999996599289767627999821688985567---8--777677
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 87777665442899999899767863110221010127864201112665211378999999999999863066033112
Q gi|254780503|r 180 GQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMA 259 (461)
Q Consensus 180 ~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp 259 (461)
T Consensus 145 ~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~K~~ik~iA~~~G~~ATFMp 224 (435)
T TIGR03105 145 KPCYDQRGLMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMP 224 (435)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 88667200101679999999999977997188664657981699726799899999999999999999998099899703
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC------C
Q ss_conf 32113566268999876313687423358865----5215666545777642232122207661013442046------5
Q gi|254780503|r 260 KPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG----SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLD------M 329 (461)
Q Consensus 260 KP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~----~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~------~ 329 (461)
T Consensus 225 KP~~~~~GsG~HiH~SL~d-~~g~n~f~d~~~~~~~glS~~~~~fiaGlL~~~~~l~a~~~Pt~NSYkRl~~~~~~~~~~ 303 (435)
T TIGR03105 225 KPFADLTGNGCHFHLSLWD-EDGRNLFADDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYKRLNAPRTTSGAT 303 (435)
T ss_pred CCCCCCCCCEEEEEEEEEC-CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 1378999870038986775-999760368987665554599999999999861323150147765211156886565765
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC------HH
Q ss_conf 575433424334500365022388652035303587799899999999999998984688874334530003------11
Q gi|254780503|r 330 GCPVNNAWGYDNRTTAFRIPFSDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQE------AI 403 (461)
Q Consensus 330 ~ap~~~~WG~~NR~~~iRip~~~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~~------~~ 403 (461)
T Consensus 304 waP~~~~WG~~NR~~~iRip~~----~riE~R~~da~aNPYL~lAailaAGl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~ 379 (435)
T TIGR03105 304 WAPNFISYGGNNRTHMVRIPDP----GRFELRLADGAANPYLAQAAILAAGLDGIERKLDPGPPRDINLYAEELAARGVE 379 (435)
T ss_pred CCCCEEEECCCCCCCEEEECCC----CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 5762023135776550782378----713644899887989999999998887886589999977788655630126856
Q ss_pred CCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 04789899999986598988735589999999999999999863899789987631
Q gi|254780503|r 404 NLPRGLLEAVTLLENTSHFKDIFGSQFIDMYANLKRNEFETFMQVISPWEREFLLL 459 (461)
Q Consensus 404 ~LP~sL~eAl~~l~~d~~l~~~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~ 459 (461)
T Consensus 380 ~LP~sL~eAl~~l~~~~~l~~~lg~~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yle 435 (435)
T TIGR03105 380 TLPQNLLEALRALEADPLLAEALGAEFVDEFLKLKRQEWEEYHRHVSDWEIDRYLD 435 (435)
T ss_pred CCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 66889999999997590987854999999999999999999977999999985149