Query gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 461 No_of_seqs 147 out of 2566 Neff 7.4 Searched_HMMs 33803 Date Wed Jun 1 17:09:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780503.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1f52_A Glutamine synthetase; 100.0 0 0 606.1 16.9 277 122-400 1-300 (301) 2 >2bvc_A Glutamine synthetase 1 100.0 0 0 588.2 18.7 274 126-400 1-301 (302) 3 >3fky_A Glutamine synthetase; 100.0 0 0 537.7 12.1 259 125-398 2-263 (264) 4 >2ojw_A Glutamine synthetase; 100.0 0 0 513.9 11.2 249 124-385 1-255 (256) 5 >2d3a_A Glutamine synthetase; 100.0 0 0 493.3 13.2 244 126-382 1-249 (252) 6 >2j9i_A Glutamate-ammonia liga 100.0 0 0 336.7 7.3 147 249-398 20-168 (168) 7 >2j9i_A Glutamate-ammonia liga 99.8 7.5E-23 2.2E-27 169.7 -0.8 86 177-262 9-95 (95) 8 >2bvc_A Glutamine synthetase 1 99.8 2E-20 6E-25 153.7 9.5 102 14-129 11-113 (114) 9 >1f52_A Glutamine synthetase; 99.8 8.6E-20 2.5E-24 149.6 9.8 96 16-121 1-97 (98) 10 >2j9i_A Glutamate-ammonia liga 99.8 5.9E-19 1.8E-23 144.1 9.4 93 16-118 1-94 (95) 11 >2j9i_A Glutamate-ammonia liga 99.2 1.5E-11 4.4E-16 95.4 4.1 59 399-460 2-61 (63) 12 >1r8g_A Hypothetical protein Y 98.3 2.5E-06 7.3E-11 61.1 7.3 201 142-386 9-266 (372) 13 >2gwd_A Glutamate cysteine lig 98.3 5.4E-06 1.6E-10 58.8 9.1 156 128-318 18-213 (422) 14 >3fky_A Glutamine synthetase; 98.1 1.3E-05 4E-10 56.3 8.2 95 18-123 10-106 (106) 15 >2d3a_A Glutamine synthetase; 97.9 5.1E-05 1.5E-09 52.4 7.5 88 26-124 15-103 (104) 16 >2ojw_A Glutamine synthetase; 97.8 7.2E-05 2.1E-09 51.5 7.0 81 31-122 5-86 (87) 17 >1va6_A Glutamate--cysteine li 95.9 0.0015 4.3E-08 42.9 -0.2 182 144-373 3-236 (254) 18 >2d3a_A Glutamine synthetase; 95.0 0.012 3.6E-07 36.8 2.0 58 295-352 161-233 (252) 19 >1vjz_A Endoglucanase; TM1752, 43.9 20 0.00059 15.7 4.5 107 126-256 33-141 (341) 20 >1nxi_A Conserved hypothetical 41.3 22 0.00065 15.4 8.3 93 127-252 17-112 (132) 21 >1x3l_A Hypothetical protein P 40.8 11 0.00033 17.3 1.1 46 222-267 8-54 (196) 22 >1ni3_A YCHF GTPase, YCHF GTP- 32.7 23 0.00068 15.3 1.7 33 17-49 20-52 (149) 23 >1v5s_A MAP/microtubule affini 32.4 30 0.00089 14.5 6.4 72 184-255 32-122 (126) 24 >1eej_A Thiol:disulfide interc 30.7 27 0.0008 14.8 1.8 31 196-226 3-33 (49) 25 >1zpv_A ACT domain protein; st 30.7 32 0.00095 14.3 3.7 70 193-264 17-86 (91) 26 >3cny_A Inositol catabolism pr 28.8 23 0.00068 15.3 1.1 77 189-265 86-167 (301) 27 >2j6v_A UV endonuclease, UVDE; 26.5 38 0.0011 13.8 5.1 23 244-266 108-130 (301) 28 >1vkz_A Phosphoribosylamine--g 24.7 41 0.0012 13.6 2.4 87 148-234 103-206 (321) 29 >3eua_A Putative fructose-amin 22.9 44 0.0013 13.4 2.4 47 413-461 32-78 (80) 30 >2o36_A ThiMet oligopeptidase; 22.7 44 0.0013 13.4 2.5 34 426-459 3-40 (84) 31 >2o3e_A Neurolysin; thermolysi 22.1 46 0.0014 13.3 2.8 34 426-459 3-40 (86) 32 >1lml_A Leishmanolysin; metall 21.0 48 0.0014 13.2 3.3 37 236-272 156-194 (197) 33 >1t3b_A Thiol:disulfide interc 20.5 32 0.00096 14.3 0.6 30 197-226 4-33 (49) 34 >2r6u_A Uncharacterized protei 20.4 49 0.0015 13.1 4.2 95 131-227 36-133 (148) No 1 >>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:99-399) Probab=100.00 E-value=0 Score=606.11 Aligned_cols=277 Identities=29% Similarity=0.443 Sum_probs=248.9 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCC--EEECCCCCEEEEECCCCCCCCC-----------------CC-CCCCCCCCCCCCC Q ss_conf 12342577789999986102764--0232244179982167888877-----------------78-7788887766787 Q gi|254780503|r 122 EVTYTPRNVLKRVLNFYAQNELK--PIIAPEIEFYLIAKNEDPDYPL-----------------QP-PKGRSGRSILGGQ 181 (461) Q Consensus 122 p~~~~PR~iLkr~i~~l~~~G~~--~~~g~E~EF~L~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~ 181 (461) .|+.|||++|||++++++++|+. +++|+|+|||||++..+..... .. .......+..+++ T Consensus 1 ~~~~~pR~vLkr~~~~l~~~G~~~~~~~g~E~EF~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (301) T 1f52_A 1 GYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGG 80 (301) T ss_dssp CCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCC T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 58889699999999999981996313434534799974443455666663344641113567876667887876576653 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH-HCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC Q ss_conf 7776654428999998997678631102210-101278642011126652113789999999999998630660331123 Q gi|254780503|r 182 SYSIMGINEFDEIIDDIWKFSEKQGLEIDTL-IHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAK 260 (461) Q Consensus 182 ~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~-~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK 260 (461) +|++.+.+..+++++++++.|+++||+|+++ |+|+||||+||++.|+++|++||+++++|++||+||++||+.|||||| T Consensus 81 ~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~h~E~~~gQ~Ei~~~~~~~l~aAD~~~~~r~~ik~vA~~~G~~atFmpK 160 (301) T 1f52_A 81 YFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK 160 (301) T ss_dssp SSBCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC T ss_conf 02677420078999999999997699717755022367877995067878888999999999999999984987897166 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC Q ss_conf 211356626899987631368742335-8865521566654577764223212220766101344204655754334243 Q gi|254780503|r 261 PMQNYPGSAMHIHQSVLDIKSNQNIFS-NPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGY 339 (461) Q Consensus 261 P~~~~~GsG~H~h~SL~d~~~g~n~f~-~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~ 339 (461) |+.+.+|||||+|+|||+ + +.|+|. ++.+++|+.+++||||||+|++++++|++||+||||||+|++|||++++||. T Consensus 161 P~~~~~Gsg~H~h~Sl~~-~-~~n~~~~~~~~~lS~~~~~fiaGil~h~~~l~a~~~pt~nSY~Rl~~~~~ap~~~~wG~ 238 (301) T 1f52_A 161 PMFGDNGSGMHCHMSLAK-N-GTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSA 238 (301) T ss_dssp SSTTSCCCCEEEEEEEEE-T-TEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEES T ss_pred CCCCCCCCEEEEEECCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEECC T ss_conf 679999661479972456-9-98667777765522999999999999999977643799863321579865777531236 Q ss_pred CCCCEEEEECCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 345003650223-8865203530358779989999999999999898468887433453000 Q gi|254780503|r 340 DNRTTAFRIPFS-DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ 400 (461) Q Consensus 340 ~NR~~~iRip~~-~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~ 400 (461) +||+++||||.. +.+++|||+|++|++|||||++|+||+||++||+++++||+|+.+|+|+ T Consensus 239 ~NR~a~iRvp~~~~~~~~r~E~R~~da~aNPYl~lAail~agl~Gi~~~l~~~~~~~~~~~e 300 (301) T 1f52_A 239 RNRSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYD 300 (301) T ss_dssp SCTTEEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSS T ss_pred CCCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 67753088303689877667863788887899999999999999998479999888786244 No 2 >>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:115-416) Probab=100.00 E-value=0 Score=588.19 Aligned_cols=274 Identities=30% Similarity=0.473 Sum_probs=245.2 Q ss_pred CHHHHHHHHHHHHHCCCCC--EEECCCCCEEEEECCC---------------------CCCCCCCCCCCCCCCCCCCCCC Q ss_conf 2577789999986102764--0232244179982167---------------------8888777877888877667877 Q gi|254780503|r 126 TPRNVLKRVLNFYAQNELK--PIIAPEIEFYLIAKNE---------------------DPDYPLQPPKGRSGRSILGGQS 182 (461) Q Consensus 126 ~PR~iLkr~i~~l~~~G~~--~~~g~E~EF~L~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 182 (461) |||++||+++++++++|+. +++|+|+|||||++.. +.................+..+ T Consensus 1 DPR~~Lk~~~~~l~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (302) T 2bvc_A 1 DPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGGY 80 (302) T ss_dssp CHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTCCS T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 72016999999999749761453122012552133333555578766654223455678743467899878665557776 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHC-CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC Q ss_conf 77665442899999899767863110221010-12786420111266521137899999999999986306603311232 Q gi|254780503|r 183 YSIMGINEFDEIIDDIWKFSEKQGLEIDTLIH-EEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKP 261 (461) Q Consensus 183 y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~-E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP 261 (461) |++.+.+..++|+++|++.|+++||+||++|| |.+|||+|+++.|++++++||+++++|++||+||++||++||||||| T Consensus 81 ~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~hee~~~gQ~Ei~~~~~~~l~aaD~~~~~r~~ik~vA~~~G~~atFmpKP 160 (302) T 2bvc_A 81 FPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKP 160 (302) T ss_dssp CBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCS T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 54540356799999999778754971465203455563344256534005777488999999999999639647786420 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC Q ss_conf 1135662689998763136874233588-655215666545777642232122207661013442046557543342433 Q gi|254780503|r 262 MQNYPGSAMHIHQSVLDIKSNQNIFSNP-DGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYD 340 (461) Q Consensus 262 ~~~~~GsG~H~h~SL~d~~~g~n~f~~~-~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~ 340 (461) +.+.+|||||+|+|||+ .++.|+|.++ .+++|+++++||||||+|+|++++|++||+||||||+|++|||++++||.+ T Consensus 161 ~~~~~Gsg~H~h~SL~~-~~~~~~~~~~~~~~ls~~~~~fiaGll~h~~~l~al~aptvnSY~Rl~~~~~ap~~~~WG~~ 239 (302) T 2bvc_A 161 LFGDNGSGMHCHQSLWK-DGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQR 239 (302) T ss_dssp STTSCCCCEEEEEEEEE-TTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEET T ss_pred CCCCCCCCEEEEEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHEEEECCCCCCCCCCCCCCCCEEEEECCC T ss_conf 68988766007888641-79886443344333379999999999861633311121465655668999757246630366 Q ss_pred CCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 45003650223--8865203530358779989999999999999898468887433453000 Q gi|254780503|r 341 NRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ 400 (461) Q Consensus 341 NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~ 400 (461) ||+++||||.+ +++.+|||+|+||++|||||++||||+||++||+++++|++|+.+++++ T Consensus 240 NR~~~iRv~~~~~~~~~~r~E~R~~da~aNPYlalAailaAgl~Gi~~~~~~~~p~~~~~~~ 301 (302) T 2bvc_A 240 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYE 301 (302) T ss_dssp CTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGG T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH T ss_conf 54434422333678766168835899443588999999999999998089999967786012 No 3 >>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} (A:107-370) Probab=100.00 E-value=0 Score=537.71 Aligned_cols=259 Identities=18% Similarity=0.149 Sum_probs=226.8 Q ss_pred CCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 42577789999986102764023224417998216788887778778888776678777766544289999989976786 Q gi|254780503|r 125 YTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEK 204 (461) Q Consensus 125 ~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~ 204 (461) .|||++|+|++++++ |+++++|+|+|||||+.+++..... .........+..+|+....++.+++++++++.|+. T Consensus 2 ~~pR~~L~~~~~~~~--g~~~~~g~E~EF~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 76 (264) T 3fky_A 2 FNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYDDVYGWP---KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLY 76 (264) T ss_dssp TCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTSSBTTCC---TTSBCSCSSSCTTCCSTTTCSCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHH--HCCCEECCCEEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 015999999998787--4474671441389897788754577---76766765320123577751035799999999874 Q ss_pred HHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC-HHHHHHHHHHHCCCCC Q ss_conf 311022101012786420111266521137899999999999986306603311232113566-2689998763136874 Q gi|254780503|r 205 QGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPG-SAMHIHQSVLDIKSNQ 283 (461) Q Consensus 205 ~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~G-sG~H~h~SL~d~~~g~ 283 (461) +||+||++|+|+|||||||++.|++++++||+++++|++||+||++||+.|||||||+.+..| ||+|.|+|+++ .++ T Consensus 77 ~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aaD~~~~~r~~ik~iA~~~g~~atFmpKP~~~~~~~~~~h~~~s~~~-~~~- 154 (264) T 3fky_A 77 AGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKE-MRQ- 154 (264) T ss_dssp HTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSSSSCCCBEEEEEECHH-HHS- T ss_pred CCCCCEEECCCCCCCEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEECCCCC-CCC- T ss_conf 245420110234554144400001001034088999999999999819807875413457667876132044000-458- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEEE Q ss_conf 23358865521566654577764223212220766101344204655754334243345003650223--8865203530 Q gi|254780503|r 284 NIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIENR 361 (461) Q Consensus 284 n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~R 361 (461) ..+++.+++||||||+|++++++|++||+||||||.|++|||++++||.+||+++||||.. +++++|||+| T Consensus 155 -------~~~~~~~~~~iaGll~h~~~~~~~~~pt~nsY~Rl~~~~~ap~~~~wg~~NR~~~iRi~~~~~~~~~~r~E~R 227 (264) T 3fky_A 155 -------PGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDR 227 (264) T ss_dssp -------SSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHHHHHTCCCEEEC T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEECCCCCCEEEEECCCCCCCCCCEEEEC T ss_conf -------8857999999987556567664004656640532666576752355526788567996887788876089976 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 3587799899999999999998984688874334530 Q gi|254780503|r 362 LPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA 398 (461) Q Consensus 362 ~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~ 398 (461) +||++|||||++|++|+|||+||+++++|+ |+++|+ T Consensus 228 ~~d~~aNPYl~~aa~l~agl~Gi~~~~~~~-p~~~~a 263 (264) T 3fky_A 228 RPASNIDPYLVTGIMCETVCGAIDNADMTK-EFERES 263 (264) T ss_dssp CCBTTCCHHHHHHHHHHHHHCCBTTBCTTT-CCC--- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCC T ss_conf 877777889999999999987875489998-567778 No 4 >>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A (A:129-384) Probab=100.00 E-value=0 Score=513.92 Aligned_cols=249 Identities=19% Similarity=0.170 Sum_probs=219.8 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 34257778999998610276402322441799821678888777877888877667877776654428999998997678 Q gi|254780503|r 124 TYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSE 203 (461) Q Consensus 124 ~~~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~ 203 (461) +.|||++|||++++++++|+. +|+|+|||||+++++..... .........+.++|+..+.++.++++++|++.|+ T Consensus 1 e~~pR~~Lkr~~~~~~~~g~~--~g~E~EF~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 75 (256) T 2ojw_A 1 ETNLRHTCKRIMDMVSNQHPW--FGMEQEYTLMGTDGHPFGWP---SNGFPGPQGPYYCGVGADRAYGRDIVEAHYRACL 75 (256) T ss_dssp TTCCHHHHHHHHHHTGGGCCE--EEEEEEEEEEC-CCSBTTCC---TTSCCSCSSSCTTCCSTTTCCCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCE--EEEEEEEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 546999999999875412743--30000479985356666776---6788887766444665202465899999999875 Q ss_pred HHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC-CCCCCHHHHHHHHHHHCCCC Q ss_conf 63110221010127864201112665211378999999999999863066033112321-13566268999876313687 Q gi|254780503|r 204 KQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPM-QNYPGSAMHIHQSVLDIKSN 282 (461) Q Consensus 204 ~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~-~~~~GsG~H~h~SL~d~~~g 282 (461) ++||++|++|+|+|||||||++.|+++++|||+++++|++||+||++||++|||||||+ .+.+|||+|+|+|||+.. + T Consensus 76 ~~Gi~ie~~h~E~g~gQ~Ei~~~~~~~l~aaD~~~~~r~~ik~vA~~~gl~atFmpKP~~~~~~gsg~H~h~Sl~~~~-~ 154 (256) T 2ojw_A 76 YAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMR-E 154 (256) T ss_dssp HHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSCSSSCCCBEEEEEECHHHH-S T ss_pred HCCCCEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECCCCCCC-C T ss_conf 305311023114577506870023313345679999999999999984987886213567876667404431233446-7 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHCCCCCCCCCCC--CCCCCCEEEEECCC--CCCCCE Q ss_conf 42335886552156665457776422321222-07661013442046557543342--43345003650223--886520 Q gi|254780503|r 283 QNIFSNPDGSETDNFRYFIGGLQKYIPNALVM-LAPYGNSYRRLVLDMGCPVNNAW--GYDNRTTAFRIPFS--DAKTKR 357 (461) Q Consensus 283 ~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~-~~PtvNSYkRl~p~~~ap~~~~W--G~~NR~~~iRip~~--~~~~~r 357 (461) +|+ +++...+|++|+++|+.+++++ ++||+||||||+|+.|||+.++| |.+||+++||||.. +++++| T Consensus 155 ~~~-------~~~~~~~~~~g~~~h~~~~~~~~~~ptvnsY~Rl~~~~~ap~~~~~s~G~~NR~~~iRi~~~~~~~~~~r 227 (256) T 2ojw_A 155 ENG-------LKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGY 227 (256) T ss_dssp TTT-------HHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEEETCTTSSEEECHHHHHHTCSC T ss_pred CCC-------CCCCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCE T ss_conf 788-------6555213444106599999976057760036542898658575632741688876689687678888618 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 3530358779989999999999999898 Q gi|254780503|r 358 IENRLPSSDTNPYLVLAASLACGLLGIL 385 (461) Q Consensus 358 iE~R~~d~~aNPYL~laail~agl~Gi~ 385 (461) ||+|++|++|||||++|+||+||||||+ T Consensus 228 ~E~R~~d~~aNPYl~laail~agl~Gi~ 255 (256) T 2ojw_A 228 FEDRRPSANCDPFSVTEALIRTCLLNET 255 (256) T ss_dssp EEECCCBTTCCHHHHHHHHHHHHTSCCC T ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 9978977887899999999999756878 No 5 >>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:105-356) Probab=100.00 E-value=0 Score=493.29 Aligned_cols=244 Identities=18% Similarity=0.161 Sum_probs=218.9 Q ss_pred CHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 25777899999861027640232244179982167888877787788887766787777665442899999899767863 Q gi|254780503|r 126 TPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQ 205 (461) Q Consensus 126 ~PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~ 205 (461) |||++|||++++++++|+++++|+|+|||||+++++.... ........+...+.+|++.+.++.++++++|++.|+.+ T Consensus 1 DPR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 78 (252) T 2d3a_A 1 NKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLG--WPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYA 78 (252) T ss_dssp CCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTT--SCTTSBCSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 6278899999998746980676141389985135678887--65457875446754554310013367899999877631 Q ss_pred HCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC-CCHHHHHHHHHHHCCCCCC Q ss_conf 110221010127864201112665211378999999999999863066033112321135-6626899987631368742 Q gi|254780503|r 206 GLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNY-PGSAMHIHQSVLDIKSNQN 284 (461) Q Consensus 206 Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~-~GsG~H~h~SL~d~~~g~n 284 (461) ||+|+++|+|+|||||||++.|++++++||+++++|++||+||++||+.|||||||+.+. .|||+|+|+|+||.. + T Consensus 79 Gi~v~~~~~E~g~gQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hgl~atFmpKP~~~~~~~~~~h~h~s~~~~~-~-- 155 (252) T 2d3a_A 79 GINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMR-K-- 155 (252) T ss_dssp TCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSCSSSCCCBEEEEEECTTTS-S-- T ss_pred CCCCCCCCCCCCCCCEEEEEECCCHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCCCCC-C-- T ss_conf 6453422236688637998621410012148999999999999982988996204555777777027640121356-5-- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCC--CCCCCEEEE Q ss_conf 33588655215666545777642232122207661013442046--55754334243345003650223--886520353 Q gi|254780503|r 285 IFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLD--MGCPVNNAWGYDNRTTAFRIPFS--DAKTKRIEN 360 (461) Q Consensus 285 ~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~--~~ap~~~~WG~~NR~~~iRip~~--~~~~~riE~ 360 (461) .+....++++||+.|+++++++++|++|||+||+++ +|||++++||.+||+++||||.+ ++.++|||+ T Consensus 156 --------~~~~~~~~~~~i~~~~~~~~a~~a~~~~sy~r~~~~~~~~ap~~~~WG~~NR~~~vRv~~~~~~~~~~r~E~ 227 (252) T 2d3a_A 156 --------EGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFED 227 (252) T ss_dssp --------TTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHHHHHTTCCCEEE T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEE T ss_conf --------422355899999988867888722578606654698657887732772467877798577778787628997 Q ss_pred ECCCCCCCHHHHHHHHHHHHHH Q ss_conf 0358779989999999999999 Q gi|254780503|r 361 RLPSSDTNPYLVLAASLACGLL 382 (461) Q Consensus 361 R~~d~~aNPYL~laail~agl~ 382 (461) |++|++|||||++|++|+|||| T Consensus 228 R~~d~~aNPYl~laa~laagLd 249 (252) T 2d3a_A 228 RRPASNMDPYVVTSMIAETTIV 249 (252) T ss_dssp CCCBTTCCHHHHHHHHHHHHTT T ss_pred CCCCCCCCHHHHHHHHHHHHCC T ss_conf 9877877899999999997564 No 6 >>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:96-127,A:223-358) Probab=100.00 E-value=0 Score=336.75 Aligned_cols=147 Identities=25% Similarity=0.318 Sum_probs=137.1 Q ss_pred HHHCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHC Q ss_conf 6306603311232113566268999876313687423358865-521566654577764223212220766101344204 Q gi|254780503|r 249 FKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG-SETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVL 327 (461) Q Consensus 249 ~~~G~~atFmpKP~~~~~GsG~H~h~SL~d~~~g~n~f~~~~~-~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p 327 (461) ..-|+...|.+. |.+.+|||||+|+|||| +|+|+|+++++ ++|+.+++||||||+|++++++|++||+||||||+| T Consensus 20 ~~~~~~~~~~~~-~~~~~GSG~H~H~SL~~--~g~N~f~~~~~~~lS~~~~~fiaGiL~h~~~l~a~~aPtvnSY~Rl~p 96 (168) T 2j9i_A 20 AAAGLLSAFIAD-FAAAAGAGSHSIWDVGA--AGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAAAAAAA 96 (168) T ss_dssp SCSEECCEECCC-CTTSCCCBCCEEECEEE--TTEESSCSSSGGGCCHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTSS T ss_pred CCCEEEEEEEEE-ECCCCCCCEEEEEECCC--CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 983687631678-82123344279995348--998766899975431999998588662123211111111111111111 Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCC-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 6557543342433450036502238-8652035303587799899999999999998984688874334530 Q gi|254780503|r 328 DMGCPVNNAWGYDNRTTAFRIPFSD-AKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA 398 (461) Q Consensus 328 ~~~ap~~~~WG~~NR~~~iRip~~~-~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~ 398 (461) ++|||+++|||.+||+++||||... ++.+|||+|++|+++||||++|+||+||++||+++++|++|+.+|+ T Consensus 97 ~~~AP~~vsWG~~NRsaaiRIp~~~~~~~~riE~R~~da~aNPYL~lAail~Agl~GI~~~l~~~~p~~gda 168 (168) T 2j9i_A 97 GAAAAAATAWGAAAAACALNIAAAAAAKGAQIENKAGAAAANPYLVLAATVAAGLDGIQSAGAAAGAAAADA 168 (168) T ss_dssp STTCCCEEEEESSCTTEEEEEECCSSGGGCEEEECSCBTTSCHHHHHHHHHHHHHHHHHHTCCCCSCBCSSS T ss_pred CCCCCCCEEECCCCCEEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 111101405437665279998502477764367437994522799999999999999870899989767775 No 7 >>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:128-222) Probab=99.84 E-value=7.5e-23 Score=169.70 Aligned_cols=86 Identities=13% Similarity=-0.014 Sum_probs=77.3 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCE Q ss_conf 6678777766544289999989976786311022101012786420111266-521137899999999999986306603 Q gi|254780503|r 177 ILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHG-DPLKLADQVFLFKRTIREAAFKHDIYA 255 (461) Q Consensus 177 ~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~a 255 (461) ...+.+|.........++++++.+.|.++||+|+++|+|+||||||+++.|+ +++++||+++++|.+||+||++||+.| T Consensus 9 ~~~~~~y~~~~~~~~~~~l~~~~~~l~~~Gi~ve~~~~E~g~gQ~Ei~~~~~~~~l~aAD~~~~~r~~vk~vA~~~Gl~a 88 (95) T 2j9i_A 9 INSKTISFPASTTAAAADQPQEAAAGGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIA 88 (95) T ss_dssp EECSSCEEEECCCTTCTTGGGSCCTTCCCSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 66778888877303445479999988855876312047663421111223301677888999999999999999869964 Q ss_pred EECCCCC Q ss_conf 3112321 Q gi|254780503|r 256 TFMAKPM 262 (461) Q Consensus 256 tFmpKP~ 262 (461) ||||||. T Consensus 89 TFmpKPs 95 (95) T 2j9i_A 89 SAAAAAA 95 (95) T ss_dssp ECCTTSS T ss_pred CCCCCCC T ss_conf 3332111 No 8 >>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:1-114) Probab=99.83 E-value=2e-20 Score=153.70 Aligned_cols=102 Identities=28% Similarity=0.346 Sum_probs=87.2 Q ss_pred CCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHH-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 899899999997179839999997889833126761988730-1567736100000242774346655577888778999 Q gi|254780503|r 14 VKNWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFIS-NIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLS 92 (461) Q Consensus 14 ~~~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~-~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~ 92 (461) ..+.+++.++|++++|++|+++|+|++|++|||.||+++|.+ ....|+. ++++++.+ +...+++|++++ T Consensus 11 ~~~~~~i~~~l~~~~I~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~g~~-------f~~s~i~g---~~~~~~~D~~l~ 80 (114) T 2bvc_A 11 EKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLA-------FDGSSIRG---FQSIHESDMLLL 80 (114) T ss_dssp -CCHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCSHHHHHTCEE-------EETTSSTT---SCCGGGCEEEEE T ss_pred CCCHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCE-------EECCCCCC---CCCCCCCCEEEE T ss_conf 68999999999878982999999999996789999899988999978990-------47757124---667887878999 Q ss_pred EECCCCEECCCCCCCEEEEEEECCCCCCCCCCCCHHH Q ss_conf 6001245387888770999974033575212342577 Q gi|254780503|r 93 PDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRN 129 (461) Q Consensus 93 PD~~Tl~~lPw~~~~~a~vl~~~~~~dG~p~~~~PR~ 129 (461) ||++|++++||..+++|+|+|++++ |+..|||+ T Consensus 81 PD~~T~~~~Pw~~~~~a~v~~d~~~----p~~~~PR~ 113 (114) T 2bvc_A 81 PDPETARIDPFRAAKTLNINFFVHD----PFTLEPYS 113 (114) T ss_dssp ECGGGCEECSSCSSCEEEEEEEEEC----TTTCCBCT T ss_pred ECCCCCEECCCCCCCEEEEEEEEEC----CCCCCCCC T ss_conf 8346328897479952899999742----88888066 No 9 >>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} (A:1-98) Probab=99.82 E-value=8.6e-20 Score=149.59 Aligned_cols=96 Identities=22% Similarity=0.319 Sum_probs=82.9 Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 98999999971798399999978898331267619887301-56773610000024277434665557788877899960 Q gi|254780503|r 16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISN-IPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPD 94 (461) Q Consensus 16 ~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD 94 (461) |++++.++|++++|++|+++|+|++|++|||.+|+++|.+. ...|+ .++++++.+ +...+++|++++|| T Consensus 1 t~~~i~~~l~~~~i~~V~~~~~Dl~G~~r~k~~p~~~~~~~~~~~g~-------~f~~ssi~g---~~~~~~~D~~~~PD 70 (98) T 1f52_A 1 SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGK-------MFDGSSIGG---WKGINESDMVLMPD 70 (98) T ss_dssp CHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEEEGGGCCHHHHHHCE-------EEEGGGSTT---SCCSSCCEEEEEEC T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCC-------CCCCCCCCC---CCCCCCCCEEEEEC T ss_conf 98999999998898499999998999878999849997799985897-------114654356---77798788899975 Q ss_pred CCCCEECCCCCCCEEEEEEECCCCCCC Q ss_conf 012453878887709999740335752 Q gi|254780503|r 95 LSTLSIVPWEMDPTAQIVCDVVDYNGK 121 (461) Q Consensus 95 ~~Tl~~lPw~~~~~a~vl~~~~~~dG~ 121 (461) ++|++++||.++++|+|+|++++.||. T Consensus 71 ~~T~~~~Pw~~~~~a~V~~d~~~~dG~ 97 (98) T 1f52_A 71 ASTAVIDPFFADSTLIIRCDILEPGTL 97 (98) T ss_dssp GGGCEECSSCSSCEEEEEEEEECTTTC T ss_pred CCEEEECCCCCCCEEEEEEEEEECCCC T ss_conf 782289986889818999999868998 No 10 >>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:1-95) Probab=99.79 E-value=5.9e-19 Score=144.05 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=81.1 Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 98999999971798399999978898331267619887301-56773610000024277434665557788877899960 Q gi|254780503|r 16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISN-IPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPD 94 (461) Q Consensus 16 ~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD 94 (461) |+++++++|++++|++|++.|+|++|++|||.+|+++|.+. ...|. .++++++.+ +...+++|++++|| T Consensus 1 t~~~v~~~l~~~~i~~V~~~~~Di~G~~Rgk~i~~~~~~~~~~~~g~-------~~d~s~i~g---~~~~~~~D~~~~Pd 70 (95) T 2j9i_A 1 SAEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGY-------LEDGEVNAG---AAGAAASDIVLMPE 70 (95) T ss_dssp CHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCCTTHHHHCE-------EECGGGSTT---TCCTTCCCEEEEEC T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECHHHHHHHHHCCCE-------ECCCCCCCC---CCCCCCCCEEEEEC T ss_conf 98999999997899699999798999846899869999988746977-------036664367---67788888899987 Q ss_pred CCCCEECCCCCCCEEEEEEECCCC Q ss_conf 012453878887709999740335 Q gi|254780503|r 95 LSTLSIVPWEMDPTAQIVCDVVDY 118 (461) Q Consensus 95 ~~Tl~~lPw~~~~~a~vl~~~~~~ 118 (461) ++|++++||..+++|+|+|+++++ T Consensus 71 ~~T~~~~Pw~~~~~a~vl~d~~dp 94 (95) T 2j9i_A 71 LSTAAVAAAAAAATAAVICDGGAA 94 (95) T ss_dssp SSCCEECTTSSSSEEEEEEEEESS T ss_pred CCCCCCCCCCCCCCEEEEECCCCC T ss_conf 898743333344322689679997 No 11 >>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:359-421) Probab=99.18 E-value=1.5e-11 Score=95.41 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=53.0 Q ss_pred CCCHHCCCCCHHHHHHHHHCC-HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC Q ss_conf 003110478989999998659-89887355899999999999999998638997899876317 Q gi|254780503|r 399 NQEAINLPRGLLEAVTLLENT-SHFKDIFGSQFIDMYANLKRNEFETFMQVISPWEREFLLLN 460 (461) Q Consensus 399 ~~~~~~LP~sL~eAl~~l~~d-~~l~~~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~~ 460 (461) ..+.+.||.||.+||++|++| ++++++||++|++.|+++|++||++| |||||+++||.. T Consensus 2 ~~~i~~LP~sL~eAl~al~~d~e~l~~~lg~~~i~~y~~~K~~E~~~~---vt~wE~~~yl~~ 61 (63) T 2j9i_A 2 AAAPSEIPGKMEDALAALEQDAECLKAGLGEAFIRAAVAAAKYELENE---ETDAEGNKFLEY 61 (63) T ss_dssp CSSCCCCCSSHHHHHHHHTTCCSSSSCSCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHH T ss_conf 667000278999999999838499998669999999999999999986---484269999885 No 12 >>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} (A:) Probab=98.30 E-value=2.5e-06 Score=61.10 Aligned_cols=201 Identities=15% Similarity=0.127 Sum_probs=114.7 Q ss_pred CCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC Q ss_conf 76402322441799821678888777877888877667877776654428999998997678631102210101278642 Q gi|254780503|r 142 ELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQF 221 (461) Q Consensus 142 G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~ 221 (461) +=...+|+|.|+++++.+..... .....++..+.... .-..+..|.+..|. T Consensus 9 ~~~~~~GiE~E~~~Vd~~~~~~~------------------------~~~~~ll~~l~~~~-----~~~~i~~E~~~~~i 59 (372) T 1r8g_A 9 SEPFTLGIELEXQVVNPPGYDLS------------------------QDSSXLIDAVKNKI-----TAGEVKHDITESXL 59 (372) T ss_dssp CCTTCEEEEEEEEEEETTTTEEC------------------------SCCHHHHTTTSSSC-----SSSEEEECSSSSEE T ss_pred CCCCCEEEEEEEEEECCCCCCCC------------------------CCHHHHHHHHHCCC-----CCCCCCCCCCCCEE T ss_conf 99983488876632679987767------------------------75699999732324-----68861103777369 Q ss_pred CEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEE---ECCCCCC-----------------------CCCCHHHHHHH Q ss_conf 0111266-5211378999999999999863066033---1123211-----------------------35662689998 Q gi|254780503|r 222 EINIRHG-DPLKLADQVFLFKRTIREAAFKHDIYAT---FMAKPMQ-----------------------NYPGSAMHIHQ 274 (461) Q Consensus 222 Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~at---FmpKP~~-----------------------~~~GsG~H~h~ 274 (461) |++..+. ++-.+.+.+...+..+.+++.++|+... +.|+.-. ...-+|+|+|+ T Consensus 60 El~t~p~~~~~~~~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~rY~~~~~~~~~~~~~~~~~g~hvn~ 139 (372) T 1r8g_A 60 ELATDVCRDINQAAGQFSAXQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHV 139 (372) T ss_dssp EEECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEE T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCEEEC T ss_conf 97487879999999999999999999876516612435789789832134676078999998605288774001524755 Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---------HHHHHHHCCCC-----CCCCCCCCC- Q ss_conf 763136874233588655215666545777642232122207661---------01344204655-----754334243- Q gi|254780503|r 275 SVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYG---------NSYRRLVLDMG-----CPVNNAWGY- 339 (461) Q Consensus 275 SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Ptv---------NSYkRl~p~~~-----ap~~~~WG~- 339 (461) |+-|. +..-+-+-.+..++|.+.+|++.+. -|||-..=+.+ -+.+-+|.. T Consensus 140 ~~~~~---------------~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~S~R~~~~~~~~~~~~~~~~~~~~~~ 204 (372) T 1r8g_A 140 GCASG---------------DDAIYLLHGLSRFVPHFIALSAASPYXQGTDTRFASSRPNIFSAFPDNGPXPWVSNWQQF 204 (372) T ss_dssp ECSSH---------------HHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTSTTCSSCCCCSSHHHH T ss_pred CCCCH---------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHH T ss_conf 88999---------------999999999999989999986389000599885431057887218676887545663778 Q ss_pred ------CCCCEEEEEC-------CCCCCCCEEEEECCCCCCCH--HHHHHHHHHHHHHHHHH Q ss_conf ------3450036502-------23886520353035877998--99999999999998984 Q gi|254780503|r 340 ------DNRTTAFRIP-------FSDAKTKRIENRLPSSDTNP--YLVLAASLACGLLGILQ 386 (461) Q Consensus 340 ------~NR~~~iRip-------~~~~~~~riE~R~~d~~aNP--YL~laail~agl~Gi~~ 386 (461) --++..+... ...+...+||+|++|....+ +++.++.+.+-+..... T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~vr~~~~~~~iE~R~~D~~p~~~~~~~~~af~~~l~~~~~~ 266 (372) T 1r8g_A 205 EALFRCLSYTTXIDSIKDLHWDIRPSPHFGTVEVRVXDTPLTLSHAVNXAGLIQATAHWLLT 266 (372) T ss_dssp HHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999875246011355412205777666645334678999889999999999999999987 No 13 >>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422) Probab=98.30 E-value=5.4e-06 Score=58.83 Aligned_cols=156 Identities=17% Similarity=0.040 Sum_probs=90.1 Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-- Q ss_conf 777899999861027640232244179982167888877787788887766787777665442899999899767863-- Q gi|254780503|r 128 RNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQ-- 205 (461) Q Consensus 128 R~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~-- 205 (461) ...|.+.++.-...+-.+.+|+|+|+++++.+.... ........++..+....... T Consensus 18 ~~~l~~~~~~~~~~~~~~~~GiE~E~~~Vd~~~~~~----------------------~~~~~~~~~l~~L~~~~~~~~~ 75 (422) T 2gwd_A 18 REDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRP----------------------MKYDQIAELLNSIAERFEWEKV 75 (422) T ss_dssp HHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTCCB----------------------CCHHHHHHHHHHHHHHHTCEEE T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCC----------------------CCHHHHHHHHHHHHHHCCCCEE T ss_conf 999999998378884567589866614666798977----------------------9837799999999987398531 Q ss_pred -------HCCH-HHHHCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC-CCC----------- Q ss_conf -------1102-2101012786420111266-521137899999999999986306603311232-113----------- Q gi|254780503|r 206 -------GLEI-DTLIHEEGPAQFEINIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMAKP-MQN----------- 264 (461) Q Consensus 206 -------Gi~v-e~~~~E~gpGQ~Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP-~~~----------- 264 (461) .+.. -+.++|...+|.|++..+. +.-++++.+...+..+..++..+|....-+.-+ +.. T Consensus 76 ~~~~~~~~~~~~~~~~~e~~~~qiE~~t~p~~~~~~l~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~r 155 (422) T 2gwd_A 76 MEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGR 155 (422) T ss_dssp EETTEEEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCSCHH T ss_pred CCCCCEEEECCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCH T ss_conf 36885554337996451279966897156768899999999999999999998638101135534456744465556721 Q ss_pred ---------CCC--------HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf ---------566--------268999876313687423358865521566654577764223212220766 Q gi|254780503|r 265 ---------YPG--------SAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPY 318 (461) Q Consensus 265 ---------~~G--------sG~H~h~SL~d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt 318 (461) .-| +|+|+|+|+-+ . -.+.+..-+-.+..++|-+.++++.+ T Consensus 156 y~~l~~~~~~~~~~~~~~~~~~~~~qv~~~~----------~---~~~~~~~~~~~~~~~~p~l~aL~anS 213 (422) T 2gwd_A 156 YDIMRNYMPKVGSLGLDMMLRTCTVQVNLDF----------S---SEADMIRKFRAGLALQPIATALFANS 213 (422) T ss_dssp HHHHHHHGGGTCSSHHHHHHHBCEEEEEECC----------S---SHHHHHHHHHHHHHHHHHHHHHHCCB T ss_pred HHHHHHHHHHHCCCCCHHHHCCCCEEECCCC----------C---CHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 6789999985056440345300220542688----------8---67889999999999877999998558 No 14 >>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} (A:1-106) Probab=98.14 E-value=1.3e-05 Score=56.26 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=67.8 Q ss_pred HHHHHHHH--HCCCCEEEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 99999997--1798399999978898331267619887301567736100000242774346655577888778999600 Q gi|254780503|r 18 EQAAKWLK--DNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDL 95 (461) Q Consensus 18 ~~v~~~l~--~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~ 95 (461) +-+.+++. +.+--.+.++|+|=.|-+|+|.-..+...+ -+.-+-.|.|+|++-.-. ...++|++|+|.. T Consensus 10 ~~l~~y~~L~q~~kv~aeYIWIDGtg~lRsKtrtl~~~p~-----~~~dlP~WnfDGSST~QA----~G~nSd~~L~Pva 80 (106) T 3fky_A 10 QILQKYLELDQRGRIIAEYVWIDGTGNLRSKGRTLKKRIT-----SIDQLPEWNFDGSSTNQA----PGHDSDIYLKPVA 80 (106) T ss_dssp -----------CCCEEEEEEEECSSSCEEEEEEEESSCCC-----SGGGSCCEEECGGGTTSS----CCCC--EEEEEEE T ss_pred HHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEECCCCCC-----CHHHCCCCCCCCCCCCCC----CCCCCEEEEEECE T ss_conf 8999984767578079999997898887756466457889-----964598231578757874----0688508998271 Q ss_pred CCCEECCCCCCCEEEEEEECCCCCCCCC Q ss_conf 1245387888770999974033575212 Q gi|254780503|r 96 STLSIVPWEMDPTAQIVCDVVDYNGKEV 123 (461) Q Consensus 96 ~Tl~~lPw~~~~~a~vl~~~~~~dG~p~ 123 (461) ++..|+.....-.|+|++++.||+|. T Consensus 81 --i~~DPfr~g~n~LVlce~~~~dg~P~ 106 (106) T 3fky_A 81 --YYPDPFRRGDNIVVLAACYNNDGTPN 106 (106) T ss_dssp --EEECTTTCTTCEEEEEEEECTTSSBC T ss_pred --EECCCCCCCCCEEEEEEEECCCCCCC T ss_conf --86799989997489964202577531 No 15 >>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:1-104) Probab=97.91 E-value=5.1e-05 Score=52.43 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=64.7 Q ss_pred HCCCCEEEEEEECCCC-CEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCC Q ss_conf 1798399999978898-331267619887301567736100000242774346655577888778999600124538788 Q gi|254780503|r 26 DNRIEDVECITPDLAG-IPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLSIVPWE 104 (461) Q Consensus 26 ~~~I~~V~v~~~Dl~G-~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~~Tl~~lPw~ 104 (461) ..+.-.+.++|+|=.| .+|+|.-..+...+ -+..+-.|.|+|++-.-. ...++|++|+|. .++..|+. T Consensus 15 ~~~kv~aeYIWiDG~g~~lRsKtrtl~~~p~-----~~~dlP~WnfDGSST~QA----~G~~Sd~~L~Pv--a~~~DPfr 83 (104) T 2d3a_A 15 TTEKIIAEYIWIGGSGMDLRSKARTLPGPVT-----DPSKLPKWNYDGSSTGQA----PGEDSEVILYPQ--AIFKDPFR 83 (104) T ss_dssp TCSCEEEEEEEECTTSSCEEEEEEEESSCCC-----CGGGSCCEEEEGGGTTSS----CSSSCEEEEEEE--EEEECTTT T ss_pred CCCEEEEEEEEECCCCCCCCCEEEEECCCCC-----CHHHCCCCCCCCCCCCCC----CCCCCEEEEEEE--EEEECCCC T ss_conf 6777999999946899875542388156889-----975698734266411586----078777999830--98334456 Q ss_pred CCCEEEEEEECCCCCCCCCC Q ss_conf 87709999740335752123 Q gi|254780503|r 105 MDPTAQIVCDVVDYNGKEVT 124 (461) Q Consensus 105 ~~~~a~vl~~~~~~dG~p~~ 124 (461) ......|+|+++.+||+|.+ T Consensus 84 ~g~n~LVlce~~~~dg~P~~ 103 (104) T 2d3a_A 84 RGNNILVMCDCYTPAGEPIP 103 (104) T ss_dssp CTTCEEEEEEEECTTSCBCT T ss_pred CCCCEEEEEEEECCCCCCCC T ss_conf 79966999885237886224 No 16 >>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A (A:42-128) Probab=97.81 E-value=7.2e-05 Score=51.47 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=60.0 Q ss_pred EEEEEEECCCC-CEEEEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCEE Q ss_conf 99999978898-33126761988730156773610000024277434665557788877899960012453878887709 Q gi|254780503|r 31 DVECITPDLAG-IPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTA 109 (461) Q Consensus 31 ~V~v~~~Dl~G-~~RgK~vp~~~f~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD~~Tl~~lPw~~~~~a 109 (461) .+.++|+|=.| .+|+|.-..+...+ -+..+-.|.|+|++-.-. ...++|++|.|. .++..|+...... T Consensus 5 ~aeYIWiDG~g~~lRsKtrtl~~~p~-----~~~dlP~WnfDGSST~QA----~G~~Sd~~L~Pv--ai~~DPfR~g~ni 73 (87) T 2ojw_A 5 QAMYIWIDGTGEGLRCKTRTLDSEPK-----CVEELPEWNFDGSSTLQS----EGSNSDMYLVPA--AMFRDPFRKDPNK 73 (87) T ss_dssp EEEEEEECTTSSCEEEEEEEESSCCS-----SGGGSCCEEEEGGGTTSS----BTTBCEEEEEEE--EEEECTTTCTTCE T ss_pred EEEEEEECCCCCCCCCCCEEECCCCC-----CHHHCCCCCCCCCCCCCC----CCCCCEEEEECC--EECCCCCCCCCCE T ss_conf 99999855899886666246147888-----876797715666645787----678825999678--0214899999978 Q ss_pred EEEEECCCCCCCC Q ss_conf 9997403357521 Q gi|254780503|r 110 QIVCDVVDYNGKE 122 (461) Q Consensus 110 ~vl~~~~~~dG~p 122 (461) .|||+++.+||+| T Consensus 74 LVlCe~~~~dg~P 86 (87) T 2ojw_A 74 LVLCEVFKYNRRP 86 (87) T ss_dssp EEEEEEECTTSCB T ss_pred EEEEEEECCCCCC T ss_conf 9999500168862 No 17 >>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} (A:19-156,A:243-337,A:461-481) Probab=95.86 E-value=0.0015 Score=42.87 Aligned_cols=182 Identities=16% Similarity=0.103 Sum_probs=99.4 Q ss_pred CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCE Q ss_conf 40232244179982167888877787788887766787777665442899999899767863110221010127864201 Q gi|254780503|r 144 KPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEI 223 (461) Q Consensus 144 ~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei 223 (461) ...+|+|.||++++.+.....+..+. .+ . .-..-..+.+|..-.|.|+ T Consensus 3 ~~t~GIE~E~llVD~~g~~a~~~hp~------------------------~L-------g-sal~~p~IttElses~LEi 50 (254) T 1va6_A 3 GIQRGLERETLRVNADGTLATTGHPE------------------------AL-------G-SALTHKWITTDFAEALLEF 50 (254) T ss_dssp TCEEEEEEEEEEECTTSCBCCSCSCG------------------------GG-------C-CTTTCSSEEECSBTTEEEE T ss_pred CCCCCEEEEHHEECCCCCCCCCCCCH------------------------HH-------C-CCCCCCCCCCCCCHHHHHH T ss_conf 58746441010268897846999974------------------------33-------8-7531779887557887773 Q ss_pred EECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC--------CCCCC---------------CC----------HH Q ss_conf 11266-52113789999999999998630660331123--------21135---------------66----------26 Q gi|254780503|r 224 NIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMAK--------PMQNY---------------PG----------SA 269 (461) Q Consensus 224 ~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK--------P~~~~---------------~G----------sG 269 (461) +..+. ++-.+.+.+.-.+..+.+.|..+|+...=||- |+... .+ +| T Consensus 51 ~Tpp~~~~~e~l~~L~~l~~~v~~~a~~e~lw~~Smg~~l~~~~~iP~A~~g~sn~~~~k~rYR~~l~~ryg~~~q~I~G 130 (254) T 1va6_A 51 ITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISG 130 (254) T ss_dssp ECCCBSCHHHHHHHHHHHHHHHHTSSTTCEECCSSSCSSCCTTCCCCBCCCCSSHHHHHHHHHHHHHHHHHCHHHHTCCE T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCC T ss_conf 78999999999999999999999608875326778898888736666201687543158999999999971504421011 Q ss_pred HHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH---CCCCC-CCCCCCCCCC-CC Q ss_conf 89998763-1368742335886552156665457776422321222076610134420---46557-5433424334-50 Q gi|254780503|r 270 MHIHQSVL-DIKSNQNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLV---LDMGC-PVNNAWGYDN-RT 343 (461) Q Consensus 270 ~H~h~SL~-d~~~g~n~f~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~---p~~~a-p~~~~WG~~N-R~ 343 (461) +|+|+|+= +.+.+-++-++. ...++.+|-+.+ .-.-..|.++. .|.|- =+..---.+| -- T Consensus 131 vHvhvsvp~~~q~~~~~~~n~-------l~~y~~~l~~a~-------~~~~~~y~~~g~~~~g~~~qln~~~lq~ene~y 196 (254) T 1va6_A 131 VHYNFSLPNKSQSNLGITFND-------LYEYVAGLKQAI-------KTPSEEYAKIGIEKDGKRLQINSNVLQIENELY 196 (254) T ss_dssp EEEEEECCCGGGTTSCCCSSC-------HHHHHHHHHHHH-------TCBCHHHHTTCSEETTEECCSCSBSCSSGGGCC T ss_pred EEECCCCCCCCCCCCCCCCCC-------CHHHHHHHHHHH-------CCCCHHHHHHCCCCCCHHHHHHCCCCCCHHHHC T ss_conf 233245776643334442222-------188899999997-------598426888575788667664216222324422 Q ss_pred EEEEECC---CCC---------CCCEEEEECCCCCCCHHHHH Q ss_conf 0365022---388---------65203530358779989999 Q gi|254780503|r 344 TAFRIPF---SDA---------KTKRIENRLPSSDTNPYLVL 373 (461) Q Consensus 344 ~~iRip~---~~~---------~~~riE~R~~d~~aNPYL~l 373 (461) ..||-+. .+. .-..||+|+.| .||+.-+ T Consensus 197 ~~irpk~~~~~~e~~~~al~~~gv~yie~r~ld--~np~~~~ 236 (254) T 1va6_A 197 APIRPKRVTRSGESPSDALLRGGIEYIEVRSLD--INPFGGT 236 (254) T ss_dssp CSEEEECCCCTTCCHHHHHHHHCCCEEEEEEEE--CCTT--C T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEC--CCCCHHH T ss_conf 542556678888668999985587579876303--7740999 No 18 >>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* (A:105-356) Probab=94.96 E-value=0.012 Score=36.81 Aligned_cols=58 Identities=9% Similarity=-0.145 Sum_probs=44.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH----HC--------CCCCCCCCCCCCC---CCCEEEEECCCC Q ss_conf 5666545777642232122207661013442----04--------6557543342433---450036502238 Q gi|254780503|r 295 DNFRYFIGGLQKYIPNALVMLAPYGNSYRRL----VL--------DMGCPVNNAWGYD---NRTTAFRIPFSD 352 (461) Q Consensus 295 ~~~~~fiaGil~h~~al~a~~~PtvNSYkRl----~p--------~~~ap~~~~WG~~---NR~~~iRip~~~ 352 (461) ..++++|+|++.|+.++++++++++|+|+|. .| +..+++.++.+.. ++-.=+|+|.+. T Consensus 161 ~~~~~~i~~~~~~~~a~~a~~~~sy~r~~~~~~~~ap~~~~WG~~NR~~~vRv~~~~~~~~~~r~E~R~~d~~ 233 (252) T 2d3a_A 161 VIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASN 233 (252) T ss_dssp HHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHHHHHTTCCCEEECCCBTT T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEECCCCCC T ss_conf 5899999988867888722578606654698657887732772467877798577778787628997987787 No 19 >>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} (A:) Probab=43.87 E-value=20 Score=15.66 Aligned_cols=107 Identities=17% Similarity=0.039 Sum_probs=66.8 Q ss_pred CHHHHHHHHHHHHHCCCCC-EEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 2577789999986102764-023224417998216788887778778888776678777766544289999989976786 Q gi|254780503|r 126 TPRNVLKRVLNFYAQNELK-PIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEK 204 (461) Q Consensus 126 ~PR~iLkr~i~~l~~~G~~-~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~ 204 (461) .-...-++.++.+++.|+. +++.+...-..-... . +. .-...-..++++++.+.+ T Consensus 33 ~~~~~~~~di~~~k~~G~n~vR~~i~w~~~~~~~~-------------~-------~~----~~~~~~~~~d~~v~~~~~ 88 (341) T 1vjz_A 33 STGNFKEEDFLWXAQWDFNFVRIPXCHLLWSDRGN-------------P-------FI----IREDFFEKIDRVIFWGEK 88 (341) T ss_dssp CCCCCCHHHHHHHHHTTCCEEEEEEEGGGTSCSSC-------------T-------TC----CCGGGHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHCCCCEEEECCCHHHHCCCCC-------------C-------CC----CCHHHHHHHHHHHHHHHH T ss_conf 46677599999999859988991166999057888-------------7-------66----598999999999999997 Q ss_pred HHCCH-HHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 31102-21010127864201112665211378999999999999863066033 Q gi|254780503|r 205 QGLEI-DTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYAT 256 (461) Q Consensus 205 ~Gi~v-e~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~at 256 (461) .||.+ -..||..++-+.-........-...+..-.++..++.+|++++=..+ T Consensus 89 ~Gi~vii~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ry~~~~~ 141 (341) T 1vjz_A 89 YGIHICISLHRAPGYSVNKEVEEKTNLWKDETAQEAFIHHWSFIARRYKGISS 141 (341) T ss_dssp HTCEEEEEEEEETTEESCTTSCCSSCTTTCHHHHHHHHHHHHHHHHHHTTSCT T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 59947997236887666777655542346524577799999999998721587 No 20 >>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} (A:) Probab=41.27 E-value=22 Score=15.41 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 57778999998610276402322441799821678888777877888877667877776654428999998997678631 Q gi|254780503|r 127 PRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQG 206 (461) Q Consensus 127 PR~iLkr~i~~l~~~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~G 206 (461) |+..-+++++.+++.|..+-.-.++||++.=.+ ++-++.+...+.+.| T Consensus 17 ~~~~n~~Vl~~L~e~G~dl~~~~~Ieh~~~F~~--------------------------------~~~~e~~a~~~~~~g 64 (132) T 1nxi_A 17 QKEETRDIIQALLEDGSDPDALYEIEHHLFAED--------------------------------FDKLEKAAVEAFKMG 64 (132) T ss_dssp HHHHHHHHHHHHHHHTCCTTSCEEEEEEEEESC--------------------------------HHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECC--------------------------------HHHHHHHHHHHHHCC T ss_conf 798899999999966998576736669999699--------------------------------899999999999879 Q ss_pred CCHHHH---HCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 102210---1012786420111266521137899999999999986306 Q gi|254780503|r 207 LEIDTL---IHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHD 252 (461) Q Consensus 207 i~ve~~---~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G 252 (461) ..|+.. ..|.|.+-|.+.+.....+...+=.-... -+-.+|.++| T Consensus 65 ~~v~~~~e~e~edg~~~~~~~~~~~~~l~~~~I~~~~~-~L~~lA~~~~ 112 (132) T 1nxi_A 65 FEVLEAEETEDEDGNKLLCFDATMQSALDAKLIDEQVE-KLVNLAEKFD 112 (132) T ss_dssp CCCBCCCCBCCSSCSSBEEEEEEEEECSCHHHHHHHHH-HHHHHHHHHT T ss_pred CEEECCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHH-HHHHHHHHHC T ss_conf 87733543455789858999999964699899999999-9999999959 No 21 >>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:1-22,A:267-440) Probab=40.82 E-value=11 Score=17.34 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=29.2 Q ss_pred CEEECC-CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC Q ss_conf 011126-6521137899999999999986306603311232113566 Q gi|254780503|r 222 EINIRH-GDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPG 267 (461) Q Consensus 222 Ei~~~~-~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~G 267 (461) ||.++. .+++++||....+....++.|++.||.+.-.+-.+.+..- T Consensus 8 ~~~~~~~~~~~~~~~sN~~al~AA~~~A~~~Gy~~~ils~~l~GeAr 54 (196) T 1x3l_A 8 EIGLRLVGEAIKAADSNSISCEAIAREAQRLGFKAYIMTTTLEGEAK 54 (196) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCEEEEEEEEECSBHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHH T ss_conf 99999999999852971899999999999869957603788888589 No 22 >>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} (A:51-98,A:292-392) Probab=32.70 E-value=23 Score=15.25 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.7 Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEE Q ss_conf 899999997179839999997889833126761 Q gi|254780503|r 17 WEQAAKWLKDNRIEDVECITPDLAGIPRGKMMP 49 (461) Q Consensus 17 ~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp 49 (461) ++.+.++.+.+.+-.-.+.|+|+.|..||..+. T Consensus 20 l~~l~~~~~~~k~v~~~~~~~DiaGlv~g~~l~ 52 (149) T 1ni3_A 20 FDWLCEAYKPKSRVPAFLTVFDIAGLTKGSXLP 52 (149) T ss_dssp HHHHHHHHCCSEEECEEEEEECTGGGCCCCSHH T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHH T ss_conf 244544137776321589999668866762256 No 23 >>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=32.36 E-value=30 Score=14.50 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=52.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHC-----------CCCCCCCCEEECCCCCH--------HHHHHHHHHHHHH Q ss_conf 7665442899999899767863110221010-----------12786420111266521--------1378999999999 Q gi|254780503|r 184 SIMGINEFDEIIDDIWKFSEKQGLEIDTLIH-----------EEGPAQFEINIRHGDPL--------KLADQVFLFKRTI 244 (461) Q Consensus 184 ~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~-----------E~gpGQ~Ei~~~~~~~l--------~aaD~~~~~k~~i 244 (461) +........+++.+|.+.|...+|..++-.. +..+=||||.+--.+.+ +..-+.+.||.++ T Consensus 32 ~~tSs~~p~ei~~ei~~vl~~~~i~~~~~~~~~l~c~~~~~~~~~~v~FEieVckvp~~~L~GIrfKRisGdtw~YK~ia 111 (126) T 1v5s_A 32 FQGSSGSSGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIA 111 (126) T ss_dssp CCCCCSSHHHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHH T ss_conf 33355999999999999876039860417865899871388888537999999972788641388886048837899999 Q ss_pred HHHHHHHCCCE Q ss_conf 99986306603 Q gi|254780503|r 245 REAAFKHDIYA 255 (461) Q Consensus 245 k~vA~~~G~~a 255 (461) .+|.....+.- T Consensus 112 ~~Il~~l~L~~ 122 (126) T 1v5s_A 112 SKIANELKLSG 122 (126) T ss_dssp HHHHHHTTCCC T ss_pred HHHHHHCCCCC T ss_conf 99998724779 No 24 >>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} (A:1-49) Probab=30.69 E-value=27 Score=14.81 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCCCEEEC Q ss_conf 9899767863110221010127864201112 Q gi|254780503|r 196 DDIWKFSEKQGLEIDTLIHEEGPAQFEINIR 226 (461) Q Consensus 196 ~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~ 226 (461) ..|...|++.|++++++..---||-||+.+. T Consensus 3 a~i~~~L~~~~~~v~~I~~spi~GlyeV~~~ 33 (49) T 1eej_A 3 AAIQQTLAKMGIKSSDIQPAPVAGMKTVLTN 33 (49) T ss_dssp HHHHHHHHHTTCCEEEEEECSSTTEEEEEET T ss_pred HHHHHHHHHCCCCEEEECCCCCCCEEEEEEC T ss_conf 8999987863994324613888862899989 No 25 >>1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} (A:) Probab=30.66 E-value=32 Score=14.31 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=53.7 Q ss_pred HHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC Q ss_conf 999989976786311022101012786420111266521137899999999999986306603311232113 Q gi|254780503|r 193 EIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQN 264 (461) Q Consensus 193 ~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~~ 264 (461) .++.++...|...|++|+........|.+.+.+.-.-+... ..-.++.-...+|.++|+..++.+..... T Consensus 17 Giva~vt~~la~~g~NI~~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~~L~~~~~~~~~~i~i~~~~~~~ 86 (91) T 1zpv_A 17 GIVAGVSGKIAELGLNIDDISQTVLDEYFTXXAVVSSDEKQ--DFTYLRNEFEAFGQTLNVKINIQSAAIFE 86 (91) T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC--CHHHHHHHHHHHHHHHTEEEEEEEGGGTC T ss_pred CHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEECCCCC--CHHHHHHHHHHHHHHCCCEEEEEEHHHHH T ss_conf 79999999999879939980518937951899999669999--99999999999999829789998089898 No 26 >>3cny_A Inositol catabolism protein IOLE; NP_786806.1, xylose isomerase-like TIM barrel, structural genomics; 1.85A {Lactobacillus plantarum WCFS1} (A:) Probab=28.76 E-value=23 Score=15.28 Aligned_cols=77 Identities=10% Similarity=-0.036 Sum_probs=50.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEE-----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC Q ss_conf 4289999989976786311022101012786420111-----26652113789999999999998630660331123211 Q gi|254780503|r 189 NEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINI-----RHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQ 263 (461) Q Consensus 189 ~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~-----~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~~ 263 (461) ....+.+.+.++.+..+|...-..+.-..++.....- ...+--.+-|+++-.=.-+-+.|.++|....+.+-+.. T Consensus 86 ~~~~~~~~~~i~~a~~lg~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~l~~E~~~~~ 165 (301) T 3cny_A 86 EKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAYHHHXGT 165 (301) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTS T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCE T ss_conf 45778888899999984036355540244420255677667788888999999999999999999865971588525550 Q ss_pred CC Q ss_conf 35 Q gi|254780503|r 264 NY 265 (461) Q Consensus 264 ~~ 265 (461) .. T Consensus 166 ~~ 167 (301) T 3cny_A 166 GI 167 (301) T ss_dssp SS T ss_pred EC T ss_conf 00 No 27 >>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A (A:) Probab=26.48 E-value=38 Score=13.84 Aligned_cols=23 Identities=9% Similarity=-0.103 Sum_probs=12.9 Q ss_pred HHHHHHHHCCCEEECCCCCCCCC Q ss_conf 99998630660331123211356 Q gi|254780503|r 244 IREAAFKHDIYATFMAKPMQNYP 266 (461) Q Consensus 244 ik~vA~~~G~~atFmpKP~~~~~ 266 (461) +.+.|+++|.+.||.|-+|...+ T Consensus 108 iG~~Ak~~~iRLS~HP~qf~vL~ 130 (301) T 2j6v_A 108 LGALARAFGQRLSMHPGQYVNPG 130 (301) T ss_dssp HHHHHHHTTCEEEECCCTTCCTT T ss_pred HHHHHHHHCCEEEECCCCCCCCC T ss_conf 99999982963886698550268 No 28 >>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} (A:1-101,A:193-412) Probab=24.70 E-value=41 Score=13.63 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=52.4 Q ss_pred CCCCCEEEEECCCCCC--CCCCC----CCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHC------CHH Q ss_conf 2244179982167888--87778----778888776678777766544-----289999989976786311------022 Q gi|254780503|r 148 APEIEFYLIAKNEDPD--YPLQP----PKGRSGRSILGGQSYSIMGIN-----EFDEIIDDIWKFSEKQGL------EID 210 (461) Q Consensus 148 g~E~EF~L~~~~~~~~--~~~~~----~~~~~~~~~~~~~~y~~~~~~-----~~~~~l~~i~~~l~~~Gi------~ve 210 (461) |.|++++.|..+.+-. ...+. ..+..+..+.+...|+=.++. ..+.+++.+.+.|.+.|+ .++ T Consensus 103 G~E~Sv~a~~dG~~~~~l~~~qdhKr~~dgD~GPnTGgmGa~~P~p~~~~~~~~~~~Ii~~t~~al~~eG~~y~Gvl~~~ 182 (321) T 1vkz_A 103 GNELSAXAVVNGRNFVILPFVRDYKRLXDGDRGPNTGGXGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLG 182 (321) T ss_dssp SEEEEEEEEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEE T ss_pred CCCCEEEEEECCCEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHHHHHHHHHCCCEEEEEEEEE T ss_conf 65210599962998998965345412205887654344454445786520000001033686667774396079874027 Q ss_pred HHHCCCCCCCCCEEECCCCCHHHH Q ss_conf 101012786420111266521137 Q gi|254780503|r 211 TLIHEEGPAQFEINIRHGDPLKLA 234 (461) Q Consensus 211 ~~~~E~gpGQ~Ei~~~~~~~l~aa 234 (461) -+.++.||=-.|+|.++.|+.... T Consensus 183 lmlt~~GpkVIE~N~R~Gdpe~q~ 206 (321) T 1vkz_A 183 LXLHDGDPYILEYNVRLGDPETEV 206 (321) T ss_dssp EEEETTEEEEEEEESSCCTTHHHH T ss_pred EEEECCCEEEEEEEECCCCCCCCC T ss_conf 797189706998640125784400 No 29 >>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:156-192,A:287-329) Probab=22.93 E-value=44 Score=13.41 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=38.2 Q ss_pred HHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 9998659898873558999999999999999986389978998763179 Q gi|254780503|r 413 VTLLENTSHFKDIFGSQFIDMYANLKRNEFETFMQVISPWEREFLLLNV 461 (461) Q Consensus 413 l~~l~~d~~l~~~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~~~ 461 (461) ..+-++|+.+++.|..-++...+..-...++.... +|.+.+||+.-| T Consensus 32 ~~~~~~s~evR~yfsPlVm~aVl~Rya~hLe~~R~--HPLdiRRYyrKv 78 (80) T 3eua_A 32 AKAHEKDDSVKGYLAPLVLNRVLRSYADELAEERN--HPLSHRRYXWKV 78 (80) T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCTTCCSSTTTS T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCC T ss_conf 99765499951558899999999999999999968--499989997631 No 30 >>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P (A:288-339,A:498-529) Probab=22.74 E-value=44 Score=13.39 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=22.5 Q ss_pred CCHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHHH Q ss_conf 5589999999999999999----863899789987631 Q gi|254780503|r 426 FGSQFIDMYANLKRNEFET----FMQVISPWEREFLLL 459 (461) Q Consensus 426 lg~~~v~~~~~~k~~E~~~----~~~~vt~wE~~~yl~ 459 (461) +|+.=++...++|+.|++. |...+.-|..++|.. T Consensus 3 lG~kE~~~Ll~lKk~e~e~rg~~fDg~~y~WD~ryY~~ 40 (84) T 2o36_A 3 LGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMN 40 (84) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCSSCCTTTHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH T ss_conf 99999999999999887522798767767122889986 No 31 >>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P (A:304-356,A:513-545) Probab=22.07 E-value=46 Score=13.30 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=24.7 Q ss_pred CCHHHHHHHHHHHHHHHH----HHHCCCCHHHHHHHHH Q ss_conf 558999999999999999----9863899789987631 Q gi|254780503|r 426 FGSQFIDMYANLKRNEFE----TFMQVISPWEREFLLL 459 (461) Q Consensus 426 lg~~~v~~~~~~k~~E~~----~~~~~vt~wE~~~yl~ 459 (461) +|+.=++...++|+.|.+ .|......|..++|.. T Consensus 3 lg~kE~~~Ll~lKk~d~e~rg~~~Dg~~y~WD~rYY~~ 40 (86) T 2o3e_A 3 LGEAEREFILSLKKKECEERGFEYDGKINAWDLHYYMT 40 (86) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH T ss_conf 36999999999987766522777656667222888887 No 32 >>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} (A:1-172,A:268-292) Probab=21.03 E-value=48 Score=13.16 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHHHHCC-CEEE-CCCCCCCCCCHHHHH Q ss_conf 999999999999863066-0331-123211356626899 Q gi|254780503|r 236 QVFLFKRTIREAAFKHDI-YATF-MAKPMQNYPGSAMHI 272 (461) Q Consensus 236 ~~~~~k~~ik~vA~~~G~-~atF-mpKP~~~~~GsG~H~ 272 (461) .-..++.+++|++.-.|+ .+.| |++|+.=..++||.+ T Consensus 156 ~~~~~~~~~HEi~HaLG~~~~~~~~~~~~~~~~~~~~~~ 194 (197) T 1lml_A 156 DQLVTRVVTHEMAHALGFYQADFSKAEVMPWGQNAGCAF 194 (197) T ss_dssp CHHHHHHHHHHHHHHTTSCEECGGGCCCCCTTTTCCHHH T ss_pred CHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC T ss_conf 068999999999876418075254345660204578762 No 33 >>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} (A:1-49) Probab=20.54 E-value=32 Score=14.29 Aligned_cols=30 Identities=3% Similarity=-0.209 Sum_probs=23.9 Q ss_pred HHHHHHHHHHCCHHHHHCCCCCCCCCEEEC Q ss_conf 899767863110221010127864201112 Q gi|254780503|r 197 DIWKFSEKQGLEIDTLIHEEGPAQFEINIR 226 (461) Q Consensus 197 ~i~~~l~~~Gi~ve~~~~E~gpGQ~Ei~~~ 226 (461) .|...|+..|++++++..---||-||+.+. T Consensus 4 ~i~~~L~~~~~~v~~I~~spi~GlyeV~~~ 33 (49) T 1t3b_A 4 AIKRKLQSFNISNIVIKSSPISGIKTAVTD 33 (49) T ss_dssp TTHHHHHTTTCCSCCCCBCSSTTEECCEET T ss_pred HHHHHHHHCCCCEEEEECCCCCCEEEEEEC T ss_conf 999999865997036705898983999989 No 34 >>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structure initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP} (A:) Probab=20.39 E-value=49 Score=13.08 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=43.1 Q ss_pred HHHHHHHHHC-CCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 8999998610-276402322441799821678888777877888877--6678777766544289999989976786311 Q gi|254780503|r 131 LKRVLNFYAQ-NELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRS--ILGGQSYSIMGINEFDEIIDDIWKFSEKQGL 207 (461) Q Consensus 131 Lkr~i~~l~~-~G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi 207 (461) +.+.++-+.+ .|+++....+-+..+..................... ......+..... ..+=++++++.|.+.|+ T Consensus 36 ~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~di~~~~~~l~~~G~ 113 (148) T 2r6u_A 36 GDRARAFYRDAFGWAIAEIPDMDYSMVTTGPVGESGMPDEPGYINGGMMQRGEVTTPVVTV--DVESIESALERIESLGG 113 (148) T ss_dssp HHHHHHHHHHHHCCEEEEETTTTEEEEECSCBCTTSSBCSSSCBCEEEEESSSSCSCEEEE--ECSCHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEE--ECCCCHHEEEECCCCCC T ss_conf 9999999998529788885589859999768772445520243322456678605889986--20421010000112550 Q ss_pred CHHHHHCCCCCCCCCEEECC Q ss_conf 02210101278642011126 Q gi|254780503|r 208 EIDTLIHEEGPAQFEINIRH 227 (461) Q Consensus 208 ~ve~~~~E~gpGQ~Ei~~~~ 227 (461) .+..--.+...|+..+.+.= T Consensus 114 ~~~~~~~~~~~g~~~~~~~D 133 (148) T 2r6u_A 114 KTVTGRTPVGNMGFAAYFTD 133 (148) T ss_dssp EEEEEEEEETTTEEEEEEEC T ss_pred EEEECCEECCCCEEEEEEEC T ss_conf 78666325599879999999 Done!