HHSEARCH alignment of GI: 254780503 and SCOP domain: d1f52a2

Alignment
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=100.00  E-value=0  Score=733.82  Aligned_cols=334  Identities=30%  Similarity=0.455  Sum_probs=299.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCE--EECCCCCEEEEECCCCC-------------CCCC----CCCCC-CCCCCCCCCCCC
Q ss_conf             3425777899999861027640--23224417998216788-------------8877----78778-888776678777
Q gi|254780503|r  124 TYTPRNVLKRVLNFYAQNELKP--IIAPEIEFYLIAKNEDP-------------DYPL----QPPKG-RSGRSILGGQSY  183 (461)
Q Consensus       124 ~~~PR~iLkr~i~~l~~~G~~~--~~g~E~EF~L~~~~~~~-------------~~~~----~~~~~-~~~~~~~~~~~y  183 (461)
                      ..|||++|||++++++++|+++  .+|+|+|||||++....             ....    ....+ ........+.+|
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             98879999999999997699870378854288999421035576777565577322456887666887787655577615


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf             7665442899999899767863110221010127-864201112665211378999999999999863066033112321
Q gi|254780503|r  184 SIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEG-PAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPM  262 (461)
Q Consensus       184 ~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~  262 (461)
                      ++...+..++|+++|++.|+.+||+||++|+|+| ||||||++.|+++|+|||+++++|++||+||++||++|||||||+
T Consensus        81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~  160 (368)
T d1f52a2          81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM  160 (368)
T ss_dssp             BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred             EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             53001107889999999888622570564223456784322078786577889999999999999997436334741568


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             135662689998763136874233588-6552156665457776422321222076610134420465575433424334
Q gi|254780503|r  263 QNYPGSAMHIHQSVLDIKSNQNIFSNP-DGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDN  341 (461)
Q Consensus       263 ~~~~GsG~H~h~SL~d~~~g~n~f~~~-~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~N  341 (461)
                      .+.+|||||+|+|||+  +|+|+|+++ .+++|+++++||||||+|++++++|+|||+||||||+|++|||++++||.+|
T Consensus       161 ~~~~GsG~HiH~Sl~~--~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~N  238 (368)
T d1f52a2         161 FGDNGSGMHCHMSLAK--NGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARN  238 (368)
T ss_dssp             TTSCCCCEEEEEEEEE--TTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSC
T ss_pred             CCCCCCCEEEEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCC
T ss_conf             8987753258987415--99856565555564899999999999866998999779960776524777687434523676


Q ss_pred             CCEEEEECC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CHHCCCCCHHHHH
Q ss_conf             500365022-38865203530358779989999999999999898468887433453000-------3110478989999
Q gi|254780503|r  342 RTTAFRIPF-SDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ-------EAINLPRGLLEAV  413 (461)
Q Consensus       342 R~~~iRip~-~~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~-------~~~~LP~sL~eAl  413 (461)
                      |+++||||. ++++++|||+|++|++|||||++||+|+|||+||+++++|++|+.+|+++       +.++||.||.|||
T Consensus       239 R~a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl  318 (368)
T d1f52a2         239 RSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEAL  318 (368)
T ss_dssp             TTEEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHH
T ss_pred             CCCCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHH
T ss_conf             55314640257886624784478801777899999999765424215899997778724489767623201513799999


Q ss_pred             HHHHCCHHHHH---HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99865989887---35589999999999999999863899789987631
Q gi|254780503|r  414 TLLENTSHFKD---IFGSQFIDMYANLKRNEFETFMQVISPWEREFLLL  459 (461)
Q Consensus       414 ~~l~~d~~l~~---~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~  459 (461)
                      ++|++|+.+++   +||++||+.|+++||+||++|+++||+||+++||.
T Consensus       319 ~al~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~  367 (368)
T d1f52a2         319 NALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYS  367 (368)
T ss_dssp             HHHHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTT
T ss_pred             HHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             9996497878876515699999999999999999967999999974168


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]