Query gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs 147 out of 2566
Neff 7.4
Searched_HMMs 13730
Date Wed Jun 1 10:15:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780503.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f52a2 d.128.1.1 (A:101-468) 100.0 0 0 733.8 25.0 334 124-459 1-367 (368)
2 d2bvca2 d.128.1.1 (A:105-478) 100.0 0 0 712.2 26.0 333 125-459 2-373 (374)
3 d1f52a1 d.15.9.1 (A:1-100) Glu 99.8 1.6E-20 1.2E-24 151.8 9.4 98 16-123 1-100 (100)
4 d2bvca1 d.15.9.1 (A:5-104) Glu 99.8 2.2E-20 1.6E-24 150.9 9.9 98 16-123 1-100 (100)
5 d1r8ga_ d.128.1.3 (A:) Carboxy 98.2 3E-06 2.2E-10 57.9 7.3 89 142-259 7-96 (368)
6 d1gvha3 c.25.1.5 (A:254-396) F 43.7 8.2 0.0006 15.6 2.9 30 191-220 111-141 (143)
7 d1cqxa3 c.25.1.5 (A:262-403) F 42.7 8.5 0.00062 15.5 3.0 30 192-221 110-140 (142)
8 d1tvca2 c.25.1.2 (A:111-251) M 23.4 18 0.0013 13.5 2.2 29 192-220 110-139 (141)
9 d2b0ja1 a.100.1.11 (A:243-344) 22.4 18 0.0013 13.3 2.5 46 375-420 54-99 (102)
10 d1ul7a_ d.129.6.1 (A:) Map/mic 22.0 19 0.0014 13.3 3.9 70 182-251 12-100 (102)
11 d1z2la2 d.58.19.1 (A:213-329) 21.9 19 0.0014 13.3 4.8 38 220-257 72-109 (117)
12 d1tg7a5 c.1.8.14 (A:41-394) Be 21.7 16 0.0012 13.7 1.3 24 124-147 70-93 (354)
13 d1tpna_ g.27.1.1 (A:) Tissue-t 20.4 16 0.0012 13.8 1.0 19 32-51 31-49 (50)
No 1
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=100.00 E-value=0 Score=733.82 Aligned_cols=334 Identities=30% Similarity=0.455 Sum_probs=299.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCE--EECCCCCEEEEECCCCC-------------CCCC----CCCCC-CCCCCCCCCCCC
Q ss_conf 3425777899999861027640--23224417998216788-------------8877----78778-888776678777
Q gi|254780503|r 124 TYTPRNVLKRVLNFYAQNELKP--IIAPEIEFYLIAKNEDP-------------DYPL----QPPKG-RSGRSILGGQSY 183 (461)
Q Consensus 124 ~~~PR~iLkr~i~~l~~~G~~~--~~g~E~EF~L~~~~~~~-------------~~~~----~~~~~-~~~~~~~~~~~y 183 (461)
..|||++|||++++++++|+++ .+|+|+|||||++.... .... ....+ ........+.+|
T Consensus 1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T d1f52a2 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80 (368)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 98879999999999997699870378854288999421035576777565577322456887666887787655577615
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 7665442899999899767863110221010127-864201112665211378999999999999863066033112321
Q gi|254780503|r 184 SIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEG-PAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPM 262 (461)
Q Consensus 184 ~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpKP~ 262 (461)
++...+..++|+++|++.|+.+||+||++|+|+| ||||||++.|+++|+|||+++++|++||+||++||++|||||||+
T Consensus 81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~ 160 (368)
T d1f52a2 81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM 160 (368)
T ss_dssp BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 53001107889999999888622570564223456784322078786577889999999999999997436334741568
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 135662689998763136874233588-6552156665457776422321222076610134420465575433424334
Q gi|254780503|r 263 QNYPGSAMHIHQSVLDIKSNQNIFSNP-DGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDN 341 (461)
Q Consensus 263 ~~~~GsG~H~h~SL~d~~~g~n~f~~~-~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~N 341 (461)
.+.+|||||+|+|||+ +|+|+|+++ .+++|+++++||||||+|++++++|+|||+||||||+|++|||++++||.+|
T Consensus 161 ~~~~GsG~HiH~Sl~~--~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~N 238 (368)
T d1f52a2 161 FGDNGSGMHCHMSLAK--NGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARN 238 (368)
T ss_dssp TTSCCCCEEEEEEEEE--TTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSC
T ss_pred CCCCCCCEEEEEEECC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCC
T ss_conf 8987753258987415--99856565555564899999999999866998999779960776524777687434523676
Q ss_pred CCEEEEECC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CHHCCCCCHHHHH
Q ss_conf 500365022-38865203530358779989999999999999898468887433453000-------3110478989999
Q gi|254780503|r 342 RTTAFRIPF-SDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ-------EAINLPRGLLEAV 413 (461)
Q Consensus 342 R~~~iRip~-~~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~-------~~~~LP~sL~eAl 413 (461)
|+++||||. ++++++|||+|++|++|||||++||+|+|||+||+++++|++|+.+|+++ +.++||.||.|||
T Consensus 239 R~a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl 318 (368)
T d1f52a2 239 RSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEAL 318 (368)
T ss_dssp TTEEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHH
T ss_pred CCCCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHH
T ss_conf 55314640257886624784478801777899999999765424215899997778724489767623201513799999
Q ss_pred HHHHCCHHHHH---HCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99865989887---35589999999999999999863899789987631
Q gi|254780503|r 414 TLLENTSHFKD---IFGSQFIDMYANLKRNEFETFMQVISPWEREFLLL 459 (461)
Q Consensus 414 ~~l~~d~~l~~---~lg~~~v~~~~~~k~~E~~~~~~~vt~wE~~~yl~ 459 (461)
++|++|+.+++ +||++||+.|+++||+||++|+++||+||+++||.
T Consensus 319 ~al~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~ 367 (368)
T d1f52a2 319 NALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYS 367 (368)
T ss_dssp HHHHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTT
T ss_pred HHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 9996497878876515699999999999999999967999999974168
No 2
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00 E-value=0 Score=712.21 Aligned_cols=333 Identities=29% Similarity=0.464 Sum_probs=296.2
Q ss_pred CCHHHHHHHHHHHHHCCCCC--EEECCCCCEEEEECCCCCCC-------------------CCC-CCCCCCC-CCCCCCC
Q ss_conf 42577789999986102764--02322441799821678888-------------------777-8778888-7766787
Q gi|254780503|r 125 YTPRNVLKRVLNFYAQNELK--PIIAPEIEFYLIAKNEDPDY-------------------PLQ-PPKGRSG-RSILGGQ 181 (461)
Q Consensus 125 ~~PR~iLkr~i~~l~~~G~~--~~~g~E~EF~L~~~~~~~~~-------------------~~~-~~~~~~~-~~~~~~~ 181 (461)
.|||++|||++++++++||. +.+|+|+|||||++...... ... ...+..+ .+...++
T Consensus 2 ~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (374)
T d2bvca2 2 RDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGG 81 (374)
T ss_dssp TCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88699999999999977998703577265899971454455667762013630002467876567888877866565665
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC-CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 777665442899999899767863110221010127-8642011126652113789999999999998630660331123
Q gi|254780503|r 182 SYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEG-PAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAK 260 (461)
Q Consensus 182 ~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atFmpK 260 (461)
+|+....+..++|+++|++.|+.+||+++++|+|+| ||||||++.|+++|+|||+++++|++||+||++||++||||||
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmpK 161 (374)
T d2bvca2 82 YFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPK 161 (374)
T ss_dssp SCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 00020002268999999987874697637632156668258870676306689999999999999999863974777643
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 211356626899987631368742335886--552156665457776422321222076610134420465575433424
Q gi|254780503|r 261 PMQNYPGSAMHIHQSVLDIKSNQNIFSNPD--GSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWG 338 (461)
Q Consensus 261 P~~~~~GsG~H~h~SL~d~~~g~n~f~~~~--~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG 338 (461)
|+.+.+|||||+|+|||+ +++|+|++++ +++|+++++||||||+|++++++|+|||+||||||+|++|||++++||
T Consensus 162 P~~~~~Gsg~H~h~Sl~~--~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg 239 (374)
T d2bvca2 162 PLFGDNGSGMHCHQSLWK--DGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYS 239 (374)
T ss_dssp SSTTSCCCCEEEEEEEEE--TTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEE
T ss_pred ECCCCCCCCEEEEEEECC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEC
T ss_conf 156788766007997415--898865556665556799999999998520988898737874265348987564477404
Q ss_pred CCCCCEEEEECCC--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CHHCCCCCH
Q ss_conf 3345003650223--8865203530358779989999999999999898468887433453000-------311047898
Q gi|254780503|r 339 YDNRTTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSANQ-------EAINLPRGL 409 (461)
Q Consensus 339 ~~NR~~~iRip~~--~~~~~riE~R~~d~~aNPYL~laail~agl~Gi~~~l~p~~~~~~~~~~-------~~~~LP~sL 409 (461)
.+||+++||||.. +++++|||+|++|++|||||++||||+|||+||+++++|++|+.+|+|. +.++||+||
T Consensus 240 ~~nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl 319 (374)
T d2bvca2 240 QRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQL 319 (374)
T ss_dssp ETCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSH
T ss_pred CCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCH
T ss_conf 67665531102446897562688527883310789999999986665641234468777851329965765813250179
Q ss_pred HHHHHHHHCCHHHH---HHCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999986598988---7355899999999999-99999863899789987631
Q gi|254780503|r 410 LEAVTLLENTSHFK---DIFGSQFIDMYANLKR-NEFETFMQVISPWEREFLLL 459 (461)
Q Consensus 410 ~eAl~~l~~d~~l~---~~lg~~~v~~~~~~k~-~E~~~~~~~vt~wE~~~yl~ 459 (461)
.|||++|++|+.++ ++||++||++|+++|| +||++|+++|||||+++||+
T Consensus 320 ~eAl~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~ 373 (374)
T d2bvca2 320 SDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYD 373 (374)
T ss_dssp HHHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTT
T ss_pred HHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
T ss_conf 999999975978787656378999999999999999999968999999960489
No 3
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=99.82 E-value=1.6e-20 Score=151.80 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 989999999717983999999788983312676198873015-6773610000024277434665557788877899960
Q gi|254780503|r 16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNI-PLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPD 94 (461)
Q Consensus 16 ~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD 94 (461)
+.++++++|++++|++|+++|+|++|++|||+||+++|.+.. ..| ..++++++.+ +...+++|++++||
T Consensus 1 s~e~i~~~i~~~~I~~V~~~F~D~~G~~~~k~ip~~~~~~~~~~~g-------~~~d~ss~~~---~~~~~~sDm~l~PD 70 (100)
T d1f52a1 1 SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEG-------KMFDGSSIGG---WKGINESDMVLMPD 70 (100)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEEEGGGCCHHHHHHC-------EEEEGGGSTT---SCCSSCCEEEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCC-------CEECCCCHHH---HCCCCCCCEEEEEC
T ss_conf 9899999999889959999998799866689986899658985468-------3222452111---00113574899877
Q ss_pred CCCCEECCCCCCCEEEEEEECCCCC-CCCC
Q ss_conf 0124538788877099997403357-5212
Q gi|254780503|r 95 LSTLSIVPWEMDPTAQIVCDVVDYN-GKEV 123 (461)
Q Consensus 95 ~~Tl~~lPw~~~~~a~vl~~~~~~d-G~p~ 123 (461)
++|++++||..+++++|+||+++++ |+|+
T Consensus 71 ~~T~~i~Pw~~~~ta~v~CDv~~p~tg~py 100 (100)
T d1f52a1 71 ASTAVIDPFFADSTLIIRCDILEPGTLQGY 100 (100)
T ss_dssp GGGCEECSSCSSCEEEEEEEEECTTTCCCC
T ss_pred CCCEEECCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 780699886899869999998359999979
No 4
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.82 E-value=2.2e-20 Score=150.92 Aligned_cols=98 Identities=27% Similarity=0.300 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 98999999971798399999978898331267619887301-56773610000024277434665557788877899960
Q gi|254780503|r 16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISN-IPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPD 94 (461)
Q Consensus 16 ~~~~v~~~l~~~~I~~V~v~~~Dl~G~~RgK~vp~~~f~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~l~PD 94 (461)
+.++++++|++++|++|+++|+|++|++|+|++|+++|.+. ...| ..++|+++.+ +...+++|++++||
T Consensus 1 T~~ei~~~i~~~~I~~V~~~f~Dl~G~~r~k~vp~~~f~~~~~~~g-------~~~d~s~~~~---~~~~~~sD~~l~PD 70 (100)
T d2bvca1 1 TPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDG-------LAFDGSSIRG---FQSIHESDMLLLPD 70 (100)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCSHHHHHTC-------EEEETTSSTT---SCCGGGCEEEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEHHHHHHHHHHCC-------CCCCCCCCCC---CCCCCCCCEEEEEC
T ss_conf 9899999999889859999997899983299987899749998538-------7545763211---00014553899886
Q ss_pred CCCCEECCCCCCCEEEEEEECCCC-CCCCC
Q ss_conf 012453878887709999740335-75212
Q gi|254780503|r 95 LSTLSIVPWEMDPTAQIVCDVVDY-NGKEV 123 (461)
Q Consensus 95 ~~Tl~~lPw~~~~~a~vl~~~~~~-dG~p~ 123 (461)
++|++++||..+++|+|+||++++ +|+|+
T Consensus 71 ~~T~~v~Pw~~~~ta~v~Cdv~dp~~g~Py 100 (100)
T d2bvca1 71 PETARIDPFRAAKTLNINFFVHDPFTLEPY 100 (100)
T ss_dssp GGGCEECSSCSSCEEEEEEEEECTTTCCBC
T ss_pred CCCCEECCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 452187773899869999997628889989
No 5
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
Probab=98.16 E-value=3e-06 Score=57.94 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=61.4
Q ss_pred CCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
Q ss_conf 76402322441799821678888777877888877667877776654428999998997678631102210101278642
Q gi|254780503|r 142 ELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQF 221 (461)
Q Consensus 142 G~~~~~g~E~EF~L~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~E~gpGQ~ 221 (461)
|-.+.+|+|.||++++.+..... .....+++.+.+. ..-..+.+|..-+|+
T Consensus 7 ~~~~tiGvE~E~~lvd~~~~~~~------------------------~~~~~ll~~~~~~-----~~~~~i~~El~~~qi 57 (368)
T d1r8ga_ 7 SEPFTLGIELEMQVVNPPGYDLS------------------------QDSSMLIDAVKNK-----ITAGEVKHDITESML 57 (368)
T ss_dssp CCTTCEEEEEEEEEEETTTTEEC------------------------SCCHHHHTTTSSS-----CSSSEEEECSSSSEE
T ss_pred CCCCCEEEEEEEEEECCCCCCCC------------------------CCHHHHHHHHHCC-----CCCCCCCCCCCCCEE
T ss_conf 99983489876543679987667------------------------7579999972222-----468863104677669
Q ss_pred CEEECCC-CCHHHHHHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 0111266-5211378999999999999863066033112
Q gi|254780503|r 222 EINIRHG-DPLKLADQVFLFKRTIREAAFKHDIYATFMA 259 (461)
Q Consensus 222 Ei~~~~~-~~l~aaD~~~~~k~~ik~vA~~~G~~atFmp 259 (461)
|++..|. +.-++.+.+...+..+++++.++|+..-.|+
T Consensus 58 El~t~p~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g 96 (368)
T d1r8ga_ 58 ELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGG 96 (368)
T ss_dssp EEECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCS
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 980777799999999999999999998765587524457
No 6
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.70 E-value=8.2 Score=15.65 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHCCC-CCCC
Q ss_conf 89999989976786311022101012-7864
Q gi|254780503|r 191 FDEIIDDIWKFSEKQGLEIDTLIHEE-GPAQ 220 (461)
Q Consensus 191 ~~~~l~~i~~~l~~~Gi~ve~~~~E~-gpGQ 220 (461)
-..+.+.+.+.|...|++-+.+|.|. ||.|
T Consensus 111 p~~m~~~v~~~L~~~G~~~~~i~~E~F~~~~ 141 (143)
T d1gvha3 111 PVGFMQFTAKQLVDLGVKQENIHYECFGPHK 141 (143)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGEEEECSSSCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHEEEECCCCCC
T ss_conf 4899999999999859999998986468975
No 7
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=42.70 E-value=8.5 Score=15.55 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCC-CCCCC
Q ss_conf 9999989976786311022101012-78642
Q gi|254780503|r 192 DEIIDDIWKFSEKQGLEIDTLIHEE-GPAQF 221 (461)
Q Consensus 192 ~~~l~~i~~~l~~~Gi~ve~~~~E~-gpGQ~ 221 (461)
..+.+.+.+.|.+.|++-+.+|.|. ||.|+
T Consensus 110 ~~m~~~v~~~L~~~G~~~~~i~~E~Fg~~~~ 140 (142)
T d1cqxa3 110 IPFMRMQHDALKNLGIHEARIHYEVFGPDLF 140 (142)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEECCCSSCTT
T ss_pred HHHHHHHHHHHHHCCCCHHHEEEEECCCCCC
T ss_conf 1689999999998599888799971589865
No 8
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}
Probab=23.40 E-value=18 Score=13.47 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCC-CCCC
Q ss_conf 9999989976786311022101012-7864
Q gi|254780503|r 192 DEIIDDIWKFSEKQGLEIDTLIHEE-GPAQ 220 (461)
Q Consensus 192 ~~~l~~i~~~l~~~Gi~ve~~~~E~-gpGQ 220 (461)
..+++.+.+.|.++|++-+.+|.|. +|.+
T Consensus 110 ~~m~~~v~~~l~~~Gv~~~~i~~E~F~~~~ 139 (141)
T d1tvca2 110 PGMIDAACELVRSRGIPGEQVFFEKFLPSG 139 (141)
T ss_dssp HHHHHHHHHHHHHHCCCCSEEEECCCSSSC
T ss_pred HHHHHHHHHHHHHCCCCHHHEEEEECCCCC
T ss_conf 999999999999839998997887464777
No 9
>d2b0ja1 a.100.1.11 (A:243-344) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=22.39 E-value=18 Score=13.34 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHCCH
Q ss_conf 9999999989846888743345300031104789899999986598
Q gi|254780503|r 375 ASLACGLLGILQKIEPTPPTMKSANQEAINLPRGLLEAVTLLENTS 420 (461)
Q Consensus 375 ail~agl~Gi~~~l~p~~~~~~~~~~~~~~LP~sL~eAl~~l~~d~ 420 (461)
-+=..|++|+.+.++|..-+..-..=....+-..|..|++.|++.+
T Consensus 54 L~e~~Gi~~m~kaldp~aL~~sa~sM~~~~~~e~L~~al~~lek~~ 99 (102)
T d2b0ja1 54 LMKEKGIANMEEALDPAALLGTADSMCFGPLAEILPTALKVLEKHK 99 (102)
T ss_dssp HHHHHCGGGHHHHSCGGGGGGTGGGGCSGGGTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9998647789985499999857872432178876899999999864
No 10
>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.05 E-value=19 Score=13.30 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHC-----C------CCCCCCCEEECCC--CCH------HHHHHHHHHHH
Q ss_conf 777665442899999899767863110221010-----1------2786420111266--521------13789999999
Q gi|254780503|r 182 SYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIH-----E------EGPAQFEINIRHG--DPL------KLADQVFLFKR 242 (461)
Q Consensus 182 ~y~~~~~~~~~~~l~~i~~~l~~~Gi~ve~~~~-----E------~gpGQ~Ei~~~~~--~~l------~aaD~~~~~k~ 242 (461)
+-+++......+++.+|.+.|..+||.+++... + .++=|||+.+--. ..+ +..-+.+.||.
T Consensus 12 sv~tTS~~~P~eIm~eI~rvL~~lgv~~~~~g~y~l~c~~~~~~~~~~v~fEieV~kv~~~~l~gv~~kR~~Gd~~~yk~ 91 (102)
T d1ul7a_ 12 SMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKN 91 (102)
T ss_dssp CCCCCBCSCHHHHHHHHHHHHHHTTCEEEECSTTCEEEEECSSCGGGCEEEEEEEEECSSSSSEEEEEEEEESCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCHHHHHH
T ss_conf 51468689999999999999998596799859899999834899986079999999927885689999973388799999
Q ss_pred HHHHHHHHH
Q ss_conf 999998630
Q gi|254780503|r 243 TIREAAFKH 251 (461)
Q Consensus 243 ~ik~vA~~~ 251 (461)
++.+|..+.
T Consensus 92 l~~~il~~l 100 (102)
T d1ul7a_ 92 IASKIANEL 100 (102)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
T ss_conf 999999863
No 11
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]}
Probab=21.93 E-value=19 Score=13.28 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 42011126652113789999999999998630660331
Q gi|254780503|r 220 QFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYATF 257 (461)
Q Consensus 220 Q~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~G~~atF 257 (461)
.++++++..+.-..-+-.-.++.+++++|.++|..+++
T Consensus 72 ~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i 109 (117)
T d1z2la2 72 TFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDI 109 (117)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 99999814999999999999999999999983997999
No 12
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]}
Probab=21.67 E-value=16 Score=13.69 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 342577789999986102764023
Q gi|254780503|r 124 TYTPRNVLKRVLNFYAQNELKPII 147 (461)
Q Consensus 124 ~~~PR~iLkr~i~~l~~~G~~~~~ 147 (461)
..+-..-|.+.++.++++|+.+.+
T Consensus 70 df~~~~~l~~~l~~a~~~Gl~vil 93 (354)
T d1tg7a5 70 SAEGIFDLQPFFDAAKEAGIYLLA 93 (354)
T ss_dssp CCCGGGCSHHHHHHHHHHTCEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 453146699999999975998997
No 13
>d1tpna_ g.27.1.1 (A:) Tissue-type plasminogen activator, t-PA {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=16 Score=13.76 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=14.2
Q ss_pred EEEEEECCCCCEEEEEEEHH
Q ss_conf 99999788983312676198
Q gi|254780503|r 32 VECITPDLAGIPRGKMMPSS 51 (461)
Q Consensus 32 V~v~~~Dl~G~~RgK~vp~~ 51 (461)
|.++++| .|..|+..||+.
T Consensus 31 vEyCrC~-~G~~~CHsVPv~ 49 (50)
T d1tpna_ 31 VEYCWCN-SGRAQCHSVPVK 49 (50)
T ss_dssp CEEEECS-SSSCEEEECCCC
T ss_pred EEEEEEC-CCCCCCCCCCCC
T ss_conf 5898978-997422212147
Done!