RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780503|ref|YP_003064916.1| putative glutamine synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>gnl|CDD|30523 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 421 bits (1084), Expect = e-118
Identities = 168/456 (36%), Positives = 237/456 (51%), Gaps = 27/456 (5%)
Query: 17 WEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLH 76
E K LK+N ++ V+ DL G+ RGK +P+ K +S + + S
Sbjct: 3 KEDVLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAG-- 60
Query: 77 SPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLN 136
F + D+ L PDLSTL + PW PTA+++CDV D +G PR+VLKR L
Sbjct: 61 ----FEGIGESDMVLKPDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALA 116
Query: 137 FYAQNELKPI-IAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEII 195
L P + PE+EF+L ++ +P G + + ++E ++
Sbjct: 117 RLKDEGLAPAVVGPELEFFLFDRDGRDPDGGRPADK--------GGYFDVAPLDEAEDFR 168
Query: 196 DDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYA 255
DI + E G+EI+ + HE P QFEIN+R D LK ADQ+ +FK ++E A KH + A
Sbjct: 169 RDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTA 228
Query: 256 TFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG--SETDNFRYFIGGLQKYIPNALV 313
TFM KP GS MH+HQS+ D K N+F++ DG ++ +FIGG+ K+ P
Sbjct: 229 TFMPKPFFGDNGSGMHVHQSLWD-KDGGNLFADEDGYAGLSETALHFIGGILKHAPALTA 287
Query: 314 MLAPYGNSYRRL-VLDMGCPVNNAWGYDNRTTAFRIPFSDA--KTKRIENRLPSSDTNPY 370
+ AP NSY+RL V P AWG NR+ + RIP S A K +R+E R+P D NPY
Sbjct: 288 ITAPTVNSYKRLGVPYEWAPTYIAWGVRNRSASVRIPASGANGKARRVEFRVPDPDANPY 347
Query: 371 LVLAASLACGLLGILQKIEPTPPTMKSANQ------EAINLPRGLLEAVTLLENTSHFKD 424
L AA LA GL GI K+EP P + + + LP L EA+ LE++ ++
Sbjct: 348 LAFAAILAAGLDGIENKLEPGEPVDGNLYELSPEERKEPTLPASLREALDALEDSEFLRE 407
Query: 425 IFGSQFIDMYANLKRNEFETFMQVISPWEREFLLLN 460
G FID Y LKR E+E F ++PWE E L
Sbjct: 408 ALGEDFIDAYIALKRAEWEEFRSRVTPWEFERYLSV 443
>gnl|CDD|143894 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 257
Score = 284 bits (728), Expect = 5e-77
Identities = 101/257 (39%), Positives = 136/257 (52%), Gaps = 6/257 (2%)
Query: 127 PRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIM 186
PR++LKR L A+ P PE EF+L P R G + +
Sbjct: 4 PRSILKRALARLAELGYTPYFGPEQEFFLFDDVRPGGGPPGGYP--DPRGPYYGGYFPVA 61
Query: 187 GINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIRE 246
++E +I DI K E G+ ++ + HE P Q EI+ R D L+ AD + LFK ++
Sbjct: 62 PLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDFRFADALEAADNLQLFKYVVKR 121
Query: 247 AAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSE--TDNFRYFIGGL 304
A KH + ATFM KP+ GS MH HQS+ D K +N+F++ DG ++ R+FIGG+
Sbjct: 122 VAEKHGLTATFMPKPIFGDNGSGMHTHQSLWD-KDGKNLFADGDGYAGLSETARHFIGGI 180
Query: 305 QKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS-DAKTKRIENRLP 363
K+ P AP NSY+RLV PV AWG NR+ + RIP K R+E+RLP
Sbjct: 181 LKHAPAITAYTAPTVNSYKRLVPGTEAPVYIAWGVRNRSASIRIPRGGGPKAGRVEDRLP 240
Query: 364 SSDTNPYLVLAASLACG 380
D NPYL LAA LA G
Sbjct: 241 DPDANPYLALAALLAAG 257
>gnl|CDD|35902 KOG0683, KOG0683, KOG0683, Glutamine synthetase [Amino acid
transport and metabolism].
Length = 380
Score = 56.9 bits (137), Expect = 1e-08
Identities = 74/344 (21%), Positives = 139/344 (40%), Gaps = 32/344 (9%)
Query: 53 FISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIV 112
+ +P Y + +G++ + D+ L P + P+ ++
Sbjct: 53 AEPSSISELPIWNYDGSSTGQAP--------GENSDVYLRP--VAIYPDPFRNGNNILVM 102
Query: 113 CDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGR 172
CD D++GK R R++ + + +P E E+ L+ +P PKG
Sbjct: 103 CDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDA--LDGHPFGWPKG- 159
Query: 173 SGRSILGGQSYSIMGINE--FDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDP 230
G G Y +G + +I++ ++ GL I + E P Q+E + +
Sbjct: 160 -GFPGPQGPYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEG 218
Query: 231 LKLADQVFLFKRTIREAAFKHDIYATFMAKPMQ-NYPGSAMHIHQSVLDIKSNQNIFSNP 289
+ + DQ+++ + + A K + A+F KP+ ++ G+ H + S +++
Sbjct: 219 ISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWNGAGCHTNFSTKEMR-------EA 271
Query: 290 DGSETDNFRYFIGGLQKYIPNALVMLAPYG--NSYRRLV--LDMGCPVNNAWGYDNRTTA 345
G + I L K + P G ++ RRL + G N +WG NR +
Sbjct: 272 GGLKI--IEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPS 329
Query: 346 FRIPFSDAKTKR--IENRLPSSDTNPYLVLAASLACGLLGILQK 387
RIP + A + E+R PSS+ +PY V + LL ++
Sbjct: 330 IRIPRTVAAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLEAVEL 373
>gnl|CDD|33749 COG3968, COG3968, Uncharacterized protein related to glutamine
synthetase [General function prediction only].
Length = 724
Score = 43.1 bits (101), Expect = 2e-04
Identities = 44/197 (22%), Positives = 67/197 (34%), Gaps = 26/197 (13%)
Query: 145 PIIAPEIEFYLIAKN---EDPDYPLQPPKGRSGRSILG-----GQSYSIMGINEFDEIID 196
+ E E++L+ K E PD +GR++ G GQ E +
Sbjct: 216 SNVGAEQEYFLVDKKSYDERPDLIF------TGRTLFGAPPPKGQELDDHYFGAIPERVS 269
Query: 197 DIWKFSEKQ----GLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHD 252
K EK+ G+ T +E P QFEI D L +++ A KH
Sbjct: 270 AFMKDVEKELYALGIPAKTRHNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHG 329
Query: 253 IYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYF------IGGLQK 306
+ KP GS H + S+ + +P DN ++ I + K
Sbjct: 330 LVCLLHEKPFAGINGSGKHNNWSMGT--DDGLNLLDPGDMPHDNKQFLLFCTAVIKAVDK 387
Query: 307 YIPNALVMLAPYGNSYR 323
Y A N +R
Sbjct: 388 YADLLRASAANASNDHR 404
>gnl|CDD|146534 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain.
Length = 84
Score = 34.0 bits (79), Expect = 0.080
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 88 DLRLSPDLSTLSIVPWEMDP--TAQIVCDVVDY 118
D+ L PD ST I P+ DP TA+++CDV D
Sbjct: 52 DMYLKPDPSTAYIDPFRPDPGKTARVICDVYDP 84
>gnl|CDD|37378 KOG2167, KOG2167, KOG2167, Cullins [Cell cycle control, cell
division, chromosome partitioning].
Length = 661
Score = 31.1 bits (70), Expect = 0.68
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 39/132 (29%)
Query: 317 PYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFSDAKTKRIENRLPSSDTNPYLVLAAS 376
N Y + +MG FR FS ++++ +
Sbjct: 62 LQSNPYVLSIWEMGLQ------------LFRAHFSQEPQPFVQSKTFN------------ 97
Query: 377 LACGLLGILQKIEPTPPTMKSANQEAINLPRGLLE-AVTLLENTSHFKDIFGSQFIDMYA 435
G+L+ IE + + EA++ R LL + +L + +K+ F F+ ++
Sbjct: 98 ------GLLKSIE------RERSGEAVD--RSLLRSLLKMLSDLQIYKESFELTFLSLFR 143
Query: 436 NLKRNEFETFMQ 447
L E + Q
Sbjct: 144 ELYAAEGQDKRQ 155
>gnl|CDD|111979 pfam03141, DUF248, Putative methyltransferase. Members of this
family of hypothetical plant proteins are probably
methyltransferases: several of the aligned sequences
either match the methyltransferase profile, or contain a
SAM-binding motif. A protein from Arabidopsis thaliana
contains both. Several family members are described as
ankyrin like.
Length = 506
Score = 28.1 bits (63), Expect = 5.9
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 273 HQSVLDIKSNQN-------IFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYR-R 324
H + + K QN F P G F G YI ++ R R
Sbjct: 65 HTKLAEEKGGQNWVKVEGDKFRFPGGGTQ-----FPHGADAYIDFLAQVIPLIAWGGRVR 119
Query: 325 LVLDMGCPV 333
LD+GC V
Sbjct: 120 TALDVGCGV 128
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins..
Length = 425
Score = 27.6 bits (62), Expect = 7.4
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 406 PRGLLEAVTLLENTSHFKDIF---GSQFIDMYANLKRNEF 442
PRGL + T + N++ +++F QF M+ +R F
Sbjct: 357 PRGLKMSATFIGNSTAIQELFKRISEQFTAMF---RRKAF 393
>gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 27.4 bits (61), Expect = 7.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 212 LIHEEGPAQFEINIRHGDP 230
++ +GP E N R GDP
Sbjct: 274 MLTADGPKVIEFNARFGDP 292
>gnl|CDD|32245 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 27.2 bits (60), Expect = 9.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 6 QSPMNVRGVKNWEQAAKWLKDNRIED 31
P+ RG K E A WL +E
Sbjct: 23 DRPLTERGRKEAELVAAWLAGQGVEP 48
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,889,267
Number of extensions: 320014
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 15
Length of query: 461
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 364
Effective length of database: 4,167,664
Effective search space: 1517029696
Effective search space used: 1517029696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)