RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >gnl|CDD|30523 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]. Length = 443 Score = 421 bits (1084), Expect = e-118 Identities = 168/456 (36%), Positives = 237/456 (51%), Gaps = 27/456 (5%) Query: 17 WEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLH 76 E K LK+N ++ V+ DL G+ RGK +P+ K +S + + S Sbjct: 3 KEDVLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQLFEGGVVFDGSSIAG-- 60 Query: 77 SPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKRVLN 136 F + D+ L PDLSTL + PW PTA+++CDV D +G PR+VLKR L Sbjct: 61 ----FEGIGESDMVLKPDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALA 116 Query: 137 FYAQNELKPI-IAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEII 195 L P + PE+EF+L ++ +P G + + ++E ++ Sbjct: 117 RLKDEGLAPAVVGPELEFFLFDRDGRDPDGGRPADK--------GGYFDVAPLDEAEDFR 168 Query: 196 DDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHDIYA 255 DI + E G+EI+ + HE P QFEIN+R D LK ADQ+ +FK ++E A KH + A Sbjct: 169 RDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTA 228 Query: 256 TFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDG--SETDNFRYFIGGLQKYIPNALV 313 TFM KP GS MH+HQS+ D K N+F++ DG ++ +FIGG+ K+ P Sbjct: 229 TFMPKPFFGDNGSGMHVHQSLWD-KDGGNLFADEDGYAGLSETALHFIGGILKHAPALTA 287 Query: 314 MLAPYGNSYRRL-VLDMGCPVNNAWGYDNRTTAFRIPFSDA--KTKRIENRLPSSDTNPY 370 + AP NSY+RL V P AWG NR+ + RIP S A K +R+E R+P D NPY Sbjct: 288 ITAPTVNSYKRLGVPYEWAPTYIAWGVRNRSASVRIPASGANGKARRVEFRVPDPDANPY 347 Query: 371 LVLAASLACGLLGILQKIEPTPPTMKSANQ------EAINLPRGLLEAVTLLENTSHFKD 424 L AA LA GL GI K+EP P + + + LP L EA+ LE++ ++ Sbjct: 348 LAFAAILAAGLDGIENKLEPGEPVDGNLYELSPEERKEPTLPASLREALDALEDSEFLRE 407 Query: 425 IFGSQFIDMYANLKRNEFETFMQVISPWEREFLLLN 460 G FID Y LKR E+E F ++PWE E L Sbjct: 408 ALGEDFIDAYIALKRAEWEEFRSRVTPWEFERYLSV 443 >gnl|CDD|143894 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain. Length = 257 Score = 284 bits (728), Expect = 5e-77 Identities = 101/257 (39%), Positives = 136/257 (52%), Gaps = 6/257 (2%) Query: 127 PRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIM 186 PR++LKR L A+ P PE EF+L P R G + + Sbjct: 4 PRSILKRALARLAELGYTPYFGPEQEFFLFDDVRPGGGPPGGYP--DPRGPYYGGYFPVA 61 Query: 187 GINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIRE 246 ++E +I DI K E G+ ++ + HE P Q EI+ R D L+ AD + LFK ++ Sbjct: 62 PLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDFRFADALEAADNLQLFKYVVKR 121 Query: 247 AAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSE--TDNFRYFIGGL 304 A KH + ATFM KP+ GS MH HQS+ D K +N+F++ DG ++ R+FIGG+ Sbjct: 122 VAEKHGLTATFMPKPIFGDNGSGMHTHQSLWD-KDGKNLFADGDGYAGLSETARHFIGGI 180 Query: 305 QKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS-DAKTKRIENRLP 363 K+ P AP NSY+RLV PV AWG NR+ + RIP K R+E+RLP Sbjct: 181 LKHAPAITAYTAPTVNSYKRLVPGTEAPVYIAWGVRNRSASIRIPRGGGPKAGRVEDRLP 240 Query: 364 SSDTNPYLVLAASLACG 380 D NPYL LAA LA G Sbjct: 241 DPDANPYLALAALLAAG 257 >gnl|CDD|35902 KOG0683, KOG0683, KOG0683, Glutamine synthetase [Amino acid transport and metabolism]. Length = 380 Score = 56.9 bits (137), Expect = 1e-08 Identities = 74/344 (21%), Positives = 139/344 (40%), Gaps = 32/344 (9%) Query: 53 FISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIV 112 + +P Y + +G++ + D+ L P + P+ ++ Sbjct: 53 AEPSSISELPIWNYDGSSTGQAP--------GENSDVYLRP--VAIYPDPFRNGNNILVM 102 Query: 113 CDVVDYNGKEVTYTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGR 172 CD D++GK R R++ + + +P E E+ L+ +P PKG Sbjct: 103 CDTYDFDGKPTETNKRVACARIMPKLSTKDTEPWFGMEQEYTLLDA--LDGHPFGWPKG- 159 Query: 173 SGRSILGGQSYSIMGINE--FDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDP 230 G G Y +G + +I++ ++ GL I + E P Q+E + + Sbjct: 160 -GFPGPQGPYYCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEG 218 Query: 231 LKLADQVFLFKRTIREAAFKHDIYATFMAKPMQ-NYPGSAMHIHQSVLDIKSNQNIFSNP 289 + + DQ+++ + + A K + A+F KP+ ++ G+ H + S +++ Sbjct: 219 ISMGDQLWMARYILHRVAEKFGVIASFDPKPILGDWNGAGCHTNFSTKEMR-------EA 271 Query: 290 DGSETDNFRYFIGGLQKYIPNALVMLAPYG--NSYRRLV--LDMGCPVNNAWGYDNRTTA 345 G + I L K + P G ++ RRL + G N +WG NR + Sbjct: 272 GGLKI--IEEAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPS 329 Query: 346 FRIPFSDAKTKR--IENRLPSSDTNPYLVLAASLACGLLGILQK 387 RIP + A + E+R PSS+ +PY V + LL ++ Sbjct: 330 IRIPRTVAAEGKGYFEDRRPSSNCDPYAVTLMIIPTTLLEAVEL 373 >gnl|CDD|33749 COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]. Length = 724 Score = 43.1 bits (101), Expect = 2e-04 Identities = 44/197 (22%), Positives = 67/197 (34%), Gaps = 26/197 (13%) Query: 145 PIIAPEIEFYLIAKN---EDPDYPLQPPKGRSGRSILG-----GQSYSIMGINEFDEIID 196 + E E++L+ K E PD +GR++ G GQ E + Sbjct: 216 SNVGAEQEYFLVDKKSYDERPDLIF------TGRTLFGAPPPKGQELDDHYFGAIPERVS 269 Query: 197 DIWKFSEKQ----GLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIREAAFKHD 252 K EK+ G+ T +E P QFEI D L +++ A KH Sbjct: 270 AFMKDVEKELYALGIPAKTRHNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHG 329 Query: 253 IYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYF------IGGLQK 306 + KP GS H + S+ + +P DN ++ I + K Sbjct: 330 LVCLLHEKPFAGINGSGKHNNWSMGT--DDGLNLLDPGDMPHDNKQFLLFCTAVIKAVDK 387 Query: 307 YIPNALVMLAPYGNSYR 323 Y A N +R Sbjct: 388 YADLLRASAANASNDHR 404 >gnl|CDD|146534 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain. Length = 84 Score = 34.0 bits (79), Expect = 0.080 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Query: 88 DLRLSPDLSTLSIVPWEMDP--TAQIVCDVVDY 118 D+ L PD ST I P+ DP TA+++CDV D Sbjct: 52 DMYLKPDPSTAYIDPFRPDPGKTARVICDVYDP 84 >gnl|CDD|37378 KOG2167, KOG2167, KOG2167, Cullins [Cell cycle control, cell division, chromosome partitioning]. Length = 661 Score = 31.1 bits (70), Expect = 0.68 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 39/132 (29%) Query: 317 PYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIPFSDAKTKRIENRLPSSDTNPYLVLAAS 376 N Y + +MG FR FS ++++ + Sbjct: 62 LQSNPYVLSIWEMGLQ------------LFRAHFSQEPQPFVQSKTFN------------ 97 Query: 377 LACGLLGILQKIEPTPPTMKSANQEAINLPRGLLE-AVTLLENTSHFKDIFGSQFIDMYA 435 G+L+ IE + + EA++ R LL + +L + +K+ F F+ ++ Sbjct: 98 ------GLLKSIE------RERSGEAVD--RSLLRSLLKMLSDLQIYKESFELTFLSLFR 143 Query: 436 NLKRNEFETFMQ 447 L E + Q Sbjct: 144 ELYAAEGQDKRQ 155 >gnl|CDD|111979 pfam03141, DUF248, Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like. Length = 506 Score = 28.1 bits (63), Expect = 5.9 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 13/69 (18%) Query: 273 HQSVLDIKSNQN-------IFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYR-R 324 H + + K QN F P G F G YI ++ R R Sbjct: 65 HTKLAEEKGGQNWVKVEGDKFRFPGGGTQ-----FPHGADAYIDFLAQVIPLIAWGGRVR 119 Query: 325 LVLDMGCPV 333 LD+GC V Sbjct: 120 TALDVGCGV 128 >gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins.. Length = 425 Score = 27.6 bits (62), Expect = 7.4 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%) Query: 406 PRGLLEAVTLLENTSHFKDIF---GSQFIDMYANLKRNEF 442 PRGL + T + N++ +++F QF M+ +R F Sbjct: 357 PRGLKMSATFIGNSTAIQELFKRISEQFTAMF---RRKAF 393 >gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]. Length = 428 Score = 27.4 bits (61), Expect = 7.4 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 212 LIHEEGPAQFEINIRHGDP 230 ++ +GP E N R GDP Sbjct: 274 MLTADGPKVIEFNARFGDP 292 >gnl|CDD|32245 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]. Length = 163 Score = 27.2 bits (60), Expect = 9.2 Identities = 9/26 (34%), Positives = 11/26 (42%) Query: 6 QSPMNVRGVKNWEQAAKWLKDNRIED 31 P+ RG K E A WL +E Sbjct: 23 DRPLTERGRKEAELVAAWLAGQGVEP 48 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.137 0.412 Gapped Lambda K H 0.267 0.0833 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,889,267 Number of extensions: 320014 Number of successful extensions: 683 Number of sequences better than 10.0: 1 Number of HSP's gapped: 668 Number of HSP's successfully gapped: 15 Length of query: 461 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 364 Effective length of database: 4,167,664 Effective search space: 1517029696 Effective search space used: 1517029696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.3 bits)