RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780503|ref|YP_003064916.1| putative glutamine synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(461 letters)
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET:
P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:115-416)
Length = 302
Score = 189 bits (480), Expect = 7e-49
Identities = 83/298 (27%), Positives = 123/298 (41%), Gaps = 26/298 (8%)
Query: 127 PRNVLKRVLNFYAQNELKPI--IAPEIEFYLI---------------------AKNEDPD 163
PRN+ ++ N+ + E EFY+ N
Sbjct: 2 PRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAA 61
Query: 164 YPLQPPKGRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEE-GPAQFE 222
R + G + + +++ ++ D + G ++ HE Q E
Sbjct: 62 TEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAE 121
Query: 223 INIRHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSN 282
IN + L AD + L+K I+ A+++ TFM KP+ GS MH HQS+ +
Sbjct: 122 INYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAP 181
Query: 283 QNIFSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNR 342
+D R++IGGL + P+ L P NSY+RLV P+N + NR
Sbjct: 182 LMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNR 241
Query: 343 TTAFRIPFS--DAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSA 398
+ RIP + + K KR+E R P S NPYL +A L GL GI KIEP P K
Sbjct: 242 SACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDL 299
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A
{Salmonella typhimurium} (A:99-399)
Length = 301
Score = 179 bits (455), Expect = 5e-46
Identities = 81/290 (27%), Positives = 122/290 (42%), Gaps = 23/290 (7%)
Query: 127 PRNVLKRVLNFYAQNELKPI--IAPEIEFYLI------AKNEDPDYPLQPPKG------- 171
PR++ KR ++ + PE EF+L A + +G
Sbjct: 6 PRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTK 65
Query: 172 -----RSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEE-GPAQFEINI 225
+ R + G + + ++ +I ++ E+ GL ++ HE Q E+
Sbjct: 66 YEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVAT 125
Query: 226 RHGDPLKLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNI 285
R K AD++ ++K + A + ATFM KPM GS MH H S+
Sbjct: 126 RFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAK-NGTNLF 184
Query: 286 FSNPDGSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTA 345
+ ++ Y+IGG+ K+ + P NSY+RLV PV A+ NR+ +
Sbjct: 185 SGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSAS 244
Query: 346 FRIPF-SDAKTKRIENRLPSSDTNPYLVLAASLACGLLGILQKIEPTPPT 394
RIP + K +RIE R P NPYL AA L GL GI KI P P
Sbjct: 245 IRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPM 294
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain,
acetylation, cytoplasm, ligase, UBL conjugation; HET:
FLC; 2.95A {Saccharomyces cerevisiae} (A:107-370)
Length = 264
Score = 172 bits (437), Expect = 7e-44
Identities = 45/277 (16%), Positives = 88/277 (31%), Gaps = 16/277 (5%)
Query: 125 YTPRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYS 184
+ R+ ++ + + + E E+ L D PKG
Sbjct: 2 FNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMY---DDVYGWPKGGYPAPQGPYYCGV 56
Query: 185 IMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTI 244
G ++I+ ++ GLEI + E P+Q+E + + + DQ+++ + +
Sbjct: 57 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFL 116
Query: 245 REAAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGL 304
A + I +F KP++ A T I L
Sbjct: 117 HRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKE--------MRQPGGTKYIEQAIEKL 168
Query: 305 QKYIPNALVMLAPYGNSYRRLVLDMGCPVNNAWGYDNRTTAFRIP--FSDAKTKRIENRL 362
K + + + + + G NR ++ RIP + E+R
Sbjct: 169 SKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRR 228
Query: 363 PSSDTNPYLVLAASLACGLLGILQKIEPTPPTMKSAN 399
P+S+ +PYLV I + ++
Sbjct: 229 PASNIDPYLVTGIMCETVCGAIDNADMT-KEFERESS 264
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays}
PDB: 2d3b_A* 2d3c_A* (A:105-356)
Length = 252
Score = 172 bits (435), Expect = 1e-43
Identities = 43/260 (16%), Positives = 86/260 (33%), Gaps = 16/260 (6%)
Query: 127 PRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIM 186
R ++ + +P E E+ L+ K+ + PL P G
Sbjct: 2 KRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNW--PLGWPIGGFPGPQGPYYCGIGA 59
Query: 187 GINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIRE 246
+ +I+D +K G+ I + E P Q+E + + DQV++ + +
Sbjct: 60 EKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILER 119
Query: 247 AAFKHDIYATFMAKPMQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQK 306
+ TF KP+ A + + + +
Sbjct: 120 ITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGY----------EVIKAAIEKL 169
Query: 307 YIPNALVMLAPYGNSYRRLVLDM--GCPVNNAWGYDNRTTAFRIPFSDAKTK--RIENRL 362
+ + + A + RRL +WG NR + R+ + E+R
Sbjct: 170 KLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRR 229
Query: 363 PSSDTNPYLVLAASLACGLL 382
P+S+ +PY+V + ++
Sbjct: 230 PASNMDPYVVTSMIAETTIV 249
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase,
structural genomics, structural genomics consortium,
SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
(A:129-384)
Length = 256
Score = 165 bits (419), Expect = 8e-42
Identities = 47/263 (17%), Positives = 94/263 (35%), Gaps = 17/263 (6%)
Query: 127 PRNVLKRVLNFYAQNELKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIM 186
R+ KR+++ + P E E+ L+ + +P P
Sbjct: 4 LRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTD---GHPFGWPSNGFPGPQGPYYCGVGA 58
Query: 187 GINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGDPLKLADQVFLFKRTIRE 246
+I++ ++ G++I E PAQ+E I + + + D +++ + +
Sbjct: 59 DRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHR 118
Query: 247 AAFKHDIYATFMAKPMQN-YPGSAMHIHQSVLDIKSNQNIFSNPDGSETDNFRYFIGGLQ 305
+ ATF KP+ + G+ H + S ++ + + +
Sbjct: 119 VCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEA-------IEKLSKR 171
Query: 306 KYIPNALVMLAPYGNSYRRLVLDMGCPVNNAW--GYDNRTTAFRIPFS--DAKTKRIENR 361
++ RRL N + G NR+ + RIP + K E+R
Sbjct: 172 HQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDR 231
Query: 362 LPSSDTNPYLVLAASLACGLLGI 384
PS++ +P+ V A + LL
Sbjct: 232 RPSANCDPFSVTEALIRTCLLNE 254
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A
{Mus musculus} (A:96-127,A:223-358)
Length = 168
Score = 135 bits (340), Expect = 1e-32
Identities = 35/139 (25%), Positives = 49/139 (35%), Gaps = 4/139 (2%)
Query: 262 MQNYPGSAMHIHQSVLDIKSNQNIFSNPDGSE-TDNFRYFIGGLQKYIPNALVMLAPYGN 320
G+ H V + N F+ G+ T ++ GL A A
Sbjct: 32 FAAAAGAGSHSIWDVGA--AGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAA 89
Query: 321 SYRRLVLDMGCPVNNAWGYDNRTTAFRIPFS-DAKTKRIENRLPSSDTNPYLVLAASLAC 379
+ AWG A I + AK +IEN+ ++ NPYLVLAA++A
Sbjct: 90 AAAAAAAGAAAAAATAWGAAAAACALNIAAAAAAKGAQIENKAGAAAANPYLVLAATVAA 149
Query: 380 GLLGILQKIEPTPPTMKSA 398
GL GI A
Sbjct: 150 GLDGIQSAGAAAGAAAADA 168
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A
{Salmonella typhimurium} (A:1-98)
Length = 98
Score = 89.8 bits (223), Expect = 6e-19
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESL 75
+ E L ++ ++ V+ D G + +P+ + + + +
Sbjct: 1 SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQV--------NAEFFEEGKMFDG- 51
Query: 76 HSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKE 122
S + + D+ L PD ST I P+ D T I CD+++ +
Sbjct: 52 SSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQ 98
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET:
P3S ADP; 2.1A {Mycobacterium tuberculosis} (A:1-114)
Length = 114
Score = 85.7 bits (212), Expect = 1e-17
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 12 RGVKNWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTIS 71
K + K KD ++E V+ DL GI + +P+S F +++ ++
Sbjct: 9 GTEKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAF--------DKSVFDDGLA 60
Query: 72 GESLHSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVDYNGKEVTYTPRN 129
+ S F + + D+ L PD T I P+ T I V D T P +
Sbjct: 61 FDG-SSIRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHD----PFTLEPYS 113
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A
{Mus musculus} (A:1-95)
Length = 95
Score = 83.3 bits (206), Expect = 6e-17
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 16 NWEQAAKWLKDNRIEDVECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESL 75
+ E L ++ V D AG R K +P+ F I+ +
Sbjct: 1 SAEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFF--------EKVIHARGYLEDG- 51
Query: 76 HSPYLFHNERDGDLRLSPDLSTLSIVPWEMDPTAQIVCDVVD 117
D+ L P+LST ++ TA ++CD
Sbjct: 52 EVNAGAAGAAASDIVLMPELSTAAVAAAAAAATAAVICDGGA 93
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A
{Mus musculus} (A:128-222)
Length = 95
Score = 81.1 bits (200), Expect = 3e-16
Identities = 12/92 (13%), Positives = 20/92 (21%), Gaps = 2/92 (2%)
Query: 171 GRSGRSILGGQSYSIMGINEFDEIIDDIWKFSEKQGLEIDTLIHEEGPAQFEINIRHGD- 229
G S+ G EI
Sbjct: 4 GVPEVINSKTISFPASTTAAAA-DQPQEAAAGGAAGAAAGAAGGAAAAGAAEICFLPEAA 62
Query: 230 PLKLADQVFLFKRTIREAAFKHDIYATFMAKP 261
AD F + ++E A +++ A+ A
Sbjct: 63 GAAAADNAFTLRTGLQEVARRYNAIASAAAAA 94
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A
{Mus musculus} (A:359-421)
Length = 63
Score = 59.2 bits (144), Expect = 1e-09
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 398 ANQEAINLPRGLLEAVTLLENTSHF-KDIFGSQFIDMYANLKRNEFETFMQVISPWEREF 456
A +P + +A+ LE + K G FI + E E + E
Sbjct: 1 AAAAPSEIPGKMEDALAALEQDAECLKAGLGEAFIRAAVAAAKYELENE---ETDAEGNK 57
Query: 457 LL 458
L
Sbjct: 58 FL 59
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} (E:47-177)
Length = 131
Score = 31.2 bits (70), Expect = 0.27
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 32 VECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGDLRL 91
E TP L G + P R + + L R + +
Sbjct: 32 AEMGTPKLEKPNEGYLEFFVDCS---ASATPEFEGRGGDDLGTEIANTL---YRIFNNKS 85
Query: 92 SPDLSTLSIVPWEMDPTAQIVCDVVDYNG 120
S DL TL I P E + +++ G
Sbjct: 86 SVDLKTLCISPREHCWVLYVDVLLLECGG 114
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase,
cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA
processing; 3.00A {Saccharomyces cerevisiae} (A:29-163)
Length = 135
Score = 30.0 bits (67), Expect = 0.70
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 32 VECITPDLAGIPRGKMMPSSKFISNIPLTVPSAIYRHTISG-ESLHSPYLFHNERDGDLR 90
+ P G + S++ P+ + E L S + E+
Sbjct: 34 CQIAQPYEDRPFEGLFVISTEIS---PMAGSQFENGNITGEDEVLCSRII---EKSVRRS 87
Query: 91 LSPDLSTLSIVPWEMDPTAQIVCDVVDYNG 120
+ D+ L IV + +D +G
Sbjct: 88 GALDVEGLCIVAGSKCWAVRADVHFLDCDG 117
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1, methyltransferase
domain, structural genomics; HET: MSE; 1.60A
{Mesorhizobium loti MAFF303099} (A:1-151,A:194-243)
Length = 201
Score = 28.7 bits (63), Expect = 1.7
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 283 QNIFSNPD-GSETDNFRYFIGGLQKYIPNALVMLAPYGNSYRRLVLDMGC 331
QNI+ PD + I GL + A ++D+GC
Sbjct: 4 QNIYDQPDFFAGYSQLGRSIEGLDGAAEWPA-LRAXLPEVGGLRIVDLGC 52
>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold,
hydrolase; HET: DRM; 1.40A {Homo sapiens}
(A:1-14,A:91-197)
Length = 121
Score = 27.9 bits (62), Expect = 3.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 2 NKNDQSPMNVRGVKNWEQAAKWLKDNR 28
N++ Q R + +W K + D++
Sbjct: 92 NQHLQLQPPRRRLHSWADDWKAILDSK 118
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase;
HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*
(A:1-12,A:89-193)
Length = 117
Score = 27.1 bits (60), Expect = 4.5
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 2 NKNDQSPMNVRGVKNWEQAAKWLKDNR 28
N++ P R + +W + + D++
Sbjct: 90 NRHLVLPPTRRRLLSWSDNWREILDSK 116
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, multidrug-binding
protein; HET: P4P; 2.40A {Bacillus subtilis} (A:121-278)
Length = 158
Score = 27.0 bits (59), Expect = 4.5
Identities = 6/70 (8%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 150 EIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGINEFDEI---IDDIWKFSEKQG 206
++ +I G+ I + + + K+ +
Sbjct: 65 MTYRHIFTPVLTNKQISSITPDMEITTIPKGRYACIAYNFSPEHYFLNLQKLIKYIADRQ 124
Query: 207 LEIDTLIHEE 216
L + + ++E
Sbjct: 125 LTVVSDVYEL 134
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel,
Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A
{Escherichia coli} (A:97-257,A:389-647)
Length = 420
Score = 26.4 bits (58), Expect = 7.3
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 232 KLADQVFLFKRTIREAAFKHDIYATFMAKPMQNYPGSAMHIHQSV 276
KL +Q L + TI++A + A P + + +H V
Sbjct: 14 KLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEV 58
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural
genomics, JCSG, protein structure initiative, PSI; 2.30A
{Thermotoga maritima} (A:1-101,A:193-412)
Length = 321
Score = 26.4 bits (58), Expect = 7.5
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 188 INEFDEIIDDIWKFSEKQGLEIDTLIH------EEGPAQFEINIRHGDP 230
I + +E+ D EK+G ++ + P E N+R GDP
Sbjct: 154 IKKIEELFDKTLWGVEKEGYAYRGFLYLGLXLHDGDPYILEYNVRLGDP 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 25.9 bits (57), Expect = 9.7
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 99 SIVPWEMDPTAQIVCDVVDYNGKEVTYTPRNVLKR 133
++ E +V +VV Y G T + + R
Sbjct: 4 DVMSIE-----SLV-EVVFYRG----MTMQVAVPR 28
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,628,177
Number of extensions: 170007
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 25
Length of query: 461
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 369
Effective length of database: 1,845,989
Effective search space: 681169941
Effective search space used: 681169941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)