RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate
1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>gnl|CDD|180222 PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.
Length = 495
Score = 652 bits (1686), Expect = 0.0
Identities = 233/493 (47%), Positives = 316/493 (64%), Gaps = 19/493 (3%)
Query: 10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISS--RIIGICRIKMTVESYRSFVDKE 67
D +IFG TGDLA+RKL PALYN Y + + RIIG+ R + E +R V +
Sbjct: 9 PCDLVIFGATGDLARRKLLPALYNLY---KAGLLPEDFRIIGVARRDWSDEDFREVVREA 65
Query: 68 LQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-IDKTR----IRVFYLA 122
L+ + + ++ ++FLS ++Y++ DV +E L +LL+ +D+ R RVFYLA
Sbjct: 66 LKEFART-PFDEEVWERFLSRLYYVSGDVTDPESYERLKELLEELDEERGTGGNRVFYLA 124
Query: 123 MSSAFFGKISQRIHANNLVTEH--TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRID 180
+ FG I + + A L RVV+EKP G +L+SA+E++ ++FKE QI+RID
Sbjct: 125 TPPSLFGTICENLAAAGLNEGGGWRRVVIEKPFGHDLASARELNDQVGEVFKEEQIYRID 184
Query: 181 HYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMI 240
HYLGKE VQ L+ RFAN +E LWN YIDHVQIT AET+GVE R YY+ +GALRDM+
Sbjct: 185 HYLGKETVQNLLALRFANALFEPLWNRNYIDHVQITVAETVGVEGRGGYYDKSGALRDMV 244
Query: 241 QNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGI 300
QNHLLQLL LVAME P S++A SI++EK+KVL+AL+ ITPE+V++ TVRGQY +G I G
Sbjct: 245 QNHLLQLLALVAMEPPASLDADSIRDEKVKVLRALRPITPEDVKENTVRGQYTAGWIGGK 304
Query: 301 PVKGYLEEIPLGI---SDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKP 357
PV GY EE G+ S TETFVA+K IDN RW+G+PFYLRTGK L K ++EIVI KP
Sbjct: 305 PVPGYREE--EGVNPDSTTETFVALKLEIDNWRWAGVPFYLRTGKRLPKKVTEIVIVFKP 362
Query: 358 APCTIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKR 417
P +F+ ++ NKL++R+Q + I K M+L+ L +
Sbjct: 363 PPHNLFEESAEELGPNKLVIRIQPDEGISLRFNAKV-PGEGMELRPVKLDFSYSEAFGEA 421
Query: 418 TPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQS 477
+P+ YERLL+D++ +QTLF+ DEVE WKW D IL++W+ Y AGTWGP+ +
Sbjct: 422 SPEAYERLLLDVMLGDQTLFVRRDEVEAAWKWVDPILEAWEADGGPPPPYPAGTWGPEAA 481
Query: 478 DVLLQKDGRRWHN 490
D LL +DGR W
Sbjct: 482 DALLARDGRSWRE 494
>gnl|CDD|183793 PRK12853, PRK12853, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 482
Score = 566 bits (1462), Expect = e-162
Identities = 209/484 (43%), Positives = 287/484 (59%), Gaps = 17/484 (3%)
Query: 11 SDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQR 70
+IFG TGDLA+RKL PALY RIIG+ R + E +R+ V + L+
Sbjct: 9 CTLVIFGATGDLARRKLLPALYR-LARAGLLPEDLRIIGVGRDDWSDEQWRARVRESLRA 67
Query: 71 YLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-IDKTRIRVFYLAMSSAFFG 129
+ DG ++ + + + Y+ DV +L + + VFYLA+ + F
Sbjct: 68 FGADG-FDDAVWDRLAARLSYVQGDVTDP---ADYARLAEALGPGGNPVFYLAVPPSLFA 123
Query: 130 KISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQ 189
+ + + A L+ E RVVLEKP G +L+SA+ ++A K+F E QI+RIDH+LGKE VQ
Sbjct: 124 PVVENLGAAGLLPEGRRVVLEKPFGHDLASARALNATLAKVFDEDQIYRIDHFLGKETVQ 183
Query: 190 GLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLC 249
L+ RFAN E LWN +IDHVQIT AET+GVE R +Y+ TGALRDM+QNHLLQLL
Sbjct: 184 NLLALRFANALLEPLWNRNHIDHVQITVAETLGVEGRGGFYDATGALRDMVQNHLLQLLA 243
Query: 250 LVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEEI 309
LVAME P S +A ++++EK KVL+A++ + P++V TVRGQY +G + G PV GY EE
Sbjct: 244 LVAMEPPASFDADAVRDEKAKVLRAIRPLDPDDVH--TVRGQYTAGTVGGEPVPGYREE- 300
Query: 310 PLGI---SDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQ 366
G+ S TETFVA+K IDN RW+G+PFYLRTGK LA+ +EIVI KP P +F
Sbjct: 301 -PGVDPDSRTETFVALKLEIDNWRWAGVPFYLRTGKRLAERRTEIVITFKPVPHALFRGT 359
Query: 367 MSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDGYERLL 426
N+L++RLQ + I + K M+L+ L +R + YERLL
Sbjct: 360 -GVEPPNRLVIRLQPDEGISLELNVKRPGPG-MRLRPVELDADYADD--ERPLEAYERLL 415
Query: 427 MDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKDGR 486
+D++ + TLF+ DEVE W+ D +L +W Y AG+WGP +D LL +DGR
Sbjct: 416 LDVLRGDPTLFVRADEVEAAWRIVDPVLDAWAADPVPPHEYPAGSWGPAAADALLARDGR 475
Query: 487 RWHN 490
W
Sbjct: 476 GWRE 479
>gnl|CDD|162079 TIGR00871, zwf, glucose-6-phosphate 1-dehydrogenase. This is a
well-studied enzyme family, with sequences available
from well over 50 species. The trusted cutoff is set
above the score for the Drosophila melanogaster CG7140
gene product, a homolog of unknown function. G6PD
homologs from the bacteria Aquifex aeolicus and
Helicobacter pylori lack several motifs well conserved
most other members, were omitted from the seed
alignment, and score well below the trusted cutoff.
Length = 482
Score = 490 bits (1263), Expect = e-139
Identities = 214/491 (43%), Positives = 305/491 (62%), Gaps = 21/491 (4%)
Query: 10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQ 69
+IFG +GDLA++KLFPALY + N RI+G+ R ++VE +R V + +
Sbjct: 2 PCILVIFGASGDLARKKLFPALYRLFRNGLLPP-DFRIVGVARRDLSVEDFRKQVREAII 60
Query: 70 RYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-IDKTR----IRVFYLAMS 124
++ + ++ F + Y++ D + + ++ L + L+ +DKTR R+FYLA
Sbjct: 61 KFETEEI--DEQLDDFAQRLSYVSGDYDDDESYDSLNEHLEQLDKTRGTEGNRLFYLATP 118
Query: 125 SAFFGKISQRIHANNLVTEH-TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYL 183
+ FG I +++ + L + +RVV+EKP G +L+SAQE++ R +FKE QI+RIDHYL
Sbjct: 119 PSVFGTIIKQLKKHGLNEQGWSRVVVEKPFGHDLASAQELNKQLRAVFKEDQIYRIDHYL 178
Query: 184 GKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNH 243
GKE VQ L+V RFAN +E LWN +YIDHVQIT AE+ GVE R YY+ +GALRDM+QNH
Sbjct: 179 GKETVQNLLVLRFANQIFEPLWNRRYIDHVQITFAESFGVEGRGGYYDKSGALRDMVQNH 238
Query: 244 LLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVK 303
LLQLLCLVAME P S +A SI++EK+KVL+AL+ I P++ VRGQY +G I G+ V
Sbjct: 239 LLQLLCLVAMEPPASFDADSIRDEKVKVLKALRPIDPDDNN--VVRGQYGAGEIGGVSVP 296
Query: 304 GYLEE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361
GYLEE + S TETF A+K IDN RW+G+PFYLRTGK L + ++EI I K P
Sbjct: 297 GYLEEEGVDKD-STTETFAALKLYIDNWRWAGVPFYLRTGKRLPEKVTEIRIQFKDVPLL 355
Query: 362 IFDHQMSKIETNKLILRLQNNGEIE-QFITTKDHSTSNMKLKTTALRICCCSKRIKRTPD 420
+F N+L++R+Q + + +F K N + + L S+ + P+
Sbjct: 356 LFKQNE---RNNELVIRIQPDEGVYLKFNAKKP--GLNFETRPVKLDFSYGSRFGELLPE 410
Query: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQ-KVDYYAAGTWGPDQSDV 479
YERLL+D + +QTLF+ DEVEE W+ IL++W Y AG+WGP ++D
Sbjct: 411 AYERLLLDALLGDQTLFVRDDEVEEAWRIVTPILEAWAANKGPSPPNYPAGSWGPKEADE 470
Query: 480 LLQKDGRRWHN 490
L++KDGR W
Sbjct: 471 LIKKDGRSWRK 481
>gnl|CDD|183794 PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 484
Score = 397 bits (1023), Expect = e-111
Identities = 171/506 (33%), Positives = 253/506 (50%), Gaps = 59/506 (11%)
Query: 12 DFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRY 71
F++FG TGDLAKRKL P L++ RI+G R ++ E++R L +
Sbjct: 13 VFVLFGATGDLAKRKLLPGLFHLARAGLLPP-DWRIVGTGRGDVSAEAFREHARDALDEF 71
Query: 72 LKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRI-------RVFYLAMS 124
+ + + +F + Y+ L + R V YLA+
Sbjct: 72 GA-RKLDDGEWARFAKRLRYVPGGFLSAGPGALAAA---VAAARAELGGDARLVHYLAVP 127
Query: 125 SAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLG 184
+ F +++ + L E +RVV+EKP G++L+SA+ ++A ++F ESQIFRIDH+LG
Sbjct: 128 PSAFLDVTRALGEAGLA-EGSRVVMEKPFGTDLASAEALNAAVHEVFDESQIFRIDHFLG 186
Query: 185 KEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHL 244
KEA Q ++ FRFAN +E +WN ++IDHVQI ET+GV+ R +Y+ TGA RDM+ HL
Sbjct: 187 KEAAQNILAFRFANGLFEPIWNREFIDHVQIDVPETLGVDTRAAFYDATGAYRDMVVTHL 246
Query: 245 LQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKG 304
Q+L VAME P ++E +I EK KV ++++ + P V VRGQY G
Sbjct: 247 FQVLAFVAMEPPTALEPDAISEEKNKVFRSMRPLDPAEV----VRGQYS----------G 292
Query: 305 YLEEIPLGI---SDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361
Y +E G+ S TETFVA+K IDN RW+G+PFYLRTGK +A+ I IA + P +
Sbjct: 293 YRDEP--GVAPDSTTETFVALKVWIDNWRWAGVPFYLRTGKRMAEGQRIISIAFREPPYS 350
Query: 362 IFDHQMSKIET-NKLILRLQNNGEIEQFITTK--------DHSTSNMKLKTTALRICCCS 412
+F + + L L +N ++ K D + LK T +
Sbjct: 351 MFPAGSVGAQGPDHLTFDLADNSKVSLSFYGKRPGPGMRLDKLSLQFSLKDTGPKG---- 406
Query: 413 KRIKRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTW 472
+ YERL++D + + TLF D +E W+ S +L+ V YA G+W
Sbjct: 407 ----DVLEAYERLILDALRGDHTLFTTADGIESLWEVSQPLLED----PPPVKPYAPGSW 458
Query: 473 GPDQSDVLLQKDG------RRWHNNT 492
GP+ L D R W
Sbjct: 459 GPNAIHQLAAPDAWRLPFEREWRELG 484
>gnl|CDD|185548 PTZ00309, PTZ00309, glucose-6-phosphate 1-dehydrogenase;
Provisional.
Length = 542
Score = 334 bits (858), Expect = 3e-92
Identities = 173/496 (34%), Positives = 265/496 (53%), Gaps = 29/496 (5%)
Query: 5 TPNIHNSD---FIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYR 61
+ S I+ G +GDLAK+K FPAL+ Y I+G R KM
Sbjct: 46 VKDEDKSRALTIIVLGASGDLAKKKTFPALFQLYCEGLLPS-EVNIVGYARSKM--SDVE 102
Query: 62 SFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD--------IDK 113
+ + L R+ K + +++FL I YI+ +++ ++ L KL++ +K
Sbjct: 103 RWKKETLARFFKRLDDRECHLEQFLKHISYISGSYDEDEDFKRLNKLIERMEEAFQGPEK 162
Query: 114 TRIRVFYLAMSSAFFGKISQRIHANNLVTEH--TRVVLEKPIGSNLSSAQEIHAITRKIF 171
R+FYLA+ + F + + IH ++++ RV++EKP G +L S++E+ +F
Sbjct: 163 GGNRLFYLALPPSVFASVCEGIH-RGCMSKNGWVRVIVEKPFGRDLESSEELSNQLEPLF 221
Query: 172 KESQIFRIDHYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYN 231
ESQ++RIDHYLGKE VQ L+V RFAN +E LWN I VQIT E IG E R Y++
Sbjct: 222 DESQLYRIDHYLGKEMVQNLIVLRFANRVFEPLWNRNNIACVQITFKEDIGTEGRGGYFD 281
Query: 232 NTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQ 291
+ G +RD++QNHLLQ+L L+AME P S+ A+ I++EK+KVL+ ++ I E V GQ
Sbjct: 282 SYGIIRDVMQNHLLQILALLAMEKPVSLSAEDIRDEKVKVLKCIEPIKMEE----CVLGQ 337
Query: 292 YQSGIINGIPVKGYLEE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHIS 349
Y + + GYLE+ +P S T TF A +I+N RW G+PF L GK L +
Sbjct: 338 YTAS--ADGSIPGYLEDEGVPKD-STTPTFAAAVLHINNDRWEGVPFILEAGKALEERYV 394
Query: 350 EIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRIC 409
EI I K ++ N+L++R Q + + IT K SN L T L +
Sbjct: 395 EIRIQFKGVDEFRPSGDDTQ--RNELVIRAQPSEAMYLKITAKVPGLSN-DLHQTELDLT 451
Query: 410 CCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAA 469
++ R PD YERL++D + + T F+ DE++ W+ +L K + Y
Sbjct: 452 YKTRYNVRLPDAYERLILDALLGDSTNFVRKDELDVAWRIFTPLLHQIDRGEVKPEPYPF 511
Query: 470 GTWGPDQSDVLLQKDG 485
G+ GP ++D L++K+G
Sbjct: 512 GSRGPKEADELIKKNG 527
>gnl|CDD|178154 PLN02539, PLN02539, glucose-6-phosphate 1-dehydrogenase.
Length = 491
Score = 310 bits (796), Expect = 5e-85
Identities = 177/487 (36%), Positives = 260/487 (53%), Gaps = 38/487 (7%)
Query: 14 IIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLK 73
I+ G +GDLAK+K FPAL+N Y I G R K+T E R ++ YLK
Sbjct: 21 IVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSKITDEELRD----RIRGYLK 76
Query: 74 -DGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLL--------DIDKTRIRVFYLAMS 124
+ V KFL LI Y++ + G+ L K + + + R+FYLA+
Sbjct: 77 DEKNAPAEAVSKFLQLIKYVSGAYDSEEGFRRLDKEISEHEISKNSAEGSSRRLFYLALP 136
Query: 125 SAFFGKISQRIHAN--NLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHY 182
+ + + + I N TR+V+EKP G +L SA+E+ + ++F ESQ++RIDHY
Sbjct: 137 PSVYPPVCKMIKKCCMNKSGLWTRIVVEKPFGKDLESAEELSSQIGELFDESQLYRIDHY 196
Query: 183 LGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQN 242
LGKE VQ L+V RFAN F+ LWN I +VQI E G E R Y++ G +RD+IQN
Sbjct: 197 LGKELVQNLLVLRFANRFFLPLWNRDNIANVQIVFREDFGTEGRGGYFDEYGIIRDIIQN 256
Query: 243 HLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPV 302
HLLQ+LCLVAME P S++ + I++EK+KVLQ+++ I E V V GQY+
Sbjct: 257 HLLQVLCLVAMEKPVSLKPEHIRDEKVKVLQSVEPIKDEEV----VLGQYE--------- 303
Query: 303 KGYLEE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPC 360
GY ++ +P S+T TF ++ I+N RW G+PF L+ GK L +EI + K P
Sbjct: 304 -GYRDDPTVPDD-SNTPTFASVVLRINNERWEGVPFILKAGKALDSRKAEIRVQFKDVPG 361
Query: 361 TIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRT-- 418
IF Q K N+ ++RLQ + + +T K M + L + +R +
Sbjct: 362 DIFKCQ--KQGRNEFVIRLQPSEAMYMKLTVKQPGL-EMSTVQSELDL-SYGQRYQDVVI 417
Query: 419 PDGYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSD 478
P+ YERL++D I +Q F+ DE++ W+ +L K Y G+ GP ++D
Sbjct: 418 PEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDAGKVKPIPYKQGSRGPAEAD 477
Query: 479 VLLQKDG 485
LL+K G
Sbjct: 478 ELLEKAG 484
>gnl|CDD|177967 PLN02333, PLN02333, glucose-6-phosphate 1-dehydrogenase.
Length = 604
Score = 275 bits (705), Expect = 2e-74
Identities = 172/486 (35%), Positives = 264/486 (54%), Gaps = 22/486 (4%)
Query: 15 IFGGTGDLAKRKLFPALYNNYTNREENQISSR--IIGICRIKMTVESYRSFVDKELQRYL 72
+ G +GDLAK+K+FPAL+ Y E + I G R KMT R+ V K L +
Sbjct: 122 VVGASGDLAKKKIFPALFALYY---EGCLPEHFTIFGYARSKMTDAELRNMVSKTLTCRI 178
Query: 73 KDGEYNPLKVQKFLSLIFYIN--LDVEKNYGWELLGKLLDIDKTRI--RVFYLAMS-SAF 127
E K+++FL FY + D ++++ EL KL + + R+ R+FYL++ + F
Sbjct: 179 DKRENCGEKMEEFLKRCFYHSGQYDSQEHFA-ELDKKLKEHEGGRVSNRLFYLSIPPNIF 237
Query: 128 FGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEA 187
+ + + V TRV++EKP G + S+ + ++ +E QIFRIDHYLGKE
Sbjct: 238 VDAVKCASSSASSVNGWTRVIVEKPFGRDSESSAALTKSLKQYLEEDQIFRIDHYLGKEL 297
Query: 188 VQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQL 247
V+ L V RF+N +E LW+ +YI +VQ +E G E R Y++N G +RD++QNHLLQ+
Sbjct: 298 VENLSVLRFSNLIFEPLWSRQYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQI 357
Query: 248 LCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLE 307
L L AME P S++A+ I+NEK+KVL++++ I E+V V GQY+S G+ Y +
Sbjct: 358 LALFAMETPVSLDAEDIRNEKVKVLRSMRPIQLEDV----VIGQYKSHTKGGVTYPAYTD 413
Query: 308 E--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDH 365
+ +P G S T TF A IDN RW G+PF ++ GK L +EI + + P +++
Sbjct: 414 DKTVPKG-SLTPTFAAAALFIDNARWDGVPFLMKAGKALHTKSAEIRVQFRHVPGNLYNR 472
Query: 366 QMSK---IETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDGY 422
TN+L++R+Q + I I K M+L + L + ++ K PD Y
Sbjct: 473 NFGTDLDQATNELVIRVQPDEAIYLKINNKVPGLG-MRLDRSNLNLLYAARYSKEIPDAY 531
Query: 423 ERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQ 482
ERLL+D I + LF+ DE++ W +LK + +YY G+ GP + L
Sbjct: 532 ERLLLDAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIIPEYYPYGSRGPVGAHYLAA 591
Query: 483 KDGRRW 488
+ RW
Sbjct: 592 RYKVRW 597
>gnl|CDD|178246 PLN02640, PLN02640, glucose-6-phosphate 1-dehydrogenase.
Length = 573
Score = 259 bits (664), Expect = 8e-70
Identities = 165/487 (33%), Positives = 256/487 (52%), Gaps = 24/487 (4%)
Query: 15 IFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQRYLKD 74
+ G +GDLAK+K+FPAL+ + + + + G R K+T E R + L +
Sbjct: 93 VVGASGDLAKKKIFPALFALFYEDWLPENFT-VFGYARTKLTDEELRDMISSTLTCRIDQ 151
Query: 75 GEYNPLKVQKFLSLIFYI--NLDVEKNYGWELLGKLLDIDKTRI--RVFYLAMSSAFFGK 130
E K+ +FL FY D E+++ EL KL + + ++ R+FYL++ F
Sbjct: 152 RENCGDKMDQFLKRCFYHSGQYDSEEDFA-ELNKKLKEKEAGKLSNRLFYLSIPPNIFVD 210
Query: 131 I----SQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKE 186
+ S R + N TRV++EKP G + S+ E+ ++ E QIFRIDHYLGKE
Sbjct: 211 VVRCASLRASSEN---GWTRVIVEKPFGRDSESSGELTRCLKQYLTEEQIFRIDHYLGKE 267
Query: 187 AVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQ 246
V+ L V RF+N +E LW+ YI +VQ+ +E G E R Y++N G +RD++QNHLLQ
Sbjct: 268 LVENLSVLRFSNLVFEPLWSRNYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQ 327
Query: 247 LLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYL 306
+L L AME P S++A+ I+NEK+KVL++++ + E+V + GQY+ G Y
Sbjct: 328 ILALFAMETPVSLDAEDIRNEKVKVLRSMKPLQLEDV----IVGQYKGHSKGGKSYPAYT 383
Query: 307 EE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFD 364
++ +P S T TF A I+N RW G+PF ++ GK L +EI + + P ++
Sbjct: 384 DDPTVPKH-SLTPTFAAAALFINNARWDGVPFLMKAGKALHTRRAEIRVQFRHVPGNLYK 442
Query: 365 HQMSK---IETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDG 421
TN+L+LR+Q + I I K M+L + L + ++ + PD
Sbjct: 443 RNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLG-MRLDRSDLNLLYRARYPREIPDA 501
Query: 422 YERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLL 481
YERLL+D I + LF+ DE++ W +LK + + Y G+ GP + L
Sbjct: 502 YERLLLDAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIIPELYPYGSRGPVGAHYLA 561
Query: 482 QKDGRRW 488
K RW
Sbjct: 562 AKYNVRW 568
>gnl|CDD|140243 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 31.5 bits (72), Expect = 0.46
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 30/88 (34%)
Query: 399 MKLKTTAL---RICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEV------------ 443
+ AL + K + + DG ER M++ H N+T ++ Y E+
Sbjct: 81 ERGDRRALAYRPVERVEKEVVKDADGKERT-MEVTHFNETRYITYAELWERIVNFGRGLA 139
Query: 444 -------------EET-WKWSDSILKSW 457
EET W+W SI W
Sbjct: 140 ELGLTKGSNVAIYEETRWEWLASIYGIW 167
>gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 246
Score = 29.4 bits (67), Expect = 2.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 117 RVFYLAMSSAFFGKISQRIHANNL 140
R Y AMS A Q + ANNL
Sbjct: 3 RALYTAMSGASQNLNQQAVVANNL 26
>gnl|CDD|177284 PHA00452, PHA00452, T3/T7-like RNA polymerase.
Length = 807
Score = 28.1 bits (63), Expect = 5.2
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 28 FPALYNNYTNREENQISSRIIGICRIKMTVE 58
FP ++ Y EE ++ R++G+ R+++ V
Sbjct: 665 FP-VWQEYRKPEEKRVRLRLMGVARVQLYVN 694
>gnl|CDD|163126 TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent
dehydrogenase, glucose/quinate/shikimate family. This
protein family has a phylogenetic distribution very
similar to that coenzyme PQQ biosynthesis enzymes, as
shown by partial phylogenetic profiling. Members of this
family have several predicted transmembrane helices in
the N-terminal region, and include the quinoprotein
glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli
and the quinate/shikimate dehydrogenase of Acinetobacter
sp. ADP1 (EC 1.1.99.25). Sequences closely related
except for the absense of the N-terminal hydrophobic
region, scoring in the gray zone between the trusted and
noise cutoffs, include PQQ-dependent glycerol (EC
1.1.99.22) and and other polyol (sugar alcohol)
dehydrogenases.
Length = 764
Score = 28.0 bits (63), Expect = 5.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 274 ALQMITPENVQKLTVRGQYQSG 295
L I P+NV L V Y +G
Sbjct: 152 PLDQINPDNVGNLKVAWTYHTG 173
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,069,251
Number of extensions: 524180
Number of successful extensions: 942
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 15
Length of query: 492
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,898,497
Effective search space: 1539906315
Effective search space used: 1539906315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)