RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate
1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A* (A:179-489)
Length = 311
Score = 340 bits (874), Expect = 2e-94
Identities = 107/311 (34%), Positives = 165/311 (53%), Gaps = 13/311 (4%)
Query: 185 KEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHL 244
KE VQ LMV RFAN + +WN I V +T E G E R Y++ G +RD++QNHL
Sbjct: 1 KEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHL 60
Query: 245 LQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSG-IINGIPVK 303
LQ+LCLVAME P S + +++EK+KVL+ + + NV V GQY G K
Sbjct: 61 LQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNV----VLGQYVGNPDGEGEATK 116
Query: 304 GYLEE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361
GYL++ +P G S T TF A+ ++N RW G+PF LR GK L + +E+ +
Sbjct: 117 GYLDDPTVPRG-STTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGD 175
Query: 362 IFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRIC-CCSKRIKRTPD 420
IF Q + N+L++R+Q N + + TK + + L + + + PD
Sbjct: 176 IFHQQC---KRNELVIRVQPNEAVYTKMMTKK-PGMFFNPEESELDLTYGNRYKNVKLPD 231
Query: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480
YERL++D+ +Q F+ DE+ E W+ +L ++ K Y G+ GP ++D L
Sbjct: 232 AYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADEL 291
Query: 481 LQKDGRRWHNN 491
+++ G ++
Sbjct: 292 MKRVGFQYEGT 302
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase,
NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) -
NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:205-485)
Length = 281
Score = 311 bits (798), Expect = 1e-85
Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 8/284 (2%)
Query: 209 YIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEK 268
YI +VQ+T +E +GVE+R YY+ GAL DMIQNH +Q++ +AME P S K I+ K
Sbjct: 2 YIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDKDIRAAK 61
Query: 269 IKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEE--IPLGISDTETFVAIKANI 326
AL++ V K VR QY +G + K YLEE +P S TF+A +
Sbjct: 62 NAAFNALKIYDEAEVNKYFVRAQYGAG--DSADFKPYLEELDVPAD-SKNNTFIAGELQF 118
Query: 327 DNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIE 386
D PRW G+PFY+R+GK LA + + I K Q + + L + + G IE
Sbjct: 119 DLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGSEQ--EAQEAVLSIIIDPKGAIE 176
Query: 387 QFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEET 446
+ K + +T L + K TP+ YER++ D ++ + + F ++ V
Sbjct: 177 LKLNAKSVEDA-FNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGDGSNFADWNGVSIA 235
Query: 447 WKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKDGRRWHN 490
WK+ D+I + ++ Y +G+ GP+ SD LL +G W
Sbjct: 236 WKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDAWVF 279
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase,
NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) -
NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:1-182)
Length = 182
Score = 169 bits (429), Expect = 8e-43
Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQ 69
+ FGGTGDLAKRKL+P+++N Y + I+G R + + ++ V ++
Sbjct: 5 KTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQK-HFAIVGTARQALNDDEFKQLVRDCIK 63
Query: 70 RYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-----IDKTRIRVFYLAMS 124
+ D + + F+ Y DV + +L + ++ D R+FY++++
Sbjct: 64 DFTDDQA----QAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVA 119
Query: 125 SAFFGKISQRIHANNLVTEH--TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHY 182
FFG I++ + + L+ + R+++EKP G++ +A E+ F ++Q+FRIDHY
Sbjct: 120 PRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHY 179
Query: 183 LGK 185
LGK
Sbjct: 180 LGK 182
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A* (A:1-178)
Length = 178
Score = 165 bits (419), Expect = 1e-41
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISS--RIIGICRIKMTVESYRSFVDKE 67
FII G +GDLAK+K++P ++ + + + I+G R ++TV R +
Sbjct: 5 THIFIIMGASGDLAKKKIYPTIWWLF---RDGLLPENTFIVGYARSRLTVADIRKQSEP- 60
Query: 68 LQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD---IDKTRIRVFYLAMS 124
+ K LK++ F + Y+ + ++ L ++ + R+FYLA+
Sbjct: 61 ---FFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALP 117
Query: 125 SAFFGKISQRIHANNLVT-EHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYL 183
+ +++ IH + + R+++EKP G +L S+ + +F+E QI+RIDHYL
Sbjct: 118 PTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYL 177
Query: 184 G 184
G
Sbjct: 178 G 178
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp,
human tyrosine phosphatase catalytic domain, LC-PTP,
PTPN7, hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A
2qdc_A 2hvl_A 2qdp_A 2qdm_A 3d44_A* 3d42_A* 2a3k_A
(A:77-243)
Length = 167
Score = 30.8 bits (68), Expect = 0.42
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 143 EHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYE 202
+RV L + I+A + + + I A QG M ++ F+E
Sbjct: 5 PQSRVCLGRAQSQEDG--DYINANYIRGYDGKEKVYI-------ATQGPMPNTVSD-FWE 54
Query: 203 SLWNNKYIDHVQITTAETIGVEDRVDYYNNT 233
+W + V +T + +
Sbjct: 55 MVWQEEVSLIVMLTQLREGKEKCVHYWPTEE 85
>1dfc_A Fascin; beta-trefoil fold for all four domains, structural
genomics, PSI, protein structure initiative; 2.90A {Homo
sapiens} (A:1-139)
Length = 139
Score = 28.4 bits (63), Expect = 2.0
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 312 GISDTETFVAIKANIDNPRWSGIPFYLRT--GKYLAKHISEIVIALKPAPCTIFDHQMSK 369
+ + + + + LR+ G+YLA V + P +
Sbjct: 39 SLKKKQIWTLEQPPDE---AGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVA 95
Query: 370 IETNKLILRLQNNG 383
+ + L+ + +
Sbjct: 96 HDDGRWSLQSEAHR 109
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific
restriction, mutation, replication, hydrolase; 2.10A
{Escherichia coli} (A:181-283)
Length = 103
Score = 28.3 bits (63), Expect = 2.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 305 YLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIA 354
L+ I G + F+A+ ++ N R S R GK L H+ + I
Sbjct: 57 VLDIIRKGFGSVDEFIALANSVSNRRKS------RAGKSLELHLEHLFIE 100
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase
holoenzyme, streptolydigin, antibiotic, transcription
regulation; HET: STD; 2.40A {Thermus thermophilus}
(C:14-143,C:324-461)
Length = 268
Score = 27.7 bits (61), Expect = 3.6
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVE---KNYGWELLGKLL 109
++ VESYR + ++ ++ ++ + + L
Sbjct: 6 TEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPF 65
Query: 110 DIDKTRIR-VFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITR 168
D+ R + + Y + + ++ L+ E + P+ + S I+ R
Sbjct: 66 PQDECREKDLTY---QAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFI-INGADR 121
Query: 169 KIFKESQIFRIDHYLGKE 186
I + IDH +
Sbjct: 122 VIVSQIHRSDIDHLGNRR 139
>1vdh_A Muconolactone isomerase-like protein; beta barrel,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Thermus
thermophilus} (A:)
Length = 249
Score = 26.7 bits (59), Expect = 6.0
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 57 VESYRSFVDKELQRYLKDGEYNPLKVQKFLS--------LIFY-INLDVEKNYGWELLGK 107
S+ S V EL K + V+ L+ + FY +N + W +L
Sbjct: 105 SYSFYSVV--ELGSQEKPLDPESPYVKPRLTPRVPKSGYVCFYPMNKRRQGQDNWYMLP- 161
Query: 108 LLDIDKTRIRVFY--LAMSSAFFGKISQRIHA 137
K R + + G++ Q I
Sbjct: 162 ----AKERASLMKAHGETGRKYQGEVMQVISG 189
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.14A {Thermotoga
maritima} (A:1-129)
Length = 129
Score = 26.6 bits (58), Expect = 7.3
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 136 HANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRK 169
+ +EKPI + ++I ++ +K
Sbjct: 83 ILLEALERKIHAFVEKPIATTFEDLEKIRSVYQK 116
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta
barrel alpha beta roll, fusion protein; 1.90A
{Cricetulus griseus} (A:93-211)
Length = 119
Score = 26.7 bits (59), Expect = 7.9
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 103 ELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNL 157
KL + I ++ ++ LV +++V EK S+L
Sbjct: 51 SFNDKLFGLLVKDIEAXDPSILKGEPASGKRQKIEVGLVVGNSQVAFEKAENSSL 105
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor
type, R; PTP-SL, PTPBR7, ERK2-MAP kinase regulation,
hydrolase; 1.81A {Mus musculus} (A:66-232)
Length = 167
Score = 26.2 bits (56), Expect = 8.6
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 143 EHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANT--- 199
+RV L ++ S I+A + + + I NT
Sbjct: 4 PLSRVCLRPKNITDSLSTY-INANYIRGYSGKEKAFIA-----------TQGPMINTVND 51
Query: 200 FYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHL 244
F++ +W V IT + + + + G +
Sbjct: 52 FWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVT 96
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,839,897
Number of extensions: 175888
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 22
Length of query: 492
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 400
Effective length of database: 1,845,989
Effective search space: 738395600
Effective search space used: 738395600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)