RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (492 letters) >2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:179-489) Length = 311 Score = 340 bits (874), Expect = 2e-94 Identities = 107/311 (34%), Positives = 165/311 (53%), Gaps = 13/311 (4%) Query: 185 KEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHL 244 KE VQ LMV RFAN + +WN I V +T E G E R Y++ G +RD++QNHL Sbjct: 1 KEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHL 60 Query: 245 LQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSG-IINGIPVK 303 LQ+LCLVAME P S + +++EK+KVL+ + + NV V GQY G K Sbjct: 61 LQMLCLVAMEKPASTNSDDVRDEKVKVLKCISEVQANNV----VLGQYVGNPDGEGEATK 116 Query: 304 GYLEE--IPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCT 361 GYL++ +P G S T TF A+ ++N RW G+PF LR GK L + +E+ + Sbjct: 117 GYLDDPTVPRG-STTATFAAVVLYVENERWDGVPFILRCGKALNERKAEVRLQFHDVAGD 175 Query: 362 IFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRIC-CCSKRIKRTPD 420 IF Q + N+L++R+Q N + + TK + + L + + + PD Sbjct: 176 IFHQQC---KRNELVIRVQPNEAVYTKMMTKK-PGMFFNPEESELDLTYGNRYKNVKLPD 231 Query: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480 YERL++D+ +Q F+ DE+ E W+ +L ++ K Y G+ GP ++D L Sbjct: 232 AYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADEL 291 Query: 481 LQKDGRRWHNN 491 +++ G ++ Sbjct: 292 MKRVGFQYEGT 302 >1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:205-485) Length = 281 Score = 311 bits (798), Expect = 1e-85 Identities = 95/284 (33%), Positives = 144/284 (50%), Gaps = 8/284 (2%) Query: 209 YIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHLLQLLCLVAMEMPPSVEAKSIKNEK 268 YI +VQ+T +E +GVE+R YY+ GAL DMIQNH +Q++ +AME P S K I+ K Sbjct: 2 YIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVGWLAMEKPESFTDKDIRAAK 61 Query: 269 IKVLQALQMITPENVQKLTVRGQYQSGIINGIPVKGYLEE--IPLGISDTETFVAIKANI 326 AL++ V K VR QY +G + K YLEE +P S TF+A + Sbjct: 62 NAAFNALKIYDEAEVNKYFVRAQYGAG--DSADFKPYLEELDVPAD-SKNNTFIAGELQF 118 Query: 327 DNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPCTIFDHQMSKIETNKLILRLQNNGEIE 386 D PRW G+PFY+R+GK LA + + I K Q + + L + + G IE Sbjct: 119 DLPRWEGVPFYVRSGKRLAAKQTRVDIVFKAGTFNFGSEQ--EAQEAVLSIIIDPKGAIE 176 Query: 387 QFITTKDHSTSNMKLKTTALRICCCSKRIKRTPDGYERLLMDIIHANQTLFMGYDEVEET 446 + K + +T L + K TP+ YER++ D ++ + + F ++ V Sbjct: 177 LKLNAKSVEDA-FNTRTIDLGWTVSDEDKKNTPEPYERMIHDTMNGDGSNFADWNGVSIA 235 Query: 447 WKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVLLQKDGRRWHN 490 WK+ D+I + ++ Y +G+ GP+ SD LL +G W Sbjct: 236 WKFVDAISAVYTADKAPLETYKSGSMGPEASDKLLAANGDAWVF 279 >1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD, glucose metabolism, oxidoreductase (CHOH(D) - NAD(P)); 2.00A {Leuconostoc mesenteroides} (A:1-182) Length = 182 Score = 169 bits (429), Expect = 8e-43 Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%) Query: 10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESYRSFVDKELQ 69 + FGGTGDLAKRKL+P+++N Y + I+G R + + ++ V ++ Sbjct: 5 KTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQK-HFAIVGTARQALNDDEFKQLVRDCIK 63 Query: 70 RYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD-----IDKTRIRVFYLAMS 124 + D + + F+ Y DV + +L + ++ D R+FY++++ Sbjct: 64 DFTDDQA----QAEAFIEHFSYRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVA 119 Query: 125 SAFFGKISQRIHANNLVTEH--TRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHY 182 FFG I++ + + L+ + R+++EKP G++ +A E+ F ++Q+FRIDHY Sbjct: 120 PRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDHY 179 Query: 183 LGK 185 LGK Sbjct: 180 LGK 182 >2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase, oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism, glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB: 2bhl_A* 1qki_A* (A:1-178) Length = 178 Score = 165 bits (419), Expect = 1e-41 Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 13/181 (7%) Query: 10 NSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISS--RIIGICRIKMTVESYRSFVDKE 67 FII G +GDLAK+K++P ++ + + + I+G R ++TV R + Sbjct: 5 THIFIIMGASGDLAKKKIYPTIWWLF---RDGLLPENTFIVGYARSRLTVADIRKQSEP- 60 Query: 68 LQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLD---IDKTRIRVFYLAMS 124 + K LK++ F + Y+ + ++ L ++ + R+FYLA+ Sbjct: 61 ---FFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLALP 117 Query: 125 SAFFGKISQRIHANNLVT-EHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYL 183 + +++ IH + + R+++EKP G +L S+ + +F+E QI+RIDHYL Sbjct: 118 PTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHYL 177 Query: 184 G 184 G Sbjct: 178 G 178 >1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human tyrosine phosphatase catalytic domain, LC-PTP, PTPN7, hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A 2hvl_A 2qdp_A 2qdm_A 3d44_A* 3d42_A* 2a3k_A (A:77-243) Length = 167 Score = 30.8 bits (68), Expect = 0.42 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 143 EHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANTFYE 202 +RV L + I+A + + + I A QG M ++ F+E Sbjct: 5 PQSRVCLGRAQSQEDG--DYINANYIRGYDGKEKVYI-------ATQGPMPNTVSD-FWE 54 Query: 203 SLWNNKYIDHVQITTAETIGVEDRVDYYNNT 233 +W + V +T + + Sbjct: 55 MVWQEEVSLIVMLTQLREGKEKCVHYWPTEE 85 >1dfc_A Fascin; beta-trefoil fold for all four domains, structural genomics, PSI, protein structure initiative; 2.90A {Homo sapiens} (A:1-139) Length = 139 Score = 28.4 bits (63), Expect = 2.0 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 5/74 (6%) Query: 312 GISDTETFVAIKANIDNPRWSGIPFYLRT--GKYLAKHISEIVIALKPAPCTIFDHQMSK 369 + + + + + LR+ G+YLA V + P + Sbjct: 39 SLKKKQIWTLEQPPDE---AGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVA 95 Query: 370 IETNKLILRLQNNG 383 + + L+ + + Sbjct: 96 HDDGRWSLQSEAHR 109 >1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} (A:181-283) Length = 103 Score = 28.3 bits (63), Expect = 2.0 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 305 YLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIA 354 L+ I G + F+A+ ++ N R S R GK L H+ + I Sbjct: 57 VLDIIRKGFGSVDEFIALANSVSNRRKS------RAGKSLELHLEHLFIE 100 >2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (C:14-143,C:324-461) Length = 268 Score = 27.7 bits (61), Expect = 3.6 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 8/138 (5%) Query: 53 IKMTVESYRSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVE---KNYGWELLGKLL 109 ++ VESYR + ++ ++ ++ + + L Sbjct: 6 TEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPF 65 Query: 110 DIDKTRIR-VFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITR 168 D+ R + + Y + + ++ L+ E + P+ + S I+ R Sbjct: 66 PQDECREKDLTY---QAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFI-INGADR 121 Query: 169 KIFKESQIFRIDHYLGKE 186 I + IDH + Sbjct: 122 VIVSQIHRSDIDHLGNRR 139 >1vdh_A Muconolactone isomerase-like protein; beta barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} (A:) Length = 249 Score = 26.7 bits (59), Expect = 6.0 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 18/92 (19%) Query: 57 VESYRSFVDKELQRYLKDGEYNPLKVQKFLS--------LIFY-INLDVEKNYGWELLGK 107 S+ S V EL K + V+ L+ + FY +N + W +L Sbjct: 105 SYSFYSVV--ELGSQEKPLDPESPYVKPRLTPRVPKSGYVCFYPMNKRRQGQDNWYMLP- 161 Query: 108 LLDIDKTRIRVFY--LAMSSAFFGKISQRIHA 137 K R + + G++ Q I Sbjct: 162 ----AKERASLMKAHGETGRKYQGEVMQVISG 189 >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} (A:1-129) Length = 129 Score = 26.6 bits (58), Expect = 7.3 Identities = 6/34 (17%), Positives = 14/34 (41%) Query: 136 HANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRK 169 + +EKPI + ++I ++ +K Sbjct: 83 ILLEALERKIHAFVEKPIATTFEDLEKIRSVYQK 116 >1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} (A:93-211) Length = 119 Score = 26.7 bits (59), Expect = 7.9 Identities = 10/55 (18%), Positives = 19/55 (34%) Query: 103 ELLGKLLDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNL 157 KL + I ++ ++ LV +++V EK S+L Sbjct: 51 SFNDKLFGLLVKDIEAXDPSILKGEPASGKRQKIEVGLVVGNSQVAFEKAENSSL 105 >1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R; PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase; 1.81A {Mus musculus} (A:66-232) Length = 167 Score = 26.2 bits (56), Expect = 8.6 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 15/105 (14%) Query: 143 EHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANT--- 199 +RV L ++ S I+A + + + I NT Sbjct: 4 PLSRVCLRPKNITDSLSTY-INANYIRGYSGKEKAFIA-----------TQGPMINTVND 51 Query: 200 FYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMIQNHL 244 F++ +W V IT + + + + G + Sbjct: 52 FWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVT 96 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0531 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,839,897 Number of extensions: 175888 Number of successful extensions: 409 Number of sequences better than 10.0: 1 Number of HSP's gapped: 396 Number of HSP's successfully gapped: 22 Length of query: 492 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 400 Effective length of database: 1,845,989 Effective search space: 738395600 Effective search space used: 738395600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.8 bits)