BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780504|ref|YP_003064917.1| glucose-6-phosphate
1-dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
         (492 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 492

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/492 (100%), Positives = 492/492 (100%)

Query: 1   MQNHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESY 60
           MQNHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESY
Sbjct: 1   MQNHTPNIHNSDFIIFGGTGDLAKRKLFPALYNNYTNREENQISSRIIGICRIKMTVESY 60

Query: 61  RSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFY 120
           RSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFY
Sbjct: 61  RSFVDKELQRYLKDGEYNPLKVQKFLSLIFYINLDVEKNYGWELLGKLLDIDKTRIRVFY 120

Query: 121 LAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRID 180
           LAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRID
Sbjct: 121 LAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRID 180

Query: 181 HYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMI 240
           HYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMI
Sbjct: 181 HYLGKEAVQGLMVFRFANTFYESLWNNKYIDHVQITTAETIGVEDRVDYYNNTGALRDMI 240

Query: 241 QNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGI 300
           QNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGI
Sbjct: 241 QNHLLQLLCLVAMEMPPSVEAKSIKNEKIKVLQALQMITPENVQKLTVRGQYQSGIINGI 300

Query: 301 PVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPC 360
           PVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPC
Sbjct: 301 PVKGYLEEIPLGISDTETFVAIKANIDNPRWSGIPFYLRTGKYLAKHISEIVIALKPAPC 360

Query: 361 TIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPD 420
           TIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPD
Sbjct: 361 TIFDHQMSKIETNKLILRLQNNGEIEQFITTKDHSTSNMKLKTTALRICCCSKRIKRTPD 420

Query: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480
           GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL
Sbjct: 421 GYERLLMDIIHANQTLFMGYDEVEETWKWSDSILKSWQIINQKVDYYAAGTWGPDQSDVL 480

Query: 481 LQKDGRRWHNNT 492
           LQKDGRRWHNNT
Sbjct: 481 LQKDGRRWHNNT 492


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 27.7 bits (60), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 139 NLVTEHTRVVLEKPIGSNLSSAQEIHAITRKIFKESQIFRIDHYLGK 185
           NL++ H R  L   IG   ++    H +   ++K SQ F I++ +GK
Sbjct: 90  NLISNHIRDFLYVEIGQG-ATCTLYHQVVSHVYKLSQRFHINYKVGK 135


>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 311

 Score = 26.2 bits (56), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 7/33 (21%)

Query: 99  NYGWELLGKLLDIDKTRIRVFYLAMSSAFFGKI 131
           NYGW  LG + D       V  LA+ +A+ GK+
Sbjct: 15  NYGWGALGIVSD-------VALLAIPAAYLGKV 40


>gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 299

 Score = 25.8 bits (55), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 109 LDIDKTRIRVFYLAMSSAFFGKISQRIHANNLVTEHTRVVLEKPIGSNL----------- 157
           +  D  ++RVFY+   S  F   ++++H +          LE  +G  L           
Sbjct: 1   MSFDWDKLRVFYVVARSGSFTHAAEQLHLSQSSISRQISGLETEVGIKLFYRHARGLTLT 60

Query: 158 SSAQEIHAITRKIFKESQIFRIDHYLGKEAVQGLMVFRFANT 199
               ++H +T +++ + +  +I+  L + +V+     R A T
Sbjct: 61  EQGSKLHRVTSEVYHKLETTQIE--LQESSVKPSGKLRIATT 100


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 23.5 bits (49), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 13  FIIFGGTGDLAKRKLFPAL-YNNYTNRE 39
           F ++G    +AK K+F AL YNN T+++
Sbjct: 317 FYLYGDKVMIAKLKIFLALHYNNLTHQD 344


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,927
Number of Sequences: 1233
Number of extensions: 13611
Number of successful extensions: 35
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 10
length of query: 492
length of database: 328,796
effective HSP length: 78
effective length of query: 414
effective length of database: 232,622
effective search space: 96305508
effective search space used: 96305508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)