HHsearch alignment for GI: 254780505 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.26 E-value=0.0037 Score=39.31 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=67.2
Q ss_pred ECCHHHHHHHHHH-HHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 4898999999999-99999999997289779998798-646999987876307953238998132100356732027889
Q gi|254780505|r 9 AENKKRLAQKLAK-KVAEQLSIGITNKGTASIALSGG-LTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFI 86 (234)
Q Consensus 9 ~~~~~~l~~~~a~-~i~~~i~~~i~~~~~~~i~lsGG-stp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~ 86 (234)
T Consensus 132 ~d~~~~L~el~~~g~~~~Fl~~Ai~~~--knIii~GGTgSGKTTf~kal~--------~~IP~~ER~iTIED~------- 194 (328)
T TIGR02788 132 SDKDEELLELLDAGDIKEFLRLAIASR--KNIIISGGTGSGKTTFLKALV--------KEIPKDERLITIEDT------- 194 (328)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHH--------HCCCCCCCEEEEEEE-------
T ss_conf 468999999986288879999998738--919999068971899999997--------327622527888520-------
Q ss_pred HHHHHCCCCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9976235677632144458878-989999999999963158776489944
Q gi|254780505|r 87 SKFFLQNKAQKASFIPLYYPQK-TIEEAIRIANEKICQLIHFPFDVVVLG 135 (234)
Q Consensus 87 ~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~lLG 135 (234)
T Consensus 195 ~E~~~~hh---pN~V~L~ysk~v~~g~~~vt~~~Ll~scLRMrPDRI~Lg 241 (328)
T TIGR02788 195 RELFLPHH---PNKVHLFYSKGVGQGSAKVTPKDLLESCLRMRPDRILLG 241 (328)
T ss_pred ECCCCCCC---CCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 11478889---864565534642344356898999999711774057674