Query gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 234
No_of_seqs 118 out of 1678
Neff 7.6
Searched_HMMs 39220
Date Sun May 29 23:15:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780505.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01198 pgl 6-phosphoglucono 100.0 0 0 400.8 19.7 225 8-232 1-245 (251)
2 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 0 0 383.3 22.2 214 13-233 1-218 (219)
3 COG0363 NagB 6-phosphogluconol 100.0 0 0 378.2 22.4 225 4-233 1-229 (238)
4 PRK00443 nagB glucosamine-6-ph 100.0 0 0 366.8 20.0 228 4-233 1-242 (264)
5 PTZ00285 glucosamine-6-phospha 100.0 0 0 359.9 22.0 226 4-231 1-240 (253)
6 PRK09762 galactosamine-6-phosp 100.0 0 0 355.6 20.3 223 4-232 1-232 (236)
7 KOG3147 consensus 100.0 0 0 339.0 21.1 214 4-222 9-231 (252)
8 cd01399 GlcN6P_deaminase GlcN6 100.0 0 0 339.4 18.6 213 13-231 1-225 (232)
9 PRK12358 putative 6-phosphoglu 100.0 0 0 331.7 19.8 217 4-231 1-230 (239)
10 TIGR00502 nagB glucosamine-6-p 100.0 0 0 330.2 13.4 227 4-232 1-242 (260)
11 PRK02122 glucosamine-6-phospha 100.0 0 0 322.1 20.0 224 6-231 38-275 (660)
12 pfam01182 Glucosamine_iso Gluc 100.0 0 0 326.2 16.5 211 19-231 2-226 (236)
13 cd00458 SugarP_isomerase Sugar 100.0 5.1E-35 1.3E-39 234.6 13.5 158 17-189 2-163 (169)
14 KOG3148 consensus 100.0 9.2E-32 2.3E-36 214.6 14.0 222 4-227 1-236 (273)
15 pfam04198 Sugar-bind Putative 98.3 3.7E-05 9.4E-10 51.6 13.8 192 12-211 31-239 (255)
16 COG2390 DeoR Transcriptional r 98.2 0.00012 3.1E-09 48.4 13.9 206 11-223 92-319 (321)
17 TIGR02788 VirB11 P-type DNA tr 96.3 0.0037 9.3E-08 39.3 3.0 107 9-135 132-241 (328)
18 PTZ00301 uridine kinase; Provi 85.8 2.8 7.1E-05 21.6 6.1 59 35-93 2-79 (210)
19 TIGR00884 guaA_Cterm GMP synth 85.2 2.7 6.8E-05 21.8 5.5 88 21-113 4-96 (319)
20 KOG2044 consensus 84.6 3.2 8.1E-05 21.3 6.0 101 1-104 111-230 (931)
21 TIGR00730 TIGR00730 conserved 84.5 3.2 8.2E-05 21.3 5.9 20 28-49 25-44 (205)
22 PRK07429 phosphoribulokinase; 83.2 3.6 9.2E-05 20.9 6.2 58 34-91 6-76 (331)
23 COG0572 Udk Uridine kinase [Nu 81.9 4.1 0.0001 20.6 5.3 58 36-94 8-81 (218)
24 PRK05480 uridine kinase; Provi 80.5 4.6 0.00012 20.3 6.0 43 34-76 4-47 (209)
25 pfam03641 Lysine_decarbox Poss 79.5 4.9 0.00013 20.1 5.7 45 31-75 49-96 (130)
26 TIGR02432 lysidine_TilS_N tRNA 78.5 5.3 0.00013 20.0 7.2 99 36-135 1-116 (204)
27 cd01992 PP-ATPase N-terminal d 78.2 5.4 0.00014 19.9 5.1 96 37-136 2-104 (185)
28 PRK11192 ATP-dependent RNA hel 77.1 5.8 0.00015 19.7 6.2 62 6-72 79-158 (417)
29 PRK04837 ATP-dependent RNA hel 76.5 6 0.00015 19.6 7.4 62 6-72 88-167 (423)
30 PRK00876 nadE NAD synthetase; 76.2 6.1 0.00016 19.6 4.8 54 19-73 15-71 (325)
31 COG1606 ATP-utilizing enzymes 74.8 6.6 0.00017 19.3 7.4 50 25-76 8-57 (269)
32 cd00553 NAD_synthase NAD+ synt 70.2 8.5 0.00022 18.7 7.1 61 11-74 2-62 (248)
33 PRK00919 GMP synthase subunit 70.0 8.6 0.00022 18.6 5.5 63 22-87 9-71 (306)
34 cd01575 PBP1_GntR Ligand-bindi 68.3 9.4 0.00024 18.4 8.8 11 49-59 69-79 (268)
35 cd00268 DEADc DEAD-box helicas 68.1 9.4 0.00024 18.4 6.9 25 47-71 127-151 (203)
36 PRK11634 ATP-dependent RNA hel 67.8 9.6 0.00024 18.4 6.7 62 6-71 78-157 (629)
37 pfam01171 ATP_bind_3 PP-loop f 67.3 9.8 0.00025 18.3 6.6 102 36-141 1-109 (182)
38 PRK09604 putative DNA-binding/ 66.7 10 0.00026 18.2 6.0 38 12-49 44-86 (335)
39 COG0037 MesJ tRNA(Ile)-lysidin 66.2 10 0.00026 18.2 10.6 111 25-139 8-131 (298)
40 pfam07005 DUF1537 Protein of u 65.9 10 0.00027 18.1 5.2 22 187-208 195-216 (224)
41 PRK01297 ATP-dependent RNA hel 65.0 11 0.00028 18.0 6.8 63 5-72 162-243 (472)
42 TIGR00235 udk uridine kinase; 63.5 12 0.0003 17.9 5.0 69 36-104 10-101 (220)
43 PRK10590 ATP-dependent RNA hel 61.6 13 0.00032 17.6 6.4 168 5-210 78-268 (457)
44 pfam00012 HSP70 Hsp70 protein. 61.4 13 0.00032 17.6 4.5 67 10-77 295-366 (598)
45 PRK08233 hypothetical protein; 60.7 13 0.00033 17.5 4.2 41 34-77 1-43 (182)
46 PRK13410 molecular chaperone D 60.6 13 0.00033 17.5 4.5 20 39-58 332-351 (719)
47 PRK13978 ribose-5-phosphate is 59.9 13 0.00034 17.5 4.4 42 10-57 2-43 (228)
48 PRK11776 ATP-dependent RNA hel 59.1 14 0.00035 17.4 7.3 63 6-72 76-156 (459)
49 TIGR02477 PFKA_PPi diphosphate 58.7 14 0.00036 17.3 5.2 16 58-74 338-353 (566)
50 PTZ00110 helicase; Provisional 58.2 14 0.00037 17.3 11.9 172 6-209 259-450 (602)
51 pfam00455 DeoR Bacterial regul 57.5 15 0.00038 17.2 4.7 31 34-68 16-46 (157)
52 cd02026 PRK Phosphoribulokinas 54.5 17 0.00042 16.9 5.4 35 39-73 2-37 (273)
53 TIGR01887 dipeptidaselike dipe 54.0 16 0.0004 17.0 3.3 41 44-91 118-161 (492)
54 PRK11678 putative chaperone; P 53.2 17 0.00044 16.8 5.9 15 126-140 218-232 (450)
55 PRK09177 xanthine-guanine phos 51.8 18 0.00047 16.6 5.2 48 1-54 3-52 (156)
56 cd02024 NRK1 Nicotinamide ribo 51.4 19 0.00047 16.6 3.7 39 38-78 1-40 (187)
57 TIGR01275 ACC_deam_rel pyridox 50.7 19 0.00048 16.5 4.0 38 111-148 163-201 (339)
58 cd02028 UMPK_like Uridine mono 49.2 20 0.00051 16.4 5.1 39 38-76 1-42 (179)
59 PRK07667 uridine kinase; Provi 49.1 20 0.00051 16.4 3.3 46 32-77 10-58 (190)
60 KOG0331 consensus 48.0 21 0.00054 16.3 5.8 79 6-91 169-265 (519)
61 PTZ00340 O-sialoglycoprotein e 47.6 21 0.00054 16.2 5.5 34 12-45 49-87 (348)
62 TIGR02471 sucr_syn_bact_C sucr 45.9 23 0.00058 16.1 4.5 46 17-64 16-61 (241)
63 COG5049 XRN1 5'-3' exonuclease 45.7 20 0.00051 16.4 2.7 16 129-144 220-236 (953)
64 TIGR00678 holB DNA polymerase 45.7 23 0.00058 16.0 3.1 22 187-208 170-191 (216)
65 TIGR02938 nifL_nitrog nitrogen 44.3 16 0.0004 17.1 2.0 23 40-62 51-76 (496)
66 TIGR01369 CPSaseII_lrg carbamo 44.1 24 0.00061 15.9 4.0 29 32-60 646-675 (1089)
67 PRK10660 tilS tRNA(Ile)-lysidi 43.8 24 0.00062 15.9 9.2 46 28-73 7-54 (433)
68 PRK06031 phosphoribosyltransfe 43.8 24 0.00062 15.9 5.0 115 15-137 68-190 (233)
69 COG0519 GuaA GMP synthase, PP- 43.5 25 0.00063 15.8 8.3 93 19-118 7-106 (315)
70 COG0513 SrmB Superfamily II DN 42.6 25 0.00065 15.8 7.3 105 5-122 102-227 (513)
71 PRK13980 NAD synthetase; Provi 42.0 26 0.00066 15.7 6.9 76 11-90 7-82 (264)
72 KOG3636 consensus 41.2 12 0.0003 17.9 0.9 26 47-72 308-333 (669)
73 PRK00290 dnaK molecular chaper 40.3 28 0.0007 15.5 4.0 19 39-57 332-350 (631)
74 PRK09605 O-sialoglycoprotein e 40.1 28 0.00071 15.5 5.6 32 16-47 227-258 (536)
75 cd06267 PBP1_LacI_sugar_bindin 40.0 28 0.00071 15.5 11.0 18 41-58 61-78 (264)
76 PRK00074 guaA GMP synthase; Re 39.7 28 0.00072 15.5 7.3 91 19-114 202-297 (513)
77 cd01398 RPI_A RPI_A: Ribose 5- 39.0 29 0.00074 15.4 3.8 23 36-58 16-38 (213)
78 PRK00768 nadE NAD synthetase; 38.6 29 0.00075 15.4 4.1 36 11-48 19-56 (274)
79 pfam06723 MreB_Mbl MreB/Mbl pr 38.2 30 0.00076 15.3 3.3 18 191-208 277-294 (327)
80 PTZ00153 lipoamide dehydrogena 37.9 12 0.0003 17.8 0.6 33 62-95 344-376 (673)
81 PRK13776 formimidoylglutamase; 37.5 31 0.00078 15.3 8.8 61 8-73 90-154 (311)
82 COG0171 NadE NAD synthase [Coe 36.6 32 0.0008 15.2 4.4 62 10-74 3-68 (268)
83 COG2236 Predicted phosphoribos 36.2 32 0.00082 15.1 3.6 48 1-53 1-49 (192)
84 COG1765 Predicted redox protei 36.1 32 0.00082 15.1 4.1 45 188-233 90-134 (137)
85 KOG2014 consensus 36.1 32 0.00082 15.1 4.9 68 13-84 4-76 (331)
86 COG4279 Uncharacterized conser 35.7 8.6 0.00022 18.6 -0.4 15 131-145 158-172 (266)
87 cd06296 PBP1_CatR_like Ligand- 35.7 33 0.00083 15.1 9.7 21 39-59 59-79 (270)
88 KOG3363 consensus 35.6 29 0.00074 15.4 2.3 20 124-143 107-126 (196)
89 TIGR02079 THD1 threonine dehyd 35.2 33 0.00085 15.0 2.9 115 20-143 51-186 (415)
90 cd06817 PLPDE_III_DSD Type III 34.9 34 0.00086 15.0 2.9 10 71-80 143-153 (389)
91 TIGR00904 mreB cell shape dete 33.3 23 0.00058 16.0 1.4 40 9-49 77-116 (337)
92 smart00732 YqgFc Likely ribonu 32.9 36 0.00092 14.8 5.3 38 36-74 54-95 (99)
93 PRK13930 rod shape-determining 32.8 36 0.00093 14.8 4.9 18 191-208 285-302 (336)
94 COG1121 ZnuC ABC-type Mn/Zn tr 31.7 26 0.00067 15.7 1.5 31 39-75 138-169 (254)
95 pfam02540 NAD_synthase NAD syn 29.2 42 0.0011 14.4 5.5 52 21-73 3-56 (243)
96 PRK13411 molecular chaperone D 29.2 42 0.0011 14.4 4.7 46 13-58 300-350 (655)
97 TIGR02581 cas_cyan_RAMP CRISPR 29.1 42 0.0011 14.4 2.5 52 43-94 47-101 (241)
98 CHL00094 dnaK heat shock prote 28.8 43 0.0011 14.4 5.3 19 39-57 332-350 (622)
99 pfam09793 AD Anticodon-binding 28.5 34 0.00087 15.0 1.7 35 40-74 27-65 (90)
100 PRK05439 pantothenate kinase; 28.4 43 0.0011 14.3 5.0 61 32-98 82-147 (312)
101 cd06279 PBP1_LacI_like_3 Ligan 27.4 45 0.0012 14.2 11.6 26 23-48 22-47 (283)
102 PRK07508 para-aminobenzoate sy 26.9 46 0.0012 14.2 2.2 57 22-80 115-178 (377)
103 cd01993 Alpha_ANH_like_II This 26.4 47 0.0012 14.1 8.7 39 36-74 1-42 (185)
104 TIGR02955 TMAO_TorT TMAO reduc 26.4 39 0.001 14.6 1.7 91 14-118 112-212 (304)
105 KOG3655 consensus 26.4 25 0.00065 15.8 0.7 77 61-143 77-157 (484)
106 KOG4493 consensus 26.3 47 0.0012 14.1 3.5 56 8-68 65-127 (219)
107 TIGR02463 MPGP_rel mannosyl-3- 26.2 47 0.0012 14.1 4.7 153 19-207 20-188 (224)
108 cd02023 UMPK Uridine monophosp 26.0 48 0.0012 14.1 4.2 38 39-76 2-40 (198)
109 PRK10530 phosphotransferase; P 25.9 48 0.0012 14.1 3.4 53 2-60 1-60 (272)
110 COG3969 Predicted phosphoadeno 25.7 48 0.0012 14.0 6.4 64 1-71 1-66 (407)
111 KOG1800 consensus 24.8 50 0.0013 13.9 10.5 98 37-150 21-130 (468)
112 PRK13928 rod shape-determining 24.7 50 0.0013 13.9 5.0 18 191-208 279-296 (325)
113 cd06295 PBP1_CelR Ligand bindi 24.6 51 0.0013 13.9 11.5 11 48-58 77-87 (275)
114 cd06285 PBP1_LacI_like_7 Ligan 24.2 52 0.0013 13.9 10.8 22 39-60 59-80 (265)
115 COG1856 Uncharacterized homolo 24.1 52 0.0013 13.9 4.1 41 31-71 51-100 (275)
116 pfam06908 DUF1273 Protein of u 23.7 53 0.0013 13.8 7.4 114 3-123 11-128 (177)
117 TIGR01469 cobA_cysG_Cterm urop 23.5 53 0.0014 13.8 3.6 61 162-222 136-200 (242)
118 TIGR01127 ilvA_1Cterm threonin 23.0 55 0.0014 13.7 5.1 32 23-54 262-295 (381)
119 COG0147 TrpE Anthranilate/para 22.6 56 0.0014 13.7 2.6 177 23-211 199-387 (462)
120 PTZ00009 heat shock 70 kDa pro 22.1 57 0.0014 13.6 3.8 49 11-59 303-356 (657)
121 PRK13851 type IV secretion sys 21.5 59 0.0015 13.5 5.2 109 20-150 148-273 (343)
122 COG1453 Predicted oxidoreducta 21.4 59 0.0015 13.5 5.6 60 13-72 122-181 (391)
123 cd00885 cinA Competence-damage 21.4 59 0.0015 13.5 3.9 25 68-93 7-31 (170)
124 TIGR02667 moaB_proteo molybden 21.3 59 0.0015 13.5 3.1 21 188-208 124-146 (163)
125 TIGR02584 cas_NE0113 CRISPR-as 21.2 59 0.0015 13.5 6.8 55 16-72 114-173 (224)
126 TIGR02070 mono_pep_trsgly mono 21.1 60 0.0015 13.5 2.5 66 25-102 88-154 (228)
127 PRK10696 C32 tRNA thiolase; Pr 21.1 60 0.0015 13.5 4.4 106 30-142 35-155 (311)
128 TIGR02740 TraF-like TraF-like 21.0 60 0.0015 13.5 4.3 103 87-195 185-298 (306)
129 PRK00702 ribose-5-phosphate is 21.0 60 0.0015 13.5 5.4 42 11-58 2-43 (222)
130 cd06288 PBP1_sucrose_transcrip 20.9 60 0.0015 13.5 10.5 17 31-47 26-42 (269)
131 KOG2249 consensus 20.6 54 0.0014 13.8 1.4 17 128-144 109-125 (280)
132 PRK10513 sugar phosphatase; Pr 20.5 61 0.0016 13.4 4.0 58 2-61 1-61 (270)
133 PRK13660 hypothetical protein; 20.5 61 0.0016 13.4 5.2 114 3-123 11-128 (183)
134 PRK04537 ATP-dependent RNA hel 20.4 62 0.0016 13.4 7.7 61 6-71 88-167 (574)
No 1
>TIGR01198 pgl 6-phosphogluconolactonase; InterPro: IPR005900 6-phosphogluconolactonase (3.1.1.31 from EC) is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. 6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate. ; GO: 0017057 6-phosphogluconolactonase activity, 0006098 pentose-phosphate shunt.
Probab=100.00 E-value=0 Score=400.79 Aligned_cols=225 Identities=31% Similarity=0.485 Sum_probs=199.5
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHH
Q ss_conf 94898999999999999999999972897799987986469999878763----07953238998132100356732027
Q gi|254780505|r 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERFVPLENLRSNQ 83 (234)
Q Consensus 8 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~V~~~~~~Sn~ 83 (234)
||++.+++.+.+++.|...++.++++++.|.|+|||||||.+||+.|+.. ++||+||++||+||||||.+|++||+
T Consensus 1 v~~~~~~~~~~l~~~~~~~~~~Al~~~~~~~~alSGGr~p~~L~~~La~~~~~~~~~W~~~~~~l~DER~VP~~h~dSN~ 80 (251)
T TIGR01198 1 VFSNSAELAEALAERIATKLQKALAERGQFLLALSGGRSPIALLEALAAQEAGSKLDWSRIHLFLGDERYVPLDHADSNT 80 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCHHHH
T ss_conf 96337789999999999999999997689689982487457899997786343658802157886323214798804668
Q ss_pred HHHHHHHHCCCCCCCCEEECCCCCC-----CHHHHHHHHHHHHHHHCCC------CCCEEEECCCCCCCEEEECC---CC
Q ss_conf 8899976235677632144458878-----9899999999999631587------76489944788771434027---86
Q gi|254780505|r 84 SFISKFFLQNKAQKASFIPLYYPQK-----TIEEAIRIANEKICQLIHF------PFDVVVLGMGIDGHTASFFP---KG 149 (234)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~Dl~lLGiG~DGH~ASlFP---~~ 149 (234)
+++|++||++..+++.+||.+.+.. +++++++.|++.++....+ .|||+|||||+||||||||| ++
T Consensus 81 ~~~r~~LL~~~~i~~~~i~~~~~~~~~~g~~~e~~A~~y~~~l~~~~~~~~~~~p~FDl~lLGmG~DGHtASLFPGet~~ 160 (251)
T TIGR01198 81 GLAREALLDRVAIPASNIHPMPTELSELGADIEEAAELYEQELAAAFQPEAGSFPVFDLLLLGMGPDGHTASLFPGETHT 160 (251)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEECCCCCCCCC
T ss_conf 99999974036786214776776663226865035899999988762256778872105775559873531038887654
Q ss_pred CCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHC-CCCCCCCCHHHHH-HCCCCC
Q ss_conf 41002215667431899538998721587087888415829999818348999999980-8983206089996-189996
Q gi|254780505|r 150 DTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAIS-GDDALEMPIRAIL-WNAQSP 227 (234)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~-~~~~~~~Pas~ll-~~~~~~ 227 (234)
+.+...........++..+++++|++|||||++.|++|++++|+|.|+.|+.+++++++ +.....+|+..++ .+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~sp~pP~~R~tlTlp~l~~a~~V~l~~~G~~K~~~l~~~~~~~~~~~~~P~~~~~P~~~~~~ 240 (251)
T TIGR01198 161 PALQETERGSATLVTVLTKSPKPPHERITLTLPALNAARKVLLLIAGEEKRAVLAEALAVEAEPLSLPAAGVLPHSGKLL 240 (251)
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCEECCHHHHHHHHHEEEEEECHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCEE
T ss_conf 11134437874178851783686965132287999743240432306267899999961576663563100068998468
Q ss_pred EEEEE
Q ss_conf 89983
Q gi|254780505|r 228 LEVHW 232 (234)
Q Consensus 228 ~~V~W 232 (234)
.+|+.
T Consensus 241 W~~d~ 245 (251)
T TIGR01198 241 WLLDY 245 (251)
T ss_pred EEECH
T ss_conf 76415
No 2
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=100.00 E-value=0 Score=383.29 Aligned_cols=214 Identities=36% Similarity=0.534 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999999999999999728977999879864699998787630-795323899813210035673202788999762
Q gi|254780505|r 13 KRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN-VDWHKVVVTLVDERFVPLENLRSNQSFISKFFL 91 (234)
Q Consensus 13 ~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~-~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll 91 (234)
+++++++|+.+++.++++|++++.++|+||||+||..+|+.|++.. +||+||++|++||||||.+|++||+++++++|+
T Consensus 1 ~~la~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~~~ldw~~v~~~~~DER~V~~~~~~Sn~~~~~~~l~ 80 (219)
T cd01400 1 EALAEALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAAPALDWSKVHVFLGDERCVPPDDPDSNYRLAREALL 80 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCHHEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 97999999999999999999779889998489779999999855458990363899600344699762549999999853
Q ss_pred CCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCEEEECC
Q ss_conf 35677632144458878989999999999963158--7764899447887714340278641002215667431899538
Q gi|254780505|r 92 QNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH--FPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKD 169 (234)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~~~~~~~~~~ 169 (234)
++.+.+..+++.+....+++++++.|++.+.+..+ ++||+++||||+||||||||||++.+. .++...+..+..
T Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~y~~~i~~~~~~~~~~Dl~lLGmG~DGHiASLFP~~~~~~----~~~~~~v~~~~~ 156 (219)
T cd01400 81 SHVAIPAANIHPIPTELGPEDAAAAYEKELRALFGGVPPFDLVLLGMGPDGHTASLFPGHPALL----EETDRLVVAVTD 156 (219)
T ss_pred CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC----CCCCCEEEEECC
T ss_conf 2479989995389998899999999999999853888886489974668874101379983433----457762895068
Q ss_pred CC-CCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEEC
Q ss_conf 99-87215870878884158299998183489999999808983206089996189996899833
Q gi|254780505|r 170 YT-SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWT 233 (234)
Q Consensus 170 ~~-~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~W~ 233 (234)
.+ +|++|||||++.|++|++|+++++|++|+++++++++++.+.+|||++|+.|+.. |+|.
T Consensus 157 ~~~~p~~RiTltl~~I~~a~~i~ll~~G~~K~~~v~~~l~~~~~~~~Pas~l~~~~~~---v~w~ 218 (219)
T cd01400 157 SPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPDPEELPAARVLPRPGE---VLWF 218 (219)
T ss_pred CCCCCCCCEECCHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCE---EEEE
T ss_conf 9989983635489999711848999708899999999981899876666887289973---8984
No 3
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=378.23 Aligned_cols=225 Identities=28% Similarity=0.400 Sum_probs=199.2
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC---CCCCCEEEEECCCCCCCCCCCC
Q ss_conf 2899948989999999999999999999728977999879864699998787630---7953238998132100356732
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN---VDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~---~~w~kv~~~~~DER~V~~~~~~ 80 (234)
++++++++++++++.+++.+...+...+.+++.++|+||||+||..+|+.|++.. +||+||++||+|||+||.+|++
T Consensus 1 m~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgGsTP~~~ye~L~~~~~~~~~w~~v~~f~~DEr~vp~~~~~ 80 (238)
T COG0363 1 MKLIIFEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGGSTPLALYEALVKLPQGQLDWSKVTIFNLDERVVPPDDPE 80 (238)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCCCCCH
T ss_conf 94486389999999999999999974020167579997689887999999996325689831338991631116998841
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHH-HHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCC
Q ss_conf 02788999762356776321444588789899999-99999963158776489944788771434027864100221566
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIR-IANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTH 159 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~ 159 (234)
||+++++++|+++..+++.+++... ..+++.+++ +|++.+...+ +||+++||||+||||||||||++.+...++..
T Consensus 81 Sn~~~~~~~l~~~~~~~~~~i~~~~-~~~~~~e~~~~ye~~i~~~~--~~Dl~lLG~G~DGHias~fP~~~~l~~~~~~~ 157 (238)
T COG0363 81 SNYGLMRRNLFDHIDIPAEFIHNGD-ASDPDAECAARYEAKLPSAG--GFDLILLGMGEDGHIASLFPGTPALDSATTEE 157 (238)
T ss_pred HHHHHHHHHHHCCCCCCHHHCCCCC-CCCCHHHHHHHHHHHCCCCC--CCCEEEECCCCCCCCCCCCCCCCHHCCCCCHH
T ss_conf 3999999986462567286547887-55615789887886453247--87889975668875111699982010234421
Q ss_pred CCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEEC
Q ss_conf 74318995389987215870878884158299998183489999999808983206089996189996899833
Q gi|254780505|r 160 TPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWT 233 (234)
Q Consensus 160 ~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~W~ 233 (234)
....++....+..|.+|||||++.|++|++|+|+++|++|+.+++++++++.+..|||+.|+.|++ +.++|.
T Consensus 158 ~~~~~~~~~~~~~P~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~~~~~Pas~l~~~~~--~~~~~d 229 (238)
T COG0363 158 ANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPVTELYPASILQLHPN--VTWFLD 229 (238)
T ss_pred HCEEEECCCCCCCCCCCEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHCCCC--EEEEEC
T ss_conf 131461489998986528837899951887999970817899999996499866476899810897--199984
No 4
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=100.00 E-value=0 Score=366.78 Aligned_cols=228 Identities=20% Similarity=0.243 Sum_probs=195.4
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCC
Q ss_conf 289994898999999999999999999972897-79998798646999987876----30795323899813210-0356
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGT-ASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~-~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~ 77 (234)
+||+|++|+++|++++|+.|++.|++++++++. ++|+||||+||..+|+.|.+ ..+||++|++|++|||+ ||.+
T Consensus 1 Mki~I~~~~~els~~aA~~i~~~i~~~~~~~~~~~~l~la~G~tp~~~y~~L~~~~~~~~i~w~~v~~f~~DEy~gvp~~ 80 (264)
T PRK00443 1 MRLIILKTAEEVGKWAARHIVNRINAFLPTKDRPFVLGLATGSTPLGTYKALIELHKAGKIDFSRVTTFNLDEYVGLPKD 80 (264)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECEECCCCCCC
T ss_conf 96999799999999999999999999886238973999689889899999999998616998568599923012689977
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE---
Q ss_conf 73202788999762356776321444588-78989999999999963158776489944788771434027864100---
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS--- 153 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~--- 153 (234)
|++||+++++++|++++.++..+++.+.. ..+++++|++|++.+.+. ++||++|||||+||||||||||++..+
T Consensus 81 ~~~S~~~~l~~~ll~~l~i~~~ni~~~~g~~~d~~~~~~~ye~~i~~~--ggiDl~lLGiG~dGHiafNePgs~~~~~t~ 158 (264)
T PRK00443 81 HPESYRSFMHENFFDHVDIPPENINILNGNADDIEAECRRYEEKIKSY--GGIDLQILGIGENGHIAFNEPGSSLASRTR 158 (264)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCEECCCCCCCCCCCCE
T ss_conf 607799999999886369869871048888789999999999999870--898689971478874123789986677832
Q ss_pred -EECCCCCCC---CEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf -221566743---1899538998721587087888415829999818348999999980898320608999618999689
Q gi|254780505|r 154 -IALDTHTPR---SVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234)
Q Consensus 154 -~~~~~~~~~---~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234)
+.++..+.. .+...+.+..|++|||||++.|++|++|+|+|+|++|+++|+++++|+++.+||||+|+.|+++.++
T Consensus 159 vv~L~~~t~~~~~~~~~~~~~~vP~~~ITlg~~~I~~A~~i~lla~G~~KA~~v~~~leg~~t~~~PAS~Lq~H~~~~~~ 238 (264)
T PRK00443 159 IKTLTEDTRVANSRFFDSDIEQVPKYALTVGIGTILDAKEIMLLATGHNKAEAVKAAVEGPVNHMCPASALQLHPNATVV 238 (264)
T ss_pred EEECCHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEE
T ss_conf 79686788887501457873448973598378998227879999668589999999974999887783996549988999
Q ss_pred EEEC
Q ss_conf 9833
Q gi|254780505|r 230 VHWT 233 (234)
Q Consensus 230 V~W~ 233 (234)
+..+
T Consensus 239 lD~~ 242 (264)
T PRK00443 239 LDEE 242 (264)
T ss_pred ECHH
T ss_conf 8889
No 5
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=359.90 Aligned_cols=226 Identities=20% Similarity=0.226 Sum_probs=194.1
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCC
Q ss_conf 2899948989999999999999999999-7289779998798646999987876----30795323899813210-0356
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGI-TNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i-~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~ 77 (234)
+||+|++|+++|++.+|+.+++.|++.. ++++.|+|+||||+||..+|+.|++ ..+||++|++|++|||+ ||.+
T Consensus 1 MkiiI~~d~~~~~~~aA~~i~~~i~~~~~~~~~~~~i~LsgG~tP~~~y~~L~~~~~~~~i~~~~v~~f~~DEy~gl~~~ 80 (253)
T PTZ00285 1 MRIVISEDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPRD 80 (253)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCC
T ss_conf 95999789999999999999999998665039982999699834999999999998615998579599736322278988
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE-
Q ss_conf 73202788999762356776321444588-7898999999999996315877648994478877143402786410022-
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA- 155 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~- 155 (234)
|++||+.+++++|++++.++..+++.+.. ..+++++|++|++.+.+. ++||+++||||+||||||||||++..+..
T Consensus 81 ~~~S~~~~~~~~l~~~v~ip~~~i~~~~~~~~d~~~~~~~ye~~i~~~--ggiDl~lLGiG~dGHiafNePgs~~~~~t~ 158 (253)
T PTZ00285 81 HPQSYHYFMKENFFDHVDIKEENRHILNGTAPDLEEECRRYEEKIRAV--GGIDLFLAGIGTDGHIAFNEPGSSLDSRTR 158 (253)
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCEECCCCCCCCCCCCE
T ss_conf 845499999999874179979987778999879999999999999972--898789981378885213789985555414
Q ss_pred ---CCCCCCC---CEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf ---1566743---1899538998721587087888415829999818348999999980898320608999618999689
Q gi|254780505|r 156 ---LDTHTPR---SVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234)
Q Consensus 156 ---~~~~~~~---~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234)
++..+.. .....+.+..|++|||||++.|++||+|+|+|+|++|++||+++++|+++.+||||.|+.|+++.++
T Consensus 159 vv~l~~~t~~~~~~~f~~~~~~vP~~~iTlg~~~I~~Ak~I~lla~G~~KA~av~~~leg~~t~~~PAS~Lq~H~~~~~~ 238 (253)
T PTZ00285 159 VKSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGVTHMCPASALQMHPAAVLC 238 (253)
T ss_pred EEECCHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEE
T ss_conf 79744888987765307862249981798485998726889999538389999999973999887661986449988999
Q ss_pred EE
Q ss_conf 98
Q gi|254780505|r 230 VH 231 (234)
Q Consensus 230 V~ 231 (234)
+.
T Consensus 239 lD 240 (253)
T PTZ00285 239 LD 240 (253)
T ss_pred EE
T ss_conf 84
No 6
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=355.63 Aligned_cols=223 Identities=18% Similarity=0.223 Sum_probs=191.3
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCCC
Q ss_conf 28999489899999999999999999997289779998798646999987876----30795323899813210-03567
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLEN 78 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~~ 78 (234)
.+|..++|+++|++.+|+.|+..| ++++.++|+||||+||.++|+.|.+ .+++|++|++|++|||+ ||.+|
T Consensus 1 ~~i~~~~dy~~~s~~aa~~i~~~i----~~k~~~~l~latG~TP~~~Y~~L~~~~~~~~l~~~~v~~f~lDEy~glp~~~ 76 (236)
T PRK09762 1 QTLQQVENYTALSERASEYLLAVI----RSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTM 76 (236)
T ss_pred CCCEECCCHHHHHHHHHHHHHHHH----HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECEEECCCCCCC
T ss_conf 972004899999999999999999----8789929995898898999999999997179984668999252754888986
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE----E
Q ss_conf 320278899976235677632144458878989999999999963158776489944788771434027864100----2
Q gi|254780505|r 79 LRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS----I 154 (234)
Q Consensus 79 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~----~ 154 (234)
++||+.+++++|++++.++..+++.+......+.+|++|++.+.+. ++||+++||||.||||||||||++... +
T Consensus 77 ~~S~~~~l~~~l~~~v~i~~~~~~~~~~~~~~e~ec~~~~~~I~~~--ggiDl~lLGiG~nGHiafNePg~~~~~~t~v~ 154 (236)
T PRK09762 77 PGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARK--GGLDLCVLGLGKNGHLGLNEPGESLQPACHIS 154 (236)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEECCCCCCEEEECCCCCCCCCCEEEE
T ss_conf 0428999999724546997998769998865599999999999860--89768995257786146258898677861479
Q ss_pred ECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEE
Q ss_conf 215667431899538998721587087888415829999818348999999980898320608999618999689983
Q gi|254780505|r 155 ALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHW 232 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~W 232 (234)
.+++.+...-.+.....+|.++||||++.|++||+|+|+|+|++|++||+++++|++++.||||+|+.|+++++.+.=
T Consensus 155 ~L~~~t~~~~~~~~~~~~P~~aiTmGi~~Im~Ar~Iilla~G~~Ka~av~~~l~g~vt~~~PAS~Lq~Hp~~~~~lDe 232 (236)
T PRK09762 155 QLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHPNFICLIDE 232 (236)
T ss_pred ECCHHHHHHHHHCCCCCCCCCCEECCHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEEEH
T ss_conf 887753898862465679864364478899725879999538179999999973999887445998409986999657
No 7
>KOG3147 consensus
Probab=100.00 E-value=0 Score=339.03 Aligned_cols=214 Identities=27% Similarity=0.393 Sum_probs=188.1
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 28999489899999999999999999997289779998798646999987876---307953238998132100356732
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI---INVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~---~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
.++.+|++.+++..++++++.+....+++++|.|+|+|||||.+..+++.|.. ..++|+||++||+|||+||.+|++
T Consensus 9 ~~~~v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGGSLi~~L~~~l~~~~~~~i~w~kW~if~~DER~Vp~~~~d 88 (252)
T KOG3147 9 VKVIVFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGGSLIQVLSKLLESPYQDDIDWSKWHIFFVDERVVPLDDPD 88 (252)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 23343366899999999999999999875188599997387599999987334444787765507998742236777875
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCC--CCHHHHHHHHHHHHHHHCCC----CCCEEEECCCCCCCEEEECCCCCCCEE
Q ss_conf 027889997623567763214445887--89899999999999631587----764899447887714340278641002
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQ--KTIEEAIRIANEKICQLIHF----PFDVVVLGMGIDGHTASFFPKGDTLSI 154 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~Dl~lLGiG~DGH~ASlFP~~~~l~~ 154 (234)
|||+..+++++++++.+..+++.+++. .+.++++..|+..+.+.... .|||+|||||+||||||||||++.+.
T Consensus 89 SNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v~~~s~p~FDL~LLG~GpDGHtaSLFP~~~~l~- 167 (252)
T KOG3147 89 SNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALVANDSFPVFDLLLLGMGPDGHTASLFPGHPLLN- 167 (252)
T ss_pred CCHHHHHHHHHHHCCCCCCCEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCHHHH-
T ss_conf 4479999864541788767278789466357888999999999997366877630078861479887420389961010-
Q ss_pred ECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 21566743189953899872158708788841582999981834899999998089832060899961
Q gi|254780505|r 155 ALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILW 222 (234)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~ 222 (234)
+..+..+..++++++|++|||+|+++|+.|+++.|+++|+.|+++++.+++... ..+|++++..
T Consensus 168 ---e~~~wV~~itdSPkpPp~RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~~-~~lPaa~V~~ 231 (252)
T KOG3147 168 ---EKLKWVVPITDSPKPPPKRITLTLPVINHAKNVAFVVCGASKAEIVKAILEDKE-KKLPAALVNP 231 (252)
T ss_pred ---CCCCEEEEECCCCCCCCCCEEEEHHHHHHHHCEEEEEECCCHHHHHHHHHHCCC-CCCCCHHEEC
T ss_conf ---146779995789988975379723776322125999957524676999986466-5598011111
No 8
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=100.00 E-value=0 Score=339.38 Aligned_cols=213 Identities=23% Similarity=0.245 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCCCCCCHHHHHH
Q ss_conf 99999999999999999997289779998798646999987876----30795323899813210-03567320278899
Q gi|254780505|r 13 KRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLENLRSNQSFIS 87 (234)
Q Consensus 13 ~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~~~~Sn~~~~~ 87 (234)
++|++++|+.+.+ .|+++++++|+||||+||+.+|+.|++ ..++|+||++|++|||+ ||.+|++||+++++
T Consensus 1 e~ls~~aa~~i~~----~i~~~~~~~ialsGG~tP~~~y~~L~~~~~~~~i~w~~v~~f~~DE~~~v~~~~~~Sn~~~~~ 76 (232)
T cd01399 1 EEMSEAAAELIAE----LIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMR 76 (232)
T ss_pred CHHHHHHHHHHHH----HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 9799999999999----999779869998998789999999999886349975793899274234789505588999999
Q ss_pred HHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEE----ECCCCCC-
Q ss_conf 9762356776321444588-789899999999999631587764899447887714340278641002----2156674-
Q gi|254780505|r 88 KFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSI----ALDTHTP- 161 (234)
Q Consensus 88 ~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~----~~~~~~~- 161 (234)
++|++++.++..+++.+.. ..++++++++|++.+++. ++||+++||||+|||||+|+||++.... .++..+.
T Consensus 77 ~~ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~--~~~Dl~lLG~G~DGH~AFNePgs~~~~~~~~v~L~~~~~~ 154 (232)
T cd01399 77 ENLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAEA--GGIDLQLLGIGENGHIGFNEPGSSLDSRTRVVTLDESTRQ 154 (232)
T ss_pred HHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEECCCCCCCEECCCCCCCCCCCCCEEECCHHHHH
T ss_conf 98642579998985788987569999999999999872--8985899804688604426899865667515758788898
Q ss_pred -CCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf -3189953899872158708788841582999981834899999998089832060899961899968998
Q gi|254780505|r 162 -RSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 (234)
Q Consensus 162 -~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~ 231 (234)
........+.+|++|||||++.|++|++|+|+++|++|+++++++++|+++.+|||+.|+.|+++.+++.
T Consensus 155 ~~~~~~~~~~~~P~~riTlt~~~i~~a~~i~~~~~G~~Ka~~v~~~l~g~~~~~~PAs~l~~h~~~~~~~D 225 (232)
T cd01399 155 ANARFFDGDEDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPVTEECPASILQLHPNVTVILD 225 (232)
T ss_pred HHHHCCCCCCCCCCEEEECCHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 86421699444886214257889960886999965827999999997399987668498654998799985
No 9
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=100.00 E-value=0 Score=331.71 Aligned_cols=217 Identities=16% Similarity=0.215 Sum_probs=175.1
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HCCCCCCEEEEECCCCCC-CCCCC
Q ss_conf 28999489899999999999999999997289779998798646999987876---307953238998132100-35673
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI---INVDWHKVVVTLVDERFV-PLENL 79 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~---~~~~w~kv~~~~~DER~V-~~~~~ 79 (234)
+||+|++|++++++.+|+.|++.| ++++.++|+||||+||.++|+.|++ ..++|+||++|++|||.+ +.+++
T Consensus 1 Mkiii~~~~~e~s~~aA~~i~~~i----~~~~~~~l~LatGsTP~~~y~~L~~~~~~~~~~~~v~~f~lDE~~~~~~~~~ 76 (239)
T PRK12358 1 MKIIITKDYEEMSRVAAHHLLGYM----SKTKRVNLAITAGSTPKGMYEYLTTLVKGKAWYDNCHYYNFDEIPFRGKEGE 76 (239)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHH----HHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCH
T ss_conf 959996999999999999999999----7489948997998798999999999962578842179996105558985553
Q ss_pred CCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE-----E
Q ss_conf 20278899976235677632144458878989999999999963158776489944788771434027864100-----2
Q gi|254780505|r 80 RSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS-----I 154 (234)
Q Consensus 80 ~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~-----~ 154 (234)
.+++.+++++|+++..++..+++... .+.++.|++.+... ++||+++||||+||||||||||++.+. +
T Consensus 77 ~~~~~~l~~~l~~~~~i~~~~i~~~~-----~e~~~~ye~~i~~~--ggiDl~lLGiG~nGHiafnePg~~~~~~~~~~v 149 (239)
T PRK12358 77 GVTITNLRNLFFTPAGIKEENIHKLT-----IDNYREHDQKLARE--GGLDLVVLGLGADGHFCGNLPGTTHFHDQTVEV 149 (239)
T ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCC-----HHHHHHHHHHHHHC--CCCCEEEEECCCCCCEEECCCCCCCCCCCEEEE
T ss_conf 56999999965775799978869997-----67799999999765--997689970457774320689987667834999
Q ss_pred ECCCCCCCC----EEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 215667431----8995389987215870878884158299998183489999999808983206089996189996899
Q gi|254780505|r 155 ALDTHTPRS----VIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEV 230 (234)
Q Consensus 155 ~~~~~~~~~----~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V 230 (234)
.+....... .........|.+|||||++.|++||+|+|+|+|++|++||+++++|+.++.||||+|+.|+++.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~vP~~aiTmgi~~I~~Ak~Iillv~G~~Ka~av~~~l~g~vt~~~PAs~Lq~H~~~~~~l 229 (239)
T PRK12358 150 PIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMAAKNLLIIVSGKGKAQALKNVLQGPVTEDVPASILQLHPSLTVIL 229 (239)
T ss_pred ECCHHHHHHHHHCCCCCCHHHCCCEEEECCHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHEECCCEEEEE
T ss_conf 75389999987122479822288514886789996087689995784899999999749999865549871089879998
Q ss_pred E
Q ss_conf 8
Q gi|254780505|r 231 H 231 (234)
Q Consensus 231 ~ 231 (234)
.
T Consensus 230 D 230 (239)
T PRK12358 230 D 230 (239)
T ss_pred E
T ss_conf 0
No 10
>TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process.
Probab=100.00 E-value=0 Score=330.18 Aligned_cols=227 Identities=22% Similarity=0.230 Sum_probs=197.2
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCC
Q ss_conf 28999489899999999999999999-997289779998798646999987876----30795323899813210-0356
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSI-GITNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~ 77 (234)
+|+.+.+++|++++-+|.+|++.|++ .-++...|+||||||+||.++|+.|.+ .++++++|+.|++|||. ++.+
T Consensus 1 Mr~~~~~t~E~~sk~AA~~i~~~I~~Fkp~~~~PFVLGLpTGgTP~g~Yk~LI~l~qa~~~sF~~v~TfNlDEY~GL~~~ 80 (260)
T TIGR00502 1 MRLIILQTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPVGTYKQLIRLYQAGKISFQNVVTFNLDEYVGLSEE 80 (260)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 94346677768999999999998640377623674610688887578999999985048743241055314100158788
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE-
Q ss_conf 73202788999762356776321444588-7898999999999996315877648994478877143402786410022-
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA- 155 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~- 155 (234)
||+|++.+|.++||+|..+++..++++.+ +.+.+.+|++|++++++++ .+||.+||+|.|||||+|+||++.-++.
T Consensus 81 hP~SYh~FM~~~fF~HId~~~~~i~IlnGna~dl~aeCr~YE~~i~s~G--~i~lf~gGiG~dGHIaFNEPgSsl~sRTr 158 (260)
T TIGR00502 81 HPESYHSFMHNNFFQHIDIKPENINILNGNADDLEAECRRYEEKIKSYG--GIDLFLGGIGADGHIAFNEPGSSLESRTR 158 (260)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CEEEEEEEECCCCCEEECCCCCCCCCCCE
T ss_conf 8852137866512354477734455888686557889989999998518--81789730248886321688887355852
Q ss_pred -----CCCCCCCCEEEE-CCCCCCCEEEEECHHHHHC-CCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCE
Q ss_conf -----156674318995-3899872158708788841-582999981834899999998089832060899961899968
Q gi|254780505|r 156 -----LDTHTPRSVIAI-KDYTSNEQRMTMTFSALHD-AQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPL 228 (234)
Q Consensus 156 -----~~~~~~~~~~~~-~~~~~p~~RITlt~~~l~~-a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~ 228 (234)
-++..++..++. +....|..++|||+++|++ |++|++||+|+.||.||+++++|.++..+|||.|+-|.+..+
T Consensus 159 i~tL~~~T~~ANsRFF~gdv~~VPk~ALt~Gi~Tildfs~~vllL~~G~~KA~A~~~~~EG~v~~~~t~SaLqlH~~~~~ 238 (260)
T TIGR00502 159 IKTLTEDTIIANSRFFEGDVNQVPKYALTVGIGTILDFSKEVLLLVSGHQKAEAVQKAVEGNVNHDWTISALQLHKHVIV 238 (260)
T ss_pred EEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEE
T ss_conf 46236222455332048180402622433416889988866642103647899999983578675224518524884289
Q ss_pred EEEE
Q ss_conf 9983
Q gi|254780505|r 229 EVHW 232 (234)
Q Consensus 229 ~V~W 232 (234)
.+.-
T Consensus 239 v~D~ 242 (260)
T TIGR00502 239 VCDE 242 (260)
T ss_pred EECH
T ss_conf 8243
No 11
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=0 Score=322.15 Aligned_cols=224 Identities=19% Similarity=0.204 Sum_probs=196.1
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCCCCC
Q ss_conf 999489899999999999999999997289779998798646999987876----30795323899813210-0356732
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLENLR 80 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~~~~ 80 (234)
..||++.++.+..+|..|+..|++..+++..|+|||++||||.++|+.|.+ ..++|++|..|++|||+ ++++|++
T Consensus 38 t~if~~~~e~s~~iA~eIa~~Ir~kq~~gk~~VLGLATGSTP~~vY~eLIr~hke~~LSF~nV~tFNLDEY~gL~~~~~q 117 (660)
T PRK02122 38 TVIYESSEEASNAVAQEIATLIRERQAENRPCVLGLATGSSPISVYAELIRMHKEEGLSFRNVITFNLDEYYPMSPESLQ 117 (660)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCH
T ss_conf 50148989999999999999999998559981897289888799999999998716997204089956320796999823
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCC---CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE----
Q ss_conf 0278899976235677632144458878---989999999999963158776489944788771434027864100----
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQK---TIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS---- 153 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~---- 153 (234)
|++.+|+++|++|+.++..+++++++.. +.++.|+.|++.++..+ ++|++|||+|.|||||+|+||++..+
T Consensus 118 SY~~fM~e~LFdhIDI~~eNihiPdG~~~~e~i~~~C~~YE~~I~~~G--GIDlQLLGIG~nGHIGFNEPGS~~~S~TRv 195 (660)
T PRK02122 118 SYFRFMKEHLFDHVDIPPENIHIPDGTIPKEAILQYCRDYEQKIESAG--GIDFQLLGIGRTGHIGFNEPGSHLNSRTRL 195 (660)
T ss_pred HHHHHHHHHHCCCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 499999987024469989980489999862789999999999999759--988899667888721307999867788558
Q ss_pred EECCCCC--CCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 2215667--43189953899872158708788841582999981834899999998089832060899961899968998
Q gi|254780505|r 154 IALDTHT--PRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 (234)
Q Consensus 154 ~~~~~~~--~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~ 231 (234)
+.++..+ ++...+......|.++||||+++||+||+|+|+|+|++|++|++++++|+++..||||+|+.|+++++.|.
T Consensus 196 V~L~~~Tr~dnar~F~~~e~VP~~AITMGI~TIm~AkkIiLlA~Ge~KA~aI~k~vEG~vt~~~PAS~LQ~H~n~tvilD 275 (660)
T PRK02122 196 VTLDHITRKDASSDFGGIDNVPRSAITMGVSTILKAKRIVLLAWGEGKASIIKKTVEGEISDTVPASYLQNHPNATFVLD 275 (660)
T ss_pred EECCHHHHHHHHHHCCCCCCCCCHHEECCHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEC
T ss_conf 98988899999864188121763202045888970885899974877999999995699989866699951898799955
No 12
>pfam01182 Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.
Probab=100.00 E-value=0 Score=326.22 Aligned_cols=211 Identities=22% Similarity=0.199 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCC-CCCCCCCCHHHHHHHHHHC
Q ss_conf 99999999999997289-7799987986469999878763----0795323899813210-0356732027889997623
Q gi|254780505|r 19 LAKKVAEQLSIGITNKG-TASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERF-VPLENLRSNQSFISKFFLQ 92 (234)
Q Consensus 19 ~a~~i~~~i~~~i~~~~-~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~-V~~~~~~Sn~~~~~~~ll~ 92 (234)
+|.+++.+|.+.+...+ .|+|+||||+||.++|+.|++. +++|++|++|++|||+ +|.+|++||+.+++++|++
T Consensus 2 ~~~~~~~~i~~~~~~~~k~~vlgLatG~TP~~~Y~~L~~~~~~~~i~~~~v~~F~lDEyvgl~~~~p~S~~~~l~~~l~~ 81 (236)
T pfam01182 2 AANYIINRINSFKPTAERPFVLGLPTGSTPLGTYKKLIEAYKAGRVSFKHVVTFNMDEYVGLPPEHPESYHSFMYNNFFN 81 (236)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 37999999996198999987998389878899999999999817997367699837044588976423599999999873
Q ss_pred CCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEE----ECCCCC--CCCEE
Q ss_conf 56776321444588-789899999999999631587764899447887714340278641002----215667--43189
Q gi|254780505|r 93 NKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSI----ALDTHT--PRSVI 165 (234)
Q Consensus 93 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~----~~~~~~--~~~~~ 165 (234)
++.++..+++.+++ ..+++++|++|++.+++. ++||+++||||+|||+||||||++..+. .++..+ .+...
T Consensus 82 ~i~Ip~eni~~~~g~~~d~~~~~~~ye~~I~~~--GgiDl~lLGiG~nGHiafNePgs~~~~~t~i~~l~~~t~~~~~~~ 159 (236)
T pfam01182 82 HIDIPPENIHILNGNAADIDAECRNYEEKIKSY--GKIHLFMGGVGPDGHIAFNEPGSSLNSRTRIKTLTEDTIKANSRF 159 (236)
T ss_pred HCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCCEECCCCCCCCCCCCEEEECCHHHHHHHHHH
T ss_conf 559989984689999889999999999999975--793089982357884543789975678744552468999998874
Q ss_pred EE-CCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf 95-3899872158708788841582999981834899999998089832060899961899968998
Q gi|254780505|r 166 AI-KDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231 (234)
Q Consensus 166 ~~-~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~ 231 (234)
+. ..+..|.++||||++.|++|++|+|+|+|++|++|++++++|+.++.||||.|+.|+++.+.+.
T Consensus 160 f~~~~~~vP~~aiTmGi~~Il~A~~i~lla~G~~Ka~avk~~l~g~it~~~PAS~Lq~H~~~~~~lD 226 (236)
T pfam01182 160 FDNDVTKVPKYALTVGVGTLLDAEEVMILVLGKQKAFALQKAVEGKVNHMWTVSALQDHPNVLIVCD 226 (236)
T ss_pred CCCCCCCCCCEEEECCHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 1897224898579878899841780699967828999999997399998847299704998799980
No 13
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=100.00 E-value=5.1e-35 Score=234.58 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC--CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999999999999999728977999879864699998787630--795323899813210035673202788999762356
Q gi|254780505|r 17 QKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN--VDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNK 94 (234)
Q Consensus 17 ~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~--~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~ 94 (234)
+.++++++..|++.|++|+.|+|+|||||||..+|+.|.+.. .+|++|++|++||||++++|++||+.+++++|++|+
T Consensus 2 k~~~~~ia~~i~k~i~~K~~~vLGLatGSTP~~~Y~~Li~~~~~~sf~nV~tFnlDEY~~l~dh~qSy~~~m~e~lf~hI 81 (169)
T cd00458 2 KEALKFIEDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHD 81 (169)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 26899999999999960778499957998879999999999744780138998400004798763109999999854126
Q ss_pred CCCCCEEECCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEECCCCC-CCEEEECCCCCCCEEECCCCCCCCEEEECCCCC
Q ss_conf 7763214445887-89899999999999631587764899447887-714340278641002215667431899538998
Q gi|254780505|r 95 AQKASFIPLYYPQ-KTIEEAIRIANEKICQLIHFPFDVVVLGMGID-GHTASFFPKGDTLSIALDTHTPRSVIAIKDYTS 172 (234)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~D-GH~ASlFP~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (234)
.++..+++.+++. .+.+.+++.|++.+...+ +||+++||||+| ||+||||||+..++... ...
T Consensus 82 dI~~eNIh~pdG~~p~~~aac~~ye~~i~~~g--giDl~ilGIG~d~Ghia~L~pG~~~~~~~~-------------~~~ 146 (169)
T cd00458 82 IIPASNVHYVDTSLPIEKACEKYEREILDQVD--AIDLAVDGAGYRAGTVIVLVDGRKKVDYLC-------------QNT 146 (169)
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCEEEEECCCCHHHHHHH-------------HCC
T ss_conf 99999925899999978999999999998659--957798730488980688359823777887-------------228
Q ss_pred CCEEEEECHHHHHCCCE
Q ss_conf 72158708788841582
Q gi|254780505|r 173 NEQRMTMTFSALHDAQF 189 (234)
Q Consensus 173 p~~RITlt~~~l~~a~~ 189 (234)
+..-+|++.....+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~ 163 (169)
T cd00458 147 EPGVIENGIFADIRGKE 163 (169)
T ss_pred CCCHHHCCHHHHHCCCC
T ss_conf 73120122566634666
No 14
>KOG3148 consensus
Probab=99.98 E-value=9.2e-32 Score=214.65 Aligned_cols=222 Identities=21% Similarity=0.203 Sum_probs=188.2
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCC
Q ss_conf 289994898999999999999999999972-89779998798646999987876----30795323899813210-0356
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITN-KGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~-~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~ 77 (234)
+|++|.++.+..++-+|+++...|.+.... ...|+++|++||||.++|+.|.+ ..+.++.|..|+.|||. +|.+
T Consensus 1 mkliile~~d~~~ewaakyv~~ri~~f~p~~dkyf~lglptgstplg~ykklie~~k~g~~sf~yvktfnmdeyvglprd 80 (273)
T KOG3148 1 MKLIILENYDKVSEWAAKYVVNRINQFTPGGDKYFVLGLPTGSTPLGMYKKLIEFYKNGVLSFKYVKTFNMDEYVGLPRD 80 (273)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCHHHCCCCCC
T ss_conf 91798615247889999999998862588975179970678997506899999998668257898753051653188878
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE-
Q ss_conf 73202788999762356776321444588-7898999999999996315877648994478877143402786410022-
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA- 155 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~- 155 (234)
|++|+..++.++|++|..+.+.++++.++ ..+.+.+|..++++++.. +++|+.+-|+|+|||||+++||+...+..
T Consensus 81 h~esyhsfmwnnffkhidi~p~n~hildgna~dl~aec~~fe~kikea--ggidlfvggigpdghiafnepgsslvsrtr 158 (273)
T KOG3148 81 HPESYHSFMWNNFFKHIDINPANIHILDGNAADLQAECDAFERKIKEA--GGIDLFVGGIGPDGHIAFNEPGSSLVSRTR 158 (273)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCEEECCCCCHHHHHHH
T ss_conf 706778999874665344685532353585688898899999998754--884798513489874541788622454666
Q ss_pred -----CCCCCCC-CEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf -----1566743-18995389987215870878884158299998183489999999808983206089996189996
Q gi|254780505|r 156 -----LDTHTPR-SVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSP 227 (234)
Q Consensus 156 -----~~~~~~~-~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~ 227 (234)
.++...+ .+...+-.+.|.+++|.+..+.|.||+++++++|++|+-|+.++++...+..|-+|..++|+++.
T Consensus 159 vktla~dti~anarffdgd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegvnhmwtvsafqqh~~t~ 236 (273)
T KOG3148 159 VKTLAMDTILANARFFDGDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTT 236 (273)
T ss_pred HHHHHHHHHHHHCEECCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHCCCEE
T ss_conf 777768788751100178623275010675200465031379998243788999999985311036516676098627
No 15
>pfam04198 Sugar-bind Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.
Probab=98.35 E-value=3.7e-05 Score=51.56 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89999999999999999999728977999879864699998787630795323899813210035673202788999762
Q gi|254780505|r 12 KKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFL 91 (234)
Q Consensus 12 ~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll 91 (234)
.++..+.++...+..+...++. + -.|+++.|+|...+-+.|... +..+++|..+-= -+..+. ..+...+-..|-
T Consensus 31 ~~~~~~~vg~~aA~~L~~~l~~-~-~~igvswG~Tl~~~~~~l~~~--~~~~~~vV~l~G-g~~~~~-~~~~~~i~~~lA 104 (255)
T pfam04198 31 EPDTLEALGRAAAQYLSSLLKD-G-DVVGVGWGRTLSAVAEALTPK--SLRDVKFVPLIG-GLGRDG-SAHSNTVVARLA 104 (255)
T ss_pred CHHHHHHHHHHHHHHHHHHCCC-C-CEEEECCCHHHHHHHHHCCCC--CCCCCEEEECCC-CCCCCC-CCCHHHHHHHHH
T ss_conf 1689999999999999985778-9-889973568999999956977--889978997889-899887-848999999999
Q ss_pred CCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCC----CCCEEECCCC--C
Q ss_conf 35677632144458878989999-----99999996315877648994478877143402786----4100221566--7
Q gi|254780505|r 92 QNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKG----DTLSIALDTH--T 160 (234)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~----~~l~~~~~~~--~ 160 (234)
+....+..++|.|.--.+.+... ..+.+-++... ..|+++.|+|.=+.-++++... ..++...... .
T Consensus 105 ~~~~~~~~~l~aP~~~~s~~~~~~l~~e~~i~~vl~~~~--~~dial~gIG~~~~~s~~~~~g~~~~~~~~~l~~~gAvG 182 (255)
T pfam04198 105 QKFGGEYYLLPAPAYASSAALRRGLLAEPSIQEVLDLAR--RADVAIVGIGTALEMAPLVKRGFLTEEELAELRELGAVG 182 (255)
T ss_pred HHHCCEEEEEECCCCCCCHHHHHHHHHCHHHHHHHHHHH--HCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHCCCEE
T ss_conf 996997899706802699999999985958999999998--689999972477876668882799999999999889868
Q ss_pred CCCEEEECCCCC----C-CEE-EEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf 431899538998----7-215-87087888415829999818348999999980898
Q gi|254780505|r 161 PRSVIAIKDYTS----N-EQR-MTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 161 ~~~~~~~~~~~~----p-~~R-ITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
+-...+.+.... + ..| |++++..|.+.++++.++.|.+|.+++..++.|.-
T Consensus 183 di~g~f~D~~G~~v~~~~~~r~igi~l~~Lr~ip~~I~vA~G~~K~~aI~aALrgg~ 239 (255)
T pfam04198 183 EILGRFFDAEGRVVDTELNDRVIGLSLDDLRKIPKVIAVAGGESKAEAILAALRGGL 239 (255)
T ss_pred EHHHHEECCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 971321478999935645464540787996579978999678065999999983599
No 16
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=98.21 E-value=0.00012 Score=48.39 Aligned_cols=206 Identities=14% Similarity=0.102 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999999999999972897799987986469999878763079532389981321003567320278899976
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF 90 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l 90 (234)
+.+...+.++...+..+...|+.. . .|++++|+|...+-+.|.... -+++.|..+== -+...+..-+...+...+
T Consensus 92 ~~~~~~~~lg~aaA~~l~~~l~~g-d-vigV~wGrTv~a~~~~l~~~~--~~~~~vV~l~G-G~~~~~~~~~~~~~~~~~ 166 (321)
T COG2390 92 ADDSILRRLGRAAAQYLESLLKPG-D-VIGVGWGRTLSAVVDNLPPAP--LRDVKVVQLTG-GVGHADGSYNANTIALRL 166 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCC-C-EEEEECCHHHHHHHHHCCCCC--CCCEEEEECCC-CCCCCCCCCCHHHHHHHH
T ss_conf 855899999999999999857799-9-999925579999998559676--68838998889-888776666787999999
Q ss_pred HCCCCCCCCEEECCCCCCCHHHHHHHH-----HHHHHHHCCCCCCEEEECCCCCCCEEE----ECCCCCCCE----EECC
Q ss_conf 235677632144458878989999999-----999963158776489944788771434----027864100----2215
Q gi|254780505|r 91 LQNKAQKASFIPLYYPQKTIEEAIRIA-----NEKICQLIHFPFDVVVLGMGIDGHTAS----FFPKGDTLS----IALD 157 (234)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Dl~lLGiG~DGH~AS----lFP~~~~l~----~~~~ 157 (234)
-+.......++|.|.-..+++...... ...+... ...|+++.|+|+=.--+. .|.....+. ....
T Consensus 167 A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~--~~ad~alvGIG~~~~~~~~~~~g~~~~~~~~~l~~~gaV 244 (321)
T COG2390 167 AEKLGAESYLLPAPLVASSPELREALLQEPSVREVLDLA--RSADLALVGIGSLSANSTLVRSGFIYEEELEALLAKGAV 244 (321)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHH--HHCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 998499178663670078999999998482899999999--757999995477764460344269788999999967930
Q ss_pred CCCCCCEEEECCCCC--C-C-EEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC-----CCCCCHHHHHHC
Q ss_conf 667431899538998--7-2-1587087888415829999818348999999980898-----320608999618
Q gi|254780505|r 158 THTPRSVIAIKDYTS--N-E-QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD-----ALEMPIRAILWN 223 (234)
Q Consensus 158 ~~~~~~~~~~~~~~~--p-~-~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~-----~~~~Pas~ll~~ 223 (234)
-+-.-.++.....+. + . +-|++++..|.+..+++.++.|+.|++++..++.|.- +.+--|..++..
T Consensus 245 Gdi~g~ffD~~G~~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~~n~LITDe~tA~~lL~~ 319 (321)
T COG2390 245 GDILGRFFDANGQPVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGYINVLITDEATAEALLEA 319 (321)
T ss_pred EECCCCEECCCCCCCCCCCCCCEECCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHC
T ss_conf 003066232799885555657164377889732783899957860289999998479987888578999999842
No 17
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.26 E-value=0.0037 Score=39.31 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=67.2
Q ss_pred ECCHHHHHHHHHH-HHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 4898999999999-99999999997289779998798-646999987876307953238998132100356732027889
Q gi|254780505|r 9 AENKKRLAQKLAK-KVAEQLSIGITNKGTASIALSGG-LTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFI 86 (234)
Q Consensus 9 ~~~~~~l~~~~a~-~i~~~i~~~i~~~~~~~i~lsGG-stp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~ 86 (234)
.+..++|.+.... .+.+.++.||..+ -+|+++|| +|.+..|-.-.- ..+..|||+|..+|-
T Consensus 132 ~d~~~~L~el~~~g~~~~Fl~~Ai~~~--knIii~GGTgSGKTTf~kal~--------~~IP~~ER~iTIED~------- 194 (328)
T TIGR02788 132 SDKDEELLELLDAGDIKEFLRLAIASR--KNIIISGGTGSGKTTFLKALV--------KEIPKDERLITIEDT------- 194 (328)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHH--------HCCCCCCCEEEEEEE-------
T ss_conf 468999999986288879999998738--919999068971899999997--------327622527888520-------
Q ss_pred HHHHHCCCCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 9976235677632144458878-989999999999963158776489944
Q gi|254780505|r 87 SKFFLQNKAQKASFIPLYYPQK-TIEEAIRIANEKICQLIHFPFDVVVLG 135 (234)
Q Consensus 87 ~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~lLG 135 (234)
++.++++. ++.+++++... ....+--...+.++.+.....|=+|||
T Consensus 195 ~E~~~~hh---pN~V~L~ysk~v~~g~~~vt~~~Ll~scLRMrPDRI~Lg 241 (328)
T TIGR02788 195 RELFLPHH---PNKVHLFYSKGVGQGSAKVTPKDLLESCLRMRPDRILLG 241 (328)
T ss_pred ECCCCCCC---CCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 11478889---864565534642344356898999999711774057674
No 18
>PTZ00301 uridine kinase; Provisional
Probab=85.80 E-value=2.8 Score=21.64 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=32.2
Q ss_pred CCEEEEECCCC-CHHHHH-HHHHHHC---CCCCCEEEEECCCCCC-------------CCCCCCC-HHHHHHHHHHCC
Q ss_conf 97799987986-469999-8787630---7953238998132100-------------3567320-278899976235
Q gi|254780505|r 35 GTASIALSGGL-TPRFFL-EELSIIN---VDWHKVVVTLVDERFV-------------PLENLRS-NQSFISKFFLQN 93 (234)
Q Consensus 35 ~~~~i~lsGGs-tp~~~y-~~L~~~~---~~w~kv~~~~~DER~V-------------~~~~~~S-n~~~~~~~ll~~ 93 (234)
+.+.||++||| |.+..+ +.+.+.- ..-.++.++..|-|+- ..|||++ ++.++.++|...
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~~NfDhP~a~D~dLl~~~L~~L 79 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLREL 79 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 988999968876789999999999987614998079983676677876588656278899982303699999999999
No 19
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=85.23 E-value=2.7 Score=21.77 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH---CCCC
Q ss_conf 999999999997289779998798--64699998787630795323899813210035673202788999762---3567
Q gi|254780505|r 21 KKVAEQLSIGITNKGTASIALSGG--LTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFL---QNKA 95 (234)
Q Consensus 21 ~~i~~~i~~~i~~~~~~~i~lsGG--stp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll---~~~~ 95 (234)
+.-++.|++.+. +..+-+||||| ||..+ .|.++-| =.|.+-+++|.=++..+=++.=..++.+.|- ..+.
T Consensus 4 ~~~i~~ir~~VG-D~~vi~ALSGGVDSsV~A---~L~hrAI-GD~L~~vFVD~GLlR~gE~E~V~~~F~~~lg~nl~~VD 78 (319)
T TIGR00884 4 EEAIEEIREQVG-DAKVIIALSGGVDSSVAA---VLLHRAI-GDRLTCVFVDHGLLRKGEAERVVKTFSDKLGLNLVVVD 78 (319)
T ss_pred HHHHHHHHHHCC-CCEEEEEECCCHHHHHHH---HHHHHHH-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEC
T ss_conf 889999985228-846899810881589999---9998642-27604898227888766378999998753089827876
Q ss_pred CCCCEEECCCCCCCHHHH
Q ss_conf 763214445887898999
Q gi|254780505|r 96 QKASFIPLYYPQKTIEEA 113 (234)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~ 113 (234)
....|..--.+-.|||+=
T Consensus 79 A~e~FL~~L~GV~DPE~K 96 (319)
T TIGR00884 79 AKERFLSALKGVTDPEEK 96 (319)
T ss_pred CCHHHHHHCCCCCCCHHH
T ss_conf 107988752889870341
No 20
>KOG2044 consensus
Probab=84.58 E-value=3.2 Score=21.29 Aligned_cols=101 Identities=24% Similarity=0.192 Sum_probs=50.6
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCE-----------EEEECCCC-CHHHHHHHHH-------HHCCCC
Q ss_conf 9872899948989999999999999999999728977-----------99987986-4699998787-------630795
Q gi|254780505|r 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTA-----------SIALSGGL-TPRFFLEELS-------IINVDW 61 (234)
Q Consensus 1 M~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~-----------~i~lsGGs-tp~~~y~~L~-------~~~~~w 61 (234)
|.+.+-..|....+.+.+.++. +.+++-..+.|.+ +=+++-|+ .+..+-++|. ..+-.|
T Consensus 111 MNQQRsRRFRaaKeaae~~~e~--e~~ree~~~~G~~lpp~~~~e~fDSNcITPGTpFM~~La~aLrYyI~~rLn~DPgW 188 (931)
T KOG2044 111 MNQQRSRRFRAAKEAAEKEAEI--ERLREEFEAEGKFLPPKVKKETFDSNCITPGTPFMDRLAKALRYYIHDRLNSDPGW 188 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5277887776656777778899--99999998548868813321403457567997689999999999998762289560
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 3238998132100356732027889997623567763214445
Q gi|254780505|r 62 HKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY 104 (234)
Q Consensus 62 ~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~ 104 (234)
+++.++++|- -||-+.+.---.+|+..=-+..-.+.+.+.+.
T Consensus 189 kNikvIlSDA-nVPGEGEHKIM~yIR~QR~~P~~dPNT~Hcly 230 (931)
T KOG2044 189 KNIKVILSDA-NVPGEGEHKIMSYIRSQRAQPGYDPNTHHCLY 230 (931)
T ss_pred CCEEEEEECC-CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 3248998458-89985336899999971578898998633662
No 21
>TIGR00730 TIGR00730 conserved hypothetical protein TIGR00730; InterPro: IPR005269 This family of conserved hypothetical proteins has no known function. .
Probab=84.50 E-value=3.2 Score=21.27 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=8.3
Q ss_pred HHHHHHCCCEEEEECCCCCHHH
Q ss_conf 9999728977999879864699
Q gi|254780505|r 28 SIGITNKGTASIALSGGLTPRF 49 (234)
Q Consensus 28 ~~~i~~~~~~~i~lsGGstp~~ 49 (234)
-..+..+|-- .+.||+++-.
T Consensus 25 G~~~~~~G~~--lV~GGG~~g~ 44 (205)
T TIGR00730 25 GAALAGAGWG--LVYGGGRVGL 44 (205)
T ss_pred HHHHHHCCCE--EEECCCCCCH
T ss_conf 9999858956--9887987154
No 22
>PRK07429 phosphoribulokinase; Provisional
Probab=83.24 E-value=3.6 Score=20.95 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=37.2
Q ss_pred CCCEEEEECCCC-CHHHHHHHHHHHCCCCCCEEEEECCCCCC---------CCC--CCCCH-HHHHHHHHH
Q ss_conf 897799987986-46999987876307953238998132100---------356--73202-788999762
Q gi|254780505|r 34 KGTASIALSGGL-TPRFFLEELSIINVDWHKVVVTLVDERFV---------PLE--NLRSN-QSFISKFFL 91 (234)
Q Consensus 34 ~~~~~i~lsGGs-tp~~~y~~L~~~~~~w~kv~~~~~DER~V---------~~~--~~~Sn-~~~~~~~ll 91 (234)
+..+.||++||| +.+..+-.-....+.-.++.+.-.|.|+- ..+ ||++| +.++.++|.
T Consensus 6 ~rP~IIGIAGgSGSGKTTv~r~I~~~fg~~~VtvI~~DdYhk~dr~~r~~~~~t~lhP~And~dLl~e~L~ 76 (331)
T PRK07429 6 DRPVIIGVAGDSGCGKSTFLRRLADLFGEELVTVICLDDYHSLDRKQRKEIGITALDPRANNFDLMYEQLK 76 (331)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCHHCHHHHHHHHH
T ss_conf 99989998578877899999999998388877999478677788788987189878964005999999999
No 23
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=81.87 E-value=4.1 Score=20.63 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=34.6
Q ss_pred CEEEEECCCC-CHHH-HHHHHHHHCCCCCCEEEEECCCCCCCC-------------CCCCC-HHHHHHHHHHCCC
Q ss_conf 7799987986-4699-998787630795323899813210035-------------67320-2788999762356
Q gi|254780505|r 36 TASIALSGGL-TPRF-FLEELSIINVDWHKVVVTLVDERFVPL-------------ENLRS-NQSFISKFFLQNK 94 (234)
Q Consensus 36 ~~~i~lsGGs-tp~~-~y~~L~~~~~~w~kv~~~~~DER~V~~-------------~~~~S-n~~~~~~~ll~~~ 94 (234)
.+.|+++||| |.+. +.+.|.+. +.-+++.+...|.|+... +||++ +..++.++|....
T Consensus 8 ~iiIgIaG~SgSGKTTv~~~l~~~-~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQ-LGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH-HCCCCCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHHHHH
T ss_conf 699998679877889999999998-28675247652232025301667553785744823436899999999997
No 24
>PRK05480 uridine kinase; Provisional
Probab=80.47 E-value=4.6 Score=20.33 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCCEEEEECCCC-CHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 897799987986-4699998787630795323899813210035
Q gi|254780505|r 34 KGTASIALSGGL-TPRFFLEELSIINVDWHKVVVTLVDERFVPL 76 (234)
Q Consensus 34 ~~~~~i~lsGGs-tp~~~y~~L~~~~~~w~kv~~~~~DER~V~~ 76 (234)
+..+.||++||| +.+..+.......+.-.++.++-.|.|+.+.
T Consensus 4 k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~Yy~~~ 47 (209)
T PRK05480 4 KQPIIIGIAGGSGSGKTTVASTIYEELGDESIAVISQDSYYKDQ 47 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 89889999899977899999999998086875999554412473
No 25
>pfam03641 Lysine_decarbox Possible lysine decarboxylase. The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear.
Probab=79.51 E-value=4.9 Score=20.14 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHCCCEEEEECCC-CCHHHHHHHHHHHCCC--CCCEEEEECCCCCCC
Q ss_conf 97289779998798-6469999878763079--532389981321003
Q gi|254780505|r 31 ITNKGTASIALSGG-LTPRFFLEELSIINVD--WHKVVVTLVDERFVP 75 (234)
Q Consensus 31 i~~~~~~~i~lsGG-stp~~~y~~L~~~~~~--w~kv~~~~~DER~V~ 75 (234)
.-++..+.|+|+|| .|-..+++.+.-.++. -..+.+++.+.+|=+
T Consensus 49 m~~~sDafI~lPGG~GTLdElfevlt~~qlg~~~kPiil~n~~gfw~~ 96 (130)
T pfam03641 49 MARLADAFVALPGGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDP 96 (130)
T ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHH
T ss_conf 998669899907975329999999999983675799688463778999
No 26
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase; InterPro: IPR012795 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=78.51 E-value=5.3 Score=19.95 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=57.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHH--CCCCC------CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCCE-EECCC
Q ss_conf 7799987986469999878763--07953------23899813210035673202788999762356-776321-44458
Q gi|254780505|r 36 TASIALSGGLTPRFFLEELSII--NVDWH------KVVVTLVDERFVPLENLRSNQSFISKFFLQNK-AQKASF-IPLYY 105 (234)
Q Consensus 36 ~~~i~lsGGstp~~~y~~L~~~--~~~w~------kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~-~~~~~~-~~~~~ 105 (234)
.+.||+|||.==..++..|.+. ...++ ++.+..+|-.+=+.... .-...+.+...... +.-... +....
T Consensus 1 ~~lvAvSGG~DS~aLL~~L~~~~~~~~~~~~~~~~~~~a~h~nH~lR~~s~~-~~~~~v~~~c~~~~~~~~~~~~~~~~~ 79 (204)
T TIGR02432 1 KILVAVSGGVDSMALLHLLLKLQPKLKISWQIKDFKLIAAHVNHGLRPESAQ-EEAEFVQQFCEKLNIPLEIKKLVDVKA 79 (204)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHH-HHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 9788862864279999999997663278778875068999961778841589-999999999996189569984212411
Q ss_pred ----CCCCHHHHHH--HHHHHHHHHCCCC-CCEEEEC
Q ss_conf ----8789899999--9999996315877-6489944
Q gi|254780505|r 106 ----PQKTIEEAIR--IANEKICQLIHFP-FDVVVLG 135 (234)
Q Consensus 106 ----~~~~~~~~~~--~~~~~~~~~~~~~-~Dl~lLG 135 (234)
...+.|++|+ +|+...+...... +|.+++|
T Consensus 80 ~~~~~~~~~E~~AR~~RY~~f~~~~~~~~~~~~i~tA 116 (204)
T TIGR02432 80 LAKGKKKNLEEAAREARYAFFEEIAKKHGKADYILTA 116 (204)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 0122476778999999999999999972994089972
No 27
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=78.16 E-value=5.4 Score=19.89 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=49.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEE---CCCCCCCHH
Q ss_conf 799987986469999878763--079532389981321003567320278899976235677632144---458878989
Q gi|254780505|r 37 ASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIP---LYYPQKTIE 111 (234)
Q Consensus 37 ~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~---~~~~~~~~~ 111 (234)
..|++|||.--..++..|.+. ... -++..+.+|..+=+ ++.+ -...+++. .....++..... ......+.+
T Consensus 2 i~vavSGG~DS~~Ll~~l~~~~~~~~-~~l~a~hvdh~lr~-~s~~-~~~~v~~~-~~~~~i~~~i~~~~~~~~~~~~~e 77 (185)
T cd01992 2 ILVAVSGGPDSMALLHLLSELKPRLG-LRLVAVHVDHGLRP-ESDE-EAAFVADL-CAKLGIPLYILVVALAPKPGGNLE 77 (185)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCC-CCHH-HHHHHHHH-HHHCCCCEEEEEEEECCCCCCCHH
T ss_conf 99996784999999999999999749-94899998189888-8889-99999999-998599889999775367899999
Q ss_pred HHHHH--HHHHHHHHCCCCCCEEEECC
Q ss_conf 99999--99999631587764899447
Q gi|254780505|r 112 EAIRI--ANEKICQLIHFPFDVVVLGM 136 (234)
Q Consensus 112 ~~~~~--~~~~~~~~~~~~~Dl~lLGi 136 (234)
+.++. |....+.....+++.+++|=
T Consensus 78 ~~aR~~Ry~~l~~~~~~~~~~~i~lgH 104 (185)
T cd01992 78 AAAREARYDFFAEIAKEHGADVLLTAH 104 (185)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 999999999999999873545042036
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=77.11 E-value=5.8 Score=19.70 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=37.5
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630795323899
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
+++.++.|-..+ +. +.++......+.-...+.||. ||-.+++.+....++.+++.++
T Consensus 79 LIl~PTrELa~Q-i~----~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~l 153 (417)
T PRK11192 79 LILTPTRELAMQ-VA----DQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETL 153 (417)
T ss_pred EEEECHHHHHHH-HH----HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEE
T ss_conf 999471999999-99----9999864005730599856878799999983699989978607777886367010457489
Q ss_pred ECCCC
Q ss_conf 81321
Q gi|254780505|r 68 LVDER 72 (234)
Q Consensus 68 ~~DER 72 (234)
-+||-
T Consensus 154 VlDEA 158 (417)
T PRK11192 154 ILDEA 158 (417)
T ss_pred EEECC
T ss_conf 99675
No 29
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=76.48 E-value=6 Score=19.60 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=39.6
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630795323899
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
+++.++.|-..| +.+. ++...+..+--..++.||. ||-.+++.+.+..++.+++.++
T Consensus 88 LIL~PTRELa~Q-i~~~----~~~l~~~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~l 162 (423)
T PRK04837 88 LIMAPTRELAVQ-IHAD----AEPLAQATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVV 162 (423)
T ss_pred EEEECCHHHHHH-HHHH----HHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEE
T ss_conf 999388999999-9999----99974325845999989988799999871799989989189999986422123664289
Q ss_pred ECCCC
Q ss_conf 81321
Q gi|254780505|r 68 LVDER 72 (234)
Q Consensus 68 ~~DER 72 (234)
-+||=
T Consensus 163 VlDEA 167 (423)
T PRK04837 163 VLDEA 167 (423)
T ss_pred EEECH
T ss_conf 96344
No 30
>PRK00876 nadE NAD synthetase; Reviewed
Probab=76.21 E-value=6.1 Score=19.55 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHH-HH--CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 9999999999999-72--8977999879864699998787630795323899813210
Q gi|254780505|r 19 LAKKVAEQLSIGI-TN--KGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERF 73 (234)
Q Consensus 19 ~a~~i~~~i~~~i-~~--~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~ 73 (234)
-++.+...|++-+ +. +.-++||||||-- -.+--.|+.+-+..+||.-..+-||.
T Consensus 15 e~~riv~fir~~v~~~~~~kG~VlGlSGGID-SAv~a~Lav~AlG~e~V~gl~MP~~~ 71 (325)
T PRK00876 15 EAERIRAFIREQVLGTLKRRGVVLGLSGGID-SSVTLALCVRALGKDRVLGLLMPERD 71 (325)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999999999851698679996876888-99999999997485516999788656
No 31
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=74.83 E-value=6.6 Score=19.33 Aligned_cols=50 Identities=30% Similarity=0.505 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9999999728977999879864699998787630795323899813210035
Q gi|254780505|r 25 EQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPL 76 (234)
Q Consensus 25 ~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~ 76 (234)
+.++..+++.+...|+.|||---. ++..++...+. .++..+.+|=-++|.
T Consensus 8 ~~l~~~ik~~~kv~vAfSGGvDSs-lLa~la~~~lG-~~v~AvTv~sP~~p~ 57 (269)
T COG1606 8 ERLKKAIKEKKKVVVAFSGGVDSS-LLAKLAKEALG-DNVVAVTVDSPYIPR 57 (269)
T ss_pred HHHHHHHHHCCEEEEEECCCCCHH-HHHHHHHHHHC-CCEEEEEEECCCCCH
T ss_conf 999999864373999965884279-99999999735-646999971687776
No 32
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=70.15 E-value=8.5 Score=18.66 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 9899999999999999999997289779998798646999987876307953238998132100
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFV 74 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V 74 (234)
+.++...+++..+.++++. ..-..++|+||||-- -.+--.|+.+-+.-++|.-..+..+.-
T Consensus 2 ~~~~~~~~lv~~l~~y~~~--~g~~~~viGlSGGID-Sav~a~La~~Alg~~~v~~v~mP~~~s 62 (248)
T cd00553 2 DLEEIINALVLFLRDYLRK--SGFKGVVLGLSGGID-SALVAALAVRALGRENVLALFMPSRYS 62 (248)
T ss_pred CHHHHHHHHHHHHHHHHHH--CCCCCEEEECCCCHH-HHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 6899999999999999998--199919995888899-999999999972887599988999789
No 33
>PRK00919 GMP synthase subunit B; Validated
Probab=69.96 E-value=8.6 Score=18.63 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 999999999972897799987986469999878763079532389981321003567320278899
Q gi|254780505|r 22 KVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFIS 87 (234)
Q Consensus 22 ~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~ 87 (234)
..++.|++.+. ++...++||||--- .+...|..+.+. .+++..++|-=+.-.+-.+.-...++
T Consensus 9 ~~i~~Ir~~Vg-~~kvi~~lSGGVDS-tV~A~Ll~kAig-~~l~~v~VD~GllR~~E~~~V~~~~~ 71 (306)
T PRK00919 9 EAIEEIREEVG-DGKAIIALSGGVDS-SVAAVLAHRAIG-DRLLAVYVDTGLMRKGETERIREIFK 71 (306)
T ss_pred HHHHHHHHHHC-CCCEEEEECCCCHH-HHHHHHHHHHHH-CCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99999999848-98599991688479-999999998864-26599998689887986999999998
No 34
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=68.30 E-value=9.4 Score=18.42 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=4.4
Q ss_pred HHHHHHHHHCC
Q ss_conf 99987876307
Q gi|254780505|r 49 FFLEELSIINV 59 (234)
Q Consensus 49 ~~y~~L~~~~~ 59 (234)
..++.|.+..+
T Consensus 69 ~~~~~l~~~~i 79 (268)
T cd01575 69 RTRQLLRAAGI 79 (268)
T ss_pred HHHHHHHHCCC
T ss_conf 99999997799
No 35
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=68.10 E-value=9.4 Score=18.40 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 6999987876307953238998132
Q gi|254780505|r 47 PRFFLEELSIINVDWHKVVVTLVDE 71 (234)
Q Consensus 47 p~~~y~~L~~~~~~w~kv~~~~~DE 71 (234)
|-.+++.+.+..++.+++.++-+||
T Consensus 127 Pgrl~~~l~~~~~~l~~l~~lVlDE 151 (203)
T cd00268 127 PGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred CHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 1899999984886513224899985
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=67.83 E-value=9.6 Score=18.36 Aligned_cols=62 Identities=27% Similarity=0.378 Sum_probs=39.9
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630795323899
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
|++.++.|-..| +++.+....+ ..++-..+++-||. ||-.+++.+.+..++.+++.++
T Consensus 78 LIL~PTRELA~Q-V~~~~~~l~~---~~~~i~v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~l 153 (629)
T PRK11634 78 LVLAPTRELAVQ-VAEAMTDFSK---HMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGL 153 (629)
T ss_pred EEECCCHHHHHH-HHHHHHHHHH---CCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEE
T ss_conf 997899899999-9999999972---179977999989977899999862799999969899999997296412007678
Q ss_pred ECCC
Q ss_conf 8132
Q gi|254780505|r 68 LVDE 71 (234)
Q Consensus 68 ~~DE 71 (234)
-+||
T Consensus 154 VLDE 157 (629)
T PRK11634 154 VLDE 157 (629)
T ss_pred EEEC
T ss_conf 9867
No 37
>pfam01171 ATP_bind_3 PP-loop family. This family of proteins belongs to the PP-loop superfamily.
Probab=67.31 E-value=9.8 Score=18.30 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=53.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC---CCCCCH
Q ss_conf 7799987986469999878763--07953238998132100356732027889997623567763214445---887898
Q gi|254780505|r 36 TASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY---YPQKTI 110 (234)
Q Consensus 36 ~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~---~~~~~~ 110 (234)
.+.|++|||.--..++..|.+. ...+ ++..+.+|..+=+ ++.. -...+++ +.....++....... ....+.
T Consensus 1 ki~vavSGG~DS~~Ll~~l~~~~~~~~~-~~~~~hvnh~lr~-~s~~-~~~~v~~-~~~~~~i~~~i~~~~~~~~~~~~~ 76 (182)
T pfam01171 1 KILVAVSGGPDSMALLYLLKKLKPKFGI-DLTAAHVDHGLRE-ESDR-EAQFVKE-LCRQLNIPLEVLRVDVAKKSGLNL 76 (182)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCC-CHHH-HHHHHHH-HHHHCCCCEEEEEEECCCCCCCCH
T ss_conf 9999967859999999999999997599-7899998799865-4058-9999999-999859975999973476678777
Q ss_pred HHHHH--HHHHHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 99999--99999963158776489944788771
Q gi|254780505|r 111 EEAIR--IANEKICQLIHFPFDVVVLGMGIDGH 141 (234)
Q Consensus 111 ~~~~~--~~~~~~~~~~~~~~Dl~lLGiG~DGH 141 (234)
++.++ +|..........+++.+++|==-|-.
T Consensus 77 e~~aR~~Ry~~l~~~a~~~~~~~i~lgHh~DD~ 109 (182)
T pfam01171 77 EEAAREARYDFFEEIAKKNGAEVLLTAHHADDQ 109 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf 578999999999998986176648874342329
No 38
>PRK09604 putative DNA-binding/iron metalloprotein/AP endonuclease; Reviewed
Probab=66.73 E-value=10 Score=18.23 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEECCCCCHHH
Q ss_conf 899999999999999999997289-----77999879864699
Q gi|254780505|r 12 KKRLAQKLAKKVAEQLSIGITNKG-----TASIALSGGLTPRF 49 (234)
Q Consensus 12 ~~~l~~~~a~~i~~~i~~~i~~~~-----~~~i~lsGGstp~~ 49 (234)
++..++.=.+.+...+++++++.+ --.|++|.|.-..+
T Consensus 44 Pe~Asr~H~~~i~~lv~~al~~a~i~~~~id~IAvT~gPGL~g 86 (335)
T PRK09604 44 PELASRHHVEALPPLLEEALKEAGLSLEDIDAIAVTAGPGLVG 86 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCH
T ss_conf 0999999999999999999986599987897899947999611
No 39
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=66.24 E-value=10 Score=18.17 Aligned_cols=111 Identities=15% Similarity=0.059 Sum_probs=56.7
Q ss_pred HHHHHHHHHC----CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 9999999728----977999879864699998787630795323899813210035673202788999762356776321
Q gi|254780505|r 25 EQLSIGITNK----GTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASF 100 (234)
Q Consensus 25 ~~i~~~i~~~----~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~ 100 (234)
..+...+... ..+.||+|||.--..++..|.+..-. -++..+.+|+.+-+.. ... ...-+.+-.....+...
T Consensus 8 ~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~-~~~~a~~Vd~~~~~~~-~~~--~~~~~~~~~~~~~~~~v 83 (298)
T COG0037 8 RKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR-IEVEAVHVDHGLRGYS-DQE--AELVEKLCEKLGIPLIV 83 (298)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCC-HHH--HHHHHHHHHHCCCCEEE
T ss_conf 9999999872566785899937878999999999984225-7389999708988643-289--99999999964998488
Q ss_pred EECCCC-------CCCHHHHHHHHHH--HHHHHCCCCCCEEEECCCCC
Q ss_conf 444588-------7898999999999--99631587764899447887
Q gi|254780505|r 101 IPLYYP-------QKTIEEAIRIANE--KICQLIHFPFDVVVLGMGID 139 (234)
Q Consensus 101 ~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~Dl~lLGiG~D 139 (234)
...... ..++...|+.... ........++|.+++|---|
T Consensus 84 ~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 84 ERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred EEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 620454310024676787999999999999999985999898567846
No 40
>pfam07005 DUF1537 Protein of unknown function, DUF1537. This conserved region is found in proteins of unknown function in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis.
Probab=65.88 E-value=10 Score=18.12 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=14.0
Q ss_pred CCEEEEEEECHHHHHHHHHHHC
Q ss_conf 5829999818348999999980
Q gi|254780505|r 187 AQFLALHIEGTQKKHVLEKAIS 208 (234)
Q Consensus 187 a~~i~ll~~G~~K~~al~~~l~ 208 (234)
..---|+++|-+=+.++-+.+.
T Consensus 195 ~~~~~li~tGGDTs~av~~~Lg 216 (224)
T pfam07005 195 AGVRRLIVAGGDTSGAVLQALG 216 (224)
T ss_pred CCCCEEEEECCHHHHHHHHHCC
T ss_conf 5988799907788999999749
No 41
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=64.97 E-value=11 Score=18.02 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=35.5
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-------------------CHHHHHHHHHHHCCCCCCEE
Q ss_conf 89994898999999999999999999972897799987986-------------------46999987876307953238
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL-------------------TPRFFLEELSIINVDWHKVV 65 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs-------------------tp~~~y~~L~~~~~~w~kv~ 65 (234)
-+++.+++|-..+ +. +.++...+..+--...+.||. ||-.+++.+.+..+..+++.
T Consensus 162 aLIL~PTRELa~Q-I~----~~~~~L~~~~~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~ 236 (472)
T PRK01297 162 ALIIAPTRELVVQ-IA----KDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 236 (472)
T ss_pred EEEECCCHHHHHH-HH----HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCE
T ss_conf 9998799999999-99----999997462797699997898879999998558998899797999987434825425522
Q ss_pred EEECCCC
Q ss_conf 9981321
Q gi|254780505|r 66 VTLVDER 72 (234)
Q Consensus 66 ~~~~DER 72 (234)
++-+||-
T Consensus 237 ~lVlDEA 243 (472)
T PRK01297 237 VMVLDEA 243 (472)
T ss_pred EEEEECH
T ss_conf 9999873
No 42
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=63.52 E-value=12 Score=17.85 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=41.1
Q ss_pred CEEEEECCCC-CHH----H-HHHHHHHHCCC-CCCEEEEECCCCCC---------------CCCCCCC-HHHHHHHHHHC
Q ss_conf 7799987986-469----9-99878763079-53238998132100---------------3567320-27889997623
Q gi|254780505|r 36 TASIALSGGL-TPR----F-FLEELSIINVD-WHKVVVTLVDERFV---------------PLENLRS-NQSFISKFFLQ 92 (234)
Q Consensus 36 ~~~i~lsGGs-tp~----~-~y~~L~~~~~~-w~kv~~~~~DER~V---------------~~~~~~S-n~~~~~~~ll~ 92 (234)
...||++||| |.+ . +++.+.+.--. ..++.+..-|-||= ..|||++ +..++.+||.+
T Consensus 10 c~iigI~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~Ll~~Hl~n 89 (220)
T TIGR00235 10 CIIIGISGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDLLYEHLKN 89 (220)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHHHHHHHHH
T ss_conf 17997017661015678999999999983140014577503244588988731246431258898003037999999999
Q ss_pred CCCCCCCEEECC
Q ss_conf 567763214445
Q gi|254780505|r 93 NKAQKASFIPLY 104 (234)
Q Consensus 93 ~~~~~~~~~~~~ 104 (234)
...-....+|++
T Consensus 90 Lk~g~~~~~P~Y 101 (220)
T TIGR00235 90 LKNGSAIDVPVY 101 (220)
T ss_pred HHCCCEECCCCC
T ss_conf 846880224542
No 43
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=61.63 E-value=13 Score=17.64 Aligned_cols=168 Identities=15% Similarity=0.236 Sum_probs=75.0
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 89994898999999999999999999972897799987986------------------469999878763079532389
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVV 66 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~ 66 (234)
-+++.++.|- +..+.+.+. ...+.-+--..++.||. ||-.+++.+.+..++.+++.+
T Consensus 78 aLIL~PTREL-A~Qi~~~~~----~l~~~~~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~ 152 (457)
T PRK10590 78 ALILTPTREL-AAQIGENVR----DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (457)
T ss_pred EEEECCHHHH-HHHHHHHHH----HHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEE
T ss_conf 9997687999-999999999----74255894599997997775999986189998998928889888626776575239
Q ss_pred EECCCC--CCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEE
Q ss_conf 981321--003567320278899976235677632144458878989999999999963158776489944788771434
Q gi|254780505|r 67 TLVDER--FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTAS 144 (234)
Q Consensus 67 ~~~DER--~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~AS 144 (234)
+-+||= ++.. ++...+++.+ ...+..... -+ ..+.-+.+ +....+.+ ...|..+ -++......
T Consensus 153 lVlDEAD~mLd~----gF~~di~~Il-~~lp~~rQ~-ll-fSAT~~~~-v~~l~~~~---l~~p~~i---~v~~~~~~~- 217 (457)
T PRK10590 153 LVLDEADRMLDM----GFIHDIRRVL-AKLPAKRQN-LL-FSATFSDD-IKALAEKL---LHNPLEI---EVARRNTAS- 217 (457)
T ss_pred EEEECCHHHHCC----CCHHHHHHHH-HHCCCCCEE-EE-EECCCCHH-HHHHHHHH---CCCCEEE---EECCCCCCC-
T ss_conf 998370565156----6536689998-638765268-99-95048889-99999997---6898899---963676656-
Q ss_pred ECCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHH---CCCEEEEEEECHHHHHHHHHHHCCC
Q ss_conf 02786410022156674318995389987215870878884---1582999981834899999998089
Q gi|254780505|r 145 FFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALH---DAQFLALHIEGTQKKHVLEKAISGD 210 (234)
Q Consensus 145 lFP~~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~---~a~~i~ll~~G~~K~~al~~~l~~~ 210 (234)
+. -.+.+..++...+. .+ +..+. +.+.+++++.-.+.++.+.+.|...
T Consensus 218 -----~~--------i~q~~~~v~~~~k~----~~-L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~ 268 (457)
T PRK10590 218 -----EQ--------VTQHVHFVDKKRKR----EL-LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD 268 (457)
T ss_pred -----CC--------EEEEEEEECHHHHH----HH-HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHC
T ss_conf -----13--------04899995667899----99-999986158663358841199999999998556
No 44
>pfam00012 HSP70 Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.
Probab=61.41 E-value=13 Score=17.62 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf 89899999999999999999997289-----779998798646999987876307953238998132100356
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKG-----TASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLE 77 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~-----~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~ 77 (234)
+..+++.+.+.+.+...++++++.-+ --.+.|.||+|-.++.+.+.+..+.-+-..-.+-|| .|...
T Consensus 295 ~eFE~l~~~l~~r~~~~i~~~L~~a~l~~~dId~ViLvGGssRiP~Vq~~l~~~fg~~~~~~inpde-aVa~G 366 (598)
T pfam00012 295 AKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTVNPDE-AVAIG 366 (598)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCH-HHHHH
T ss_conf 9999999999999999998789872899545125786188656768999999986899666868531-42330
No 45
>PRK08233 hypothetical protein; Provisional
Probab=60.75 E-value=13 Score=17.55 Aligned_cols=41 Identities=20% Similarity=0.055 Sum_probs=25.1
Q ss_pred CCCEEEEECCCC-CHHHHH-HHHHHHCCCCCCEEEEECCCCCCCCC
Q ss_conf 897799987986-469999-87876307953238998132100356
Q gi|254780505|r 34 KGTASIALSGGL-TPRFFL-EELSIINVDWHKVVVTLVDERFVPLE 77 (234)
Q Consensus 34 ~~~~~i~lsGGs-tp~~~y-~~L~~~~~~w~kv~~~~~DER~V~~~ 77 (234)
|..+.||+|||+ |.+..+ +.|.+ .+++.. ++..|.+..+..
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~-~l~~~~--~~~~D~y~~~~~ 43 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTH-KLKNSK--ALYFDRYDFDNC 43 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-HCCCCE--EEEECCCCCCCC
T ss_conf 9988999968886789999999999-746775--899666555468
No 46
>PRK13410 molecular chaperone DnaK; Provisional
Probab=60.62 E-value=13 Score=17.53 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=9.2
Q ss_pred EEECCCCCHHHHHHHHHHHC
Q ss_conf 99879864699998787630
Q gi|254780505|r 39 IALSGGLTPRFFLEELSIIN 58 (234)
Q Consensus 39 i~lsGGstp~~~y~~L~~~~ 58 (234)
|+|-||+|=.+..+.+.+..
T Consensus 332 VILVGGSTRIP~Vq~~V~e~ 351 (719)
T PRK13410 332 VVLVGGSTRMPMVKQLVRSL 351 (719)
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99978825548899999998
No 47
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=59.94 E-value=13 Score=17.46 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 898999999999999999999972897799987986469999878763
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII 57 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~ 57 (234)
++.++|-+.+|+..++++ +..-.|+|=+|||-..+.+.|++.
T Consensus 2 ~~~~~lK~~aa~~A~~~V------~~gmviGLGTGSTv~~~I~~L~~~ 43 (228)
T PRK13978 2 KDVKALKLMTLNDVLSQI------NGDMTLGIGTGSTMELLLPQMAQL 43 (228)
T ss_pred CCHHHHHHHHHHHHHHHC------CCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 868999999999999658------999999855579999999999999
No 48
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=59.10 E-value=14 Score=17.37 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=38.5
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630795323899
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
+++.+++|-..| +++.+....+. ..+--...+.||. ||-.+.+.+.+..++.+++.++
T Consensus 76 LIL~PTRELa~Q-V~~~~~~l~~~---~~~ikv~~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~l 151 (459)
T PRK11776 76 LVLCPTRELADQ-VAKEIRRLARF---IPNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTL 151 (459)
T ss_pred EEEECHHHHHHH-HHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEE
T ss_conf 999675999999-99999999850---58825999989932799999974699999989589998875166322310389
Q ss_pred ECCCC
Q ss_conf 81321
Q gi|254780505|r 68 LVDER 72 (234)
Q Consensus 68 ~~DER 72 (234)
-+||-
T Consensus 152 VlDEA 156 (459)
T PRK11776 152 VLDEA 156 (459)
T ss_pred EEECC
T ss_conf 97062
No 49
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=58.71 E-value=14 Score=17.33 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=7.1
Q ss_pred CCCCCCEEEEECCCCCC
Q ss_conf 07953238998132100
Q gi|254780505|r 58 NVDWHKVVVTLVDERFV 74 (234)
Q Consensus 58 ~~~w~kv~~~~~DER~V 74 (234)
...++|+. +-.-..||
T Consensus 338 ~~~F~~i~-~~~~~~~~ 353 (566)
T TIGR02477 338 VEEFSKIK-FEGRKDLV 353 (566)
T ss_pred CCHHCCCC-HHHHHHHH
T ss_conf 62001467-78899999
No 50
>PTZ00110 helicase; Provisional
Probab=58.18 E-value=14 Score=17.27 Aligned_cols=172 Identities=15% Similarity=0.187 Sum_probs=82.0
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630795323899
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
++..+++|-..| +. +.+...-+..+--+.++-||. ||-.+.+.|.+..++.++++++
T Consensus 259 LILaPTRELA~Q-I~----~e~~~~~~~~~ir~~~i~GG~~~~~Q~~~L~~G~dIvVATPGRLiDlL~~~~~~L~~v~yL 333 (602)
T PTZ00110 259 LVLAPTRELAEQ-IR----EQALQFGRSSKLKNSVAYGGVPKRFQTYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 333 (602)
T ss_pred EEECCHHHHHHH-HH----HHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCEEEE
T ss_conf 997383999999-99----9999971547854999979968799999871699999979238999996499874310289
Q ss_pred ECCCC--CCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEE
Q ss_conf 81321--0035673202788999762356776321444588789899999999999631587764899447887714340
Q gi|254780505|r 68 LVDER--FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASF 145 (234)
Q Consensus 68 ~~DER--~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASl 145 (234)
-+||= .+.. .+...+++.+- ... +..+.-++ .+.-+++ ++...+.+.. ..| +.+-+|.-.-.+
T Consensus 334 VLDEADRMLDm----GFe~qI~~Il~-~i~-pdRQTlLF-SAT~p~~-V~~LA~~~L~--~~P---v~I~Vg~~~~~a-- 398 (602)
T PTZ00110 334 VLDEADRMLDM----GFEPQIRKIVS-QIR-PDRQTLMW-SATWPKE-VQSLARDLCK--EEP---VHVNVGSLDLTT-- 398 (602)
T ss_pred EEECHHHHHCC----CCHHHHHHHHH-HCC-CCCEEEEE-ECCCCHH-HHHHHHHHHC--CCC---EEEEECCCCCCC--
T ss_conf 98757766354----62999999998-589-78779999-5589989-9999999820--698---899936888777--
Q ss_pred CCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCC
Q ss_conf 2786410022156674318995389987215870878884158299998183489999999808
Q gi|254780505|r 146 FPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209 (234)
Q Consensus 146 FP~~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~ 209 (234)
. +. -.+.+..+....+ ..++-.-+..+....++++++.-+..++.+.+.|..
T Consensus 399 --~-~~--------I~Q~v~vv~~~eK-~~~L~~lL~~~~~~~kvIIFvnTK~~ad~L~~~L~~ 450 (602)
T PTZ00110 399 --C-HN--------IKQEVFVIEEHEK-RAKLKELLGQIMDGGKILIFSETKKGADTLTKELRL 450 (602)
T ss_pred --C-CC--------CEEEEEEECHHHH-HHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf --7-87--------0589999651889-999999998527899689992973899999999986
No 51
>pfam00455 DeoR Bacterial regulatory proteins, deoR family.
Probab=57.46 E-value=15 Score=17.20 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 89779998798646999987876307953238998
Q gi|254780505|r 34 KGTASIALSGGLTPRFFLEELSIINVDWHKVVVTL 68 (234)
Q Consensus 34 ~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~ 68 (234)
++.-.|.|-+|+|...+.+.|... .+++++-
T Consensus 16 ~~g~~Ifld~GTT~~~la~~L~~~----~~ltVvT 46 (157)
T pfam00455 16 EDGDTIFLDAGTTVEELARALLGH----INLTVIT 46 (157)
T ss_pred CCCCEEEECCCHHHHHHHHHHHCC----CCEEEEE
T ss_conf 999999990968999999998538----9879998
No 52
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=54.55 E-value=17 Score=16.90 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=19.7
Q ss_pred EEECCCC-CHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 9987986-4699998787630795323899813210
Q gi|254780505|r 39 IALSGGL-TPRFFLEELSIINVDWHKVVVTLVDERF 73 (234)
Q Consensus 39 i~lsGGs-tp~~~y~~L~~~~~~w~kv~~~~~DER~ 73 (234)
||++||| +.+..+..-....+.-.++.+.-.|-|+
T Consensus 2 IgVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yh 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 899788878699999999998584876999657778
No 53
>TIGR01887 dipeptidaselike dipeptidase, putative; InterPro: IPR010964 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This entry represents bacterial zinc dipeptidases or probably dipeptidases, belonging to the MEROPS peptidase family M20 (clan MH), subfamily M20A. Many of the members are incorrectly annotated as 'Xaa-His' and 'carnosinase' due to the early miss-characterisation of the Lactobacillus delbrueckii PepV enzyme. The entry includes unassigned peptidases and non-peptidase homologues. ; GO: 0008270 zinc ion binding, 0016805 dipeptidase activity.
Probab=54.04 E-value=16 Score=17.01 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCCHHHHH--HHHHHHCCCCC-CEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86469999--87876307953-23899813210035673202788999762
Q gi|254780505|r 44 GLTPRFFL--EELSIINVDWH-KVVVTLVDERFVPLENLRSNQSFISKFFL 91 (234)
Q Consensus 44 Gstp~~~y--~~L~~~~~~w~-kv~~~~~DER~V~~~~~~Sn~~~~~~~ll 91 (234)
|.|-.++| +.|.+..++|+ ||+|.++ +|++|++.=+..+|-
T Consensus 118 GP~~AalYA~K~l~elG~~~kKkiR~I~G-------TDEEsgw~c~~yYf~ 161 (492)
T TIGR01887 118 GPTIAALYAMKILKELGLKLKKKIRFIFG-------TDEESGWKCIDYYFE 161 (492)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEE-------CCCCCCCCCHHHHHH
T ss_conf 27899999999999658796667999983-------465658700787776
No 54
>PRK11678 putative chaperone; Provisional
Probab=53.25 E-value=17 Score=16.78 Aligned_cols=15 Identities=27% Similarity=0.029 Sum_probs=11.5
Q ss_pred CCCCCEEEECCCCCC
Q ss_conf 877648994478877
Q gi|254780505|r 126 HFPFDVVVLGMGIDG 140 (234)
Q Consensus 126 ~~~~Dl~lLGiG~DG 140 (234)
++.||+.++-+|++.
T Consensus 218 GGT~DvSlv~~~~~~ 232 (450)
T PRK11678 218 GGTTDCSLLLMGPSW 232 (450)
T ss_pred CCEEEEEEEEECCCC
T ss_conf 984888747854871
No 55
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=51.80 E-value=18 Score=16.63 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=29.9
Q ss_pred CCCCEEE-EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHH
Q ss_conf 9872899-9489899999999999999999997289779998798-6469999878
Q gi|254780505|r 1 MLQYKLY-VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGG-LTPRFFLEEL 54 (234)
Q Consensus 1 M~~~~i~-i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGG-stp~~~y~~L 54 (234)
||.-|++ -.++.+++++.+|+.|.+. .+....+|++-| -.|..++...
T Consensus 3 ~m~kK~~iSW~ei~~~~~~LA~kI~~~------~~~d~IV~IaRGGliPA~~ls~~ 52 (156)
T PRK09177 3 LMSKKFPVSWDQLHRDARALAWRLLPA------GQWKGIIAVTRGGLVPAAILARE 52 (156)
T ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHHC------CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 766770254999999999999999850------89866999914783159999998
No 56
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=51.36 E-value=19 Score=16.59 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=25.9
Q ss_pred EEEECCCC-CHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
Q ss_conf 99987986-469999878763079532389981321003567
Q gi|254780505|r 38 SIALSGGL-TPRFFLEELSIINVDWHKVVVTLVDERFVPLEN 78 (234)
Q Consensus 38 ~i~lsGGs-tp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~ 78 (234)
.||++||| |.+..+.......++ ++.+...|.++-|.++
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l~--~~~iI~qDdyYk~~~~ 40 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDE 40 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CCEEECCCCCCCCCCC
T ss_conf 989968888759999999999879--9889715446788432
No 57
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; InterPro: IPR005966 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as) 1-aminocyclopropane-1-carboxylate deaminase. However, the members of this family are less well conserved.; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding.
Probab=50.75 E-value=19 Score=16.53 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCEEEECCC
Q ss_conf 999999999996315-87764899447887714340278
Q gi|254780505|r 111 EEAIRIANEKICQLI-HFPFDVVVLGMGIDGHTASFFPK 148 (234)
Q Consensus 111 ~~~~~~~~~~~~~~~-~~~~Dl~lLGiG~DGH~ASlFP~ 148 (234)
-+++.+.+++++--. ...||=++.-.|+=|=+|.|=-|
T Consensus 163 v~A~~Ei~~QLN~~~d~vkfd~iVvA~GSGGT~AGLS~G 201 (339)
T TIGR01275 163 VEAVLEIAEQLNLESDEVKFDSIVVAAGSGGTIAGLSLG 201 (339)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 999999998607886642015268961762678999998
No 58
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=49.15 E-value=20 Score=16.38 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=22.4
Q ss_pred EEEECCCC-CHHHHHHH-HHHH-CCCCCCEEEEECCCCCCCC
Q ss_conf 99987986-46999987-8763-0795323899813210035
Q gi|254780505|r 38 SIALSGGL-TPRFFLEE-LSII-NVDWHKVVVTLVDERFVPL 76 (234)
Q Consensus 38 ~i~lsGGs-tp~~~y~~-L~~~-~~~w~kv~~~~~DER~V~~ 76 (234)
.||++||| +.+..+.. |.+. ...-.++.++-.|.|+.+.
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~vis~D~yy~~~ 42 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 989989897789999999999984648853999546664576
No 59
>PRK07667 uridine kinase; Provisional
Probab=49.07 E-value=20 Score=16.37 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=28.1
Q ss_pred HHCCCEEEEECCCC-CHHHHH-HHHHHHCC-CCCCEEEEECCCCCCCCC
Q ss_conf 72897799987986-469999-87876307-953238998132100356
Q gi|254780505|r 32 TNKGTASIALSGGL-TPRFFL-EELSIINV-DWHKVVVTLVDERFVPLE 77 (234)
Q Consensus 32 ~~~~~~~i~lsGGs-tp~~~y-~~L~~~~~-~w~kv~~~~~DER~V~~~ 77 (234)
.+.+++.||++||+ |.+..+ +.|.+.-- .--.+.++..|.++.+.+
T Consensus 10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~~~~~~ 58 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDHIVERN 58 (190)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 7598699997798978899999999999866598379996662426588
No 60
>KOG0331 consensus
Probab=47.95 E-value=21 Score=16.26 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=44.8
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630795323899
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIINVDWHKVVVT 67 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~~~w~kv~~~ 67 (234)
+...+++|. +..+.+.+.+. -..-+--+.++.||. ||-.+++.|-...++.+++++.
T Consensus 169 LVL~PTREL-A~QV~~~~~~~----~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~yl 243 (519)
T KOG0331 169 LVLAPTREL-AVQVQAEAREF----GKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYL 243 (519)
T ss_pred EEECCCHHH-HHHHHHHHHHH----CCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEE
T ss_conf 997685999-99999999997----0777740799868988637889875598189807717899997488564530399
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 813210035673202788999762
Q gi|254780505|r 68 LVDERFVPLENLRSNQSFISKFFL 91 (234)
Q Consensus 68 ~~DER~V~~~~~~Sn~~~~~~~ll 91 (234)
-+||==-=. +. -++..+++.+-
T Consensus 244 VLDEADrMl-dm-GFe~qI~~Il~ 265 (519)
T KOG0331 244 VLDEADRML-DM-GFEPQIRKILS 265 (519)
T ss_pred EECCHHHHH-CC-CCHHHHHHHHH
T ss_conf 963477663-13-53799999987
No 61
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=47.60 E-value=21 Score=16.23 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEECCCC
Q ss_conf 899999999999999999997289-----7799987986
Q gi|254780505|r 12 KKRLAQKLAKKVAEQLSIGITNKG-----TASIALSGGL 45 (234)
Q Consensus 12 ~~~l~~~~a~~i~~~i~~~i~~~~-----~~~i~lsGGs 45 (234)
+|..++.=.+.+...+++++++-+ --.|+.+-|.
T Consensus 49 Pe~Asr~H~~~i~~lv~~aL~~a~i~~~did~IAvT~gP 87 (348)
T PTZ00340 49 PRETAQHHRQHILSLVQEALEEAGITLSDISLICYTKGP 87 (348)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCEEEECCCC
T ss_conf 299999999999999999999859984118579972799
No 62
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=45.95 E-value=23 Score=16.07 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 999999999999999728977999879864699998787630795323
Q gi|254780505|r 17 QKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKV 64 (234)
Q Consensus 17 ~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv 64 (234)
+.+|+++ +.++ +|...+..++|++||+|-..-.+.+.+-++|-.+|
T Consensus 16 ~gLA~f~-~~L~-si~~~~~~gfGi~TGR~v~~A~~~~~k~~lP~Pdv 61 (241)
T TIGR02471 16 EGLAEFV-ELLR-SITSGKAVGFGIATGRSVESALSVLKKLNLPSPDV 61 (241)
T ss_pred HHHHHHH-HHHH-HHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH
T ss_conf 7899999-9998-86505430232013547789999999707978602
No 63
>COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation]
Probab=45.72 E-value=20 Score=16.39 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=10.1
Q ss_pred CCEEEECCCCC-CCEEE
Q ss_conf 64899447887-71434
Q gi|254780505|r 129 FDVVVLGMGID-GHTAS 144 (234)
Q Consensus 129 ~Dl~lLGiG~D-GH~AS 144 (234)
-||++||+-.- -|++-
T Consensus 220 ADLImLGLstH~PHF~i 236 (953)
T COG5049 220 ADLIMLGLSTHEPHFLI 236 (953)
T ss_pred CCCEEEECCCCCCEEEE
T ss_conf 33101321247872588
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=45.69 E-value=23 Score=16.05 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=8.1
Q ss_pred CCEEEEEEECHHHHHHHHHHHC
Q ss_conf 5829999818348999999980
Q gi|254780505|r 187 AQFLALHIEGTQKKHVLEKAIS 208 (234)
Q Consensus 187 a~~i~ll~~G~~K~~al~~~l~ 208 (234)
||-..+.+.=-....+.+-+.+
T Consensus 170 SRCq~~~f~~l~~~~~~~~L~~ 191 (216)
T TIGR00678 170 SRCQVLPFPPLSEEALLQWLIE 191 (216)
T ss_pred CCEEEEEECCCCHHHHHHHHHH
T ss_conf 3201586259988999999997
No 65
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=44.33 E-value=16 Score=17.06 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.2
Q ss_pred EECCCCCHHHHHHHHHH---HCCCCC
Q ss_conf 98798646999987876---307953
Q gi|254780505|r 40 ALSGGLTPRFFLEELSI---INVDWH 62 (234)
Q Consensus 40 ~lsGGstp~~~y~~L~~---~~~~w~ 62 (234)
+||-++||..+|++|.. ++-||+
T Consensus 51 ~LSn~tTPpeVYQaLWg~la~qkPW~ 76 (496)
T TIGR02938 51 VLSNRTTPPEVYQALWGSLAEQKPWA 76 (496)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 12685887179999998863058986
No 66
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=44.11 E-value=24 Score=15.90 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHC-CC
Q ss_conf 728977999879864699998787630-79
Q gi|254780505|r 32 TNKGTASIALSGGLTPRFFLEELSIIN-VD 60 (234)
Q Consensus 32 ~~~~~~~i~lsGGstp~~~y~~L~~~~-~~ 60 (234)
.+|...+|+=.||+||..+-+.|.+.. .+
T Consensus 646 ~E~~~GVIVq~GGQtp~nlA~~L~~~GG~~ 675 (1089)
T TIGR01369 646 LEKPEGVIVQFGGQTPLNLAKELEEAGGVP 675 (1089)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHHCCCCE
T ss_conf 058667999748732678999999708931
No 67
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=43.78 E-value=24 Score=15.87 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=22.8
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC--CCEEEEECCCCC
Q ss_conf 9999728977999879864699998787630795--323899813210
Q gi|254780505|r 28 SIGITNKGTASIALSGGLTPRFFLEELSIINVDW--HKVVVTLVDERF 73 (234)
Q Consensus 28 ~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w--~kv~~~~~DER~ 73 (234)
.+.+.++.++.+|+|||.--..++..|.+..-.+ -+++..++|-.+
T Consensus 7 ~~~~~~~~~ilvavSGG~DS~~LL~~L~~l~~~~~~~~l~~~HvnHgl 54 (433)
T PRK10660 7 NRQLLESRQILVAFSGGLDSTVLLHQLVQWRTQNPGVTLRAIHIHHGL 54 (433)
T ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 664699998999972809999999999999986689828999971897
No 68
>PRK06031 phosphoribosyltransferase; Provisional
Probab=43.76 E-value=24 Score=15.87 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHH-HCCCCCCE-EEEECCCCCCCCCCCCC-HHHHHHHH
Q ss_conf 999999999999999997289779998798646999--987876-30795323-89981321003567320-27889997
Q gi|254780505|r 15 LAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFF--LEELSI-INVDWHKV-VVTLVDERFVPLENLRS-NQSFISKF 89 (234)
Q Consensus 15 l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~--y~~L~~-~~~~w~kv-~~~~~DER~V~~~~~~S-n~~~~~~~ 89 (234)
+..++|+++++.++ .-++...+++++...+... -++|.. +.++|.+- .||..||--+|..+-.| ... ++.
T Consensus 68 V~daLA~~lA~k~~---~~~pdvv~GlpTLGl~lA~~Var~LG~~rYVplg~SrKfwy~d~Ls~~vsSITtp~~~--krl 142 (233)
T PRK06031 68 VLDALAEELAAKAR---PFRPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYDDELSVPLSSITTPDQG--KRL 142 (233)
T ss_pred HHHHHHHHHHHHHH---CCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCEECCCCCCCC--CEE
T ss_conf 99999999998741---5698678714655404589999970976367656477533134435510003588877--315
Q ss_pred HHCCCCC---CCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 6235677---63214445887898999999999996315877648994478
Q gi|254780505|r 90 FLQNKAQ---KASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMG 137 (234)
Q Consensus 90 ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG 137 (234)
+++.... .-+.+-++++..+-.......-+.+.. .+++++-.|+.
T Consensus 143 ylDp~~lpLl~GrRV~lVDDVISSG~Si~a~l~LL~~---~G~e~v~igva 190 (233)
T PRK06031 143 YIDPRMLPLLRGRRVALIDDVISSGASIVAALRLLAT---CGIEPAGIGAA 190 (233)
T ss_pred EECHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHH---CCCCEEEEEEE
T ss_conf 6774441243287799982122155659999999997---59973788763
No 69
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=43.48 E-value=25 Score=15.84 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC-
Q ss_conf 9999999999999728977999879864699998787630795323899813210035673202788999762356776-
Q gi|254780505|r 19 LAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQK- 97 (234)
Q Consensus 19 ~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~- 97 (234)
..+.....+++.+. .+.+-++||||--.. +...|..+.+ -++++..++|-.+...+-.+. +++.|-.+...+
T Consensus 7 ~ie~~i~~ir~~vg-~~kvi~alSGGVDSs-v~a~L~~~Ai-Gd~l~cvfVD~GLlR~~E~e~----V~~~f~~~~~~nl 79 (315)
T COG0519 7 FIEEAIEEIREQVG-DGKVILALSGGVDSS-VAAVLAHRAI-GDQLTCVFVDHGLLRKGEAEQ----VVEMFREHLGLNL 79 (315)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCCHH-HHHHHHHHHH-HCCEEEEEECCCCCCCCCHHH----HHHHHHHHCCCCE
T ss_conf 89999999999728-853999833878089-9999999974-052489996377434785699----9999875329845
Q ss_pred ------CCEEECCCCCCCHHHHHHHHH
Q ss_conf ------321444588789899999999
Q gi|254780505|r 98 ------ASFIPLYYPQKTIEEAIRIAN 118 (234)
Q Consensus 98 ------~~~~~~~~~~~~~~~~~~~~~ 118 (234)
..|+....+-.+|++--+...
T Consensus 80 ~~VdA~~~Fl~~L~GvtDPE~KRKiIG 106 (315)
T COG0519 80 IVVDAKDRFLSALKGVTDPEEKRKIIG 106 (315)
T ss_pred EEECHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 997549889988439998899899987
No 70
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=42.57 E-value=25 Score=15.75 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=53.7
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCH------------------HHHHHHHHHHCCCCCCEE
Q ss_conf 899948989999999999999999999728-9779998798646------------------999987876307953238
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNK-GTASIALSGGLTP------------------RFFLEELSIINVDWHKVV 65 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~-~~~~i~lsGGstp------------------~~~y~~L~~~~~~w~kv~ 65 (234)
-+++.+++ |++.++++.+.... +.. +--.+.+.||.+. -.+.+.+....++.+++.
T Consensus 102 aLil~PTR-ELA~Qi~~~~~~~~----~~~~~~~~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 102 ALILAPTR-ELAVQIAEELRKLG----KNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred EEEECCCH-HHHHHHHHHHHHHH----HHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCEE
T ss_conf 69977999-99999999999998----62458429999899898999998724998999796089999864885546501
Q ss_pred EEECCCC--CCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 9981321--00356732027889997623567763214445887898999999999996
Q gi|254780505|r 66 VTLVDER--FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKIC 122 (234)
Q Consensus 66 ~~~~DER--~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (234)
++.+||= .... .+...+.+.+- ..+. ..+.-++ .+.-++ ..+.....+.
T Consensus 177 ~lVlDEADrmld~----gf~~~i~~I~~-~~p~-~~qtllf-SAT~~~-~i~~l~~~~l 227 (513)
T COG0513 177 TLVLDEADRMLDM----GFIDDIEKILK-ALPP-DRQTLLF-SATMPD-DIRELARRYL 227 (513)
T ss_pred EEEECCHHHHCCC----CCHHHHHHHHH-HCCC-CCEEEEE-EECCCH-HHHHHHHHHC
T ss_conf 8996761766388----76899999997-3897-7489999-824898-9999999973
No 71
>PRK13980 NAD synthetase; Provisional
Probab=42.04 E-value=26 Score=15.70 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999999999999972897799987986469999878763079532389981321003567320278899976
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF 90 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l 90 (234)
|.+.+.+.+.+.+-+.++++ .-..++|+||||=- -.+--.|+.+-+.-++|+-..+=.+.-+..+. .....+-+.|
T Consensus 7 d~~~~~~~iv~~lrdy~~~~--g~kg~VlGlSGGID-Savva~La~~Alg~~~v~~v~mP~~~ss~~s~-~dA~~la~~l 82 (264)
T PRK13980 7 DYEKVREIIVDFIREEVEKA--GFKGVVLGLSGGID-SAVVAYLAVKALGKENVLALLMPYRVSPPEDL-EDALLVAERL 82 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHH--CCCEEEEECCCCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH-HHHHHHHHHH
T ss_conf 89999999999999999980--99809997986888-99999999985496606899898999988789-9999999986
No 72
>KOG3636 consensus
Probab=41.18 E-value=12 Score=17.85 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 69999878763079532389981321
Q gi|254780505|r 47 PRFFLEELSIINVDWHKVVVTLVDER 72 (234)
Q Consensus 47 p~~~y~~L~~~~~~w~kv~~~~~DER 72 (234)
|+.+|+.+....+...-|+||.+|=|
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcR 333 (669)
T KOG3636 308 PISVIELTSHDEISSGSVRFFIVDCR 333 (669)
T ss_pred CHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 50388763144234684579998356
No 73
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=40.32 E-value=28 Score=15.54 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=7.5
Q ss_pred EEECCCCCHHHHHHHHHHH
Q ss_conf 9987986469999878763
Q gi|254780505|r 39 IALSGGLTPRFFLEELSII 57 (234)
Q Consensus 39 i~lsGGstp~~~y~~L~~~ 57 (234)
|.|-||+|-.+..+.+.+.
T Consensus 332 ViLVGGsTRiP~Vq~~v~~ 350 (631)
T PRK00290 332 VILVGGSTRMPAVQELVKE 350 (631)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9991782456799999999
No 74
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=40.13 E-value=28 Score=15.52 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 99999999999999997289779998798646
Q gi|254780505|r 16 AQKLAKKVAEQLSIGITNKGTASIALSGGLTP 47 (234)
Q Consensus 16 ~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp 47 (234)
.+++.+.+.+..+.+++..+.-.++++||-.-
T Consensus 227 Qe~i~~~L~e~t~rAl~~~~~~~lvv~GGVaa 258 (536)
T PRK09605 227 QETAFAMLVEVTERALAHTGKDEVLLVGGVAA 258 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 99999999999999999749397999757887
No 75
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=39.95 E-value=28 Score=15.50 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=6.2
Q ss_pred ECCCCCHHHHHHHHHHHC
Q ss_conf 879864699998787630
Q gi|254780505|r 41 LSGGLTPRFFLEELSIIN 58 (234)
Q Consensus 41 lsGGstp~~~y~~L~~~~ 58 (234)
+.+.......++.+.+.+
T Consensus 61 i~~~~~~~~~~~~~~~~~ 78 (264)
T cd06267 61 LAPSRLDDELLEELAALG 78 (264)
T ss_pred ECCCCCCHHHHHHHHHCC
T ss_conf 678889989999999869
No 76
>PRK00074 guaA GMP synthase; Reviewed
Probab=39.67 E-value=28 Score=15.47 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC--
Q ss_conf 99999999999997289779998798--64699998787630795323899813210035673202788999762356--
Q gi|254780505|r 19 LAKKVAEQLSIGITNKGTASIALSGG--LTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNK-- 94 (234)
Q Consensus 19 ~a~~i~~~i~~~i~~~~~~~i~lsGG--stp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~-- 94 (234)
..+..++.|++.+. +...-++|||| ||.. .+|..+.+. .|++..++|-=++-.+-.+.-...+++.|--++
T Consensus 202 ~i~~~i~~Ik~~Vg-~~kVi~~lSGGVDStV~---A~Ll~kAIG-d~l~cvfVD~GllRknE~~~V~~~~~~~lgl~~~~ 276 (513)
T PRK00074 202 FIEEAIEEIREQVG-DKKVILGLSGGVDSSVA---AVLLHKAIG-DQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIH 276 (513)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCCHHHH---HHHHHHHHH-HCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999838-76289972388308999---999999851-12489995377111672999999998861996799
Q ss_pred -CCCCCEEECCCCCCCHHHHH
Q ss_conf -77632144458878989999
Q gi|254780505|r 95 -AQKASFIPLYYPQKTIEEAI 114 (234)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~ 114 (234)
.....|+....+-.|||+=-
T Consensus 277 vdA~~~Fl~~L~gv~DPE~KR 297 (513)
T PRK00074 277 VDASDRFLSALAGVTDPEEKR 297 (513)
T ss_pred EEHHHHHHHHHCCCCCHHHHH
T ss_conf 224899999737998979967
No 77
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=39.05 E-value=29 Score=15.42 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 77999879864699998787630
Q gi|254780505|r 36 TASIALSGGLTPRFFLEELSIIN 58 (234)
Q Consensus 36 ~~~i~lsGGstp~~~y~~L~~~~ 58 (234)
.-.|+|-+|||-..+.+.|+++.
T Consensus 16 g~viGLGtGsTv~~~i~~L~~~~ 38 (213)
T cd01398 16 GMVIGLGTGSTVAYFIEALGERV 38 (213)
T ss_pred CCEEEECCHHHHHHHHHHHHHHH
T ss_conf 99998685599999999999877
No 78
>PRK00768 nadE NAD synthetase; Reviewed
Probab=38.56 E-value=29 Score=15.37 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHH
Q ss_conf 9899999999999999999997289779998798--6469
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGG--LTPR 48 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGG--stp~ 48 (234)
|+++......+.|-+.++++ .-..++|+|||| |+-.
T Consensus 19 ~~~~~i~~iv~~Lrdyv~k~--g~~g~VlGLSGGIDSAvt 56 (274)
T PRK00768 19 DPEEEIRRRVDFLKDYLKKS--GLKTLVLGISGGQDSTLA 56 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHH
T ss_conf 98999999999999999984--998399818857688999
No 79
>pfam06723 MreB_Mbl MreB/Mbl protein. This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl.
Probab=38.23 E-value=30 Score=15.34 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=12.6
Q ss_pred EEEEECHHHHHHHHHHHC
Q ss_conf 999818348999999980
Q gi|254780505|r 191 ALHIEGTQKKHVLEKAIS 208 (234)
Q Consensus 191 ~ll~~G~~K~~al~~~l~ 208 (234)
++++=|..+-..++++++
T Consensus 277 ViLvGGsSriP~v~~~l~ 294 (327)
T pfam06723 277 IVLTGGGALLRGLDKLLS 294 (327)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999776244147999999
No 80
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=37.93 E-value=12 Score=17.82 Aligned_cols=33 Identities=12% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 3238998132100356732027889997623567
Q gi|254780505|r 62 HKVVVTLVDERFVPLENLRSNQSFISKFFLQNKA 95 (234)
Q Consensus 62 ~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~ 95 (234)
++|+++-.-+|++|..|++ -.+.+.+.|++...
T Consensus 344 seVTvIE~~~~ILP~~D~D-Isk~ler~flK~rG 376 (673)
T PTZ00153 344 SEIIFFDYSPELLPIIDAD-VAKYFERVFIKNKP 376 (673)
T ss_pred CEEEEEECCCCCCCCCCHH-HHHHHHHHHHHCCC
T ss_conf 8699995366568988999-99999999864049
No 81
>PRK13776 formimidoylglutamase; Provisional
Probab=37.55 E-value=31 Score=15.27 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=39.5
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHH---HCCCCCCEEEEECCCCC
Q ss_conf 948989999999999999999999728977999879864-6999987876---30795323899813210
Q gi|254780505|r 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLT-PRFFLEELSI---INVDWHKVVVTLVDERF 73 (234)
Q Consensus 8 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGst-p~~~y~~L~~---~~~~w~kv~~~~~DER~ 73 (234)
.-++-|+..+.+++.+.+.++ +|.+.|+|=||-+ --+-|..+++ +.-+..|+-+.|.|=-+
T Consensus 90 ~~~~le~aq~~l~~~v~~ll~-----~g~~pIvLGGgH~iA~g~~~G~a~~~~~~~~~~riGIInfDAH~ 154 (311)
T PRK13776 90 AGDDLEAAQERYAQRVADLLA-----RGHRVVGLGGGHEIAYASFAGLARHLSRHERLPRIGILNFDAHF 154 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-----CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 786699999999999999997-----69857998885325343069999886303788716699972687
No 82
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=36.64 E-value=32 Score=15.18 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC--CHHHH--HHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 898999999999999999999972897799987986--46999--987876307953238998132100
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL--TPRFF--LEELSIINVDWHKVVVTLVDERFV 74 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs--tp~~~--y~~L~~~~~~w~kv~~~~~DER~V 74 (234)
.+.++..+.+...+.+.++. .....+++|||||- |-... .+++.+ ...-.++.-..+..+.|
T Consensus 3 ~d~~~~~~~~v~fl~~~l~~--~~~k~~VlGiSGGiDSa~~~~La~~A~~~-~~~~~~~~av~mP~~~~ 68 (268)
T COG0171 3 IDLEEEINRLVDFLRDYLKK--AGFKGVVLGLSGGIDSALVLALAVRALGK-GDSKENVLAVRLPYGYT 68 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHHHHCC-CCCHHHEEEEECCCCCC
T ss_conf 67999999999999999997--39998699766681999999999998565-65124326686788776
No 83
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=36.17 E-value=32 Score=15.14 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=33.8
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHH
Q ss_conf 987289994898999999999999999999972897799987986-46999987
Q gi|254780505|r 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL-TPRFFLEE 53 (234)
Q Consensus 1 M~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs-tp~~~y~~ 53 (234)
||..++.-+++...+++.+|+.|.+. .-++..-||+++|. .|-.++..
T Consensus 1 ~~~~~~vSw~~I~~~~~~lA~kI~~s-----~~~PDvIiaiaRGG~~pariLsd 49 (192)
T COG2236 1 KFPKLYVSWEEIHRLCRALAEKIRAS-----GFKPDVIVAIARGGLIPARILSD 49 (192)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHC-----CCCCCEEEEECCCCEEHHHHHHH
T ss_conf 99529964999999999999999974-----98776899986786027999999
No 84
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=36.14 E-value=32 Score=15.13 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=32.8
Q ss_pred CEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEEC
Q ss_conf 8299998183489999999808983206089996189996899833
Q gi|254780505|r 188 QFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWT 233 (234)
Q Consensus 188 ~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V~W~ 233 (234)
-++.+.+.|.-..+.++++++-...+-||++..+... .++.+.|.
T Consensus 90 i~i~~~v~gd~~~e~~~~~i~~a~ek~C~v~~~L~~~-~~i~~~~e 134 (137)
T COG1765 90 INIHFVVKGDLDEEKLKRAVELAEEKYCPVSRTLTKG-VKITISVE 134 (137)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHCCC-CCEEEEEE
T ss_conf 9899999668999999999987750678570452387-64799999
No 85
>KOG2014 consensus
Probab=36.11 E-value=32 Score=15.13 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHCCCEEEEECCC-CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 9999999999999999----9997289779998798-6469999878763079532389981321003567320278
Q gi|254780505|r 13 KRLAQKLAKKVAEQLS----IGITNKGTASIALSGG-LTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQS 84 (234)
Q Consensus 13 ~~l~~~~a~~i~~~i~----~~i~~~~~~~i~lsGG-stp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~ 84 (234)
++++++-....-++|+ .+.+.=...++.|.|| .+...+-+.+.-..+. .+.++|.|.|..++..+|+.
T Consensus 4 ~else~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~----~ltlLD~~~Vt~Ed~~~qFl 76 (331)
T KOG2014 4 EELSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVG----SLTLLDDRLVTEEDVGAQFL 76 (331)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEEEECCCHHHHHHHHHHHHCCCC----EEEEEECCCCCHHCCCCEEE
T ss_conf 55629999888889887167888764446299964853888887775330566----16884034566411774167
No 86
>COG4279 Uncharacterized conserved protein [Function unknown]
Probab=35.68 E-value=8.6 Score=18.64 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=7.6
Q ss_pred EEEECCCCCCCEEEE
Q ss_conf 899447887714340
Q gi|254780505|r 131 VVVLGMGIDGHTASF 145 (234)
Q Consensus 131 l~lLGiG~DGH~ASl 145 (234)
+.+.|.+.++-+|-|
T Consensus 158 f~lRG~~k~eL~a~l 172 (266)
T COG4279 158 FKLRGRNKEELLALL 172 (266)
T ss_pred EEECCCCHHHHHHHH
T ss_conf 643288889999998
No 87
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.65 E-value=33 Score=15.08 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=7.8
Q ss_pred EEECCCCCHHHHHHHHHHHCC
Q ss_conf 998798646999987876307
Q gi|254780505|r 39 IALSGGLTPRFFLEELSIINV 59 (234)
Q Consensus 39 i~lsGGstp~~~y~~L~~~~~ 59 (234)
|++.+.......++.+.+.++
T Consensus 59 iIi~~~~~~~~~~~~l~~~~i 79 (270)
T cd06296 59 VILVTPELTSAQRAALRRTGI 79 (270)
T ss_pred EEEECCCCCHHHHHHHHHCCC
T ss_conf 999068899999999997499
No 88
>KOG3363 consensus
Probab=35.64 E-value=29 Score=15.40 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=16.4
Q ss_pred HCCCCCCEEEECCCCCCCEE
Q ss_conf 15877648994478877143
Q gi|254780505|r 124 LIHFPFDVVVLGMGIDGHTA 143 (234)
Q Consensus 124 ~~~~~~Dl~lLGiG~DGH~A 143 (234)
...+.+|+.++|+|.+-|.-
T Consensus 107 tlePkidlLIvG~Gd~~~p~ 126 (196)
T KOG3363 107 TLEPKIDLLIVGCGDKKHPD 126 (196)
T ss_pred HCCCCCCEEEEECCCCCCCH
T ss_conf 32777657999447868812
No 89
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=35.23 E-value=33 Score=15.04 Aligned_cols=115 Identities=22% Similarity=0.168 Sum_probs=65.8
Q ss_pred HHHHH-HHHHHHHHHCCCEEEEECCCCCHHHHH---HHHH------------HHCCCCCCEEEE---ECCCCCCCCCCCC
Q ss_conf 99999-999999972897799987986469999---8787------------630795323899---8132100356732
Q gi|254780505|r 20 AKKVA-EQLSIGITNKGTASIALSGGLTPRFFL---EELS------------IINVDWHKVVVT---LVDERFVPLENLR 80 (234)
Q Consensus 20 a~~i~-~~i~~~i~~~~~~~i~lsGGstp~~~y---~~L~------------~~~~~w~kv~~~---~~DER~V~~~~~~ 80 (234)
|-..+ ..+.+ +++..-.+|=|.|+=-.++- +.|. +++ -+||++| +.+=++|..+=.+
T Consensus 51 AyN~lr~~lS~--~~l~~GvVCASAGNHAQGfAYaC~~lgv~G~vfmP~~TPkQK--~d~vk~FGge~i~~iL~GDtFD~ 126 (415)
T TIGR02079 51 AYNKLRKQLSD--EQLAKGVVCASAGNHAQGFAYACRKLGVHGRVFMPATTPKQK--VDKVKLFGGEFIEIILVGDTFDE 126 (415)
T ss_pred HHHHHHHHHHH--HHHCCEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCC--EEEEEECCCEEEEEEEECCCHHH
T ss_conf 99999999746--442082475156661246899850487440788714379776--13355228618999985570578
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHH-HHHHHHHHHHHHHCCC-CCCEEEECCCCCCCEE
Q ss_conf 0278899976235677632144458878989-9999999999631587-7648994478877143
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIE-EAIRIANEKICQLIHF-PFDVVVLGMGIDGHTA 143 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~Dl~lLGiG~DGH~A 143 (234)
.+.-.++.--++ ..+++|.+++..-++ +..- .-+-+.++... .+|++++++|-=|=+|
T Consensus 127 -~aa~A~~~~~~~---g~~~iPPFDD~~IIeGQGTv-a~Eil~ql~~~~k~D~V~~pVGGGGLis 186 (415)
T TIGR02079 127 -AAAAAKESVEKE---GKTFIPPFDDPDIIEGQGTV-AVEILEQLEEETKIDYVVVPVGGGGLIS 186 (415)
T ss_pred -HHHHHHHHHHHC---CCEECCCCCCHHHHHCHHHH-HHHHHHHCCCCCCCCEEEECCCCHHHHH
T ss_conf -999999999971---89016899875665110276-5667750586767768998477405788
No 90
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=34.86 E-value=34 Score=15.01 Aligned_cols=10 Identities=40% Similarity=0.431 Sum_probs=6.1
Q ss_pred CCC-CCCCCCC
Q ss_conf 210-0356732
Q gi|254780505|r 71 ERF-VPLENLR 80 (234)
Q Consensus 71 ER~-V~~~~~~ 80 (234)
-|+ |++++++
T Consensus 143 ~RtGv~~~~~~ 153 (389)
T cd06817 143 HRAGVPPESED 153 (389)
T ss_pred CCCCCCCCCHH
T ss_conf 96788988399
No 91
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=33.26 E-value=23 Score=16.03 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=26.2
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 48989999999999999999999728977999879864699
Q gi|254780505|r 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRF 49 (234)
Q Consensus 9 ~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~ 49 (234)
|+.-|.|.++.-+.+... +..++.++...||+|.|.|+..
T Consensus 77 f~~Te~MlkYFI~~v~~r-k~~~~P~P~~~icVP~GiT~VE 116 (337)
T TIGR00904 77 FEVTEKMLKYFIKKVHSR-KSFFRPKPRIVICVPSGITPVE 116 (337)
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEECCCCCHHH
T ss_conf 689999999999998567-7536898769998537998667
No 92
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=32.90 E-value=36 Score=14.81 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=19.0
Q ss_pred CEEEEE----CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 779998----798646999987876307953238998132100
Q gi|254780505|r 36 TASIAL----SGGLTPRFFLEELSIINVDWHKVVVTLVDERFV 74 (234)
Q Consensus 36 ~~~i~l----sGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V 74 (234)
.+.||+ .|..++. ..+.+++.--....+-+.+.|||+-
T Consensus 54 ~iviG~P~~~~g~~~~~-~~~~f~~~l~~~~~i~v~~~DEr~t 95 (99)
T smart00732 54 LIVIGLPLNMNGTASRE-TEEAFAELLKERFNLPVVLVDERLA 95 (99)
T ss_pred EEEECCCCCCCCCCCHH-HHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 89974752489981999-9999999985178998899958972
No 93
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=32.79 E-value=36 Score=14.80 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=12.8
Q ss_pred EEEEECHHHHHHHHHHHC
Q ss_conf 999818348999999980
Q gi|254780505|r 191 ALHIEGTQKKHVLEKAIS 208 (234)
Q Consensus 191 ~ll~~G~~K~~al~~~l~ 208 (234)
++++=|..+-..++++++
T Consensus 285 IiLvGGsSriP~i~~~l~ 302 (336)
T PRK13930 285 IVLTGGGALLRGLDKLLS 302 (336)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999877455147999999
No 94
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=31.65 E-value=26 Score=15.68 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=18.0
Q ss_pred EEECCCCCHHHHH-HHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 9987986469999-878763079532389981321003
Q gi|254780505|r 39 IALSGGLTPRFFL-EELSIINVDWHKVVVTLVDERFVP 75 (234)
Q Consensus 39 i~lsGGstp~~~y-~~L~~~~~~w~kv~~~~~DER~V~ 75 (234)
=-||||..+.-+. ++|++.. .++++||=+..
T Consensus 138 ~~LSGGQ~QRV~lARAL~~~p------~lllLDEP~~g 169 (254)
T COG1121 138 GELSGGQKQRVLLARALAQNP------DLLLLDEPFTG 169 (254)
T ss_pred CCCCCHHHHHHHHHHHHCCCC------CEEEECCCCCC
T ss_conf 546727999999999853699------98996687545
No 95
>pfam02540 NAD_synthase NAD synthase. NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation.
Probab=29.22 E-value=42 Score=14.43 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 9999999999972--8977999879864699998787630795323899813210
Q gi|254780505|r 21 KKVAEQLSIGITN--KGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERF 73 (234)
Q Consensus 21 ~~i~~~i~~~i~~--~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~ 73 (234)
+++.+.|++-+++ -..+.|+||||-- -.+-..|+.+-+.-.++.-+.+-.+.
T Consensus 3 ~~i~~~l~dyv~k~g~~gvViGlSGGID-Sav~a~La~~AlG~~~v~~v~mP~~~ 56 (243)
T pfam02540 3 ERLVDFLRDYVQKSGAKGVVLGLSGGID-SAVVAYLAVKALGKENVLALIMPSIN 56 (243)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 7999999999998199919997888799-99999999995597428999647778
No 96
>PRK13411 molecular chaperone DnaK; Provisional
Probab=29.16 E-value=42 Score=14.42 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-----EEEEECCCCCHHHHHHHHHHHC
Q ss_conf 999999999999999999972897-----7999879864699998787630
Q gi|254780505|r 13 KRLAQKLAKKVAEQLSIGITNKGT-----ASIALSGGLTPRFFLEELSIIN 58 (234)
Q Consensus 13 ~~l~~~~a~~i~~~i~~~i~~~~~-----~~i~lsGGstp~~~y~~L~~~~ 58 (234)
|++...+.+.+...++++++.-+- -.++|-||+|-.+..+.+.+..
T Consensus 300 E~L~~~L~~rt~~pv~~aL~dA~l~~~dId~ViLVGGSTRIP~Vq~~v~~~ 350 (655)
T PRK13411 300 EELAKDLVEATIEPVQQALKDAGLTPEDIDRIILVGGSTRIPAVQEAIQQF 350 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999999889999998099831178999988814657999999998
No 97
>TIGR02581 cas_cyan_RAMP CRISPR-associated RAMP protein, SSO1426 family; InterPro: IPR013411 Members of this CRISPR-associated (cas) family are found in the RAMP-2 subtype of CRISPR/cas locus and designated TM1809 family..
Probab=29.06 E-value=42 Score=14.41 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHCCC-CCCEEEEECCCCC--CCCCCCCCHHHHHHHHHHCCC
Q ss_conf 986469999878763079-5323899813210--035673202788999762356
Q gi|254780505|r 43 GGLTPRFFLEELSIINVD-WHKVVVTLVDERF--VPLENLRSNQSFISKFFLQNK 94 (234)
Q Consensus 43 GGstp~~~y~~L~~~~~~-w~kv~~~~~DER~--V~~~~~~Sn~~~~~~~ll~~~ 94 (234)
=|||-++.++...++-+- -..++.++.++++ .++++..+-..-.++.||.+.
T Consensus 47 PGSS~KG~lRs~~E~~lk~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~e~lL~~~ 101 (241)
T TIGR02581 47 PGSSLKGVLRSEVERVLKRRNLIAASDADPDYWVCDPDDAKCVKEKLKENLLTDA 101 (241)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCHHHHHHHHCCCCHH
T ss_conf 8752567888766655431331440689870776385233003454342037812
No 98
>CHL00094 dnaK heat shock protein 70
Probab=28.76 E-value=43 Score=14.38 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=7.9
Q ss_pred EEECCCCCHHHHHHHHHHH
Q ss_conf 9987986469999878763
Q gi|254780505|r 39 IALSGGLTPRFFLEELSII 57 (234)
Q Consensus 39 i~lsGGstp~~~y~~L~~~ 57 (234)
+.|-||+|-.+..+.+.+.
T Consensus 332 ViLVGGstRiP~V~~~l~~ 350 (622)
T CHL00094 332 VVLVGGSTRIPAIQELVKS 350 (622)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9993881256789999999
No 99
>pfam09793 AD Anticodon-binding domain. This domain of approximately 100 residues is conserved from plants to humans. It is frequently found in association with Lsm domain-containing proteins. It is an anticodon-binding domain of a prolyl-tRNA synthetase, whose PDB structure is available under the identifier 1h4q.
Probab=28.48 E-value=34 Score=14.97 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=25.3
Q ss_pred EECCCCCHHH--HHHHHHHH--CCCCCCEEEEECCCCCC
Q ss_conf 9879864699--99878763--07953238998132100
Q gi|254780505|r 40 ALSGGLTPRF--FLEELSII--NVDWHKVVVTLVDERFV 74 (234)
Q Consensus 40 ~lsGGstp~~--~y~~L~~~--~~~w~kv~~~~~DER~V 74 (234)
...-|-||.+ +|++|++. ...|..-.+..+||-.+
T Consensus 27 ~~g~gVS~egQ~lFdal~Kt~~~~~W~g~~IvV~~~V~I 65 (90)
T pfam09793 27 RIGKGVSPEGQELFDALAKTIPDCRWDGKNIVVLDEVTI 65 (90)
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCCEECCCCEEEECCEEE
T ss_conf 708998999999999999768886787982699571588
No 100
>PRK05439 pantothenate kinase; Provisional
Probab=28.39 E-value=43 Score=14.34 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHCCCEEEEECCC-----CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 7289779998798-----646999987876307953238998132100356732027889997623567763
Q gi|254780505|r 32 TNKGTASIALSGG-----LTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKA 98 (234)
Q Consensus 32 ~~~~~~~i~lsGG-----stp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~ 98 (234)
..+-.|.||++|- ||...+++.|..+--+-.+|.+.-+|-.+-| |.-+-++.+++..+.|.
T Consensus 82 ~~~~PfIIGIaGSVAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFLyp------Na~L~~rglm~RKGFPE 147 (312)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFLYP------NAELKERGLMKRKGFPE 147 (312)
T ss_pred CCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC------CHHHHHCCCCCCCCCCC
T ss_conf 8899989997620102628899999999950789994589934665578------68998767712478985
No 101
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.37 E-value=45 Score=14.23 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 99999999972897799987986469
Q gi|254780505|r 23 VAEQLSIGITNKGTASIALSGGLTPR 48 (234)
Q Consensus 23 i~~~i~~~i~~~~~~~i~lsGGstp~ 48 (234)
++.-+.+...++|.-.+..+++..+.
T Consensus 22 i~~gie~~~~~~gy~l~l~~~~~~~~ 47 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDS 47 (283)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHH
T ss_conf 99999999998499899996999999
No 102
>PRK07508 para-aminobenzoate synthase component I; Provisional
Probab=26.91 E-value=46 Score=14.18 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEC------CCCCHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCC
Q ss_conf 999999999972897799987------9864699998787630-7953238998132100356732
Q gi|254780505|r 22 KVAEQLSIGITNKGTASIALS------GGLTPRFFLEELSIIN-VDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 22 ~i~~~i~~~i~~~~~~~i~ls------GGstp~~~y~~L~~~~-~~w~kv~~~~~DER~V~~~~~~ 80 (234)
.-.+.+++.|.+...+-+.++ .-..|..+|+.|.+.+ .+.. .++..+++.+=--+|+
T Consensus 115 ~~v~~ik~~I~~Gd~YQvnlt~~~~~~~~~~p~~ly~~Lr~~~papy~--~~~~~~~~~ils~SPE 178 (377)
T PRK07508 115 ARFERLHRHIRAGDCYQANLTFPVDARWEGDPLALYRALAARQPVGYG--AYVDLGGPVILSRSPE 178 (377)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCCCCCEE--EEEECCCCEEEEECHH
T ss_conf 999999999975988999805999981689999999998227999859--9999799689997726
No 103
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=26.44 E-value=47 Score=14.13 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=24.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHH--CCCCC-CEEEEECCCCCC
Q ss_conf 7799987986469999878763--07953-238998132100
Q gi|254780505|r 36 TASIALSGGLTPRFFLEELSII--NVDWH-KVVVTLVDERFV 74 (234)
Q Consensus 36 ~~~i~lsGGstp~~~y~~L~~~--~~~w~-kv~~~~~DER~V 74 (234)
+..|++|||.--..++..|.+. ..+.. ++..+.+|..+=
T Consensus 1 kilva~SGG~DS~~Ll~ll~~~~~~~~~~~~l~~~hvnh~~r 42 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIP 42 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 989996584999999999999888648895699999569988
No 104
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT; InterPro: IPR014301 Members of this entry are the periplasmic protein TorT that, together with the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase and shows homology to a periplasmic D-ribose binding protein..
Probab=26.40 E-value=39 Score=14.59 Aligned_cols=91 Identities=23% Similarity=0.266 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHCCCEEEEE-C-----CCCCH--HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 999999999999-9999997289779998-7-----98646--9999878763079532389981321003567320278
Q gi|254780505|r 14 RLAQKLAKKVAE-QLSIGITNKGTASIAL-S-----GGLTP--RFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQS 84 (234)
Q Consensus 14 ~l~~~~a~~i~~-~i~~~i~~~~~~~i~l-s-----GGstp--~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~ 84 (234)
.|.-.+.++++. .-..-. .-+...|++ + ||+-+ .+|.++|..+++.-. .+-|.| |.+
T Consensus 112 ~MGy~~G~yL~~W~H~k~~-~s~~~~~~~lPGP~~~GGtk~v~~G~~~Al~~S~v~i~--~i~~aD-----------N~k 177 (304)
T TIGR02955 112 QMGYQAGEYLAKWRHPKHT-GSGPTTLALLPGPKNRGGTKPVTQGFRAALEGSDVEIV--AILWAD-----------NDK 177 (304)
T ss_pred HHHHHHHHHHHHHHCCCCC-CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEE--EECCCC-----------CCH
T ss_conf 3133765789865077889-88217898706778888857789999999726897999--801046-----------774
Q ss_pred HHHHHHHCCCCCCCCEE-ECCCCCCCHHHHHHHHH
Q ss_conf 89997623567763214-44588789899999999
Q gi|254780505|r 85 FISKFFLQNKAQKASFI-PLYYPQKTIEEAIRIAN 118 (234)
Q Consensus 85 ~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 118 (234)
-++++|++..-.+...+ .+...+-..|-|+.+..
T Consensus 178 elQRnLlQ~~L~~~~~idYl~G~AVAiE~AisEl~ 212 (304)
T TIGR02955 178 ELQRNLLQDLLKKHPDIDYLVGSAVAIEAAISELR 212 (304)
T ss_pred HHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHH
T ss_conf 67899999999856898788611999999999873
No 105
>KOG3655 consensus
Probab=26.38 E-value=25 Score=15.75 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCC-EEEEECCCCC-CCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE--ECC
Q ss_conf 532-3899813210-035673202788999762356776321444588789899999999999631587764899--447
Q gi|254780505|r 61 WHK-VVVTLVDERF-VPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVV--LGM 136 (234)
Q Consensus 61 w~k-v~~~~~DER~-V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~l--LGi 136 (234)
.+| |.+.|.-|-. +-....-++..-.-+.||++.... +.-- ...+++ ...+.+.+....+-.+++.- +-.
T Consensus 77 l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~---i~Ar-~e~Dld--~d~i~~~ls~A~gs~Ys~~~~~~r~ 150 (484)
T KOG3655 77 LPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVE---INAR-SEEDLD--EDAIREKLSKAVGSNYSLHTSSKRL 150 (484)
T ss_pred CCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHCCEEE---EECC-CHHHCC--HHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 765699973277657776543000499999986043389---8426-243148--7999999986522543300134101
Q ss_pred CCCCCEE
Q ss_conf 8877143
Q gi|254780505|r 137 GIDGHTA 143 (234)
Q Consensus 137 G~DGH~A 143 (234)
+.|+--+
T Consensus 151 ~~~e~~~ 157 (484)
T KOG3655 151 QKDEPAA 157 (484)
T ss_pred HCCCCCC
T ss_conf 0136789
No 106
>KOG4493 consensus
Probab=26.27 E-value=47 Score=14.11 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=36.9
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH-------HHHCCCCCCEEEEE
Q ss_conf 94898999999999999999999972897799987986469999878-------76307953238998
Q gi|254780505|r 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEEL-------SIINVDWHKVVVTL 68 (234)
Q Consensus 8 i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L-------~~~~~~w~kv~~~~ 68 (234)
+.=+..++..++.+.|.+.+.. |.+.+.+. -|..-..||+.= ....++|+.|++-+
T Consensus 65 V~~~s~EL~~kl~~~i~qF~~~-ir~~~~~g----~gQi~L~FYekskK~~Wf~~~e~ipWEqW~l~l 127 (219)
T KOG4493 65 VRCVSAELNEKLDEKIAQFIDT-IRNEAGAG----VGQISLEFYEKSKKKRWFFKDETIPWEQWTLHL 127 (219)
T ss_pred EEECHHHHHHHHHHHHHHHHHH-HHHCCCCC----CCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 9854699999999999999999-98287898----461765522115678987678875520289988
No 107
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815 This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=26.22 E-value=47 Score=14.10 Aligned_cols=153 Identities=13% Similarity=0.055 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC---C--CCCEEEEECCCCCC-CCCCCC----CHHHHHHH
Q ss_conf 99999999999997289779998798646999987876307---9--53238998132100-356732----02788999
Q gi|254780505|r 19 LAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINV---D--WHKVVVTLVDERFV-PLENLR----SNQSFISK 88 (234)
Q Consensus 19 ~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~---~--w~kv~~~~~DER~V-~~~~~~----Sn~~~~~~ 88 (234)
.|...+..+++ .+ .-|++++=.|-..+-..=.+.++ | -++=-+..+|+.+- .++-++ +-|..++.
T Consensus 20 PA~~~l~~L~e----~~-iPvI~CtSKTAAEv~~lr~~L~L~~~PyIvENGa~I~g~~~~~~~~~yp~~~~G~~y~~l~~ 94 (224)
T TIGR02463 20 PAAPWLTRLQE----AG-IPVILCTSKTAAEVEALRKALGLTGDPYIVENGAAIHGETLWREEPEYPRLILGISYEILRL 94 (224)
T ss_pred HHHHHHHHHHH----CC-CCEEECCCCCHHHHHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCCCCEECCCCHHHHHH
T ss_conf 77999999997----58-97642587307899999998488989817764605677521456666520213885378999
Q ss_pred HHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCEEEEC
Q ss_conf 76235677632144458878989999999999963158776489944788771434027864100221566743189953
Q gi|254780505|r 89 FFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIK 168 (234)
Q Consensus 89 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~~~~~~~~~ 168 (234)
.|-.-. .+..|-....++-+..+. .++. |+ .||-+ ........++.++.
T Consensus 95 ~L~~l~-~~~~f~l~~l~d~~daei--------~ElT---------GL--~~~~~-----------~la~~r~~Svpll~ 143 (224)
T TIGR02463 95 VLEELS-EELSFKLTPLDDLSDAEI--------AELT---------GL--SGEQL-----------ALAQDREASVPLLW 143 (224)
T ss_pred HHHHHH-HHHCCCCCCCCCCCHHHH--------HHHC---------CC--CHHHH-----------HHHHHHCCCCCCCC
T ss_conf 999998-862588778786445667--------5530---------77--78799-----------99863216737779
Q ss_pred -CCCCCCEE-----EEECHHHHHCCCEEEEEEECHHHHHHHHHHH
Q ss_conf -89987215-----8708788841582999981834899999998
Q gi|254780505|r 169 -DYTSNEQR-----MTMTFSALHDAQFLALHIEGTQKKHVLEKAI 207 (234)
Q Consensus 169 -~~~~p~~R-----ITlt~~~l~~a~~i~ll~~G~~K~~al~~~l 207 (234)
++..-.+| =.+|+....-+|...++=.+.+|-.|+..++
T Consensus 144 ~p~~~~~~~~~~~~~~~Gl~~~~GnRm~H~Lg~~~~KG~A~n~lk 188 (224)
T TIGR02463 144 RPSDSRMERFTALLADLGLAIVRGNRMSHVLGASSSKGKAANWLK 188 (224)
T ss_pred CCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCCHHHHHHHHH
T ss_conf 686645899999998727003207713466277888117999999
No 108
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=26.00 E-value=48 Score=14.08 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=24.3
Q ss_pred EEECCCC-CHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9987986-4699998787630795323899813210035
Q gi|254780505|r 39 IALSGGL-TPRFFLEELSIINVDWHKVVVTLVDERFVPL 76 (234)
Q Consensus 39 i~lsGGs-tp~~~y~~L~~~~~~w~kv~~~~~DER~V~~ 76 (234)
||++||| +.+..+.......+.-.++.++.+|.|+.+.
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~~D~yy~~~ 40 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDL 40 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 898899988599999999998099985899788888798
No 109
>PRK10530 phosphotransferase; Provisional
Probab=25.87 E-value=48 Score=14.06 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=29.7
Q ss_pred CCCEEEEEC-------CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 872899948-------98999999999999999999972897799987986469999878763079
Q gi|254780505|r 2 LQYKLYVAE-------NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVD 60 (234)
Q Consensus 2 ~~~~i~i~~-------~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~ 60 (234)
|.+|++.++ +...++.. -.+.|+.+ .++|. .+++++|+.+..+...+.+..++
T Consensus 1 M~~KlIa~DlDGTLl~~~~~i~~~----~~~ai~~l-~~~Gi-~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKKTILPS----SLEALARA-REAGY-QLIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHH----HHHHHHHH-HHCCC-EEEEECCCCHHHHHHHHHHHCCC
T ss_conf 995299990873635898959999----99999999-97899-99999599878889999980999
No 110
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=25.71 E-value=48 Score=14.04 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=38.1
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH--HCCCCCCEEEEECCC
Q ss_conf 98728999489899999999999999999997289779998798646999987876--307953238998132
Q gi|254780505|r 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSI--INVDWHKVVVTLVDE 71 (234)
Q Consensus 1 M~~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~--~~~~w~kv~~~~~DE 71 (234)
||..|+..-+|.-+ +..+.+.-..+.=++..+.+|||.----+++.+.+ ++..-.++.+++.|=
T Consensus 1 ~~~~K~y~~~nV~e-------A~~eRl~~if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~ 66 (407)
T COG3969 1 MSTYKIYLDENVLE-------AAIERLEWIFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDW 66 (407)
T ss_pred CCCHHCCCCCHHHH-------HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 97301047404999-------9999999988438838999237874058999999999981988657999700
No 111
>KOG1800 consensus
Probab=24.77 E-value=50 Score=13.94 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=51.7
Q ss_pred EEEEECCCCCHHHHHHH--HHHH--C--CC-CCCEEEEECCCCC-CCCCCCCCH--HHHHHHHHHCCCCCCCCEEECCC-
Q ss_conf 79998798646999987--8763--0--79-5323899813210-035673202--78899976235677632144458-
Q gi|254780505|r 37 ASIALSGGLTPRFFLEE--LSII--N--VD-WHKVVVTLVDERF-VPLENLRSN--QSFISKFFLQNKAQKASFIPLYY- 105 (234)
Q Consensus 37 ~~i~lsGGstp~~~y~~--L~~~--~--~~-w~kv~~~~~DER~-V~~~~~~Sn--~~~~~~~ll~~~~~~~~~~~~~~- 105 (234)
..+++-|+. |.+||-+ |.++ + +| |+|.-+-++==|+ |.+|||++- .+...+.+ .+ .++-.+-+
T Consensus 21 p~vcIVGsG-PAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~a-E~----~rfsf~gNv 94 (468)
T KOG1800 21 PRVCIVGSG-PAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTA-EH----ERFSFFGNV 94 (468)
T ss_pred CEEEEECCC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHH-HC----CCEEEEECC
T ss_conf 659998888-368899999972589970675415776653366334789821014788888875-13----544898030
Q ss_pred -CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCC
Q ss_conf -878989999999999963158776489944788771434027864
Q gi|254780505|r 106 -PQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGD 150 (234)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~ 150 (234)
-..+. .++.+.. .+|.++|.-|.||+=.-..||.+
T Consensus 95 ~vG~dv---------sl~eL~~-~ydavvLaYGa~~dR~L~IPGe~ 130 (468)
T KOG1800 95 KVGRDV---------SLKELTD-NYDAVVLAYGADGDRRLDIPGEE 130 (468)
T ss_pred EECCCC---------CHHHHHH-CCCEEEEEECCCCCCCCCCCCCC
T ss_conf 104631---------0899862-16679997158887406898743
No 112
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=24.72 E-value=50 Score=13.93 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=12.3
Q ss_pred EEEEECHHHHHHHHHHHC
Q ss_conf 999818348999999980
Q gi|254780505|r 191 ALHIEGTQKKHVLEKAIS 208 (234)
Q Consensus 191 ~ll~~G~~K~~al~~~l~ 208 (234)
++++=|..+-..+++.++
T Consensus 279 IvLvGGssrip~v~~~l~ 296 (325)
T PRK13928 279 IIMTGGGALLHGLDKLLA 296 (325)
T ss_pred EEEECCCCCHHHHHHHHH
T ss_conf 999875133267999999
No 113
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=24.63 E-value=51 Score=13.92 Aligned_cols=11 Identities=18% Similarity=0.057 Sum_probs=3.9
Q ss_pred HHHHHHHHHHC
Q ss_conf 99998787630
Q gi|254780505|r 48 RFFLEELSIIN 58 (234)
Q Consensus 48 ~~~y~~L~~~~ 58 (234)
...++.+.+.+
T Consensus 77 ~~~~~~l~~~~ 87 (275)
T cd06295 77 DPLPERLAETG 87 (275)
T ss_pred HHHHHHHHHCC
T ss_conf 79999999579
No 114
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.19 E-value=52 Score=13.87 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=9.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCC
Q ss_conf 9987986469999878763079
Q gi|254780505|r 39 IALSGGLTPRFFLEELSIINVD 60 (234)
Q Consensus 39 i~lsGGstp~~~y~~L~~~~~~ 60 (234)
|++.+.......++.+.+..++
T Consensus 59 iIi~~~~~~~~~~~~l~~~~iP 80 (265)
T cd06285 59 LILGDARSDDHFLDELTRRGVP 80 (265)
T ss_pred EEECCCCCCHHHHHHHHHCCCC
T ss_conf 9976887998999999967997
No 115
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.11 E-value=52 Score=13.86 Aligned_cols=41 Identities=34% Similarity=0.399 Sum_probs=25.4
Q ss_pred HHHCCCEEEEECCCCCHHH------HHHHHHH---HCCCCCCEEEEECCC
Q ss_conf 9728977999879864699------9987876---307953238998132
Q gi|254780505|r 31 ITNKGTASIALSGGLTPRF------FLEELSI---INVDWHKVVVTLVDE 71 (234)
Q Consensus 31 i~~~~~~~i~lsGGstp~~------~y~~L~~---~~~~w~kv~~~~~DE 71 (234)
+.++|.-.+.||||+++.+ ++++|.. +.=-.=+-|+.++||
T Consensus 51 l~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~inaHvGfvdE 100 (275)
T COG1856 51 LEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVGFVDE 100 (275)
T ss_pred HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCEEEEEEEEECCH
T ss_conf 98457605897578687997428999999999877537489998510017
No 116
>pfam06908 DUF1273 Protein of unknown function (DUF1273). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=23.74 E-value=53 Score=13.82 Aligned_cols=114 Identities=12% Similarity=0.146 Sum_probs=70.0
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH--HHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 72899948989999999999999999999728977999879864699998787--6307953238998132100356732
Q gi|254780505|r 3 QYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS--IINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 3 ~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~--~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
.+++-||.+.+.-.+.+-+.+.+.+...+++ | ....++||.....+..+-. +.+-+...+.+.. .+|.....
T Consensus 11 ~~ELgiF~~kdp~i~~IK~al~~~l~~llee-G-~ew~i~gg~lGve~WaaEvvl~LK~~Yp~ikl~~----i~PF~~q~ 84 (177)
T pfam06908 11 SFELGIFKDKDPKLKVIKKAIKKRLIELLEE-G-LEWFITGGQLGFEQWAAEVVLELKKEYPELKLAV----ITPFEEQG 84 (177)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-C-CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE----EECCCCCC
T ss_conf 1204777888856499999999999999977-9-8799976844699999999999986688827999----96550101
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCC--CCHHHHHHHHHHHHHH
Q ss_conf 027889997623567763214445887--8989999999999963
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQ--KTIEEAIRIANEKICQ 123 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 123 (234)
+|++-..+..+..+...++++-..... .+|.+ -+.+++.+-.
T Consensus 85 ~~Wne~nq~~y~~i~~~aDfv~~vs~~pY~~P~Q-~r~~n~fml~ 128 (177)
T pfam06908 85 ENWNEANQEKYATILAQADFVKSVSKRPYESPAQ-FRNYNQFMLE 128 (177)
T ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHH-HHHHHHHHHH
T ss_conf 3899889999999998599688515688899699-9998899996
No 117
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=23.53 E-value=53 Score=13.79 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=46.4
Q ss_pred CCEEEECCCCC-CCE-EE-EECHHHHHCCCEEEEEEECHHH-HHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 31899538998-721-58-7087888415829999818348-99999998089832060899961
Q gi|254780505|r 162 RSVIAIKDYTS-NEQ-RM-TMTFSALHDAQFLALHIEGTQK-KHVLEKAISGDDALEMPIRAILW 222 (234)
Q Consensus 162 ~~~~~~~~~~~-p~~-RI-Tlt~~~l~~a~~i~ll~~G~~K-~~al~~~l~~~~~~~~Pas~ll~ 222 (234)
+++.+++.... ... +- .+....|.+....+++-.|-.. .++.+++++...+.+.|+..+.+
T Consensus 136 ~s~~f~TGh~~~~~~~~~~~~~W~~lA~~~~Tlv~yMG~~~l~~I~~~Li~~G~~~~tPvA~v~~ 200 (242)
T TIGR01469 136 RSVTFVTGHEAKEGEEALNEVDWEALAKGGGTLVIYMGVANLAEIAKELIEAGRDPDTPVAVVEW 200 (242)
T ss_pred CCEEEEEEEEECCCCCCCCCCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 73168853540688877675786671576772688621788999999999638896782744432
No 118
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=22.96 E-value=55 Score=13.72 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=14.1
Q ss_pred HHHHHHHHHH-HCC-CEEEEECCCCCHHHHHHHH
Q ss_conf 9999999997-289-7799987986469999878
Q gi|254780505|r 23 VAEQLSIGIT-NKG-TASIALSGGLTPRFFLEEL 54 (234)
Q Consensus 23 i~~~i~~~i~-~~~-~~~i~lsGGstp~~~y~~L 54 (234)
++..+++-++ .+| ...++||||+-=..+.+..
T Consensus 262 vAA~L~~K~~~~kG~K~~~v~SGGNID~~~l~~i 295 (381)
T TIGR01127 262 VAAVLEDKVDYVKGKKVAVVVSGGNIDLNLLEKI 295 (381)
T ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 9999975403689828999985477686677788
No 119
>COG0147 TrpE Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.60 E-value=56 Score=13.68 Aligned_cols=177 Identities=12% Similarity=0.030 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHCCCEEEEEC------CCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99999999972897799987------986469999878763079532389981321003567320278899976235677
Q gi|254780505|r 23 VAEQLSIGITNKGTASIALS------GGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQ 96 (234)
Q Consensus 23 i~~~i~~~i~~~~~~~i~ls------GGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~ 96 (234)
..+.+++.|.+...+.+++| .-..|..+|+.|...+ +-.-..++..+++.|=--+|++..+.=.+ ...-.++
T Consensus 199 ~V~~~~e~I~~Gd~fQvvlS~r~~~~~~~~p~~~y~~Lr~~N-PspY~~~l~~~~~~ivg~SPE~~v~v~~~-~i~t~PI 276 (462)
T COG0147 199 AVRKAKEYIRAGDIYQVVLSRRFEAPCDGDPLALYRRLRQRN-PSPYMFFLRLGDFTLVGASPELFVKVDGN-RIETRPI 276 (462)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHHHHHHHCC-CCCHHHEEECCCCEEEEECHHHHEEECCC-EEEEECC
T ss_conf 999999999759859998426998506899899999997349-96112103169818999760563788088-8999165
Q ss_pred CCCEEECCCCCCCHHHHHHHHHH------HHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCEEEECCC
Q ss_conf 63214445887898999999999------996315877648994478877143402786410022156674318995389
Q gi|254780505|r 97 KASFIPLYYPQKTIEEAIRIANE------KICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDY 170 (234)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~~~~~~~~~~~ 170 (234)
.-+. +. ..++++..+...+ ..++..- ++=|+--+=|-+| .||+-.....+..+....+.-..+.
T Consensus 277 aGTr-~R---g~~~~eD~~~~~eLl~d~KE~AEh~M----lVDL~RNDl~rV~--~~GSV~V~~l~~Ve~ys~V~HlvS~ 346 (462)
T COG0147 277 AGTR-PR---GADPEEDEALEAELLNDEKERAEHLM----LVDLARNDLGRVC--EPGSVKVPELMEVERYSHVMHLVST 346 (462)
T ss_pred CCCC-CC---CCCHHHHHHHHHHHHCCHHHHHHHHH----HHHHHHCCCCCCC--CCCEEEECEEEEEEECCCEEEEEEE
T ss_conf 5665-68---99824429999988539288888899----9988760641135--7875982403799975834798779
Q ss_pred CCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf 98721587087888415829999818348999999980898
Q gi|254780505|r 171 TSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 171 ~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
-...-+=.++.-.+++|--=.=.++|+-|..+++-+-+-+.
T Consensus 347 V~G~L~~~~~~~d~l~A~fPaGTvTGAPK~rAMeiI~elE~ 387 (462)
T COG0147 347 VTGRLKPGLDALDALRALFPAGTVTGAPKVRAMEIIEELEP 387 (462)
T ss_pred EEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99994899999999997289867678769999999999707
No 120
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=22.10 E-value=57 Score=13.62 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 989999999999999999999728-----9779998798646999987876307
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNK-----GTASIALSGGLTPRFFLEELSIINV 59 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~-----~~~~i~lsGGstp~~~y~~L~~~~~ 59 (234)
..|++.+.+.+.+...++++++.- .--.|.|-||+|=.+..+.+.+..+
T Consensus 303 ~FE~l~~~l~~r~~~~i~~aL~~a~l~~~dId~ViLVGGsTRiP~Vq~~l~~~f 356 (657)
T PTZ00009 303 RFEELCGDLFRSTLQPVEKVLQDAKMDKRSVHDVVLVGGSTRIPKVQSLISDFF 356 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 999999999998999999999973799525149998088146768999999981
No 121
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=21.46 E-value=59 Score=13.53 Aligned_cols=109 Identities=14% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCC-CCHHH-HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9999999999997289779998798-64699-998787630795323899813210035673202788999762356776
Q gi|254780505|r 20 AKKVAEQLSIGITNKGTASIALSGG-LTPRF-FLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQK 97 (234)
Q Consensus 20 a~~i~~~i~~~i~~~~~~~i~lsGG-stp~~-~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~ 97 (234)
+..+...++.++.. +.+|.++|| +|.+. +..+|... + ..|||+|-.+|. .+..+.+
T Consensus 148 ~~~~~~fL~~aV~~--r~NIlIsGgTGSGKTTllnALl~~-I--------P~~eRIvtIEDt-------~EL~l~~---- 205 (343)
T PRK13851 148 NGDLEAFLHACVVG--RLTMLLCGPTGSGKTTMSKTLISA-I--------PPQERLITIEDT-------LELVIPH---- 205 (343)
T ss_pred CHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHC-C--------CCCCCEEEECCC-------CCCCCCC----
T ss_conf 37799999999976--988999888986199999999962-8--------965527996115-------0025899----
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEC---------------CCCCCCEEEECCCCC
Q ss_conf 32144458878989999999999963158776489944---------------788771434027864
Q gi|254780505|r 98 ASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLG---------------MGIDGHTASFFPKGD 150 (234)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLG---------------iG~DGH~ASlFP~~~ 150 (234)
.+.+++...........-.....++.......|-+++| -|-+|=++++=-+++
T Consensus 206 ~n~V~l~~~~~~~g~~~vt~~~Ll~~aLRmrPDRIivGEvRG~EA~d~L~A~nTGH~GsitTiHAnSa 273 (343)
T PRK13851 206 ENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMRDDAAWAYLSEVVSGHPGSISTIHGANP 273 (343)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCH
T ss_conf 99689996589888583979999999860799828998526699999999984699983033567999
No 122
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=21.40 E-value=59 Score=13.53 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 999999999999999999972897799987986469999878763079532389981321
Q gi|254780505|r 13 KRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDER 72 (234)
Q Consensus 13 ~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER 72 (234)
+.+.+.-+--..+.++++.++...-++|+|.=.|+.-+-+.+..-..|+-++++.+.|+.
T Consensus 122 e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~ 181 (391)
T COG1453 122 ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQK 181 (391)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 789999703748999999856967886315789789999999638861688642101400
No 123
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.40 E-value=59 Score=13.53 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=11.3
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 81321003567320278899976235
Q gi|254780505|r 68 LVDERFVPLENLRSNQSFISKFFLQN 93 (234)
Q Consensus 68 ~~DER~V~~~~~~Sn~~~~~~~ll~~ 93 (234)
-+|| ++.-.-.++|..++.+.|.+.
T Consensus 7 iG~E-lL~G~i~dtN~~~l~~~L~~~ 31 (170)
T cd00885 7 IGDE-LLSGQIVDTNAAFLAKELAEL 31 (170)
T ss_pred ECCC-CCCCCCCCCHHHHHHHHHHHC
T ss_conf 8235-406702332499999999977
No 124
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=21.28 E-value=59 Score=13.51 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=9.2
Q ss_pred CEEEEEEECHHH--HHHHHHHHC
Q ss_conf 829999818348--999999980
Q gi|254780505|r 188 QFLALHIEGTQK--KHVLEKAIS 208 (234)
Q Consensus 188 ~~i~ll~~G~~K--~~al~~~l~ 208 (234)
+.++|..+|..+ +.++.+++.
T Consensus 124 ~T~VFcLPGSt~ACrtaWd~Ii~ 146 (163)
T TIGR02667 124 GTLVFCLPGSTGACRTAWDKIIR 146 (163)
T ss_pred CEEEEECCCCCHHHHHHHHHHHH
T ss_conf 80788706987155667889998
No 125
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family; InterPro: IPR013413 Members of this minor CRISPR-associated (Cas) protein family are encoded in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum..
Probab=21.22 E-value=59 Score=13.50 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCHHHHH--HHHH--HHCCCCCCEEEEECCCC
Q ss_conf 9999999999999999728977-99987986469999--8787--63079532389981321
Q gi|254780505|r 16 AQKLAKKVAEQLSIGITNKGTA-SIALSGGLTPRFFL--EELS--IINVDWHKVVVTLVDER 72 (234)
Q Consensus 16 ~~~~a~~i~~~i~~~i~~~~~~-~i~lsGGstp~~~y--~~L~--~~~~~w~kv~~~~~DER 72 (234)
..++|+.|.+.+.+..+++... +.-||||+=--++| -+|+ .+.-| |+.=.++||=
T Consensus 114 n~AaA~~I~~~va~l~~~~d~~lh~SlAGGRKTMGfyLG~Al~Lfar~~D--~l~HVLV~ee 173 (224)
T TIGR02584 114 NEAAAEFIVKLVAKLTAAKDAVLHASLAGGRKTMGFYLGYALSLFAREQD--RLSHVLVSEE 173 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC--EEEEEEECCC
T ss_conf 78899899999987533048389986068725788999999997368887--0688863577
No 126
>TIGR02070 mono_pep_trsgly monofunctional biosynthetic peptidoglycan transglycosylase; InterPro: IPR011812 This family is one of the transglycosylases involved in the late stages of peptidoglycan biosynthesis. Members tend to be small, about 240 amino acids in length, and consist almost entirely of a domain, which describes transglycosylases. Species with this protein will have several other transglycosylases as well. All species with this protein are proteobacteria that produce murein (peptidoglycan).; GO: 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0009274 peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=21.07 E-value=60 Score=13.48 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999999728977999879864699998787630795323899813210-03567320278899976235677632144
Q gi|254780505|r 25 EQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERF-VPLENLRSNQSFISKFFLQNKAQKASFIP 102 (234)
Q Consensus 25 ~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~-V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~ 102 (234)
+.|++|++.+..-.=++.|||| +-+-+++.-+ +-.+|- += ...+--..++-+.++++-=+-+-+..
T Consensus 88 eaiq~A~e~Nek~g~~v~GgST---ISQQlAKNlF--------Lw~gr~~lR-KG~Ea~~T~llE~~w~K~RIlEvYLN 154 (228)
T TIGR02070 88 EAIQKALEKNEKSGKVVRGGST---ISQQLAKNLF--------LWSGRSYLR-KGLEAWITVLLETLWSKKRILEVYLN 154 (228)
T ss_pred HHHHHHHHHHHHCCCEEECCCH---HHHHHHHHHH--------HCCCCCHHH-HHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 7999999963124875605530---7899999864--------227874014-66799999999887487311411110
No 127
>PRK10696 C32 tRNA thiolase; Provisional
Probab=21.06 E-value=60 Score=13.48 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=51.7
Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC-
Q ss_conf 9972897799987986469999878763----07953238998132100356732027889997623567763214445-
Q gi|254780505|r 30 GITNKGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY- 104 (234)
Q Consensus 30 ~i~~~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~- 104 (234)
-|+...+..+|||||.--..++..|... .+++ .+....+|...-.. ....+.+ ++..++.+..++...
T Consensus 35 MIedGDRVlVglSGGKDS~~LL~iL~~Lq~~api~F-eLvAv~lD~~~pGf-----~~~~L~~-yl~~lGvp~~i~~~d~ 107 (311)
T PRK10696 35 MIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINF-SLVAVNLDQKQPGF-----PEHILPE-YLEKLGVEYKIVEENT 107 (311)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCC-EEEEEEECCCCCCC-----CHHHHHH-HHHHCCCCCEEEEEEH
T ss_conf 778999999982678889999999999998589985-59999837899998-----8068899-9997499707998407
Q ss_pred --------CCCCCHHHHHHHHHH--HHHHHCCCCCCEEEECCCCCCCE
Q ss_conf --------887898999999999--99631587764899447887714
Q gi|254780505|r 105 --------YPQKTIEEAIRIANE--KICQLIHFPFDVVVLGMGIDGHT 142 (234)
Q Consensus 105 --------~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~lLGiG~DGH~ 142 (234)
....++-..|.+..+ .+......+++-+-||==-|--+
T Consensus 108 ~~iv~~~~~egks~CslCsRlRRg~Ly~~A~e~G~nKIALGHH~DDi~ 155 (311)
T PRK10696 108 YGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDIL 155 (311)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
T ss_conf 679987543688637899999999999999986998798606505589
No 128
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=20.96 E-value=60 Score=13.47 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=57.0
Q ss_pred HHHHHCCCCCCCCEEECCCCC-CCHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCCCEEEE--CCCC-------CCCEEE
Q ss_conf 997623567763214445887-898999999999996315-87764899447887714340--2786-------410022
Q gi|254780505|r 87 SKFFLQNKAQKASFIPLYYPQ-KTIEEAIRIANEKICQLI-HFPFDVVVLGMGIDGHTASF--FPKG-------DTLSIA 155 (234)
Q Consensus 87 ~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Dl~lLGiG~DGH~ASl--FP~~-------~~l~~~ 155 (234)
++..+.+++.+.....++... +.. |.....-+..+. ..+|+ ++-|=.|||=-.. |||. ..|+++
T Consensus 185 ~~~v~~~la~~~GlFFFf~S~~C~~---C~~~~pil~~~~~~YG~~--V~pvS~DG~PLp~G~FPn~~pD~G~a~~L~iG 259 (306)
T TIGR02740 185 KDRVLKELAKKSGLFFFFKSDDCPY---CHAQAPILKAFEDRYGIE--VLPVSVDGGPLPGGKFPNARPDAGQAQKLKIG 259 (306)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCC---HHHHHHHHHHHHHHCCCE--EEEEEECCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 9999999740751689972788662---268999999999731970--89998458887878888852140367540467
Q ss_pred CCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEE
Q ss_conf 1566743189953899872158708788841582999981
Q gi|254780505|r 156 LDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIE 195 (234)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~ 195 (234)
.+......+++... +.-..+|+.|.=..-....++++++
T Consensus 260 td~~VPA~~L~~p~-p~~~~~igfG~~S~~~L~~Ri~~~a 298 (306)
T TIGR02740 260 TDRTVPAVFLVDPK-PNQITPIGFGVMSADELVDRILLAA 298 (306)
T ss_pred CCCCCCEEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 66546658999858-9903687402003888988877764
No 129
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=20.96 E-value=60 Score=13.47 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 989999999999999999999728977999879864699998787630
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN 58 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~ 58 (234)
+.+++-+.+|+..++.+ +..-.|+|=+|||-..+.+.|.++.
T Consensus 2 ~~d~~K~~aA~~A~~~V------~~gmviGLGtGSTv~~~i~~L~~~~ 43 (222)
T PRK00702 2 TQDELKKAAAEAAAEYV------EDGMIVGLGTGSTAAYFIDALGERV 43 (222)
T ss_pred CHHHHHHHHHHHHHHHC------CCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 98999999999999747------9999998583799999999999988
No 130
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.86 E-value=60 Score=13.46 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=6.6
Q ss_pred HHHCCCEEEEECCCCCH
Q ss_conf 97289779998798646
Q gi|254780505|r 31 ITNKGTASIALSGGLTP 47 (234)
Q Consensus 31 i~~~~~~~i~lsGGstp 47 (234)
+.++|...+...+...+
T Consensus 26 ~~~~gY~~~i~~s~~~~ 42 (269)
T cd06288 26 AREHGYLLLVVNTGGDD 42 (269)
T ss_pred HHHCCCEEEEEECCCCH
T ss_conf 99869989999689998
No 131
>KOG2249 consensus
Probab=20.55 E-value=54 Score=13.75 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.2
Q ss_pred CCCEEEECCCCCCCEEE
Q ss_conf 76489944788771434
Q gi|254780505|r 128 PFDVVVLGMGIDGHTAS 144 (234)
Q Consensus 128 ~~Dl~lLGiG~DGH~AS 144 (234)
.+|.-+.|.|+||+.-.
T Consensus 109 AmDCEMVG~Gp~G~~s~ 125 (280)
T KOG2249 109 AMDCEMVGVGPDGRESL 125 (280)
T ss_pred EEEEEEECCCCCCCCEE
T ss_conf 97404751479976000
No 132
>PRK10513 sugar phosphatase; Provisional
Probab=20.52 E-value=61 Score=13.41 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCCEEEEECCHHHH---HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 87289994898999---9999999999999999728977999879864699998787630795
Q gi|254780505|r 2 LQYKLYVAENKKRL---AQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDW 61 (234)
Q Consensus 2 ~~~~i~i~~~~~~l---~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w 61 (234)
|++|++.++=--.+ ...+.....+.++.+ .++|. .+++++|+++..+...+.+..++.
T Consensus 1 M~iKli~~DlDGTLl~~~~~i~~~~~~ai~~l-~~~Gi-~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDHTISPAVKNAIAAA-RAKGV-NVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH-HHCCC-EEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 98429999366252589796899999999999-97899-999997998687899999838888
No 133
>PRK13660 hypothetical protein; Provisional
Probab=20.49 E-value=61 Score=13.41 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=67.9
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH--HHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 7289994898999999999999999999972897799987986469999878--76307953238998132100356732
Q gi|254780505|r 3 QYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEEL--SIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 3 ~~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L--~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
.+++-||.+.+--.+.+-+.+.+.+...+++ | ....++||.....+..+- .+.+-+...+.+.. .+|...-.
T Consensus 11 ~~ELgiF~~kdp~i~~IK~alk~~L~~llEe-G-leW~i~gGqlGve~WaaEvvl~Lk~~Yp~lkla~----i~PF~~~~ 84 (183)
T PRK13660 11 SFELGIFKDKDPKVKVIKKAIKRKLIALLEE-G-LEWVIISGQLGVEQWAAEVALELKEEYPDLKLAV----ITPFEEHG 84 (183)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC-C-CCEEEECCCCCHHHHHHHHHHHHHHHCHHEEEEE----EECCCCHH
T ss_conf 3100666888977489999999999999977-9-8399975842299999999999985550305876----85540023
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCC--CCHHHHHHHHHHHHHH
Q ss_conf 027889997623567763214445887--8989999999999963
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQ--KTIEEAIRIANEKICQ 123 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 123 (234)
+|++--.+.-+..+...++|+-..... .+|.+- +.|++.+-.
T Consensus 85 ~~Wne~nq~k~~~l~~~aDf~~~vs~~pYe~P~Q~-r~~~~Fml~ 128 (183)
T PRK13660 85 ENWNEANQEKLANILKQVDFVKSISKRPYESPGQF-RQYQQFMLE 128 (183)
T ss_pred CCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHH-HHHHHHHHH
T ss_conf 45897899999999984883330157998897999-888899996
No 134
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.42 E-value=62 Score=13.40 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=34.9
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC------------------CHHHHHHHHHHHC-CCCCCEEE
Q ss_conf 9994898999999999999999999972897799987986------------------4699998787630-79532389
Q gi|254780505|r 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL------------------TPRFFLEELSIIN-VDWHKVVV 66 (234)
Q Consensus 6 i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGs------------------tp~~~y~~L~~~~-~~w~kv~~ 66 (234)
+++.++.|-..| +.+.+... ...-+--..++.||. ||-.+.+.|.+.. +..+++.+
T Consensus 88 LILvPTRELA~Q-I~~~~~~l----~~~~~lr~~~l~GG~~~~~q~~~L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~ 162 (574)
T PRK04537 88 LILAPTRELAIQ-IHKDAVKF----GADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEI 162 (574)
T ss_pred EEECCCHHHHHH-HHHHHHHH----HCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEE
T ss_conf 997798999999-99999998----6458977999979966889999873599989989899999998179865333158
Q ss_pred EECCC
Q ss_conf 98132
Q gi|254780505|r 67 TLVDE 71 (234)
Q Consensus 67 ~~~DE 71 (234)
+-+||
T Consensus 163 LVLDE 167 (574)
T PRK04537 163 CVLDE 167 (574)
T ss_pred EEECC
T ss_conf 99627
Done!