HHsearch results for GI: 254780505 and protein with PDBid: 2gnp_A
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae TIGR4} SCOP: c.124.1.8
Probab=99.15 E-value=9e-10 Score=78.51 Aligned_cols=194 Identities=10% Similarity=0.014 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999999999999972897799987986469999878763079532389981321003567320278899976
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF 90 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l 90 (234)
+.+.+.+.++...++.+...+++ ...|++++|+|...+.+.|... +..+++|+.+.-- ++..+...+...+-..|
T Consensus 35 ~~~~~~~~l~~~aA~~l~~~l~~--~~~IGv~wG~Tl~~~~~~l~~~--~~~~~~vv~l~Gg-~~~~~~~~~~~~i~~~l 109 (266)
T 2gnp_A 35 TPTILSERISQVAAGVLRNLIDD--NMKIGFSWGKSLSNLVDLIHSK--SVRNVHFYPLAGG-PSHIHAKYHVNTLIYEM 109 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCT--TCEEEECCSHHHHHHHHHCCCC--CCSSCEEEESBCC-CTTSCGGGSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHCCC--CCCCCEEEECCCC-CCCCCCCCCHHHHHHHH
T ss_conf 76799999999999999985778--9989993888899999971755--7677348824788-77776656899999999
Q ss_pred HCCCCCCCCEEECCCCCCCHHHHHH-----HHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE---CCCC---
Q ss_conf 2356776321444588789899999-----9999996315877648994478877143402786410022---1566---
Q gi|254780505|r 91 LQNKAQKASFIPLYYPQKTIEEAIR-----IANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA---LDTH--- 159 (234)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~---~~~~--- 159 (234)
-.+...+..+++.|.-..+.+.... .+.+.+.... ..|++++|+|.-++.+++++..-..+.. +...
T Consensus 110 A~~~~~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~~~~~~--~~diaivGIG~~~~~~~~~~~~~~~~~~~~~l~~~gav 187 (266)
T 2gnp_A 110 SRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWK--DLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTV 187 (266)
T ss_dssp HHHHTCEECCCCSCSBCSSHHHHHHHHTSTTTHHHHHHTT--SCSEEEECCEECSHHHHHTTTTTSCHHHHHHHHHTTCC
T ss_pred HHHCCCEEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCHH
T ss_conf 9980996652247556799999999975769999999984--49999995766777753003689999999999876869
Q ss_pred CCCCEEEECCCCC------CCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7431899538998------721587087888415829999818348999999980898
Q gi|254780505|r 160 TPRSVIAIKDYTS------NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 160 ~~~~~~~~~~~~~------p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
.+-...+.+.... ..+-|++++..|.++++++.++.|++|++++..++.|.-
T Consensus 188 Gdi~g~f~d~~G~~v~~~~~~r~I~i~l~~l~~~~~vI~vA~G~~K~~aI~aAL~gg~ 245 (266)
T 2gnp_A 188 GEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANL 245 (266)
T ss_dssp EEETTEEECTTSCCCCHHHHTTBCBCCHHHHTTSSEEEEECCSGGGHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHCCCCEEEEECCHHHHHHHHHHHHCCC
T ss_conf 9999887345899865777751442578997068968999568166999999983599