HHsearch results for GI: 254780505 and protein with PDBid: 2gnp_A

>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae TIGR4} SCOP: c.124.1.8
Probab=99.15  E-value=9e-10  Score=78.51  Aligned_cols=194  Identities=10%  Similarity=0.014  Sum_probs=117.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98999999999999999999972897799987986469999878763079532389981321003567320278899976
Q gi|254780505|r   11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF   90 (234)
Q Consensus        11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l   90 (234)
                      +.+.+.+.++...++.+...+++  ...|++++|+|...+.+.|...  +..+++|+.+.-- ++..+...+...+-..|
T Consensus        35 ~~~~~~~~l~~~aA~~l~~~l~~--~~~IGv~wG~Tl~~~~~~l~~~--~~~~~~vv~l~Gg-~~~~~~~~~~~~i~~~l  109 (266)
T 2gnp_A           35 TPTILSERISQVAAGVLRNLIDD--NMKIGFSWGKSLSNLVDLIHSK--SVRNVHFYPLAGG-PSHIHAKYHVNTLIYEM  109 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCT--TCEEEECCSHHHHHHHHHCCCC--CCSSCEEEESBCC-CTTSCGGGSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHCCC--CCCCCEEEECCCC-CCCCCCCCCHHHHHHHH
T ss_conf             76799999999999999985778--9989993888899999971755--7677348824788-77776656899999999


Q ss_pred             HCCCCCCCCEEECCCCCCCHHHHHH-----HHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEE---CCCC---
Q ss_conf             2356776321444588789899999-----9999996315877648994478877143402786410022---1566---
Q gi|254780505|r   91 LQNKAQKASFIPLYYPQKTIEEAIR-----IANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIA---LDTH---  159 (234)
Q Consensus        91 l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~---~~~~---  159 (234)
                      -.+...+..+++.|.-..+.+....     .+.+.+....  ..|++++|+|.-++.+++++..-..+..   +...   
T Consensus       110 A~~~~~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~~~~~~--~~diaivGIG~~~~~~~~~~~~~~~~~~~~~l~~~gav  187 (266)
T 2gnp_A          110 SRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWK--DLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTV  187 (266)
T ss_dssp             HHHHTCEECCCCSCSBCSSHHHHHHHHTSTTTHHHHHHTT--SCSEEEECCEECSHHHHHTTTTTSCHHHHHHHHHTTCC
T ss_pred             HHHCCCEEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCHH
T ss_conf             9980996652247556799999999975769999999984--49999995766777753003689999999999876869


Q ss_pred             CCCCEEEECCCCC------CCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf             7431899538998------721587087888415829999818348999999980898
Q gi|254780505|r  160 TPRSVIAIKDYTS------NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD  211 (234)
Q Consensus       160 ~~~~~~~~~~~~~------p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~  211 (234)
                      .+-...+.+....      ..+-|++++..|.++++++.++.|++|++++..++.|.-
T Consensus       188 Gdi~g~f~d~~G~~v~~~~~~r~I~i~l~~l~~~~~vI~vA~G~~K~~aI~aAL~gg~  245 (266)
T 2gnp_A          188 GEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANL  245 (266)
T ss_dssp             EEETTEEECTTSCCCCHHHHTTBCBCCHHHHTTSSEEEEECCSGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHCCCCEEEEECCHHHHHHHHHHHHCCC
T ss_conf             9999887345899865777751442578997068968999568166999999983599