HHsearch results for GI: 254780505 and protein with PDBid: 3kv1_A
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.70A {Vibrio fischeri ES114}
Probab=98.31 E-value=1.3e-05 Score=52.96 Aligned_cols=195 Identities=9% Similarity=0.050 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89899999999999999999997289779998798646999987876307953238998132100356732027889997
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKF 89 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ 89 (234)
++.++..+.+++..++.+...++. .-.|+++.|+|...+.+.|... .-.+++|..+== -+...+...+...+-+.
T Consensus 32 ~~~~~~~~~v~~~aA~~l~~~l~~--~~~iGv~wG~Tl~~~~~~l~~~--~~~~~~vv~l~G-g~~~~~~~~~~~~i~~~ 106 (267)
T 3kv1_A 32 PNTNEQRKQVAALVSSYLNNNLQE--GMAVAVGQGQNVAAVADHAGIV--TQRNARFVSAIG-GTHRSGDIINADHICRR 106 (267)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCCT--TCEEEECCSHHHHHHHHCCCCC--CCCCCEEEESBC-BCC----CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHCCCC--CCCCCEEEECCC-CCCCCCCCCCHHHHHHH
T ss_conf 993699999999999999975768--9889994788999999835766--778956994688-76777675689999999
Q ss_pred HHCCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCC-----CCCEEECCC-
Q ss_conf 6235677632144458878989999-----99999996315877648994478877143402786-----410022156-
Q gi|254780505|r 90 FLQNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKG-----DTLSIALDT- 158 (234)
Q Consensus 90 ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~-----~~l~~~~~~- 158 (234)
|-+....+..++|.|.--.+.+... ..+.+-+.... ..|+++.|+|.=+..+++.... +........
T Consensus 107 lA~~~gg~~~~l~aP~~v~s~~~~~~l~~e~~i~~~l~~~~--~~diai~GIG~~~~~~~~~~~~~~~~~e~~~~l~~~g 184 (267)
T 3kv1_A 107 LAKKYGGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQAR--KAEFALVGIGDMDENSHMVKLGFFTPKEFVEARLNDG 184 (267)
T ss_dssp HHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHHH--TCSEEEEEEEEHHHHTHHHHTTSSCHHHHHHHHHTTC
T ss_pred HHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHH--HCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHCC
T ss_conf 99982998999827822799999999975868999999998--6999999526888774045416898699999999789
Q ss_pred -C---CCCCEEEECCCCC--C-C-EEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf -6---7431899538998--7-2-1587087888415829999818348999999980898
Q gi|254780505|r 159 -H---TPRSVIAIKDYTS--N-E-QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 159 -~---~~~~~~~~~~~~~--p-~-~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
. ....++-.+.... + . +.|.+++..|.+.++++.++.|++|++++..++.|.-
T Consensus 185 avgdi~~~rf~D~~G~~v~~~~~~r~igi~le~l~~ip~~I~vA~G~~K~~AI~aALrgg~ 245 (267)
T 3kv1_A 185 IVGDIGGFDFFKLDGTDADTLMRGRVIGLEMEDLRQIPNVVAMASESRKALSIMGALRTGV 245 (267)
T ss_dssp EEEEETTTEEEETTSCBCCCGGGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTSC
T ss_pred CEEEEECCEEECCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 5799933403658998955634254211687997479968999678166999999983599