HHSEARCH alignment of GI: 254780505 and SCOP domain: d2o0ma1

Alignment
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]}
Probab=99.86  E-value=9.7e-23  Score=156.52  Aligned_cols=203  Identities=13%  Similarity=0.126  Sum_probs=136.1

Q ss_pred             EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf             899948----9899999999999999999997289779998798646999987876307953238998132100356732
Q gi|254780505|r    5 KLYVAE----NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR   80 (234)
Q Consensus         5 ~i~i~~----~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~   80 (234)
                      +++|.+    +.++..+.+++..++.+...++ ++...|++++|+|+..+++.|.....+|.  ++.+++.++....+++
T Consensus        15 ~~~Vvp~~~~~~~~~~~~l~~~aa~~L~~~l~-~~~~~ig~s~G~T~~~~~~~l~~~~~~~~--~~~~v~l~G~~~~~~~   91 (247)
T d2o0ma1          15 RCIVVAGDSDIQKKVLSDFGDVLTNTLNLLLP-NGENTIAVMGGTTMAMVAENMGSLETEKR--HNLFVPARGGIGEAVS   91 (247)
T ss_dssp             EEEEESSCTTTCTHHHHHHHHHHHHHHHHHCC-SEEEEEEECCSHHHHHHHHTCCCCCCSSE--EEEEEESBSCCCCCGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHCCCCCCCC--CEEEEECCCCCCCCCC
T ss_conf             89996799775199999999999999998701-49869999677799999997140257767--4389944657888877


Q ss_pred             CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCEEEECCCCCCCEEECCC
Q ss_conf             027889997623567763214445887898999999999996315--877648994478877143402786410022156
Q gi|254780505|r   81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLI--HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDT  158 (234)
Q Consensus        81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~  158 (234)
                      ++...+...|.++...+..+++.|....+.....-.++..++...  ...+|++++|||+|||++|+||.++..-..+..
T Consensus        92 ~~~~~~~~~la~~~~~~~~~l~aP~~~~~e~~~~l~~e~~i~~~l~~~~~~Dial~GIG~~~~~~~~~~~~~~~~~~l~~  171 (247)
T d2o0ma1          92 VQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRALHMAARRKMSDDEMVMLKQ  171 (247)
T ss_dssp             GSHHHHHHHHHHHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             68999999999761997000458877877999999867689999984567798999568887433468999899999987


Q ss_pred             CC-----CCCEEEECCCCCC-CEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCC
Q ss_conf             67-----4318995389987-2158708788841582999981834899999998089
Q gi|254780505|r  159 HT-----PRSVIAIKDYTSN-EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGD  210 (234)
Q Consensus       159 ~~-----~~~~~~~~~~~~p-~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~  210 (234)
                      ..     ...++..+..+++ .++||++++.|++++++++++.|++|+++++.++.|.
T Consensus       172 ~~avgdi~~~f~d~~G~~~~~~~~i~i~l~~l~~~~~vi~va~G~~Ka~ai~aAL~gg  229 (247)
T d2o0ma1         172 KNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNA  229 (247)
T ss_dssp             TTCCEEETTEEECTTSCEEEECCCSBCCGGGGGGCSEEEEECCSGGGHHHHHHHHTTS
T ss_pred             CCCHHHHHHCEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHCC
T ss_conf             2775878624145789735776330478789754882999966816799999999669


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Transcriptional regulator EF1965
species: Enterococcus faecalis [TaxId: 1351]