HHSEARCH alignment of GI: 254780505 and SCOP domain: d2okga1

Alignment
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]}
Probab=99.63  E-value=1e-16  Score=119.67  Aligned_cols=197  Identities=10%  Similarity=0.055  Sum_probs=122.5

Q ss_pred             EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCC
Q ss_conf             899948----98999999999999999999972897799987986469999878763--079532389981321003567
Q gi|254780505|r    5 KLYVAE----NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLEN   78 (234)
Q Consensus         5 ~i~i~~----~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~   78 (234)
                      +++|.+    +.++..+.+++..++.+.+.++  +...|++++|+|+..+++.|...  .-+|.-|.++..+++     +
T Consensus        21 ~~~Vv~~~~~~~~~~~~~l~~aaA~~L~~~l~--~~~~igvswG~T~~~~~~~l~~~~~~~~~~~V~l~G~~~~-----~   93 (250)
T d2okga1          21 DAIIVSGDSDQSPWVKKEMGRAAVACMKKRFS--GKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARGGLGE-----D   93 (250)
T ss_dssp             EEEEESSCTTTCTHHHHHHHHHHHHHHHHHCC--SEEEEEECCSHHHHHHHHHCCCCTTCCEEEEEESEEECC-------
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-----C
T ss_conf             89996689887569999999999999998667--9988999587899999998411056887289982178887-----7


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE
Q ss_conf             320278899976235677632144458878989999-----999999963158776489944788771434027864100
Q gi|254780505|r   79 LRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS  153 (234)
Q Consensus        79 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~  153 (234)
                      ..+|...+-..|.++...+..++|.|.-. +.++..     ..+.+.+....  ..|++++|||+++|+++++|.++.--
T Consensus        94 ~~~~~~~i~~~la~~~~~~~~~l~aP~~~-~~~~~~~l~~e~~i~~~l~~~~--~~Dial~GIG~~~~~~~~~~~~~~~~  170 (250)
T d2okga1          94 VKNQANTICAHMAEKASGTYRLLFVPGQL-SQGAYSSIIEEPSVKEVLNTIK--SASMLVHGIGEAKTMAQRRNTPLEDL  170 (250)
T ss_dssp             -CCHHHHHHHHHHHHHTCEECCCCCCCSC-CHHHHHHHHTSHHHHHHHHHHH--TCSEEEECCEEHHHHHHHTTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCHHCCCCCHHHH
T ss_conf             67599999999998729965644674447-9899999986878999999731--69999992686861010578999999


Q ss_pred             EECCCCC-----CCCEEEECCCC-CCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf             2215667-----43189953899-8721587087888415829999818348999999980898
Q gi|254780505|r  154 IALDTHT-----PRSVIAIKDYT-SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD  211 (234)
Q Consensus       154 ~~~~~~~-----~~~~~~~~~~~-~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~  211 (234)
                      ..+....     .-.++..+... .+.++|++++..|++++++++++.|++|++|++.++.|.-
T Consensus       171 ~~l~~~gavgdi~~~f~d~~G~~~~~~r~i~i~l~~l~~~~~~i~vA~G~~K~~Ai~aAL~gg~  234 (250)
T d2okga1         171 KKIDDNDAVTEAFGYYFNADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAYFKKPR  234 (250)
T ss_dssp             HHHHHTTEEEEETTEEEETTSCEEEECSEEECCGGGGGGCSEEEEECCSGGGHHHHHHHTTSCC
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf             9998658127775314257998413441203587896448868999778176999999983699


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Central glycolytic gene regulator CggR
species: Bacillus subtilis [TaxId: 1423]