Query gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 234 No_of_seqs 118 out of 1678 Neff 7.6 Searched_HMMs 13730 Date Wed Jun 1 10:54:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780505.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1vl1a_ c.124.1.1 (A:) 6-phosp 100.0 0 0 364.0 19.2 215 5-230 1-216 (218) 2 d1ne7a_ c.124.1.1 (A:) Glucosa 100.0 0 0 356.7 21.5 226 4-231 1-240 (281) 3 d1fsfa_ c.124.1.1 (A:) Glucosa 100.0 0 0 341.2 23.5 226 4-231 1-240 (266) 4 d2o0ma1 c.124.1.8 (A:95-341) T 99.9 9.7E-23 7.1E-27 156.5 5.1 203 5-210 15-229 (247) 5 d3efba1 c.124.1.8 (A:11-265) S 99.6 1.3E-16 9.6E-21 118.9 7.6 196 10-211 26-239 (255) 6 d2okga1 c.124.1.8 (A:89-338) C 99.6 1E-16 7.3E-21 119.7 5.6 197 5-211 21-234 (250) 7 d2gnpa1 c.124.1.8 (A:56-317) T 99.5 3.2E-14 2.3E-18 104.3 9.0 194 11-211 32-242 (262) 8 d2r5fa1 c.124.1.8 (A:59-316) T 99.1 1.7E-09 1.3E-13 75.3 13.7 195 11-211 30-243 (258) 9 d2q4oa1 c.129.1.1 (A:8-190) Hy 81.5 1.5 0.00011 20.5 5.7 36 98-136 104-140 (183) 10 d1t35a_ c.129.1.1 (A:) Hypothe 80.4 1.4 0.0001 20.6 4.9 38 98-137 99-136 (179) 11 d1ydhb_ c.129.1.1 (B:) Hypothe 79.3 1.7 0.00013 20.1 5.3 23 98-120 100-122 (181) 12 d1weha_ c.129.1.1 (A:) Hypothe 64.4 2.3 0.00016 19.4 2.8 21 99-119 100-120 (171) 13 d1zuna1 c.26.2.2 (A:1-211) Sul 55.8 5.5 0.0004 17.0 5.6 54 20-73 12-66 (211) 14 d1rcua_ c.129.1.1 (A:) Hypothe 49.5 7 0.00051 16.4 5.4 82 31-118 32-118 (170) 15 d1ni5a1 c.26.2.5 (A:0-226) tRN 47.3 7.5 0.00055 16.2 8.4 106 27-135 6-115 (227) 16 d1weka_ c.129.1.1 (A:) Hypothe 46.5 7.7 0.00056 16.1 6.3 101 30-142 60-169 (208) 17 d1wy5a1 c.26.2.5 (A:1-216) Til 43.1 8.7 0.00064 15.8 8.7 104 30-136 20-133 (216) 18 d1xnga1 c.26.2.1 (A:3-257) NH3 43.1 8.8 0.00064 15.8 4.8 60 10-75 1-62 (255) 19 d1wxia1 c.26.2.1 (A:2-275) NH3 32.2 13 0.00095 14.7 3.9 36 11-50 17-57 (274) 20 d1hv8a1 c.37.1.19 (A:3-210) Pu 31.7 13 0.00097 14.7 6.5 25 31-55 39-63 (208) 21 d1m0sa1 c.124.1.4 (A:1-126,A:1 31.5 13 0.00098 14.7 2.5 25 34-58 19-43 (147) 22 d1kqpa_ c.26.2.1 (A:) NH3-depe 29.6 14 0.0011 14.5 4.6 37 10-48 16-54 (271) 23 d1lk5a1 c.124.1.4 (A:1-130,A:2 29.6 14 0.0011 14.5 3.6 40 13-58 4-43 (149) 24 d2cyja1 c.103.1.1 (A:1-118) Hy 27.1 16 0.0012 14.2 2.5 22 121-142 53-74 (118) 25 d2q4qa1 c.103.1.1 (A:2-122) Hy 25.7 17 0.0012 14.0 2.6 17 126-142 58-74 (121) 26 d2g9na1 c.37.1.19 (A:21-238) I 24.4 18 0.0013 13.9 7.4 26 46-71 138-163 (218) 27 d1xhoa_ d.79.1.2 (A:) Chorisma 24.3 18 0.0013 13.9 2.1 71 10-80 13-84 (112) 28 d2a7ya1 b.34.6.3 (A:1-80) Hypo 23.9 15 0.0011 14.3 1.5 23 126-151 34-56 (80) 29 d2b8na1 c.118.1.1 (A:4-417) Pu 23.2 12 0.00087 15.0 0.9 37 9-46 87-123 (414) 30 d2ftsa3 c.57.1.2 (A:499-653) G 22.8 19 0.0014 13.7 7.4 122 63-203 2-135 (155) 31 d1gpma1 c.26.2.1 (A:208-404) G 22.2 20 0.0014 13.6 3.8 26 195-224 170-195 (197) 32 d1odfa_ c.37.1.6 (A:) Hypothet 20.6 21 0.0016 13.4 6.3 44 32-75 23-72 (286) 33 d1rz3a_ c.37.1.6 (A:) Hypothet 20.6 21 0.0016 13.4 2.9 36 20-56 7-44 (198) No 1 >d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=0 Score=363.98 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=190.6 Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH Q ss_conf 89994898999999999999999999972897799987986469999878763079532389981321003567320278 Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQS 84 (234) Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~ 84 (234) |..||.+.+++...+++.|.+.++++++++++++|+||||+||..+|+.|++..+||+||++|++||||||.+|++||++ T Consensus 1 ~~~i~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~i~lsGG~tp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~ 80 (218) T d1vl1a_ 1 KTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERYVPLDSDQSNFR 80 (218) T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTTSCCCGGGEEEEESEEESSCTTSTTCHHH T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCEECCCCCCCCCHHH T ss_conf 93999777899999999999999999985899899978980599999999834998004899861201136776303699 Q ss_pred HHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCE Q ss_conf 89997623567763214445887898999999999996315877648994478877143402786410022156674318 Q gi|254780505|r 85 FISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSV 164 (234) Q Consensus 85 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~~~~~ 164 (234) +++++|+++..++..+++++....+++++++.|++.+.... ++||+++||||+|||||||||+++... +..+ T Consensus 81 ~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~y~~~i~~~~-~~~Dl~lLG~G~DGHiASlFp~~~~~~-------~~~~ 152 (218) T d1vl1a_ 81 NINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSAT-DQFDLAILGMGPDGHVASIFDLETGNK-------DNLV 152 (218) T ss_dssp HHHHHTTTTSCCCGGGEECCCTTSCHHHHHHHHHHHHHHHC-SSCSEEEECCCTTSCBTTBCSHHHHTC-------SSSE T ss_pred HHHHHHHHHCCCCHHEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCCCCCCC-------CCEE T ss_conf 99987634214542115534665628999998655430235-421588716788886434578764432-------2537 Q ss_pred EEECC-CCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEE Q ss_conf 99538-9987215870878884158299998183489999999808983206089996189996899 Q gi|254780505|r 165 IAIKD-YTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEV 230 (234) Q Consensus 165 ~~~~~-~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V 230 (234) ..+.. +.+|++|||||++.|++|++|+|+++|++|+++++++++++ .|||++|+.|.++.++| T Consensus 153 ~~~~~~~~~~~~RITltl~~i~~ak~i~ll~~G~~K~~~l~~~~~~~---~~Pa~~l~~~~~~~~~~ 216 (218) T d1vl1a_ 153 TFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDT---PLPAYFVRGKEKTVWFV 216 (218) T ss_dssp EECSSBTTTTBCEEEECHHHHTTCSEEEEEEESHHHHHHHHHHHTTC---CCGGGGCCCSSEEEEEE T ss_pred EEECCCCCCCCCEEECCHHHHHCCCEEEEEECCHHHHHHHHHHHCCC---CCCHHHHCCCCCEEEEE T ss_conf 84145558997766357777630177999976889999999996099---98858866799879997 No 2 >d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=0 Score=356.68 Aligned_cols=226 Identities=19% Similarity=0.155 Sum_probs=188.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCC Q ss_conf 289994898999999999999999999-97289779998798646999987876----30795323899813210-0356 Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIG-ITNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLE 77 (234) Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~-i~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~ 77 (234) +||+|++|++++++.+|+.|++.|.+. ..+++.|+|+||||+||..+|+.|++ ..++|+||+||++|||+ +|.+ T Consensus 1 Mkiii~~d~~e~s~~aA~~i~~~I~~~~~~~~~~~~i~lsGGsTP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~~~~d 80 (281) T d1ne7a_ 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRD 80 (281) T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTT T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCEEECCCCC T ss_conf 93899799999999999999999997330568977999799867999999999987526998568699956166217876 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC Q ss_conf 7320278899976235677632144458-878989999999999963158776489944788771434027864100221 Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYY-PQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL 156 (234) Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~ 156 (234) |++||+++++++|+++...+..+++.+. ...+++++++.|++.+... ++||+++||||+||||||||||++...... T Consensus 81 ~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~i~~~--~~~Dl~lLGiG~DGH~AslfP~~~~~~~~~ 158 (281) T d1ne7a_ 81 HPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAA--GGIELFVGGIGPDGHIAFNEPGSSLVSRTR 158 (281) T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHT--TSCSEEEECCCTTCCSTTCCTTCCTTCCSE T ss_pred CHHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEECCCCCCEEEECCCCCCCCCCCE T ss_conf 166699999999762022336554136456788999998899999737--986579853676644663268863434431 Q ss_pred ----CCCC---CCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE Q ss_conf ----5667---431899538998721587087888415829999818348999999980898320608999618999689 Q gi|254780505|r 157 ----DTHT---PRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234) Q Consensus 157 ----~~~~---~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234) +..+ ...+.....+++|++|||||++.|++|++|+|+++|++|+++++++++|+.+..+|||+|+.|+++.++ T Consensus 159 ~~~~~~~t~~~~~~~~~~~~~~~P~~riTltl~~i~~Ak~iill~~G~~Ka~~v~~~l~~~~~~~~PAS~l~~h~~~~~~ 238 (281) T d1ne7a_ 159 VKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFV 238 (281) T ss_dssp EEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEE T ss_pred EEEECHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEE T ss_conf 34404146778888605676789963440589998404269999927547999999972899886684987249987999 Q ss_pred EE Q ss_conf 98 Q gi|254780505|r 230 VH 231 (234) Q Consensus 230 V~ 231 (234) +. T Consensus 239 ~D 240 (281) T d1ne7a_ 239 CD 240 (281) T ss_dssp EE T ss_pred EE T ss_conf 84 No 3 >d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=341.22 Aligned_cols=226 Identities=20% Similarity=0.216 Sum_probs=188.6 Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCC-CCCC Q ss_conf 289994898999999999999999999972-897799987986469999878763----0795323899813210-0356 Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITN-KGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERF-VPLE 77 (234) Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~-~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~-V~~~ 77 (234) +|+++++|.+++++.+|++|++.|++.... ++.|+|+||||+||..+|+.|++. ++||+|++||++|||| +|.+ T Consensus 1 M~iii~~~~~e~~~~aA~~i~~~I~~~~~~~~~~f~ialsGGsTP~~~y~~L~~~~~~~~i~w~~v~~~~~DEr~v~p~~ 80 (266) T d1fsfa_ 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKE 80 (266) T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSSCTT T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCC T ss_conf 90799599999999999999999997330469977999789824999999999777515997356699968830358998 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC Q ss_conf 73202788999762356776321444588-78989999999999963158776489944788771434027864100221 Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL 156 (234) Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~ 156 (234) +++||+.+++++|+++...+..+++.+.. ..+.++.++.|++.+... ++||+++||||+|||+||||||++...... T Consensus 81 ~~~s~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dl~lLGiG~DGH~AslfP~~~~~~~~~ 158 (266) T d1fsfa_ 81 HPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSY--GKIHLFMGGVGNDGHIAFNEPASSLASRTR 158 (266) T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHH--CCCSEEEECCCTTSCCTTCCTTCCTTCCSE T ss_pred CHHHHHHHHHHHHHCCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEECCCCCCCCCCCE T ss_conf 367789998752000035658874315677665899999999998743--885699943577863553056663445523 Q ss_pred ----C--CC-CCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE Q ss_conf ----5--66-7431899538998721587087888415829999818348999999980898320608999618999689 Q gi|254780505|r 157 ----D--TH-TPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234) Q Consensus 157 ----~--~~-~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234) . .. ....+.....+.+|++|||||++.|++|++|+++++|++|+++++++++|+.+.+|||++|+.|+++.++ T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~~riTltl~~i~~ak~i~ll~~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~ 238 (266) T d1fsfa_ 159 IKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMV 238 (266) T ss_dssp EEECCHHHHHTTTTTTTTCTTTSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGSSSEEEE T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEE T ss_conf 68604166776522156678989965344589999522058999758789999999973899875762986549987999 Q ss_pred EE Q ss_conf 98 Q gi|254780505|r 230 VH 231 (234) Q Consensus 230 V~ 231 (234) +. T Consensus 239 ~D 240 (266) T d1fsfa_ 239 CD 240 (266) T ss_dssp EC T ss_pred EE T ss_conf 84 No 4 >d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Probab=99.86 E-value=9.7e-23 Score=156.52 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=136.1 Q ss_pred EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC Q ss_conf 899948----9899999999999999999997289779998798646999987876307953238998132100356732 Q gi|254780505|r 5 KLYVAE----NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234) Q Consensus 5 ~i~i~~----~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234) +++|.+ +.++..+.+++..++.+...++ ++...|++++|+|+..+++.|.....+|. ++.+++.++....+++ T Consensus 15 ~~~Vvp~~~~~~~~~~~~l~~~aa~~L~~~l~-~~~~~ig~s~G~T~~~~~~~l~~~~~~~~--~~~~v~l~G~~~~~~~ 91 (247) T d2o0ma1 15 RCIVVAGDSDIQKKVLSDFGDVLTNTLNLLLP-NGENTIAVMGGTTMAMVAENMGSLETEKR--HNLFVPARGGIGEAVS 91 (247) T ss_dssp EEEEESSCTTTCTHHHHHHHHHHHHHHHHHCC-SEEEEEEECCSHHHHHHHHTCCCCCCSSE--EEEEEESBSCCCCCGG T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHCCCCCCCC--CEEEEECCCCCCCCCC T ss_conf 89996799775199999999999999998701-49869999677799999997140257767--4389944657888877 Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCEEEECCCCCCCEEECCC Q ss_conf 027889997623567763214445887898999999999996315--877648994478877143402786410022156 Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLI--HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDT 158 (234) Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~ 158 (234) ++...+...|.++...+..+++.|....+.....-.++..++... ...+|++++|||+|||++|+||.++..-..+.. T Consensus 92 ~~~~~~~~~la~~~~~~~~~l~aP~~~~~e~~~~l~~e~~i~~~l~~~~~~Dial~GIG~~~~~~~~~~~~~~~~~~l~~ 171 (247) T d2o0ma1 92 VQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRALHMAARRKMSDDEMVMLKQ 171 (247) T ss_dssp GSHHHHHHHHHHHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHHHHHHHTTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH T ss_conf 68999999999761997000458877877999999867689999984567798999568887433468999899999987 Q ss_pred CC-----CCCEEEECCCCCC-CEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCC Q ss_conf 67-----4318995389987-2158708788841582999981834899999998089 Q gi|254780505|r 159 HT-----PRSVIAIKDYTSN-EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGD 210 (234) Q Consensus 159 ~~-----~~~~~~~~~~~~p-~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~ 210 (234) .. ...++..+..+++ .++||++++.|++++++++++.|++|+++++.++.|. T Consensus 172 ~~avgdi~~~f~d~~G~~~~~~~~i~i~l~~l~~~~~vi~va~G~~Ka~ai~aAL~gg 229 (247) T d2o0ma1 172 KNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNA 229 (247) T ss_dssp TTCCEEETTEEECTTSCEEEECCCSBCCGGGGGGCSEEEEECCSGGGHHHHHHHHTTS T ss_pred CCCHHHHHHCEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHCC T ss_conf 2775878624145789735776330478789754882999966816799999999669 No 5 >d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Probab=99.65 E-value=1.3e-16 Score=118.92 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=114.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC--CCCCCEEEEECC-CCCCCCCCCCCHHHHH Q ss_conf 8989999999999999999999728977999879864699998787630--795323899813-2100356732027889 Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN--VDWHKVVVTLVD-ERFVPLENLRSNQSFI 86 (234) Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~--~~w~kv~~~~~D-ER~V~~~~~~Sn~~~~ 86 (234) ++.++..+.+++..++.+.+.++. ...|++++|+|+..+++.|.+.. .++.-+.++-.. .+..+..+.++....+ T Consensus 26 ~~~~~~~~~lg~aAA~~l~~~l~~--~~~igvswG~T~~~~~~~l~~~~~~~~~~~v~l~G~~~~~~~~~~~~~~~~~~~ 103 (255) T d3efba1 26 EDEETQLAMMGLHGAQLLDRLLEP--GDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSA 103 (255) T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCT--TCEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH T ss_conf 760689999999999999986789--988999386889999998220034678169981467677757877878999999 Q ss_pred HHHHHCCCCCCCCEEECCCCCC---CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC----CCC Q ss_conf 9976235677632144458878---989999999999963158776489944788771434027864100221----566 Q gi|254780505|r 87 SKFFLQNKAQKASFIPLYYPQK---TIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL----DTH 159 (234) Q Consensus 87 ~~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~----~~~ 159 (234) .+.|..+..... .|.+.+.. +.......+.+.++... .+|++++|||.+||.++++|+........ ... T Consensus 104 a~~~~~~~~~l~--~P~~~~~~~~~~~l~~~~~v~~~l~~~~--~~Dval~GIG~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (255) T d3efba1 104 AAKLKGESHLAD--FPALLDNPLIRNGIMQSQHFKTISAYWD--NLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQ 179 (255) T ss_dssp HHHTTCEECCCC--SBSBCSSHHHHHHHHTSHHHHHHHHHHH--TCSEEEECCBCCC---------CSCHHHHHHHHHTT T ss_pred HHHHCCCCCCCC--CCCCCCCHHHHHHHHHCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC T ss_conf 999289644777--5335799889999985859999999750--599999916878765654456788889999999848 Q ss_pred --CCCCEEEECC------CCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC Q ss_conf --7431899538------998721587087888415829999818348999999980898 Q gi|254780505|r 160 --TPRSVIAIKD------YTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234) Q Consensus 160 --~~~~~~~~~~------~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234) .+-...+.+. .+.+.+.|++++..|+++++++++|.|++|+++++.++.|.- T Consensus 180 avgdi~~~f~d~~G~~v~~~~~~r~i~i~l~~l~~~~~~I~vA~G~~Ka~aI~aaL~gg~ 239 (255) T d3efba1 180 VAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKY 239 (255) T ss_dssp CCEEETTEEECTTSCBCCCTTGGGBCBCCHHHHHTSSEEEEECCCSCSSCHHHHHHHTTS T ss_pred CHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC T ss_conf 299997323767998945667740565588997168838999658166999999983699 No 6 >d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Probab=99.63 E-value=1e-16 Score=119.67 Aligned_cols=197 Identities=10% Similarity=0.055 Sum_probs=122.5 Q ss_pred EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCC Q ss_conf 899948----98999999999999999999972897799987986469999878763--079532389981321003567 Q gi|254780505|r 5 KLYVAE----NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLEN 78 (234) Q Consensus 5 ~i~i~~----~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~ 78 (234) +++|.+ +.++..+.+++..++.+.+.++ +...|++++|+|+..+++.|... .-+|.-|.++..+++ + T Consensus 21 ~~~Vv~~~~~~~~~~~~~l~~aaA~~L~~~l~--~~~~igvswG~T~~~~~~~l~~~~~~~~~~~V~l~G~~~~-----~ 93 (250) T d2okga1 21 DAIIVSGDSDQSPWVKKEMGRAAVACMKKRFS--GKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARGGLGE-----D 93 (250) T ss_dssp EEEEESSCTTTCTHHHHHHHHHHHHHHHHHCC--SEEEEEECCSHHHHHHHHHCCCCTTCCEEEEEESEEECC------- T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-----C T ss_conf 89996689887569999999999999998667--9988999587899999998411056887289982178887-----7 Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE Q ss_conf 320278899976235677632144458878989999-----999999963158776489944788771434027864100 Q gi|254780505|r 79 LRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS 153 (234) Q Consensus 79 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~ 153 (234) ..+|...+-..|.++...+..++|.|.-. +.++.. ..+.+.+.... ..|++++|||+++|+++++|.++.-- T Consensus 94 ~~~~~~~i~~~la~~~~~~~~~l~aP~~~-~~~~~~~l~~e~~i~~~l~~~~--~~Dial~GIG~~~~~~~~~~~~~~~~ 170 (250) T d2okga1 94 VKNQANTICAHMAEKASGTYRLLFVPGQL-SQGAYSSIIEEPSVKEVLNTIK--SASMLVHGIGEAKTMAQRRNTPLEDL 170 (250) T ss_dssp -CCHHHHHHHHHHHHHTCEECCCCCCCSC-CHHHHHHHHTSHHHHHHHHHHH--TCSEEEECCEEHHHHHHHTTCCHHHH T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCHHCCCCCHHHH T ss_conf 67599999999998729965644674447-9899999986878999999731--69999992686861010578999999 Q ss_pred EECCCCC-----CCCEEEECCCC-CCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC Q ss_conf 2215667-----43189953899-8721587087888415829999818348999999980898 Q gi|254780505|r 154 IALDTHT-----PRSVIAIKDYT-SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234) Q Consensus 154 ~~~~~~~-----~~~~~~~~~~~-~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234) ..+.... .-.++..+... .+.++|++++..|++++++++++.|++|++|++.++.|.- T Consensus 171 ~~l~~~gavgdi~~~f~d~~G~~~~~~r~i~i~l~~l~~~~~~i~vA~G~~K~~Ai~aAL~gg~ 234 (250) T d2okga1 171 KKIDDNDAVTEAFGYYFNADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAYFKKPR 234 (250) T ss_dssp HHHHHTTEEEEETTEEEETTSCEEEECSEEECCGGGGGGCSEEEEECCSGGGHHHHHHHTTSCC T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC T ss_conf 9998658127775314257998413441203587896448868999778176999999983699 No 7 >d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Probab=99.51 E-value=3.2e-14 Score=104.31 Aligned_cols=194 Identities=10% Similarity=0.007 Sum_probs=128.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH Q ss_conf 98999999999999999999972897799987986469999878763079532389981321003567320278899976 Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF 90 (234) Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l 90 (234) +.+.+.+.++...++.+...++. + ..|++++|+|+..+++.|.. .++.+++|+.+.. .++..+++.+...+-..| T Consensus 32 ~~~~~~~~l~~~aA~~l~~~l~~-~-~~iGvswG~Tl~~~~~~l~~--~~~~~~~vv~l~G-g~~~~~~~~~~~~i~~~l 106 (262) T d2gnpa1 32 TPTILSERISQVAAGVLRNLIDD-N-MKIGFSWGKSLSNLVDLIHS--KSVRNVHFYPLAG-GPSHIHAKYHVNTLIYEM 106 (262) T ss_dssp CHHHHHHHHHHHHHHHHHHHCCT-T-CEEEECCSHHHHHHHHHCCC--CCCSSCEEEESBC-CCTTSCGGGSHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCC-C-CEEEEECCHHHHHHHHHHCC--CCCCCCEEEECCC-CCCCCCCCCCHHHHHHHH T ss_conf 76789999999999999984778-9-88999278889999997076--5667745994057-767776656899999999 Q ss_pred HCCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE----EECCC--C Q ss_conf 235677632144458878989999-----999999963158776489944788771434027864100----22156--6 Q gi|254780505|r 91 LQNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS----IALDT--H 159 (234) Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~----~~~~~--~ 159 (234) -.+...+..++|.|.-..+.+... ..+.+.+... ...|++++|+|..+|.+++++..-.-. ..... . T Consensus 107 A~~~~~~~~~l~aP~~~~s~~~~~~l~~~~~i~~v~~~~--~~~dvai~GIG~~~~~~~~~~~~~~~~~~~~~l~~~gav 184 (262) T d2gnpa1 107 SRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSW--KDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTV 184 (262) T ss_dssp HHHHTCEECCCCSCSBCSSHHHHHHHHTSTTTHHHHHHT--TSCSEEEECCEECSHHHHHTTTTTSCHHHHHHHHHTTCC T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHH--HCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCH T ss_conf 999499700445776779999999998586999999997--338989994456777664023789998999999976818 Q ss_pred CCCCEEEECCCCC------CCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC Q ss_conf 7431899538998------721587087888415829999818348999999980898 Q gi|254780505|r 160 TPRSVIAIKDYTS------NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234) Q Consensus 160 ~~~~~~~~~~~~~------p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234) .+-...+.+.... +.+.|++++..|+++++++.++.|++|+++++.++.|+- T Consensus 185 Gdi~g~f~d~~G~~v~~~~~~r~I~i~l~~lr~~~~~I~vA~G~~K~~aI~aAL~gg~ 242 (262) T d2gnpa1 185 GEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANL 242 (262) T ss_dssp EEETTEEECTTSCCCCHHHHTTBCBCCHHHHTTSSEEEEECCSGGGHHHHHHHHHTTC T ss_pred HHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC T ss_conf 8999766167899866766641431687897168978999668154999999983699 No 8 >d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Probab=99.10 E-value=1.7e-09 Score=75.27 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=115.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 9899999999999999999997289779998-798646999987876307953238998132100356732027889997 Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIAL-SGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKF 89 (234) Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~l-sGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ 89 (234) +.+...+.++...+..+.+.++++ -.|++ ++|+|...+.+.|.........++|..+-- .++.+ ...+...+-.. T Consensus 30 ~~~~~~~~v~~~aA~~L~~~l~~~--~~igv~~wG~Tl~~~~~~l~~~~~~~~~~~vV~l~G-~~~~~-~~~~~~~i~~~ 105 (258) T d2r5fa1 30 DEESIKQAIGSAAAHYLETSLSAQ--DHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLG-GVGNK-GAFEATLLTQR 105 (258) T ss_dssp CHHHHHHHHHHHHHHHHHHHCCTT--CEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEE-CCC---CHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC--CEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEECCC-CCCCC-CCCCHHHHHHH T ss_conf 757999999999999999862659--879998368089999987163556678805995678-87877-77589999999 Q ss_pred HHCCCCCCCCEEECCCCCCCHH-----HHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEE-ECCCC-CCC Q ss_conf 6235677632144458878989-----9999999999631587764899447887714340278641002-21566-743 Q gi|254780505|r 90 FLQNKAQKASFIPLYYPQKTIE-----EAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSI-ALDTH-TPR 162 (234) Q Consensus 90 ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~-~~~~~-~~~ 162 (234) |-.+...+..++|.|.--.+.+ .....+.+-++... ..|++++|+|.-++..++++....++. .+..- ... T Consensus 106 lA~~~~~~~~~l~aP~~~~s~~~~~~l~~~~~i~~vl~~~~--~~dial~GIG~~~~~~~~~~~~~~~~~~~~~~l~~~g 183 (258) T d2r5fa1 106 LATLLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHRFD--SITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERG 183 (258) T ss_dssp HHHHHTSCEECCCCC----------CCHHHHHHHHHHHHTT--TCCEEEECCEECC-------------------CTTTT T ss_pred HHHHCCCCEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHCC T ss_conf 99873993670367223689999999985846999999982--5999999237887654111157889999999999889 Q ss_pred C-----EEEECCCCC----C-CEE-EEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC Q ss_conf 1-----899538998----7-215-87087888415829999818348999999980898 Q gi|254780505|r 163 S-----VIAIKDYTS----N-EQR-MTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234) Q Consensus 163 ~-----~~~~~~~~~----p-~~R-ITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234) . ..+.+.... + .+| |++++..|.++++++.++.|++|+++++.++.|.- T Consensus 184 AvGdi~~~f~d~~G~~v~~~~~~r~i~i~l~~l~~i~~~I~vA~G~~K~~aI~aAl~gg~ 243 (258) T d2r5fa1 184 AVGDICLRYFDAQGKPVLEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIKGALLGGY 243 (258) T ss_dssp CCEEETTEEECTTSCBC-------CEECCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTC T ss_pred EEEHHHHHHCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC T ss_conf 025276434167899976665431431687896568858999558165999999982699 No 9 >d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=81.51 E-value=1.5 Score=20.55 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=21.5 Q ss_pred CCEEECCCCCCCHHHHHHHHHHH-HHHHCCCCCCEEEECC Q ss_conf 32144458878989999999999-9631587764899447 Q gi|254780505|r 98 ASFIPLYYPQKTIEEAIRIANEK-ICQLIHFPFDVVVLGM 136 (234) Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~lLGi 136 (234) .-++-+|..-.+.+|....+... +... .. -+++|.. T Consensus 104 dafIvlPGG~GTLdEl~e~lt~~ql~~~-~k--piiiln~ 140 (183) T d2q4oa1 104 DAFIALPGGYGTLEELLEVITWAQLGIH-DK--PVGLLNV 140 (183) T ss_dssp SEEEECSCCHHHHHHHHHHHHHHHHTSC-CC--CEEEECG T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCCC-CC--CEEEEEC T ss_conf 4588807730149999999999983677-88--8288606 No 10 >d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Probab=80.43 E-value=1.4 Score=20.62 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=22.1 Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC Q ss_conf 3214445887898999999999996315877648994478 Q gi|254780505|r 98 ASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMG 137 (234) Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG 137 (234) .-++-++..-.+.+|-...+... ++...+.-+++++.. T Consensus 99 dafI~lPGG~GTLdEl~e~l~~~--ql~~~~kPiil~n~~ 136 (179) T d1t35a_ 99 DGFISMPGGFGTYEELFEVLCWA--QIGIHQKPIGLYNVN 136 (179) T ss_dssp SEEEECSCCHHHHHHHHHHHHTT--SCSSCCCCEEEECGG T ss_pred CEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCEEEECCC T ss_conf 73799467664255799999999--962558984762577 No 11 >d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=79.33 E-value=1.7 Score=20.10 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=14.8 Q ss_pred CCEEECCCCCCCHHHHHHHHHHH Q ss_conf 32144458878989999999999 Q gi|254780505|r 98 ASFIPLYYPQKTIEEAIRIANEK 120 (234) Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~ 120 (234) .-++-+|..-.+.+|....+... T Consensus 100 dafIvlPGG~GTLdEl~e~l~l~ 122 (181) T d1ydhb_ 100 EAFIALPGGYGTMEELLEMITWS 122 (181) T ss_dssp SEEEECSCSHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCHHHHHHHHHHHH T ss_conf 06889377430378999999998 No 12 >d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Probab=64.37 E-value=2.3 Score=19.41 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=15.2 Q ss_pred CEEECCCCCCCHHHHHHHHHH Q ss_conf 214445887898999999999 Q gi|254780505|r 99 SFIPLYYPQKTIEEAIRIANE 119 (234) Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ 119 (234) -++-++..-.+.+|....+.. T Consensus 100 a~I~lPGG~GTLdEl~e~~~~ 120 (171) T d1weha_ 100 GYLALPGGVGTLAELVLAWNL 120 (171) T ss_dssp EEEECSCCHHHHHHHHHHHHH T ss_pred CEEECCCCCCHHHHHHHHHHH T ss_conf 235627763428999999999 No 13 >d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Probab=55.81 E-value=5.5 Score=17.03 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEECCCCC Q ss_conf 9999999999997289779998798646999987876307-95323899813210 Q gi|254780505|r 20 AKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINV-DWHKVVVTLVDERF 73 (234) Q Consensus 20 a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~-~w~kv~~~~~DER~ 73 (234) .+..++.++.+.++.+...++.|||.--..++..+.+... .-..+.++++|..+ T Consensus 12 ~~~ai~~ir~~~~~~d~i~va~SGGKDS~vlL~L~~~~~~~~~~~~~~v~~d~~~ 66 (211) T d1zuna1 12 EAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 66 (211) T ss_dssp HHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSC T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC T ss_conf 9999999999999669979995785788999999986323336872289845755 No 14 >d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Probab=49.50 E-value=7 Score=16.41 Aligned_cols=82 Identities=21% Similarity=0.200 Sum_probs=34.4 Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEECCCCC-CCCCCCC--CHHHH-HHHHHHCCCCCCCCEEECCC Q ss_conf 972897799987986469999878763079-5323899813210-0356732--02788-99976235677632144458 Q gi|254780505|r 31 ITNKGTASIALSGGLTPRFFLEELSIINVD-WHKVVVTLVDERF-VPLENLR--SNQSF-ISKFFLQNKAQKASFIPLYY 105 (234) Q Consensus 31 i~~~~~~~i~lsGGstp~~~y~~L~~~~~~-w~kv~~~~~DER~-V~~~~~~--Sn~~~-~~~~ll~~~~~~~~~~~~~~ 105 (234) +.++|. ++++||.. ++-++.++.-.. =-++.-+.-||+. -+..+.. ....+ -|+.++-.. ..-++-++. T Consensus 32 la~~g~--~V~~GG~~--GlM~ava~ga~~~gg~viGilP~~~~~n~~~~~~i~~~~~~~~Rk~~m~~~--sda~I~lPG 105 (170) T d1rcua_ 32 LAKKGY--LVFNGGRD--GVMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQMRSFVLLRN--ADVVVSIGG 105 (170) T ss_dssp HHHTTC--EEEECCSS--HHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTT--CSEEEEESC T ss_pred HHHCCC--EEECCCCC--CHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHC--CCCEEEECC T ss_conf 998799--89878854--787999998986388643056333226765330588634345667888532--442156332 Q ss_pred CCCCHHHHHHHHH Q ss_conf 8789899999999 Q gi|254780505|r 106 PQKTIEEAIRIAN 118 (234) Q Consensus 106 ~~~~~~~~~~~~~ 118 (234) ...+.+|....+. T Consensus 106 G~GTl~El~~a~~ 118 (170) T d1rcua_ 106 EIGTAIEILGAYA 118 (170) T ss_dssp CHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 4554999999999 No 15 >d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=47.31 E-value=7.5 Score=16.20 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=49.2 Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC Q ss_conf 9999972897799987986469999878763--07953238998132100356732027889997623567763214445 Q gi|254780505|r 27 LSIGITNKGTASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY 104 (234) Q Consensus 27 i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~ 104 (234) +...+..+....|++|||.--..++..|.+. ...--++..+.+|..+=+ ++.. -...+++. ......+....... T Consensus 6 l~~~l~~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~-~s~~-~~~~~~~~-~~~~~i~~~i~~~~ 82 (227) T d1ni5a1 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA-NADA-WVTHCENV-CQQWQVPLVVERVQ 82 (227) T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS-SHHH-HHHHHHHH-HHHTTCCEEEECCC T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-CHHH-HHHHHHHH-HHHCCCCCEEEECC T ss_conf 655428899689996384999999999999987588956999986789875-2144-58999999-75415763266313 Q ss_pred --CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEC Q ss_conf --8878989999999999963158776489944 Q gi|254780505|r 105 --YPQKTIEEAIRIANEKICQLIHFPFDVVVLG 135 (234) Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLG 135 (234) ......+..++++............+.+++| T Consensus 83 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~g 115 (227) T d1ni5a1 83 LAQEGLGIEAQARQARYQAFARTLLPGEVLVTA 115 (227) T ss_dssp CCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 333443036689999999888775203899999 No 16 >d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Probab=46.53 E-value=7.7 Score=16.13 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=44.6 Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHC--CCCCCEEEE---ECCCCCC-CCCCCC--CHHHHHHHHHHCCCCCCCCEE Q ss_conf 99728977999879864699998787630--795323899---8132100-356732--027889997623567763214 Q gi|254780505|r 30 GITNKGTASIALSGGLTPRFFLEELSIIN--VDWHKVVVT---LVDERFV-PLENLR--SNQSFISKFFLQNKAQKASFI 101 (234) Q Consensus 30 ~i~~~~~~~i~lsGGstp~~~y~~L~~~~--~~w~kv~~~---~~DER~V-~~~~~~--Sn~~~~~~~ll~~~~~~~~~~ 101 (234) .|.++|.- ++.||. + ++-.+.++.- -.. ++.=+ ..+++-. +..+.. ......|+.++-.. ..-++ T Consensus 60 ~La~~g~~--lv~GGg-~-GlMgava~ga~~~gG-~viGi~~~~~~~~~~~~~~~~~i~~~~~~~Rk~~m~~~--sDafI 132 (208) T d1weka_ 60 ALAEAGFG--VVTGGG-P-GVMEAVNRGAYEAGG-VSVGLNIELPHEQKPNPYQTHALSLRYFFVRKVLFVRY--AVGFV 132 (208) T ss_dssp HHHHHTCE--EEECSC-S-HHHHHHHHHHHHTTC-CEEEEEECCTTCCCCCSCCSEEEEESCHHHHHHHHHHT--EEEEE T ss_pred HHHHCCCE--EEECCC-C-HHHHHHHHHHHHCCC-CEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHC--CCCEE T ss_conf 99957452--786788-3-277798732343288-50233233211001344431378626288999999727--87469 Q ss_pred ECCCCCCCHHHHHHHHHHHHH-HHCCCCCCEEEECCCCCCCE Q ss_conf 445887898999999999996-31587764899447887714 Q gi|254780505|r 102 PLYYPQKTIEEAIRIANEKIC-QLIHFPFDVVVLGMGIDGHT 142 (234) Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~lLGiG~DGH~ 142 (234) -++....+.+|-...+....- .....| +++++ +|+- T Consensus 133 ~lPGG~GTLdEl~e~lt~~ql~~~~~kP--Iil~~---~gfw 169 (208) T d1weka_ 133 FLPGGFGTLDELSEVLVLLQTEKVHRFP--VFLLD---RGYW 169 (208) T ss_dssp ECSCCHHHHHHHHHHHHHHHTTSSCCCC--EEEEC---HHHH T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCCC--CCCCC---CCHH T ss_conf 9357640578999999998615667676--20468---7477 No 17 >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Probab=43.14 E-value=8.7 Score=15.81 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=53.1 Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC--- Q ss_conf 9972897799987986469999878763--07953238998132100356732027889997623567763214445--- Q gi|254780505|r 30 GITNKGTASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY--- 104 (234) Q Consensus 30 ~i~~~~~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~--- 104 (234) .++......||+|||.--..+...|.+. ...+..+....+|..+-+. + +.....+++. ......+....... T Consensus 20 l~~~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~-s-~~~~~~~~~~-~~~l~i~~~i~~~~~~~ 96 (216) T d1wy5a1 20 IFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRES-A-ERDEEFCKEF-AKERNMKIFVGKEDVRA 96 (216) T ss_dssp SCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTH-H-HHHHHHHHHH-HHHHTCCEEEEECCHHH T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-H-HHHHHHHHHH-HHHHHHHHHHHCCCHHH T ss_conf 5689986999967859999999999999876687708888751123410-3-3213478999-98620001021021011 Q ss_pred ---CCCCCHHHHHH--HHHHHHHHHCCCCCCEEEECC Q ss_conf ---88789899999--999999631587764899447 Q gi|254780505|r 105 ---YPQKTIEEAIR--IANEKICQLIHFPFDVVVLGM 136 (234) Q Consensus 105 ---~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~lLGi 136 (234) ....+.+.+++ +|..........++|.+++|- T Consensus 97 ~~~~~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH 133 (216) T d1wy5a1 97 FAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAH 133 (216) T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCC T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 1137764457879999988764111122312157652 No 18 >d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} Probab=43.06 E-value=8.8 Score=15.80 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=33.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEECCCCCCC Q ss_conf 89899999999999999999997289779998798--6469999878763079532389981321003 Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGG--LTPRFFLEELSIINVDWHKVVVTLVDERFVP 75 (234) Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGG--stp~~~y~~L~~~~~~w~kv~~~~~DER~V~ 75 (234) .|++.+...+.+.|-+.++.. ....+.+++||| ||... .|+.+-. -++++-..++..+.. T Consensus 1 ~d~~~~~~~l~~~l~~~~~~~--G~k~vvvglSGGVDSsv~A---~L~~~a~-~~~v~~v~mp~~~~~ 62 (255) T d1xnga1 1 KDYQKLIVYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVG---VLCQKVF-KENAHALLMPSSVSM 62 (255) T ss_dssp CCHHHHHHHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHH---HHHHHHH-GGGEEEEECCCSSSC T ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHH---HHHHHHH-HHHCCHHCCCCHHCC T ss_conf 988999999999999999982--9982999787988999999---9999975-651211127512145 No 19 >d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} Probab=32.21 E-value=13 Score=14.74 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=20.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEECCC--CCHHHH Q ss_conf 989999999999999999999728---9779998798--646999 Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNK---GTASIALSGG--LTPRFF 50 (234) Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~---~~~~i~lsGG--stp~~~ 50 (234) ++++..+.+...+ ++-++++ ..++++|||| |+.... T Consensus 17 ~~ee~i~~~v~~L----~dy~~k~~~~k~vVvGlSGGIDSav~A~ 57 (274) T d1wxia1 17 NAEEEIRRSVDFL----KSYLQTYPFIKSLVLGISGGQDSTLAGK 57 (274) T ss_dssp CHHHHHHHHHHHH----HHHHHHSTTCCEEEEECCSSHHHHHHHH T ss_pred CHHHHHHHHHHHH----HHHHHHCCCCCEEEEECCCCHHHHHHHH T ss_conf 9899999999999----9999983999859998978788999999 No 20 >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=31.74 E-value=13 Score=14.69 Aligned_cols=25 Identities=4% Similarity=-0.126 Sum_probs=10.4 Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHH Q ss_conf 9728977999879864699998787 Q gi|254780505|r 31 ITNKGTASIALSGGLTPRFFLEELS 55 (234) Q Consensus 31 i~~~~~~~i~lsGGstp~~~y~~L~ 55 (234) +..+....+.-++|+--...|.... T Consensus 39 l~g~~d~iv~a~TGsGKT~~~~l~~ 63 (208) T d1hv8a1 39 LNDEYNIVAQARTGSGKTASFAIPL 63 (208) T ss_dssp HHTCSEEEEECCSSSSHHHHHHHHH T ss_pred HCCCCCEEEECHHCCCCCCEEECCC T ss_conf 8499974644100344440020333 No 21 >d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Probab=31.52 E-value=13 Score=14.67 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=19.9 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHC Q ss_conf 8977999879864699998787630 Q gi|254780505|r 34 KGTASIALSGGLTPRFFLEELSIIN 58 (234) Q Consensus 34 ~~~~~i~lsGGstp~~~y~~L~~~~ 58 (234) ++.-.|+|-+|+|...+.+.|...+ T Consensus 19 ~dg~~I~LdsGTT~~~la~~L~~~~ 43 (147) T d1m0sa1 19 KADRIVGVGSGSTVNCFIEALGTIK 43 (147) T ss_dssp CTTSEEEECCSHHHHHHHHHHHTTG T ss_pred CCCCEEEECCCHHHHHHHHHHHHHC T ss_conf 9999999888636999999987515 No 22 >d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} Probab=29.60 E-value=14 Score=14.47 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=21.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHH Q ss_conf 89899999999999999999997289779998798--6469 Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGG--LTPR 48 (234) Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGG--stp~ 48 (234) -|+++........+-+.++++ ....+.|+|||| |+-. T Consensus 16 ~d~~e~i~~~v~~lrdy~~ks--g~~gvvvglSGGIDSAv~ 54 (271) T d1kqpa_ 16 IDPKQEIEDRVNFLKQYVKKT--GAKGFVLGISGGQDSTLA 54 (271) T ss_dssp CCHHHHHHHHHHHHHHHHHHH--TCCEEEEECCSSHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHH T ss_conf 998999999999999999994--998199979888889999 No 23 >d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=29.59 E-value=14 Score=14.47 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC Q ss_conf 9999999999999999999728977999879864699998787630 Q gi|254780505|r 13 KRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN 58 (234) Q Consensus 13 ~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~ 58 (234) +|.=+.+|+..++.+ ++.-+|.|-+|+|...+.+.|.+.. T Consensus 4 ~E~K~~IA~~Aa~lI------~dg~~I~ldsGTT~~~la~~L~~~~ 43 (149) T d1lk5a1 4 EEMKKIAAKEALKFI------EDDMVIGLGTGSTTAYFIKLLGEKL 43 (149) T ss_dssp HHHHHHHHHHHGGGC------CTTCEEEECCSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC------CCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 999999999999768------9999999888608999999997753 No 24 >d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]} Probab=27.12 E-value=16 Score=14.20 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=15.8 Q ss_pred HHHHCCCCCCEEEECCCCCCCE Q ss_conf 9631587764899447887714 Q gi|254780505|r 121 ICQLIHFPFDVVVLGMGIDGHT 142 (234) Q Consensus 121 ~~~~~~~~~Dl~lLGiG~DGH~ 142 (234) +..+....+|++++|.|..+.+ T Consensus 53 l~~~l~~~peilliGtG~~~~~ 74 (118) T d2cyja1 53 LEKYLVEDFDVLLVGTGIYGML 74 (118) T ss_dssp HHTTTTSCCSEEEEEECTTCCC T ss_pred HHHHHCCCCCEEEEECCCCCCC T ss_conf 9998525997899934887667 No 25 >d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]} Probab=25.70 E-value=17 Score=14.04 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.4 Q ss_pred CCCCCEEEECCCCCCCE Q ss_conf 87764899447887714 Q gi|254780505|r 126 HFPFDVVVLGMGIDGHT 142 (234) Q Consensus 126 ~~~~Dl~lLGiG~DGH~ 142 (234) ...+|++++|.|..+.. T Consensus 58 ~~~peilliGtG~~~~~ 74 (121) T d2q4qa1 58 EKGVQTLVIGRGMSEAL 74 (121) T ss_dssp TTCCSEEEEECCSSCCS T ss_pred CCCCCEEEECCCCCCCC T ss_conf 35999999868987540 No 26 >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Probab=24.36 E-value=18 Score=13.89 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=8.8 Q ss_pred CHHHHHHHHHHHCCCCCCEEEEECCC Q ss_conf 46999987876307953238998132 Q gi|254780505|r 46 TPRFFLEELSIINVDWHKVVVTLVDE 71 (234) Q Consensus 46 tp~~~y~~L~~~~~~w~kv~~~~~DE 71 (234) ||..+++.+.+....++++.++-+|| T Consensus 138 TP~rl~~~l~~~~~~~~~l~~lVlDE 163 (218) T d2g9na1 138 TPGRVFDMLNRRYLSPKYIKMFVLDE 163 (218) T ss_dssp CHHHHHHHHHTTSSCSTTCCEEEEES T ss_pred CCHHHHHHHHCCCCCCCCCEEEEEEE T ss_conf 78157778862883246534898640 No 27 >d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]} Probab=24.26 E-value=18 Score=13.88 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=42.3 Q ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC Q ss_conf 89899999999999999999-997289779998798646999987876307953238998132100356732 Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSI-GITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234) Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234) +++++..++..+.+.+.++. .|+...-.++.++.-.--...|.+.+.+.+.|..|-++-.-|=-||-.=+. T Consensus 13 n~~e~I~~at~eLl~~ii~~N~l~~edi~Sv~FT~T~DL~a~FPA~aaR~lG~~~Vpl~c~~E~~V~gsL~r 84 (112) T d1xhoa_ 13 NTADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTKDLDAAFPAIAARNMGWTSTALMCMNEIDVPGSLEK 84 (112) T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECTTCCSSCTHHHHHHTTCTTSEEEEEECCCCTTSCCS T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 899999999999999999975999889899999866754542879999556997605001677878998463 No 28 >d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]} Probab=23.90 E-value=15 Score=14.31 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.5 Q ss_pred CCCCCEEEECCCCCCCEEEECCCCCC Q ss_conf 87764899447887714340278641 Q gi|254780505|r 126 HFPFDVVVLGMGIDGHTASFFPKGDT 151 (234) Q Consensus 126 ~~~~Dl~lLGiG~DGH~ASlFP~~~~ 151 (234) .+|+.+=+ .+|||.+..|||.+. T Consensus 34 ~PPY~VRw---~ddGHe~lv~PGpDa 56 (80) T d2a7ya1 34 SPPYVVRW---LVNGHETTVYPGSDA 56 (80) T ss_dssp CSCEEEEE---TTTTEEEEECCCSSC T ss_pred CCCEEEEE---CCCCCEEEEECCCCE T ss_conf 99988895---789927888559980 No 29 >d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]} Probab=23.24 E-value=12 Score=14.98 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=27.3 Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC Q ss_conf 48989999999999999999999728977999879864 Q gi|254780505|r 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLT 46 (234) Q Consensus 9 ~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGst 46 (234) ++-+++-+-.+++.+.+.++++ ..+....+.+|||.| T Consensus 87 HP~Pd~~s~~Aa~~il~~~~~~-~~~Dlvl~LISGGgS 123 (414) T d2b8na1 87 HPVPDENTIKTTRRVLELVDQL-NENDTVLFLLSGGGS 123 (414) T ss_dssp SSSCCHHHHHHHHHHHHHHSSC-CTTCEEEEEECTTHH T ss_pred CCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCC T ss_conf 9999877999999999999648-988768998508854 No 30 >d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=22.83 E-value=19 Score=13.70 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=56.7 Q ss_pred CEEEE-ECCCCCCCCC-------CCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 23899-8132100356-------732027889997623567763214445887898999999999996315877648994 Q gi|254780505|r 63 KVVVT-LVDERFVPLE-------NLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVL 134 (234) Q Consensus 63 kv~~~-~~DER~V~~~-------~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lL 134 (234) ||-++ -+|| +|+++ -.+||..++...|-+.. .......... .+.++-.+..++.+.. .|+++. T Consensus 2 rV~iistG~E-l~~~~~~~~~g~i~dsN~~~l~~~l~~~G-~~v~~~~~v~--Dd~~~i~~~l~~~~~~-----~Dliit 72 (155) T d2ftsa3 2 VVAVMSTGNE-LLNPEDDLLPGKIRDSNRSTLLATIQEHG-YPTINLGIVG--DNPDDLLNALNEGISR-----ADVIIT 72 (155) T ss_dssp CEEEEEECTT-EECTTSCCCTTCEECCHHHHHHHHHHTTT-CCEEEEEEEC--SSHHHHHHHHHHHHHH-----CSEEEE T ss_pred EEEEEECCHH-CCCCCCCCCCCCEEECHHHHHHHHHCCCC-CCEEEEEEEC--CCHHHHHHHHHHHHCC-----CCEEEE T ss_conf 8999968831-06899869999586061999999733456-5517888844--7614779999986504-----677998 Q ss_pred ----CCCCCCCEEEECCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHH Q ss_conf ----478877143402786410022156674318995389987215870878884158299998183489999 Q gi|254780505|r 135 ----GMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVL 203 (234) Q Consensus 135 ----GiG~DGH~ASlFP~~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al 203 (234) |+|.+-++....-. .+.. .-.-.-+... +.+| .+++.-.....++.+|...|.-.+..+ T Consensus 73 tGG~s~g~~D~~~~~l~~--~~~~----~~~f~~v~~~-PG~p---~~~g~~~~~~~~~~v~~LPG~P~a~~~ 135 (155) T d2ftsa3 73 SGGVSMGEKDYLKQVLDI--DLHA----QIHFGRVFMK-PGLP---TTFATLDIDGVRKIIFALPGNPVSAVV 135 (155) T ss_dssp ESCCSSSCCHHHHHHHHT--TTCC----EEEESEEECB-SCTT---CEEEEEEETTEEEEEEEECSSHHHHHH T ss_pred ECCCCCCCCHHHHHHHHH--HCCE----EEEECHHHHH-HCCH---HHEEECCCCCCCCEEEECCCCCHHHHH T ss_conf 346667740455999973--0230----3553213443-0222---122431457887658977998099999 No 31 >d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Probab=22.16 E-value=20 Score=13.62 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=17.0 Q ss_pred ECHHHHHHHHHHHCCCCCCCCCHHHHHHCC Q ss_conf 183489999999808983206089996189 Q gi|254780505|r 195 EGTQKKHVLEKAISGDDALEMPIRAILWNA 224 (234) Q Consensus 195 ~G~~K~~al~~~l~~~~~~~~Pas~ll~~~ 224 (234) .+=.|.++.+-+.+-+ +|-+.+-.+| T Consensus 170 ~~l~K~eV~~lA~~lg----lP~~i~~~~p 195 (197) T d1gpma1 170 KELFKDEVRKIGLELG----LPYDMLYRHP 195 (197) T ss_dssp TTCCHHHHHHHHHHTT----CCHHHHTSCC T ss_pred CCCCHHHHHHHHHHCC----CCHHHHCCCC T ss_conf 4886999999999829----8999948999 No 32 >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=20.64 E-value=21 Score=13.43 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=26.5 Q ss_pred HHCCCEEEEECCCC-CHHHHH-----HHHHHHCCCCCCEEEEECCCCCCC Q ss_conf 72897799987986-469999-----878763079532389981321003 Q gi|254780505|r 32 TNKGTASIALSGGL-TPRFFL-----EELSIINVDWHKVVVTLVDERFVP 75 (234) Q Consensus 32 ~~~~~~~i~lsGGs-tp~~~y-----~~L~~~~~~w~kv~~~~~DER~V~ 75 (234) ..+..+.||++||+ |.+..+ +.|.+..-.-.++.++-.|..+.+ T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t 72 (286) T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT 72 (286) T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC T ss_conf 89998899837998788999999999999987277860676356777788 No 33 >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Probab=20.64 E-value=21 Score=13.43 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHH-HHHHH Q ss_conf 99999999999972897799987986-469999-87876 Q gi|254780505|r 20 AKKVAEQLSIGITNKGTASIALSGGL-TPRFFL-EELSI 56 (234) Q Consensus 20 a~~i~~~i~~~i~~~~~~~i~lsGGs-tp~~~y-~~L~~ 56 (234) .+.+.+.+. +++.++.+.|+++||+ +.+..+ +.|.+ T Consensus 7 ~~~~~~~~~-~~~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198) T d1rz3a_ 7 IDFLCKTIL-AIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198) T ss_dssp HHHHHHHHH-TSCCSSSEEEEEEECTTSSHHHHHHHHHH T ss_pred HHHHHHHHH-HCCCCCCEEEEEECCCCCCHHHHHHHHHH T ss_conf 999999998-52679988999789887899999999999 Done!