Query gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 234
No_of_seqs 118 out of 1678
Neff 7.6
Searched_HMMs 13730
Date Wed Jun 1 10:54:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780505.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vl1a_ c.124.1.1 (A:) 6-phosp 100.0 0 0 364.0 19.2 215 5-230 1-216 (218)
2 d1ne7a_ c.124.1.1 (A:) Glucosa 100.0 0 0 356.7 21.5 226 4-231 1-240 (281)
3 d1fsfa_ c.124.1.1 (A:) Glucosa 100.0 0 0 341.2 23.5 226 4-231 1-240 (266)
4 d2o0ma1 c.124.1.8 (A:95-341) T 99.9 9.7E-23 7.1E-27 156.5 5.1 203 5-210 15-229 (247)
5 d3efba1 c.124.1.8 (A:11-265) S 99.6 1.3E-16 9.6E-21 118.9 7.6 196 10-211 26-239 (255)
6 d2okga1 c.124.1.8 (A:89-338) C 99.6 1E-16 7.3E-21 119.7 5.6 197 5-211 21-234 (250)
7 d2gnpa1 c.124.1.8 (A:56-317) T 99.5 3.2E-14 2.3E-18 104.3 9.0 194 11-211 32-242 (262)
8 d2r5fa1 c.124.1.8 (A:59-316) T 99.1 1.7E-09 1.3E-13 75.3 13.7 195 11-211 30-243 (258)
9 d2q4oa1 c.129.1.1 (A:8-190) Hy 81.5 1.5 0.00011 20.5 5.7 36 98-136 104-140 (183)
10 d1t35a_ c.129.1.1 (A:) Hypothe 80.4 1.4 0.0001 20.6 4.9 38 98-137 99-136 (179)
11 d1ydhb_ c.129.1.1 (B:) Hypothe 79.3 1.7 0.00013 20.1 5.3 23 98-120 100-122 (181)
12 d1weha_ c.129.1.1 (A:) Hypothe 64.4 2.3 0.00016 19.4 2.8 21 99-119 100-120 (171)
13 d1zuna1 c.26.2.2 (A:1-211) Sul 55.8 5.5 0.0004 17.0 5.6 54 20-73 12-66 (211)
14 d1rcua_ c.129.1.1 (A:) Hypothe 49.5 7 0.00051 16.4 5.4 82 31-118 32-118 (170)
15 d1ni5a1 c.26.2.5 (A:0-226) tRN 47.3 7.5 0.00055 16.2 8.4 106 27-135 6-115 (227)
16 d1weka_ c.129.1.1 (A:) Hypothe 46.5 7.7 0.00056 16.1 6.3 101 30-142 60-169 (208)
17 d1wy5a1 c.26.2.5 (A:1-216) Til 43.1 8.7 0.00064 15.8 8.7 104 30-136 20-133 (216)
18 d1xnga1 c.26.2.1 (A:3-257) NH3 43.1 8.8 0.00064 15.8 4.8 60 10-75 1-62 (255)
19 d1wxia1 c.26.2.1 (A:2-275) NH3 32.2 13 0.00095 14.7 3.9 36 11-50 17-57 (274)
20 d1hv8a1 c.37.1.19 (A:3-210) Pu 31.7 13 0.00097 14.7 6.5 25 31-55 39-63 (208)
21 d1m0sa1 c.124.1.4 (A:1-126,A:1 31.5 13 0.00098 14.7 2.5 25 34-58 19-43 (147)
22 d1kqpa_ c.26.2.1 (A:) NH3-depe 29.6 14 0.0011 14.5 4.6 37 10-48 16-54 (271)
23 d1lk5a1 c.124.1.4 (A:1-130,A:2 29.6 14 0.0011 14.5 3.6 40 13-58 4-43 (149)
24 d2cyja1 c.103.1.1 (A:1-118) Hy 27.1 16 0.0012 14.2 2.5 22 121-142 53-74 (118)
25 d2q4qa1 c.103.1.1 (A:2-122) Hy 25.7 17 0.0012 14.0 2.6 17 126-142 58-74 (121)
26 d2g9na1 c.37.1.19 (A:21-238) I 24.4 18 0.0013 13.9 7.4 26 46-71 138-163 (218)
27 d1xhoa_ d.79.1.2 (A:) Chorisma 24.3 18 0.0013 13.9 2.1 71 10-80 13-84 (112)
28 d2a7ya1 b.34.6.3 (A:1-80) Hypo 23.9 15 0.0011 14.3 1.5 23 126-151 34-56 (80)
29 d2b8na1 c.118.1.1 (A:4-417) Pu 23.2 12 0.00087 15.0 0.9 37 9-46 87-123 (414)
30 d2ftsa3 c.57.1.2 (A:499-653) G 22.8 19 0.0014 13.7 7.4 122 63-203 2-135 (155)
31 d1gpma1 c.26.2.1 (A:208-404) G 22.2 20 0.0014 13.6 3.8 26 195-224 170-195 (197)
32 d1odfa_ c.37.1.6 (A:) Hypothet 20.6 21 0.0016 13.4 6.3 44 32-75 23-72 (286)
33 d1rz3a_ c.37.1.6 (A:) Hypothet 20.6 21 0.0016 13.4 2.9 36 20-56 7-44 (198)
No 1
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=363.98 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=190.6
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHH
Q ss_conf 89994898999999999999999999972897799987986469999878763079532389981321003567320278
Q gi|254780505|r 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQS 84 (234)
Q Consensus 5 ~i~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~ 84 (234)
|..||.+.+++...+++.|.+.++++++++++++|+||||+||..+|+.|++..+||+||++|++||||||.+|++||++
T Consensus 1 ~~~i~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~i~lsGG~tp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~ 80 (218)
T d1vl1a_ 1 KTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRIHFFLSDERYVPLDSDQSNFR 80 (218)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTTSCCCGGGEEEEESEEESSCTTSTTCHHH
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCEECCCCCCCCCHHH
T ss_conf 93999777899999999999999999985899899978980599999999834998004899861201136776303699
Q ss_pred HHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEECCCCCCCCE
Q ss_conf 89997623567763214445887898999999999996315877648994478877143402786410022156674318
Q gi|254780505|r 85 FISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSV 164 (234)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~~~~~~~ 164 (234)
+++++|+++..++..+++++....+++++++.|++.+.... ++||+++||||+|||||||||+++... +..+
T Consensus 81 ~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~y~~~i~~~~-~~~Dl~lLG~G~DGHiASlFp~~~~~~-------~~~~ 152 (218)
T d1vl1a_ 81 NINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSAT-DQFDLAILGMGPDGHVASIFDLETGNK-------DNLV 152 (218)
T ss_dssp HHHHHTTTTSCCCGGGEECCCTTSCHHHHHHHHHHHHHHHC-SSCSEEEECCCTTSCBTTBCSHHHHTC-------SSSE
T ss_pred HHHHHHHHHCCCCHHEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCCCCCCC-------CCEE
T ss_conf 99987634214542115534665628999998655430235-421588716788886434578764432-------2537
Q ss_pred EEECC-CCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 99538-9987215870878884158299998183489999999808983206089996189996899
Q gi|254780505|r 165 IAIKD-YTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEV 230 (234)
Q Consensus 165 ~~~~~-~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~V 230 (234)
..+.. +.+|++|||||++.|++|++|+|+++|++|+++++++++++ .|||++|+.|.++.++|
T Consensus 153 ~~~~~~~~~~~~RITltl~~i~~ak~i~ll~~G~~K~~~l~~~~~~~---~~Pa~~l~~~~~~~~~~ 216 (218)
T d1vl1a_ 153 TFTDPSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDT---PLPAYFVRGKEKTVWFV 216 (218)
T ss_dssp EECSSBTTTTBCEEEECHHHHTTCSEEEEEEESHHHHHHHHHHHTTC---CCGGGGCCCSSEEEEEE
T ss_pred EEECCCCCCCCCEEECCHHHHHCCCEEEEEECCHHHHHHHHHHHCCC---CCCHHHHCCCCCEEEEE
T ss_conf 84145558997766357777630177999976889999999996099---98858866799879997
No 2
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=0 Score=356.68 Aligned_cols=226 Identities=19% Similarity=0.155 Sum_probs=188.5
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHH-HHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCCCEEEEECCCCC-CCCC
Q ss_conf 289994898999999999999999999-97289779998798646999987876----30795323899813210-0356
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIG-ITNKGTASIALSGGLTPRFFLEELSI----INVDWHKVVVTLVDERF-VPLE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~-i~~~~~~~i~lsGGstp~~~y~~L~~----~~~~w~kv~~~~~DER~-V~~~ 77 (234)
+||+|++|++++++.+|+.|++.|.+. ..+++.|+|+||||+||..+|+.|++ ..++|+||+||++|||+ +|.+
T Consensus 1 Mkiii~~d~~e~s~~aA~~i~~~I~~~~~~~~~~~~i~lsGGsTP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~~~~d 80 (281)
T d1ne7a_ 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRD 80 (281)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTT
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCEEECCCCC
T ss_conf 93899799999999999999999997330568977999799867999999999987526998568699956166217876
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC
Q ss_conf 7320278899976235677632144458-878989999999999963158776489944788771434027864100221
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYY-PQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL 156 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~ 156 (234)
|++||+++++++|+++...+..+++.+. ...+++++++.|++.+... ++||+++||||+||||||||||++......
T Consensus 81 ~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~i~~~--~~~Dl~lLGiG~DGH~AslfP~~~~~~~~~ 158 (281)
T d1ne7a_ 81 HPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAA--GGIELFVGGIGPDGHIAFNEPGSSLVSRTR 158 (281)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHT--TSCSEEEECCCTTCCSTTCCTTCCTTCCSE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEECCCCCCEEEECCCCCCCCCCCE
T ss_conf 166699999999762022336554136456788999998899999737--986579853676644663268863434431
Q ss_pred ----CCCC---CCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf ----5667---431899538998721587087888415829999818348999999980898320608999618999689
Q gi|254780505|r 157 ----DTHT---PRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234)
Q Consensus 157 ----~~~~---~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234)
+..+ ...+.....+++|++|||||++.|++|++|+|+++|++|+++++++++|+.+..+|||+|+.|+++.++
T Consensus 159 ~~~~~~~t~~~~~~~~~~~~~~~P~~riTltl~~i~~Ak~iill~~G~~Ka~~v~~~l~~~~~~~~PAS~l~~h~~~~~~ 238 (281)
T d1ne7a_ 159 VKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFV 238 (281)
T ss_dssp EEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEE
T ss_pred EEEECHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEE
T ss_conf 34404146778888605676789963440589998404269999927547999999972899886684987249987999
Q ss_pred EE
Q ss_conf 98
Q gi|254780505|r 230 VH 231 (234)
Q Consensus 230 V~ 231 (234)
+.
T Consensus 239 ~D 240 (281)
T d1ne7a_ 239 CD 240 (281)
T ss_dssp EE
T ss_pred EE
T ss_conf 84
No 3
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=341.22 Aligned_cols=226 Identities=20% Similarity=0.216 Sum_probs=188.6
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEECCCCC-CCCC
Q ss_conf 289994898999999999999999999972-897799987986469999878763----0795323899813210-0356
Q gi|254780505|r 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITN-KGTASIALSGGLTPRFFLEELSII----NVDWHKVVVTLVDERF-VPLE 77 (234)
Q Consensus 4 ~~i~i~~~~~~l~~~~a~~i~~~i~~~i~~-~~~~~i~lsGGstp~~~y~~L~~~----~~~w~kv~~~~~DER~-V~~~ 77 (234)
+|+++++|.+++++.+|++|++.|++.... ++.|+|+||||+||..+|+.|++. ++||+|++||++|||| +|.+
T Consensus 1 M~iii~~~~~e~~~~aA~~i~~~I~~~~~~~~~~f~ialsGGsTP~~~y~~L~~~~~~~~i~w~~v~~~~~DEr~v~p~~ 80 (266)
T d1fsfa_ 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKE 80 (266)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSSCTT
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCC
T ss_conf 90799599999999999999999997330469977999789824999999999777515997356699968830358998
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC
Q ss_conf 73202788999762356776321444588-78989999999999963158776489944788771434027864100221
Q gi|254780505|r 78 NLRSNQSFISKFFLQNKAQKASFIPLYYP-QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL 156 (234)
Q Consensus 78 ~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~ 156 (234)
+++||+.+++++|+++...+..+++.+.. ..+.++.++.|++.+... ++||+++||||+|||+||||||++......
T Consensus 81 ~~~s~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dl~lLGiG~DGH~AslfP~~~~~~~~~ 158 (266)
T d1fsfa_ 81 HPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSY--GKIHLFMGGVGNDGHIAFNEPASSLASRTR 158 (266)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHH--CCCSEEEECCCTTSCCTTCCTTCCTTCCSE
T ss_pred CHHHHHHHHHHHHHCCCCCCHHHEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEECCCCCCCCCCCE
T ss_conf 367789998752000035658874315677665899999999998743--885699943577863553056663445523
Q ss_pred ----C--CC-CCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEE
Q ss_conf ----5--66-7431899538998721587087888415829999818348999999980898320608999618999689
Q gi|254780505|r 157 ----D--TH-TPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLE 229 (234)
Q Consensus 157 ----~--~~-~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~~~~~Pas~ll~~~~~~~~ 229 (234)
. .. ....+.....+.+|++|||||++.|++|++|+++++|++|+++++++++|+.+.+|||++|+.|+++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~p~~riTltl~~i~~ak~i~ll~~G~~Ka~al~~~l~~~~~~~~Pas~l~~h~~~~~~ 238 (266)
T d1fsfa_ 159 IKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMV 238 (266)
T ss_dssp EEECCHHHHHTTTTTTTTCTTTSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCCCTTSGGGGGGGSSSEEEE
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEE
T ss_conf 68604166776522156678989965344589999522058999758789999999973899875762986549987999
Q ss_pred EE
Q ss_conf 98
Q gi|254780505|r 230 VH 231 (234)
Q Consensus 230 V~ 231 (234)
+.
T Consensus 239 ~D 240 (266)
T d1fsfa_ 239 CD 240 (266)
T ss_dssp EC
T ss_pred EE
T ss_conf 84
No 4
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]}
Probab=99.86 E-value=9.7e-23 Score=156.52 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=136.1
Q ss_pred EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 899948----9899999999999999999997289779998798646999987876307953238998132100356732
Q gi|254780505|r 5 KLYVAE----NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 5 ~i~i~~----~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
+++|.+ +.++..+.+++..++.+...++ ++...|++++|+|+..+++.|.....+|. ++.+++.++....+++
T Consensus 15 ~~~Vvp~~~~~~~~~~~~l~~~aa~~L~~~l~-~~~~~ig~s~G~T~~~~~~~l~~~~~~~~--~~~~v~l~G~~~~~~~ 91 (247)
T d2o0ma1 15 RCIVVAGDSDIQKKVLSDFGDVLTNTLNLLLP-NGENTIAVMGGTTMAMVAENMGSLETEKR--HNLFVPARGGIGEAVS 91 (247)
T ss_dssp EEEEESSCTTTCTHHHHHHHHHHHHHHHHHCC-SEEEEEEECCSHHHHHHHHTCCCCCCSSE--EEEEEESBSCCCCCGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHCCCCCCCC--CEEEEECCCCCCCCCC
T ss_conf 89996799775199999999999999998701-49869999677799999997140257767--4389944657888877
Q ss_pred CHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCEEEECCCCCCCEEECCC
Q ss_conf 027889997623567763214445887898999999999996315--877648994478877143402786410022156
Q gi|254780505|r 81 SNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLI--HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDT 158 (234)
Q Consensus 81 Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~~~ 158 (234)
++...+...|.++...+..+++.|....+.....-.++..++... ...+|++++|||+|||++|+||.++..-..+..
T Consensus 92 ~~~~~~~~~la~~~~~~~~~l~aP~~~~~e~~~~l~~e~~i~~~l~~~~~~Dial~GIG~~~~~~~~~~~~~~~~~~l~~ 171 (247)
T d2o0ma1 92 VQANSISAVMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRALHMAARRKMSDDEMVMLKQ 171 (247)
T ss_dssp GSHHHHHHHHHHHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHEECCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 68999999999761997000458877877999999867689999984567798999568887433468999899999987
Q ss_pred CC-----CCCEEEECCCCCC-CEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCC
Q ss_conf 67-----4318995389987-2158708788841582999981834899999998089
Q gi|254780505|r 159 HT-----PRSVIAIKDYTSN-EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGD 210 (234)
Q Consensus 159 ~~-----~~~~~~~~~~~~p-~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~ 210 (234)
.. ...++..+..+++ .++||++++.|++++++++++.|++|+++++.++.|.
T Consensus 172 ~~avgdi~~~f~d~~G~~~~~~~~i~i~l~~l~~~~~vi~va~G~~Ka~ai~aAL~gg 229 (247)
T d2o0ma1 172 KNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNA 229 (247)
T ss_dssp TTCCEEETTEEECTTSCEEEECCCSBCCGGGGGGCSEEEEECCSGGGHHHHHHHHTTS
T ss_pred CCCHHHHHHCEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHCC
T ss_conf 2775878624145789735776330478789754882999966816799999999669
No 5
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]}
Probab=99.65 E-value=1.3e-16 Score=118.92 Aligned_cols=196 Identities=9% Similarity=-0.020 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC--CCCCCEEEEECC-CCCCCCCCCCCHHHHH
Q ss_conf 8989999999999999999999728977999879864699998787630--795323899813-2100356732027889
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN--VDWHKVVVTLVD-ERFVPLENLRSNQSFI 86 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~--~~w~kv~~~~~D-ER~V~~~~~~Sn~~~~ 86 (234)
++.++..+.+++..++.+.+.++. ...|++++|+|+..+++.|.+.. .++.-+.++-.. .+..+..+.++....+
T Consensus 26 ~~~~~~~~~lg~aAA~~l~~~l~~--~~~igvswG~T~~~~~~~l~~~~~~~~~~~v~l~G~~~~~~~~~~~~~~~~~~~ 103 (255)
T d3efba1 26 EDEETQLAMMGLHGAQLLDRLLEP--GDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSA 103 (255)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCT--TCEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 760689999999999999986789--988999386889999998220034678169981467677757877878999999
Q ss_pred HHHHHCCCCCCCCEEECCCCCC---CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEEEC----CCC
Q ss_conf 9976235677632144458878---989999999999963158776489944788771434027864100221----566
Q gi|254780505|r 87 SKFFLQNKAQKASFIPLYYPQK---TIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIAL----DTH 159 (234)
Q Consensus 87 ~~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~~~----~~~ 159 (234)
.+.|..+..... .|.+.+.. +.......+.+.++... .+|++++|||.+||.++++|+........ ...
T Consensus 104 a~~~~~~~~~l~--~P~~~~~~~~~~~l~~~~~v~~~l~~~~--~~Dval~GIG~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (255)
T d3efba1 104 AAKLKGESHLAD--FPALLDNPLIRNGIMQSQHFKTISAYWD--NLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQ 179 (255)
T ss_dssp HHHTTCEECCCC--SBSBCSSHHHHHHHHTSHHHHHHHHHHH--TCSEEEECCBCCC---------CSCHHHHHHHHHTT
T ss_pred HHHHCCCCCCCC--CCCCCCCHHHHHHHHHCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 999289644777--5335799889999985859999999750--599999916878765654456788889999999848
Q ss_pred --CCCCEEEECC------CCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf --7431899538------998721587087888415829999818348999999980898
Q gi|254780505|r 160 --TPRSVIAIKD------YTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 160 --~~~~~~~~~~------~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
.+-...+.+. .+.+.+.|++++..|+++++++++|.|++|+++++.++.|.-
T Consensus 180 avgdi~~~f~d~~G~~v~~~~~~r~i~i~l~~l~~~~~~I~vA~G~~Ka~aI~aaL~gg~ 239 (255)
T d3efba1 180 VAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKY 239 (255)
T ss_dssp CCEEETTEEECTTSCBCCCTTGGGBCBCCHHHHHTSSEEEEECCCSCSSCHHHHHHHTTS
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 299997323767998945667740565588997168838999658166999999983699
No 6
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]}
Probab=99.63 E-value=1e-16 Score=119.67 Aligned_cols=197 Identities=10% Similarity=0.055 Sum_probs=122.5
Q ss_pred EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCC
Q ss_conf 899948----98999999999999999999972897799987986469999878763--079532389981321003567
Q gi|254780505|r 5 KLYVAE----NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLEN 78 (234)
Q Consensus 5 ~i~i~~----~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~ 78 (234)
+++|.+ +.++..+.+++..++.+.+.++ +...|++++|+|+..+++.|... .-+|.-|.++..+++ +
T Consensus 21 ~~~Vv~~~~~~~~~~~~~l~~aaA~~L~~~l~--~~~~igvswG~T~~~~~~~l~~~~~~~~~~~V~l~G~~~~-----~ 93 (250)
T d2okga1 21 DAIIVSGDSDQSPWVKKEMGRAAVACMKKRFS--GKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARGGLGE-----D 93 (250)
T ss_dssp EEEEESSCTTTCTHHHHHHHHHHHHHHHHHCC--SEEEEEECCSHHHHHHHHHCCCCTTCCEEEEEESEEECC-------
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-----C
T ss_conf 89996689887569999999999999998667--9988999587899999998411056887289982178887-----7
Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE
Q ss_conf 320278899976235677632144458878989999-----999999963158776489944788771434027864100
Q gi|254780505|r 79 LRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS 153 (234)
Q Consensus 79 ~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~ 153 (234)
..+|...+-..|.++...+..++|.|.-. +.++.. ..+.+.+.... ..|++++|||+++|+++++|.++.--
T Consensus 94 ~~~~~~~i~~~la~~~~~~~~~l~aP~~~-~~~~~~~l~~e~~i~~~l~~~~--~~Dial~GIG~~~~~~~~~~~~~~~~ 170 (250)
T d2okga1 94 VKNQANTICAHMAEKASGTYRLLFVPGQL-SQGAYSSIIEEPSVKEVLNTIK--SASMLVHGIGEAKTMAQRRNTPLEDL 170 (250)
T ss_dssp -CCHHHHHHHHHHHHHTCEECCCCCCCSC-CHHHHHHHHTSHHHHHHHHHHH--TCSEEEECCEEHHHHHHHTTCCHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCHHCCCCCHHHH
T ss_conf 67599999999998729965644674447-9899999986878999999731--69999992686861010578999999
Q ss_pred EECCCCC-----CCCEEEECCCC-CCCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf 2215667-----43189953899-8721587087888415829999818348999999980898
Q gi|254780505|r 154 IALDTHT-----PRSVIAIKDYT-SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 154 ~~~~~~~-----~~~~~~~~~~~-~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
..+.... .-.++..+... .+.++|++++..|++++++++++.|++|++|++.++.|.-
T Consensus 171 ~~l~~~gavgdi~~~f~d~~G~~~~~~r~i~i~l~~l~~~~~~i~vA~G~~K~~Ai~aAL~gg~ 234 (250)
T d2okga1 171 KKIDDNDAVTEAFGYYFNADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAYFKKPR 234 (250)
T ss_dssp HHHHHTTEEEEETTEEEETTSCEEEECSEEECCGGGGGGCSEEEEECCSGGGHHHHHHHTTSCC
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 9998658127775314257998413441203587896448868999778176999999983699
No 7
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=99.51 E-value=3.2e-14 Score=104.31 Aligned_cols=194 Identities=10% Similarity=0.007 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999999999999972897799987986469999878763079532389981321003567320278899976
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFF 90 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~l 90 (234)
+.+.+.+.++...++.+...++. + ..|++++|+|+..+++.|.. .++.+++|+.+.. .++..+++.+...+-..|
T Consensus 32 ~~~~~~~~l~~~aA~~l~~~l~~-~-~~iGvswG~Tl~~~~~~l~~--~~~~~~~vv~l~G-g~~~~~~~~~~~~i~~~l 106 (262)
T d2gnpa1 32 TPTILSERISQVAAGVLRNLIDD-N-MKIGFSWGKSLSNLVDLIHS--KSVRNVHFYPLAG-GPSHIHAKYHVNTLIYEM 106 (262)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCT-T-CEEEECCSHHHHHHHHHCCC--CCCSSCEEEESBC-CCTTSCGGGSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC-C-CEEEEECCHHHHHHHHHHCC--CCCCCCEEEECCC-CCCCCCCCCCHHHHHHHH
T ss_conf 76789999999999999984778-9-88999278889999997076--5667745994057-767776656899999999
Q ss_pred HCCCCCCCCEEECCCCCCCHHHHH-----HHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCE----EECCC--C
Q ss_conf 235677632144458878989999-----999999963158776489944788771434027864100----22156--6
Q gi|254780505|r 91 LQNKAQKASFIPLYYPQKTIEEAI-----RIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS----IALDT--H 159 (234)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~----~~~~~--~ 159 (234)
-.+...+..++|.|.-..+.+... ..+.+.+... ...|++++|+|..+|.+++++..-.-. ..... .
T Consensus 107 A~~~~~~~~~l~aP~~~~s~~~~~~l~~~~~i~~v~~~~--~~~dvai~GIG~~~~~~~~~~~~~~~~~~~~~l~~~gav 184 (262)
T d2gnpa1 107 SRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSW--KDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTV 184 (262)
T ss_dssp HHHHTCEECCCCSCSBCSSHHHHHHHHTSTTTHHHHHHT--TSCSEEEECCEECSHHHHHTTTTTSCHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHH--HCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCH
T ss_conf 999499700445776779999999998586999999997--338989994456777664023789998999999976818
Q ss_pred CCCCEEEECCCCC------CCEEEEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf 7431899538998------721587087888415829999818348999999980898
Q gi|254780505|r 160 TPRSVIAIKDYTS------NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 160 ~~~~~~~~~~~~~------p~~RITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
.+-...+.+.... +.+.|++++..|+++++++.++.|++|+++++.++.|+-
T Consensus 185 Gdi~g~f~d~~G~~v~~~~~~r~I~i~l~~lr~~~~~I~vA~G~~K~~aI~aAL~gg~ 242 (262)
T d2gnpa1 185 GEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANL 242 (262)
T ss_dssp EEETTEEECTTSCCCCHHHHTTBCBCCHHHHTTSSEEEEECCSGGGHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 8999766167899866766641431687897168978999668154999999983699
No 8
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]}
Probab=99.10 E-value=1.7e-09 Score=75.27 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9899999999999999999997289779998-798646999987876307953238998132100356732027889997
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNKGTASIAL-SGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKF 89 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~l-sGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ 89 (234)
+.+...+.++...+..+.+.++++ -.|++ ++|+|...+.+.|.........++|..+-- .++.+ ...+...+-..
T Consensus 30 ~~~~~~~~v~~~aA~~L~~~l~~~--~~igv~~wG~Tl~~~~~~l~~~~~~~~~~~vV~l~G-~~~~~-~~~~~~~i~~~ 105 (258)
T d2r5fa1 30 DEESIKQAIGSAAAHYLETSLSAQ--DHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLG-GVGNK-GAFEATLLTQR 105 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCTT--CEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEE-CCC---CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC--CEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEECCC-CCCCC-CCCCHHHHHHH
T ss_conf 757999999999999999862659--879998368089999987163556678805995678-87877-77589999999
Q ss_pred HHCCCCCCCCEEECCCCCCCHH-----HHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCEE-ECCCC-CCC
Q ss_conf 6235677632144458878989-----9999999999631587764899447887714340278641002-21566-743
Q gi|254780505|r 90 FLQNKAQKASFIPLYYPQKTIE-----EAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSI-ALDTH-TPR 162 (234)
Q Consensus 90 ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Dl~lLGiG~DGH~ASlFP~~~~l~~-~~~~~-~~~ 162 (234)
|-.+...+..++|.|.--.+.+ .....+.+-++... ..|++++|+|.-++..++++....++. .+..- ...
T Consensus 106 lA~~~~~~~~~l~aP~~~~s~~~~~~l~~~~~i~~vl~~~~--~~dial~GIG~~~~~~~~~~~~~~~~~~~~~~l~~~g 183 (258)
T d2r5fa1 106 LATLLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHRFD--SITLAIVGIGELEPSQLLRNSGNYYTEDMLRVLAERG 183 (258)
T ss_dssp HHHHHTSCEECCCCC----------CCHHHHHHHHHHHHTT--TCCEEEECCEECC-------------------CTTTT
T ss_pred HHHHCCCCEEECCCCCCCCCHHHHHHHHHCHHHHHHHHHHH--CCCEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHCC
T ss_conf 99873993670367223689999999985846999999982--5999999237887654111157889999999999889
Q ss_pred C-----EEEECCCCC----C-CEE-EEECHHHHHCCCEEEEEEECHHHHHHHHHHHCCCC
Q ss_conf 1-----899538998----7-215-87087888415829999818348999999980898
Q gi|254780505|r 163 S-----VIAIKDYTS----N-EQR-MTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDD 211 (234)
Q Consensus 163 ~-----~~~~~~~~~----p-~~R-ITlt~~~l~~a~~i~ll~~G~~K~~al~~~l~~~~ 211 (234)
. ..+.+.... + .+| |++++..|.++++++.++.|++|+++++.++.|.-
T Consensus 184 AvGdi~~~f~d~~G~~v~~~~~~r~i~i~l~~l~~i~~~I~vA~G~~K~~aI~aAl~gg~ 243 (258)
T d2r5fa1 184 AVGDICLRYFDAQGKPVLEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIKGALLGGY 243 (258)
T ss_dssp CCEEETTEEECTTSCBC-------CEECCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTC
T ss_pred EEEHHHHHHCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCC
T ss_conf 025276434167899976665431431687896568858999558165999999982699
No 9
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=81.51 E-value=1.5 Score=20.55 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=21.5
Q ss_pred CCEEECCCCCCCHHHHHHHHHHH-HHHHCCCCCCEEEECC
Q ss_conf 32144458878989999999999-9631587764899447
Q gi|254780505|r 98 ASFIPLYYPQKTIEEAIRIANEK-ICQLIHFPFDVVVLGM 136 (234)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~lLGi 136 (234)
.-++-+|..-.+.+|....+... +... .. -+++|..
T Consensus 104 dafIvlPGG~GTLdEl~e~lt~~ql~~~-~k--piiiln~ 140 (183)
T d2q4oa1 104 DAFIALPGGYGTLEELLEVITWAQLGIH-DK--PVGLLNV 140 (183)
T ss_dssp SEEEECSCCHHHHHHHHHHHHHHHHTSC-CC--CEEEECG
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHCCC-CC--CEEEEEC
T ss_conf 4588807730149999999999983677-88--8288606
No 10
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Probab=80.43 E-value=1.4 Score=20.62 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=22.1
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 3214445887898999999999996315877648994478
Q gi|254780505|r 98 ASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMG 137 (234)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLGiG 137 (234)
.-++-++..-.+.+|-...+... ++...+.-+++++..
T Consensus 99 dafI~lPGG~GTLdEl~e~l~~~--ql~~~~kPiil~n~~ 136 (179)
T d1t35a_ 99 DGFISMPGGFGTYEELFEVLCWA--QIGIHQKPIGLYNVN 136 (179)
T ss_dssp SEEEECSCCHHHHHHHHHHHHTT--SCSSCCCCEEEECGG
T ss_pred CEEEEECCCCCHHHHHHHHHHHH--HHHCCCCCEEEECCC
T ss_conf 73799467664255799999999--962558984762577
No 11
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=79.33 E-value=1.7 Score=20.10 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=14.8
Q ss_pred CCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 32144458878989999999999
Q gi|254780505|r 98 ASFIPLYYPQKTIEEAIRIANEK 120 (234)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~ 120 (234)
.-++-+|..-.+.+|....+...
T Consensus 100 dafIvlPGG~GTLdEl~e~l~l~ 122 (181)
T d1ydhb_ 100 EAFIALPGGYGTMEELLEMITWS 122 (181)
T ss_dssp SEEEECSCSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 06889377430378999999998
No 12
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}
Probab=64.37 E-value=2.3 Score=19.41 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=15.2
Q ss_pred CEEECCCCCCCHHHHHHHHHH
Q ss_conf 214445887898999999999
Q gi|254780505|r 99 SFIPLYYPQKTIEEAIRIANE 119 (234)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ 119 (234)
-++-++..-.+.+|....+..
T Consensus 100 a~I~lPGG~GTLdEl~e~~~~ 120 (171)
T d1weha_ 100 GYLALPGGVGTLAELVLAWNL 120 (171)
T ss_dssp EEEECSCCHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
T ss_conf 235627763428999999999
No 13
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=55.81 E-value=5.5 Score=17.03 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEEEECCCCC
Q ss_conf 9999999999997289779998798646999987876307-95323899813210
Q gi|254780505|r 20 AKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINV-DWHKVVVTLVDERF 73 (234)
Q Consensus 20 a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~~-~w~kv~~~~~DER~ 73 (234)
.+..++.++.+.++.+...++.|||.--..++..+.+... .-..+.++++|..+
T Consensus 12 ~~~ai~~ir~~~~~~d~i~va~SGGKDS~vlL~L~~~~~~~~~~~~~~v~~d~~~ 66 (211)
T d1zuna1 12 EAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 66 (211)
T ss_dssp HHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSC
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 9999999999999669979995785788999999986323336872289845755
No 14
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=49.50 E-value=7 Score=16.41 Aligned_cols=82 Identities=21% Similarity=0.200 Sum_probs=34.4
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEECCCCC-CCCCCCC--CHHHH-HHHHHHCCCCCCCCEEECCC
Q ss_conf 972897799987986469999878763079-5323899813210-0356732--02788-99976235677632144458
Q gi|254780505|r 31 ITNKGTASIALSGGLTPRFFLEELSIINVD-WHKVVVTLVDERF-VPLENLR--SNQSF-ISKFFLQNKAQKASFIPLYY 105 (234)
Q Consensus 31 i~~~~~~~i~lsGGstp~~~y~~L~~~~~~-w~kv~~~~~DER~-V~~~~~~--Sn~~~-~~~~ll~~~~~~~~~~~~~~ 105 (234)
+.++|. ++++||.. ++-++.++.-.. =-++.-+.-||+. -+..+.. ....+ -|+.++-.. ..-++-++.
T Consensus 32 la~~g~--~V~~GG~~--GlM~ava~ga~~~gg~viGilP~~~~~n~~~~~~i~~~~~~~~Rk~~m~~~--sda~I~lPG 105 (170)
T d1rcua_ 32 LAKKGY--LVFNGGRD--GVMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQMRSFVLLRN--ADVVVSIGG 105 (170)
T ss_dssp HHHTTC--EEEECCSS--HHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTT--CSEEEEESC
T ss_pred HHHCCC--EEECCCCC--CHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHHHC--CCCEEEECC
T ss_conf 998799--89878854--787999998986388643056333226765330588634345667888532--442156332
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 8789899999999
Q gi|254780505|r 106 PQKTIEEAIRIAN 118 (234)
Q Consensus 106 ~~~~~~~~~~~~~ 118 (234)
...+.+|....+.
T Consensus 106 G~GTl~El~~a~~ 118 (170)
T d1rcua_ 106 EIGTAIEILGAYA 118 (170)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 4554999999999
No 15
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.31 E-value=7.5 Score=16.20 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 9999972897799987986469999878763--07953238998132100356732027889997623567763214445
Q gi|254780505|r 27 LSIGITNKGTASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY 104 (234)
Q Consensus 27 i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~ 104 (234)
+...+..+....|++|||.--..++..|.+. ...--++..+.+|..+=+ ++.. -...+++. ......+.......
T Consensus 6 l~~~l~~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~-~s~~-~~~~~~~~-~~~~~i~~~i~~~~ 82 (227)
T d1ni5a1 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA-NADA-WVTHCENV-CQQWQVPLVVERVQ 82 (227)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS-SHHH-HHHHHHHH-HHHTTCCEEEECCC
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-CHHH-HHHHHHHH-HHHCCCCCEEEECC
T ss_conf 655428899689996384999999999999987588956999986789875-2144-58999999-75415763266313
Q ss_pred --CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf --8878989999999999963158776489944
Q gi|254780505|r 105 --YPQKTIEEAIRIANEKICQLIHFPFDVVVLG 135 (234)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lLG 135 (234)
......+..++++............+.+++|
T Consensus 83 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~g 115 (227)
T d1ni5a1 83 LAQEGLGIEAQARQARYQAFARTLLPGEVLVTA 115 (227)
T ss_dssp CCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 333443036689999999888775203899999
No 16
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}
Probab=46.53 E-value=7.7 Score=16.13 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHC--CCCCCEEEE---ECCCCCC-CCCCCC--CHHHHHHHHHHCCCCCCCCEE
Q ss_conf 99728977999879864699998787630--795323899---8132100-356732--027889997623567763214
Q gi|254780505|r 30 GITNKGTASIALSGGLTPRFFLEELSIIN--VDWHKVVVT---LVDERFV-PLENLR--SNQSFISKFFLQNKAQKASFI 101 (234)
Q Consensus 30 ~i~~~~~~~i~lsGGstp~~~y~~L~~~~--~~w~kv~~~---~~DER~V-~~~~~~--Sn~~~~~~~ll~~~~~~~~~~ 101 (234)
.|.++|.- ++.||. + ++-.+.++.- -.. ++.=+ ..+++-. +..+.. ......|+.++-.. ..-++
T Consensus 60 ~La~~g~~--lv~GGg-~-GlMgava~ga~~~gG-~viGi~~~~~~~~~~~~~~~~~i~~~~~~~Rk~~m~~~--sDafI 132 (208)
T d1weka_ 60 ALAEAGFG--VVTGGG-P-GVMEAVNRGAYEAGG-VSVGLNIELPHEQKPNPYQTHALSLRYFFVRKVLFVRY--AVGFV 132 (208)
T ss_dssp HHHHHTCE--EEECSC-S-HHHHHHHHHHHHTTC-CEEEEEECCTTCCCCCSCCSEEEEESCHHHHHHHHHHT--EEEEE
T ss_pred HHHHCCCE--EEECCC-C-HHHHHHHHHHHHCCC-CEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHC--CCCEE
T ss_conf 99957452--786788-3-277798732343288-50233233211001344431378626288999999727--87469
Q ss_pred ECCCCCCCHHHHHHHHHHHHH-HHCCCCCCEEEECCCCCCCE
Q ss_conf 445887898999999999996-31587764899447887714
Q gi|254780505|r 102 PLYYPQKTIEEAIRIANEKIC-QLIHFPFDVVVLGMGIDGHT 142 (234)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~lLGiG~DGH~ 142 (234)
-++....+.+|-...+....- .....| +++++ +|+-
T Consensus 133 ~lPGG~GTLdEl~e~lt~~ql~~~~~kP--Iil~~---~gfw 169 (208)
T d1weka_ 133 FLPGGFGTLDELSEVLVLLQTEKVHRFP--VFLLD---RGYW 169 (208)
T ss_dssp ECSCCHHHHHHHHHHHHHHHTTSSCCCC--EEEEC---HHHH
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCCCC--CCCCC---CCHH
T ss_conf 9357640578999999998615667676--20468---7477
No 17
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=43.14 E-value=8.7 Score=15.81 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=53.1
Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECC---
Q ss_conf 9972897799987986469999878763--07953238998132100356732027889997623567763214445---
Q gi|254780505|r 30 GITNKGTASIALSGGLTPRFFLEELSII--NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY--- 104 (234)
Q Consensus 30 ~i~~~~~~~i~lsGGstp~~~y~~L~~~--~~~w~kv~~~~~DER~V~~~~~~Sn~~~~~~~ll~~~~~~~~~~~~~--- 104 (234)
.++......||+|||.--..+...|.+. ...+..+....+|..+-+. + +.....+++. ......+.......
T Consensus 20 l~~~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~-s-~~~~~~~~~~-~~~l~i~~~i~~~~~~~ 96 (216)
T d1wy5a1 20 IFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRES-A-ERDEEFCKEF-AKERNMKIFVGKEDVRA 96 (216)
T ss_dssp SCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTH-H-HHHHHHHHHH-HHHHTCCEEEEECCHHH
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-H-HHHHHHHHHH-HHHHHHHHHHHCCCHHH
T ss_conf 5689986999967859999999999999876687708888751123410-3-3213478999-98620001021021011
Q ss_pred ---CCCCCHHHHHH--HHHHHHHHHCCCCCCEEEECC
Q ss_conf ---88789899999--999999631587764899447
Q gi|254780505|r 105 ---YPQKTIEEAIR--IANEKICQLIHFPFDVVVLGM 136 (234)
Q Consensus 105 ---~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~lLGi 136 (234)
....+.+.+++ +|..........++|.+++|-
T Consensus 97 ~~~~~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH 133 (216)
T d1wy5a1 97 FAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAH 133 (216)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCC
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 1137764457879999988764111122312157652
No 18
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}
Probab=43.06 E-value=8.8 Score=15.80 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 89899999999999999999997289779998798--6469999878763079532389981321003
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGG--LTPRFFLEELSIINVDWHKVVVTLVDERFVP 75 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGG--stp~~~y~~L~~~~~~w~kv~~~~~DER~V~ 75 (234)
.|++.+...+.+.|-+.++.. ....+.+++||| ||... .|+.+-. -++++-..++..+..
T Consensus 1 ~d~~~~~~~l~~~l~~~~~~~--G~k~vvvglSGGVDSsv~A---~L~~~a~-~~~v~~v~mp~~~~~ 62 (255)
T d1xnga1 1 KDYQKLIVYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVG---VLCQKVF-KENAHALLMPSSVSM 62 (255)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHH---HHHHHHH-GGGEEEEECCCSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHH---HHHHHHH-HHHCCHHCCCCHHCC
T ss_conf 988999999999999999982--9982999787988999999---9999975-651211127512145
No 19
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}
Probab=32.21 E-value=13 Score=14.74 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEECCC--CCHHHH
Q ss_conf 989999999999999999999728---9779998798--646999
Q gi|254780505|r 11 NKKRLAQKLAKKVAEQLSIGITNK---GTASIALSGG--LTPRFF 50 (234)
Q Consensus 11 ~~~~l~~~~a~~i~~~i~~~i~~~---~~~~i~lsGG--stp~~~ 50 (234)
++++..+.+...+ ++-++++ ..++++|||| |+....
T Consensus 17 ~~ee~i~~~v~~L----~dy~~k~~~~k~vVvGlSGGIDSav~A~ 57 (274)
T d1wxia1 17 NAEEEIRRSVDFL----KSYLQTYPFIKSLVLGISGGQDSTLAGK 57 (274)
T ss_dssp CHHHHHHHHHHHH----HHHHHHSTTCCEEEEECCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHH----HHHHHHCCCCCEEEEECCCCHHHHHHHH
T ss_conf 9899999999999----9999983999859998978788999999
No 20
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=31.74 E-value=13 Score=14.69 Aligned_cols=25 Identities=4% Similarity=-0.126 Sum_probs=10.4
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 9728977999879864699998787
Q gi|254780505|r 31 ITNKGTASIALSGGLTPRFFLEELS 55 (234)
Q Consensus 31 i~~~~~~~i~lsGGstp~~~y~~L~ 55 (234)
+..+....+.-++|+--...|....
T Consensus 39 l~g~~d~iv~a~TGsGKT~~~~l~~ 63 (208)
T d1hv8a1 39 LNDEYNIVAQARTGSGKTASFAIPL 63 (208)
T ss_dssp HHTCSEEEEECCSSSSHHHHHHHHH
T ss_pred HCCCCCEEEECHHCCCCCCEEECCC
T ss_conf 8499974644100344440020333
No 21
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]}
Probab=31.52 E-value=13 Score=14.67 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 8977999879864699998787630
Q gi|254780505|r 34 KGTASIALSGGLTPRFFLEELSIIN 58 (234)
Q Consensus 34 ~~~~~i~lsGGstp~~~y~~L~~~~ 58 (234)
++.-.|+|-+|+|...+.+.|...+
T Consensus 19 ~dg~~I~LdsGTT~~~la~~L~~~~ 43 (147)
T d1m0sa1 19 KADRIVGVGSGSTVNCFIEALGTIK 43 (147)
T ss_dssp CTTSEEEECCSHHHHHHHHHHHTTG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf 9999999888636999999987515
No 22
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=29.60 E-value=14 Score=14.47 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CCHH
Q ss_conf 89899999999999999999997289779998798--6469
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGG--LTPR 48 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGG--stp~ 48 (234)
-|+++........+-+.++++ ....+.|+|||| |+-.
T Consensus 16 ~d~~e~i~~~v~~lrdy~~ks--g~~gvvvglSGGIDSAv~ 54 (271)
T d1kqpa_ 16 IDPKQEIEDRVNFLKQYVKKT--GAKGFVLGISGGQDSTLA 54 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--TCCEEEEECCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHH
T ss_conf 998999999999999999994--998199979888889999
No 23
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.59 E-value=14 Score=14.47 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 9999999999999999999728977999879864699998787630
Q gi|254780505|r 13 KRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN 58 (234)
Q Consensus 13 ~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGstp~~~y~~L~~~~ 58 (234)
+|.=+.+|+..++.+ ++.-+|.|-+|+|...+.+.|.+..
T Consensus 4 ~E~K~~IA~~Aa~lI------~dg~~I~ldsGTT~~~la~~L~~~~ 43 (149)
T d1lk5a1 4 EEMKKIAAKEALKFI------EDDMVIGLGTGSTTAYFIKLLGEKL 43 (149)
T ss_dssp HHHHHHHHHHHGGGC------CTTCEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC------CCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999999999999768------9999999888608999999997753
No 24
>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=27.12 E-value=16 Score=14.20 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=15.8
Q ss_pred HHHHCCCCCCEEEECCCCCCCE
Q ss_conf 9631587764899447887714
Q gi|254780505|r 121 ICQLIHFPFDVVVLGMGIDGHT 142 (234)
Q Consensus 121 ~~~~~~~~~Dl~lLGiG~DGH~ 142 (234)
+..+....+|++++|.|..+.+
T Consensus 53 l~~~l~~~peilliGtG~~~~~ 74 (118)
T d2cyja1 53 LEKYLVEDFDVLLVGTGIYGML 74 (118)
T ss_dssp HHTTTTSCCSEEEEEECTTCCC
T ss_pred HHHHHCCCCCEEEEECCCCCCC
T ss_conf 9998525997899934887667
No 25
>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.70 E-value=17 Score=14.04 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.4
Q ss_pred CCCCCEEEECCCCCCCE
Q ss_conf 87764899447887714
Q gi|254780505|r 126 HFPFDVVVLGMGIDGHT 142 (234)
Q Consensus 126 ~~~~Dl~lLGiG~DGH~ 142 (234)
...+|++++|.|..+..
T Consensus 58 ~~~peilliGtG~~~~~ 74 (121)
T d2q4qa1 58 EKGVQTLVIGRGMSEAL 74 (121)
T ss_dssp TTCCSEEEEECCSSCCS
T ss_pred CCCCCEEEECCCCCCCC
T ss_conf 35999999868987540
No 26
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.36 E-value=18 Score=13.89 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 46999987876307953238998132
Q gi|254780505|r 46 TPRFFLEELSIINVDWHKVVVTLVDE 71 (234)
Q Consensus 46 tp~~~y~~L~~~~~~w~kv~~~~~DE 71 (234)
||..+++.+.+....++++.++-+||
T Consensus 138 TP~rl~~~l~~~~~~~~~l~~lVlDE 163 (218)
T d2g9na1 138 TPGRVFDMLNRRYLSPKYIKMFVLDE 163 (218)
T ss_dssp CHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred CCHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 78157778862883246534898640
No 27
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]}
Probab=24.26 E-value=18 Score=13.88 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 89899999999999999999-997289779998798646999987876307953238998132100356732
Q gi|254780505|r 10 ENKKRLAQKLAKKVAEQLSI-GITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLR 80 (234)
Q Consensus 10 ~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~i~lsGGstp~~~y~~L~~~~~~w~kv~~~~~DER~V~~~~~~ 80 (234)
+++++..++..+.+.+.++. .|+...-.++.++.-.--...|.+.+.+.+.|..|-++-.-|=-||-.=+.
T Consensus 13 n~~e~I~~at~eLl~~ii~~N~l~~edi~Sv~FT~T~DL~a~FPA~aaR~lG~~~Vpl~c~~E~~V~gsL~r 84 (112)
T d1xhoa_ 13 NTADEIVAETQKLLKEMAEKNGLEEDDIISIIFTVTKDLDAAFPAIAARNMGWTSTALMCMNEIDVPGSLEK 84 (112)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECTTCCSSCTHHHHHHTTCTTSEEEEEECCCCTTSCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 899999999999999999975999889899999866754542879999556997605001677878998463
No 28
>d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.90 E-value=15 Score=14.31 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.5
Q ss_pred CCCCCEEEECCCCCCCEEEECCCCCC
Q ss_conf 87764899447887714340278641
Q gi|254780505|r 126 HFPFDVVVLGMGIDGHTASFFPKGDT 151 (234)
Q Consensus 126 ~~~~Dl~lLGiG~DGH~ASlFP~~~~ 151 (234)
.+|+.+=+ .+|||.+..|||.+.
T Consensus 34 ~PPY~VRw---~ddGHe~lv~PGpDa 56 (80)
T d2a7ya1 34 SPPYVVRW---LVNGHETTVYPGSDA 56 (80)
T ss_dssp CSCEEEEE---TTTTEEEEECCCSSC
T ss_pred CCCEEEEE---CCCCCEEEEECCCCE
T ss_conf 99988895---789927888559980
No 29
>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]}
Probab=23.24 E-value=12 Score=14.98 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=27.3
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 48989999999999999999999728977999879864
Q gi|254780505|r 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLT 46 (234)
Q Consensus 9 ~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~i~lsGGst 46 (234)
++-+++-+-.+++.+.+.++++ ..+....+.+|||.|
T Consensus 87 HP~Pd~~s~~Aa~~il~~~~~~-~~~Dlvl~LISGGgS 123 (414)
T d2b8na1 87 HPVPDENTIKTTRRVLELVDQL-NENDTVLFLLSGGGS 123 (414)
T ss_dssp SSSCCHHHHHHHHHHHHHHSSC-CTTCEEEEEECTTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCC
T ss_conf 9999877999999999999648-988768998508854
No 30
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.83 E-value=19 Score=13.70 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=56.7
Q ss_pred CEEEE-ECCCCCCCCC-------CCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 23899-8132100356-------732027889997623567763214445887898999999999996315877648994
Q gi|254780505|r 63 KVVVT-LVDERFVPLE-------NLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVL 134 (234)
Q Consensus 63 kv~~~-~~DER~V~~~-------~~~Sn~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~lL 134 (234)
||-++ -+|| +|+++ -.+||..++...|-+.. .......... .+.++-.+..++.+.. .|+++.
T Consensus 2 rV~iistG~E-l~~~~~~~~~g~i~dsN~~~l~~~l~~~G-~~v~~~~~v~--Dd~~~i~~~l~~~~~~-----~Dliit 72 (155)
T d2ftsa3 2 VVAVMSTGNE-LLNPEDDLLPGKIRDSNRSTLLATIQEHG-YPTINLGIVG--DNPDDLLNALNEGISR-----ADVIIT 72 (155)
T ss_dssp CEEEEEECTT-EECTTSCCCTTCEECCHHHHHHHHHHTTT-CCEEEEEEEC--SSHHHHHHHHHHHHHH-----CSEEEE
T ss_pred EEEEEECCHH-CCCCCCCCCCCCEEECHHHHHHHHHCCCC-CCEEEEEEEC--CCHHHHHHHHHHHHCC-----CCEEEE
T ss_conf 8999968831-06899869999586061999999733456-5517888844--7614779999986504-----677998
Q ss_pred ----CCCCCCCEEEECCCCCCCEEECCCCCCCCEEEECCCCCCCEEEEECHHHHHCCCEEEEEEECHHHHHHH
Q ss_conf ----478877143402786410022156674318995389987215870878884158299998183489999
Q gi|254780505|r 135 ----GMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVL 203 (234)
Q Consensus 135 ----GiG~DGH~ASlFP~~~~l~~~~~~~~~~~~~~~~~~~~p~~RITlt~~~l~~a~~i~ll~~G~~K~~al 203 (234)
|+|.+-++....-. .+.. .-.-.-+... +.+| .+++.-.....++.+|...|.-.+..+
T Consensus 73 tGG~s~g~~D~~~~~l~~--~~~~----~~~f~~v~~~-PG~p---~~~g~~~~~~~~~~v~~LPG~P~a~~~ 135 (155)
T d2ftsa3 73 SGGVSMGEKDYLKQVLDI--DLHA----QIHFGRVFMK-PGLP---TTFATLDIDGVRKIIFALPGNPVSAVV 135 (155)
T ss_dssp ESCCSSSCCHHHHHHHHT--TTCC----EEEESEEECB-SCTT---CEEEEEEETTEEEEEEEECSSHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHH--HCCE----EEEECHHHHH-HCCH---HHEEECCCCCCCCEEEECCCCCHHHHH
T ss_conf 346667740455999973--0230----3553213443-0222---122431457887658977998099999
No 31
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=22.16 E-value=20 Score=13.62 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=17.0
Q ss_pred ECHHHHHHHHHHHCCCCCCCCCHHHHHHCC
Q ss_conf 183489999999808983206089996189
Q gi|254780505|r 195 EGTQKKHVLEKAISGDDALEMPIRAILWNA 224 (234)
Q Consensus 195 ~G~~K~~al~~~l~~~~~~~~Pas~ll~~~ 224 (234)
.+=.|.++.+-+.+-+ +|-+.+-.+|
T Consensus 170 ~~l~K~eV~~lA~~lg----lP~~i~~~~p 195 (197)
T d1gpma1 170 KELFKDEVRKIGLELG----LPYDMLYRHP 195 (197)
T ss_dssp TTCCHHHHHHHHHHTT----CCHHHHTSCC
T ss_pred CCCCHHHHHHHHHHCC----CCHHHHCCCC
T ss_conf 4886999999999829----8999948999
No 32
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.64 E-value=21 Score=13.43 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=26.5
Q ss_pred HHCCCEEEEECCCC-CHHHHH-----HHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 72897799987986-469999-----878763079532389981321003
Q gi|254780505|r 32 TNKGTASIALSGGL-TPRFFL-----EELSIINVDWHKVVVTLVDERFVP 75 (234)
Q Consensus 32 ~~~~~~~i~lsGGs-tp~~~y-----~~L~~~~~~w~kv~~~~~DER~V~ 75 (234)
..+..+.||++||+ |.+..+ +.|.+..-.-.++.++-.|..+.+
T Consensus 23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t 72 (286)
T d1odfa_ 23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT 72 (286)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 89998899837998788999999999999987277860676356777788
No 33
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.64 E-value=21 Score=13.43 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHH-HHHHH
Q ss_conf 99999999999972897799987986-469999-87876
Q gi|254780505|r 20 AKKVAEQLSIGITNKGTASIALSGGL-TPRFFL-EELSI 56 (234)
Q Consensus 20 a~~i~~~i~~~i~~~~~~~i~lsGGs-tp~~~y-~~L~~ 56 (234)
.+.+.+.+. +++.++.+.|+++||+ +.+..+ +.|.+
T Consensus 7 ~~~~~~~~~-~~~~~~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 7 IDFLCKTIL-AIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp HHHHHHHHH-TSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999998-52679988999789887899999999999
Done!