RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase
[Candidatus Liberibacter asiaticus str. psy62]
         (234 letters)



>gnl|CDD|73166 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
           6PGL catalyzes the second step of the oxidative phase of
           the pentose phosphate pathway, the hydrolyzation of
           6-phosphoglucono-1,5-lactone (delta form) to
           6-phosphogluconate. 6PGL is thought to guard against the
           accumulation of the delta form of the lactone, which may
           be toxic through its reaction with endogenous cellular
           nucleophiles..
          Length = 219

 Score =  185 bits (472), Expect = 7e-48
 Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 11/222 (4%)

Query: 15  LAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN-VDWHKVVVTLVDERF 73
           LA+ LA ++AE L+  I  +G  S+ALSGG TP+   E L+    +DW KV V L DER 
Sbjct: 3   LAEALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAAPALDWSKVHVFLGDERC 62

Query: 74  VPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLI--HFPFDV 131
           VP ++  SN     +  L + A  A+ I     +   E+A     +++  L     PFD+
Sbjct: 63  VPPDDPDSNYRLAREALLSHVAIPAANIHPIPTELGPEDAAAAYEKELRALFGGVPPFDL 122

Query: 132 VVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKD-YTSNEQRMTMTFSALHDAQFL 190
           V+LGMG DGHTAS FP       AL   T R V+A+ D      +R+T+T   L++A+ +
Sbjct: 123 VLLGMGPDGHTASLFPGHP----ALLEETDRLVVAVTDSPKPPPERITLTLPVLNNARRV 178

Query: 191 ALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHW 232
              + G +K   L++A++G D  E+P   +L     P EV W
Sbjct: 179 VFLVTGAEKAEALKRALAGPDPEELPAARVL---PRPGEVLW 217


>gnl|CDD|30712 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate
           isomerase/deaminase [Carbohydrate transport and
           metabolism].
          Length = 238

 Score =  164 bits (416), Expect = 2e-41
 Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 7/232 (3%)

Query: 4   YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS---IINVD 60
            KL + E+ + LA+  A+ +A++L      +G A +ALSGG TP    E L       +D
Sbjct: 1   MKLIIFEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGGSTPLALYEALVKLPQGQLD 60

Query: 61  WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK 120
           W KV +  +DER VP ++  SN   + +    +    A FI  +    +  +A   A  +
Sbjct: 61  WSKVTIFNLDERVVPPDDPESNYGLMRRNLFDHIDIPAEFI--HNGDASDPDAECAARYE 118

Query: 121 ICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMT 180
                   FD+++LGMG DGH AS FP    L  A        V         ++R+T+T
Sbjct: 119 AKLPSAGGFDLILLGMGEDGHIASLFPGTPALDSATTEEANSRVFVGDSPKVPKERITLT 178

Query: 181 FSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHW 232
              + DA+ + L + G +K   L++A+ G      P   +       +    
Sbjct: 179 LPTILDAKEVLLLVTGEEKADALKQALEGPVTELYPASIL--QLHPNVTWFL 228


>gnl|CDD|38357 KOG3147, KOG3147, KOG3147, 6-phosphogluconolactonase - like protein
           [Carbohydrate transport and metabolism].
          Length = 252

 Score = 93.8 bits (233), Expect = 4e-20
 Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 16/224 (7%)

Query: 5   KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEEL---SIINVDW 61
           K+ V  +++ L + LA  +AE+    +  +G  ++ALSGG   +   + L      ++DW
Sbjct: 10  KVIVFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGGSLIQVLSKLLESPYQDDIDW 69

Query: 62  HKVVVTLVDERFVPLENLRSNQS-FISKFFLQNKAQKASFIPL-YYPQKTIEEAIRIANE 119
            K  +  VDER VPL++  SN       F  +      +  P+        EEA  +  +
Sbjct: 70  SKWHIFFVDERVVPLDDPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEK 129

Query: 120 KICQLI---HFP-FDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTS-NE 174
           ++  L+    FP FD+++LGMG DGHTAS FP    L+  L       V+ I D      
Sbjct: 130 ELKALVANDSFPVFDLLLLGMGPDGHTASLFPGHPLLNEKLKW-----VVPITDSPKPPP 184

Query: 175 QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIR 218
           +R+T+T   ++ A+ +A  + G  K  ++ KAI  D   ++P  
Sbjct: 185 KRITLTLPVINHAKNVAFVVCGASKAEIV-KAILEDKEKKLPAA 227


>gnl|CDD|73165 cd01399, GlcN6P_deaminase, GlcN6P_deaminase:
           Glucosamine-6-phosphate (GlcN6P) deaminase subfamily;
           GlcN6P deaminase catalyzes the reversible conversion of
           GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium.
           The reaction is an aldo-keto isomerization coupled with
           an amination or deamination. It is the last step of the
           metabolic pathway of N-acetyl-D-glucosamine-6-phosphate
           (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that
           is allosterically activated by GlcNAc6P..
          Length = 232

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 20/215 (9%)

Query: 17  QKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEEL----SIINVDWHKVVVTLVDER 72
           +++++  AE ++  I  K  A + L+ G TP    EEL        + +  V    +DE 
Sbjct: 1   EEMSEAAAELIAELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDE- 59

Query: 73  FVPL--ENLRSNQSFISK-FFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPF 129
           +V L  ++ +S   F+ +  F     +  +          +E   R     I +      
Sbjct: 60  YVGLPPDHPQSYHYFMRENLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAE--AGGI 117

Query: 130 DVVVLGMGIDGHTA------SFFPKGDTLSIALDTHTPRSVIAIKDYTSN--EQRMTMTF 181
           D+ +LG+G +GH        S   +  T  + LD  T ++     D   +   Q +TM  
Sbjct: 118 DLQLLGIGENGHIGFNEPGSSLDSR--TRVVTLDESTRQANARFFDGDEDVPTQAITMGI 175

Query: 182 SALHDAQFLALHIEGTQKKHVLEKAISGDDALEMP 216
             +  A+ + L   G  K   ++KA+ G    E P
Sbjct: 176 GTIMKAKEILLLATGEGKAEAVKKALEGPVTEECP 210


>gnl|CDD|31350 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy
           production and conversion].
          Length = 463

 Score = 30.6 bits (69), Expect = 0.35
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 22/139 (15%)

Query: 72  RFVPLENLRSNQSFISKFFLQNKAQKASFIPLY----YPQKTIEEAIRIANEKICQLIHF 127
           R  P E +++  S I       + QK   +P++     P   +  A +IA +        
Sbjct: 123 RIYPEEFIQTGISAIDGMNTLVRGQK---LPIFSGSGLPHNEL--AAQIARQATVDGEEE 177

Query: 128 PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNE---QRMTMTFSAL 184
            F VV   MGI    A FF      + ALD    R+V+ +    +++   +R+     AL
Sbjct: 178 EFAVVFAAMGITHEEALFFMDEFEETGALD----RAVLFLN--LADDPAVERIITPRMAL 231

Query: 185 HDAQFLALHIEGTQKKHVL 203
             A++LA      +  HVL
Sbjct: 232 TVAEYLAFE----KDMHVL 246


>gnl|CDD|30001 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic)
           subunit B. These ATPases couple ATP hydrolysis to the
           build up of a H+ gradient, but V-type ATPases do not
           catalyze the reverse reaction. The Vacuolar (V-type)
           ATPase is found in the membranes of vacuoles, the golgi
           apparatus and in other coated vesicles in eukaryotes.
           Archaea have a protein which is similar in sequence to
           V-ATPases, but functions like an F-ATPase (called
           A-ATPase).  A similar protein is also found in a few
           bacteria. This subfamily consists of the non-catalytic
           beta subunit..
          Length = 276

 Score = 29.4 bits (66), Expect = 0.99
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 22/139 (15%)

Query: 72  RFVPLENLRSNQSFISKFFLQNKAQKASFIPLY----YPQKTIEEAIRIANEKICQLIHF 127
           R  P E +++  S I       + QK   IP++     P   +  A +IA +        
Sbjct: 46  RIYPEEMIQTGISAIDGMNTLVRGQK---IPIFSGSGLPHNEL--AAQIARQAGVVGEEE 100

Query: 128 PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNE---QRMTMTFSAL 184
            F VV   MGI    A FF      + AL+    R V+ +    +N+   +R+     AL
Sbjct: 101 NFAVVFAAMGITMEDARFFKDDFEETGALE----RVVLFLN--LANDPTIERIITPRMAL 154

Query: 185 HDAQFLALHIEGTQKKHVL 203
             A++LA      + KHVL
Sbjct: 155 TTAEYLAY----EKGKHVL 169


>gnl|CDD|110200 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate
           isomerases/6-phosphogluconolactonase. 
          Length = 236

 Score = 28.7 bits (64), Expect = 1.4
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 63  KVVVTLVDERFV--PLENLRSNQSFI-SKFFLQNKAQKASFIPLYYPQKTIEEAIRIANE 119
           K VVT   + +V  P E+  S  SF+ + FF        +   L      I+   R   E
Sbjct: 50  KHVVTFNMDEYVGLPPEHPESYHSFMYNNFFNHIDIPPENIHILNGNAADIDAECRNYEE 109

Query: 120 KICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS--IALDTHTPRSVIAIKDYTSNEQR- 176
           KI    +    + + G+G DGH A F   G +L+    + T T  ++ A   +  N+   
Sbjct: 110 KIKS--YGKIHLFMGGVGPDGHIA-FNEPGSSLNSRTRIKTLTEDTIKANSRFFDNDVTK 166

Query: 177 -----MTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209
                +T+    L DA+ + + + G QK   L+KA+ G
Sbjct: 167 VPKYALTVGVGTLLDAEEVMILVLGKQKAFALQKAVEG 204


>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 352

 Score = 27.5 bits (61), Expect = 2.8
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 20/138 (14%)

Query: 68  LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHF 127
           L+DE    L+  R  +      +L+    + + IP+ Y   +++E +R+A+         
Sbjct: 151 LMDEPLASLDLPRKREILP---YLERLRDEIN-IPILYVSHSLDEVLRLADR-------- 198

Query: 128 PFDVVVLGMGI---DGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSAL 184
              VVVL  G     G     +   D     L      SV+       ++ R  +T  AL
Sbjct: 199 ---VVVLENGKVKASGPLEEVWGSPD-FPPWLPREEQSSVLEGT-VLEHDPRYGLTALAL 253

Query: 185 HDAQFLALHIEGTQKKHV 202
            D       ++      +
Sbjct: 254 GDQHLWVPKLDAPVGARL 271


>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
           Kinase, c-Jun N-terminal Kinase 2.  Serine/Threonine
           Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
           subfamily, catalytic (c) domain. STKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           serine/threonine residues on protein substrates. The
           JNK2 subfamily is part of a larger superfamily that
           includes the catalytic domains of other protein STKs,
           protein tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. JNKs are mitogen-activated protein kinases
           (MAPKs) that are involved in many stress-activated
           responses including those during inflammation,
           neurodegeneration, apoptosis, and persistent pain
           sensitization, among others. Vetebrates harbor three
           different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
           JNK2, is expressed in every cell and tissue type.
           Initially it was thought that JNK1 and JNK2 were
           functionally redundant as mice deficient in either genes
           (Jnk1 or Jnk2) could survive but disruption of both
           genes resulted in lethality. However, recent studies
           have shown that JNK1 and JNK2 perform distinct functions
           through specific binding partners and substrates.  JNK2
           is specifically translocated to the mitochondria during
           dopaminergic cell death. Specific substrates include the
           microtubule-associated proteins DCX and Tau, as well as
           TIF-IA which is involved in ribosomal RNA synthesis
           regulation. Mice deficient in Jnk2 show protection
           against arthritis, type 1 diabetes, atherosclerosis,
           abdominal aortic aneurysm, cardiac cell death,
           TNF-induced liver damage, and tumor growth, indicating
           that JNK2 may play roles in the pathogenesis of these
           diseases.
          Length = 359

 Score = 27.7 bits (61), Expect = 3.1
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 99  SFIPLYYPQKTIEE------AIRIANEKICQLIHFPFD 130
           S + ++ PQK++EE       + + +  +CQ+IH   D
Sbjct: 84  SLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHMELD 121


>gnl|CDD|36040 KOG0822, KOG0822, KOG0822, Protein kinase inhibitor [Cell cycle
           control, cell division, chromosome partitioning].
          Length = 649

 Score = 27.3 bits (60), Expect = 4.0
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 99  SFIPLYYPQKTIE-----EAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS 153
           ++  L  PQ             + N +  + + F      +  G  G+  +   K   LS
Sbjct: 514 NYCILAEPQPVFTFEHPNFDFNVDNSR-SKSVEFKVKSNGVLHGFAGYFDAVLYKDIFLS 572

Query: 154 IALDTHTPR------SVIAIKD--YTSNEQRMTMTFSALHDAQ 188
           I  +THTP           +K          +++ F    D+ 
Sbjct: 573 IEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDST 615


>gnl|CDD|176341 cd01265, PH_PARIS-1, PARIS-1 pleckstrin homology (PH) domain.
           PARIS-1 pleckstrin homology (PH) domain. PARIS-1
           contains a  PH domain and a TBC-type GTPase catalytic
           domain.  PH domains share little sequence conservation,
           but all have a common fold, which is electrostatically
           polarized. PH domains also have diverse functions. They
           are often involved in targeting proteins to the plasma
           membrane, but few display strong specificity in lipid
           binding.  Any specificity is usually determined by loop
           regions or insertions in the N-terminus of the domain,
           which are not conserved across all PH domains.
          Length = 95

 Score = 27.2 bits (60), Expect = 4.5
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 119 EKICQLIHF--PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQR 176
           ++ C L ++    D   LG  +D   A+F           + H+   VIA+K   S++++
Sbjct: 26  DRTCYLYYYKDSQDAKPLG-RVDLSGAAFTYDPREEKGRFEIHSNNEVIALK--ASSDKQ 82

Query: 177 MTMTFSAL 184
           M     AL
Sbjct: 83  MNYWLQAL 90


>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
           semialdehyde dehydrogenase and related proteins.  ALDH
           subfamily which includes the NAD+-dependent,
           alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
           EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
           ALDH7B or delta-1-piperideine-6-carboxylate
           dehydrogenase (P6CDH), and other similar sequences, such
           as the uncharacterized aldehyde dehydrogenase of
           Candidatus kuenenia AldH (locus CAJ73105).
          Length = 478

 Score = 26.8 bits (60), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 95  AQKASFIPLYY--PQKTIEEAIRIANE 119
            Q+ +F P+ Y     ++EEAI I N+
Sbjct: 375 VQEETFAPILYVIKFDSLEEAIAINND 401


>gnl|CDD|36524 KOG1310, KOG1310, KOG1310, WD40 repeat protein [General function
           prediction only].
          Length = 758

 Score = 26.3 bits (57), Expect = 6.9
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 128 PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMT 178
           P    +   GID     + P+    S A   H P S   +     N Q+ +
Sbjct: 676 PRCPTLATSGIDSTIKIWSPEATPPSGASRNHRPNSYAIVATNEMNRQQGS 726


>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
           dehydrogenase-like.  The 6-oxolauric acid dehydrogenase
           (CddD) from Rhodococcus ruber SC1 which converts
           6-oxolauric acid to dodecanedioic acid, and the aldehyde
           dehydrogenase (locus SSP0762) from Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305 and other
           similar sequences, are included in this CD.
          Length = 466

 Score = 26.3 bits (59), Expect = 7.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 106 PQKTIEEAIRIAN 118
           P    +EAI IAN
Sbjct: 383 PYDDEDEAIAIAN 395


>gnl|CDD|38358 KOG3148, KOG3148, KOG3148, Glucosamine-6-phosphate isomerase
           [Carbohydrate transport and metabolism].
          Length = 273

 Score = 26.2 bits (57), Expect = 7.5
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 130 DVVVLGMGIDGHTASFFPKGDTL-------SIALDTHTPRSVIAIKDYTS-NEQRMTMTF 181
           D+ V G+G DGH A F   G +L       ++A+DT    +     D T    Q +T+  
Sbjct: 132 DLFVGGIGPDGHIA-FNEPGSSLVSRTRVKTLAMDTILANARFFDGDLTKVPTQALTVGV 190

Query: 182 SALHDAQFLALHIEGTQKKHVLEKAI 207
             + DA+ + + I G  K   L KAI
Sbjct: 191 GTVMDAREVMILITGAHKAFALYKAI 216


>gnl|CDD|143938 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family of
           dehydrogenases act on aldehyde substrates. Members use
           NADP as a cofactor. The family includes the following
           members: The prototypical members are the aldehyde
           dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
           dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
           EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
           Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
           Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
           Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
           1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
           Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
           family also includes omega crystallin, an eye lens
           protein from squid and octopus that has little aldehyde
           dehydrogenase activity.
          Length = 459

 Score = 26.0 bits (58), Expect = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 108 KTIEEAIRIAN 118
           K  +EAI +AN
Sbjct: 378 KDEDEAIELAN 388


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,749,264
Number of extensions: 139693
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 21
Length of query: 234
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 143
Effective length of database: 4,297,318
Effective search space: 614516474
Effective search space used: 614516474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)