RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase
[Candidatus Liberibacter asiaticus str. psy62]
(234 letters)
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria
gonorrhoeae} (A:)
Length = 232
Score = 154 bits (390), Expect = 1e-38
Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 1/229 (0%)
Query: 4 YKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHK 63
+ + EN AQ LA VA+ L + KG A +A+SGG +P F LS ++DW
Sbjct: 3 FVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQKDLDWKN 62
Query: 64 VVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQ 123
V +TL DER VP + SN + ++ L+NKA A +IP KT E A
Sbjct: 63 VGITLADERIVPTNHADSNTGLVREYLLKNKAAAAVWIPXVEDGKTETELHPDAVVDYAL 122
Query: 124 LIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSA 183
+ DV++LG G DGHTAS FPK A+D +++ T+ +R++ T A
Sbjct: 123 KHYKQPDVLILGXGNDGHTASIFPKAPQFQTAIDGSAGVALVHTTPVTAPHERISXTLDA 182
Query: 184 LHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHW 232
+ + L I+G +KK V ++A G++ E PI +L + V +
Sbjct: 183 IAHTGHVFLAIQGEEKKAVFDQAAQGENR-EYPISLVLNHQGVNCHVFY 230
>3e15_A Glucose-6-phosphate 1-dehydrogenase;
6-phosphogluconolactonase, malaria, carbohydrate
metabolism, glucose metabolism, NADP, oxidoreductase,;
HET: MSE; 2.00A {Plasmodium vivax} (A:)
Length = 312
Score = 134 bits (338), Expect = 1e-32
Identities = 50/270 (18%), Positives = 89/270 (32%), Gaps = 42/270 (15%)
Query: 1 MLQYKLYVAENKKRLAQKLAKKVAEQLS--IGITNKGTASIALSGGLTPRFFLEELSII- 57
+ K A++ QK A + Q++ G I LSGG TP + ++++
Sbjct: 24 LHNVKYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVK 83
Query: 58 --NVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIR 115
+D K++ ++DER+ ++ SN + I F K + + K I E +R
Sbjct: 84 DIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQLYRPDTSKNIVECVR 143
Query: 116 IANEKICQLIHF--PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSN 173
NEKI + D+ +LG G D H AS FP + +N
Sbjct: 144 DYNEKIKNXVKKYTKVDIAILGXGSDFHIASLFPNIFFNIYXNNYQNSYIYDESSIKVAN 203
Query: 174 ---------------------------EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKA 206
+R+T++ L +A + T K + +
Sbjct: 204 SNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSKIFLLNSTDKLDLWKNX 263
Query: 207 ISGD----DALEMPIRAILWNAQSPLEVHW 232
+ + P +
Sbjct: 264 LLKSYVDVNYCLYPAVYL----IDSXNTTV 289
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural
genomics, JCSG, protein structure initiative, PSI, joint
center for structural genomics; HET: CIT; 1.55A
{Thermotoga maritima} (A:)
Length = 232
Score = 134 bits (338), Expect = 1e-32
Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 10/221 (4%)
Query: 1 MLQYKLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVD 60
K + + + +K+ ++ + K + L+GG TP E+L+
Sbjct: 11 HHMEKTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFP 70
Query: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK 120
W+++ L DER+VPL++ +SN I++ + + IE+A +
Sbjct: 71 WNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYERE 130
Query: 121 ICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMT 180
I FD+ +LGMG DGH AS F + R+T+T
Sbjct: 131 IRSA-TDQFDLAILGMGPDGHVASIFDLETGNK-----DNLVTFTDPSGD-PKVPRVTLT 183
Query: 181 FSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221
F AL+ + ++ I G +K + L + + +P +
Sbjct: 184 FRALNTSLYVLFLIRGKEKINRLTEILKDTP---LPAYFVR 221
>3css_A 6-phosphogluconolactonase; structural genomics, medical
structural genomics of pathogenic protozoa consortium,
SGPP, leishmaniasis; 1.70A {Leishmania braziliensismhom}
PDB: 3ch7_A (A:)
Length = 267
Score = 132 bits (333), Expect = 4e-32
Identities = 46/253 (18%), Positives = 89/253 (35%), Gaps = 27/253 (10%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN---VDW 61
+ + EN +++ + + + + +ALSGG TP+ EEL + +
Sbjct: 7 TVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKDLALLQQ 66
Query: 62 HKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQK-----------TI 110
H V L DER + ++ +SN S +K L++
Sbjct: 67 HAVQFILGDERLLSEDDEQSNFSMATKALLRDVPSSDVISIDRRAALATSKDEKGGLDGA 126
Query: 111 EEAIRIANEKICQLI-----------HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTH 159
+ K+ + D+V+LG G DGHTAS FP +
Sbjct: 127 WAVAQDYEVKLLNCLPCKQINGTAKSVPVVDIVLLGFGSDGHTASIFPDSVAATDEEHVV 186
Query: 160 TPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRA 219
+ R+T++ + + A+ + + G K V+ +S +P+
Sbjct: 187 SVSFPSPTMS--PKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESPTDPLPVSR 244
Query: 220 ILWNAQSPLEVHW 232
L + + + +
Sbjct: 245 FLRDCRGSVTLLL 257
>1y89_A DEVB protein; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics,
MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor
str} (A:)
Length = 238
Score = 128 bits (322), Expect = 7e-31
Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 20/238 (8%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS----IINVD 60
+ + + LA I+LSGG TP+ + L+ ++
Sbjct: 3 NHKIFPTADAVVKSLADDXLAY----SQQGQPVHISLSGGSTPKXLFKLLASQPYANDIQ 58
Query: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK 120
W + DER V ++ SN + A I + + +
Sbjct: 59 WKNLHFWWGDERCVAPDDAESNYGEANALLFSKINXPAQNIHRILGENEPQAEAERFAQA 118
Query: 121 ICQLIHF-----PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQ 175
+I FD ++LG+G DGHTAS FP SV+A S +
Sbjct: 119 XAHVIPTENGTPVFDWILLGVGADGHTASLFPGQT-----DYADANLSVVASHPE-SGQL 172
Query: 176 RMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHWT 233
R++ T L A+ ++ + G K ++E+ + ++P A ++ S + +
Sbjct: 173 RVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAE-QLPYPAAKIHSTSGVTEWYL 229
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode,
UW, SBRI, infectious disease, LYME disease, non-hodgkin
lymphomas; 2.20A {Borrelia burgdorferi B31} (A:)
Length = 289
Score = 127 bits (319), Expect = 2e-30
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 18/241 (7%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLS-IGITNKGTASIALSGGLTPRFFLEELS----IINV 59
+L + + +++ A VA++++ T + + L G +P + L +
Sbjct: 23 RLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKI 82
Query: 60 DWHKVVVTLVDER-FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIAN 118
+ V+ +DE + + S SF+ F + K I + + +
Sbjct: 83 SFQNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEEY 142
Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFPK----GDTLSIALDTHTPRSVIAIKDYTSNE 174
EK + + V G+G DGH A P T L T + + N+
Sbjct: 143 EKKIKS-FGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTIIANSRFFEGDVNK 201
Query: 175 ---QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231
+T+ + D+Q + + + G K L+ AI I A+ +
Sbjct: 202 VPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGVNHMWTISALQLHK----NAI 257
Query: 232 W 232
Sbjct: 258 I 258
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate
inhibition, fructose-6-phosphate; HET: F6R; 1.4A
{Bacillus subtilis} PDB: 2bkv_A* (A:)
Length = 242
Score = 123 bits (309), Expect = 2e-29
Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 16/228 (7%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS----IINVD 60
K+ + + L+Q A+ A+ I K A + L+ G TP +L N+
Sbjct: 2 KVMECQTYEELSQIAARITADT----IKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLS 57
Query: 61 WHKVVVTLVDERFV-PLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANE 119
+ + +DE ++ S +++ F Q+ K S + EA E
Sbjct: 58 FQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYE 117
Query: 120 KICQLIHFPFDVVVLGMGIDGHTASFFP----KGDTLSIALDTHTPRSVIAIKDYTSN-- 173
++ + D+ +LG+G +GH P K T + L+ T ++ +
Sbjct: 118 QLVDSLGD-TDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPSIDSVP 176
Query: 174 EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221
++ +TM + ++ + L I G K + K + G+ + + P A+
Sbjct: 177 KKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALH 224
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric
enzyme, conformational disorder, conformational
differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo
sapiens} (A:)
Length = 289
Score = 122 bits (308), Expect = 3e-29
Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 20/242 (8%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLS-IGITNKGTASIALSGGLTPRFFLEELS----IINV 59
KL + E+ + ++ AK + ++ + ++ L G TP ++L ++
Sbjct: 2 KLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDL 61
Query: 60 DWHKVVVTLVDERFVPLE-NLRSNQSFISKFFLQNKAQKAS-FIPLYYPQKTIEEAIRIA 117
+ V +DE + S SF+ F ++ L ++
Sbjct: 62 SFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAF 121
Query: 118 NEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS----IALDTHTPRSVIAIKDYTSN 173
EKI ++ V G+G DGH A P +S L T + D
Sbjct: 122 EEKIKA--AGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELT 179
Query: 174 E---QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEV 230
+ +T+ + DA+ + + I G K L KAI + A +
Sbjct: 180 KVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHP----RT 235
Query: 231 HW 232
+
Sbjct: 236 VF 237
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose
phosphate pathway, hydrolase, zinc binding site; HET:
FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
(A:)
Length = 266
Score = 122 bits (308), Expect = 3e-29
Identities = 47/251 (18%), Positives = 90/251 (35%), Gaps = 24/251 (9%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELS----IINVD 60
+ V + L+ +K+ E + + + SIAL+GG TP+ L + +
Sbjct: 6 TISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLRE 65
Query: 61 WHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTI--------EE 112
+ + DER VP ++ SN + + L + F
Sbjct: 66 KRALRFFMGDERMVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADAMR 125
Query: 113 AIRIANEKICQLI-----------HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTP 161
+++ L+ FDVV+LG+G DGHTAS FP
Sbjct: 126 VAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVV 185
Query: 162 RSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221
+ R+T++ + + A+ + + G +KK V++ ++ + P+ L
Sbjct: 186 SVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAH-KAPVARFL 244
Query: 222 WNAQSPLEVHW 232
+ +
Sbjct: 245 RGCEGNVSFLL 255
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease,
niaid, hydrolase, structural genomics; 2.15A
{Mycobacterium tuberculosis} (A:)
Length = 268
Score = 122 bits (307), Expect = 4e-29
Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 16/229 (6%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIIN--VDWH 62
+ + + L K++ + + +G A I L+GG L LS ++W
Sbjct: 25 SIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQAQQIEWS 84
Query: 63 KVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQ-----KTIEEAIRIA 117
KV + DER+VP ++ N + L + ++ + ++ A
Sbjct: 85 KVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAY 144
Query: 118 NEKICQLIHF-----PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTS 172
+ + FDV +LGMG +GH S FP S A+ T V
Sbjct: 145 EQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFP----HSPAVLESTRMVVAVDDSPKP 200
Query: 173 NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221
+R+T+T A+ ++ + L + G K + AI G D + +P +
Sbjct: 201 PPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAV 249
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme,
entropic effects, aldose-ketose isomerase, multiple
conformers; HET: 16G TLA; 1.73A {Escherichia coli} (A:)
Length = 266
Score = 118 bits (297), Expect = 5e-28
Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTAS-IALSGGLTPRFFLEELS----IINV 59
+L +++ + A+ + +++ + L G TP + L V
Sbjct: 2 RLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQV 61
Query: 60 DWHKVVVTLVDER-FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIAN 118
+ VV +DE +P E+ S SF+ + F + A I L +A
Sbjct: 62 SFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQY 121
Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLS------IALDTHTPRSVIAIKDYTS 172
E+ + + + G+G DGH A P S + DT S D
Sbjct: 122 EEKIRSYGK-IHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ 180
Query: 173 N-EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVH 231
+ +T+ L DA+ + + + G+QK L+ A+ G I + + +
Sbjct: 181 VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHP----KAI 236
Query: 232 W 232
Sbjct: 237 M 237
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,
hydrolase; HET: BTB; 1.60A {Streptococcus mutans} PDB:
2ri1_A* (A:)
Length = 234
Score = 114 bits (286), Expect = 1e-26
Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 16/224 (7%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKV 64
K +NK ++ + + E++ G ++ L+ G TP +E+ ++D+ +
Sbjct: 3 KTIKVKNKTEGSKVAFRMLEEEI-----TFGAKTLGLATGSTPLELYKEIRESHLDFSDM 57
Query: 65 VVTLVDE-RFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQ 123
V +DE + ++ +S F+ + K K S++P +E ++I
Sbjct: 58 VSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPNGLAADLAKETEY--YDQILA 115
Query: 124 LIHFPFDVVVLGMGIDGHTASFFPKGDTLS------IALDTHTPRSVIAIKDYTSNEQRM 177
+P D+ +LG+G + H P S + T S K +Q +
Sbjct: 116 --QYPIDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAI 173
Query: 178 TMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAIL 221
+M +++ A+ + L G +K + + G E+P +
Sbjct: 174 SMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQ 217
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.70A {Vibrio fischeri ES114} (A:)
Length = 267
Score = 82.5 bits (203), Expect = 5e-17
Identities = 18/221 (8%), Positives = 47/221 (21%), Gaps = 22/221 (9%)
Query: 6 LYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVV 65
N +++A V+ L+ + +A+ G + I+ + V
Sbjct: 28 SLDQPNTNEQRKQVAALVSSYLNNNLQEGXA--VAVGQGQNVAAVADHAGIVTQRNARFV 85
Query: 66 VTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLI 125
N I + + + + +
Sbjct: 86 ---SAIGGTHRSGDIINADHICRRLAKKYGGSSETLYAPAYVNDPSLRSAFXEHATIKET 142
Query: 126 HF---PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVI--------------AIK 168
+ ++G+G + G I
Sbjct: 143 LSQARKAEFALVGIGDXDENSHXVKLGFFTPKEFVEARLNDGIVGDIGGFDFFKLDGTDA 202
Query: 169 DYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209
D + + + L + ++K + A+
Sbjct: 203 DTLXRGRVIGLEXEDLRQIPNVVAXASESRKALSIXGALRT 243
>2gnp_A Transcriptional regulator; structural genomics, MCSG,
APC84799, PSI, protein structure initiative; 1.65A
{Streptococcus pneumoniae TIGR4} (A:)
Length = 266
Score = 74.5 bits (182), Expect = 1e-14
Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 23/236 (9%)
Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67
+ L++++++ A L I I S G + ++ + + V
Sbjct: 32 FDDTPTILSERISQVAAGVLRNLI--DDNXKIGFSWGKSLSNLVDLI--HSKSVRNVHFY 87
Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKA-SFIPLYYPQKTIEEAIRIANEKICQL-I 125
+ + + I + + + + K + + I +
Sbjct: 88 PLAGGPSHIHAKYHVNTLIYEXSRKFHGECTFXNATIVQENKLLADGILQSRYFENLKNS 147
Query: 126 HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIA------------IKDYTSN 173
D+ V+G+G + T +
Sbjct: 148 WKDLDIAVVGIGDFSNKGKHQWLDXLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQ 207
Query: 174 EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDAL-----EMPIRAILWNA 224
E+ + ++ L + G K + + + + I +L
Sbjct: 208 ERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEED 263
>2r5f_A Transcriptional regulator, putative; transcription
regulator, sugar-binding domain, structural genomics,
PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} (A:)
Length = 264
Score = 74.4 bits (182), Expect = 1e-14
Identities = 24/218 (11%), Positives = 61/218 (27%), Gaps = 19/218 (8%)
Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67
++++ + Q + A L ++ + I+ S T R + V
Sbjct: 32 EPDDEESIKQAIGSAAAHYLETSLSAQDHIGIS-SWSSTIRAXVSHXHPQPGKQSAQEV- 89
Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH- 126
V + +++ A +P ++++E RI + + +
Sbjct: 90 -VQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQSIEQSVESKQRIVEXEEVKEVLH 148
Query: 127 --FPFDVVVLGMGIDGHTASFFPKG----DTLSIALDTHT---------PRSVIAIKDYT 171
+ ++G+G + G + L +
Sbjct: 149 RFDSITLAIVGIGELEPSQLLRNSGNYYTEDXLRVLAERGAVGDICLRYFDAQGKPVLEE 208
Query: 172 SNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209
E ++ L + G +K ++ A+ G
Sbjct: 209 DEEFVVSXGLGKLRSINRVLGLAGGVRKVQAIKGALLG 246
>2w48_A Sorbitol operon regulator; SORC, activator, repressor,
DNA-binding, transcription, transcription regulator,
transcription regulation; 3.20A {Klebsiella pneumoniae}
(A:55-315)
Length = 261
Score = 72.2 bits (176), Expect = 5e-14
Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 18/217 (8%)
Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67
++ + + A + + + I S G R +E L +V+
Sbjct: 30 DGLLEEEQLSAMGQHGALLVDRLL--EPGDIIGFSWGRAVRSLVENL-PQRSQSRQVICV 86
Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIH- 126
+ R + + ++ ++ I + + I
Sbjct: 87 PIIGGPSGKLESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISS 146
Query: 127 --FPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVI------------AIKDYTS 172
DV ++G+G S D R V + D
Sbjct: 147 YWDSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNM 206
Query: 173 NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209
+E+ +++ + L A++ G +K + A+ G
Sbjct: 207 SEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHG 243
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha
sandwich, rossmann-like fold, structural genomics,
PSI-2, protein structure initiative; HET: MSE G3H; 1.65A
{Bacillus subtilis} (A:)
Length = 255
Score = 71.7 bits (175), Expect = 8e-14
Identities = 21/209 (10%), Positives = 56/209 (26%), Gaps = 13/209 (6%)
Query: 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTL 68
++ + ++ + G +A++GG T E + D +
Sbjct: 32 SDQSPWVKKEXGRAAVACXKKRF--SGKNIVAVTGGTTIEAVAEXXTP---DSKNRELLF 86
Query: 69 VDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHF- 127
V R E++++ + I + + + + + I + ++++
Sbjct: 87 VPARGGLGEDVKNQANTICAHXAEKASGTYRLLFVPGQLSQGAYSSIIEEPSVKEVLNTI 146
Query: 128 -PFDVVVLGMGIDGHTASFFPKGDTLS------IALDTHTPRSVIAIKDYTSNEQRMTMT 180
+V G+G A A+ A + +
Sbjct: 147 KSASXLVHGIGEAKTXAQRRNTPLEDLKKIDDNDAVTEAFGYYFNADGEVVHKVHSVGXQ 206
Query: 181 FSALHDAQFLALHIEGTQKKHVLEKAISG 209
+ + G+ K +E
Sbjct: 207 LDDIDAIPDIIAVAGGSSKAEAIEAYFKK 235
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich,
center for structural genomics of infectious diseases,
csgid, transcription; HET: MSE; 2.00A {Shigella flexneri
2a str} (A:)
Length = 266
Score = 67.1 bits (163), Expect = 2e-12
Identities = 21/217 (9%), Positives = 59/217 (27%), Gaps = 18/217 (8%)
Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67
E+++ A+ L + + + S G +E L +++
Sbjct: 35 NDEDEETQLAXXGLHGAQLLDRLL--EPGDIVGFSWGRAVSALVENLPQA-GQSRQLICV 91
Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIE-EAIRIANEKICQLIH 126
+ R + + ++ ++ ++ +
Sbjct: 92 PIIGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIXQSQHFKTISA 151
Query: 127 F--PFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVI------------AIKDYTS 172
+ D+ ++G+G D R V A +
Sbjct: 152 YWDNLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAXVETNX 211
Query: 173 NEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209
+E+ +++ + L A++ +K + A+ G
Sbjct: 212 SEKTLSIEXNKLKQARYSIGIAXSEEKYSGIIGALRG 248
>2o0m_A Transcriptional regulator, SORC family; structural genomics,
PSI-2, protein structure initiative; 1.60A {Enterococcus
faecalis V583} (A:)
Length = 345
Score = 66.8 bits (162), Expect = 2e-12
Identities = 24/201 (11%), Positives = 58/201 (28%), Gaps = 7/201 (3%)
Query: 15 LAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFV 74
+ + L++ + N G +IA+ GG T E + + +
Sbjct: 123 VLSDFGDVLTNTLNLLLPN-GENTIAVXGGTTXAXVAENXGSLETEKRHNLFVPARGGIG 181
Query: 75 PLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVL 134
++++N +A ++P ++T ++ + + + + VV
Sbjct: 182 EAVSVQANSISAVXANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVH 241
Query: 135 GMGIDGHTASFFPKGD------TLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSALHDAQ 188
+G H A+ D A+ R+ + L +
Sbjct: 242 SIGRALHXAARRKXSDDEXVXLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIP 301
Query: 189 FLALHIEGTQKKHVLEKAISG 209
++ G K +
Sbjct: 302 YVVAIAGGKTKAKAIRAYXKN 322
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid
recognition, DNA-binding protein, type IIS restriction
endonuclease; 2.30A {Planomicrobium okeanokoites}
(A:292-411)
Length = 120
Score = 28.3 bits (63), Expect = 1.0
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 77 ENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHF 127
E +R+ ++ I + ++ + K I + +E I I LI+
Sbjct: 13 EYVRTRRALILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLINT 63
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas} (A:1-274,A:432-527,A:631-662)
Length = 402
Score = 27.0 bits (58), Expect = 2.0
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 106 PQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASF 145
P K + IA I + D++++G G+ A+F
Sbjct: 3 PSKETPRGVAIAEPII---VEHSVDLLMVGGGMGNCGAAF 39
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 26.7 bits (58), Expect = 2.7
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGL-----TPRFFLEELSIINVDWH 62
+A + ++ K ++ K + TP ++ + +D
Sbjct: 201 LARQIMDVVTEMGKY--TEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDAR 258
Query: 63 KVVVTLVDERF 73
+ V ++DE
Sbjct: 259 DIKVFVLDEAD 269
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high
resolution [NIFE]hydrogenase, oxidoreductase, NI-A
state, unready state; HET: NFC; 1.04A {Desulfovibrio
vulgaris str} (S:1-180)
Length = 180
Score = 26.2 bits (57), Expect = 4.0
Identities = 15/135 (11%), Positives = 38/135 (28%), Gaps = 12/135 (8%)
Query: 38 SIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQK 97
S ++ P L +++D+H+ T++ E + + +
Sbjct: 21 SESVLRAFEPYIDTLILDTLSLDYHE---TIMAAAGDAAEAAL-------EQAVNSPHGF 70
Query: 98 ASFIPLYYPQKTIEEAIRIANEKICQLIH--FPFDVVVLGMGIDGHTASFFPKGDTLSIA 155
+ + P ++AN + + P V+ G + A
Sbjct: 71 IAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGA 130
Query: 156 LDTHTPRSVIAIKDY 170
+ + +K
Sbjct: 131 KGVNDALKHLGVKAI 145
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD;
2.60A {Plasmodium falciparum} (A:1-159,A:272-374)
Length = 262
Score = 25.7 bits (55), Expect = 5.5
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 127 FPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTM 179
+D++V+G G G A+ +AL + + ++ M
Sbjct: 1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFN 53
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.95A {Bacillus subtilis} (A:)
Length = 186
Score = 25.5 bits (55), Expect = 7.1
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 17/122 (13%)
Query: 107 QKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIA 166
+ +++ I + G G G A F H +
Sbjct: 16 HNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSF-------AMRLMHMGFNAHI 68
Query: 167 IKDYTSNEQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQS 226
+ + + L + G+ + L + +L + A+ N +S
Sbjct: 69 VGEIL----------TPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPES 118
Query: 227 PL 228
+
Sbjct: 119 SI 120
>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of
A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase,
redox- active center; HET: FAD NAP; 2.80A {Saccharomyces
cerevisiae} (A:1-126,A:284-326)
Length = 169
Score = 25.3 bits (54), Expect = 7.6
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 129 FDVVVLGMGIDGHTASFF 146
V ++G G HTA+ +
Sbjct: 11 NKVTIIGSGPAAHTAAIY 28
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42
glutamyl aminopeptidase, structural genomics; 2.39A
{Cytophaga hutchinsonii atcc 33406} (A:1-87,A:149-321)
Length = 260
Score = 25.1 bits (54), Expect = 8.0
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFPKGD----TLSIA-LDTHTPRSVIAIKDY 170
++ + PF + V G G + D HTP + KD
Sbjct: 190 IELARQTDIPFQLEVEGAGASDGRELQLSPYPWDWCFIGAPEKDAHTPNECVHKKDI 246
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.134 0.387
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,729,464
Number of extensions: 73531
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 36
Length of query: 234
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 148
Effective length of database: 2,048,819
Effective search space: 303225212
Effective search space used: 303225212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)