RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780505|ref|YP_003064918.1| 6-phosphogluconolactonase
[Candidatus Liberibacter asiaticus str. psy62]
(234 letters)
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga
maritima [TaxId: 2336]}
Length = 218
Score = 116 bits (290), Expect = 2e-27
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 14/228 (6%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKV 64
K + + + +K+ ++ + K + L+GG TP E+L+ W+++
Sbjct: 1 KTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKFPWNRI 60
Query: 65 VVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQL 124
L DER+VPL++ +SN I++ + + IE+A E+ +
Sbjct: 61 HFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACE-KYEREIRS 119
Query: 125 IHFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTFSAL 184
FD+ +LGMG DGH AS F L T T S R+T+TF AL
Sbjct: 120 ATDQFDLAILGMGPDGHVASIFDLETGNKDNLVTFTDPS------GDPKVPRVTLTFRAL 173
Query: 185 HDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAILWNAQSPLEVHW 232
+ + ++ I G +K + L + + +P + + + W
Sbjct: 174 NTSLYVLFLIRGKEKINRLTEILKDTP---LPAYFV----RGKEKTVW 214
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Human (Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 103 bits (257), Expect = 2e-23
Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 14/229 (6%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQLS-IGITNKGTASIALSGGLTPRFFLEEL----SIINV 59
KL + E+ + ++ AK + ++ + ++ L G TP ++L ++
Sbjct: 2 KLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDL 61
Query: 60 DWHKVVVTLVDER-FVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIAN 118
+ V +DE +P ++ S SF+ F ++ + +A A
Sbjct: 62 SFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAF 121
Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFP----KGDTLSIALDTHTPRSVIAIKDYTSNE 174
E+ + ++ V G+G DGH A P T L T + D +
Sbjct: 122 EEKIK-AAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTK 180
Query: 175 ---QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAI 220
+T+ + DA+ + + I G K L KAI + A
Sbjct: 181 VPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAF 229
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 100 bits (250), Expect = 1e-22
Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 14/229 (6%)
Query: 5 KLYVAENKKRLAQKLAKKVAEQL-SIGITNKGTASIALSGGLTPRFFLEELSII----NV 59
+L +++ + A+ + ++ + T + L G TP + L + V
Sbjct: 2 RLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQV 61
Query: 60 DWHKVVVTLVDERFV-PLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIAN 118
+ VV +DE P E+ S SF+ + F + A I L +A
Sbjct: 62 SFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQY 121
Query: 119 EKICQLIHFPFDVVVLGMGIDGHTASFFPKGD----TLSIALDTHTPRSVIAIKDYTSNE 174
E+ + + + + G+G DGH A P T L T + D N+
Sbjct: 122 EEKIR-SYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQ 180
Query: 175 ---QRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISGDDALEMPIRAI 220
+T+ L DA+ + + + G+QK L+ A+ G I +
Sbjct: 181 VPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCL 229
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 40.4 bits (94), Expect = 1e-04
Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 18/216 (8%)
Query: 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTL 68
E+++ + A+ L + + S G +E L + V +
Sbjct: 25 DEDEETQLAMMGLHGAQLLDRLLEPGDI--VGFSWGRAVSALVENLPQAGQSRQLICVPI 82
Query: 69 VDERFVPLENLRSNQSFISKFFLQNKAQ-KASFIPLYYPQKTIEEAIR--IANEKICQLI 125
+ LE+ + + K + + P I I + I
Sbjct: 83 IGGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYW 142
Query: 126 HFPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIA------------IKDYTSN 173
D+ ++G+G D R V + + +
Sbjct: 143 D-NLDIALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMS 201
Query: 174 EQRMTMTFSALHDAQFLALHIEGTQKKHVLEKAISG 209
E+ +++ + L A++ +K + A+ G
Sbjct: 202 EKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRG 237
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR
{Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 38.4 bits (89), Expect = 5e-04
Identities = 14/141 (9%), Positives = 49/141 (34%), Gaps = 7/141 (4%)
Query: 9 AENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTL 68
++ + +++ + + + K +A++GG T E ++ + + + V
Sbjct: 29 SDQSPWVKKEMGRAAVACMKKRFSGKNI--VAVTGGTTIEAVAEMMTPDSKNRELLFVPA 86
Query: 69 VDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHF- 127
E++++ + I + + + + + I + ++++
Sbjct: 87 RG---GLGEDVKNQANTICAHMAEKASGTYRLLFVPGQLSQGAYSSIIEEPSVKEVLNTI 143
Query: 128 -PFDVVVLGMGIDGHTASFFP 147
++V G+G A
Sbjct: 144 KSASMLVHGIGEAKTMAQRRN 164
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 35.0 bits (80), Expect = 0.005
Identities = 16/146 (10%), Positives = 45/146 (30%), Gaps = 10/146 (6%)
Query: 8 VAENKKRLAQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVT 67
+ L++++++ A L I + I S G + ++ + +V
Sbjct: 29 FDDTPTILSERISQVAAGVLRNLIDDNMK--IGFSWGKSLSNLVDLIHSKSVRNVHFYPL 86
Query: 68 LVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEK----ICQ 123
+ + + + + + + +F+ Q+ A I + +
Sbjct: 87 AGG---PSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKN 143
Query: 124 LIHFPFDVVVLGMGIDGHTASFFPKG 149
D+ V+G+G +
Sbjct: 144 SWK-DLDIAVVGIGDFSNKGKHQWLD 168
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 33.4 bits (76), Expect = 0.019
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 11/142 (7%)
Query: 85 FISKFFLQNKAQKASFIPLYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTAS 144
+ K + I + I E++ + P+ + +L G A
Sbjct: 81 GTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAI 140
Query: 145 FFPKGD----TLSIALD-THTPRSVIAIKDYTSNEQRMTMTFSALHDAQFLALHIEGTQK 199
K LS+ H+ V+ +D + + MT +H+ ++
Sbjct: 141 HLTKAGVPTGALSVPARYIHSNTEVVDERDVDATVELMTKALENIHELMVDYELLKKV-- 198
Query: 200 KHVLEKAISGDDALEMPIRAIL 221
V +SG + + IR ++
Sbjct: 199 --VEAPGVSGYE--FLGIRDVV 216
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 27.8 bits (62), Expect = 0.87
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 16 AQKLAKKVAEQLSIGITNKGTASIALSGGLTPRFFLEELSIINVDWHKVVVTLVDERF 73
A A+K+ ++ I +K L G + R + ++ V+ K V L +
Sbjct: 7 ANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVL 64
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 26.9 bits (58), Expect = 1.5
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 103 LYYPQKTIEEAIRIANEKICQLIHFPFDVVVLGMGIDGHTA 143
+YYP+K + A+E +++ D++++G G G A
Sbjct: 1 VYYPKKY---ELYKADEVPTEVVET--DILIIGGGFSGCGA 36
>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Length = 388
Score = 26.2 bits (56), Expect = 2.5
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 102 PLYY-PQKTIEEAIRIAN--------EKICQLIHFPFDVVVLGMGIDGHTASFFPKG 149
LY K +E+ R+A+ EKI Q+ V + D S G
Sbjct: 3 VLYKDATKPVED--RVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGG 57
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 288
Score = 25.8 bits (55), Expect = 3.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 128 PFDVVVLGMGIDGHTAS 144
P D+++ G GI G + +
Sbjct: 1 PIDILIAGAGIGGLSCA 17
>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus
niger [TaxId: 5061]}
Length = 203
Score = 25.9 bits (57), Expect = 3.3
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 149 GDTLSIALDTHTPRS-VIAIKDYTSNEQRMTMTFSA 183
GD++ + ++ + S +++ T+ Q +T TFS
Sbjct: 90 GDSIKVTVEATSKSSGSATVENLTTG-QSVTHTFSG 124
>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816
{Porphyromonas gingivalis [TaxId: 837]}
Length = 149
Score = 25.5 bits (56), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 109 TIEEAIRIANEKICQLIHF-PFDVVV 133
+ EA +A+E + Q +HF +D +V
Sbjct: 53 SHPEAESMASEVLYQGLHFSRYDTLV 78
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 25.3 bits (54), Expect = 5.3
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 129 FDVVVLGMGIDGHTA 143
DV+++G G G +
Sbjct: 8 CDVLIIGSGAAGLSL 22
>d2ifra1 b.29.1.20 (A:1-206) Scytalidopepsin B {Fungus (Scytalidium
lignicola) [TaxId: 5539]}
Length = 206
Score = 25.2 bits (55), Expect = 5.4
Identities = 7/36 (19%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 149 GDTLSIALDTHTPRS-VIAIKDYTSNEQRMTMTFSA 183
GD++ +++ + S +++ T+ Q+++ +FS
Sbjct: 86 GDSIQMSVTATSDTSGSATLENLTTG-QKVSKSFSN 120
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 25.1 bits (53), Expect = 6.0
Identities = 6/55 (10%), Positives = 16/55 (29%)
Query: 127 FPFDVVVLGMGIDGHTASFFPKGDTLSIALDTHTPRSVIAIKDYTSNEQRMTMTF 181
+ FD++++G G G A+ + + + +
Sbjct: 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCI 56
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 24.8 bits (52), Expect = 6.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 129 FDVVVLGMGIDGHTAS 144
+DV+VLG GI S
Sbjct: 6 YDVIVLGTGITECILS 21
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma
genitalium [TaxId: 2097]}
Length = 140
Score = 25.0 bits (54), Expect = 6.3
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 60 DWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKAS 99
+W K++V E + Q ++ +Q K K S
Sbjct: 44 EWQKLIVKAFSENIFSFQKKIEEQQLKNQLEIQTKYNKIS 83
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 24.8 bits (53), Expect = 7.2
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 129 FDVVVLGMGIDGHTA 143
FD VV+G G G A
Sbjct: 8 FDAVVIGAGGAGMRA 22
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
synthase, synthetase domain {Escherichia coli [TaxId:
562]}
Length = 297
Score = 24.8 bits (54), Expect = 7.2
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 46 TPRFFLEELSIINVDWHKVVVTLVDERFVPLENLRSNQSFISKFFLQNKAQKASFIPLY 104
+ E +I W + F P E L + + K NKA L+
Sbjct: 135 SA-SCHTEAGLILERWAEQG--YKGNGFNPAEGLINELAGAWKHSRANKAILPILWSLF 190
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 24.4 bits (51), Expect = 7.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 129 FDVVVLGMGIDGHTASFF 146
+DV+VLG G+ S
Sbjct: 7 YDVIVLGTGLTECILSGI 24
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048,
catalytic domain {Thermotoga maritima [TaxId: 2336]}
Length = 248
Score = 24.5 bits (52), Expect = 8.4
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 126 HFPFDVVVLGMGIDGHTASFFPKG---DTLSIALD-THTPRSVIAIKDY 170
+ V G + G +SI L HTP ++ +D
Sbjct: 185 SLQEEAVGGRSGTETDFVQLVRNGVRTSLISIPLKYMHTPVEMVDPRDV 233
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
flexneri [TaxId: 623]}
Length = 264
Score = 24.5 bits (52), Expect = 8.6
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 132 VVLGMGIDGHTASFFPKG-DTLSIALDT---HTPRSVIAIKDY 170
+ G DG G TL + T H S+ +D
Sbjct: 196 MFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDI 238
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.387
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 857,498
Number of extensions: 38155
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 28
Length of query: 234
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,281,736
Effective search space: 194823872
Effective search space used: 194823872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)