HHsearch alignment for GI: 254780506 and conserved domain: COG0078
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism].
Probab=94.77 E-value=0.15 Score=31.58 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEECC-----CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH--HHCC
Q ss_conf 986789999999999998397000024-----741112266999999852312212588834688711378898--6068
Q gi|254780506|r 42 NDPASCSYVSAKTRMAKHCGFHSVQYN-----FPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSII--QSIV 114 (306)
Q Consensus 42 ddpaS~~Yv~~K~K~a~~lGI~~~~~~-----l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~--~~I~ 114 (306)
T Consensus 52 eK~STRTR~S-Fe~a~~qlGg~~~~l~~~~~Qlgr~---Esi~DTArVLs--r~~D~I~~R~~--~~~~v~~lA~~s~VP 123 (310)
T COG0078 52 EKTSTRTRVS-FEVAATQLGGHAIYLGPGDSQLGRG---ESIKDTARVLS--RMVDAIMIRGF--SHETLEELAKYSGVP 123 (310)
T ss_pred CCCCCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCC---CCHHHHHHHHH--HHHHEEEEECC--CHHHHHHHHHHCCCC
T ss_conf 4898404544-9999997689648708875526789---96788999998--55025778535--489999999727996
Q ss_pred CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC
Q ss_conf 74351321553388873047788756766799-99999986787720012899616442034689999862045331246
Q gi|254780506|r 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS 193 (306)
Q Consensus 115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs 193 (306)
T Consensus 124 ---V-------------iNgLtD~~HP~Q~LADl~Ti~E~~-g-~l~g~k~a~vGDgNNv~~Sl~~~~a~~G~dv~ia~P 185 (310)
T COG0078 124 ---V-------------INGLTDEFHPCQALADLMTIKEHF-G-SLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATP 185 (310)
T ss_pred ---E-------------ECCCCCCCCCHHHHHHHHHHHHHC-C-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf ---6-------------725456668189999999999963-8-666857999767636999999999982986899789
Q ss_pred C-------------------------CCCHHHHHHHCCEEEEEC
Q ss_conf 7-------------------------653477642235736522
Q gi|254780506|r 194 K-------------------------TKNLPEICRTADILVVAV 212 (306)
Q Consensus 194 ~-------------------------T~~l~~~~~~ADivIsAv 212 (306)
T Consensus 186 ~~~~p~~~~~~~a~~~a~~sg~~i~~t~d~~eAv~gADvvyTDv 229 (310)
T COG0078 186 KGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDV 229 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEECC
T ss_conf 86786989999999999853984898639889857899998367