HHsearch alignment for GI: 254780506 and conserved domain: COG0078

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism].
Probab=94.77  E-value=0.15  Score=31.58  Aligned_cols=145  Identities=19%  Similarity=0.268  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEECC-----CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH--HHCC
Q ss_conf             986789999999999998397000024-----741112266999999852312212588834688711378898--6068
Q gi|254780506|r   42 NDPASCSYVSAKTRMAKHCGFHSVQYN-----FPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSII--QSIV  114 (306)
Q Consensus        42 ddpaS~~Yv~~K~K~a~~lGI~~~~~~-----l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~--~~I~  114 (306)
T Consensus        52 eK~STRTR~S-Fe~a~~qlGg~~~~l~~~~~Qlgr~---Esi~DTArVLs--r~~D~I~~R~~--~~~~v~~lA~~s~VP  123 (310)
T COG0078          52 EKTSTRTRVS-FEVAATQLGGHAIYLGPGDSQLGRG---ESIKDTARVLS--RMVDAIMIRGF--SHETLEELAKYSGVP  123 (310)
T ss_pred             CCCCCHHHHH-HHHHHHHCCCCEEEECCCCCCCCCC---CCHHHHHHHHH--HHHHEEEEECC--CHHHHHHHHHHCCCC
T ss_conf             4898404544-9999997689648708875526789---96788999998--55025778535--489999999727996


Q ss_pred             CCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCC
Q ss_conf             74351321553388873047788756766799-99999986787720012899616442034689999862045331246
Q gi|254780506|r  115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHS  193 (306)
Q Consensus       115 p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~atVti~hs  193 (306)
T Consensus       124 ---V-------------iNgLtD~~HP~Q~LADl~Ti~E~~-g-~l~g~k~a~vGDgNNv~~Sl~~~~a~~G~dv~ia~P  185 (310)
T COG0078         124 ---V-------------INGLTDEFHPCQALADLMTIKEHF-G-SLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATP  185 (310)
T ss_pred             ---E-------------ECCCCCCCCCHHHHHHHHHHHHHC-C-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf             ---6-------------725456668189999999999963-8-666857999767636999999999982986899789


Q ss_pred             C-------------------------CCCHHHHHHHCCEEEEEC
Q ss_conf             7-------------------------653477642235736522
Q gi|254780506|r  194 K-------------------------TKNLPEICRTADILVVAV  212 (306)
Q Consensus       194 ~-------------------------T~~l~~~~~~ADivIsAv  212 (306)
T Consensus       186 ~~~~p~~~~~~~a~~~a~~sg~~i~~t~d~~eAv~gADvvyTDv  229 (310)
T COG0078         186 KGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDV  229 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEECC
T ss_conf             86786989999999999853984898639889857899998367