HHsearch alignment for GI: 254780506 and conserved domain: PRK09526

>PRK09526 lacI lac repressor; Reviewed.
Probab=90.53  E-value=1.7  Score=24.37  Aligned_cols=96  Identities=16%  Similarity=0.161  Sum_probs=60.4

Q ss_pred             EEECHHH-HHHHHHHHHHHHHHHHHHHCCCCC------------EEEEEEECC--CHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf             5005389-999999999999999998369997------------599999679--8678999999999999839700002
Q gi|254780506|r    3 SLIDGKV-VASVLTDKIAESVAFLKKETGVQV------------GLAVVLVGN--DPASCSYVSAKTRMAKHCGFHSVQY   67 (306)
Q Consensus         3 ~iLdGk~-iA~~i~~~lk~~i~~l~~~~g~~P------------~LavIlvGd--dpaS~~Yv~~K~K~a~~lGI~~~~~   67 (306)
T Consensus        24 rvLn~~~~vs~~tr~rV~~~a~el----gY~pn~~Ar~l~~~~t~~Igli~~~i~~~~~~~~~~~i~~~~~~~gy~~~l~   99 (342)
T PRK09526         24 RVLNQASHVSAKTREKVEAAMAEL----NYVPNRVAQQLAGKQSLTIGLVTTSLALHAPSQIAAAIKSRADQLGYSVVIS   99 (342)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHH----CCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             997897999999999999999983----9997888887513887279999346665247999999999999869969999


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCH
Q ss_conf             4741112266999999852312212588834688711
Q gi|254780506|r   68 NFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTV  104 (306)
Q Consensus        68 ~l~~~~se~el~~~I~~LN~d~~V~GIlvQlPLP~~i  104 (306)
T Consensus       100 ~~~-~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~~  134 (342)
T PRK09526        100 MVE-RSGVEACQAAVNELLA-QRVSGVIINVPLEDAD  134 (342)
T ss_pred             ECC-CCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHH
T ss_conf             688-9808999999999996-6988899956888448