HHsearch alignment for GI: 254780506 and conserved domain: PRK12562
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional.
Probab=97.34 E-value=0.017 Score=38.14 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=107.9
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHH--HCCC-CCEE----EEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC---
Q ss_conf 05389999999999999999998--3699-9759----999967986789999999999998397000024741112---
Q gi|254780506|r 5 IDGKVVASVLTDKIAESVAFLKK--ETGV-QVGL----AVVLVGNDPASCSYVSAKTRMAKHCGFHSVQYNFPVDIS--- 74 (306)
Q Consensus 5 LdGk~iA~~i~~~lk~~i~~l~~--~~g~-~P~L----avIlvGddpaS~~Yv~~K~K~a~~lGI~~~~~~l~~~~s--- 74 (306)
T Consensus 10 L~i~dls~~ei~~il~~A~~~k~~~~~~~~~~~L~gK~v~~lF-~e~STRTR~S-FE~A~~~LGg~~i~l~~-~~s~~~k 86 (334)
T PRK12562 10 LKLLDFTPAELNSLLQLAAKLKADKKNGKEVARLTGKNIALIF-EKDSTRTRCS-FEVAAYDQGARVTYLGP-SGSQIGH 86 (334)
T ss_pred CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE-CCCCCHHHHH-HHHHHHHCCCCEEEECC-CCCCCCC
T ss_conf 7710069999999999999998666458867678999899996-7897047999-99999985997898587-6452789
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHH
Q ss_conf 266999999852312212588834688711378898606874351321553388873047788756766799-9999998
Q gi|254780506|r 75 QIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAG-AILLIEQ 153 (306)
Q Consensus 75 e~el~~~I~~LN~d~~V~GIlvQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~~~PcTp~a-v~~ll~~ 153 (306)
T Consensus 87 gEsl~Dt~~vLs~~--~D~iv~R~~~~~~~--~~la~~s~----v---PVIN------g-~~~~~HPtQaL~Dl~Ti~E~ 148 (334)
T PRK12562 87 KESIKDTARVLGRM--YDGIQYRGHGQEVV--ETLAEYAG----V---PVWN------G-LTNEFHPTQLLADLLTMQEH 148 (334)
T ss_pred CCCHHHHHHHHHHH--CCEEEECCCCCHHH--HHHHHHCC----C---CEEE------C-CCCCCCCHHHHHHHHHHHHH
T ss_conf 98889999999860--77789735573899--99999759----9---9888------9-98776717999999999998
Q ss_pred HCCCCCCCCEEEEECCC-CCCHHHHHHHHHHHCCCEEECCCCC-------------------------CCHHHHHHHCCE
Q ss_conf 67877200128996164-4203468999986204533124676-------------------------534776422357
Q gi|254780506|r 154 FKGCDLSGQHAVVIGRS-NLFGKPMGQLLLSRNATVTMAHSKT-------------------------KNLPEICRTADI 207 (306)
Q Consensus 154 y~~i~l~Gk~vvVvGrs-~~VG~Pla~lL~~~~atVti~hs~T-------------------------~~l~~~~~~ADi 207 (306)
T Consensus 149 ~~g~~l~~l~i~~vGD~~n~va~S~i~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDv 228 (334)
T PRK12562 149 LPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADF 228 (334)
T ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCE
T ss_conf 46898677189996888663579999999974986999789766888899999999999709928998468887057878
Q ss_pred EEEE
Q ss_conf 3652
Q gi|254780506|r 208 LVVA 211 (306)
Q Consensus 208 vIsA 211 (306)
T Consensus 229 vytd 232 (334)
T PRK12562 229 IYTD 232 (334)
T ss_pred EEEE
T ss_conf 9864