HHsearch alignment for GI: 254780506 and conserved domain: TIGR01316
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=92.03 E-value=0.45 Score=28.32 Aligned_cols=150 Identities=21% Similarity=0.345 Sum_probs=88.0
Q ss_pred HHHHHHHHHHCCCCEEECCC-CCCCCHHHHHHHHHHHCCCCCCCEEEEECC--CCCCHHHHHHHHHCCCCCCHHHCCHHH
Q ss_conf 99999999983970000247-411122669999998523122125888346--887113788986068743513215533
Q gi|254780506|r 50 VSAKTRMAKHCGFHSVQYNF-PVDISQIDLENAVLSLNKDDSIHGILVQLP--LPSTVSEQSIIQSIVPEKDVDGLHVVN 126 (306)
Q Consensus 50 v~~K~K~a~~lGI~~~~~~l-~~~~se~el~~~I~~LN~d~~V~GIlvQlP--LP~~id~~~i~~~I~p~KDVDGl~~~N 126 (306)
T Consensus 195 ~~~E~k~LkklGv~fr~~~lvGkt~TL~eL~~---~YG----fDAVFIgtGAG~pkl~Ni--------pG~~L~gvysA~ 259 (462)
T TIGR01316 195 VETEVKKLKKLGVKFRTDYLVGKTVTLEELLE---KYG----FDAVFIGTGAGLPKLLNI--------PGEELKGVYSAN 259 (462)
T ss_pred HHHHHHHHHHCCEEEEECCEECCCHHHHHHHH---HCC----CCEEEEEECCCCCEECCC--------CCHHHCCHHHHH
T ss_conf 89888876326637994437505112888887---519----707999506898700167--------843434002234
Q ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHH----CCCCC-CCCEEEEECCCCCCHHHHHHHHHHHCCC-EEECCCCCCCH--
Q ss_conf 8887304778875676679999999986----78772-0012899616442034689999862045-33124676534--
Q gi|254780506|r 127 AGKVMIGDFTTGLVPCTPAGAILLIEQF----KGCDL-SGQHAVVIGRSNLFGKPMGQLLLSRNAT-VTMAHSKTKNL-- 198 (306)
Q Consensus 127 ~g~l~~~~~~~~~~PcTp~av~~ll~~y----~~i~l-~Gk~vvVvGrs~~VG~Pla~lL~~~~at-Vti~hs~T~~l-- 198 (306)
T Consensus 260 ----------d-f-----LtR~nLmKAyefp~~dtPv~~gK~vvviGgGnt-AvD~artAlRLGaEqvh~~YRrtRedmt 322 (462)
T TIGR01316 260 ----------D-F-----LTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNT-AVDAARTALRLGAEQVHVVYRRTREDMT 322 (462)
T ss_pred ----------H-H-----HHHHHHHHHHCCCCCCCCEEECCEEEEECCCHH-HHHHHHHHHHCCCCEEEEEEECCCCCCH
T ss_conf ----------6-8-----877777654236678875654476899878536-7877766645284236998854777513
Q ss_pred -----------------------------------------------------------HHHHHHCCEEEEECCC-CCCC
Q ss_conf -----------------------------------------------------------7764223573652244-3212
Q gi|254780506|r 199 -----------------------------------------------------------PEICRTADILVVAVGR-PRMV 218 (306)
Q Consensus 199 -----------------------------------------------------------~~~~~~ADivIsAvG~-p~~i 218 (306)
T Consensus 323 Ar~EEi~ha~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~Npi 402 (462)
T TIGR01316 323 AREEEIKHAEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEANPI 402 (462)
T ss_pred HHHHHHHHHHHCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCCCE
T ss_conf 66999998853892899874216898657651899998853768811457812430499517886265999745898830
Q ss_pred CCCC---CC---CCCEEEE
Q ss_conf 2010---47---6626998
Q gi|254780506|r 219 QVDW---IK---TGSLVID 231 (306)
Q Consensus 219 ~~~~---vk---~gavvID 231 (306)
T Consensus 403 ~~e~~r~lkt~~~GTIvVd 421 (462)
T TIGR01316 403 IAEDSRSLKTSKRGTIVVD 421 (462)
T ss_pred EEECCCEEEECCCCCEEEC
T ss_conf 3306733334588657874