HHsearch alignment for GI: 254780506 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.41 E-value=0.0031 Score=43.34 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEECCCCCC-------------------CHHHHHH
Q ss_conf 7999999998678772001289961644203468999986204-5331246765-------------------3477642
Q gi|254780506|r 144 PAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNA-TVTMAHSKTK-------------------NLPEICR 203 (306)
Q Consensus 144 p~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~~a-tVti~hs~T~-------------------~l~~~~~ 203 (306)
T Consensus 3 ~~Gf~~~l~~~-~~~~~~k~vlIlGaGG-aarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (155)
T cd01065 3 GLGFVRALEEA-GIELKGKKVLILGAGG-AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA 80 (155)
T ss_pred HHHHHHHHHHC-CCCCCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHHHC
T ss_conf 89999999972-9985799999986758-999999999971998228860899999999998501366401045344315
Q ss_pred HCCEEEEECCC------CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEECCCCHHHHHHCCEECCCCCCCCHHHHHHH
Q ss_conf 23573652244------321220104766269983111112676688568417756787314400898698686899999
Q gi|254780506|r 204 TADILVVAVGR------PRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAML 277 (306)
Q Consensus 204 ~ADivIsAvG~------p~~i~~~~vk~gavvIDvGi~~~~~~~~~~~~~~GDvd~~~~~~a~~iTPVPGGVGp~Tva~L 277 (306)
T Consensus 81 ~~dliIN~tp~G~~~~~~~p~~~~~~~~~~~~~D~iY~P~~T------------~ll~~a~~~g~~~i~G------l~Ml 142 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET------------PLLKEARALGAKTIDG------LEML 142 (155)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC------------HHHHHHHHCCCEEECC------HHHH
T ss_conf 688798767787778776767887759986898653178788------------9999999983958773------9999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999986
Q gi|254780506|r 278 MANTVIAAYRSL 289 (306)
Q Consensus 278 ~~N~v~aa~~~~ 289 (306)
T Consensus 143 i~Qa~~~f~iwt 154 (155)
T cd01065 143 VYQAAEAFELWT 154 (155)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999726