HHsearch alignment for GI: 254780506 and conserved domain: cd05312
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.36 E-value=0.47 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=18.9
Q ss_pred CCHHHHHHHC--CEEEEECCCCCCCCCCCCCCC
Q ss_conf 5347764223--573652244321220104766
Q gi|254780506|r 196 KNLPEICRTA--DILVVAVGRPRMVQVDWIKTG 226 (306)
Q Consensus 196 ~~l~~~~~~A--DivIsAvG~p~~i~~~~vk~g 226 (306)
T Consensus 95 ~~L~e~v~~~kp~vlIG~S~~~g~ft~e~v~~M 127 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAM 127 (279)
T ss_pred CCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 999999972489779980689897799999999