HHsearch alignment for GI: 254780506 and conserved domain: pfam03949

Probab=92.87  E-value=0.37  Score=28.90  Aligned_cols=79  Identities=25%  Similarity=0.380  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHH----CC-------CEEECCCC-------------------
Q ss_conf             9999999986787720012899616442034689999862----04-------53312467-------------------
Q gi|254780506|r  145 AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSR----NA-------TVTMAHSK-------------------  194 (306)
Q Consensus       145 ~av~~ll~~y~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~----~a-------tVti~hs~-------------------  194 (306)
T Consensus        10 Agll~alk~-~g~~l~d~riv~~GAGs-Ag~gia~~l~~~~~~~G~~~~eA~~~i~~~D~~Gll~~~r~~l~~~k~~~a~   87 (255)
T pfam03949        10 AGLLNALKI-TGKPLSDQKIVFFGAGA-AGIGIAELLVAAMVREGLSEEEARKNIWMVDRKGLLTEGREDLNPFKKPFAR   87 (255)
T ss_pred             HHHHHHHHH-HCCCHHHCEEEEECCCH-HHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHH
T ss_conf             999999998-29987782899979788-9999999999999876999788736589975977455899885599999975


Q ss_pred             -------CCCHHHHHHHC--CEEEEECCCCCCCCCCCCCC
Q ss_conf             -------65347764223--57365224432122010476
Q gi|254780506|r  195 -------TKNLPEICRTA--DILVVAVGRPRMVQVDWIKT  225 (306)
Q Consensus       195 -------T~~l~~~~~~A--DivIsAvG~p~~i~~~~vk~  225 (306)
T Consensus        88 ~~~~~~~~~~L~e~v~~~kP~vlIG~S~~~g~ft~evv~~  127 (255)
T pfam03949        88 KTNEVKGWGTLAEAVKGAKPDVLIGVSGVPGVFTEEIVRA  127 (255)
T ss_pred             HCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf             3765556699999986268877998168889889999999