RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate
dehydrogenase/cyclohydrolase protein [Candidatus Liberibacter
asiaticus str. psy62]
(306 letters)
>gnl|CDD|30539 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 346 bits (888), Expect = 7e-96
Identities = 146/290 (50%), Positives = 196/290 (67%), Gaps = 9/290 (3%)
Query: 4 LIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFH 63
+IDGK +A + +++ E V LK + G + GLAV+LVG+DPAS YV +K + A+ G
Sbjct: 2 IIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIA 61
Query: 64 SVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGLH 123
S Y+ P DI++ +L + LN D + GILVQLPLP + EQ ++Q+I PEKDVDG H
Sbjct: 62 SELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFH 121
Query: 124 VVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLS 183
N GK+ G G +PCTPAG + L+E++ DL G++ VV+GRSN+ GKP+ LLL+
Sbjct: 122 PYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGI-DLRGKNVVVVGRSNIVGKPLALLLLN 178
Query: 184 RNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQLG 243
NATVT+ HS+TK+L I + ADI+VVAVG+P ++ D +K G++VIDVGINR+N
Sbjct: 179 ANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND---- 234
Query: 244 KTVLVGDVA-DECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMK 292
LVGDV D K AITPVPGGVGPMT+AML+ NT+ AA R G K
Sbjct: 235 -GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRGEK 283
>gnl|CDD|39431 KOG4230, KOG4230, KOG4230, C1-tetrahydrofolate synthase [Coenzyme
transport and metabolism].
Length = 935
Score = 286 bits (734), Expect = 4e-78
Identities = 128/298 (42%), Positives = 186/298 (62%), Gaps = 4/298 (1%)
Query: 1 MGSLIDGKVVASVLTDKIAESVAFLK-KETGVQVGLAVVLVGNDPASCSYVSAKTRMAKH 59
+ ++ GK +A + + +AE + +K + LA++ VGN S YV K + AK
Sbjct: 2 VAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKE 61
Query: 60 CGFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDV 119
G + P I++ +L + +LN+D ++HGI+VQLPLP+ + E ++ ++I PEKDV
Sbjct: 62 IGIDAKHIKLPETITEGELLREIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDPEKDV 121
Query: 120 DGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQ 179
DG +NAG++ G+ +PCTP G + L+++ G ++G++AVV+GRS + G P+
Sbjct: 122 DGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEA-GVFVAGKNAVVLGRSKIVGSPIAA 180
Query: 180 LLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINS 239
LLL NATVT+ HSKT+NL E ADI++VA+G+P V+ DWIK G++VIDVGIN +
Sbjct: 181 LLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVPD 240
Query: 240 P-QLGKTVLVGDVA-DECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPK 295
P + LVGDV + K V ITPVPGGVGPMT+AMLM NTV AA R K
Sbjct: 241 PSKKSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQREESKKK 298
>gnl|CDD|35312 KOG0089, KOG0089, KOG0089, Methylenetetrahydrofolate
dehydrogenase/methylenetetrahydrofolate cyclohydrolase
[Coenzyme transport and metabolism].
Length = 309
Score = 245 bits (626), Expect = 1e-65
Identities = 133/302 (44%), Positives = 178/302 (58%), Gaps = 13/302 (4%)
Query: 3 SLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGF 62
+I GKV A+ + +IA V +K+ G GL LVG DPAS Y + KT+ + G
Sbjct: 9 VVIAGKVAATFIRQEIANEVEGMKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGI 68
Query: 63 HSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVDGL 122
S QY P S+ +LE+A+ N D S+HGILVQLP+P + EQ I+ ++ PEKDVDG
Sbjct: 69 KSFQYELPESESEDELESAIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGF 128
Query: 123 HVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLL 182
H +N G++ + +PCTP G + ++E G + G++AVVIGRS + G P+ LL
Sbjct: 129 HPLNIGRLALDGREPLFLPCTPLGVVEILE-RTGIETYGKNAVVIGRSKIVGMPLALLLH 187
Query: 183 S--------RNATVTMAHSKTKN--LPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDV 232
+ +ATVT+ H T L R ADI++ AVG P ++ D IK G+ VIDV
Sbjct: 188 NDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVIDV 247
Query: 233 GINRINSPQLG-KTVLVGDVA-DECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLG 290
GINR++ P LVGDV +E GAITPVPGGVGPMTIAML+ NT+ AA R
Sbjct: 248 GINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFL 307
Query: 291 MK 292
K
Sbjct: 308 SK 309
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 231 bits (592), Expect = 2e-61
Identities = 99/172 (57%), Positives = 127/172 (73%), Gaps = 6/172 (3%)
Query: 115 PEKDVDGLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFG 174
PEKDVDGLH VN G++ +G G +PCTPAG + L++++ DL+G+ VV+GRSN+ G
Sbjct: 1 PEKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGI-DLAGKKVVVVGRSNIVG 57
Query: 175 KPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGI 234
KP+ LLL+RNATVT+ HSKTKNL E + ADI++VAVG+P +V+ D +K G++VIDVGI
Sbjct: 58 KPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGI 117
Query: 235 NRINSPQLGKTVLVGDVA-DECKSVVGAITPVPGGVGPMTIAMLMANTVIAA 285
NR+ P LVGDV + K AITPVPGGVGPMT+AMLM NTV AA
Sbjct: 118 NRV--PDKSGGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAA 167
>gnl|CDD|145831 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 159
Score = 230 bits (589), Expect = 4e-61
Identities = 94/166 (56%), Positives = 125/166 (75%), Gaps = 9/166 (5%)
Query: 123 HVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLL 182
H +N G++++G G VPCTP G + L++++ G DL+G++ VVIGRSN+ GKP+ LLL
Sbjct: 1 HPINLGRLVLG--EPGFVPCTPRGIMELLKRY-GIDLAGKNVVVIGRSNIVGKPLALLLL 57
Query: 183 SRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQL 242
+ NATVT+ HSKTK+L EI R ADI+VVAVG+P +++ DW+K G++VIDVGINR+ +
Sbjct: 58 NANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVEN--- 114
Query: 243 GKTVLVGDVA-DECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYR 287
GK LVGDV + K AITPVPGGVGPMT+AML+ NTV AA R
Sbjct: 115 GK--LVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKR 158
>gnl|CDD|144385 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 149 bits (378), Expect = 1e-36
Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 4 LIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHCGFH 63
++DGK +A + +++ E VA LK E GV LAV+LVG+DPAS YV +K + A+ G
Sbjct: 2 ILDGKALAKKIREELKEEVAKLK-EKGVTPKLAVILVGDDPASQVYVRSKRKAAEELGIE 60
Query: 64 SVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD 120
S P DI++ +L + LN D S+HGILVQLPLP + E+ I+ +I PEKDVD
Sbjct: 61 SELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPKHIDEEKILNAIDPEKDVD 117
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 105 bits (263), Expect = 2e-23
Identities = 51/148 (34%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 141 PCTP------AGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSK 194
PCTP A A+ + +G L G+ +V+GRS + G P+ LL ATV K
Sbjct: 2 PCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK 61
Query: 195 TKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSPQLGKTVLVGDVADE 254
T L AD++VV +P V +WIK G+ VI+ + L GD E
Sbjct: 62 TIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPTK----------LSGDDVKE 111
Query: 255 CKSVVGAITPVPGGVGPMTIAMLMANTV 282
S+ P+ GGVG +T+AM M N V
Sbjct: 112 SASL---YVPMTGGVGKLTVAMRMQNMV 136
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 49.7 bits (119), Expect = 9e-07
Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 55/206 (26%)
Query: 115 PEKDVDGLHVVNAGKV------MIGDFT-TGLVPCTPAGAILLIEQFK--------GCDL 159
P KDV+GL + + + ++PCTP + ++E G L
Sbjct: 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60
Query: 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATV---------------------TMAHSKTKNL 198
G+ +I RS + G+P+ LL + A V +
Sbjct: 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120
Query: 199 PEICRTADILVVAVGRPRM-VQVDWIKTGSLVIDV-GINRINSPQLGKTVLVGDVADECK 256
+ +D+++ V P V + +K G++ I+ I + K
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK--------------NFEPSVK 166
Query: 257 SVVGAITPVPGGVGPMTIAMLMANTV 282
P +G +TIAML+ N +
Sbjct: 167 EKASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|146629 pfam04096, Nucleoporin2, Nucleoporin autopeptidase.
Length = 137
Score = 30.7 bits (70), Expect = 0.54
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 61 GFHSVQYNFPVDISQIDLENAV 82
G+ S+++ PVD+S IDL+ V
Sbjct: 31 GYGSIEFLGPVDLSGIDLDKIV 52
>gnl|CDD|147219 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 30.3 bits (69), Expect = 0.76
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 80 NAVLSLNKDDSIHGILVQLPLPSTV 104
N +LSL + + G+L+QLP P+T
Sbjct: 43 NQLLSLPTESTTDGVLLQLPEPTTP 67
>gnl|CDD|145097 pfam01762, Galactosyl_T, Galactosyltransferase. This family
includes the galactosyltransferases
UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-
galactosyltransferase and UDP-Gal:beta-GlcNAc beta
1,3-galactosyltranferase. Specific
galactosyltransferases transfer galactose to GlcNAc
terminal chains in the synthesis of the lacto-series
oligosaccharides types 1 and 2.
Length = 196
Score = 30.0 bits (68), Expect = 0.86
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 207 ILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSP 240
+L + R + D TG L D+GI+R++ P
Sbjct: 163 LLKASKHRRFLQIEDVYVTGILADDLGISRVDLP 196
>gnl|CDD|38583 KOG3373, KOG3373, KOG3373, Glycine cleavage system H protein
(lipoate-binding) [Amino acid transport and metabolism].
Length = 172
Score = 29.6 bits (66), Expect = 1.2
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 219 QVDWIKTGSLVIDVGINRINSPQLGKTVLV-----------GDVADECKSVVGA---ITP 264
Q +W+ V VGI LG V V GD +SV A +P
Sbjct: 56 QHEWVLVEGGVGTVGITDFAQEHLGDVVYVELPEVGTEVSKGDSFGAVESVKAASEIYSP 115
Query: 265 VPGGV 269
V G V
Sbjct: 116 VSGEV 120
>gnl|CDD|36410 KOG1196, KOG1196, KOG1196, Predicted NAD-dependent oxidoreductase
[General function prediction only].
Length = 343
Score = 27.9 bits (62), Expect = 4.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 232 VGINRINSPQLGKTVLVGDVADECKSVVGAITPVPG 267
G I SP+ G+TV V + +VG + G
Sbjct: 143 AGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMG 178
>gnl|CDD|36422 KOG1208, KOG1208, KOG1208, Dehydrogenases with different
specificities (related to short-chain alcohol
dehydrogenases) [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 314
Score = 27.2 bits (60), Expect = 5.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 154 FKGCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMA 191
G DLSG+ A+V G ++ G + L R A V +A
Sbjct: 28 THGIDLSGKVALVTGATSGIGFETARELALRGAHVVLA 65
>gnl|CDD|35944 KOG0725, KOG0725, KOG0725, Reductases with broad range of substrate
specificities [General function prediction only].
Length = 270
Score = 26.9 bits (59), Expect = 7.1
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 156 GCDLSGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVVAVGRP 215
G L+G+ A+V G S+ GK + LL A V + + L E + L G+
Sbjct: 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKV 62
Query: 216 RMVQVD 221
+ D
Sbjct: 63 LAIVCD 68
>gnl|CDD|164595 MTH00022, CYTB, cytochrome b; Validated.
Length = 379
Score = 27.0 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 75 QIDLENAVLSLNKDDSIHGILVQLPLPSTVS 105
+ EN +LS+ ++G LV LP PS +S
Sbjct: 2 PLRKENPLLSI-----VNGFLVDLPSPSNIS 27
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,392,281
Number of extensions: 174422
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 21
Length of query: 306
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,254,100
Effective search space: 906123300
Effective search space used: 906123300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)