BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein [Candidatus Liberibacter asiaticus str. psy62] (306 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 306 Score = 618 bits (1593), Expect = e-179, Method: Compositional matrix adjust. Identities = 306/306 (100%), Positives = 306/306 (100%) Query: 1 MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHC 60 MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHC Sbjct: 1 MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHC 60 Query: 61 GFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD 120 GFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD Sbjct: 61 GFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD 120 Query: 121 GLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQL 180 GLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQL Sbjct: 121 GLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQL 180 Query: 181 LLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSP 240 LLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSP Sbjct: 181 LLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSP 240 Query: 241 QLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQS 300 QLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQS Sbjct: 241 QLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQS 300 Query: 301 IAKKTI 306 IAKKTI Sbjct: 301 IAKKTI 306 >gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%) Query: 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVV 210 +GQH + S + G+ +G +LSR S K L TA LV+ Sbjct: 274 AGQHTAIYWGSAMIGRFIGTWILSR-------FSAEKTLCAFATTACSLVI 317 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 24.3 bits (51), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 240 PQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQ 299 P +GK+ L+ + + + G+ + + ++I+ N I + + GM+ P + Sbjct: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRD--SVSISWNWKNHPIEIFDTAGMRKPSRITE 269 Query: 300 SIAKKTI 306 S+ +KT+ Sbjct: 270 SLEQKTV 276 >gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 494 Score = 24.3 bits (51), Expect = 3.1, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 199 PEICRTADILVVAVGRPRMVQVDWIKTG 226 P C ++V +G PR W+K G Sbjct: 63 PVDCVWDRLVVAGIGDPRDANFSWLKAG 90 >gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 23.9 bits (50), Expect = 3.5, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 196 KNLPEICRTADILVVAVGRP 215 +NL EIC T+DI +V P Sbjct: 882 ENLAEICITSDITIVHSNGP 901 >gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 23.1 bits (48), Expect = 5.8, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 17/29 (58%) Query: 124 VVNAGKVMIGDFTTGLVPCTPAGAILLIE 152 ++ A +G + + + C+P G I++IE Sbjct: 227 LLGATSSFLGSYISYFLDCSPGGIIVIIE 255 >gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust. Identities = 10/14 (71%), Positives = 10/14 (71%) Query: 123 HVVNAGKVMIGDFT 136 H V AGK IGDFT Sbjct: 49 HCVVAGKTKIGDFT 62 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180,155 Number of Sequences: 1233 Number of extensions: 7337 Number of successful extensions: 20 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 7 length of query: 306 length of database: 328,796 effective HSP length: 74 effective length of query: 232 effective length of database: 237,554 effective search space: 55112528 effective search space used: 55112528 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)