BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate
dehydrogenase/cyclohydrolase protein [Candidatus Liberibacter
asiaticus str. psy62]
         (306 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780506|ref|YP_003064919.1| methylenetetrahydrofolate dehydrogenase/cyclohydrolase protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 306

 Score =  618 bits (1593), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 306/306 (100%), Positives = 306/306 (100%)

Query: 1   MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHC 60
           MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHC
Sbjct: 1   MGSLIDGKVVASVLTDKIAESVAFLKKETGVQVGLAVVLVGNDPASCSYVSAKTRMAKHC 60

Query: 61  GFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD 120
           GFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD
Sbjct: 61  GFHSVQYNFPVDISQIDLENAVLSLNKDDSIHGILVQLPLPSTVSEQSIIQSIVPEKDVD 120

Query: 121 GLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQL 180
           GLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQL
Sbjct: 121 GLHVVNAGKVMIGDFTTGLVPCTPAGAILLIEQFKGCDLSGQHAVVIGRSNLFGKPMGQL 180

Query: 181 LLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSP 240
           LLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSP
Sbjct: 181 LLSRNATVTMAHSKTKNLPEICRTADILVVAVGRPRMVQVDWIKTGSLVIDVGINRINSP 240

Query: 241 QLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQS 300
           QLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQS
Sbjct: 241 QLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQS 300

Query: 301 IAKKTI 306
           IAKKTI
Sbjct: 301 IAKKTI 306


>gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 420

 Score = 25.4 bits (54), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 160 SGQHAVVIGRSNLFGKPMGQLLLSRNATVTMAHSKTKNLPEICRTADILVV 210
           +GQH  +   S + G+ +G  +LSR        S  K L     TA  LV+
Sbjct: 274 AGQHTAIYWGSAMIGRFIGTWILSR-------FSAEKTLCAFATTACSLVI 317


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 24.3 bits (51), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 240 PQLGKTVLVGDVADECKSVVGAITPVPGGVGPMTIAMLMANTVIAAYRSLGMKSPKFDAQ 299
           P +GK+ L+  +    + + G+ + +      ++I+    N  I  + + GM+ P    +
Sbjct: 212 PNVGKSTLINRLLGYNRLLTGSQSGITRD--SVSISWNWKNHPIEIFDTAGMRKPSRITE 269

Query: 300 SIAKKTI 306
           S+ +KT+
Sbjct: 270 SLEQKTV 276


>gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 494

 Score = 24.3 bits (51), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 199 PEICRTADILVVAVGRPRMVQVDWIKTG 226
           P  C    ++V  +G PR     W+K G
Sbjct: 63  PVDCVWDRLVVAGIGDPRDANFSWLKAG 90


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 23.9 bits (50), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 196 KNLPEICRTADILVVAVGRP 215
           +NL EIC T+DI +V    P
Sbjct: 882 ENLAEICITSDITIVHSNGP 901


>gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 273

 Score = 23.1 bits (48), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 124 VVNAGKVMIGDFTTGLVPCTPAGAILLIE 152
           ++ A    +G + +  + C+P G I++IE
Sbjct: 227 LLGATSSFLGSYISYFLDCSPGGIIVIIE 255


>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score = 22.7 bits (47), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 123 HVVNAGKVMIGDFT 136
           H V AGK  IGDFT
Sbjct: 49  HCVVAGKTKIGDFT 62


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,155
Number of Sequences: 1233
Number of extensions: 7337
Number of successful extensions: 20
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 306
length of database: 328,796
effective HSP length: 74
effective length of query: 232
effective length of database: 237,554
effective search space: 55112528
effective search space used: 55112528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)