HHsearch alignment for GI: 254780507 and conserved domain: COG1580
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion].
Probab=99.74 E-value=1.2e-16 Score=116.21 Aligned_cols=134 Identities=15% Similarity=0.188 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEECHHHHHHHH-
Q ss_conf 9999999999999999999740235444445563456775411158507876406862369999999982757997644-
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYL- 82 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl~~i~VPvI~dg~v~~yv~~~l~~eV~~~~~~~~~- 82 (176)
T Consensus 21 ~liv~ivl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-Nl~~~~~~~~v~i~i~l~~~n~~~~~el~ 99 (159)
T COG1580 21 LLIVLIVLLALAGAGYFFWFGSKSEDAEAESAQTPVEILAYYYLLEEFTT-NLLDGPKDRYVKIAITLEVANKALLEELE 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCEEE-ECCCCCCCEEEEEEEEEEECCHHHHHHHH
T ss_conf 79999999999988888753035654555666788875544652255045-62668874799999988608888999999
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEEEECC
Q ss_conf --3999999999984582345303013698999999999999995867-145523201113
Q gi|254780507|r 83 --KEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQ-FISEVLIDELNY 140 (176)
Q Consensus 83 --~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~-~V~DVLi~~f~y 140 (176)
T Consensus 100 ~~~p~vrd~li~lfsskt~~eL~t~~G--ke~Lk~ei~~~in~~L~~g~~V~dV~fT~fii 158 (159)
T COG1580 100 EKKPEVRDALLMLFSSKTAAELSTPEG--KEKLKAEIKDRINTILKEGQVVKDVLFTNFII 158 (159)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCHH--HHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHC
T ss_conf 756899999999997178988368221--89999999999989984587267785551311