HHsearch alignment for GI: 254780507 and conserved domain: PRK05696
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=99.81 E-value=1.7e-18 Score=126.79 Aligned_cols=133 Identities=12% Similarity=0.176 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCCCCCCCCCCCC-CCEEEEEECCCCEEEEEEEEEEEEECHHH
Q ss_conf 999999999999999999974023544444-----556345677541115-85078764068623699999999827579
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVEN-----HVPPLAIKNTNIIKS-ELVSIPSVSNGVLQAYFLVKLSFIVNDSQ 77 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~-----~~~~~~~~~~eyVkl-~~i~VPvI~dg~v~~yv~~~l~~eV~~~~ 77 (176)
T Consensus 21 ii~~~vlll~ggggg~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~F~V-NL~~~~~~ryLqv~i~L~~~d~~ 99 (168)
T PRK05696 21 IIVVGVLLALGGGGAAWFFMGSSDPAEAAAAEAAAAAAAAPVPPALYVPMPRPFVF-NVPGNGRDRLVQIKVQLMVRGSA 99 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCCCCCCEEEEEEEEEEECCHH
T ss_conf 79999999999999999995588754444444455667788777521357866388-61689974699999999988876
Q ss_pred HHHH---HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH----CCCCEEEEEEEEEC
Q ss_conf 9764---43999999999984582345303013698999999999999995----86714552320111
Q gi|254780507|r 78 ERSY---LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRL----GSQFISEVLIDELN 139 (176)
Q Consensus 78 ~~~~---~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~l----G~~~V~DVLi~~f~ 139 (176)
T Consensus 100 ~~~~i~~~~P~IR~~ll~lls~~~~~~l~t~eGk--~~Lr~e~~~~in~~l~~~~g~~~V~~VlFT~FV 166 (168)
T PRK05696 100 DEELAKKHIPLIENALLMTFSGADVDQLSTPAGK--EELRQKALASVQETLQKVTGKPVVEKVLFTGFV 166 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHH--HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCE
T ss_conf 8999987558899999999962899896098789--999999999999997631388751278530236