HHsearch alignment for GI: 254780507 and conserved domain: PRK12785
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=99.88 E-value=4.5e-22 Score=147.45 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCEEEEEEEEEEEEECHHHHHHH-
Q ss_conf 9999999999999999999740235444445563456775411158507876406-86236999999998275799764-
Q gi|254780507|r 4 FLFSGIWISVVTLISFYMLFLRSMDTMVENHVPPLAIKNTNIIKSELVSIPSVSN-GVLQAYFLVKLSFIVNDSQERSY- 81 (176)
Q Consensus 4 lii~gvwi~~Vtlga~Yf~~~~~~~~~~~~~~~~~~~~~~eyVkl~~i~VPvI~d-g~v~~yv~~~l~~eV~~~~~~~~- 81 (176)
T Consensus 28 Iii~~~vlll~gggg~~f~~~~~~~~~~~~~~~~~~~~~~~f~~l~~fvVNL~~~~g~r~ryLk~~i~Lev~~~~~~~~~ 107 (167)
T PRK12785 28 IIAAAAVLLLGGGGGGWFFFFRGHGADEHHAEAAPKVKPPVFVDVPDMLVNLAGDPGERVQYLKVKVVLEVKDEKQVEQI 107 (167)
T ss_pred EEHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHH
T ss_conf 61999999997311401466426887655556677789863761488599878999985359999999998888789999
Q ss_pred --HHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf --4399999999998458234530301369899999999999999586714552320111
Q gi|254780507|r 82 --LKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELN 139 (176)
Q Consensus 82 --~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~ 139 (176)
T Consensus 108 ~~~~P~IrD~i~~~L~~~~~~dL~~~~G--k~~Lr~ell~rin~~l~~~~V~~VlFtefV 165 (167)
T PRK12785 108 KPLMPRVTDLFQTYLRELRSSDLNGSAG--LFRLKEELTRRVNVALAPAQVNAVLFKEVV 165 (167)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHCHHH--HHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 8753679999999997189989709377--999999999999854178823599898638