Query gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 109 out of 111
Neff 6.2
Searched_HMMs 33803
Date Wed Jun 1 17:23:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780507.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1win_A Flotillin 2; BAND 7 do 86.8 2.2 6.5E-05 22.1 11.2 105 39-149 3-131 (143)
2 >1o4s_A Aspartate aminotransfe 32.8 34 0.001 15.2 3.8 45 84-133 5-51 (62)
3 >2rpb_A Hypothetical membrane 31.8 36 0.0011 15.1 9.0 82 55-140 19-110 (113)
4 >1a31_A Protein (topoisomerase 22.1 12 0.00035 17.9 -1.3 14 135-148 27-40 (65)
5 >1use_A VAsp, vasodilator-stim 21.3 51 0.0015 14.2 1.8 21 106-126 5-25 (45)
6 >1yiz_A Kynurenine aminotransf 19.4 62 0.0018 13.7 5.7 47 84-130 5-51 (76)
7 >2b9s_A Topoisomerase I-like p 17.4 17 0.00051 16.9 -1.3 11 137-147 25-35 (66)
8 >1h2i_A RAD52, DNA repair prot 15.1 56 0.0017 14.0 0.8 21 111-131 33-53 (67)
9 >1a9x_A Carbamoyl phosphate sy 13.1 90 0.0027 12.8 1.8 26 114-139 43-68 (69)
10 >2e84_A High-molecular-weight 13.1 91 0.0027 12.8 1.6 13 45-57 54-66 (91)
No 1
>>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} (A:)
Probab=86.77 E-value=2.2 Score=22.08 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCE-----EEEEECCCCEEEEEEEEEEEEECHHH-----------------HHHHHHHHHHHHHHHHHHC
Q ss_conf 5677541115850-----78764068623699999999827579-----------------9764439999999999845
Q gi|254780507|r 39 AIKNTNIIKSELV-----SIPSVSNGVLQAYFLVKLSFIVNDSQ-----------------ERSYLKEIATDYLYTLLSG 96 (176)
Q Consensus 39 ~~~~~eyVkl~~i-----~VPvI~dg~v~~yv~~~l~~eV~~~~-----------------~~~~~~p~i~D~~~~~L~~ 96 (176)
|.....++++... ..++...++..=.+-+.+.|-+++.+ ....+.+.+.+.+-..+..
T Consensus 3 P~~~v~~~~~r~~~~~~~~~~v~T~D~~~i~v~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88741586516787448871678789988999999999984808999887764324658899999999999999998621
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEEEEEECCCCHHHHHHH
Q ss_conf 823453030136989999999999999958671--45523201113699999742
Q gi|254780507|r 97 PPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQF--ISEVLIDELNYLSIVDMRSN 149 (176)
Q Consensus 97 ~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~--V~DVLi~~f~y~~k~~ir~~ 149 (176)
.+..|+-. +-..+.+++++.+++.+..-. |.+|.|++++|= ++++..
T Consensus 83 ~~~~~~~~----~r~~i~~~v~~~l~~~l~~~Gi~i~~v~i~~i~~p--~e~~~a 131 (143)
T 1win_A 83 LTVEQIYQ----DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDK--VDYLSS 131 (143)
T ss_dssp SCHHHHHH----THHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECT--TCHHHH
T ss_pred CCHHHHHH----CHHHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCC--HHHHHH
T ss_conf 66677760----89999999999999999650058889999963884--999999
No 2
>>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: PLP; 1.90A {Thermotoga maritima} (A:53-99,A:279-293)
Probab=32.77 E-value=34 Score=15.20 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCC--HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999999999984582--34530301369899999999999999586714552
Q gi|254780507|r 84 EIATDYLYTLLSGPP--MGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEV 133 (176)
Q Consensus 84 p~i~D~~~~~L~~~~--~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DV 133 (176)
+.|.|++...+.... +.. ...++.||+.|-+...++.|-++|.-|
T Consensus 5 ~~I~eAa~~Ai~~g~t~Yt~-----~~GipeLReAIa~~~~r~ygveI~~~~ 51 (62)
T 1o4s_A 5 EPVVEEAVRFLQKGEVKYTD-----PRGIYELREGIAKRIGERYKKDIINTV 51 (62)
T ss_dssp HHHHHHHHHHHTTCCCCCCC-----TTCCHHHHHHHHHHHHHHHTCCCCCHH
T ss_pred HHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999998558868899-----847799999999999998489993389
No 3
>>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} (A:)
Probab=31.81 E-value=36 Score=15.11 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=61.5
Q ss_pred EECCCCEEEEEEEEEEEEECHHH--------HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 64068623699999999827579--------9764439999999999845823453030136989999999999999958
Q gi|254780507|r 55 SVSNGVLQAYFLVKLSFIVNDSQ--------ERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLG 126 (176)
Q Consensus 55 vI~dg~v~~yv~~~l~~eV~~~~--------~~~~~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG 126 (176)
+...+++.=.+-+.+.|-+.+.. ..+.+.+.+.+++-..+...+..++-.- -..+.++|++.+|+.+.
T Consensus 19 v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~alr~~~~~~~~~el~~~----R~~i~~~i~~~l~~~l~ 94 (113)
T 2rpb_A 19 VICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSG----RDIINARLREELDKITD 94 (113)
T ss_dssp EECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHC----HHHHHHHHHHHHHHHHG
T ss_pred EECCCCCEEEEEEEEEEEECCHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf 68389999999899999988768872127999999999999999999865539999825----99999999998987760
Q ss_pred CC--CEEEEEEEEECC
Q ss_conf 67--145523201113
Q gi|254780507|r 127 SQ--FISEVLIDELNY 140 (176)
Q Consensus 127 ~~--~V~DVLi~~f~y 140 (176)
.= .|.+|.|++++|
T Consensus 95 ~~Gi~i~~v~I~~i~~ 110 (113)
T 2rpb_A 95 RWGVKITRVEIQRIDP 110 (113)
T ss_dssp GGTEECCCEEECCCBC
T ss_pred CCCEEEEEEEEEEEEC
T ss_conf 2698999999985219
No 4
>>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, topoisomerase I; HET: DNA 5IU PTR; 2.10A {Homo sapiens} (A:324-388)
Probab=22.15 E-value=12 Score=17.87 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=10.4
Q ss_pred EEEECCCCHHHHHH
Q ss_conf 20111369999974
Q gi|254780507|r 135 IDELNYLSIVDMRS 148 (176)
Q Consensus 135 i~~f~y~~k~~ir~ 148 (176)
+=+|+|+.|+.||-
T Consensus 27 ~v~fDFLGKDSiRy 40 (65)
T 1a31_A 27 VVEFDFLGKDSIRY 40 (65)
T ss_dssp EEEEEEECGGGCEE
T ss_pred EEEEEEEECCCEEE
T ss_conf 58998861354277
No 5
>>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} (A:)
Probab=21.30 E-value=51 Score=14.19 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHC
Q ss_conf 136989999999999999958
Q gi|254780507|r 106 KAFGFDNLRKKIKEDLNSRLG 126 (176)
Q Consensus 106 ~~~~l~~lk~~I~~~vN~~lG 126 (176)
+..|++.+|++|.+.+.+.|.
T Consensus 5 ~~~dle~lKqeIL~EvRkElq 25 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKELQ 25 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 022288999999999999999
No 6
>>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} (A:49-98,A:288-313)
Probab=19.39 E-value=62 Score=13.72 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999999998458234530301369899999999999999586714
Q gi|254780507|r 84 EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFI 130 (176)
Q Consensus 84 p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V 130 (176)
+.|+|++...+......--.=.-...++.||+.|-+...++.|-++-
T Consensus 5 ~~I~eAa~eAl~~gdp~~h~Ytp~~G~PeLReAIA~~y~r~yGv~v~ 51 (76)
T 1yiz_A 5 KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIC 51 (76)
T ss_dssp HHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999998389966768999978999999999988998499885
No 7
>>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} (A:298-363)
Probab=17.41 E-value=17 Score=16.92 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=4.7
Q ss_pred EECCCCHHHHH
Q ss_conf 11136999997
Q gi|254780507|r 137 ELNYLSIVDMR 147 (176)
Q Consensus 137 ~f~y~~k~~ir 147 (176)
.|+|++|+.||
T Consensus 25 ~fDFLGKDSiR 35 (66)
T 2b9s_A 25 RFDFLGKDSIR 35 (66)
T ss_dssp EEEEECGGGCE
T ss_pred EEEECCCCCCE
T ss_conf 99976876707
No 8
>>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} (A:1-67)
Probab=15.08 E-value=56 Score=13.98 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999999999995867145
Q gi|254780507|r 111 DNLRKKIKEDLNSRLGSQFIS 131 (176)
Q Consensus 111 ~~lk~~I~~~vN~~lG~~~V~ 131 (176)
..=.+.|..++|++||.+.|.
T Consensus 33 ~~E~~~iq~~L~k~LGPEyIS 53 (67)
T 1h2i_A 33 AEEYQAIQKALRQRLGPEYIS 53 (67)
T ss_dssp HHHHHHHHHHHHCCBCTTTEE
T ss_pred HHHHHHHHHHHHCCCCCHHHE
T ss_conf 888899999996424711320
No 9
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:143-211)
Probab=13.14 E-value=90 Score=12.79 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 99999999999586714552320111
Q gi|254780507|r 114 RKKIKEDLNSRLGSQFISEVLIDELN 139 (176)
Q Consensus 114 k~~I~~~vN~~lG~~~V~DVLi~~f~ 139 (176)
.+++.+..++.+....-..||+|+|-
T Consensus 43 ~~el~~a~~~~~~~~~~~~vlvE~fi 68 (69)
T 1a9x_A 43 REEFEEICARGLDLSPTKELLIDESL 68 (69)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99999999999985899968999741
No 10
>>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str} (A:1-91)
Probab=13.05 E-value=91 Score=12.78 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=5.8
Q ss_pred CCCCCCEEEEEEC
Q ss_conf 1115850787640
Q gi|254780507|r 45 IIKSELVSIPSVS 57 (176)
Q Consensus 45 yVkl~~i~VPvI~ 57 (176)
|-+++...|+...
T Consensus 54 fg~Le~P~V~F~H 66 (91)
T 2e84_A 54 FGNLELPKVTFPH 66 (91)
T ss_dssp GSCCSSCCEEEEH
T ss_pred CCCCCCCCCCCCH
T ss_conf 5875789822467
Done!