Query gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 176 No_of_seqs 109 out of 111 Neff 6.2 Searched_HMMs 33803 Date Wed Jun 1 17:23:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780507.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1win_A Flotillin 2; BAND 7 do 86.8 2.2 6.5E-05 22.1 11.2 105 39-149 3-131 (143) 2 >1o4s_A Aspartate aminotransfe 32.8 34 0.001 15.2 3.8 45 84-133 5-51 (62) 3 >2rpb_A Hypothetical membrane 31.8 36 0.0011 15.1 9.0 82 55-140 19-110 (113) 4 >1a31_A Protein (topoisomerase 22.1 12 0.00035 17.9 -1.3 14 135-148 27-40 (65) 5 >1use_A VAsp, vasodilator-stim 21.3 51 0.0015 14.2 1.8 21 106-126 5-25 (45) 6 >1yiz_A Kynurenine aminotransf 19.4 62 0.0018 13.7 5.7 47 84-130 5-51 (76) 7 >2b9s_A Topoisomerase I-like p 17.4 17 0.00051 16.9 -1.3 11 137-147 25-35 (66) 8 >1h2i_A RAD52, DNA repair prot 15.1 56 0.0017 14.0 0.8 21 111-131 33-53 (67) 9 >1a9x_A Carbamoyl phosphate sy 13.1 90 0.0027 12.8 1.8 26 114-139 43-68 (69) 10 >2e84_A High-molecular-weight 13.1 91 0.0027 12.8 1.6 13 45-57 54-66 (91) No 1 >>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} (A:) Probab=86.77 E-value=2.2 Score=22.08 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=71.4 Q ss_pred CCCCCCCCCCCCE-----EEEEECCCCEEEEEEEEEEEEECHHH-----------------HHHHHHHHHHHHHHHHHHC Q ss_conf 5677541115850-----78764068623699999999827579-----------------9764439999999999845 Q gi|254780507|r 39 AIKNTNIIKSELV-----SIPSVSNGVLQAYFLVKLSFIVNDSQ-----------------ERSYLKEIATDYLYTLLSG 96 (176) Q Consensus 39 ~~~~~eyVkl~~i-----~VPvI~dg~v~~yv~~~l~~eV~~~~-----------------~~~~~~p~i~D~~~~~L~~ 96 (176) |.....++++... ..++...++..=.+-+.+.|-+++.+ ....+.+.+.+.+-..+.. T Consensus 3 P~~~v~~~~~r~~~~~~~~~~v~T~D~~~i~v~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~ 82 (143) T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143) T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 88741586516787448871678789988999999999984808999887764324658899999999999999998621 Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEEEEEECCCCHHHHHHH Q ss_conf 823453030136989999999999999958671--45523201113699999742 Q gi|254780507|r 97 PPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQF--ISEVLIDELNYLSIVDMRSN 149 (176) Q Consensus 97 ~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~--V~DVLi~~f~y~~k~~ir~~ 149 (176) .+..|+-. +-..+.+++++.+++.+..-. |.+|.|++++|= ++++.. T Consensus 83 ~~~~~~~~----~r~~i~~~v~~~l~~~l~~~Gi~i~~v~i~~i~~p--~e~~~a 131 (143) T 1win_A 83 LTVEQIYQ----DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDK--VDYLSS 131 (143) T ss_dssp SCHHHHHH----THHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECT--TCHHHH T ss_pred CCHHHHHH----CHHHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCC--HHHHHH T ss_conf 66677760----89999999999999999650058889999963884--999999 No 2 >>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: PLP; 1.90A {Thermotoga maritima} (A:53-99,A:279-293) Probab=32.77 E-value=34 Score=15.20 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=34.1 Q ss_pred HHHHHHHHHHHHCCC--HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 999999999984582--34530301369899999999999999586714552 Q gi|254780507|r 84 EIATDYLYTLLSGPP--MGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEV 133 (176) Q Consensus 84 p~i~D~~~~~L~~~~--~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DV 133 (176) +.|.|++...+.... +.. ...++.||+.|-+...++.|-++|.-| T Consensus 5 ~~I~eAa~~Ai~~g~t~Yt~-----~~GipeLReAIa~~~~r~ygveI~~~~ 51 (62) T 1o4s_A 5 EPVVEEAVRFLQKGEVKYTD-----PRGIYELREGIAKRIGERYKKDIINTV 51 (62) T ss_dssp HHHHHHHHHHHTTCCCCCCC-----TTCCHHHHHHHHHHHHHHHTCCCCCHH T ss_pred HHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 99999999998558868899-----847799999999999998489993389 No 3 >>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} (A:) Probab=31.81 E-value=36 Score=15.11 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=61.5 Q ss_pred EECCCCEEEEEEEEEEEEECHHH--------HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 64068623699999999827579--------9764439999999999845823453030136989999999999999958 Q gi|254780507|r 55 SVSNGVLQAYFLVKLSFIVNDSQ--------ERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLG 126 (176) Q Consensus 55 vI~dg~v~~yv~~~l~~eV~~~~--------~~~~~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG 126 (176) +...+++.=.+-+.+.|-+.+.. ..+.+.+.+.+++-..+...+..++-.- -..+.++|++.+|+.+. T Consensus 19 v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~alr~~~~~~~~~el~~~----R~~i~~~i~~~l~~~l~ 94 (113) T 2rpb_A 19 VICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSG----RDIINARLREELDKITD 94 (113) T ss_dssp EECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHC----HHHHHHHHHHHHHHHHG T ss_pred EECCCCCEEEEEEEEEEEECCHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHHHHHHHHH T ss_conf 68389999999899999988768872127999999999999999999865539999825----99999999998987760 Q ss_pred CC--CEEEEEEEEECC Q ss_conf 67--145523201113 Q gi|254780507|r 127 SQ--FISEVLIDELNY 140 (176) Q Consensus 127 ~~--~V~DVLi~~f~y 140 (176) .= .|.+|.|++++| T Consensus 95 ~~Gi~i~~v~I~~i~~ 110 (113) T 2rpb_A 95 RWGVKITRVEIQRIDP 110 (113) T ss_dssp GGTEECCCEEECCCBC T ss_pred CCCEEEEEEEEEEEEC T ss_conf 2698999999985219 No 4 >>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, topoisomerase I; HET: DNA 5IU PTR; 2.10A {Homo sapiens} (A:324-388) Probab=22.15 E-value=12 Score=17.87 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=10.4 Q ss_pred EEEECCCCHHHHHH Q ss_conf 20111369999974 Q gi|254780507|r 135 IDELNYLSIVDMRS 148 (176) Q Consensus 135 i~~f~y~~k~~ir~ 148 (176) +=+|+|+.|+.||- T Consensus 27 ~v~fDFLGKDSiRy 40 (65) T 1a31_A 27 VVEFDFLGKDSIRY 40 (65) T ss_dssp EEEEEEECGGGCEE T ss_pred EEEEEEEECCCEEE T ss_conf 58998861354277 No 5 >>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} (A:) Probab=21.30 E-value=51 Score=14.19 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=13.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHC Q ss_conf 136989999999999999958 Q gi|254780507|r 106 KAFGFDNLRKKIKEDLNSRLG 126 (176) Q Consensus 106 ~~~~l~~lk~~I~~~vN~~lG 126 (176) +..|++.+|++|.+.+.+.|. T Consensus 5 ~~~dle~lKqeIL~EvRkElq 25 (45) T 1use_A 5 DYSDLQRVKQELLEEVKKELQ 25 (45) T ss_dssp CHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHH T ss_conf 022288999999999999999 No 6 >>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} (A:49-98,A:288-313) Probab=19.39 E-value=62 Score=13.72 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCE Q ss_conf 99999999998458234530301369899999999999999586714 Q gi|254780507|r 84 EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFI 130 (176) Q Consensus 84 p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V 130 (176) +.|+|++...+......--.=.-...++.||+.|-+...++.|-++- T Consensus 5 ~~I~eAa~eAl~~gdp~~h~Ytp~~G~PeLReAIA~~y~r~yGv~v~ 51 (76) T 1yiz_A 5 KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIC 51 (76) T ss_dssp HHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999998389966768999978999999999988998499885 No 7 >>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} (A:298-363) Probab=17.41 E-value=17 Score=16.92 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=4.7 Q ss_pred EECCCCHHHHH Q ss_conf 11136999997 Q gi|254780507|r 137 ELNYLSIVDMR 147 (176) Q Consensus 137 ~f~y~~k~~ir 147 (176) .|+|++|+.|| T Consensus 25 ~fDFLGKDSiR 35 (66) T 2b9s_A 25 RFDFLGKDSIR 35 (66) T ss_dssp EEEEECGGGCE T ss_pred EEEECCCCCCE T ss_conf 99976876707 No 8 >>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} (A:1-67) Probab=15.08 E-value=56 Score=13.98 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHCCCCEE Q ss_conf 999999999999995867145 Q gi|254780507|r 111 DNLRKKIKEDLNSRLGSQFIS 131 (176) Q Consensus 111 ~~lk~~I~~~vN~~lG~~~V~ 131 (176) ..=.+.|..++|++||.+.|. T Consensus 33 ~~E~~~iq~~L~k~LGPEyIS 53 (67) T 1h2i_A 33 AEEYQAIQKALRQRLGPEYIS 53 (67) T ss_dssp HHHHHHHHHHHHCCBCTTTEE T ss_pred HHHHHHHHHHHHCCCCCHHHE T ss_conf 888899999996424711320 No 9 >>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:143-211) Probab=13.14 E-value=90 Score=12.79 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEC Q ss_conf 99999999999586714552320111 Q gi|254780507|r 114 RKKIKEDLNSRLGSQFISEVLIDELN 139 (176) Q Consensus 114 k~~I~~~vN~~lG~~~V~DVLi~~f~ 139 (176) .+++.+..++.+....-..||+|+|- T Consensus 43 ~~el~~a~~~~~~~~~~~~vlvE~fi 68 (69) T 1a9x_A 43 REEFEEICARGLDLSPTKELLIDESL 68 (69) T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECC T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 99999999999985899968999741 No 10 >>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str} (A:1-91) Probab=13.05 E-value=91 Score=12.78 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=5.8 Q ss_pred CCCCCCEEEEEEC Q ss_conf 1115850787640 Q gi|254780507|r 45 IIKSELVSIPSVS 57 (176) Q Consensus 45 yVkl~~i~VPvI~ 57 (176) |-+++...|+... T Consensus 54 fg~Le~P~V~F~H 66 (91) T 2e84_A 54 FGNLELPKVTFPH 66 (91) T ss_dssp GSCCSSCCEEEEH T ss_pred CCCCCCCCCCCCH T ss_conf 5875789822467 Done!