Query         gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs    109 out of 111
Neff          6.2 
Searched_HMMs 23785
Date          Tue May 31 22:05:42 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780507.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1qrj_B HTLV-I capsid protein;   44.0       6 0.00025   18.7   1.0   73   86-158    98-177 (199)
  2 2j7a_C Cytochrome C quinol deh  33.3       7 0.00029   18.3  -0.1   25    2-26     13-37  (159)
  3 1use_A VAsp, vasodilator-stimu  19.2      43  0.0018   13.8   1.8   20  107-126     6-25  (45)
  4 3owq_A LIN1025 protein; struct  19.1      42  0.0018   13.8   1.7   19   44-62     66-84  (321)
  5 1yiz_A Kynurenine aminotransfe  13.4      62  0.0026   12.8   5.9   11  113-123   324-334 (429)
  6 2zkr_t 60S ribosomal protein L  10.3      79  0.0033   12.2   1.5   42  131-175   102-143 (145)
  7 1win_A Flotillin 2; BAND 7 dom   9.7      83  0.0035   12.1   9.6   92   55-152    24-134 (143)
  8 2fp4_B Succinyl-COA ligase [GD   9.7      62  0.0026   12.9   0.4   41   95-138   286-326 (395)
  9 1o65_A Hypothetical protein YI   9.2      53  0.0022   13.2  -0.1   46   85-132   181-228 (246)
 10 1cf7_B Protein (transcription    9.1      88  0.0037   12.0   3.4   48   84-132    32-79  (95)

No 1  
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha helical protein, heteronuclear spectroscopy; NMR {Human t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1 a.73.1.1
Probab=44.02  E-value=6  Score=18.69  Aligned_cols=73  Identities=8%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHCC-------CHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf             999999998458-------2345303013698999999999999995867145523201113699999742421367876
Q gi|254780507|r   86 ATDYLYTLLSGP-------PMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNAS  158 (176)
Q Consensus        86 i~D~~~~~L~~~-------~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y~~k~~ir~~~~r~~~~~~  158 (176)
                      ++-.+++.+...       +..++.......+..+=+++.+.+....+.+-.++.++++|-|=+-.++....+|..+.+.
T Consensus        98 ~~~~~l~a~~~~~~~~~~~~~~~i~Qgp~E~~~~fv~RL~~a~~~~~~~~~~~~~l~~~l~~qnAn~~ck~~lr~~~~~~  177 (199)
T 1qrj_B           98 YQQLWLAAFAALPGSAKDPSWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSNANKECQKLLQARGHTN  177 (199)
T ss_dssp             HHHHHHHHHHTSSSSCCCCSGGGCCBCTTSCHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHTTTBCHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf             99999999983778888634888652899998999999999998775988788999999999736399999987168999


No 2  
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=33.31  E-value=7  Score=18.32  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999997402
Q gi|254780507|r    2 LKFLFSGIWISVVTLISFYMLFLRS   26 (176)
Q Consensus         2 iklii~gvwi~~Vtlga~Yf~~~~~   26 (176)
                      +++|++|+.+.++.+++.++.+.+.
T Consensus        13 l~lvl~g~~~g~~~~~~~~~~~~~t   37 (159)
T 2j7a_C           13 LKLVLGGATLGVVALATVAFGMKYT   37 (159)
T ss_dssp             -CCSTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             1448999999999999999998743


No 3  
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=19.16  E-value=43  Score=13.77  Aligned_cols=20  Identities=10%  Similarity=0.312  Sum_probs=12.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHC
Q ss_conf             36989999999999999958
Q gi|254780507|r  107 AFGFDNLRKKIKEDLNSRLG  126 (176)
Q Consensus       107 ~~~l~~lk~~I~~~vN~~lG  126 (176)
                      ..|++.+|++|.+.+.+.|.
T Consensus         6 ~~dl~rlKqeIL~EvRkEl~   25 (45)
T 1use_A            6 YSDLQRVKQELLEEVKKELQ   25 (45)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             51589999999999999999


No 4  
>3owq_A LIN1025 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=19.07  E-value=42  Score=13.82  Aligned_cols=19  Identities=11%  Similarity=0.111  Sum_probs=11.7

Q ss_pred             CCCCCCCEEEEEECCCCEE
Q ss_conf             4111585078764068623
Q gi|254780507|r   44 NIIKSELVSIPSVSNGVLQ   62 (176)
Q Consensus        44 eyVkl~~i~VPvI~dg~v~   62 (176)
                      +..+-++++|-+++-+...
T Consensus        66 ~~~~~~~~niLl~G~D~~~   84 (321)
T 3owq_A           66 DLEKKKPFSVLLMGSDARP   84 (321)
T ss_dssp             ----CCCEEEEEEECC---
T ss_pred             CCCCCCCEEEEEEEECCCC
T ss_conf             5456886799999965899


No 5  
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=13.37  E-value=62  Score=12.83  Aligned_cols=11  Identities=18%  Similarity=0.084  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780507|r  113 LRKKIKEDLNS  123 (176)
Q Consensus       113 lk~~I~~~vN~  123 (176)
                      .|+.+.+.+++
T Consensus       324 ~r~~l~~~L~~  334 (429)
T 1yiz_A          324 KRDYMASFLAE  334 (429)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999986


No 6  
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=10.29  E-value=79  Score=12.24  Aligned_cols=42  Identities=26%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf             552320111369999974242136787664533435111026888
Q gi|254780507|r  131 SEVLIDELNYLSIVDMRSNCLRLGSNASDLMTQKGSLIEKNKEPL  175 (176)
Q Consensus       131 ~DVLi~~f~y~~k~~ir~~~~r~~~~~~~~~~~~~~~~~~~~~p~  175 (176)
                      .+|.|+.+| ++++  |...+-+.+.+.-....+|+..|.+.+++
T Consensus       102 Snv~ItkL~-lDk~--Rk~~Lerk~~~~~~~~~kgk~~e~~~~~~  143 (145)
T 2zkr_t          102 SKVVITRLK-LDKD--RKKILERKAKSRQVGKEKGKYKEETIEKM  143 (145)
T ss_dssp             GGEEECC-C-CCHH--HHHHHHC----------------------
T ss_pred             CCEEEEEEC-CCHH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             106999862-6816--89986011012321000268767677664


No 7  
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=9.73  E-value=83  Score=12.12  Aligned_cols=92  Identities=13%  Similarity=0.082  Sum_probs=56.0

Q ss_pred             EECCCCEEEEEEEEEEEEECHHH-----------------HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf             64068623699999999827579-----------------9764439999999999845823453030136989999999
Q gi|254780507|r   55 SVSNGVLQAYFLVKLSFIVNDSQ-----------------ERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKI  117 (176)
Q Consensus        55 vI~dg~v~~yv~~~l~~eV~~~~-----------------~~~~~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I  117 (176)
                      ++..+++.=-+-+.+.|-|.+..                 ....+.+.+...+=..+...+..++-. ++   +.+.+++
T Consensus        24 v~T~D~v~i~V~a~v~~rI~d~~~~v~~a~~~~~~~~~~~~~~~i~~~~~~~lR~vi~~~~~~el~~-~R---~~i~~~v   99 (143)
T 1win_A           24 VETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQ-DR---DQFAKLV   99 (143)
T ss_dssp             EECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-TH---HHHHHHH
T ss_pred             EECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-CH---HHHHHHH
T ss_conf             7858897797436999999495999999999862477889999999999999999998637888860-89---9999999


Q ss_pred             HHHHHHHHCC--CCEEEEEEEEECCCCHHHHHHHHHH
Q ss_conf             9999999586--7145523201113699999742421
Q gi|254780507|r  118 KEDLNSRLGS--QFISEVLIDELNYLSIVDMRSNCLR  152 (176)
Q Consensus       118 ~~~vN~~lG~--~~V~DVLi~~f~y~~k~~ir~~~~r  152 (176)
                      ++.+++.+..  =.|.+|.|+++++ + .++.++..+
T Consensus       100 ~~~i~~~l~~~Gi~V~~v~I~dI~~-~-~~~~~a~~~  134 (143)
T 1win_A          100 REVAAPDVGRMGIEILSFTIKDVYD-K-VDYLSSLGK  134 (143)
T ss_dssp             HHHHHHHHTTTTEEEEEEECCCEEC-T-TCHHHHHCC
T ss_pred             HHHHHHHHHHCCEEEEEEEEEEECC-C-HHHHHHHHH
T ss_conf             9999999876594999999996078-2-899999999


No 8  
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=9.66  E-value=62  Score=12.86  Aligned_cols=41  Identities=7%  Similarity=0.182  Sum_probs=22.3

Q ss_pred             HCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             45823453030136989999999999999958671455232011
Q gi|254780507|r   95 SGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDEL  138 (176)
Q Consensus        95 ~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f  138 (176)
                      +|-+...|-..+.-   +=.+++.+...-.+..+.|+-+||-=|
T Consensus       286 ~Gg~pANFlD~GG~---a~~e~v~~a~~iil~d~~vk~iliNIf  326 (395)
T 2fp4_B          286 NGGKPANFLDLGGG---VKESQVYQAFKLLTADPKVEAILVNIF  326 (395)
T ss_dssp             TTCCBCEEEECCSS---CCHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred             CCCCCCEEEECCCC---CCHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             15773315641788---878999999999963999878999980


No 9  
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=9.16  E-value=53  Score=13.21  Aligned_cols=46  Identities=13%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             999999999845823--453030136989999999999999958671455
Q gi|254780507|r   85 IATDYLYTLLSGPPM--GDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISE  132 (176)
Q Consensus        85 ~i~D~~~~~L~~~~~--~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~D  132 (176)
                      .....+++++|.+..  ..+..  ..+++.|-++.++.+.+||-.+.|.|
T Consensus       181 ~tv~~~~~~~~~~~~~~~~l~~--ll~~~~L~~~wr~~~~kRL~~g~~ed  228 (246)
T 1o65_A          181 VTVQEAAAIAWHMPFDDDQYHR--LLSAAGLSKSWTRTMQKRRLSGKIED  228 (246)
T ss_dssp             CBHHHHHHHHHTSCCCHHHHHH--HHTSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCHHHHHHHHHCCCCCHHHHHH--HHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             9899999998548889999999--86687668999999999987098757


No 10 
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=9.11  E-value=88  Score=11.98  Aligned_cols=48  Identities=19%  Similarity=0.313  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             9999999999845823453030136989999999999999958671455
Q gi|254780507|r   84 EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISE  132 (176)
Q Consensus        84 p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~D  132 (176)
                      -.+.|+++..+.+. .........++...+|.++=+.+|--.+-++|..
T Consensus        32 neVAdeLV~e~~~~-~~~~~~~~~~deKNi~RRvYD~~nVl~~~~~i~k   79 (95)
T 1cf7_B           32 NEVADELVSEFTNS-NNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK   79 (95)
T ss_dssp             HHHHHHHHHHHHTC-TTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC
T ss_pred             HHHHHHHHHHHHHC-CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999997503-2578861000102478899999999998738860


Done!