Query gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 109 out of 111
Neff 6.2
Searched_HMMs 13730
Date Wed Jun 1 10:52:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780507.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wina_ d.43.2.1 (A:) Flotilli 28.7 16 0.0012 14.8 9.4 93 55-153 24-135 (143)
2 d1qrjb1 a.28.3.1 (B:131-214) H 17.4 16 0.0012 14.8 0.5 45 98-142 2-46 (84)
3 d2r5ea1 c.67.1.1 (A:12-429) Ky 16.6 29 0.0021 13.3 5.9 13 111-123 311-323 (418)
4 d1d1da1 a.28.3.1 (A:151-230) R 10.9 27 0.002 13.5 0.2 61 98-158 2-62 (80)
5 d1cf7b_ a.4.5.17 (B:) Cell cyc 9.8 47 0.0035 12.1 3.4 47 84-131 24-70 (82)
6 d2eiaa1 a.28.3.1 (A:148-222) E 8.1 27 0.002 13.5 -0.7 43 98-140 2-44 (75)
7 d1p0za_ d.110.6.1 (A:) Sensor 6.4 68 0.0049 11.2 2.6 20 117-139 40-59 (131)
8 d1jr8a_ a.24.15.1 (A:) Thiol o 6.3 68 0.005 11.2 1.9 44 84-130 49-92 (105)
9 d1oqca_ a.24.15.1 (A:) Augment 6.1 71 0.0052 11.1 1.9 44 84-130 51-94 (112)
10 d1o65a_ b.58.1.2 (A:) Hypothet 5.0 67 0.0049 11.3 -0.1 46 85-132 177-224 (233)
No 1
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.68 E-value=16 Score=14.79 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=56.1
Q ss_pred EECCCCEEEEEEEEEEEEECHHH-----------------HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 64068623699999999827579-----------------9764439999999999845823453030136989999999
Q gi|254780507|r 55 SVSNGVLQAYFLVKLSFIVNDSQ-----------------ERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKI 117 (176)
Q Consensus 55 vI~dg~v~~yv~~~l~~eV~~~~-----------------~~~~~~p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I 117 (176)
++..+++.=-+.+.+.|-|.+.. ....+.+.+.+.+=..+...+..++-. ++ +.+.+++
T Consensus 24 v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~el~~-~R---~~i~~~v 99 (143)
T d1wina_ 24 VETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQ-DR---DQFAKLV 99 (143)
T ss_dssp EECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-TH---HHHHHHH
T ss_pred EECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-CH---HHHHHHH
T ss_conf 7978997899999999998480888888887650365889999999999999998752366899985-79---9999999
Q ss_pred HHHHHHHHC--CCCEEEEEEEEECCCCHHHHHHHHHHC
Q ss_conf 999999958--671455232011136999997424213
Q gi|254780507|r 118 KEDLNSRLG--SQFISEVLIDELNYLSIVDMRSNCLRL 153 (176)
Q Consensus 118 ~~~vN~~lG--~~~V~DVLi~~f~y~~k~~ir~~~~r~ 153 (176)
++.+++.+. +=.|.+|.|.++++- +++.++..+.
T Consensus 100 ~~~i~~~l~~~Gi~v~~v~I~dI~~~--~~~~~a~~~~ 135 (143)
T d1wina_ 100 REVAAPDVGRMGIEILSFTIKDVYDK--VDYLSSLGKT 135 (143)
T ss_dssp HHHHHHHHTTTTEEEEEEECCCEECT--TCHHHHHCCC
T ss_pred HHHHHHHHHHHCEEEEEEEEEECCCC--HHHHHHHHHH
T ss_conf 99999999973818989999961883--9999999999
No 2
>d1qrjb1 a.28.3.1 (B:131-214) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=17.41 E-value=16 Score=14.84 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=36.1
Q ss_pred CHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
Q ss_conf 234530301369899999999999999586714552320111369
Q gi|254780507|r 98 PMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLS 142 (176)
Q Consensus 98 ~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y~~ 142 (176)
++.+++..-+..+..+-+++.+.+.+..+.+-+++.+++++-|=-
T Consensus 2 s~~~IkQGpkEpf~dfVdRl~~a~~~~~~~~~~k~~l~~~L~~qN 46 (84)
T d1qrjb1 2 SWASILQGLEEPYHAFVERLNIALDNGLPEGTPKDPILRSLAYSN 46 (84)
T ss_dssp SGGGCCBCTTSCHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 611074589996799999999999865387778999999998970
No 3
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Probab=16.64 E-value=29 Score=13.35 Aligned_cols=13 Identities=15% Similarity=-0.013 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780507|r 111 DNLRKKIKEDLNS 123 (176)
Q Consensus 111 ~~lk~~I~~~vN~ 123 (176)
...|+.+.+.+++
T Consensus 311 ~~~r~~l~~~L~~ 323 (418)
T d2r5ea1 311 MAKRDYMASFLAE 323 (418)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8764667766764
No 4
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=10.95 E-value=27 Score=13.51 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=41.6
Q ss_pred CHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 2345303013698999999999999995867145523201113699999742421367876
Q gi|254780507|r 98 PMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLGSNAS 158 (176)
Q Consensus 98 ~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y~~k~~ir~~~~r~~~~~~ 158 (176)
+..|++..-+..+..+-+++.+.+....+..-++..+++++-|=--..-=...+|+.+.+.
T Consensus 2 p~t~IkQGpkEpf~dfVdRl~~al~~~~~~~~~k~~~~~~L~~qNANpdCk~iLral~~~~ 62 (80)
T d1d1da1 2 PWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTL 62 (80)
T ss_dssp TTTSCCCCSSSCHHHHHHHHHHHHHTSSCCTTTTTHHHHHHHTTSSCHHHHHHHHTSCTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 8520333888609999999999998762888788999999999852899999998479999
No 5
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.80 E-value=47 Score=12.14 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999999984582345303013698999999999999995867145
Q gi|254780507|r 84 EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFIS 131 (176)
Q Consensus 84 p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~ 131 (176)
-.+.|++...+.+.. ........+|-..+|+++=+++|-.+--++|.
T Consensus 24 ~eVAdeLv~e~~~~~-~~~~~~~~~d~KNIRRRVYDALNVLmA~~II~ 70 (82)
T d1cf7b_ 24 NEVADELVSEFTNSN-NHLAADSAYDQKNIRRRVYDALNVLMAMNIIS 70 (82)
T ss_dssp HHHHHHHHHHHHTCT-TCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHHHC-CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999987320-37884100011123689999999999973465
No 6
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=8.11 E-value=27 Score=13.53 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=34.1
Q ss_pred CHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf 2345303013698999999999999995867145523201113
Q gi|254780507|r 98 PMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNY 140 (176)
Q Consensus 98 ~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~DVLi~~f~y 140 (176)
+..|++...+..+..+-+++.+.+.+..+..-+++.+++++-|
T Consensus 2 ~~~dIkQGpkEpf~dfVdRl~~a~~~~~~~~~~k~~~~~~L~~ 44 (75)
T d2eiaa1 2 KAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTI 44 (75)
T ss_dssp SSTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7442650999988999999999997213767689999998847
No 7
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.41 E-value=68 Score=11.24 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=8.2
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEC
Q ss_conf 99999999586714552320111
Q gi|254780507|r 117 IKEDLNSRLGSQFISEVLIDELN 139 (176)
Q Consensus 117 I~~~vN~~lG~~~V~DVLi~~f~ 139 (176)
+.+++.+..|.+ .++|.+=+
T Consensus 40 ~~~~l~~~~~~~---~i~v~D~~ 59 (131)
T d1p0za_ 40 LIDPMRSFSDAT---YITVGDAS 59 (131)
T ss_dssp HHHHHHHHSCCS---EEEEEETT
T ss_pred HHHHHHHHCCCC---EEEEECCC
T ss_conf 999999972982---89999799
No 8
>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.35 E-value=68 Score=11.22 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999999998458234530301369899999999999999586714
Q gi|254780507|r 84 EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFI 130 (176)
Q Consensus 84 p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V 130 (176)
+.-+.-+...|...+ .++. ++.+|...-=.+...||++||.+..
T Consensus 49 ~~C~~h~~~~l~~~p-~~~~--sr~~l~~wl~~~HN~VN~~lgKp~~ 92 (105)
T d1jr8a_ 49 GECSYHFVKLIEKYP-VQTS--SRTAAAMWGCHIHNKVNEYLKKDIY 92 (105)
T ss_dssp HHHHHHHHHHHHHSC-CCCS--SHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHCC-CCCC--CHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999989999998684-4468--8999999999999999998599986
No 9
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.09 E-value=71 Score=11.13 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999999998458234530301369899999999999999586714
Q gi|254780507|r 84 EIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFI 130 (176)
Q Consensus 84 p~i~D~~~~~L~~~~~~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V 130 (176)
+.-+.-+...|.... .++. ++.+|-...=++...||++||...+
T Consensus 51 ~~Cr~h~~~~l~~~~-~~~~--sr~~l~~wl~~~HN~VN~rlgKp~~ 94 (112)
T d1oqca_ 51 EECAEDIRKRIDRSQ-PDTS--TRVSFSQWLCRLHNEVNRKLGKPDF 94 (112)
T ss_dssp HHHHHHHHHHHHHSC-CCCS--SHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHCC-CCCC--CHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 889989999998569-6658--8899999999999999998399987
No 10
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]}
Probab=5.04 E-value=67 Score=11.27 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCH--HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999999845823--453030136989999999999999958671455
Q gi|254780507|r 85 IATDYLYTLLSGPPM--GDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISE 132 (176)
Q Consensus 85 ~i~D~~~~~L~~~~~--~D~~~~~~~~l~~lk~~I~~~vN~~lG~~~V~D 132 (176)
.-..++++++|.+.. ..+.. ..+++.|-++.++.+.+||-.+.+.|
T Consensus 177 ~tv~~~~~~~~~~~~~~~~l~~--~l~~~~L~~~wr~~~~krl~~~~~ed 224 (233)
T d1o65a_ 177 VTVQEAAAIAWHMPFDDDQYHR--LLSAAGLSKSWTRTMQKRRLSGKIED 224 (233)
T ss_dssp CBHHHHHHHHHTSCCCHHHHHH--HHTSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHCCCCCHHHHHH--HHCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9899999998518789999999--86688788999999999986099756
Done!