RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780507|ref|YP_003064920.1| hypothetical protein
CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62]
(176 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 40.7 bits (95), Expect = 2e-04
Identities = 38/268 (14%), Positives = 72/268 (26%), Gaps = 142/268 (52%)
Query: 2 LKFLFSGIWISVVTLISF----------------------YMLFLR--SMDTMVENHVPP 37
+ LF +I V ++ ML + + + V+++
Sbjct: 300 ITVLF---FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-VQDY--- 352
Query: 38 LAIKNTN--IIKSELVSIPSVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLS 95
+ TN + + V I S+ NG + +V S
Sbjct: 353 --VNKTNSHLPAGKQVEI-SLVNG--------AKNLVV---------------------S 380
Query: 96 GPPMGDFVQIKAFGFD-NLRKKIKED--LN-SR---------LGSQF--IS--------- 131
GPP +G + LRK K L+ SR ++F ++
Sbjct: 381 GPP------QSLYGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 132 ---EVLIDELNY---------LSI-V-------DMRSNCLRLGSNASDLMTQK------- 164
+++ +L + I V D+R + D + +
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 165 -------------------GSLIEKNKE 173
G L +NK+
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 30.7 bits (69), Expect = 0.20
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 41/139 (29%)
Query: 55 SVSNGVLQAYFLVKLSFIVNDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLR 114
++S+G L+ LV + SQ L+E + L P + F D
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQ----LQE---QFNKIL---PEPTE-----GFAAD--- 51
Query: 115 KKIKEDLNS--RLGSQFISEVLIDELN------YLSIV-----DMRSNCLRLGSN----A 157
++ + L +F+ V + + ++ + + L G++ A
Sbjct: 52 ----DEPTTPAELVGKFLGYVS-SLVEPSKVGQFDQVLNLCLTEFENCYLE-GNDIHALA 105
Query: 158 SDLMTQKGSLIEKNKEPLK 176
+ L+ + + + K KE +K
Sbjct: 106 AKLLQENDTTLVKTKELIK 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.3 bits (72), Expect = 0.061
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 26 SMDTMVENHVPPLAIKNT 43
S+ ++ P LAIK T
Sbjct: 28 SLKLYADDSAPALAIKAT 45
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 32.1 bits (73), Expect = 0.077
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 83 KEIATDYLYTLLSGPPMGDF--VQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNY 140
+++ + L TL+ G +KA GF + RK + +D+ + G ISE + EL
Sbjct: 251 EDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEK 310
Query: 141 LSIVDM 146
++ D+
Sbjct: 311 ATLEDL 316
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 29.8 bits (67), Expect = 0.33
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 103 VQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRS 148
+KA GF + RK + +D+ G Q ISE L +L ++I +
Sbjct: 274 AAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGR 319
>1sjp_A Chaperonin60, 60 kDa chaperonin 2; chaperone, structural genomics,
PSI, protein structure initiative; 3.20A {Mycobacterium
tuberculosis} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Length = 504
Score = 29.8 bits (67), Expect = 0.38
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 103 VQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRS 148
V +KA GF + RK + +D+ G Q ISE + L + +
Sbjct: 230 VAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGK 275
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 28.7 bits (64), Expect = 0.81
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 83 KEIATDYLYTLLSGPPMGDF--VQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNY 140
+++ + L TL+ G +KA GF + RK++ +D+ + G ISE L +L
Sbjct: 250 EDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLEN 309
Query: 141 LSIVDM 146
++ +
Sbjct: 310 ATLSML 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii}
Length = 432
Score = 26.7 bits (58), Expect = 2.7
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 110 FDNLRKKIKEDLNSRLGSQFISEVLIDEL 138
D L + + + LN + F+ + LI E+
Sbjct: 1 MDKLGENLNKALNKLKAAAFVDKKLIKEV 29
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis MC58} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 26.8 bits (58), Expect = 2.9
Identities = 7/22 (31%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 38 LAIKNTNIIK--SELVSIPSVS 57
+++ T ++ EL+S PSV+
Sbjct: 1 MSLTETQSLELAKELISRPSVT 22
>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding,
phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1
PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A
Length = 203
Score = 26.6 bits (59), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 105 IKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDEL 138
+KA GF + RK + +D+ + G ISE + EL
Sbjct: 103 VKAPGFGDRRKAMLQDIATLTGGTVISEEIGMEL 136
>2o18_A Thiamine biosynthesis lipoprotein APBE; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.20A {Escherichia coli}
Length = 340
Score = 26.4 bits (57), Expect = 4.0
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 92 TLLSGPPMGDFVQIKAFGFD-----NLRKKIKEDLNS--RLGSQFISEVLIDELN 139
T+L G MG F + G D L++KI+ L++ +L S + + + N
Sbjct: 16 TVLEGKTMGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFN 70
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG
NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP:
a.102.2.1 PDB: 1g6i_A*
Length = 511
Score = 26.2 bits (57), Expect = 4.2
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 106 KAFGFDNLRKKIKEDLNSRLGSQFISEVLIDELNYLSIVDMRSNCLRLG 154
+G+D N G+Q + +++D ++ L ++ S +
Sbjct: 23 HGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSE 71
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 25.5 bits (55), Expect = 7.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 110 FDNLRKKIKEDLNSRLGSQFISEVLIDEL 138
DNL K + L + + E LI EL
Sbjct: 3 LDNLGKALANTLKKIARASSVDEALIKEL 31
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A
{Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A*
3ocy_A 2hlk_A 2hll_A 3et4_A 3et5_A
Length = 262
Score = 25.4 bits (55), Expect = 7.4
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 74 NDSQERSYLKEIATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFI 130
++ + + Y L G + DF + R+ + + G FI
Sbjct: 158 KSAKAARFAEIEKQGYEIVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFI 214
>2hlk_A Outer membrane protein P4, NADP phosphatase; haloacid dehalogenase
(HAD) fold, DDDD motif, class C nonspecific acid
phosphatase; 1.70A {Haemophilus influenzae} PDB: 2hll_A
3et4_A 3et5_A
Length = 255
Score = 25.3 bits (55), Expect = 7.7
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 85 IATDYLYTLLSGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFI 130
Y L G + DF + R+ + + G FI
Sbjct: 170 EKQGYEIVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFI 215
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.138 0.382
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,408,951
Number of extensions: 60817
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 20
Length of query: 176
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 90
Effective length of database: 3,608,246
Effective search space: 324742140
Effective search space used: 324742140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)