HHsearch alignment for GI: 254780508 and conserved domain: pfam05130
>pfam05130 FlgN FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.
Probab=96.97 E-value=0.011 Score=37.33 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHH---------------------------HCC
Q ss_conf 99999999999999999998517888879989877789999999824998---------------------------819
Q gi|254780508|r 8 RIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILSCE---------------------------EIS 60 (123)
Q Consensus 8 ri~s~i~RLe~vId~Et~aL~~~~~~Dl~e~N~rKSr~LlELtrl~r~~~---------------------------~~~ 60 (123)
T Consensus 8 ~~~~~~~~L~~ll~~E~~aL~~~d~~~L~~l~~~K~~ll~~l~~~~~~r~~~l~~~~~~~~~~~l~~l~~~~~~~l~~~~ 87 (140)
T pfam05130 8 EELELLEELLELLEEEQEALKAGDIEALEELTEEKQELLAQLEQLEEQRQQLLAALGLSAGPAGLSELLEAEDEELRELW 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHH
T ss_conf 99999999999999999999839999999999999999999999999999999970788880368987786158999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 677999999999999999999999999999999999999987528874522
Q gi|254780508|r 61 WDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDG 111 (123)
Q Consensus 61 ~~~~~~L~~Lr~KL~rN~~~L~~HL~AVreVa~ii~~Ai~~aESDGTYSa~ 111 (123)
T Consensus 88 ~~l~~~~~~~~~~N~~N~~li~~~l~~~~~~l~~l~~~~~~---~~~Y~~~ 135 (140)
T pfam05130 88 QELKELLEELQELNERNGRLLEQSLEFNQRLLNILQGARKP---SGTYGAD 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCC
T ss_conf 99999999999999999999999999999999985026888---8884979