Query gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 37 out of 39
Neff 3.7
Searched_HMMs 13730
Date Wed Jun 1 10:01:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780508.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fupa1 a.47.5.1 (A:1-130) Hyp 79.7 2 0.00014 20.8 7.0 87 10-96 15-130 (130)
2 d1iu4a_ d.3.1.8 (A:) Microbial 11.6 13 0.00095 15.8 -1.3 29 85-113 123-151 (331)
3 d2cbia1 a.246.1.1 (A:496-624) 8.6 55 0.004 12.0 3.1 18 16-33 6-23 (129)
4 d7reqa1 c.1.19.1 (A:4-560) Met 8.4 56 0.0041 11.9 4.9 44 64-107 487-541 (557)
5 d1qzxa2 a.36.1.1 (A:295-432) S 8.2 57 0.0041 11.9 2.3 32 9-40 3-40 (138)
6 d2choa1 a.246.1.1 (A:437-590) 7.3 62 0.0045 11.6 3.3 70 16-89 7-81 (154)
7 d1zjka2 g.18.1.1 (A:311-363) C 7.3 60 0.0044 11.7 0.8 12 103-114 39-50 (53)
8 d1cqka_ b.1.1.2 (A:) Immunoglo 6.5 53 0.0038 12.1 0.1 8 103-110 57-64 (101)
9 d2b3ga1 b.40.4.3 (A:3-114) Rep 6.5 48 0.0035 12.3 -0.1 15 104-118 45-62 (112)
10 d2heyr3 g.24.1.1 (R:29-82) Tum 6.5 66 0.0048 11.5 0.6 14 105-120 41-54 (54)
No 1
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=79.72 E-value=2 Score=20.84 Aligned_cols=87 Identities=10% Similarity=0.076 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-------------HH-------------HCC---
Q ss_conf 9999999999999999985178888799898777899999998249-------------98-------------819---
Q gi|254780508|r 10 QTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILS-------------CE-------------EIS--- 60 (123)
Q Consensus 10 ~s~i~RLe~vId~Et~aL~~~~~~Dl~e~N~rKSr~LlELtrl~r~-------------~~-------------~~~--- 60 (123)
.+....|..+.+.|..+|..+..-.|...+..|...+-.+..+-+. .. .+.
T Consensus 15 ~~~~~~L~~LL~~e~~aL~~~d~~~Le~l~~~k~~ll~~l~~~~~~R~~~l~~~g~~~~~~~~~~l~~~~~~~~~l~~~~ 94 (130)
T d2fupa1 15 IGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARERADGAELLARG 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999999999880899999999999999999999999999999997289988323999865599658899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 677999999999999999999999999999999999
Q gi|254780508|r 61 WDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFK 96 (123)
Q Consensus 61 ~~~~~~L~~Lr~KL~rN~~~L~~HL~AVreVa~ii~ 96 (123)
.++...+..+|+.=.+|..++..++..++.+-++++
T Consensus 95 ~~L~~l~~~~k~~N~~Ng~Li~~~~~~~~~~L~iLr 130 (130)
T d2fupa1 95 DELGELLERCQQANLRNGRIIRANQASTGSLLNILR 130 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999999998649
No 2
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase {Streptoverticillium mobaraense [TaxId: 35621]}
Probab=11.57 E-value=13 Score=15.81 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999998752887452252
Q gi|254780508|r 85 LDAARVVADLFKKQLQEIDADGTYHDGFC 113 (123)
Q Consensus 85 L~AVreVa~ii~~Ai~~aESDGTYSa~~~ 113 (123)
..-.|+|+.+|.+|+..+--.|||-.-+-
T Consensus 123 fkrardvasvmnkale~ahdeg~y~~nlk 151 (331)
T d1iu4a_ 123 FQRAREVASVMNRALENAHDESAYLDNLK 151 (331)
T ss_dssp HHHHHHHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 15788899999998761133015777777
No 3
>d2cbia1 a.246.1.1 (A:496-624) Hyaluronidase, post-catalytic domain 3 {Clostridium perfringens [TaxId: 1502]}
Probab=8.56 E-value=55 Score=11.98 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999998517888
Q gi|254780508|r 16 VIAVIDNENKNLKNNSQF 33 (123)
Q Consensus 16 Le~vId~Et~aL~~~~~~ 33 (123)
|...|++=-.++..+...
T Consensus 6 L~~~l~~f~~kl~~G~~~ 23 (129)
T d2cbia1 6 LRAKMDELWNKLSSKEDA 23 (129)
T ss_dssp HHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCCCCH
T ss_conf 999999999998789834
No 4
>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=8.39 E-value=56 Score=11.94 Aligned_cols=44 Identities=23% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHCCCC
Q ss_conf 99999999-999999999999999999999----------999999998752887
Q gi|254780508|r 64 LEQIRTLH-EKLALNSSLLESYLDAARVVA----------DLFKKQLQEIDADGT 107 (123)
Q Consensus 64 ~~~L~~Lr-~KL~rN~~~L~~HL~AVreVa----------~ii~~Ai~~aESDGT 107 (123)
..++.+|+ -|-.||...++.-|+++++++ -+|...|..+.+.-|
T Consensus 487 ~~Q~~rL~~~r~~Rd~~~v~~aL~~L~~~A~~~~~~~~~~Nlmp~~Ieavka~aT 541 (557)
T d7reqa1 487 AEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMAT 541 (557)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCCTTCGGGCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 9999999999987599999999999999974376677777616999999974987
No 5
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.23 E-value=57 Score=11.90 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HH-----HCCCCCHHHHHH
Q ss_conf 999999999999999999-85-----178888799898
Q gi|254780508|r 9 IQTVLKRVIAVIDNENKN-LK-----NNSQFDISISND 40 (123)
Q Consensus 9 i~s~i~RLe~vId~Et~a-L~-----~~~~~Dl~e~N~ 40 (123)
+++.+++...++|.|... +. ..+.|+|.+|-.
T Consensus 3 v~sLvEk~~~~~~~e~~~~~~~~~~~~~G~Ftl~Df~~ 40 (138)
T d1qzxa2 3 IESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYA 40 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-------CCCSTTHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 67899999873158999999999986269744999999
No 6
>d2choa1 a.246.1.1 (A:437-590) Glucosaminidase GH84 post-catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=7.33 E-value=62 Score=11.64 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999851788887998987778999999982499881-----967799999999999999999999999999
Q gi|254780508|r 16 VIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILSCEEI-----SWDHLEQIRTLHEKLALNSSLLESYLDAAR 89 (123)
Q Consensus 16 Le~vId~Et~aL~~~~~~Dl~e~N~rKSr~LlELtrl~r~~~~~-----~~~~~~~L~~Lr~KL~rN~~~L~~HL~AVr 89 (123)
|...|++=...+.++..+.-+++..-+ -||..+...+..+ .+.+..++.-.=..+.....+-..-|.|+.
T Consensus 7 L~~~l~af~~~~~~g~~~~~~a~~~L~----~eF~~i~~A~~~~~~~~~N~~l~~Ei~pWL~~~~~~~~Ag~~al~a~~ 81 (154)
T d2choa1 7 IQPAAERFLKAFKEGKNYDKADFETLQ----YTFERMKESADILLMNTENKPLIVEITPWVHQFKLTAEMGEEVLKMVE 81 (154)
T ss_dssp GHHHHHHHHHHHHHTCCCCHHHHHHHH----HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998859976699999999----999999988999985699876999999999999999999999999998
No 7
>d1zjka2 g.18.1.1 (A:311-363) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.33 E-value=60 Score=11.73 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=9.6
Q ss_pred HCCCCCCCCCCC
Q ss_conf 528874522522
Q gi|254780508|r 103 DADGTYHDGFCE 114 (123)
Q Consensus 103 ESDGTYSa~~~~ 114 (123)
.+|||.|.+.|.
T Consensus 39 ~~~G~Ws~~~P~ 50 (53)
T d1zjka2 39 QKDGSWDRPMPA 50 (53)
T ss_dssp CSSSSBSSCCCE
T ss_pred CCCCCCCCCCCE
T ss_conf 999959999944
No 8
>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.53 E-value=53 Score=12.09 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=0.0
Q ss_pred HCCCCCCC
Q ss_conf 52887452
Q gi|254780508|r 103 DADGTYHD 110 (123)
Q Consensus 103 ESDGTYSa 110 (123)
+.||||+.
T Consensus 57 ~~dgtys~ 64 (101)
T d1cqka_ 57 DTDGSYFV 64 (101)
T ss_dssp CTTSCEEE
T ss_pred CCCCCEEE
T ss_conf 89984999
No 9
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.50 E-value=48 Score=12.34 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCCCC---CCCCCCCCCC
Q ss_conf 28874---5225222381
Q gi|254780508|r 104 ADGTY---HDGFCESLNP 118 (123)
Q Consensus 104 SDGTY---Sa~~~~~~~~ 118 (123)
|||.| ++=|...+|+
T Consensus 45 SDG~~~~~~amLatqln~ 62 (112)
T d2b3ga1 45 SDGLNTLSSFMLATQLNP 62 (112)
T ss_dssp ECSSEEEEEEEECGGGHH
T ss_pred ECCCHHHHHHHHHHHHHH
T ss_conf 776531101233431255
No 10
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.50 E-value=66 Score=11.51 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 8874522522238101
Q gi|254780508|r 105 DGTYHDGFCESLNPCK 120 (123)
Q Consensus 105 DGTYSa~~~~~~~~~~ 120 (123)
+|||++-.--+ |||
T Consensus 41 ~gtyt~~~N~~--~Ck 54 (54)
T d2heyr3 41 PGFYNDVVSSK--PCK 54 (54)
T ss_dssp TTEECCSCBSS--CCE
T ss_pred CCCCCCCCCCC--CCC
T ss_conf 89731765634--569
Done!