RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780508|ref|YP_003064921.1| hypothetical protein
CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62]
(123 letters)
>gnl|CDD|147556 pfam05430, DUF752, Protein of unknown function (DUF752). This
family contains several uncharacterized bacterial
proteins with no known function.
Length = 124
Score = 28.4 bits (64), Expect = 0.53
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 84 YLDAARVVADLF----KKQLQEID--ADGTYHDGFCESLNP 118
RV DL+ + L E+D AD + DGF + NP
Sbjct: 25 EFAGGRVTLDLWFGDARAALPELDFKADAWFLDGFSPAKNP 65
>gnl|CDD|39724 KOG4524, KOG4524, KOG4524, Uncharacterized conserved protein
[Function unknown].
Length = 1014
Score = 26.5 bits (58), Expect = 2.1
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 12 VLKRVIAVIDNENKNLKN---------NSQFDISISNDHKGRCLHELSVLILSCEEISWD 62
+L+ ++ + ++EN L + N Q +S+ H LS L S ++
Sbjct: 320 LLESLVHLENDENPKLPSHCVKLLEVLNEQLHNKLSDIILFENAHRLSRLSFSITDLEKF 379
Query: 63 HLEQIRTLHEKLALNSSLLES 83
L L L ES
Sbjct: 380 AELDTMILEVVNKLFELLNES 400
>gnl|CDD|144772 pfam01295, Adenylate_cycl, Adenylate cyclase, class-I.
Length = 830
Score = 25.7 bits (57), Expect = 3.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 73 KLALNSSLLESYLD---AARVVADLFKKQLQEIDADGTYHDGFCESL 116
K L LLE+Y R+++ FK++L E D + D + L
Sbjct: 264 KAVLKILLLEAYSSEYPNTRLISKEFKQRLLEGDTVSYHFDPYLLML 310
>gnl|CDD|36107 KOG0889, KOG0889, KOG0889, Histone acetyltransferase SAGA, TRRAP/TRA1
component, PI-3 kinase superfamily [Signal transduction
mechanisms, Chromatin structure and dynamics,
Replication, recombination and repair, Cell cycle
control, cell division, chromosome partitioning].
Length = 3550
Score = 25.7 bits (56), Expect = 3.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 80 LLESYLDAARVVADLFKKQLQEID 103
L S+ D+ + D+F K L EI
Sbjct: 2898 WLLSFDDSLGTLGDVFDKFLGEIP 2921
>gnl|CDD|113104 pfam04321, RmlD_sub_bind, RmlD substrate binding domain.
L-rhamnose is a saccharide required for the virulence of
some bacteria. Its precursor, dTDP-L-rhamnose, is
synthesized by four different enzymes the final one of
which is RmlD. The RmlD substrate binding domain is
responsible for binding a sugar nucleotide.
Length = 284
Score = 25.7 bits (57), Expect = 3.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 86 DAARVVADLFKKQLQEIDADGTYH 109
D A + L +K+L+ GTYH
Sbjct: 186 DLADALLALIRKRLRGPALAGTYH 209
>gnl|CDD|146405 pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family
includes enzymes that ADP-ribosylations, for example
ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves
ADP-ribose-L-arginine. The family also includes
dinitrogenase reductase activating glycohydrolase. Most
surprisingly the family also includes jellyfish
crystallins, these proteins appear to have lost the
presumed active site residues.
Length = 281
Score = 25.4 bits (56), Expect = 3.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 74 LALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHD 110
LAL SLLE+ D A L+ + L+E ADG D
Sbjct: 53 LALAESLLENGYDPEDFAARLYVRWLKEGFADGPPRD 89
>gnl|CDD|35273 KOG0050, KOG0050, KOG0050, mRNA splicing protein CDC5 (Myb
superfamily) [RNA processing and modification, Cell
cycle control, cell division, chromosome partitioning].
Length = 617
Score = 25.0 bits (54), Expect = 5.0
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 47 HELSVLILSCEEISWDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQL 99
++ LIL +ISW L L + + + + R++ D + L
Sbjct: 284 YKRDKLILPAPDISWRELRLFVKFGSALLRSRFIQITKVYGIRLLKDYIFRNL 336
>gnl|CDD|146798 pfam04350, PilO, Pilus assembly protein, PilO. PilO proteins are
involved in the assembly of pilin. However, the precise
function of this family of proteins is not known.
Length = 144
Score = 24.8 bits (55), Expect = 6.7
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 79 SLLESYLDAARVVADL--FKKQLQEIDAD 105
+L + + + AR A+L +KKQL+E++
Sbjct: 10 TLKQEFEEKARQAANLPAYKKQLEELEER 38
>gnl|CDD|133058 cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase
is involved in the synthesis of
Poly-beta-1,6-N-acetyl-D-glucosamine.
N-acetyl-glucosamine transferase is responsible for the
synthesis of bacteria
Poly-beta-1,6-N-acetyl-D-glucosamine (PGA).
Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer
that serves as an adhesion for the maintenance of
biofilm structural stability in diverse eubacteria.
N-acetyl-glucosamine transferase is the product of gene
pgaC. Genetic analysis indicated that all four genes of
the pgaABCD locus were required for the PGA production,
pgaC being a glycosyltransferase.
Length = 191
Score = 24.7 bits (54), Expect = 7.8
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 75 ALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFCESLNPC 119
+ L+E D RV+ + IDADG E++ P
Sbjct: 76 QIRQILIEEGADPERVIIAV-------IDADGRLDPNALEAVAPY 113
>gnl|CDD|37085 KOG1874, KOG1874, KOG1874, KEKE-like motif-containing transcription
regulator (Rlr1)/suppressor of sin4 [Transcription].
Length = 1477
Score = 24.3 bits (52), Expect = 8.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 55 SCEEISWDHLEQIRTLHEKLALNSS 79
S E++S + L+ R+ + L S
Sbjct: 761 SKEKVSSEVLDAERSASQSKILESI 785
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,369,368
Number of extensions: 61526
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 19
Length of query: 123
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,491,799
Effective search space: 184163759
Effective search space used: 184163759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)