BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780508|ref|YP_003064921.1| hypothetical protein
CLIBASIA_01975 [Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780508|ref|YP_003064921.1| hypothetical protein CLIBASIA_01975 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 123

 Score =  253 bits (645), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MSTSSDYRIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILSCEEIS 60
           MSTSSDYRIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILSCEEIS
Sbjct: 1   MSTSSDYRIQTVLKRVIAVIDNENKNLKNNSQFDISISNDHKGRCLHELSVLILSCEEIS 60

Query: 61  WDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFCESLNPCK 120
           WDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFCESLNPCK
Sbjct: 61  WDHLEQIRTLHEKLALNSSLLESYLDAARVVADLFKKQLQEIDADGTYHDGFCESLNPCK 120

Query: 121 TTT 123
           TTT
Sbjct: 121 TTT 123


>gi|254781196|ref|YP_003065609.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 119

 Score = 24.3 bits (51), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 65 EQIRTLHEKLALNSSLLESYLDAARVVADLFKKQ 98
          +++ TL  K   N   LES+LD A+ V  L K +
Sbjct: 25 KKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGE 58


>gi|254780131|ref|YP_003064544.1| DNA ligase, NAD-dependent [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 119

 Score = 24.3 bits (51), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 65 EQIRTLHEKLALNSSLLESYLDAARVVADLFKKQ 98
          +++ TL  K   N   LES+LD A+ V  L K +
Sbjct: 25 KKLLTLEAKFLPNKRALESWLDKAKKVTSLSKGE 58


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.131    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,240
Number of Sequences: 1233
Number of extensions: 2805
Number of successful extensions: 6
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 123
length of database: 328,796
effective HSP length: 64
effective length of query: 59
effective length of database: 249,884
effective search space: 14743156
effective search space used: 14743156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)