Query gi|254780509|ref|YP_003064922.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 112
No_of_seqs 141 out of 240
Neff 5.0
Searched_HMMs 23785
Date Tue May 31 22:07:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780509.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q5z_A SIPA, SIPA; cell invasi 57.1 7.7 0.00032 18.3 3.2 53 3-56 82-134 (177)
2 1lm4_A Peptide deformylase PDF 24.6 23 0.00097 15.7 1.3 23 89-111 56-78 (194)
3 2os0_A Peptide deformylase; PD 23.5 28 0.0012 15.2 1.6 23 89-111 45-67 (188)
4 2k0n_A Mediator of RNA polymer 15.5 58 0.0024 13.5 5.4 30 42-71 34-69 (85)
5 1t7l_A 5-methyltetrahydroptero 15.4 59 0.0025 13.5 2.0 31 78-108 460-490 (766)
6 3or1_C Sulfite reductase GAMA; 14.0 47 0.002 14.0 1.0 13 92-104 28-40 (105)
7 1yx3_A Hypothetical protein DS 13.0 69 0.0029 13.1 1.6 15 88-102 110-124 (132)
8 2aia_A Peptide deformylase; hy 12.7 56 0.0023 13.6 1.0 21 91-111 59-79 (203)
9 2nq5_A 5-methyltetrahydroptero 12.1 73 0.0031 12.9 1.7 31 78-108 441-471 (755)
10 1me8_A Inosine-5'-monophosphat 11.3 72 0.003 13.0 1.2 10 91-100 244-253 (503)
No 1
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=57.13 E-value=7.7 Score=18.30 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 432466113554333688754432312078999998702285547999999999
Q gi|254780509|r 3 VLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQ 56 (112)
Q Consensus 3 ~~pis~is~~~~M~gnla~is~~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fE 56 (112)
|+|.+.|-+ ..+-..-+.+...+.--.....|+++-......++|.++|.||-
T Consensus 82 ILpnD~~ks-~alkaqcs~i~~~~eLk~k~~tLkeait~HPqrekLae~Alqf~ 134 (177)
T 1q5z_A 82 ILPNDTIKS-AALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFA 134 (177)
T ss_dssp HSCSSHHHH-HHHHHHHTTGGGCHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 088620308-99999985048985787789999999806946999999999999
No 2
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=24.61 E-value=23 Score=15.68 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHC
Q ss_conf 99999999998079875640104
Q gi|254780509|r 89 LAENISDVIVKQQRITLDLPEIS 111 (112)
Q Consensus 89 l~ee~a~~iAk~ggiGL~~~~~~ 111 (112)
+++++...+...+|+||--|-|.
T Consensus 56 ~~~~~~~~~~~~~GvGLAApQIG 78 (194)
T 1lm4_A 56 QDEEIAKRYGLRSGVGLAAPQIN 78 (194)
T ss_dssp HSHHHHHHHTCCCBSEEEGGGGT
T ss_pred HHHHHHHHCCCCCCEEEECHHCC
T ss_conf 65667753257897698601148
No 3
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=23.52 E-value=28 Score=15.22 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHC
Q ss_conf 99999999998079875640104
Q gi|254780509|r 89 LAENISDVIVKQQRITLDLPEIS 111 (112)
Q Consensus 89 l~ee~a~~iAk~ggiGL~~~~~~ 111 (112)
.+...+..+...+|+||--|.|.
T Consensus 45 ~~~~~~~~~~~~~GvGLAApQIG 67 (188)
T 2os0_A 45 QDPVKAEELQLRGDVGLAAPQLD 67 (188)
T ss_dssp HSHHHHHHHTCCCCSEEEGGGGT
T ss_pred HHHHHHHHCCCCCCEEEEHHHCC
T ss_conf 42234554035798687722368
No 4
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=15.52 E-value=58 Score=13.49 Aligned_cols=30 Identities=10% Similarity=0.316 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHCC
Q ss_conf 2855479999999999999------99999995102
Q gi|254780509|r 42 CDKSKSVPEMTQKLQGIMF------QYFIKSILPEE 71 (112)
Q Consensus 42 ~~~~~~l~~~a~~fEa~fl------~~~lksmr~~~ 71 (112)
.+--+.++.-|++||+-.. +..+.+||...
T Consensus 34 ~~~~EKlk~~A~~FEaaLyaksSSK~eYmdsMr~ki 69 (85)
T 2k0n_A 34 SDTADKIRIHAKNFEAALFAKSSSKKEYMDSMNEKV 69 (85)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 005999998899999999883163999999999999
No 5
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A*
Probab=15.42 E-value=59 Score=13.48 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 7533368999999999999998079875640
Q gi|254780509|r 78 GGFNGDFWQEILAENISDVIVKQQRITLDLP 108 (112)
Q Consensus 78 gg~a~d~~~sMl~ee~a~~iAk~ggiGL~~~ 108 (112)
|....+-|+..+++++...|.+|-.+|||..
T Consensus 460 G~is~eey~~~~~~aI~~~I~~Qe~~GLDvl 490 (766)
T 1t7l_A 460 GEISKEEYEAFIKEQIKKAIELQEEIGLDVL 490 (766)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999999999997399978
No 6
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_C* 2v4j_C*
Probab=14.01 E-value=47 Score=13.98 Aligned_cols=13 Identities=8% Similarity=-0.056 Sum_probs=4.3
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999999807987
Q gi|254780509|r 92 NISDVIVKQQRIT 104 (112)
Q Consensus 92 e~a~~iAk~ggiG 104 (112)
++|+.||++.||.
T Consensus 28 ~iA~~lA~~egi~ 40 (105)
T 3or1_C 28 EWVKYAKGSEGIG 40 (105)
T ss_dssp HHHHHHGGGGTCS
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999767986
No 7
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=12.97 E-value=69 Score=13.09 Aligned_cols=15 Identities=0% Similarity=-0.033 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999998079
Q gi|254780509|r 88 ILAENISDVIVKQQR 102 (112)
Q Consensus 88 Ml~ee~a~~iAk~gg 102 (112)
+|-.-.+++++|=.|
T Consensus 110 LFP~gPaKqa~KiAG 124 (132)
T 1yx3_A 110 LFPYGPAKQACRFAG 124 (132)
T ss_dssp HCTTCHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHC
T ss_conf 869989999999926
No 8
>2aia_A Peptide deformylase; hydrolase; HET: SB8; 1.70A {Streptococcus pneumoniae} PDB: 2ai7_A* 2aie_P* 1lm6_A 2os3_A*
Probab=12.68 E-value=56 Score=13.60 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCCCCCCCHHHC
Q ss_conf 999999998079875640104
Q gi|254780509|r 91 ENISDVIVKQQRITLDLPEIS 111 (112)
Q Consensus 91 ee~a~~iAk~ggiGL~~~~~~ 111 (112)
..+...+...+|+||--|.|.
T Consensus 59 ~~m~~tm~~~~GvGLAApQIG 79 (203)
T 2aia_A 59 PVMAEKMGLRGGVGLAAPQLD 79 (203)
T ss_dssp HHHHHHHTCCCCSEEEGGGGT
T ss_pred HHHHHHHHHCCCEEEEECCCC
T ss_conf 789998876799598502128
No 9
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans}
Probab=12.12 E-value=73 Score=12.94 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 7533368999999999999998079875640
Q gi|254780509|r 78 GGFNGDFWQEILAENISDVIVKQQRITLDLP 108 (112)
Q Consensus 78 gg~a~d~~~sMl~ee~a~~iAk~ggiGL~~~ 108 (112)
|-...+-|+..+++++...|.+|..+|||..
T Consensus 441 G~is~ee~~~~~~~aI~~~I~~Qe~~GLDvi 471 (755)
T 2nq5_A 441 GDISDAEYKQFIQAEIERWIRIQEDLDLDVL 471 (755)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHTCSBB
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999999999998099953
No 10
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=11.31 E-value=72 Score=12.98 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=4.4
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999980
Q gi|254780509|r 91 ENISDVIVKQ 100 (112)
Q Consensus 91 ee~a~~iAk~ 100 (112)
.+.++.+.+.
T Consensus 244 ~eRa~aLveA 253 (503)
T 1me8_A 244 RERVPALVEA 253 (503)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999974
Done!