Query gi|254780509|ref|YP_003064922.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 112
No_of_seqs 141 out of 240
Neff 5.0
Searched_HMMs 13730
Date Wed Jun 1 10:11:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780509.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q5za_ a.196.1.1 (A:) Invasio 58.7 4 0.00029 18.5 3.2 53 3-56 62-114 (145)
2 d1lm4a_ d.167.1.1 (A:) Peptide 34.2 9.9 0.00072 16.4 2.0 29 83-111 47-78 (194)
3 d1lqya_ d.167.1.1 (A:) Peptide 16.8 22 0.0016 14.5 1.1 21 91-111 47-67 (184)
4 d1lm6a_ d.167.1.1 (A:) Peptide 10.7 41 0.003 13.0 1.0 19 92-110 60-78 (202)
5 d2v4jc1 d.203.1.1 (C:3-105) Ds 8.6 57 0.0041 12.3 1.1 20 83-103 77-96 (103)
6 d3bula1 a.46.1.1 (A:651-740) M 5.2 87 0.0064 11.2 2.3 26 45-70 48-75 (90)
7 d1ji8a_ d.203.1.1 (A:) DsrC, t 5.1 89 0.0065 11.2 1.6 17 87-103 88-104 (111)
8 d1u5tb1 a.4.5.54 (B:396-489) V 4.9 93 0.0067 11.1 1.2 10 48-57 13-22 (94)
9 d1zvpa1 d.58.18.9 (A:2-67) Hyp 4.7 74 0.0054 11.6 -0.1 17 60-76 6-22 (66)
10 d1xeoa1 d.167.1.1 (A:1-164) Pe 4.2 1E+02 0.0075 10.8 2.4 22 90-111 31-52 (164)
No 1
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=58.72 E-value=4 Score=18.54 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 432466113554333688754432312078999998702285547999999999
Q gi|254780509|r 3 VLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQ 56 (112)
Q Consensus 3 ~~pis~is~~~~M~gnla~is~~~~s~q~~~~Lk~~~~~~~~~~~l~~~a~~fE 56 (112)
|+|.+.|-+ ..+-..-+.+...+.--.....|+++-......++|.++|.||-
T Consensus 62 ILpnD~~ks-~alkaqcs~i~~~~eLk~k~~tLke~it~HPqrekLae~Alqf~ 114 (145)
T d1q5za_ 62 ILPNDTIKS-AALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFA 114 (145)
T ss_dssp HSCSSHHHH-HHHHHHHTTGGGCHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 088620308-99999985148985788789999999806956899999999999
No 2
>d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus [TaxId: 1280]}
Probab=34.18 E-value=9.9 Score=16.39 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=20.6
Q ss_pred HHHHHHHH---HHHHHHHHHCCCCCCCCHHHC
Q ss_conf 68999999---999999998079875640104
Q gi|254780509|r 83 DFWQEILA---ENISDVIVKQQRITLDLPEIS 111 (112)
Q Consensus 83 d~~~sMl~---ee~a~~iAk~ggiGL~~~~~~ 111 (112)
++++.|.+ +++.+.+...+|+||--|.|.
T Consensus 47 ~m~~tm~~~~~~~~~~~m~~~~GvGLAApQIG 78 (194)
T d1lm4a_ 47 AMREFLVNSQDEEIAKRYGLRSGVGLAAPQIN 78 (194)
T ss_dssp HHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 99999998776788875223786213421212
No 3
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=16.79 E-value=22 Score=14.50 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=15.5
Q ss_pred HHHHHHHHHCCCCCCCCHHHC
Q ss_conf 999999998079875640104
Q gi|254780509|r 91 ENISDVIVKQQRITLDLPEIS 111 (112)
Q Consensus 91 ee~a~~iAk~ggiGL~~~~~~ 111 (112)
..++..+...+|+||--|.|.
T Consensus 47 ~~~~~~~~~~~GvGLAApQIG 67 (184)
T d1lqya_ 47 PELAAKYGLRPGIGLAAPQIN 67 (184)
T ss_dssp HHHHHHHTCCCCSEEEGGGGT
T ss_pred HHHHHHHCCCCCCEEECCEEE
T ss_conf 588875122576303411655
No 4
>d1lm6a_ d.167.1.1 (A:) Peptide deformylase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=10.72 E-value=41 Score=13.04 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCCCCCCHHH
Q ss_conf 9999999807987564010
Q gi|254780509|r 92 NISDVIVKQQRITLDLPEI 110 (112)
Q Consensus 92 e~a~~iAk~ggiGL~~~~~ 110 (112)
.+...+-..+|+||--|.|
T Consensus 60 ~m~~tm~~~~GvGLAApQI 78 (202)
T d1lm6a_ 60 VMAEKMGLRGGVGLAAPQL 78 (202)
T ss_dssp HHHHHHTCCCCSEEEGGGG
T ss_pred HHHHHHHHCCCCCEEHHHH
T ss_conf 8999998667852111331
No 5
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=8.56 E-value=57 Score=12.25 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 689999999999999980798
Q gi|254780509|r 83 DFWQEILAENISDVIVKQQRI 103 (112)
Q Consensus 83 d~~~sMl~ee~a~~iAk~ggi 103 (112)
..| .+|-.--+++++|=.|+
T Consensus 77 ~L~-~LFp~~Pak~~~kiAGL 96 (103)
T d2v4jc1 77 EVY-ELFPSGPGKGACKMAGL 96 (103)
T ss_dssp HHH-HHSTTHHHHTHHHHHTC
T ss_pred HHH-HHCCCCHHHHHHHHHCC
T ss_conf 999-97699889999999169
No 6
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain {Escherichia coli [TaxId: 562]}
Probab=5.24 E-value=87 Score=11.22 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHC
Q ss_conf 5479999999999--9999999999510
Q gi|254780509|r 45 SKSVPEMTQKLQG--IMFQYFIKSILPE 70 (112)
Q Consensus 45 ~~~l~~~a~~fEa--~fl~~~lksmr~~ 70 (112)
-.++.+|.+.|+. +||-++|.|.+.-
T Consensus 48 i~gm~~VG~~f~~ge~flP~vl~sA~aM 75 (90)
T d3bula1 48 MDGMNVVGDLFGEGKMFLPQVVKSARVM 75 (90)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8799999998527875099999999999
No 7
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=5.08 E-value=89 Score=11.17 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 99999999999980798
Q gi|254780509|r 87 EILAENISDVIVKQQRI 103 (112)
Q Consensus 87 sMl~ee~a~~iAk~ggi 103 (112)
.+|-.-.+++++|=.|+
T Consensus 88 ~LFp~gPak~~~kiAGL 104 (111)
T d1ji8a_ 88 QLFPSGPAHGACKVAGA 104 (111)
T ss_dssp HHTTSCHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHHHCC
T ss_conf 98599899999999379
No 8
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.88 E-value=93 Score=11.09 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780509|r 48 VPEMTQKLQG 57 (112)
Q Consensus 48 l~~~a~~fEa 57 (112)
..|.|+|+-.
T Consensus 13 h~ELArqlae 22 (94)
T d1u5tb1 13 LDEIAREIYE 22 (94)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 9
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=4.67 E-value=74 Score=11.62 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999999510211233
Q gi|254780509|r 60 FQYFIKSILPEETVKSL 76 (112)
Q Consensus 60 l~~~lksmr~~~~~~~l 76 (112)
|+.+|++|.|....+.|
T Consensus 6 L~~LL~~m~P~L~~g~y 22 (66)
T d1zvpa1 6 LELLLQSMSPELMAGDY 22 (66)
T ss_dssp HHHHHHTCEEEECSSCE
T ss_pred HHHHHHHCCCEECCCCE
T ss_conf 99999779866789968
No 10
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli [TaxId: 562]}
Probab=4.25 E-value=1e+02 Score=10.82 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=13.4
Q ss_pred HHHHHHHHHHCCCCCCCCHHHC
Q ss_conf 9999999998079875640104
Q gi|254780509|r 90 AENISDVIVKQQRITLDLPEIS 111 (112)
Q Consensus 90 ~ee~a~~iAk~ggiGL~~~~~~ 111 (112)
.+++-..|-..+|+||--|.|.
T Consensus 31 i~dm~~tm~~~~GvGLAApQIG 52 (164)
T d1xeoa1 31 VDDMFETMYAEEGIGLAATQVD 52 (164)
T ss_dssp HHHHHHHHHHTTCSEEEGGGGT
T ss_pred HHHHHHHHHHCCCCEEEEHHHC
T ss_conf 9999997642276101302202
Done!