RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780509|ref|YP_003064922.1| hypothetical protein
CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62]
         (112 letters)



>gnl|CDD|139170 PRK12710, flgJ, flagellar rod assembly protein/muramidase FlgJ;
           Provisional.
          Length = 291

 Score = 27.8 bits (61), Expect = 0.62
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 27  SSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGD--- 83
           S FQ   +LK VQ   +  +++PE+ ++ +GI  Q  +KS+   +        F+G    
Sbjct: 9   SDFQGLNELK-VQAKNNAKEALPEVAKQFEGIFLQSMLKSMRMGQHFLDESSPFSGKNEA 67

Query: 84  FWQEILAENISDVIVKQQRITL 105
            +QE+L    +  I + + I L
Sbjct: 68  TFQEMLDTQYASTIAESKGIGL 89


>gnl|CDD|162297 TIGR01312, XylB, D-xylulose kinase.  D-xylulose kinase (XylB)
           generally is found with xylose isomerase (XylA) and acts
           in xylose utilization.
          Length = 481

 Score = 26.5 bits (59), Expect = 1.7
 Identities = 7/24 (29%), Positives = 17/24 (70%)

Query: 68  LPEETVKSLGGGFNGDFWQEILAE 91
           +P ++++ +GGG     W+++LA+
Sbjct: 389 IPIQSIRLIGGGAKSPAWRQMLAD 412


>gnl|CDD|131814 TIGR02767, TraG-Ti, Ti-type conjugative transfer system protien
           TraG.  This protein is found in the Agrobacterium
           tumefaciens Ti plasmid tra region responsible for
           conjugative transfer of the entire plasmid among
           Agrobacterium strains. The protein is distantly related
           to the F-type conjugation system TraG protein. Both of
           these systems are examples of type IV secretion systems.
          Length = 623

 Score = 25.6 bits (56), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 25  DDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQG 57
           +  SF S+  +KD+  A   SK   +MT ++ G
Sbjct: 521 ESCSFISYAAIKDLDTADYISKRCGDMTVEVDG 553


>gnl|CDD|172350 PRK13822, PRK13822, conjugal transfer coupling protein TraG;
           Provisional.
          Length = 641

 Score = 25.3 bits (56), Expect = 3.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 28  SFQSFLQLKDVQEACDKSKSVPEMTQKLQG 57
           S+ SF  +KD+  A   S+   EMT ++  
Sbjct: 536 SWISFAAIKDLDTADYISERCGEMTVEVDQ 565


>gnl|CDD|163169 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
           This family consists largely of 1-phosphofructokinases,
           but also includes tagatose-6-kinases and
           6-phosphofructokinases.
          Length = 303

 Score = 25.2 bits (56), Expect = 3.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 71  ETVKSLG--GGFNGDFWQEILAE-NISD--VIVKQQ-RITLDLPEISK 112
             V + G  GGF G+F + +LAE  I +  V VK + RI + + E S 
Sbjct: 50  AEVVATGFLGGFTGEFIEALLAEEGIKNDFVEVKGETRINVKIKESSG 97


>gnl|CDD|150771 pfam10135, Rod-binding, Rod binding protein.  Members of this
           family are involved in the assembly of the prokaryotic
           flagellar rod.
          Length = 49

 Score = 25.2 bits (56), Expect = 3.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 76  LGGGFNGDFWQEILAENISDVIVKQQRITL 105
            G GF  D ++ +L + ++  + K+  I L
Sbjct: 13  FGSGFAEDMFRSMLDQQLAKQLAKRGGIGL 42


>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
          Length = 1107

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 89  LAENISDVIVKQQRITLDLPEIS 111
           L ENI   I ++    +D+  + 
Sbjct: 545 LLENIIKFIEQKTGKEIDIRNLP 567


>gnl|CDD|163540 TIGR03828, pfkB, 1-phosphofructokinase.  This enzyme acts in
           concert with the fructose-specific phosphotransferase
           system (PTS) which imports fructose as
           fructose-1-phosphate. The action of
           1-phosphofructokinase results in
           beta-D-fructose-1,6-bisphosphate and is an entry point
           into glycolysis (GenProp0688).
          Length = 304

 Score = 24.9 bits (55), Expect = 5.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 73  VKSLG--GGFNGDFWQEILAEN-ISD--VIVKQQ-RITLDLPEISK 112
           V +LG  GGF GDF + +L E  I    V V  + RI + + E S 
Sbjct: 52  VVALGFLGGFTGDFIEALLREEGIKTDFVRVPGETRINVKIKEPSG 97


>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
           Provisional.
          Length = 915

 Score = 24.6 bits (53), Expect = 5.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 18  NLAKISQDDSSF-QSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKSIL 68
            L ++S+  ++F ++F +  DV E  D+ +S PE T+         FIK  L
Sbjct: 84  RLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENL 135


>gnl|CDD|172707 PRK14219, PRK14219, camphor resistance protein CrcB; Provisional.
          Length = 132

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 66 SILPEETVKSLGGGFNGDF 84
          +ILP + +  +G GF G F
Sbjct: 58 NILPSDVITGIGTGFIGSF 76


>gnl|CDD|128349 smart00034, CLECT, C-type lectin (CTL) or
          carbohydrate-recognition domain (CRD).  Many of these
          domains function as calcium-dependent carbohydrate
          binding modules.
          Length = 126

 Score = 24.5 bits (53), Expect = 6.8
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 13 QSMGGNLAKISQDDSSFQSFLQ 34
          QS+G +LA I     +   F+ 
Sbjct: 30 QSLGAHLASI--HSEAENDFVA 49


>gnl|CDD|162104 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial)
           Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.  This
           family is one of several subfamilies within the scope of
           pfam model pfam00873.
          Length = 1044

 Score = 24.3 bits (53), Expect = 7.4
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5   PISNISHSQSMGG-NLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQ 61
             +N+    ++ G + A   Q  +S  +F++LKD +E   K  SV  +  +  G   Q
Sbjct: 602 EKANVESVFTVNGFSFAGRGQ--NSGMAFIRLKDWEERTGKENSVFAIAGRATGHFSQ 657


>gnl|CDD|180729 PRK06850, PRK06850, hypothetical protein; Provisional.
          Length = 507

 Score = 24.2 bits (53), Expect = 7.9
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 25  DDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMFQYFIKS 66
           D S F S  +   ++E C +     E+ +KL  +  QY   S
Sbjct: 407 DQSLFGS-DEADLLEELCQEDGLHLELVRKLLDLERQYRGLS 447


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0785    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,711,195
Number of extensions: 90513
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 23
Length of query: 112
Length of database: 5,994,473
Length adjustment: 78
Effective length of query: 34
Effective length of database: 4,309,049
Effective search space: 146507666
Effective search space used: 146507666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (22.9 bits)