BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780509|ref|YP_003064922.1| hypothetical protein
CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62]
         (112 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780509|ref|YP_003064922.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 112

 Score =  226 bits (576), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF 60
           MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF
Sbjct: 1   MQVLPISNISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQGIMF 60

Query: 61  QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112
           QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK
Sbjct: 61  QYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVKQQRITLDLPEISK 112


>gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 378

 Score = 20.8 bits (42), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 2   QVLPISNISHSQSMG--------GNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQ 53
           QV+ +S +      G        G+L ++S ++S     L   D+Q   D+  ++P   +
Sbjct: 98  QVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDK 157

Query: 54  KLQGIM 59
           +L+  M
Sbjct: 158 ELKRAM 163


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.132    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,365
Number of Sequences: 1233
Number of extensions: 2425
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 328,796
effective HSP length: 63
effective length of query: 49
effective length of database: 251,117
effective search space: 12304733
effective search space used: 12304733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 32 (16.9 bits)