Query gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 137
No_of_seqs 10 out of 12
Neff 2.4
Searched_HMMs 33803
Date Wed Jun 1 18:46:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780510.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2e01_A Cysteine proteinase 1; 22.9 26 0.00077 15.6 0.5 10 116-125 120-129 (132)
2 >1ck7_A Protein (gelatinase A) 19.2 57 0.0017 13.3 1.7 32 54-85 16-51 (81)
3 >2iie_A Integration HOST facto 19.0 49 0.0015 13.7 1.3 20 1-20 1-20 (204)
4 >3kdv_A DDRB, DNA damage respo 18.5 41 0.0012 14.2 0.8 13 10-22 28-40 (47)
5 >2a1j_B DNA excision repair pr 18.0 60 0.0018 13.1 3.0 50 21-71 8-57 (67)
6 >1uuj_A Platelet-activating fa 14.1 75 0.0022 12.4 2.4 20 30-49 6-25 (60)
7 >3js8_A Cholesterol oxidase; c 13.3 13 0.00039 17.7 -2.8 27 40-67 19-45 (46)
8 >2i0k_A Oxidoreductase; MIX al 13.2 41 0.0012 14.3 -0.4 25 41-66 27-51 (53)
9 >2o98_P H-ATPase PMA2, plasma 12.5 83 0.0024 12.1 3.0 18 25-42 7-24 (52)
10 >1t98_A KICB protein, chromoso 12.0 85 0.0025 12.0 1.1 19 113-131 52-70 (95)
No 1
>>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A (A:100-231)
Probab=22.89 E-value=26 Score=15.63 Aligned_cols=10 Identities=0% Similarity=-0.260 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q ss_conf 8899988876
Q gi|254780510|r 116 NNNDNIEQRI 125 (137)
Q Consensus 116 ~v~D~Idq~~ 125 (137)
.||-++-..+
T Consensus 120 eiYril~i~l 129 (132)
T 2e01_A 120 EIFRLMSLFM 129 (132)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHC
T ss_conf 9999999852
No 2
>>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} (A:1-81)
Probab=19.19 E-value=57 Score=13.26 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 6799988899997677673798----8769999998
Q gi|254780510|r 54 MNPALASHYLKFYHSLSQNDQK----MASLQLVQEN 85 (137)
Q Consensus 54 vh~afs~~Ya~r~~rLs~~Dqq----l~giQqv~E~ 85 (137)
-..-++..|..+||-|...+.- -..|..+|+.
T Consensus 16 ~~~~~~~~YL~~fgyl~~~~~~~~~~~~ai~~~Q~f 51 (81)
T 1ck7_A 16 TDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKF 51 (81)
T ss_dssp CHHHHHHHHHHHHTCCCTTTCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 479999999998578984557634799999999987
No 3
>>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A* (A:)
Probab=19.01 E-value=49 Score=13.67 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 97317899999999999999
Q gi|254780510|r 1 MRSRKSRALYKIITAQCCIK 20 (137)
Q Consensus 1 m~~~rS~kLkRLv~VQrhiE 20 (137)
|++.+|+-..||.+-|+||-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (204)
T 2iie_A 1 MASTKSELIERLATQQSHIP 20 (204)
T ss_dssp CEEEHHHHHHHHHTTCTTSC
T ss_pred CCCHHHHHHHHHHHHHCCCC
T ss_conf 96218899999863331457
No 4
>>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis dsm 11300} (A:1-47)
Probab=18.49 E-value=41 Score=14.21 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254780510|r 10 YKIITAQCCIKSI 22 (137)
Q Consensus 10 kRLv~VQrhiErm 22 (137)
.+|+.||||.-|.
T Consensus 28 ~~lldvqr~ygrl 40 (47)
T 3kdv_A 28 DKLLDVQRQYGRL 40 (47)
T ss_dssp GGHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCC
T ss_conf 6677789873513
No 5
>>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} (B:1-67)
Probab=18.03 E-value=60 Score=13.08 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 986657999999999999999999998411114679998889999767767
Q gi|254780510|r 21 SIAESNLAYTISERKKINILREKLKDSINSTALMNPALASHYLKFYHSLSQ 71 (137)
Q Consensus 21 rmAE~~LAeT~rqR~ei~~~~e~v~~ai~S~~pvh~afs~~Ya~r~~rLs~ 71 (137)
+.-|+--++.++.+.+-+ -.++|++++.+--+||..=+..-...||.|..
T Consensus 8 K~yE~k~~d~I~~~~~~d-y~s~v~~~LTsir~VNKTDa~tLls~FgSl~~ 57 (67)
T 2a1j_B 8 HHHSQDPADLLMEKLEQD-FVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQ 57 (67)
T ss_dssp -----CCSHHHHHHHHHH-HHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHH
T ss_pred HHHCCCCHHHHHHHHHCC-HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 022149689999998478-49999998727998599999999999189346
No 6
>>1uuj_A Platelet-activating factor acetylhydrolase IB alpha subunit; mitosis, neurogenesis, cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} (A:1-60)
Probab=14.11 E-value=75 Score=12.42 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999841
Q gi|254780510|r 30 TISERKKINILREKLKDSIN 49 (137)
Q Consensus 30 T~rqR~ei~~~~e~v~~ai~ 49 (137)
|.||+-|+|-+|-.-..+.|
T Consensus 6 T~RQ~eELnkaI~~YL~~~~ 25 (60)
T 1uuj_A 6 SQRQRDELNRAIADYLRSNG 25 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999888
No 7
>>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:495-540)
Probab=13.32 E-value=13 Score=17.71 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999841111467999888999976
Q gi|254780510|r 40 LREKLKDSINSTALMNPALASHYLKFYH 67 (137)
Q Consensus 40 ~~e~v~~ai~S~~pvh~afs~~Ya~r~~ 67 (137)
.-|.-.-.++..|| |++||+-..|+++
T Consensus 19 nWD~A~atl~~~DP-hrvFssplLD~L~ 45 (46)
T 3js8_A 19 NWDAAKAALAAYDP-YRLFSSPLLDSLG 45 (46)
T ss_dssp SHHHHHHHHHHHCT-TCCSCCHHHHHHT
T ss_pred HHHHHHHHHHHHCC-CCCCCCCCHHHHC
T ss_conf 69999999997598-5561683066308
No 8
>>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} (A:509-561)
Probab=13.16 E-value=41 Score=14.26 Aligned_cols=25 Identities=4% Similarity=0.134 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984111146799988899997
Q gi|254780510|r 41 REKLKDSINSTALMNPALASHYLKFY 66 (137)
Q Consensus 41 ~e~v~~ai~S~~pvh~afs~~Ya~r~ 66 (137)
-|.-.-.++..|| |++||+-..||+
T Consensus 27 WD~A~atL~~~DP-hrvFssplLDrL 51 (53)
T 2i0k_A 27 WDTARARYNQIDP-HRVFTNGFMDKL 51 (53)
T ss_dssp HHHHHHHHHHHCT-TCCSCCHHHHHH
T ss_pred HHHHHHHHHHHCC-CCCCCCHHHHHH
T ss_conf 9999999997697-323278312625
No 9
>>2o98_P H-ATPase PMA2, plasma membrane H+ ATPase; 14-3-3, electrochemical proton gradient, cell turgor, regulation, protein binding; HET: FSC; 2.70A {Nicotiana plumbaginifolia} (P:)
Probab=12.54 E-value=83 Score=12.11 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 579999999999999999
Q gi|254780510|r 25 SNLAYTISERKKINILRE 42 (137)
Q Consensus 25 ~~LAeT~rqR~ei~~~~e 42 (137)
|++||-++-|+||+-..|
T Consensus 7 s~iAEqAkrRAEiARLrE 24 (52)
T 2o98_P 7 NQLAEEAKRRAEIARQRE 24 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 10
>>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, coiled coil, helix-turn helix, domain swapped, condensin, cell cycle; 2.90A {Escherichia coli} (A:23-117)
Probab=12.03 E-value=85 Score=12.01 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCH
Q ss_conf 1468899988876336330
Q gi|254780510|r 113 DDENNNDNIEQRILFNAVS 131 (137)
Q Consensus 113 dDn~v~D~Idq~~atpAss 131 (137)
..|+++|++.|++..--+|
T Consensus 52 ANNAINdlVrQrllnRFts 70 (95)
T 1t98_A 52 ANNAINDXVRQRLLNRFTS 70 (95)
T ss_dssp HHHHHHHHHHHTSEEECC-
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 8889999999999987223
Done!