RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780510|ref|YP_003064923.1| hypothetical protein
CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)



>gnl|CDD|183889 PRK13199, psaB, photosystem I P700 chlorophyll a apoprotein A2;
           Provisional.
          Length = 742

 Score = 26.3 bits (58), Expect = 2.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 110 RQYDDENNNDNIEQRIL 126
           R YD E N DN+  R+L
Sbjct: 401 RDYDPEANKDNVLARVL 417


>gnl|CDD|179375 PRK02126, PRK02126, ribonuclease Z; Provisional.
          Length = 334

 Score = 26.4 bits (59), Expect = 2.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 27  LAYTISERKKINILREKL 44
           LA+ + E+  INI + +L
Sbjct: 167 LAFALEEKAHINIDKNRL 184


>gnl|CDD|150064 pfam09265, Cytokin-bind, Cytokinin dehydrogenase 1, FAD and
           cytokinin binding.  Members of this family adopt an
           alpha+beta sandwich structure with an antiparallel
           beta-sheet, in a ferredoxin-like fold. They are
           predominantly found in plant cytokinin dehydrogenase 1,
           where they are capable of binding both FAD and cytokinin
           substrates. The substrate displays a 'plug-into-socket'
           binding mode that seals the catalytic site and precisely
           positions the carbon atom undergoing oxidation in close
           contact with the reactive locus of the flavin.
          Length = 280

 Score = 25.0 bits (55), Expect = 7.4
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 88  LSEKIKIDRLTEMKDETYLLEERQYDDENNNDNIEQRI 125
            S+  +I  L       Y LE  +Y D++    ++Q +
Sbjct: 58  PSDPKRIASLASNGGVLYCLEVAKYYDDSTAATVDQEV 95


>gnl|CDD|162309 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
           dihydrolipoamide succinyltransferase (E2 component).
           dihydrolipoamide acetyltransferase. The seed for this
           model includes mitochondrial and Gram-negative bacterial
           forms. Mycobacterial candidates are highly derived,
           differ in having and extra copy of the lipoyl-binding
           domain at the N-terminus. They score below the trusted
           cutoff, but above the noise cutoff and above all
           examples of dihydrolipoamide acetyltransferase.
          Length = 403

 Score = 24.7 bits (54), Expect = 7.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 20  KSIAESNLAYTISE-RKKINILR----EKLKDSINSTALM 54
            + A++   +T  E R K+  LR    E+LK++ NSTA++
Sbjct: 161 AAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAML 200


>gnl|CDD|179363 PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit
           HisF; Provisional.
          Length = 253

 Score = 24.6 bits (55), Expect = 8.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 45  KDSINSTALMNPAL 58
           K SINS A+ NP L
Sbjct: 99  KVSINSAAVANPEL 112


>gnl|CDD|162146 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
           Tom22.  translocase (Tom) import receptor, five proteins
           of the Tom channel complex, five proteins of the inner
           membrane translocase (Tim) and three "motor" proteins.
           This family is specific for the Tom22 proteins.
          Length = 145

 Score = 24.5 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 6/30 (20%)

Query: 96  RLTEMKDETYLLEERQY------DDENNND 119
           +LTE++DE +   E+Q       DDE+  D
Sbjct: 3   QLTEVEDEHFQQPEQQTVVEPEEDDEDFTD 32


>gnl|CDD|173589 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylase; Provisional.
          Length = 974

 Score = 24.4 bits (53), Expect = 9.4
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 38  NILREKLKDSINSTALMN--PALASHYLKFYHSLSQNDQKMASLQLVQENTLLSEKIKID 95
           N+LR KLK + N   L+     L  + +    S+    + +A   L+Q   L        
Sbjct: 880 NLLRNKLKKTTNLILLVTKEKQLLDNDIVTKRSILLRFKWVAPCNLIQIEAL-------K 932

Query: 96  RLTEMKDETYLLEERQYDDEN 116
           RL ++ D TY  + +   ++ 
Sbjct: 933 RLRKINDSTYDEDTKNEIEDT 953


>gnl|CDD|182265 PRK10144, PRK10144, formate-dependent nitrite reductase complex
          subunit NrfF; Provisional.
          Length = 126

 Score = 24.4 bits (53), Expect = 9.5
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 16 QCCIKSIAESNLAYTISERKKINILREKLKDSINSTALMN 55
          QC  +++ ESN    +S R ++  +  + K  +     M 
Sbjct: 45 QCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMT 84


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.128    0.335 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,026,529
Number of extensions: 112837
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 27
Length of query: 137
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,179,401
Effective search space: 221508253
Effective search space used: 221508253
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)